Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_071216
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1174803
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
File 4 of 4
Found at i:1008308 original size:19 final size:20
Alignment explanation
Indices: 1008284--1008324 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
1008274 CCTTACCACC
*
1008284 TGAATGGCTCA-CTGACTGA
1 TGAATGGCTCACCTGACCGA
1008303 TGAATGGCTCACCTGACCGA
1 TGAATGGCTCACCTGACCGA
1008323 TG
1 TG
1008325 GTTGAATGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (20 bp):
TGAATGGCTCACCTGACCGA
Left flanking sequence: Indices 1007784 -- 1008283
CCACGCTTCTTTCGCAGAGGTAGTCGAGGGGGGCTCTCTGTGGAGCGATAAGCGAACCCCCCGAT
ACGGAGCTGGGTTAGGATCACACGACTGATCGGGATCACACGACTGACCTTTTCCTTCGATTGAA
CTTCTTTCTTCGATTGAAGAGAGAAAGAGTTTCCTTCCGAGAGATAAGCCGAGTTGGTTATCCCT
TACCTGATACTTTTCATTGAGGGAAGAAGCTGACTAATTAGCTCATAAATAAACTCTCAGGTAAT
AGCTTAACAAGCTTTGAACACGAACTATCACGCGAACTATTAAGCTATTTGGTAGAGTGACATTC
CTCAAACGTAACATTACGAAATGGGGAAGGACATGAACATAAAATGGCAGGTCATGAACATCAAG
GAACGAACATCAAGTGGCATAAACTAAAAGTCACACAGTAGGTCGTTAGCACGAATGAATGTATA
TGCAAGTGCTATTCCTTTCCTTACCGCGTGACATGCCTTACCACC
Right flanking sequence: Indices 1008325 -- 1008824
GTTGAATGGTTCACCTGACTGCGTGACATTCCTTGCCGTAGGCGTCTATACGTCCCTGTGCTGGG
CTCACCCACGAACTCTTCAGTGGGGCACGAACTATTAAGTTTCCTTCCTGCCACGAATTCATTCC
TGTGCTGGGCTCACCTACGAACTCTTCAGTGCGGCTCTTCAGTGCGGCACACAAACTCTTCAGTG
GGGCACGAACTACTCTTCCTTAACACAAATTATTCGATTGTCATACTTAGTGATGTCTCTAATCT
TCTTTACGGAAAAGGATCCTTCTCTCCCTTTTTCATCTGGTTTGCCGGAACAATTGTGCCAGACC
CGAACTAACAAGCGGGCTGTCAATTGCTCAATCTGAATCACTGGCTCTATGGGAGACCATAGACT
CGGGTAAGCCTTTCGTGGGTAGTCGGCTCGGAACACCAGATAGGTGATAGCTGCAGGTCCTTTAC
TCATTGCCCGAGACTTCGTGAGACTATTAAGGGCATTGAAGGTCC
Found at i:1008494 original size:13 final size:13
Alignment explanation
Indices: 1008476--1008502 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1008466 CACCTACGAA
1008476 CTCTTCAGTGCGG
1 CTCTTCAGTGCGG
1008489 CTCTTCAGTGCGG
1 CTCTTCAGTGCGG
1008502 C
1 C
1008503 ACACAAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.33, G:0.30, T:0.30
Consensus pattern (13 bp):
CTCTTCAGTGCGG
Left flanking sequence: Indices 1007976 -- 1008475
CCTTACCTGATACTTTTCATTGAGGGAAGAAGCTGACTAATTAGCTCATAAATAAACTCTCAGGT
AATAGCTTAACAAGCTTTGAACACGAACTATCACGCGAACTATTAAGCTATTTGGTAGAGTGACA
TTCCTCAAACGTAACATTACGAAATGGGGAAGGACATGAACATAAAATGGCAGGTCATGAACATC
AAGGAACGAACATCAAGTGGCATAAACTAAAAGTCACACAGTAGGTCGTTAGCACGAATGAATGT
ATATGCAAGTGCTATTCCTTTCCTTACCGCGTGACATGCCTTACCACCTGAATGGCTCACTGACT
GATGAATGGCTCACCTGACCGATGGTTGAATGGTTCACCTGACTGCGTGACATTCCTTGCCGTAG
GCGTCTATACGTCCCTGTGCTGGGCTCACCCACGAACTCTTCAGTGGGGCACGAACTATTAAGTT
TCCTTCCTGCCACGAATTCATTCCTGTGCTGGGCTCACCTACGAA
Right flanking sequence: Indices 1008503 -- 1009002
ACACAAACTCTTCAGTGGGGCACGAACTACTCTTCCTTAACACAAATTATTCGATTGTCATACTT
AGTGATGTCTCTAATCTTCTTTACGGAAAAGGATCCTTCTCTCCCTTTTTCATCTGGTTTGCCGG
AACAATTGTGCCAGACCCGAACTAACAAGCGGGCTGTCAATTGCTCAATCTGAATCACTGGCTCT
ATGGGAGACCATAGACTCGGGTAAGCCTTTCGTGGGTAGTCGGCTCGGAACACCAGATAGGTGAT
AGCTGCAGGTCCTTTACTCATTGCCCGAGACTTCGTGAGACTATTAAGGGCATTGAAGGTCCTCT
CTTGATGTTATGCAAGTGTGGTACTTAGCGAAGAGAATCGAGCTGCTCGGAGTTAAGTGAGGAGT
AGGACCAAAAGGGATATCCCTTGCAAAGCCAGGGTTTATTAACCTCCGACTGGCTTTGTTTTTGA
TACGCCACCTAATGTTAACTATGCAACGTCTATATTAAATCATAA
Found at i:1011526 original size:17 final size:17
Alignment explanation
Indices: 1011504--1011537 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1011494 CTGCTAGTGA
1011504 GCGGGCTTACTCCTGCT
1 GCGGGCTTACTCCTGCT
1011521 GCGGGCTTACTCCTGCT
1 GCGGGCTTACTCCTGCT
1011538 AGCAAGCGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.35, G:0.29, T:0.29
Consensus pattern (17 bp):
GCGGGCTTACTCCTGCT
Left flanking sequence: Indices 1011004 -- 1011503
ATTAAGAATGACCTTACTGGGTGGATTTACGTATATTATATATCTGTTCAATATTCCCGAAGAGC
TAAAGGATAGATACTCTTTTCCTACCTTATAGATTCCGCAGAGGTGTTCTCCTCGATACGGTAGC
GAGGAGACTATTCACTTCGAGCGGTAGTGAGAATACGATTCACTCGAGGAGCTGTCAATAACGGG
TTCTGTCAGAAGTACAAAAACGTTTCAAATGGCTATTTTATTTCTAAAAAATTCCACTTTCATCC
AAGGAAGGTATCAAGACCTTACTGGGTGGGTTTACCATAAACTTTCTGTACGTATCGGCATCAAA
AGAACTAAGTATTACGTGAGCCAAAGGGAGAGAGGAGATGTAGCTACAAGTTTCCATTACACGCC
TAATTGTACAAGGAAAGAAATCCATTCATTGCTGCTCCATCCGAGAATCTAAGGCCAGCTGCTCC
ACCCGAGAATCTACGGTCGCCATCCGGTCTTTATCCTGCTAGTGA
Right flanking sequence: Indices 1011538 -- 1012037
AGCAAGCGGTTGTGGGCCTTAGTGGATTGCTTATCCATTCTATTGACCAGCTGCTCCACCCATTC
CTTGGTTCTGTCTCCCTGTCTCCCAGGACGAGTTACCCAGTCTCCCAGTCACCCAGTCAAGGAAG
CCAGTCACCCATCCCGGTTGTTGCTCTCATGCCCGAACCCACTGATAAGACCTTTCCTTGGTTCG
GGACCTTGGAGTACTTGCCTACATTGGAGTACTTGCCTACAAGGAAGGTATTCGGTCAGCTAAGG
TCTTCGATAAGGGCGAGGGTCTTCGATAAGGGTCTTCGTTAAGTGTGACGAGGAAATAGCCTTCG
AGTAAGAGTGCTTGCCTACAATTGAATGGCTTATCGGAGTTACGAAGTTAGTGGACTTAGTTACG
AAGTTAGCGGATAAACTAGTCCAAGCTTGCGGACTATAGCGAAAATATCTGCTGCTGCAGAGATA
AAAGTACTTACCCACCTACTTACCCACCTACTTACCCACCTTAGA
Found at i:1011546 original size:22 final size:20
Alignment explanation
Indices: 1011492--1011539 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 20
1011482 CCGGTCTTTA
1011492 TCCTGCTAGTGAGCGGGCTTAC
1 TCCTGCTA--GAGCGGGCTTAC
1011514 TCCTGCT---GCGGGCTTAC
1 TCCTGCTAGAGCGGGCTTAC
1011531 TCCTGCTAG
1 TCCTGCTAG
1011540 CAAGCGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 17 0.71
22 7 0.29
ACGTcount: A:0.10, C:0.31, G:0.29, T:0.29
Consensus pattern (20 bp):
TCCTGCTAGAGCGGGCTTAC
Left flanking sequence: Indices 1010992 -- 1011491
TTCACCCAAGGAATTAAGAATGACCTTACTGGGTGGATTTACGTATATTATATATCTGTTCAATA
TTCCCGAAGAGCTAAAGGATAGATACTCTTTTCCTACCTTATAGATTCCGCAGAGGTGTTCTCCT
CGATACGGTAGCGAGGAGACTATTCACTTCGAGCGGTAGTGAGAATACGATTCACTCGAGGAGCT
GTCAATAACGGGTTCTGTCAGAAGTACAAAAACGTTTCAAATGGCTATTTTATTTCTAAAAAATT
CCACTTTCATCCAAGGAAGGTATCAAGACCTTACTGGGTGGGTTTACCATAAACTTTCTGTACGT
ATCGGCATCAAAAGAACTAAGTATTACGTGAGCCAAAGGGAGAGAGGAGATGTAGCTACAAGTTT
CCATTACACGCCTAATTGTACAAGGAAAGAAATCCATTCATTGCTGCTCCATCCGAGAATCTAAG
GCCAGCTGCTCCACCCGAGAATCTACGGTCGCCATCCGGTCTTTA
Right flanking sequence: Indices 1011540 -- 1012039
CAAGCGGTTGTGGGCCTTAGTGGATTGCTTATCCATTCTATTGACCAGCTGCTCCACCCATTCCT
TGGTTCTGTCTCCCTGTCTCCCAGGACGAGTTACCCAGTCTCCCAGTCACCCAGTCAAGGAAGCC
AGTCACCCATCCCGGTTGTTGCTCTCATGCCCGAACCCACTGATAAGACCTTTCCTTGGTTCGGG
ACCTTGGAGTACTTGCCTACATTGGAGTACTTGCCTACAAGGAAGGTATTCGGTCAGCTAAGGTC
TTCGATAAGGGCGAGGGTCTTCGATAAGGGTCTTCGTTAAGTGTGACGAGGAAATAGCCTTCGAG
TAAGAGTGCTTGCCTACAATTGAATGGCTTATCGGAGTTACGAAGTTAGTGGACTTAGTTACGAA
GTTAGCGGATAAACTAGTCCAAGCTTGCGGACTATAGCGAAAATATCTGCTGCTGCAGAGATAAA
AGTACTTACCCACCTACTTACCCACCTACTTACCCACCTTAGAGA
Found at i:1011761 original size:18 final size:18
Alignment explanation
Indices: 1011738--1011773 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1011728 GTTCGGGACC
1011738 TTGGAGTACTTGCCTACA
1 TTGGAGTACTTGCCTACA
1011756 TTGGAGTACTTGCCTACA
1 TTGGAGTACTTGCCTACA
1011774 AGGAAGGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGGAGTACTTGCCTACA
Left flanking sequence: Indices 1011238 -- 1011737
ATTTCTAAAAAATTCCACTTTCATCCAAGGAAGGTATCAAGACCTTACTGGGTGGGTTTACCATA
AACTTTCTGTACGTATCGGCATCAAAAGAACTAAGTATTACGTGAGCCAAAGGGAGAGAGGAGAT
GTAGCTACAAGTTTCCATTACACGCCTAATTGTACAAGGAAAGAAATCCATTCATTGCTGCTCCA
TCCGAGAATCTAAGGCCAGCTGCTCCACCCGAGAATCTACGGTCGCCATCCGGTCTTTATCCTGC
TAGTGAGCGGGCTTACTCCTGCTGCGGGCTTACTCCTGCTAGCAAGCGGTTGTGGGCCTTAGTGG
ATTGCTTATCCATTCTATTGACCAGCTGCTCCACCCATTCCTTGGTTCTGTCTCCCTGTCTCCCA
GGACGAGTTACCCAGTCTCCCAGTCACCCAGTCAAGGAAGCCAGTCACCCATCCCGGTTGTTGCT
CTCATGCCCGAACCCACTGATAAGACCTTTCCTTGGTTCGGGACC
Right flanking sequence: Indices 1011774 -- 1012273
AGGAAGGTATTCGGTCAGCTAAGGTCTTCGATAAGGGCGAGGGTCTTCGATAAGGGTCTTCGTTA
AGTGTGACGAGGAAATAGCCTTCGAGTAAGAGTGCTTGCCTACAATTGAATGGCTTATCGGAGTT
ACGAAGTTAGTGGACTTAGTTACGAAGTTAGCGGATAAACTAGTCCAAGCTTGCGGACTATAGCG
AAAATATCTGCTGCTGCAGAGATAAAAGTACTTACCCACCTACTTACCCACCTACTTACCCACCT
TAGAGATAAAAGTACTTACCCGTGCTCTTGGGTCACTGAATAGTACATATCTAGGTCTTACCCCA
ACCCAATAAAAAAAACTATATATTTATCAGCTCTTAATAACTCTTTCCTCTCTTTTAATTATCTT
GGGTCAGAAAGAGAAAGATACTGGGGCATTGAGTCAGACACCCTATAGTAGTAAGGACTACTCCC
TCGTGTATACAGGGTGCGTCGTACAGGTGCCCCCCTCGTGTCTAT
Found at i:1012014 original size:12 final size:12
Alignment explanation
Indices: 1011997--1012033 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
1011987 GAGATAAAAG
1011997 TACTTACCCACC
1 TACTTACCCACC
1012009 TACTTACCCACC
1 TACTTACCCACC
1012021 TACTTACCCACC
1 TACTTACCCACC
1012033 T
1 T
1012034 TAGAGATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.24, C:0.49, G:0.00, T:0.27
Consensus pattern (12 bp):
TACTTACCCACC
Left flanking sequence: Indices 1011497 -- 1011996
CTAGTGAGCGGGCTTACTCCTGCTGCGGGCTTACTCCTGCTAGCAAGCGGTTGTGGGCCTTAGTG
GATTGCTTATCCATTCTATTGACCAGCTGCTCCACCCATTCCTTGGTTCTGTCTCCCTGTCTCCC
AGGACGAGTTACCCAGTCTCCCAGTCACCCAGTCAAGGAAGCCAGTCACCCATCCCGGTTGTTGC
TCTCATGCCCGAACCCACTGATAAGACCTTTCCTTGGTTCGGGACCTTGGAGTACTTGCCTACAT
TGGAGTACTTGCCTACAAGGAAGGTATTCGGTCAGCTAAGGTCTTCGATAAGGGCGAGGGTCTTC
GATAAGGGTCTTCGTTAAGTGTGACGAGGAAATAGCCTTCGAGTAAGAGTGCTTGCCTACAATTG
AATGGCTTATCGGAGTTACGAAGTTAGTGGACTTAGTTACGAAGTTAGCGGATAAACTAGTCCAA
GCTTGCGGACTATAGCGAAAATATCTGCTGCTGCAGAGATAAAAG
Right flanking sequence: Indices 1012034 -- 1012533
TAGAGATAAAAGTACTTACCCGTGCTCTTGGGTCACTGAATAGTACATATCTAGGTCTTACCCCA
ACCCAATAAAAAAAACTATATATTTATCAGCTCTTAATAACTCTTTCCTCTCTTTTAATTATCTT
GGGTCAGAAAGAGAAAGATACTGGGGCATTGAGTCAGACACCCTATAGTAGTAAGGACTACTCCC
TCGTGTATACAGGGTGCGTCGTACAGGTGCCCCCCTCGTGTCTATGCCCTCTCTCGCTTTGATGC
TTCGAGGGCTCGCACTCGTAGAATTGGGGGGCCCCTGTCCTCCTTCCCTTCTCACTCGTCCAAAG
GGGAGTAGTCCTTACTCCTAAGCTACTGTCCTCACTCTCCCTCAGGGCCATATGAGCTGTACTCA
TTTCTTCTCTTTAGGCACTGAACAGACTTACGGGACATGGACTTATAAGGTGCTATTTATTATAT
TTTTCTATGGCTTATACCTTCTCTTTTAGCGCCTTCAAGTGGACT
Found at i:1013277 original size:18 final size:18
Alignment explanation
Indices: 1013254--1013337 Score: 66
Period size: 18 Copynumber: 4.7 Consensus size: 18
1013244 TAAAATAGTT
*
1013254 TCGGGCTAAAGGCTGTTA
1 TCGGGCTAAAGGCGGTTA
**
1013272 TCGGGCTAAAGTAGGTTA
1 TCGGGCTAAAGGCGGTTA
*
1013290 TCGGACTAAAGGCATGGTTTA
1 TCGGGCTAAAGGC--GG-TTA
**
1013311 GAGGGCT--A-GCGGTTA
1 TCGGGCTAAAGGCGGTTA
1013326 TCGGGCTAAAGG
1 TCGGGCTAAAGG
1013338 TCGGGGCTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 12
0.68 0.15 0.17
Matches are distributed among these distances:
15 8 0.16
16 2 0.04
17 1 0.02
18 28 0.57
19 1 0.02
20 2 0.04
21 7 0.14
ACGTcount: A:0.25, C:0.14, G:0.36, T:0.25
Consensus pattern (18 bp):
TCGGGCTAAAGGCGGTTA
Left flanking sequence: Indices 1012754 -- 1013253
TCCACTATAATAGATTCATTGATATTAAATAAGTTGCCTTCCTTAGGAGGGCCTGCCTACTAATA
TATTCTGCCTGCCTACTAAGATCTGGAGACCAACGCCACATTCCGATTCAGGACCTTCGGCATAC
ATACGTGGATTTATTATCTTATCTTTACGGCATACCCACATAGATATTAAATAAGTTGCCTTTTG
AGTAGGAGGGCCCGTAATATGACTAGCTGGTCGTAACTAGGTTGCGTTTCTGTGGTAGTCGTGTC
GTGGTTGCCTTCCTTATTACTAGCAGGAAATAGATTTATTTATGACTTATAATCTGACTTACCTC
GCTACCCTAAATTGTAATTCCTCGCTACCCTAAATATGACTTACCACCCGAGAATATAATAACTT
TAGTTGTCTCCTTCTTATCCGATCTGTTGGGCGGATCCCAGCGGTTATCGGAGGGGGCTCCGCCC
CCCCGAACCCCCCAAGTTACCGGCATGAGCATGAATAAAATAGTT
Right flanking sequence: Indices 1013338 -- 1013837
TCGGGGCTATATGGCTGATACCTTATAAAGGGGTAGTCTTAACCGGGGTAGTCTTATGAAGACCT
TTCCTTACCGGTGAAGACCTTTCTTTACTAACTGGGGAAGACCTTACTAACCGGTGAAGACCTTA
ATGCCTTAATTCCTTCCTTATGACTTTCCACCAGAGAATATAAGGAAGAAGAAAGAGATAGATTG
GGATAAGGAAAGATGGGTAGAGAAGATGGGCCATTAAAGGTAGACCAGTAAAGCGACTTCACTAA
GGTCTGGTGGGGAAAGTCCGGTGGGGAAGGACTAGTGGAAGAGATAGATGGGTGGAAGAGAAGGT
CTGGTGGGGATTGAGGGAAGAAAAGAGTATCCTGAAAGGTAAACCCTTAGCTCTGCGTGCGAAGG
GTTAACCTTACGCAGAGCTCTTTGAGGGGAAGAAATATAGGGATAACCTTACCTTCTAGTTAGCT
CTTTGAGGGGAAGAAATCAAGGGCCAGGACCTTACCCGCCCGAGG
Found at i:1013419 original size:20 final size:20
Alignment explanation
Indices: 1013394--1013466 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
1013384 GGTAGTCTTA
1013394 TGAAGACCTTTCCTTACCGG
1 TGAAGACCTTTCCTTACCGG
*
1013414 TGAAGACCTTTCTTTACTAACTGG
1 TGAAGACCTTTCCTTAC---C-GG
* * *
1013438 GGAAGACC-TTACTAACCGG
1 TGAAGACCTTTCCTTACCGG
1013457 TGAAGACCTT
1 TGAAGACCTT
1013467 AATGCCTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
19 9 0.21
20 18 0.43
23 6 0.14
24 9 0.21
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (20 bp):
TGAAGACCTTTCCTTACCGG
Left flanking sequence: Indices 1012894 -- 1013393
TTATTATCTTATCTTTACGGCATACCCACATAGATATTAAATAAGTTGCCTTTTGAGTAGGAGGG
CCCGTAATATGACTAGCTGGTCGTAACTAGGTTGCGTTTCTGTGGTAGTCGTGTCGTGGTTGCCT
TCCTTATTACTAGCAGGAAATAGATTTATTTATGACTTATAATCTGACTTACCTCGCTACCCTAA
ATTGTAATTCCTCGCTACCCTAAATATGACTTACCACCCGAGAATATAATAACTTTAGTTGTCTC
CTTCTTATCCGATCTGTTGGGCGGATCCCAGCGGTTATCGGAGGGGGCTCCGCCCCCCCGAACCC
CCCAAGTTACCGGCATGAGCATGAATAAAATAGTTTCGGGCTAAAGGCTGTTATCGGGCTAAAGT
AGGTTATCGGACTAAAGGCATGGTTTAGAGGGCTAGCGGTTATCGGGCTAAAGGTCGGGGCTATA
TGGCTGATACCTTATAAAGGGGTAGTCTTAACCGGGGTAGTCTTA
Right flanking sequence: Indices 1013467 -- 1013966
AATGCCTTAATTCCTTCCTTATGACTTTCCACCAGAGAATATAAGGAAGAAGAAAGAGATAGATT
GGGATAAGGAAAGATGGGTAGAGAAGATGGGCCATTAAAGGTAGACCAGTAAAGCGACTTCACTA
AGGTCTGGTGGGGAAAGTCCGGTGGGGAAGGACTAGTGGAAGAGATAGATGGGTGGAAGAGAAGG
TCTGGTGGGGATTGAGGGAAGAAAAGAGTATCCTGAAAGGTAAACCCTTAGCTCTGCGTGCGAAG
GGTTAACCTTACGCAGAGCTCTTTGAGGGGAAGAAATATAGGGATAACCTTACCTTCTAGTTAGC
TCTTTGAGGGGAAGAAATCAAGGGCCAGGACCTTACCCGCCCGAGGGGTGGGGAAAAGGCATTCT
ATAGCTACAATAAGTTAACCCAAGGTCCAGAATTTGTGCAACTTCAATAAGGCCAGAATTTGTGC
AACTACTGCTTGCTATAGTGAATTTGCCGTAATTCACAAATTCTG
Found at i:1013451 original size:19 final size:19
Alignment explanation
Indices: 1013427--1013467 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
1013417 AGACCTTTCT
*
1013427 TTACTAACTGGGGAAGACC
1 TTACTAACCGGGGAAGACC
*
1013446 TTACTAACCGGTGAAGACC
1 TTACTAACCGGGGAAGACC
1013465 TTA
1 TTA
1013468 ATGCCTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (19 bp):
TTACTAACCGGGGAAGACC
Left flanking sequence: Indices 1012927 -- 1013426
ATATTAAATAAGTTGCCTTTTGAGTAGGAGGGCCCGTAATATGACTAGCTGGTCGTAACTAGGTT
GCGTTTCTGTGGTAGTCGTGTCGTGGTTGCCTTCCTTATTACTAGCAGGAAATAGATTTATTTAT
GACTTATAATCTGACTTACCTCGCTACCCTAAATTGTAATTCCTCGCTACCCTAAATATGACTTA
CCACCCGAGAATATAATAACTTTAGTTGTCTCCTTCTTATCCGATCTGTTGGGCGGATCCCAGCG
GTTATCGGAGGGGGCTCCGCCCCCCCGAACCCCCCAAGTTACCGGCATGAGCATGAATAAAATAG
TTTCGGGCTAAAGGCTGTTATCGGGCTAAAGTAGGTTATCGGACTAAAGGCATGGTTTAGAGGGC
TAGCGGTTATCGGGCTAAAGGTCGGGGCTATATGGCTGATACCTTATAAAGGGGTAGTCTTAACC
GGGGTAGTCTTATGAAGACCTTTCCTTACCGGTGAAGACCTTTCT
Right flanking sequence: Indices 1013468 -- 1013967
ATGCCTTAATTCCTTCCTTATGACTTTCCACCAGAGAATATAAGGAAGAAGAAAGAGATAGATTG
GGATAAGGAAAGATGGGTAGAGAAGATGGGCCATTAAAGGTAGACCAGTAAAGCGACTTCACTAA
GGTCTGGTGGGGAAAGTCCGGTGGGGAAGGACTAGTGGAAGAGATAGATGGGTGGAAGAGAAGGT
CTGGTGGGGATTGAGGGAAGAAAAGAGTATCCTGAAAGGTAAACCCTTAGCTCTGCGTGCGAAGG
GTTAACCTTACGCAGAGCTCTTTGAGGGGAAGAAATATAGGGATAACCTTACCTTCTAGTTAGCT
CTTTGAGGGGAAGAAATCAAGGGCCAGGACCTTACCCGCCCGAGGGGTGGGGAAAAGGCATTCTA
TAGCTACAATAAGTTAACCCAAGGTCCAGAATTTGTGCAACTTCAATAAGGCCAGAATTTGTGCA
ACTACTGCTTGCTATAGTGAATTTGCCGTAATTCACAAATTCTGT
Found at i:1016447 original size:37 final size:37
Alignment explanation
Indices: 1016400--1016498 Score: 189
Period size: 37 Copynumber: 2.7 Consensus size: 37
1016390 GGCCCTTTCT
*
1016400 AAGGGCGAGGTACGTTAAGTGACTCGCCCGACCTAAG
1 AAGGGGGAGGTACGTTAAGTGACTCGCCCGACCTAAG
1016437 AAGGGGGAGGTACGTTAAGTGACTCGCCCGACCTAAG
1 AAGGGGGAGGTACGTTAAGTGACTCGCCCGACCTAAG
1016474 AAGGGGGAGGTACGTTAAGTGACTC
1 AAGGGGGAGGTACGTTAAGTGACTC
1016499 ACCCCTCACC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.27, C:0.20, G:0.35, T:0.17
Consensus pattern (37 bp):
AAGGGGGAGGTACGTTAAGTGACTCGCCCGACCTAAG
Left flanking sequence: Indices 1015900 -- 1016399
CCATCGAACCAAATTTTTCGTAGAATTCTGATTATTTCGTTTCATTCCTTATCAGAGAGGGGCCG
GCCCCGAGGAGCGGGGCGGCGGCTTATTGGGCGCGCCCCCCCCCACCAGTCAGTGTCTCTTTCTC
TTAAGCGGGTGAGGGTGGTTCTGAGAGGGGGAGATAAACTCCGGAAATAATAACCCTCACCCGGG
CTAACAGCCAGCATTTTTCCAGATCCTTCAATCCAACCAACCAATCCGGGCGGGTAAGGTCCTTC
AAGGTCAACCCAGTCAGGTCCTTATAAACCCTGCTATTTTTAACCCGCGAAGTCAACCCTCCATT
GGACGGACCTTATAATGCCTCACTGTACCGAATACTTATTTCCTTGATCTCCTTCTGCCTACCGG
GGGAGTGGCTCCGCCCCTCGATCTCCCGTCCGACGGGAGATCGAGTGAGAAATCCCTCACCCTAC
TATATGGGGGTCGGGTGAGCGATTTCATCGATGGCGGCCCTTTCT
Right flanking sequence: Indices 1016499 -- 1016998
ACCCCTCACCCTCACCAAATAAGTAACCCAAAGAAAAGGGAATCAATTCATTCTTGGGCTGGCTC
GTCCCTACCTTTCCACCAGTGGTCCTATCTACCTCTCATTACACAATATATCTCTCGAGCACCCC
ACATCTGTCTGTGGTTTGGACACGGAATCGACTCTTTATTTATGGATGGAGGGAGCTTCACAACG
ATAGGGACGAATGGTAGTTCGCGTTACCCTCCCTCTCTTTGAACCTTGTAAGTATTTAACTCACA
GATAGAAACTTAGTGCCGTTTGATGAGTAACTAAGAACGAGGGAGAGGGATACGGGAAGGATGAA
GTAATGGAAGAGAAAGTAATTGCTAGTAGTAACGACTTGTCACGATCCATTGGTTTATATATCAT
CCATGTTCTAGGTGTATCGGGATACATTATTTTCGCTAAGCGTATATAATAAAATTGGGTGGAAG
GGTCCACCCCGCGACGAAGGATGGGGTACTAACTGCCCCAAGACC
Found at i:1019397 original size:18 final size:18
Alignment explanation
Indices: 1019374--1019410 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1019364 GGCCCTTTAT
1019374 ATCTTTCCTGGGCTACTG
1 ATCTTTCCTGGGCTACTG
*
1019392 ATCTTTCCTTGGCTACTG
1 ATCTTTCCTGGGCTACTG
1019410 A
1 A
1019411 ACCTTTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.41
Consensus pattern (18 bp):
ATCTTTCCTGGGCTACTG
Left flanking sequence: Indices 1018874 -- 1019373
TCTAATAGGCAGTTCATAAGGCAAGCCCCGCTCCTCGAGCCTCAAGTGGCTGGAATGAAGTAGGC
ATTGACGATAGCCCGGGCAGTTCATGAGGCAAGCCCCTTTAGAGAGCAAATGTCCTTTAGTGAGC
CAACCGCCTGCCTTTCCTTGAGCCTCTAGTGAGCCAACCGTGATATAATGGTGGCAAGCCCCGCC
CGCCTTGTTAGCCAACCTATTAATTTAATGAAGTAGGCAGTGACAATAGCCCACTTGGCAGTTCA
TGAGGCAAGCCCCTTTAGTAGGGCACCAACCCAGAATATTGTTAACGCAAGCTGGCACCCACCAT
TAGCTGTTCATGAGGCGGGTAACAGAAGGTCTATAAGCCTTAGAACAGAAGGGAACAGATGGGGC
TATCGTTCGTTATTATCCTGTTATTACGCTATATGGATATCGGTTAAAGCCCTACAATAAACCAC
TTACAAAAATTGATCTAGCTGTTACGCTCTGTAGAGGCCCTTTAT
Right flanking sequence: Indices 1019411 -- 1019910
ACCTTTAGTGAGAGGCACCCTAGTTATATTCTTTCCTTGTAGTTAATATAAGAATGAAACGCATA
GGAACGCTCAGATGACGGGCACTCGATGGATGACGGGCACTCAAAATATATCCTGTAGGCAAGCA
CGTATGAAGGCGAACGTATGATGGCGCGAACTTAAGTAGCAACGTCATAACAGCTCCAGGCGAGG
TTATATCCCACAGATGGAAGAGAACCTGTAAGTCTCCCCTCCCAGGTGTCAGGCGTAGGTCTCCC
CTCCCGGGTGAAAGAAGCACAGGTCAGTCTCCTCCTGCCACACTATAGATTATAGTATACATTAC
TTTGACTGTAAACCGAGTATAGTATACATCTCCTGCCCTACTCTACAACGAACGTCTTTCCTTCC
TTAGGTCTCCTATCAAAAAAAATGACGAAAGATTAATTCAATGGACTTTTATACCAAATTCAAAC
CGAGCAACCAATGATTTCTCCTCTGAGGGGAACTTTGTGGAAGAC
Found at i:1023888 original size:16 final size:17
Alignment explanation
Indices: 1023841--1023915 Score: 73
Period size: 20 Copynumber: 4.1 Consensus size: 17
1023831 AAACAAACAC
1023841 GAATGAAGCCCCTGACG
1 GAATGAAGCCCCTGACG
1023858 GAATGGCAAAGCCCCTGACG
1 GAAT-G--AAGCCCCTGACG
1023878 GAATG-AGCCCCTGTCCGACG
1 GAATGAAGCCCC--T--GACG
1023898 GAATG-AGCCCCTGACG
1 GAATGAAGCCCCTGACG
1023914 GA
1 GA
1023916 CGCTATGACG
Statistics
Matches: 51, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
16 12 0.24
17 4 0.08
18 3 0.06
19 1 0.02
20 31 0.61
ACGTcount: A:0.27, C:0.31, G:0.31, T:0.12
Consensus pattern (17 bp):
GAATGAAGCCCCTGACG
Left flanking sequence: Indices 1023341 -- 1023840
GTTTCCTTCTCCTCTTCCTCAATTTGCAAGGCTGTGTCCACTGAAGCAGCAGCAGCTAACATGGT
TATGGTTACAGGAATGGAAAACAACCCAACCAACTCACGGTCTTTAACCATTAGTCCATACCTTT
CAGTCTCAGTCCTTCGGTCTCTAACCATAATCCCCGGCCCTGCCTGTTAAAGTCGCCTTCCCCAG
CCCCTAATTCCCCATATGGCAGTCGCTTTCCCCGGGTTGAGTGGCAGTCTTCTGTACGTAATTCC
CATGGCCCCGGATAATTGGATTCAGTTATGGCCGACAAACCATCCCTAGTTACTGTATATTCTGC
AACTCCAGAATCCGTTACGGCATTCTAGGATTATCAACGAATAGATAGCTTGGTCTCCCATAATA
CAACTGGTAGTCCTGTGCTGGTCCTTGGCCGACTGGAAACTAGACCCTGCATGCAGGCGAAAGTA
GTTTCGGCGGGTGGATACAAAGGAACAAGGTGATGAAACAAACAC
Right flanking sequence: Indices 1023916 -- 1024415
CGCTATGACGGTTCAATGGCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGG
TTCATGCGCACACATACGCCCACATAGCTACGATCACCGCACACAAGGCAGTGGTAAAGTCTATA
GGGTAAAGTCTATAGTTCGTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTA
CCTCTCCTCGCGATCTCGAGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCA
CCTATTAGAGTCAGGCAGTGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCTTA
GGAATAACGGTAGGAATAACGGTTCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCA
CCCCTTACTCTTCCAAAGAGATACCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCT
TGTACACCTTCTCCCTATTCTAGCCGAAGGTACTGCCATTTCTTG
Found at i:1023923 original size:20 final size:20
Alignment explanation
Indices: 1023874--1023923 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
1023864 CAAAGCCCCT
* *
1023874 GACGGAATGAGCCCCTGTCC
1 GACGCAATGAGCCCCTGACC
* *
1023894 GACGGAATGAGCCCCTGACG
1 GACGCAATGAGCCCCTGACC
*
1023914 GACGCTATGA
1 GACGCAATGA
1023924 CGGTTCAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.30, G:0.32, T:0.14
Consensus pattern (20 bp):
GACGCAATGAGCCCCTGACC
Left flanking sequence: Indices 1023374 -- 1023873
GTGTCCACTGAAGCAGCAGCAGCTAACATGGTTATGGTTACAGGAATGGAAAACAACCCAACCAA
CTCACGGTCTTTAACCATTAGTCCATACCTTTCAGTCTCAGTCCTTCGGTCTCTAACCATAATCC
CCGGCCCTGCCTGTTAAAGTCGCCTTCCCCAGCCCCTAATTCCCCATATGGCAGTCGCTTTCCCC
GGGTTGAGTGGCAGTCTTCTGTACGTAATTCCCATGGCCCCGGATAATTGGATTCAGTTATGGCC
GACAAACCATCCCTAGTTACTGTATATTCTGCAACTCCAGAATCCGTTACGGCATTCTAGGATTA
TCAACGAATAGATAGCTTGGTCTCCCATAATACAACTGGTAGTCCTGTGCTGGTCCTTGGCCGAC
TGGAAACTAGACCCTGCATGCAGGCGAAAGTAGTTTCGGCGGGTGGATACAAAGGAACAAGGTGA
TGAAACAAACACGAATGAAGCCCCTGACGGAATGGCAAAGCCCCT
Right flanking sequence: Indices 1023924 -- 1024423
CGGTTCAATGGCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGGTTCATGCG
CACACATACGCCCACATAGCTACGATCACCGCACACAAGGCAGTGGTAAAGTCTATAGGGTAAAG
TCTATAGTTCGTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTACCTCTCCT
CGCGATCTCGAGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCACCTATTAG
AGTCAGGCAGTGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCTTAGGAATAAC
GGTAGGAATAACGGTTCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCACCCCTTAC
TCTTCCAAAGAGATACCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCTTGTACACC
TTCTCCCTATTCTAGCCGAAGGTACTGCCATTTCTTGAGCTGCTC
Found at i:1024052 original size:14 final size:14
Alignment explanation
Indices: 1024033--1024060 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1024023 ACAAGGCAGT
1024033 GGTAAAGTCTATAG
1 GGTAAAGTCTATAG
1024047 GGTAAAGTCTATAG
1 GGTAAAGTCTATAG
1024061 TTCGTTAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
GGTAAAGTCTATAG
Left flanking sequence: Indices 1023533 -- 1024032
CAGCCCCTAATTCCCCATATGGCAGTCGCTTTCCCCGGGTTGAGTGGCAGTCTTCTGTACGTAAT
TCCCATGGCCCCGGATAATTGGATTCAGTTATGGCCGACAAACCATCCCTAGTTACTGTATATTC
TGCAACTCCAGAATCCGTTACGGCATTCTAGGATTATCAACGAATAGATAGCTTGGTCTCCCATA
ATACAACTGGTAGTCCTGTGCTGGTCCTTGGCCGACTGGAAACTAGACCCTGCATGCAGGCGAAA
GTAGTTTCGGCGGGTGGATACAAAGGAACAAGGTGATGAAACAAACACGAATGAAGCCCCTGACG
GAATGGCAAAGCCCCTGACGGAATGAGCCCCTGTCCGACGGAATGAGCCCCTGACGGACGCTATG
ACGGTTCAATGGCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGGTTCATGC
GCACACATACGCCCACATAGCTACGATCACCGCACACAAGGCAGT
Right flanking sequence: Indices 1024061 -- 1024560
TTCGTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTACCTCTCCTCGCGATC
TCGAGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCACCTATTAGAGTCAGG
CAGTGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCTTAGGAATAACGGTAGGA
ATAACGGTTCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCACCCCTTACTCTTCCA
AAGAGATACCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCTTGTACACCTTCTCCC
TATTCTAGCCGAAGGTACTGCCATTTCTTGAGCTGCTCCTCTCCATAGCCTATTGGATAGAATTG
CGATTTAAACAATGTCTTGAAGTCCTCCCATTTTGTAACCATGGGCTTATTGCCTGGGGGTGGGC
AGGACCTACCTTACCGACCGACTGCCTGAAACCCTTCCAACCAAC
Found at i:1024256 original size:12 final size:12
Alignment explanation
Indices: 1024239--1024263 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1024229 TGCATTTCCT
1024239 TAGGAATAACGG
1 TAGGAATAACGG
1024251 TAGGAATAACGG
1 TAGGAATAACGG
1024263 T
1 T
1024264 TCATGAGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (12 bp):
TAGGAATAACGG
Left flanking sequence: Indices 1023739 -- 1024238
AGTCCTGTGCTGGTCCTTGGCCGACTGGAAACTAGACCCTGCATGCAGGCGAAAGTAGTTTCGGC
GGGTGGATACAAAGGAACAAGGTGATGAAACAAACACGAATGAAGCCCCTGACGGAATGGCAAAG
CCCCTGACGGAATGAGCCCCTGTCCGACGGAATGAGCCCCTGACGGACGCTATGACGGTTCAATG
GCTATGGCTCTCAGTCTTTCCTCAGTTCATGAGCTTTCAAACAACGGTTCATGCGCACACATACG
CCCACATAGCTACGATCACCGCACACAAGGCAGTGGTAAAGTCTATAGGGTAAAGTCTATAGTTC
GTTAATCTCCTTCCCGGATTCTCTACCCCTCTTCCCAGGATTCTCTACCTCTCCTCGCGATCTCG
AGTTCTTTCAACATCTCGAGTTCACGAACACTACGATTAATGTGGCACCTATTAGAGTCAGGCAG
TGGGAATAAAGAATCTCCTTCCTTCCATCACCGAGTGCATTTCCT
Right flanking sequence: Indices 1024264 -- 1024763
TCATGAGGCAGTGGGAGAGTCCTCCAAGGTACTTCACCACCACCCCTTACTCTTCCAAAGAGATA
CCCATCCTGATGGCTTGCTTCAGGAATTCAGAAGTGTATTCTTGTACACCTTCTCCCTATTCTAG
CCGAAGGTACTGCCATTTCTTGAGCTGCTCCTCTCCATAGCCTATTGGATAGAATTGCGATTTAA
ACAATGTCTTGAAGTCCTCCCATTTTGTAACCATGGGCTTATTGCCTGGGGGTGGGCAGGACCTA
CCTTACCGACCGACTGCCTGAAACCCTTCCAACCAACTGACCTTTCCCTCCCTCGCCCATATGAA
TGAAGCGTGAAACCCTTTCATCAATTTCTGAACCACTGCTCCGAATGAAACGGGTTTGGGTGGGC
TTGGAAGAGCCAGGGAATGTGAAACAGCGGACAACTGAACCTGGTTCTAAAGGCATGCTTTCTCC
GATGCATTTGATTAGCCACGCAACGCCCCTATTTAACTAAACTAT
Found at i:1030027 original size:27 final size:26
Alignment explanation
Indices: 1029997--1030059 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
1029987 GGTAACAGTT
*
1029997 GTATTCCCA-CAGGTTGTTGTGAGCAGA
1 GTATTCCCACCAAG-TGTT-TGAGCAGA
*
1030024 GTATTCCAAGCCAAGTGTTTGAGCAGA
1 GTATTCCCA-CCAAGTGTTTGAGCAGA
1030051 GTATTCCCA
1 GTATTCCCA
1030060 TCCCAGGTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 24 0.77
28 4 0.13
29 3 0.10
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
GTATTCCCACCAAGTGTTTGAGCAGA
Left flanking sequence: Indices 1029497 -- 1029996
GCAATATGATCCCATCAACCGAGCAGGGCATCTAAGGTCTGATATTCGTGCCTCCAAAGACCTAA
CCTAATGGGTCCTGTCAAAATCTAATTATTGTAGGTGTATGGTATCAAAGGTAAGTGCTTTTAAG
ACTGTCCCCTCCCCGACTGGTCTTCCTGGTCTCATTCCTGGGTTGGTAAGTAACTAAATCCATCA
TTGTAGGGTTCCAGCAGTAATCATAGAAGGGTAAGGCACTAATTGATCAATCCATGCCATCCCCA
ATCTGTAGCTCCAAAGGTCTTCTAGTAGTGCCTCCAAAGAGCTCATGGTCTAGAGCTTAAACATA
TAAGGTATATCTGGGAGGTGGGTGAGTGTCTAAAGCAAGGTAAGTAATAGCAGTGCCTCCAAAGA
CCTCATGTTCTAGGGCTGAAACGTAGAAGGTATTGTCAGTAGAGCTACTCTCGTGTTCTTGGCTG
GCTGAATCCAAATGAAGTTGGTGGGCAGGAACCCAGGTAACAGTT
Right flanking sequence: Indices 1030060 -- 1030559
TCCCAGGTTCGCGAACCAAGCCAAGTAGGTGAGCAGGAGCCAAGTTGGTGAAATAGGCCCGCCCA
GTGGGTGAGCAGGAGTAGGCCCGGCCAAGTAGGTGAGCAGGTGGGAGTATAGCTGGTAAAGTCCT
GAATGTCCAGTCCAGTCCTGTTGTTCGTTGTCCCCAGGGCTAAGGTTGGCAGGGGGTTACGGGGG
CCCCTGTAAGTTCGTGTAGGTGGGAGGGGGGCAGTTGGGAACATCCATCAGTTGGGAACGCTGGG
GTCTATGGATAAATCAAGTTCATCAAGTAAGAAGAATCAAGCAACAACCAACCAACACTCATCAA
CTAAGAGGTAACAGGTTTGGTATAATCACGTCTATAAGCAACTAAGTTAAGCACAACCTAGCTGT
TATGTCTTGTGTTATAATTGTTGGGCAGGACCCCCGCATAGGCCCAGGTAACATTCGTAGGCCCA
GCCAAGTTAGCAGAGTATTCCCACCCAGGTGAGCGAGCCCAGCCT
Found at i:1030143 original size:27 final size:28
Alignment explanation
Indices: 1030113--1030165 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
1030103 GTTGGTGAAA
* *
1030113 TAGGCCC-GCCCAGTGGGTGAGCAGGAG
1 TAGGCCCGGCCAAGTAGGTGAGCAGGAG
1030140 TAGGCCCGGCCAAGTAGGTGAGCAGG
1 TAGGCCCGGCCAAGTAGGTGAGCAGG
1030166 TGGGAGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.21, C:0.25, G:0.43, T:0.11
Consensus pattern (28 bp):
TAGGCCCGGCCAAGTAGGTGAGCAGGAG
Left flanking sequence: Indices 1029613 -- 1030112
TAAGTGCTTTTAAGACTGTCCCCTCCCCGACTGGTCTTCCTGGTCTCATTCCTGGGTTGGTAAGT
AACTAAATCCATCATTGTAGGGTTCCAGCAGTAATCATAGAAGGGTAAGGCACTAATTGATCAAT
CCATGCCATCCCCAATCTGTAGCTCCAAAGGTCTTCTAGTAGTGCCTCCAAAGAGCTCATGGTCT
AGAGCTTAAACATATAAGGTATATCTGGGAGGTGGGTGAGTGTCTAAAGCAAGGTAAGTAATAGC
AGTGCCTCCAAAGACCTCATGTTCTAGGGCTGAAACGTAGAAGGTATTGTCAGTAGAGCTACTCT
CGTGTTCTTGGCTGGCTGAATCCAAATGAAGTTGGTGGGCAGGAACCCAGGTAACAGTTGTATTC
CCACAGGTTGTTGTGAGCAGAGTATTCCAAGCCAAGTGTTTGAGCAGAGTATTCCCATCCCAGGT
TCGCGAACCAAGCCAAGTAGGTGAGCAGGAGCCAAGTTGGTGAAA
Right flanking sequence: Indices 1030166 -- 1030665
TGGGAGTATAGCTGGTAAAGTCCTGAATGTCCAGTCCAGTCCTGTTGTTCGTTGTCCCCAGGGCT
AAGGTTGGCAGGGGGTTACGGGGGCCCCTGTAAGTTCGTGTAGGTGGGAGGGGGGCAGTTGGGAA
CATCCATCAGTTGGGAACGCTGGGGTCTATGGATAAATCAAGTTCATCAAGTAAGAAGAATCAAG
CAACAACCAACCAACACTCATCAACTAAGAGGTAACAGGTTTGGTATAATCACGTCTATAAGCAA
CTAAGTTAAGCACAACCTAGCTGTTATGTCTTGTGTTATAATTGTTGGGCAGGACCCCCGCATAG
GCCCAGGTAACATTCGTAGGCCCAGCCAAGTTAGCAGAGTATTCCCACCCAGGTGAGCGAGCCCA
GCCTATTGGGTGAGCCCAGCCAAGTAGGAACATGAGCCTTATTTACTTTAGTACTTGCCTTTGTT
TCCTGCAGAGCCTAGAATCGAGGAAGGCCTAGTCCCTCCTACCAC
Found at i:1034494 original size:20 final size:20
Alignment explanation
Indices: 1034449--1034495 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
1034439 CCTGCGCCGG
*
1034449 TCAACCCGGTAAGGTCCTTA
1 TCAACCCGGTAAGGTCCTGA
*
1034469 TAAACCCGGTCAA-GTCCTGA
1 TCAACCCGGT-AAGGTCCTGA
1034489 TCAACCC
1 TCAACCC
1034496 CCCTTATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (20 bp):
TCAACCCGGTAAGGTCCTGA
Left flanking sequence: Indices 1033949 -- 1034448
GTGGTTCAAACAAACTATGGTACCTGCTTAGCTTAGCCCGAATGCCCCCACTGATCATTGGTTAG
ATCCGATCCCCTCTATTGAATGGGGGCCCGGCTCGTTCCTCTCCCGTTGGTCGAGTCACTTAACG
TACCTCACTTTTTCCGGATGATGCATCTCCACGAAGATCCACTATTTTTAGACCCGCACAATCCC
AGAAGATCGCCTCCTCGGGGAGTAGGTCTACGATCTTGTCTTACTATTTGTTGGGGGTGGGGCAG
TTGCTCGAGCTAGCTTAAGAACGTTGTTTATGGCTGCTCAATAATAAGGTCGGCCTGAGCGGACA
GGCAGGCGTCTACTCTACCAAATCGTTACCTTCGCATAGCTCAGGTAAGGTCACTTACGCATAGC
TCAGGTAAGGTCATCCCCTATATTTATTCCCCTCAATCGTTATAGTTCGGGAAGATATGCGCCCT
TTATTTCTTTCCCTCAAAGAGCTAGAAGGTAAGGTCCTGCGCCGG
Right flanking sequence: Indices 1034496 -- 1034995
CCCTTATCTAACGGGTCCTTTATTTCAGGTCAATCCTTCGAAGACTTGTCCTGATTAACCCTTAT
TGCTATTCTTTCTATTTTCCCCCCCATCAGCGATAATATATGCTTTTCAGATCAATACGGGGCGT
CTCAAAAGTAAGCAGGCCTTGAAAGGAAATATTATTTGAGGTCCGATTCATACCCTCTTATTTAA
TGAAGAAGGGCGAAGTCAACCCTCCATCTCCTTATAAATACTCTTTTTTACCCGAGTTTGGCGAA
GTCAACCCAGAAAGGTCGGTCCTTGCCCGATGCGGGCAAGCAATTCCCTGCAATGCCCTCTTTAT
CGAAGTCTTTACCTAACGACTGATACCTATTCGTTAGCTAAGGGGGTGGATAAGGTCGTTTGTCA
CAAGGGCCTTGCTATGACTTATGTAACGAAATGTACACCTAACGTCTTAATTTCATTCGGTAGCT
AAGTGGGATAGAAGGAGATATCTGTTTTAGGCCCCGCTACCTCAC
Found at i:1035927 original size:23 final size:23
Alignment explanation
Indices: 1035901--1035949 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
1035891 CATCAAACCA
1035901 CTTCATCTGCTATTCAATTTCTC
1 CTTCATCTGCTATTCAATTTCTC
1035924 CTTCATCTGCTATTCAATTTCTC
1 CTTCATCTGCTATTCAATTTCTC
1035947 CTT
1 CTT
1035950 TGTTTTGTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.16, C:0.31, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTCATCTGCTATTCAATTTCTC
Left flanking sequence: Indices 1035401 -- 1035900
ATCCTTCCCATCCCTGCTCGGACCAGATCAAGCCGGATCAAACTAGATTGATACCCTTCCTTCCG
TAGCTCTCTAATCAAGTTGAAGGGAAGAAGCTCCCGAACGAGCGTTTCCCACTTGATTCCAATTT
CATCGCGAACGAAACGGGAAACATGAGAATCACCGGAATCAGAGCTCCTCCTATCAACAGCCGAA
TAAAATGTACGCTCAGGGCCCCATCGGGATGAATCGGGTCAAGCTCAAGGTCAGCAGGCAAGGTC
AAGATCGATCGGTGTCCCTAGCCGTTATCCCCCGTCGGAAAGAGATAAAGAGAAATAAAAGAAAA
GAAGGCTGATAAAGCAGCGAACGAAGAAAAGAGAGAAGGAGGGAGCACCAGAGGGAGGGGGAAGG
GGGACCTTTAATAAAGTTTTGGCAAATTCATCTTTTTTAGGTACTTTAAGTGATATCAGCTAGGA
CAGGACCTTACCTCATCAAACAAGCTAGCATGCCTCATCAAACCA
Right flanking sequence: Indices 1035950 -- 1036449
TGTTTTGTTGGTTTCACGACTTCAGCTAGGGGTGCTAGGATGGAGTAAGGAGGCTAGGAGGTAAG
GCTAGGAGGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAGGGCTAGGAAGAAGGGTCGGG
ATGGAATGCTAGGAGGGAAGGGGGATGGGTGCGGATATCTAGGTTCATGAGCTGCATGTTTCAAT
TCAATCTGGATCAAGGCTGCATGCTTTGGCGAATCAATATGGGAGCTGGGGAATCATTATATGGG
TTCACGATCTGGCTTCGGCAATAGATGGGTTGTGTGATACTGATCGATGGGTTTTTAGCGCCTAT
CTATCATGCCTCCGGGTTCAAGAACTCGCATTTTTCTTGAGCCAAATAGCTGATTCCCAGCAAGT
TCTGAATGCTAATTCATTCCATAGCTTGCTTGCCCGACCTAAGAAGTACGAGTTCCTAGTGTGTG
CGCCCGCCCGAAGTACGGGGAAAACAAGGTGGCCGCTGCTTTTCT
Found at i:1036018 original size:13 final size:12
Alignment explanation
Indices: 1036000--1036060 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 12
1035990 TGGAGTAAGG
1036000 AGGCTAGGAGGTA
1 AGGCTAGGAGG-A
1036013 AGGCTAGGAGGA
1 AGGCTAGGAGGA
*
1036025 AGGGGGC-GGGATGGA
1 A---GGCTAGGA-GGA
1036040 AGGCTAGGAGGGA
1 AGGCTAGGA-GGA
1036053 AGGCTAGG
1 AGGCTAGG
1036061 GCTAGGAAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
12 5 0.12
13 25 0.62
14 3 0.08
15 7 0.17
ACGTcount: A:0.28, C:0.08, G:0.54, T:0.10
Consensus pattern (12 bp):
AGGCTAGGAGGA
Left flanking sequence: Indices 1035500 -- 1035999
CGAACGAGCGTTTCCCACTTGATTCCAATTTCATCGCGAACGAAACGGGAAACATGAGAATCACC
GGAATCAGAGCTCCTCCTATCAACAGCCGAATAAAATGTACGCTCAGGGCCCCATCGGGATGAAT
CGGGTCAAGCTCAAGGTCAGCAGGCAAGGTCAAGATCGATCGGTGTCCCTAGCCGTTATCCCCCG
TCGGAAAGAGATAAAGAGAAATAAAAGAAAAGAAGGCTGATAAAGCAGCGAACGAAGAAAAGAGA
GAAGGAGGGAGCACCAGAGGGAGGGGGAAGGGGGACCTTTAATAAAGTTTTGGCAAATTCATCTT
TTTTAGGTACTTTAAGTGATATCAGCTAGGACAGGACCTTACCTCATCAAACAAGCTAGCATGCC
TCATCAAACCACTTCATCTGCTATTCAATTTCTCCTTCATCTGCTATTCAATTTCTCCTTTGTTT
TGTTGGTTTCACGACTTCAGCTAGGGGTGCTAGGATGGAGTAAGG
Right flanking sequence: Indices 1036061 -- 1036560
GCTAGGAAGAAGGGTCGGGATGGAATGCTAGGAGGGAAGGGGGATGGGTGCGGATATCTAGGTTC
ATGAGCTGCATGTTTCAATTCAATCTGGATCAAGGCTGCATGCTTTGGCGAATCAATATGGGAGC
TGGGGAATCATTATATGGGTTCACGATCTGGCTTCGGCAATAGATGGGTTGTGTGATACTGATCG
ATGGGTTTTTAGCGCCTATCTATCATGCCTCCGGGTTCAAGAACTCGCATTTTTCTTGAGCCAAA
TAGCTGATTCCCAGCAAGTTCTGAATGCTAATTCATTCCATAGCTTGCTTGCCCGACCTAAGAAG
TACGAGTTCCTAGTGTGTGCGCCCGCCCGAAGTACGGGGAAAACAAGGTGGCCGCTGCTTTTCTG
CATCGTAATTACGTATAGAAAAGCTAATAACAAAACTAAGGCGTGTAACTTGTAAGAAGAGGTTT
CAGGAGTGTATCCAGTGGTTGTGTGGAAAGGCAGTAAGAAAGTAA
Found at i:1036045 original size:40 final size:43
Alignment explanation
Indices: 1036000--1036100 Score: 136
Period size: 45 Copynumber: 2.4 Consensus size: 43
1035990 TGGAGTAAGG
*
1036000 AGGCTAGGAGGTAAGGCTA-GG-AGGAAG-GGGGCGGGATGGA
1 AGGCTAGGAGGGAAGGCTAGGGCAGGAAGAGGGGCGGGATGGA
*
1036040 AGGCTAGGAGGGAAGGCTAGGGCTAGGAAGAAGGGTCGGGATGGA
1 AGGCTAGGAGGGAAGGCTAGGGC-AGGAAG-AGGGGCGGGATGGA
*
1036085 ATGCTAGGAGGGAAGG
1 AGGCTAGGAGGGAAGG
1036101 GGGATGGGTG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
40 18 0.34
41 2 0.04
43 6 0.11
45 27 0.51
ACGTcount: A:0.29, C:0.08, G:0.52, T:0.11
Consensus pattern (43 bp):
AGGCTAGGAGGGAAGGCTAGGGCAGGAAGAGGGGCGGGATGGA
Left flanking sequence: Indices 1035500 -- 1035999
CGAACGAGCGTTTCCCACTTGATTCCAATTTCATCGCGAACGAAACGGGAAACATGAGAATCACC
GGAATCAGAGCTCCTCCTATCAACAGCCGAATAAAATGTACGCTCAGGGCCCCATCGGGATGAAT
CGGGTCAAGCTCAAGGTCAGCAGGCAAGGTCAAGATCGATCGGTGTCCCTAGCCGTTATCCCCCG
TCGGAAAGAGATAAAGAGAAATAAAAGAAAAGAAGGCTGATAAAGCAGCGAACGAAGAAAAGAGA
GAAGGAGGGAGCACCAGAGGGAGGGGGAAGGGGGACCTTTAATAAAGTTTTGGCAAATTCATCTT
TTTTAGGTACTTTAAGTGATATCAGCTAGGACAGGACCTTACCTCATCAAACAAGCTAGCATGCC
TCATCAAACCACTTCATCTGCTATTCAATTTCTCCTTCATCTGCTATTCAATTTCTCCTTTGTTT
TGTTGGTTTCACGACTTCAGCTAGGGGTGCTAGGATGGAGTAAGG
Right flanking sequence: Indices 1036101 -- 1036600
GGGATGGGTGCGGATATCTAGGTTCATGAGCTGCATGTTTCAATTCAATCTGGATCAAGGCTGCA
TGCTTTGGCGAATCAATATGGGAGCTGGGGAATCATTATATGGGTTCACGATCTGGCTTCGGCAA
TAGATGGGTTGTGTGATACTGATCGATGGGTTTTTAGCGCCTATCTATCATGCCTCCGGGTTCAA
GAACTCGCATTTTTCTTGAGCCAAATAGCTGATTCCCAGCAAGTTCTGAATGCTAATTCATTCCA
TAGCTTGCTTGCCCGACCTAAGAAGTACGAGTTCCTAGTGTGTGCGCCCGCCCGAAGTACGGGGA
AAACAAGGTGGCCGCTGCTTTTCTGCATCGTAATTACGTATAGAAAAGCTAATAACAAAACTAAG
GCGTGTAACTTGTAAGAAGAGGTTTCAGGAGTGTATCCAGTGGTTGTGTGGAAAGGCAGTAAGAA
AGTAAGGGTTGTGTCATGCCGTCCGGAAAGATAAGTTTATAGCAG
Found at i:1036091 original size:45 final size:46
Alignment explanation
Indices: 1036014--1036100 Score: 140
Period size: 45 Copynumber: 1.9 Consensus size: 46
1036004 TAGGAGGTAA
*
1036014 GGCTAGGAGGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAG
1 GGCTAGGAAGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAG
* *
1036060 GGCTAGGAAGAA-GGGTCGGGATGGAATGCTAGGAGGGAAGG
1 GGCTAGGAAGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGG
1036101 GGGATGGGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
45 27 0.71
46 11 0.29
ACGTcount: A:0.28, C:0.08, G:0.54, T:0.10
Consensus pattern (46 bp):
GGCTAGGAAGAAGGGGGCGGGATGGAAGGCTAGGAGGGAAGGCTAG
Left flanking sequence: Indices 1035514 -- 1036013
CCACTTGATTCCAATTTCATCGCGAACGAAACGGGAAACATGAGAATCACCGGAATCAGAGCTCC
TCCTATCAACAGCCGAATAAAATGTACGCTCAGGGCCCCATCGGGATGAATCGGGTCAAGCTCAA
GGTCAGCAGGCAAGGTCAAGATCGATCGGTGTCCCTAGCCGTTATCCCCCGTCGGAAAGAGATAA
AGAGAAATAAAAGAAAAGAAGGCTGATAAAGCAGCGAACGAAGAAAAGAGAGAAGGAGGGAGCAC
CAGAGGGAGGGGGAAGGGGGACCTTTAATAAAGTTTTGGCAAATTCATCTTTTTTAGGTACTTTA
AGTGATATCAGCTAGGACAGGACCTTACCTCATCAAACAAGCTAGCATGCCTCATCAAACCACTT
CATCTGCTATTCAATTTCTCCTTCATCTGCTATTCAATTTCTCCTTTGTTTTGTTGGTTTCACGA
CTTCAGCTAGGGGTGCTAGGATGGAGTAAGGAGGCTAGGAGGTAA
Right flanking sequence: Indices 1036101 -- 1036600
GGGATGGGTGCGGATATCTAGGTTCATGAGCTGCATGTTTCAATTCAATCTGGATCAAGGCTGCA
TGCTTTGGCGAATCAATATGGGAGCTGGGGAATCATTATATGGGTTCACGATCTGGCTTCGGCAA
TAGATGGGTTGTGTGATACTGATCGATGGGTTTTTAGCGCCTATCTATCATGCCTCCGGGTTCAA
GAACTCGCATTTTTCTTGAGCCAAATAGCTGATTCCCAGCAAGTTCTGAATGCTAATTCATTCCA
TAGCTTGCTTGCCCGACCTAAGAAGTACGAGTTCCTAGTGTGTGCGCCCGCCCGAAGTACGGGGA
AAACAAGGTGGCCGCTGCTTTTCTGCATCGTAATTACGTATAGAAAAGCTAATAACAAAACTAAG
GCGTGTAACTTGTAAGAAGAGGTTTCAGGAGTGTATCCAGTGGTTGTGTGGAAAGGCAGTAAGAA
AGTAAGGGTTGTGTCATGCCGTCCGGAAAGATAAGTTTATAGCAG
Found at i:1039379 original size:24 final size:26
Alignment explanation
Indices: 1039347--1039397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1039337 GGGTTCCTTC
*
1039347 TAAAGAATAGC-T-ATCAAAAGTTTA
1 TAAAGAATAGCATAATCAAAAGGTTA
1039371 TAAAGAATAGCATAATCAAAAGGTTA
1 TAAAGAATAGCATAATCAAAAGGTTA
1039397 T
1 T
1039398 TCATAAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 11 0.46
25 1 0.04
26 12 0.50
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAAGAATAGCATAATCAAAAGGTTA
Left flanking sequence: Indices 1038847 -- 1039346
CTTCTTCTATCTAGGCGCTCGCTCCGTGAATGACAAAATAAATAGAACCTCCTTGGAATGATGGG
GGGGGGGCGGTAGGGTTTGAAAGAAGGGGTAGGAGTCGCACCAAAGCGGGTAAGGTCCGGGGGTA
AGCAAGCCAAAAATCCGGACAGCTTGCCATCCATACAACCAGCCCATGCAGCACGCCATCCATCC
CAGCGATCCGAGCAATGCCAGCCAGCTCGGAAGCAAGCCACGGGGTCTCCAGTCTGCCTCACCAT
AAATCTACAGCTCGGAAGCTCCGTTTCTTTCCCGGTACATCAAAAGTGAAGTAAGAGCATATCTA
AAGGGTATAATAAGGCAGGGCGGTTAGCGGGTTCGGCAGGTAACTTCTAGGCTTAGGCGGGTGAG
GTCAAAACCTCTTCTAAAGAAGAACCCCATCCCCATATGAAACTAAAGGTGAGGTTCTCAAGAAG
ATCCTATGTGATAAAGAATATATCCCTCAAAGGGTGGGTTCCTTC
Right flanking sequence: Indices 1039398 -- 1039897
TCATAAAGAAGCTCAATAAGAAGGTGATTAAATCAGATCCCTGAACAACCTAAATGGGTAAGGGT
CTGGCACAAAGGGAAGGGTCTGTCTGTCTGTCCTCTCCAAACATGAGGGTCCAGGTCTGTCTGTC
CTCTCCGAACATGGGCTGGGTAGTATGAAACTTTCAGGGTACGGTTCTGGATGACCTAAACCTTG
TTGGAACTGTCATTCAATGTCTGAGGTGAAAAGATGTCTGTCAAAACCTTTTGGACCACGTCCGG
CAAACTGTCATTGTTATAAAGAATCGCCTTCAAAAGGTCCCCTTCCTTCGAAAGAACCTCAAAAG
GCGGCACCCATAGAAAGAAGATCCCCATATGACGTATATAAAGATCTAACTTGCATCAAGAAGAT
ATAACATATATAAATAAGAGCCCAAAGGTGAGGTTCAAAATACTAATAAAAAGGCATGCATGGGG
TGAGGTTGATCATCCATATAAAAACCAAGGGGTTTTTTTCTCGAT
Found at i:1051248 original size:13 final size:14
Alignment explanation
Indices: 1051225--1051254 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1051215 GAGTTACTTT
1051225 GTTCGTTTGTGTAG
1 GTTCGTTTGTGTAG
1051239 GTTC-TTTGTGTAG
1 GTTCGTTTGTGTAG
1051252 GTT
1 GTT
1051255 ATCCTGCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.07, C:0.07, G:0.33, T:0.53
Consensus pattern (14 bp):
GTTCGTTTGTGTAG
Left flanking sequence: Indices 1050725 -- 1051224
AACTCCGAGACACCGAACGAATTCCCTAGGACTGCCATGACTCGCATGATACAAACCACGAAAAA
TATGGAGGTAAACCACAATGGAAAACATACTTGCCCCATTAGCATGCATATAACGAAGCAACCGG
CCCCCTTCAACATCTCTCATGATGTGTTCTACGCTGTTGAAAGCTAGATCCACATGAGGTGTGTG
ATGCATAGCTGGAAAAACGCCGGTCACTATCTGAATGGCTGGACGAATACCAGCTAACGGACCAA
ACCCCCACCAATAACTTAGATTGCTCGGGGTCGGATGATCTATCAAATGCTGGTTAAGTGTAGAT
AATATGGGTTGTTTGGGAATAGGGAATCGTTGTTTTCCCATAGTCATGTCTCCTATATAACTCTT
GTTCCCCAATTCGATCGACGTTATCCCCCTCGACTCGACGAAGAAATAAGAAACGAGCGAACAGC
GAGTCACCTGAGCTACGTGAAGGGAGGGTACGTGCGAGTTACTTT
Right flanking sequence: Indices 1051255 -- 1051754
ATCCTGCCTATTTTTAGCCCCGGGAAGGCAACGTAGATCGATCTATAGTGACAGACAGAATGTAG
TATAGATCGATCTACGTTGCCGTAACAAATTCTGAACACAAATTCTGGTATATATAACCTTATTG
ATTCATTGATCTCATTTTGGGCGAGGGGCAGCGAGTCACCTGAGCTACACGTTTTTCGGGCGTGA
AAAGCCCCCTAACGACTTAATTCGGAATCACTGTGCTTTTACCCGTGACCCCCCTACCCCAAGTA
AGTCAAGGGGTCCCGACCCACCGGTCGGTAGGTAGGGGGGGGAAAAAGGCGCAAGCACCCCCTTG
GGTGGGGGTGGGGGGGAACCCACCTTGCGCAGCTTTGGAAAGGAGATAATTCGTGAAACTACGTC
ACTCTTGTAAACTCTTATTGATTGAACGAGAGAGAGTAAATATGATACTGGCGTTGGTTTTACCA
ACGAAAAGTTGGCGCTATGTCGATTCGAAAGGTTTCCCAAGTTCT
Found at i:1051809 original size:22 final size:23
Alignment explanation
Indices: 1051783--1051832 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
1051773 CCCTATCCGC
*
1051783 AAGGGGAAACTCCTATATT-TCT
1 AAGGGGAAACTCCTATATTATAT
* *
1051805 AA-GGGAAGCTCCTCTATTATAT
1 AAGGGGAAACTCCTATATTATAT
1051827 AAGGGG
1 AAGGGG
1051833 GGGCGGTTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 14 0.61
22 6 0.26
23 3 0.13
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (23 bp):
AAGGGGAAACTCCTATATTATAT
Left flanking sequence: Indices 1051283 -- 1051782
CAACGTAGATCGATCTATAGTGACAGACAGAATGTAGTATAGATCGATCTACGTTGCCGTAACAA
ATTCTGAACACAAATTCTGGTATATATAACCTTATTGATTCATTGATCTCATTTTGGGCGAGGGG
CAGCGAGTCACCTGAGCTACACGTTTTTCGGGCGTGAAAAGCCCCCTAACGACTTAATTCGGAAT
CACTGTGCTTTTACCCGTGACCCCCCTACCCCAAGTAAGTCAAGGGGTCCCGACCCACCGGTCGG
TAGGTAGGGGGGGGAAAAAGGCGCAAGCACCCCCTTGGGTGGGGGTGGGGGGGAACCCACCTTGC
GCAGCTTTGGAAAGGAGATAATTCGTGAAACTACGTCACTCTTGTAAACTCTTATTGATTGAACG
AGAGAGAGTAAATATGATACTGGCGTTGGTTTTACCAACGAAAAGTTGGCGCTATGTCGATTCGA
AAGGTTTCCCAAGTTCTTCCTTTCTTTCCCGTTATCCCTATCCGC
Right flanking sequence: Indices 1051833 -- 1052332
GGGCGGTTCCACACTCTGACCTCAACGAACGAAACAACCTTCGCTATTACTATTATATAAGGTGA
AACCGAGCGCAGGGGAAGGGGGCGCTCCAATACCAATGAGCAACAGTTTTAATTCTCTTTTTTCC
CCTCAAAGAGCTCAGGGTTATACCTTTCCCGTAGCGATAAGGTTATCCTTATCTCTTCTATCTTA
TTTCTTCCCCTCAAAGAGCGCTTATAAAGTGACTCTTTCTTCAAAAGTCCATTTCTTCCAGTCAT
TCTTTATATATGTAATAACACGCTTTTCGGTGTGAGTCGAAGGGTGAGGAGCGAAAAGCGCTCAC
CTGAAGGATGCAGAATCAACAGCGGAATCGACTGCTTAATCTGGACCTGTAACTACGACGGCTTC
TACTTCTCCTTGCTACTCGTGCTGGTGAATCTGGAACTGGATCCCTGCTGCTATGACTGGGAATT
ATAGCTTTCAAAAAGGATTGAATAATATTGATCTGGAACATAAGA
Found at i:1057588 original size:19 final size:19
Alignment explanation
Indices: 1057564--1057601 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1057554 GTCGGATGCC
1057564 CCGGTGCGAGTGCCAGTAT
1 CCGGTGCGAGTGCCAGTAT
*
1057583 CCGGTGCTAGTGCCAGTAT
1 CCGGTGCGAGTGCCAGTAT
1057602 AGATGGCTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (19 bp):
CCGGTGCGAGTGCCAGTAT
Left flanking sequence: Indices 1057064 -- 1057563
GAGATGGCTGATCTTGTCCGTCGAGGAGATAAAACCCAATTCAATAGGTATGGTTCACTCAACTC
ACTAGAATTTTGATTCTGTCCTCGAGGAACGAAAGTGGCTCGACCGGTGAGGTACGTTAAGTGAC
TCACCTCCCGATGGTCGGACGAGGTACGTTAAGTGACTCGACCCAAAAGCGAGGAACGGGCGCGC
GTCCCCAACCATCTATAGATGAGATGCCGCAACTCATGTCATTAACCCTATCAATCATTGGCGGG
TGCCTATTACCTCATTATTGCATTGGTTACTCCCCAATGACCCTTCCTTTATAGGTGAATGAATC
TCCATCCGGTTTTCTACCTCTATATAACGAAGAAATAGATAGATGATGGCCCAGGAAACTAGTTA
GTGCTCTCCATTCCATCTGAACTGGAAATCGCGTTATCACGCTCTCCTTCACTTGTAATTGTGAC
TCGTCGATTAGCCCAGCTTGGCTTGGTTCGGCTTGGTCGGATGCC
Right flanking sequence: Indices 1057602 -- 1058101
AGATGGCTCATGCTACGGAGTAGTGGTATAGAAAAGTAGTGCCCTTCAACATTGATGCGATCGGT
AGCAATTGAATGAATTGATAGATTGGGGTGAGATAGAAGCCGATACCTCCTTCGTTAATGCTTGC
TCCCAGAACGACTTAACTGAACCGGGAAACGAATAGTTAATGTTTGGCTTGCTCTCAATCCACCG
GACTGGCGGCGCCTTTCAATCGCTAATGCTCGGCCGGCAATAAATCATCTAAGTAATTCTATTTT
CAACTTCGAAGTGAATCAATAAATGATGTGAGGGTAGAAAGCAAGAAATGAAGAAAGCTGTCCCA
GTAGAGGCGGGAGGGATGCAAAGTCAAACCTCTCCCCTTCGGCTAGTAAGCTAGAAGATACGTCT
GCCTCTAGATCTGGAGTGATGGGTGGGAGACGCCTTGTTCCTAAGGAAATAGCAGTGGGCTGTGC
CGGAATAGGGATGGGCATAGTTTACTTTCCTTTATTTCCATAATG
Found at i:1064530 original size:16 final size:16
Alignment explanation
Indices: 1064505--1064535 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1064495 CATTTAAGAC
1064505 ACTTACCCATGAATAA
1 ACTTACCCATGAATAA
*
1064521 ACTTATCCATGAATA
1 ACTTACCCATGAATA
1064536 CACTATTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (16 bp):
ACTTACCCATGAATAA
Left flanking sequence: Indices 1064005 -- 1064504
ACGCTGGAAAAAGTCTGCTCACGGGGAAATAAACTGTAACTCGTAAAATATCTAGCTTTGGATCT
TTATCTGAGCTAAGTGGTGACTCTCGAAAAGGCTCTGTCCTCGATGCTCGGTAAACTACTCGATC
TGTATCCACCGGTAAAACAACAACGTTTATGATATATTCTAAAATTTTTGGTTTACTGGTGGTGG
CCTGCCTTTGCTCTGGCCTTTATAAAAGCCCAGAAAAGCCGGTTCGCTGCTTTCTATGCTCCTTT
TATTGCCTCTGCCTATAATGCCCTTGATTCCTCCCACTAAGGAGTGGTTGGCTGAAAACAATAGA
TAATTTACAAGCCTCAGAGCTATGGAGAGATGGATGGAATCATACATGGGAAGGACCTTAAAGCA
TCTCATTTAGCCGCTTGTCTTCACACAAATCACGTTCGACACCGTGGTGGAGGATTATGACTCGA
CCTATGTCAACGACGCGTTTTAAGCTCTCAAATAACATTTAAGAC
Right flanking sequence: Indices 1064536 -- 1065035
CACTATTCACCCCAGTTTGGAACAGTAATCATCCTAGCCCGGAAGATTAGCCGTTTGACCCATAG
CCCCTATTGCCCCAGGCCAGGAGCCATGGGGTTCCGTAAAGGTCCGTCCATGAGCCATGAGGTTC
TGTATTGAGAAAATTATTCCTCCTTAACTCCTTTTTAACTCCTCCTTAATTCCTTCTTCACTTCT
CCTTCTTGAGAACTTATTCTTGAGGTACTACTCCATGAAGAACTTATTTTTATCCAGACCATCCA
TCCATCCCAGCCAGCAATTGGTACATTGGTAGAAGAAGCCACCAGCAGCCATTTACATTAACATT
GACATTGGTGCGAAGAAATACCAGCCATTGGTACATTGGTGAAGAAGCCATTGATTAAATTGCCG
AAGCAGTCACCCTTCACGGCTTGACAACCTTCCCTTCACGGCAGAAATGGCTCAGCTTGTGGACA
TCCTAAGCTTGGACGAATGGCTCTTACTCACTCTTACTCAGTTCT
Found at i:1064710 original size:22 final size:22
Alignment explanation
Indices: 1064683--1064734 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
1064673 AGAAAATTAT
*
1064683 TCCTCCTTAACTCCTTTTTAAC
1 TCCTCCTTAACTCCTTCTTAAC
* *
1064705 TCCTCCTTAATTCCTTCTTCAC
1 TCCTCCTTAACTCCTTCTTAAC
*
1064727 TTCTCCTT
1 TCCTCCTT
1064735 CTTGAGAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.13, C:0.38, G:0.00, T:0.48
Consensus pattern (22 bp):
TCCTCCTTAACTCCTTCTTAAC
Left flanking sequence: Indices 1064183 -- 1064682
TGGTTTACTGGTGGTGGCCTGCCTTTGCTCTGGCCTTTATAAAAGCCCAGAAAAGCCGGTTCGCT
GCTTTCTATGCTCCTTTTATTGCCTCTGCCTATAATGCCCTTGATTCCTCCCACTAAGGAGTGGT
TGGCTGAAAACAATAGATAATTTACAAGCCTCAGAGCTATGGAGAGATGGATGGAATCATACATG
GGAAGGACCTTAAAGCATCTCATTTAGCCGCTTGTCTTCACACAAATCACGTTCGACACCGTGGT
GGAGGATTATGACTCGACCTATGTCAACGACGCGTTTTAAGCTCTCAAATAACATTTAAGACACT
TACCCATGAATAAACTTATCCATGAATACACTATTCACCCCAGTTTGGAACAGTAATCATCCTAG
CCCGGAAGATTAGCCGTTTGACCCATAGCCCCTATTGCCCCAGGCCAGGAGCCATGGGGTTCCGT
AAAGGTCCGTCCATGAGCCATGAGGTTCTGTATTGAGAAAATTAT
Right flanking sequence: Indices 1064735 -- 1065234
CTTGAGAACTTATTCTTGAGGTACTACTCCATGAAGAACTTATTTTTATCCAGACCATCCATCCA
TCCCAGCCAGCAATTGGTACATTGGTAGAAGAAGCCACCAGCAGCCATTTACATTAACATTGACA
TTGGTGCGAAGAAATACCAGCCATTGGTACATTGGTGAAGAAGCCATTGATTAAATTGCCGAAGC
AGTCACCCTTCACGGCTTGACAACCTTCCCTTCACGGCAGAAATGGCTCAGCTTGTGGACATCCT
AAGCTTGGACGAATGGCTCTTACTCACTCTTACTCAGTTCTTACTCTTCTGAATATTCTTATTAT
TCTGAATGGATAGTCTAACCCTTAACGGCTTGAACGGCTTTTGAACAGCTTGAACGGAATGGCTC
AGCTTGGATCAGTCTCCCTATAGCCTCTCCTCTGCTTACTCTCTCCCTAGGCTGCTTACTCTTAG
TCTGCTTACTCTCTCCTAAGCCTCCCTAAGCTGCTTACTCTCTCC
Found at i:1064714 original size:11 final size:11
Alignment explanation
Indices: 1064683--1064734 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
1064673 AGAAAATTAT
1064683 TCCTCCTTAAC
1 TCCTCCTTAAC
**
1064694 TCCTTTTTAAC
1 TCCTCCTTAAC
*
1064705 TCCTCCTTAAT
1 TCCTCCTTAAC
* *
1064716 TCCTTCTTCAC
1 TCCTCCTTAAC
*
1064727 TTCTCCTT
1 TCCTCCTT
1064735 CTTGAGAACT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.13, C:0.38, G:0.00, T:0.48
Consensus pattern (11 bp):
TCCTCCTTAAC
Left flanking sequence: Indices 1064183 -- 1064682
TGGTTTACTGGTGGTGGCCTGCCTTTGCTCTGGCCTTTATAAAAGCCCAGAAAAGCCGGTTCGCT
GCTTTCTATGCTCCTTTTATTGCCTCTGCCTATAATGCCCTTGATTCCTCCCACTAAGGAGTGGT
TGGCTGAAAACAATAGATAATTTACAAGCCTCAGAGCTATGGAGAGATGGATGGAATCATACATG
GGAAGGACCTTAAAGCATCTCATTTAGCCGCTTGTCTTCACACAAATCACGTTCGACACCGTGGT
GGAGGATTATGACTCGACCTATGTCAACGACGCGTTTTAAGCTCTCAAATAACATTTAAGACACT
TACCCATGAATAAACTTATCCATGAATACACTATTCACCCCAGTTTGGAACAGTAATCATCCTAG
CCCGGAAGATTAGCCGTTTGACCCATAGCCCCTATTGCCCCAGGCCAGGAGCCATGGGGTTCCGT
AAAGGTCCGTCCATGAGCCATGAGGTTCTGTATTGAGAAAATTAT
Right flanking sequence: Indices 1064735 -- 1065234
CTTGAGAACTTATTCTTGAGGTACTACTCCATGAAGAACTTATTTTTATCCAGACCATCCATCCA
TCCCAGCCAGCAATTGGTACATTGGTAGAAGAAGCCACCAGCAGCCATTTACATTAACATTGACA
TTGGTGCGAAGAAATACCAGCCATTGGTACATTGGTGAAGAAGCCATTGATTAAATTGCCGAAGC
AGTCACCCTTCACGGCTTGACAACCTTCCCTTCACGGCAGAAATGGCTCAGCTTGTGGACATCCT
AAGCTTGGACGAATGGCTCTTACTCACTCTTACTCAGTTCTTACTCTTCTGAATATTCTTATTAT
TCTGAATGGATAGTCTAACCCTTAACGGCTTGAACGGCTTTTGAACAGCTTGAACGGAATGGCTC
AGCTTGGATCAGTCTCCCTATAGCCTCTCCTCTGCTTACTCTCTCCCTAGGCTGCTTACTCTTAG
TCTGCTTACTCTCTCCTAAGCCTCCCTAAGCTGCTTACTCTCTCC
Found at i:1065055 original size:18 final size:18
Alignment explanation
Indices: 1065032--1065066 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1065022 TCTTACTCAG
*
1065032 TTCTTACTCTTCTGAATA
1 TTCTTACTATTCTGAATA
*
1065050 TTCTTATTATTCTGAAT
1 TTCTTACTATTCTGAAT
1065067 GGATAGTCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
TTCTTACTATTCTGAATA
Left flanking sequence: Indices 1064532 -- 1065031
AATACACTATTCACCCCAGTTTGGAACAGTAATCATCCTAGCCCGGAAGATTAGCCGTTTGACCC
ATAGCCCCTATTGCCCCAGGCCAGGAGCCATGGGGTTCCGTAAAGGTCCGTCCATGAGCCATGAG
GTTCTGTATTGAGAAAATTATTCCTCCTTAACTCCTTTTTAACTCCTCCTTAATTCCTTCTTCAC
TTCTCCTTCTTGAGAACTTATTCTTGAGGTACTACTCCATGAAGAACTTATTTTTATCCAGACCA
TCCATCCATCCCAGCCAGCAATTGGTACATTGGTAGAAGAAGCCACCAGCAGCCATTTACATTAA
CATTGACATTGGTGCGAAGAAATACCAGCCATTGGTACATTGGTGAAGAAGCCATTGATTAAATT
GCCGAAGCAGTCACCCTTCACGGCTTGACAACCTTCCCTTCACGGCAGAAATGGCTCAGCTTGTG
GACATCCTAAGCTTGGACGAATGGCTCTTACTCACTCTTACTCAG
Right flanking sequence: Indices 1065067 -- 1065566
GGATAGTCTAACCCTTAACGGCTTGAACGGCTTTTGAACAGCTTGAACGGAATGGCTCAGCTTGG
ATCAGTCTCCCTATAGCCTCTCCTCTGCTTACTCTCTCCCTAGGCTGCTTACTCTTAGTCTGCTT
ACTCTCTCCTAAGCCTCCCTAAGCTGCTTACTCTCTCCTGCTTGCCTTGGGTGTGTGGGTCTTTC
TCTCCTCTTCCGCGTGCATTAAAGCTCTCTTCTCTGGCTAGTTACTTCTTATCTGGCTATTACAC
TTGCTCTGGTGGCTACACTTACTCTGGTGGCCAGGGGCTTAGGAGAGGTGGCCTGACAGGAGGGC
TTACTGGGCCTGACAAACTTGCTTACAAACTTACTCTTTCTGGCTCTGACTCTGGCTCTGACTCT
GGGGCTGCTTAAGGGACCTCCCTAGCTGTAGGGGCGGCTTAAGAGTGCTTTCCTCCCTAGTGCTT
ACCTCCCTAGCTGCTTAGGTGGTATAGGGAGAACAAATATAGGGT
Found at i:1065316 original size:19 final size:18
Alignment explanation
Indices: 1065289--1065324 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
1065279 ATTAAAGCTC
*
1065289 TCTTCTCTGGCTAGTTACT
1 TCTTATCTGGCTA-TTACT
1065308 TCTTATCTGGCTATTAC
1 TCTTATCTGGCTATTAC
1065325 ACTTGCTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.47
Consensus pattern (18 bp):
TCTTATCTGGCTATTACT
Left flanking sequence: Indices 1064789 -- 1065288
CCATCCATCCATCCCAGCCAGCAATTGGTACATTGGTAGAAGAAGCCACCAGCAGCCATTTACAT
TAACATTGACATTGGTGCGAAGAAATACCAGCCATTGGTACATTGGTGAAGAAGCCATTGATTAA
ATTGCCGAAGCAGTCACCCTTCACGGCTTGACAACCTTCCCTTCACGGCAGAAATGGCTCAGCTT
GTGGACATCCTAAGCTTGGACGAATGGCTCTTACTCACTCTTACTCAGTTCTTACTCTTCTGAAT
ATTCTTATTATTCTGAATGGATAGTCTAACCCTTAACGGCTTGAACGGCTTTTGAACAGCTTGAA
CGGAATGGCTCAGCTTGGATCAGTCTCCCTATAGCCTCTCCTCTGCTTACTCTCTCCCTAGGCTG
CTTACTCTTAGTCTGCTTACTCTCTCCTAAGCCTCCCTAAGCTGCTTACTCTCTCCTGCTTGCCT
TGGGTGTGTGGGTCTTTCTCTCCTCTTCCGCGTGCATTAAAGCTC
Right flanking sequence: Indices 1065325 -- 1065824
ACTTGCTCTGGTGGCTACACTTACTCTGGTGGCCAGGGGCTTAGGAGAGGTGGCCTGACAGGAGG
GCTTACTGGGCCTGACAAACTTGCTTACAAACTTACTCTTTCTGGCTCTGACTCTGGCTCTGACT
CTGGGGCTGCTTAAGGGACCTCCCTAGCTGTAGGGGCGGCTTAAGAGTGCTTTCCTCCCTAGTGC
TTACCTCCCTAGCTGCTTAGGTGGTATAGGGAGAACAAATATAGGGTAGGTCTATTTATTCCTAG
CAGTAACTTCTAATGACTGAATCATATAGGCAAGGTTCTGAAATCCAAGTTAATAGTGTTACTCA
GATTCATAAGGAAGGTAGGCACGGGTGGTAAATATCCTAGTGCTGTACCCACCCACATTCCTTCA
TGGCAGAAACAAGTGGTTAGTAAGAGGCAGCTCAATAACCAAAGGTTAGGTGAAGACAGTAGTAA
GTAAGTATCTAACAGGTGGGTTGGTAGCAGGGACTAAAATGAAAG
Found at i:1065343 original size:18 final size:18
Alignment explanation
Indices: 1065322--1065357 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1065312 ATCTGGCTAT
*
1065322 TACACTTGCTCTGGTGGC
1 TACACTTACTCTGGTGGC
1065340 TACACTTACTCTGGTGGC
1 TACACTTACTCTGGTGGC
1065358 CAGGGGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.28, G:0.25, T:0.33
Consensus pattern (18 bp):
TACACTTACTCTGGTGGC
Left flanking sequence: Indices 1064822 -- 1065321
TGGTAGAAGAAGCCACCAGCAGCCATTTACATTAACATTGACATTGGTGCGAAGAAATACCAGCC
ATTGGTACATTGGTGAAGAAGCCATTGATTAAATTGCCGAAGCAGTCACCCTTCACGGCTTGACA
ACCTTCCCTTCACGGCAGAAATGGCTCAGCTTGTGGACATCCTAAGCTTGGACGAATGGCTCTTA
CTCACTCTTACTCAGTTCTTACTCTTCTGAATATTCTTATTATTCTGAATGGATAGTCTAACCCT
TAACGGCTTGAACGGCTTTTGAACAGCTTGAACGGAATGGCTCAGCTTGGATCAGTCTCCCTATA
GCCTCTCCTCTGCTTACTCTCTCCCTAGGCTGCTTACTCTTAGTCTGCTTACTCTCTCCTAAGCC
TCCCTAAGCTGCTTACTCTCTCCTGCTTGCCTTGGGTGTGTGGGTCTTTCTCTCCTCTTCCGCGT
GCATTAAAGCTCTCTTCTCTGGCTAGTTACTTCTTATCTGGCTAT
Right flanking sequence: Indices 1065358 -- 1065857
CAGGGGCTTAGGAGAGGTGGCCTGACAGGAGGGCTTACTGGGCCTGACAAACTTGCTTACAAACT
TACTCTTTCTGGCTCTGACTCTGGCTCTGACTCTGGGGCTGCTTAAGGGACCTCCCTAGCTGTAG
GGGCGGCTTAAGAGTGCTTTCCTCCCTAGTGCTTACCTCCCTAGCTGCTTAGGTGGTATAGGGAG
AACAAATATAGGGTAGGTCTATTTATTCCTAGCAGTAACTTCTAATGACTGAATCATATAGGCAA
GGTTCTGAAATCCAAGTTAATAGTGTTACTCAGATTCATAAGGAAGGTAGGCACGGGTGGTAAAT
ATCCTAGTGCTGTACCCACCCACATTCCTTCATGGCAGAAACAAGTGGTTAGTAAGAGGCAGCTC
AATAACCAAAGGTTAGGTGAAGACAGTAGTAAGTAAGTATCTAACAGGTGGGTTGGTAGCAGGGA
CTAAAATGAAAGGTCAATAGGGCTCTTTCTAGCCAAGCCAGCAGG
Found at i:1065447 original size:12 final size:12
Alignment explanation
Indices: 1065430--1065458 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
1065420 ACTTACTCTT
1065430 TCTGGCTCTGAC
1 TCTGGCTCTGAC
1065442 TCTGGCTCTGAC
1 TCTGGCTCTGAC
1065454 TCTGG
1 TCTGG
1065459 GGCTGCTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.31, G:0.28, T:0.34
Consensus pattern (12 bp):
TCTGGCTCTGAC
Left flanking sequence: Indices 1064930 -- 1065429
AGTCACCCTTCACGGCTTGACAACCTTCCCTTCACGGCAGAAATGGCTCAGCTTGTGGACATCCT
AAGCTTGGACGAATGGCTCTTACTCACTCTTACTCAGTTCTTACTCTTCTGAATATTCTTATTAT
TCTGAATGGATAGTCTAACCCTTAACGGCTTGAACGGCTTTTGAACAGCTTGAACGGAATGGCTC
AGCTTGGATCAGTCTCCCTATAGCCTCTCCTCTGCTTACTCTCTCCCTAGGCTGCTTACTCTTAG
TCTGCTTACTCTCTCCTAAGCCTCCCTAAGCTGCTTACTCTCTCCTGCTTGCCTTGGGTGTGTGG
GTCTTTCTCTCCTCTTCCGCGTGCATTAAAGCTCTCTTCTCTGGCTAGTTACTTCTTATCTGGCT
ATTACACTTGCTCTGGTGGCTACACTTACTCTGGTGGCCAGGGGCTTAGGAGAGGTGGCCTGACA
GGAGGGCTTACTGGGCCTGACAAACTTGCTTACAAACTTACTCTT
Right flanking sequence: Indices 1065459 -- 1065958
GGCTGCTTAAGGGACCTCCCTAGCTGTAGGGGCGGCTTAAGAGTGCTTTCCTCCCTAGTGCTTAC
CTCCCTAGCTGCTTAGGTGGTATAGGGAGAACAAATATAGGGTAGGTCTATTTATTCCTAGCAGT
AACTTCTAATGACTGAATCATATAGGCAAGGTTCTGAAATCCAAGTTAATAGTGTTACTCAGATT
CATAAGGAAGGTAGGCACGGGTGGTAAATATCCTAGTGCTGTACCCACCCACATTCCTTCATGGC
AGAAACAAGTGGTTAGTAAGAGGCAGCTCAATAACCAAAGGTTAGGTGAAGACAGTAGTAAGTAA
GTATCTAACAGGTGGGTTGGTAGCAGGGACTAAAATGAAAGGTCAATAGGGCTCTTTCTAGCCAA
GCCAGCAGGTGCCTAAATTAGAAATAAATTACTGCTGATGCTCTTAAATCCAAGTCATAATGGTA
TCAAGATCTGTAAGCAGCCAAGTGTGATTCCAGTGAATGGCTGAG
Found at i:1065538 original size:16 final size:15
Alignment explanation
Indices: 1065500--1065538 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
1065490 GCGGCTTAAG
*
1065500 AGTGCTTTCCTCCCT
1 AGTGCTTACCTCCCT
1065515 AGTGCTTACCTCCCT
1 AGTGCTTACCTCCCT
1065530 AGCTGCTTA
1 AG-TGCTTA
1065539 GGTGGTATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.13, C:0.36, G:0.15, T:0.36
Consensus pattern (15 bp):
AGTGCTTACCTCCCT
Left flanking sequence: Indices 1065000 -- 1065499
TGGACGAATGGCTCTTACTCACTCTTACTCAGTTCTTACTCTTCTGAATATTCTTATTATTCTGA
ATGGATAGTCTAACCCTTAACGGCTTGAACGGCTTTTGAACAGCTTGAACGGAATGGCTCAGCTT
GGATCAGTCTCCCTATAGCCTCTCCTCTGCTTACTCTCTCCCTAGGCTGCTTACTCTTAGTCTGC
TTACTCTCTCCTAAGCCTCCCTAAGCTGCTTACTCTCTCCTGCTTGCCTTGGGTGTGTGGGTCTT
TCTCTCCTCTTCCGCGTGCATTAAAGCTCTCTTCTCTGGCTAGTTACTTCTTATCTGGCTATTAC
ACTTGCTCTGGTGGCTACACTTACTCTGGTGGCCAGGGGCTTAGGAGAGGTGGCCTGACAGGAGG
GCTTACTGGGCCTGACAAACTTGCTTACAAACTTACTCTTTCTGGCTCTGACTCTGGCTCTGACT
CTGGGGCTGCTTAAGGGACCTCCCTAGCTGTAGGGGCGGCTTAAG
Right flanking sequence: Indices 1065539 -- 1066038
GGTGGTATAGGGAGAACAAATATAGGGTAGGTCTATTTATTCCTAGCAGTAACTTCTAATGACTG
AATCATATAGGCAAGGTTCTGAAATCCAAGTTAATAGTGTTACTCAGATTCATAAGGAAGGTAGG
CACGGGTGGTAAATATCCTAGTGCTGTACCCACCCACATTCCTTCATGGCAGAAACAAGTGGTTA
GTAAGAGGCAGCTCAATAACCAAAGGTTAGGTGAAGACAGTAGTAAGTAAGTATCTAACAGGTGG
GTTGGTAGCAGGGACTAAAATGAAAGGTCAATAGGGCTCTTTCTAGCCAAGCCAGCAGGTGCCTA
AATTAGAAATAAATTACTGCTGATGCTCTTAAATCCAAGTCATAATGGTATCAAGATCTGTAAGC
AGCCAAGTGTGATTCCAGTGAATGGCTGAGACGTTTAACTTCCATTAAAAAGATGAAAAAAATGA
TATTTCTCAAGGTCATTGCTAATAGAACCCATATACGAGTTCGCA
Found at i:1077395 original size:12 final size:12
Alignment explanation
Indices: 1077354--1077389 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
1077344 GAATGTCGAG
*
1077354 AGATAGATATAT
1 AGATATATATAT
1077366 AGATATATATAT
1 AGATATATATAT
*
1077378 AGATATAGATAT
1 AGATATATATAT
1077390 CTATATTCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (12 bp):
AGATATATATAT
Left flanking sequence: Indices 1076854 -- 1077353
ATTACCTGGTTGGTTCTATTAATTAGAATAATAATAATTCACTGTTATTAACCTGGAGACTACTA
CTTTTTGGTTCATCATGCTCTTTTCTACATTGAAACCAGTAAAAGGTGGGATGCGCGTCCAGGCC
CCAGATAAGTAAGAAGGAAGGAGCAGGTCATGTCTGCCCGCCCCTCCCTTATATATTGCGACCTG
ACCTTCTAGCTCTGCTTTTGAGGGGAAGAAAACACTATTTCCTTCCCTCAATCTAGATCGGGTTC
CTTACTTCTCTATAGCGTGAAGATGGAACCGGAAGAATATGGATATCTATAGCAGATGGATATTA
TTTCTATCCCCTATAGAAAAAAAAGATTCTCTAGAGAGAGAAGGATTTCTATAAGAGAGTTCTGT
TATATATGCAATTATGCTAGCCAGGTGAAGGTACCCCACTTTCCCCTGCTAGGAGGTGAAGTTAA
ATACCTCGTAAGGCACTTGGGGCTTGCTGTAGAGAGAATGTCGAG
Right flanking sequence: Indices 1077390 -- 1077889
CTATATTCGAAGGTTTTACTTCACCGCTTCAGGCACCCTTCGAGAAAGGTGGTTACTCTAGTGTC
TGAAGGGCTTACCTTAGAAGTGAAGTATGGTATTATTATTATTATTATTATTATTTCTTTTTACG
TACGCTTTTACTGTGCTTCCTCTTCTTCTGTATAGGTCGAGCGACGGGCTTCCAAATAGTCTCTC
TCCGGTCGAGCGACTGAAAATTCCCCCCAACTGTACTTCATTTTCGTATCATCTGGGCACTGTGC
CCAAGCAACTTATTCTCCGTATTATTATAATAAGATAAGAGTAGTGGGATAGATAGATTTCTTGT
TGCTAACTCAGGCTTTTAGGTAAACTAGTAGTATCGTGTCATGTAAAGATAAGCCCGCCCTGATG
GCCAATACAGGCAGGCAGGCCAGGGATAGCATAATACAATAGATAAGGACATTATTGGTTTATCT
ATTCTATTCTATAGTAGGGTCTAGCTCATCAGTTCTGTCGCTCAT
Found at i:1077493 original size:3 final size:3
Alignment explanation
Indices: 1077485--1077509 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
1077475 TGAAGTATGG
1077485 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
1077510 TCTTTTTACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Left flanking sequence: Indices 1076985 -- 1077484
CAGATAAGTAAGAAGGAAGGAGCAGGTCATGTCTGCCCGCCCCTCCCTTATATATTGCGACCTGA
CCTTCTAGCTCTGCTTTTGAGGGGAAGAAAACACTATTTCCTTCCCTCAATCTAGATCGGGTTCC
TTACTTCTCTATAGCGTGAAGATGGAACCGGAAGAATATGGATATCTATAGCAGATGGATATTAT
TTCTATCCCCTATAGAAAAAAAAGATTCTCTAGAGAGAGAAGGATTTCTATAAGAGAGTTCTGTT
ATATATGCAATTATGCTAGCCAGGTGAAGGTACCCCACTTTCCCCTGCTAGGAGGTGAAGTTAAA
TACCTCGTAAGGCACTTGGGGCTTGCTGTAGAGAGAATGTCGAGAGATAGATATATAGATATATA
TATAGATATAGATATCTATATTCGAAGGTTTTACTTCACCGCTTCAGGCACCCTTCGAGAAAGGT
GGTTACTCTAGTGTCTGAAGGGCTTACCTTAGAAGTGAAGTATGG
Right flanking sequence: Indices 1077510 -- 1078009
TCTTTTTACGTACGCTTTTACTGTGCTTCCTCTTCTTCTGTATAGGTCGAGCGACGGGCTTCCAA
ATAGTCTCTCTCCGGTCGAGCGACTGAAAATTCCCCCCAACTGTACTTCATTTTCGTATCATCTG
GGCACTGTGCCCAAGCAACTTATTCTCCGTATTATTATAATAAGATAAGAGTAGTGGGATAGATA
GATTTCTTGTTGCTAACTCAGGCTTTTAGGTAAACTAGTAGTATCGTGTCATGTAAAGATAAGCC
CGCCCTGATGGCCAATACAGGCAGGCAGGCCAGGGATAGCATAATACAATAGATAAGGACATTAT
TGGTTTATCTATTCTATTCTATAGTAGGGTCTAGCTCATCAGTTCTGTCGCTCATCAGCAATAAG
GGGACGAAGTCGCTCTAAAGGGAGAGGAAACTGGTTAGCTCATCAGTTAGGGAAAGGAAGTCCGG
GTGGGAAGGAAAACAACGTTTATCCAAAAGAAGCCTGATCTGATG
Found at i:1078562 original size:15 final size:15
Alignment explanation
Indices: 1078542--1078571 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
1078532 GGCAGAAACT
1078542 TTGGATGGTAGTTCA
1 TTGGATGGTAGTTCA
1078557 TTGGATGGTAGTTCA
1 TTGGATGGTAGTTCA
1078572 GTTCAAGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.33, T:0.40
Consensus pattern (15 bp):
TTGGATGGTAGTTCA
Left flanking sequence: Indices 1078042 -- 1078541
CTTTCTCTCTAGTTACATGGTATATACATTATTATAATCTGGGCGTATCCTTTTGATCTTCTCAT
CTCCATGACCAGAGTCTCTATAGCTATTACTCTTTTTCCTTCTCTCTCTCGTTATTATACGTCAT
TAAAAGCCTTATTCTTCGTTCTGCCAGACCCCTTCTTCTTGGGAGTGTTAGACCAGGACCAAGCC
CATCCAACACCTTACTTATAGTCCCCCTTTTGGGGTCCTGAGACAGGTATTTCCATGTCTTACCG
GAGGGTTGGTCCTCATTGGTCTTCCCTTAGTTATGGTACAGTCCCAAAGGACCTGAGTACAACGA
AGTGAAAAGGCATACAGATAAAAGCCTGAGCTCTGCGTAAGTAAGGGATAACCTTGTTCGGTCTG
ACAGCAAACGATATGCAAGCAATCAGATTCGAAAGGGTAAGAGCCATACAGTCAGAACCATACAG
GTCAGGGAGGGCAGGTTGATAGAGATTCAGCGAGGGGCAGAAACT
Right flanking sequence: Indices 1078572 -- 1079071
GTTCAAGTTGTTAACCTGCCTGATGGGTGAAAACAAATAGCTGCTAGACCATCCTTCACCCCCGG
TTAGCATCTTTCTTTCCTCCGGCTATCCAGCCAAACTTACAACCGGCTAGAACTCCCTGCCTCGT
TGGGCTAGAACTCTGTTAGCAGGAAAGAGGAGGTGGACAGGTTAGGCCCTTCAAAGCAGGCCCTT
GATAAACTATTCAACAGTCAACTAGTTCAACAACTTGATCAATTGGAATTTACTTTGTATCTGCC
TTCGCGGGATCATTTACTGTTTCAAGGTCAACTCGATCTACACCCGTATCTGCGCCCGGCAAGGA
CTATGACTCTATAAATGGAAGAGATGCCACTGGCTTTCGAACTGGAAGGAATCCTTAGCAAAGTG
GTGGTAGAGAAGCTAGGACATGAAGGTATACCGCGGGCTTCGCTGCAACCTATGCCTATCCTGCC
TATGTCTTTACTGGTCGCTGTGCTTCCGAAGCTGCTTTTACATTG
Found at i:1079324 original size:15 final size:14
Alignment explanation
Indices: 1079290--1079324 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
1079280 GTACAGTTAG
1079290 GGACGCAACGAGAC
1 GGACGCAACGAGAC
1079304 GAGACGCAACGAGACC
1 G-GACGCAACGAGA-C
1079320 GGACG
1 GGACG
1079325 GGAGTCGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 16 0.84
16 2 0.11
ACGTcount: A:0.34, C:0.29, G:0.37, T:0.00
Consensus pattern (14 bp):
GGACGCAACGAGAC
Left flanking sequence: Indices 1078790 -- 1079289
AGTTCAACAACTTGATCAATTGGAATTTACTTTGTATCTGCCTTCGCGGGATCATTTACTGTTTC
AAGGTCAACTCGATCTACACCCGTATCTGCGCCCGGCAAGGACTATGACTCTATAAATGGAAGAG
ATGCCACTGGCTTTCGAACTGGAAGGAATCCTTAGCAAAGTGGTGGTAGAGAAGCTAGGACATGA
AGGTATACCGCGGGCTTCGCTGCAACCTATGCCTATCCTGCCTATGTCTTTACTGGTCGCTGTGC
TTCCGAAGCTGCTTTTACATTGTGCTTGCTCTCAACTTCAATGCCTGAGCTTGCTCTGCTCTCTC
CTCCACCGACTTCCTGGGGTCTGGTGCCGCTGTTCCTCTATGGGGGTCTGGGGGTAGGGGTTGAT
CGATTGCCCCAGGAAGAGGTACTACCACTATTGCTTCATCCATCCTCCAAAGAATGAACAAACAG
GGCATTCTCCGTTGACCTGGTGGAAGAAAGAGCGTGTACAGTTAG
Right flanking sequence: Indices 1079325 -- 1079824
GGAGTCGATAGAAAAAGGGCAATGGCTTTGGAACCTTCCCATTATGAACTCCGGAAGCCAAACAA
CGCCAGTAAGCTATTTGACGACAGCCATCCAAGAGAAATAAGTGAAATCCGTTACACACCAACCC
CTTCCCTGGGTGGGCAGCAGATCATTAGAAAGAGCCGGGCCGATCGAGACACATTAGGAGGGGAA
TAAAGCATAGCGCTATGGGAATGACCGTCCCTAAATAACCGTTTCGATGATGGCAATACCGTGCG
TGTCCAAATAACCGGTTCTGAATGCCGTTGGGAATCCGTGTCCAAATAACTGGAAATGATAACTG
TTTTATCATGCTGATGCTGCTTGGCCCTCTCTCTTACTCCTTCTCTCTCTTCTCTATAAACAGCC
CGGATGCTGAGAGCGTTCACTCCCTAATATGAAAGCGTTTACTACCTGGCCTGTATTCTCTCTCT
ACGGCCAGCACTTAAGAGACATGGCTGGATGGTATGGTAAAACTT
Found at i:1080284 original size:15 final size:15
Alignment explanation
Indices: 1080264--1080302 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
1080254 AGGATTGATA
*
1080264 AGGACCTTACTGGGC
1 AGGACCTTACGGGGC
*
1080279 AGGACCTTTCCGGGGC
1 AGGACC-TTACGGGGC
1080295 AGGACCTT
1 AGGACCTT
1080303 CTTTTCAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (15 bp):
AGGACCTTACGGGGC
Left flanking sequence: Indices 1079764 -- 1080263
CCTGTATTCTCTCTCTACGGCCAGCACTTAAGAGACATGGCTGGATGGTATGGTAAAACTTGGAT
TTAATAGGGCTTTTCATAGCTTCCCTTGCTCCCTATGATTGCTTGATGGTCAGCCGAGAGGAGCG
AGTTCCCTTTAGCAGAAATAAATCGTGTGGAACTGCCGGATGATTAATTCTCAACAGCCAGAACT
TTAGAGACATGATGGCTAGATGATGGGACATCGGAGAGCCTTGTTTTAGACGGGCTTCAGACTAG
CTAGGGGATGCCATGATTGCTAGGAGATGTTCACACCTTGCCTTTAGTAATCTTAGTTAGGAGGG
ACTGCTATTAACCTTCTTATCAGGATCAGGACCGGGCGGGATCACATAACCTTACCTCTTCCGTG
TTTCCTAACTACCTGCCCACCTTTAGAGCTAGACCTTTTAGTCCCTCCCTTTATGAGGTTGGCTT
GCGAGACTATACTTAGGGGTGTGCCAGGAATTAAGAGGATTGATA
Right flanking sequence: Indices 1080303 -- 1080802
CTTTTCAGGACCTTACCTGAGCAGAGCTCGAGGAATCAATAAATAATAAGGGGATAACCTTGTTC
GAGCCGGCCGAAGAAAAGGTGTACTTCCTGAAAGAAGGACGAATGACTCCGCACTCTAACAGGTC
CTTCCTGCAAAGGAGTAGTGATAGGCGGGTGAATGACTGTGTTGCCTCCTTCTCGTTGGCAAGCC
CCACACATTTGCTGGACCCACACAGCGAGCGATAAGTGACATTCCCTATTGATTGGAAAGAATAG
ATCAATTGGTTCCCGAAGTGAGCTTTCGATCGATTAGTTACCGACCACTAGTACGACAGATCGAG
AAGACAACAATGTGCAAGGGCTGTGCACTCAGCAAGCATGCCAAGACTACTTTCCCTAGCAGTGA
GCATAGATCAAGAGGTCTTCTTTATATGATCCTATTTGACTTTGGAAATAGCCTAATGAAATGAA
AATGGGCTTGCTCTGCTACTGGATCTATCGCTGTTACTGCTGCCC
Found at i:1082395 original size:13 final size:13
Alignment explanation
Indices: 1082377--1082433 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
1082367 GCTATGGATT
1082377 CTGACCTAACGAC
1 CTGACCTAACGAC
*
1082390 CTGACCTAAC--T
1 CTGACCTAACGAC
*
1082401 CTGACCTTACGAC
1 CTGACCTAACGAC
* *
1082414 CTTACCTAGCGAC
1 CTGACCTAACGAC
1082427 CTGACCT
1 CTGACCT
1082434 TCTGACTTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
11 9 0.26
13 26 0.74
ACGTcount: A:0.25, C:0.39, G:0.14, T:0.23
Consensus pattern (13 bp):
CTGACCTAACGAC
Left flanking sequence: Indices 1081877 -- 1082376
AACTGGGCAATCAACTGATCTGTTTCCTCAACTCCCTTCCCGGCCCTTCTTTCCTGTTCAGCGAA
ATGCGCTTAGGTAAACCGTATATCGCTGTCAGGTGAATAGGCGAAGGATTCAATATCCCTTTTAG
AATTCCATCTTGAAGGGTTCCTTGCTTGCCCGTTTCCACACATAGAAGAGATAGACTTTCGGGTG
GAAGGTAAAATAGCAAGACACTCACACTCACACATGGATATCTTCTCTGTTGCCTTCCTCCCCTT
TCTTCGGCAGGGGAGCCATCCTTCCTCCCCCTCCTAATTCAGGGGAGCCCTCCTTCCTTATGACT
AGCAGGAAGGATATTTTCTATTGACAGAAAAGAATAAGCTGTACTTCCATTCGTATCTTTCCTCG
CTCTACTGCTGACATTTGCTGCTATGGATATTAGTGGGATACTTGCTACTGCTGACATTTGCTGC
TACTGAAAGGAAAGTATTTGCTACTGAAAGTATTTGCTATGGATT
Right flanking sequence: Indices 1082434 -- 1082933
TCTGACTTCAATAACTCTGACCTTACGACCTTACCTATTATATATGTGCATACCAGAACACTCAC
ACCTCTAAGGCAGCTCTACATACGTGGCATTCTTTACCTTGCCTTCTGACTTGTCCTTTCCTTTG
CCTCCCCACCCTTCCCATCGGGTTATCGGCTGGTCCTACCTTTCGGGTGAAAGGCTGGTCCTACC
TAGCTTATTGGTCCTACCTTCCCAGCAAAAATACATTATTATTGGTAGACGGGAGAATGGCGAAG
GATAGAGTTCGAGAACAAGCCAAAGGATAGAGTTCGCTGGTCCTACCTTGCTTACTGGTCTTACC
TTACTTAATGGACTAACGGGAGGGAGGAGGTTGGCCAAGGAAAGCGAACGGAAAAGCACTGAAGC
GGGGTAGAGTAATGGTAAACTATCAAGGCCCAGGATCCTGCCTATTGATCAGTCTTTAGGCGGCC
CCTATTATGAACCATTATTGGGCTTTCAAAAGCATTAGCTAGTGA
Found at i:1082753 original size:18 final size:18
Alignment explanation
Indices: 1082730--1082765 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1082720 ATAGAGTTCG
*
1082730 CTGGTCCTACCTTGCTTA
1 CTGGTCCTACCTTACTTA
*
1082748 CTGGTCTTACCTTACTTA
1 CTGGTCCTACCTTACTTA
1082766 ATGGACTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.31, G:0.14, T:0.42
Consensus pattern (18 bp):
CTGGTCCTACCTTACTTA
Left flanking sequence: Indices 1082230 -- 1082729
AAAGAATAAGCTGTACTTCCATTCGTATCTTTCCTCGCTCTACTGCTGACATTTGCTGCTATGGA
TATTAGTGGGATACTTGCTACTGCTGACATTTGCTGCTACTGAAAGGAAAGTATTTGCTACTGAA
AGTATTTGCTATGGATTCTGACCTAACGACCTGACCTAACTCTGACCTTACGACCTTACCTAGCG
ACCTGACCTTCTGACTTCAATAACTCTGACCTTACGACCTTACCTATTATATATGTGCATACCAG
AACACTCACACCTCTAAGGCAGCTCTACATACGTGGCATTCTTTACCTTGCCTTCTGACTTGTCC
TTTCCTTTGCCTCCCCACCCTTCCCATCGGGTTATCGGCTGGTCCTACCTTTCGGGTGAAAGGCT
GGTCCTACCTAGCTTATTGGTCCTACCTTCCCAGCAAAAATACATTATTATTGGTAGACGGGAGA
ATGGCGAAGGATAGAGTTCGAGAACAAGCCAAAGGATAGAGTTCG
Right flanking sequence: Indices 1082766 -- 1083265
ATGGACTAACGGGAGGGAGGAGGTTGGCCAAGGAAAGCGAACGGAAAAGCACTGAAGCGGGGTAG
AGTAATGGTAAACTATCAAGGCCCAGGATCCTGCCTATTGATCAGTCTTTAGGCGGCCCCTATTA
TGAACCATTATTGGGCTTTCAAAAGCATTAGCTAGTGACTTCATGTCATGACTTCTTTCGAAACT
CAGCAAACTGAAACAACGAACTAAGTCTATATGTCTGAACTAGGAGGGATCACATTGGTGGGAGG
GATCAATAGGATAGCGACTGATCTCGCCGTATCTACCATCTTTATTATGATATTATATCTTGTAA
GTACCGTCCTAGCCTAATGCCTCTAACCCTTAGGGAGGCTTACCCTTATCCCTTCGTTGCTGCTC
CCATCGGAGTTTCTTATCCGACTTACAAAGAATCCTGGCATTGAGTGCATCACCAACTCTTGGAT
CGACTACCGGTATTGACACCTCCCTCCCTGTGTCAACAAACTGGG
Found at i:1100193 original size:21 final size:21
Alignment explanation
Indices: 1100167--1100219 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
1100157 CGGTAAGGCC
*
1100167 GGCGCAGGACCAAATAAATAA
1 GGCGCAGGACCAAACAAATAA
1100188 GGCGCAGGACCAAACAAATAA
1 GGCGCAGGACCAAACAAATAA
1100209 GGCGCAGGACC
1 GGCGCAGGACC
1100220 TTACCTTACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.42, C:0.25, G:0.28, T:0.06
Consensus pattern (21 bp):
GGCGCAGGACCAAACAAATAA
Left flanking sequence: Indices 1099667 -- 1100166
CCTGCATCCACCGGGAACATTTTTTCCCTTGAGCGTAAAACTGGGGATTGCAAAGCGTTTCCACA
TGATAGGGGAGAACTGGGATTAGATCTTGGAAATAATCGACTCAAATAGATACTCATCATAAGCT
AGCTTCTTTCTTGCTCCTTCCCCCCTCCCTATTGATTGATTGATTGATCATAAGAAGCATCTTCG
GGCAGCCAGCCATTGTATTTAGATAGGTAGGGAAAACCAATTGGTTGGATTTCTTTCCGAATGAA
TCGATCGAGAAAGCTCGAAAGAGCATGGGGGAGCTCAGGAGGGATCGGATGTTATCAGTTTAAAG
TGCTCGCTGATTTATATTCACGATGATGCTCCTCGAAATGAATGATTGGTATTCAAAAGCATGGG
GGATGGATGAAAGAGCATGTTGCTGGCTGGCATAAGCAATAAATAAGTGCCTTTCATTCATAAGC
AATAAGTGCCCGCCTTTCAATAGACCGAACCCGCCCGGTAAGGCC
Right flanking sequence: Indices 1100220 -- 1100719
TTACCTTACTTATAAGGGGTTGACCAGGACCAACTCTTCGAGCTCAGGTAAGACCCAGTCAGGCC
CCTATATTTCTTCCCCTCAATGATAAACCCTCTCATTTCTTCCCCTCAAAGACTGAGCTGAGCTA
TAAGGGGATAACCCAGCTCAGGGTTGTGAGACCGACCCTTACCGGACCTGACCGGACCTGACTGA
GCTGAGCGAGAAGGGGATAAGTCGAGCGTTTGTGATCACCCCTTCCTTATTTCCTTGCCCCCTCA
AAGACTGAGCGGAGGGAGTGTATTATCTACGTTATTTAATGCTTCCGGCCCCCTGCCTGTTGCCC
CACCTTCCACCCACCCCAGGTAAGTCTTTAACGTAACGTAAATAAATAAAGTCAAGTAAGGAAAT
AAAGTAAAGTAAGGGGCATATAAAGTAACGCCCCGGTCTTTTCTTACCAAGCAGAGCTCTGCGAA
GCCAGTCAGGTGTTCAGGCAAGATCAGGATCTGAAAGAAATAAGT
Found at i:1100603 original size:18 final size:18
Alignment explanation
Indices: 1100577--1100621 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
1100567 AGTCTTTAAC
* *
1100577 GTAACGTAAATAAATAAA
1 GTAAAGTAAAGAAATAAA
* *
1100595 GTCAAGTAAGGAAATAAA
1 GTAAAGTAAAGAAATAAA
1100613 GTAAAGTAA
1 GTAAAGTAA
1100622 GGGGCATATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.18, T:0.20
Consensus pattern (18 bp):
GTAAAGTAAAGAAATAAA
Left flanking sequence: Indices 1100077 -- 1100576
TGCTGGCTGGCATAAGCAATAAATAAGTGCCTTTCATTCATAAGCAATAAGTGCCCGCCTTTCAA
TAGACCGAACCCGCCCGGTAAGGCCGGCGCAGGACCAAATAAATAAGGCGCAGGACCAAACAAAT
AAGGCGCAGGACCTTACCTTACTTATAAGGGGTTGACCAGGACCAACTCTTCGAGCTCAGGTAAG
ACCCAGTCAGGCCCCTATATTTCTTCCCCTCAATGATAAACCCTCTCATTTCTTCCCCTCAAAGA
CTGAGCTGAGCTATAAGGGGATAACCCAGCTCAGGGTTGTGAGACCGACCCTTACCGGACCTGAC
CGGACCTGACTGAGCTGAGCGAGAAGGGGATAAGTCGAGCGTTTGTGATCACCCCTTCCTTATTT
CCTTGCCCCCTCAAAGACTGAGCGGAGGGAGTGTATTATCTACGTTATTTAATGCTTCCGGCCCC
CTGCCTGTTGCCCCACCTTCCACCCACCCCAGGTAAGTCTTTAAC
Right flanking sequence: Indices 1100622 -- 1101121
GGGGCATATAAAGTAACGCCCCGGTCTTTTCTTACCAAGCAGAGCTCTGCGAAGCCAGTCAGGTG
TTCAGGCAAGATCAGGATCTGAAAGAAATAAGTCTTACCAAGCTCTGCGAAGCCCCAGCTCCGTC
AGGTCAGGTAAGGCCGTAACAAACCAATCTCCAGCTCCGCTCAGCATACATGCCAACTGGGTAAC
TCCGCGATAACGGAGTTCCAACACCAACCAGCTCCGAGCAATCACCAGCTCCGAGGTGAGGAATC
AAGCTCAGTCTTTGAGGGGCAGAAATATAGGACCTACCAACTTGAGATAAAGGATTTACAAACCT
ACTTATTTTGCAGGCAGACAGGGTAAGACCGTCCCTTGCCAAACTGACTGAAAAGAGACAAGTCT
TTCATTTCAGTAGCCTCTGAGCTGTACTTATCTATTCTATAAATAAATACGGGTCGAAAGCAGAG
ATCTATAAAGAAATACGGAAAGCACACTTAAAGCCTAGCTTTCCT
Found at i:1100622 original size:18 final size:18
Alignment explanation
Indices: 1100588--1100623 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1100578 TAACGTAAAT
*
1100588 AAATAAAGTCAAGTAAGG
1 AAATAAAGTAAAGTAAGG
1100606 AAATAAAGTAAAGTAAGG
1 AAATAAAGTAAAGTAAGG
1100624 GGCATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.03, G:0.22, T:0.17
Consensus pattern (18 bp):
AAATAAAGTAAAGTAAGG
Left flanking sequence: Indices 1100088 -- 1100587
ATAAGCAATAAATAAGTGCCTTTCATTCATAAGCAATAAGTGCCCGCCTTTCAATAGACCGAACC
CGCCCGGTAAGGCCGGCGCAGGACCAAATAAATAAGGCGCAGGACCAAACAAATAAGGCGCAGGA
CCTTACCTTACTTATAAGGGGTTGACCAGGACCAACTCTTCGAGCTCAGGTAAGACCCAGTCAGG
CCCCTATATTTCTTCCCCTCAATGATAAACCCTCTCATTTCTTCCCCTCAAAGACTGAGCTGAGC
TATAAGGGGATAACCCAGCTCAGGGTTGTGAGACCGACCCTTACCGGACCTGACCGGACCTGACT
GAGCTGAGCGAGAAGGGGATAAGTCGAGCGTTTGTGATCACCCCTTCCTTATTTCCTTGCCCCCT
CAAAGACTGAGCGGAGGGAGTGTATTATCTACGTTATTTAATGCTTCCGGCCCCCTGCCTGTTGC
CCCACCTTCCACCCACCCCAGGTAAGTCTTTAACGTAACGTAAAT
Right flanking sequence: Indices 1100624 -- 1101123
GGCATATAAAGTAACGCCCCGGTCTTTTCTTACCAAGCAGAGCTCTGCGAAGCCAGTCAGGTGTT
CAGGCAAGATCAGGATCTGAAAGAAATAAGTCTTACCAAGCTCTGCGAAGCCCCAGCTCCGTCAG
GTCAGGTAAGGCCGTAACAAACCAATCTCCAGCTCCGCTCAGCATACATGCCAACTGGGTAACTC
CGCGATAACGGAGTTCCAACACCAACCAGCTCCGAGCAATCACCAGCTCCGAGGTGAGGAATCAA
GCTCAGTCTTTGAGGGGCAGAAATATAGGACCTACCAACTTGAGATAAAGGATTTACAAACCTAC
TTATTTTGCAGGCAGACAGGGTAAGACCGTCCCTTGCCAAACTGACTGAAAAGAGACAAGTCTTT
CATTTCAGTAGCCTCTGAGCTGTACTTATCTATTCTATAAATAAATACGGGTCGAAAGCAGAGAT
CTATAAAGAAATACGGAAAGCACACTTAAAGCCTAGCTTTCCTAG
Found at i:1101943 original size:24 final size:24
Alignment explanation
Indices: 1101912--1101999 Score: 115
Period size: 24 Copynumber: 3.7 Consensus size: 24
1101902 CATTAGATGC
1101912 ACAGGGATAACCCGGTAACTAGAG
1 ACAGGGATAACCCGGTAACTAGAG
* * *
1101936 ACAAGGATAAACAC-GTAAATAGAG
1 ACAGGGAT-AACCCGGTAACTAGAG
*
1101960 ACAGGGATAACCCAGTAACTAGAG
1 ACAGGGATAACCCGGTAACTAGAG
*
1101984 ACAGGGATAAACCGGT
1 ACAGGGATAACCCGGT
1102000 GAAGTTGGAG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
23 4 0.07
24 46 0.85
25 4 0.07
ACGTcount: A:0.43, C:0.18, G:0.26, T:0.12
Consensus pattern (24 bp):
ACAGGGATAACCCGGTAACTAGAG
Left flanking sequence: Indices 1101412 -- 1101911
AGATCCCCGGAGTAAAGAATAGAGGGAGGAAGTTAGTCATTTCCTATTTTGCGTAAGGGGAGGAG
CGTTAAGCGTCTCGCCCGACCATAGAGAGGGCGAGGAGCAACGTAAATAAATCATCATTTCATTA
GACAGGCTAGGCGTAACGAACGTATTGAAAGCTAGGCGTAACGTATCTACTATTTGATGTAATCA
AGGCTTGGTTCTCCAGCGTTCATTGGTTCGAGAACCGATCCTTCCGAAGAATTACCTAGAAGACC
TTCCTTCGCTATATATCTTCCCGAACTCGAAGGATCACTCTTTCCGTTCCCTTATTCGTTCCTTC
TGAACTTACTCTCTAGTGAAAGACTTCGTGTCAAGTAATGAAGCAAGCATAATTACAGATATAAT
GAGATATATCTTTGTATACGATATTATTCATTCTCACCTGAATGAGTGAAACAGGCAGGGGCATG
AATCTACTTGTTTTATTACGTATTCCAGGTAATCTCATTAGATGC
Right flanking sequence: Indices 1102000 -- 1102499
GAAGTTGGAGTTATTCGTCGGAGTTTAATTCTCTGTATATATAAAGAAGGGTCGGGTCCATAGCA
TCAGTGTCGGGCAGGCAGAGAGCGCTTGGAAGGAAAGGCAGTATTATTTAGTAAGTAAGAGCGCA
TGGGCGTTTCACTCTTTCTTACTTAAGAGGCAGGTCCAACAGCGCTTATAGGGAAAGCGGTACTT
TGTTTTGGTTGGATCCAAACTATCTGTTGCTTGGGTCTGATCACCTCTGATTGGCTCGGCCCGAC
CTTACCCTTGCTTGGGTATGGTCCCGTATCTCCACATTACCTTTACCTGGTTTTGCTTGGTTCAC
CCATTTCCGAACTCCTTTCTTGTTGACTGGCCGTTGCTGGGTCCCGTCGGCTACAAATATATAAG
GCTGCTGTGTGCGCATATGCTCCTTGCGGCTTGGTCCCTACATTTGATTCTGAGGTTTAGTTGGG
ATTGAAAAGCAAGGTTATAGAGAAGGCGGCCATATATTGCGTATT
Found at i:1103835 original size:11 final size:11
Alignment explanation
Indices: 1103819--1103846 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1103809 CTTTTTCCCA
1103819 CATTCTAAAGG
1 CATTCTAAAGG
1103830 CATTCTAAAGG
1 CATTCTAAAGG
1103841 CATTCT
1 CATTCT
1103847 CTTTCAAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (11 bp):
CATTCTAAAGG
Left flanking sequence: Indices 1103319 -- 1103818
AACGAACCGCGCTTGTTGGCGGTGTTTTGCAAAATAAAGGGATGAAAGGAGCCGCCAAGCCTGAA
ACAAAGGGAGACGGGGTGTTTTATGCTGGAATGAGGAGTGGGGCATTCCACCAGCAAACTATACG
TAATAAGGCATCTTCGCGGCGGCAAAGGTAACTCAGGCCCACTCAGGGGATCTTTACTGACATCA
TGGCCGTGTGCCGTGCAGTTCAGAAGATTTTAATCGTAGCCATTCCGTCAGGGGATCTTTCCTCA
GGGGCGCAGTTCTACCCGGTCACCACATAGACGTTCCAAGGAACAAGGAAGGAGATTCACTCACT
TGGGTAACTAATTTCATCAGCGAGCCATACAGCCAAAGGCACATCAGCTCAGCCAGGGAAAGGAA
CACAACCTTACTTGATATAACCAATGCCTCTCTATTCATTAGTCTTTAGCCCCGGTAACCACATT
ATTAACACTACAAGCAATCATCTAAACGCATGTTTCTTTTTCCCA
Right flanking sequence: Indices 1103847 -- 1104346
CTTTCAAGGCATGTTTCTTTCTTTTTCTTTACTATGATATTGACACACCCTTGATAGACTTTATT
CCCCTGTGGGACGTAGTTCCCTTGCCTAATGAACCCTTATTCCTCATGAACCCTTGTTTGAAAGC
TCATGAAGAGGCCAATTTGTTAAGCAACTACGATCTATAGTGCTTTTTATATTGTTACATTACTT
TATTGTTACATCCCTTTATAAGGTAGAGAATCCTGGGGAGAGGCAGAGATTACTGATTCAAGAAG
GTAACTTTCCTAATCGTAGCTATAAGGTTACATCAATCCCAGCTATTCCCAGATATAAAAAGAAA
GGATTATGATTCTTTCTACCCGGTCAGCACATTAACACTGCCTCATCAACCCTTATTCCTAACCA
AATGAAACCCTTATTCCTAAGCAAATGGACTCGGTCATGGAAGCAAGCATATTCTTTAAGCTTGG
AAGCCAGGAAAGCACAGGTAAGGCGATTTGATTTAAAAGGTCAGG
Found at i:1104058 original size:16 final size:16
Alignment explanation
Indices: 1104026--1104060 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1104016 GTGCTTTTTA
*
1104026 TATTGTTACATTACTT
1 TATTGTTACATCACTT
*
1104042 TATTGTTACATCCCTT
1 TATTGTTACATCACTT
1104058 TAT
1 TAT
1104061 AAGGTAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (16 bp):
TATTGTTACATCACTT
Left flanking sequence: Indices 1103526 -- 1104025
GTGCAGTTCAGAAGATTTTAATCGTAGCCATTCCGTCAGGGGATCTTTCCTCAGGGGCGCAGTTC
TACCCGGTCACCACATAGACGTTCCAAGGAACAAGGAAGGAGATTCACTCACTTGGGTAACTAAT
TTCATCAGCGAGCCATACAGCCAAAGGCACATCAGCTCAGCCAGGGAAAGGAACACAACCTTACT
TGATATAACCAATGCCTCTCTATTCATTAGTCTTTAGCCCCGGTAACCACATTATTAACACTACA
AGCAATCATCTAAACGCATGTTTCTTTTTCCCACATTCTAAAGGCATTCTAAAGGCATTCTCTTT
CAAGGCATGTTTCTTTCTTTTTCTTTACTATGATATTGACACACCCTTGATAGACTTTATTCCCC
TGTGGGACGTAGTTCCCTTGCCTAATGAACCCTTATTCCTCATGAACCCTTGTTTGAAAGCTCAT
GAAGAGGCCAATTTGTTAAGCAACTACGATCTATAGTGCTTTTTA
Right flanking sequence: Indices 1104061 -- 1104560
AAGGTAGAGAATCCTGGGGAGAGGCAGAGATTACTGATTCAAGAAGGTAACTTTCCTAATCGTAG
CTATAAGGTTACATCAATCCCAGCTATTCCCAGATATAAAAAGAAAGGATTATGATTCTTTCTAC
CCGGTCAGCACATTAACACTGCCTCATCAACCCTTATTCCTAACCAAATGAAACCCTTATTCCTA
AGCAAATGGACTCGGTCATGGAAGCAAGCATATTCTTTAAGCTTGGAAGCCAGGAAAGCACAGGT
AAGGCGATTTGATTTAAAAGGTCAGGGGAAAAGGCACAACAAACGGGGGTTGTTCTAGTCACGAA
CCAGTGGGAACAGTGGGTTCTTCTAGTCGGGGTAGGAAGCTACGATGGAAGCCAGCAAAGGAGAG
TGCTAGGTGGACGGACTCATTAACCTGTGCGCAGGAAGCATATGAACGAACTAGAGACTTTACCA
CTGCCTCATGAACCGTTGTGTTAAAGCTAAGGTGGACGGCATCCC
Found at i:1104249 original size:23 final size:23
Alignment explanation
Indices: 1104219--1104263 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
1104209 CTGCCTCATC
1104219 AACCCTTATTCCTAACCAAATGA
1 AACCCTTATTCCTAACCAAATGA
*
1104242 AACCCTTATTCCTAAGCAAATG
1 AACCCTTATTCCTAACCAAATG
1104264 GACTCGGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.29, G:0.07, T:0.27
Consensus pattern (23 bp):
AACCCTTATTCCTAACCAAATGA
Left flanking sequence: Indices 1103719 -- 1104218
CTTGATATAACCAATGCCTCTCTATTCATTAGTCTTTAGCCCCGGTAACCACATTATTAACACTA
CAAGCAATCATCTAAACGCATGTTTCTTTTTCCCACATTCTAAAGGCATTCTAAAGGCATTCTCT
TTCAAGGCATGTTTCTTTCTTTTTCTTTACTATGATATTGACACACCCTTGATAGACTTTATTCC
CCTGTGGGACGTAGTTCCCTTGCCTAATGAACCCTTATTCCTCATGAACCCTTGTTTGAAAGCTC
ATGAAGAGGCCAATTTGTTAAGCAACTACGATCTATAGTGCTTTTTATATTGTTACATTACTTTA
TTGTTACATCCCTTTATAAGGTAGAGAATCCTGGGGAGAGGCAGAGATTACTGATTCAAGAAGGT
AACTTTCCTAATCGTAGCTATAAGGTTACATCAATCCCAGCTATTCCCAGATATAAAAAGAAAGG
ATTATGATTCTTTCTACCCGGTCAGCACATTAACACTGCCTCATC
Right flanking sequence: Indices 1104264 -- 1104763
GACTCGGTCATGGAAGCAAGCATATTCTTTAAGCTTGGAAGCCAGGAAAGCACAGGTAAGGCGAT
TTGATTTAAAAGGTCAGGGGAAAAGGCACAACAAACGGGGGTTGTTCTAGTCACGAACCAGTGGG
AACAGTGGGTTCTTCTAGTCGGGGTAGGAAGCTACGATGGAAGCCAGCAAAGGAGAGTGCTAGGT
GGACGGACTCATTAACCTGTGCGCAGGAAGCATATGAACGAACTAGAGACTTTACCACTGCCTCA
TGAACCGTTGTGTTAAAGCTAAGGTGGACGGCATCCCACTGGTGGACGGACTCATAACCCACTGG
TGCACCGTGGGGAGCCAGAGGTTGTTCTAGCCAACCGTGGGAGGGACATGCTTAGTGGGACATGC
TTAGTTATAGCCAGCGATGCTTAGTGGAACATGGGTTGTTCTAGTCAGTGGACAGGTGGTCATCG
GGAAGAAAACAGATGGATAAATCCTATCTATTCTGTGGACAGGTG
Found at i:1104650 original size:14 final size:14
Alignment explanation
Indices: 1104631--1104658 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1104621 AACCGTGGGA
1104631 GGGACATGCTTAGT
1 GGGACATGCTTAGT
1104645 GGGACATGCTTAGT
1 GGGACATGCTTAGT
1104659 TATAGCCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (14 bp):
GGGACATGCTTAGT
Left flanking sequence: Indices 1104131 -- 1104630
AGGTTACATCAATCCCAGCTATTCCCAGATATAAAAAGAAAGGATTATGATTCTTTCTACCCGGT
CAGCACATTAACACTGCCTCATCAACCCTTATTCCTAACCAAATGAAACCCTTATTCCTAAGCAA
ATGGACTCGGTCATGGAAGCAAGCATATTCTTTAAGCTTGGAAGCCAGGAAAGCACAGGTAAGGC
GATTTGATTTAAAAGGTCAGGGGAAAAGGCACAACAAACGGGGGTTGTTCTAGTCACGAACCAGT
GGGAACAGTGGGTTCTTCTAGTCGGGGTAGGAAGCTACGATGGAAGCCAGCAAAGGAGAGTGCTA
GGTGGACGGACTCATTAACCTGTGCGCAGGAAGCATATGAACGAACTAGAGACTTTACCACTGCC
TCATGAACCGTTGTGTTAAAGCTAAGGTGGACGGCATCCCACTGGTGGACGGACTCATAACCCAC
TGGTGCACCGTGGGGAGCCAGAGGTTGTTCTAGCCAACCGTGGGA
Right flanking sequence: Indices 1104659 -- 1105158
TATAGCCAGCGATGCTTAGTGGAACATGGGTTGTTCTAGTCAGTGGACAGGTGGTCATCGGGAAG
AAAACAGATGGATAAATCCTATCTATTCTGTGGACAGGTGGGCCCTTATTGCACTTCGGGAAGAG
ATCTCAGGGTGGGGTTAACAGGAAGGAGATGAACGAACTAGAGACTTTAACACTGCCTCATCAAC
CGATATTCCTAGCGTGCCTCATCAAACCTTATTACTCATAAACCCTTTTCTTTAAAGCACTGTTA
CCACGGGCATAAGCTTACCAATGACATAAGGTCACTTTTATAATCCTAGCTATAAGGTAAGGGCA
TTCCACTGGGATAGAAGGTCACTTACTCATCGGAGCTATTCCCAGCTATAAGGTAAAGGTCACTG
TGCTCAACCAATCTCACGTGTTACTGGAAGGAACGATATTCTTTATTCACACTGCCTCACCTTGT
CGCAAAGCTCTTCAACCCTCATCAACCCTTGGCGCAACCCTCATC
Found at i:1105269 original size:18 final size:18
Alignment explanation
Indices: 1105246--1105281 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1105236 GAATAGCTAT
1105246 AAGGTCACTGTACTCATC
1 AAGGTCACTGTACTCATC
1105264 AAGGTCACTGTACTCATC
1 AAGGTCACTGTACTCATC
1105282 GTAGCTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
AAGGTCACTGTACTCATC
Left flanking sequence: Indices 1104746 -- 1105245
CTATTCTGTGGACAGGTGGGCCCTTATTGCACTTCGGGAAGAGATCTCAGGGTGGGGTTAACAGG
AAGGAGATGAACGAACTAGAGACTTTAACACTGCCTCATCAACCGATATTCCTAGCGTGCCTCAT
CAAACCTTATTACTCATAAACCCTTTTCTTTAAAGCACTGTTACCACGGGCATAAGCTTACCAAT
GACATAAGGTCACTTTTATAATCCTAGCTATAAGGTAAGGGCATTCCACTGGGATAGAAGGTCAC
TTACTCATCGGAGCTATTCCCAGCTATAAGGTAAAGGTCACTGTGCTCAACCAATCTCACGTGTT
ACTGGAAGGAACGATATTCTTTATTCACACTGCCTCACCTTGTCGCAAAGCTCTTCAACCCTCAT
CAACCCTTGGCGCAACCCTCATCAACCAGTAGTCGCGTCTTTTAGGGGTTCAGTCCTTCCTCAAG
CGCTTACATAAGTAGTGACACAAGCTTCACCATATGAATAGCTAT
Right flanking sequence: Indices 1105282 -- 1105781
GTAGCTATCTCAACTAATGAACCCAATTACAATGGCATGGCAATGAACCCAATTACAAAGAGAAA
GAAGTTGCTATCATGATATATTAGATGTTGCTACCATGAGAGGTTTAACTTGCTTGACCGAAGGG
AGGGCAAGGAGAGATAACTGGGAGAAAGAAGTTGCTATAATGAGATATTAGAAGGAGCTACCACA
CTATGAACCAGTAGTGGCGTGGGCTAGTTGACGTAGTTAACTTGCCTCATTAACCTGGAGTGTTA
CCTTGCACTCATGAACCTGTAGTGCGCGTGGGCAGAGCAACAGGCACTAGAGATAACCTTGTCTT
ATGCTTGCATAACGAAGCTTGCATAGGCTTGTCCTAGATAAGCTTTATTAAGCTTCATTTACGAT
TACTTGATCAATGAAAGGGATTACTTCATTTACAGCAACCGAATCTACTATCGCTAGCTTGTAAC
TCACCTACTGCCTCATATCGATAGCTATCACACCAAGCAATAGCA
Found at i:1105558 original size:27 final size:26
Alignment explanation
Indices: 1105512--1105565 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
1105502 AGTTGACGTA
*
1105512 GTTAACTTGCCTCATTAACCTGGAGT
1 GTTAACTTGCCTCATGAACCTGGAGT
* *
1105538 GTTACCTTGCACTCATGAACCTGTAGT
1 GTTAACTTGC-CTCATGAACCTGGAGT
1105565 G
1 G
1105566 CGCGTGGGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GTTAACTTGCCTCATGAACCTGGAGT
Left flanking sequence: Indices 1105012 -- 1105511
ATCGGAGCTATTCCCAGCTATAAGGTAAAGGTCACTGTGCTCAACCAATCTCACGTGTTACTGGA
AGGAACGATATTCTTTATTCACACTGCCTCACCTTGTCGCAAAGCTCTTCAACCCTCATCAACCC
TTGGCGCAACCCTCATCAACCAGTAGTCGCGTCTTTTAGGGGTTCAGTCCTTCCTCAAGCGCTTA
CATAAGTAGTGACACAAGCTTCACCATATGAATAGCTATAAGGTCACTGTACTCATCAAGGTCAC
TGTACTCATCGTAGCTATCTCAACTAATGAACCCAATTACAATGGCATGGCAATGAACCCAATTA
CAAAGAGAAAGAAGTTGCTATCATGATATATTAGATGTTGCTACCATGAGAGGTTTAACTTGCTT
GACCGAAGGGAGGGCAAGGAGAGATAACTGGGAGAAAGAAGTTGCTATAATGAGATATTAGAAGG
AGCTACCACACTATGAACCAGTAGTGGCGTGGGCTAGTTGACGTA
Right flanking sequence: Indices 1105566 -- 1106065
CGCGTGGGCAGAGCAACAGGCACTAGAGATAACCTTGTCTTATGCTTGCATAACGAAGCTTGCAT
AGGCTTGTCCTAGATAAGCTTTATTAAGCTTCATTTACGATTACTTGATCAATGAAAGGGATTAC
TTCATTTACAGCAACCGAATCTACTATCGCTAGCTTGTAACTCACCTACTGCCTCATATCGATAG
CTATCACACCAAGCAATAGCACTCACCCTAACACTGCGACTTACTTTACACTACCCACTGATCAA
CACTACCTGAACTATTCAAACTAACCACTGATGAACACTACCTGAACTACCACTTTAACTACCTT
GCCCGATGCGGACAAGCGGCTTTGCTCCTTGCTTGGTTATCCATCGAGTTCATCTTTCGTCATTT
TTTTTATTAATGAATGGCCTAATGAAGGTCCCAAGTAGTTCTAGGCGGATGATGGATGTACAGCT
GAGCCTTCCTTCCATGTACCCATACCGCAAATAGGCTCATAAATA
Found at i:1105828 original size:17 final size:17
Alignment explanation
Indices: 1105808--1105867 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
1105798 GACTTACTTT
1105808 ACACTACCCACTGATCA
1 ACACTACCCACTGATCA
*
1105825 ACACTACCTGAACT-ATTCA
1 ACACTACC--CACTGA-TCA
* *
1105844 A-ACTAACCACTGATGA
1 ACACTACCCACTGATCA
1105860 ACACTACC
1 ACACTACC
1105868 TGAACTACCA
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
16 6 0.18
17 14 0.42
18 6 0.18
19 7 0.21
ACGTcount: A:0.38, C:0.35, G:0.07, T:0.20
Consensus pattern (17 bp):
ACACTACCCACTGATCA
Left flanking sequence: Indices 1105308 -- 1105807
TTACAATGGCATGGCAATGAACCCAATTACAAAGAGAAAGAAGTTGCTATCATGATATATTAGAT
GTTGCTACCATGAGAGGTTTAACTTGCTTGACCGAAGGGAGGGCAAGGAGAGATAACTGGGAGAA
AGAAGTTGCTATAATGAGATATTAGAAGGAGCTACCACACTATGAACCAGTAGTGGCGTGGGCTA
GTTGACGTAGTTAACTTGCCTCATTAACCTGGAGTGTTACCTTGCACTCATGAACCTGTAGTGCG
CGTGGGCAGAGCAACAGGCACTAGAGATAACCTTGTCTTATGCTTGCATAACGAAGCTTGCATAG
GCTTGTCCTAGATAAGCTTTATTAAGCTTCATTTACGATTACTTGATCAATGAAAGGGATTACTT
CATTTACAGCAACCGAATCTACTATCGCTAGCTTGTAACTCACCTACTGCCTCATATCGATAGCT
ATCACACCAAGCAATAGCACTCACCCTAACACTGCGACTTACTTT
Right flanking sequence: Indices 1105868 -- 1106367
TGAACTACCACTTTAACTACCTTGCCCGATGCGGACAAGCGGCTTTGCTCCTTGCTTGGTTATCC
ATCGAGTTCATCTTTCGTCATTTTTTTTATTAATGAATGGCCTAATGAAGGTCCCAAGTAGTTCT
AGGCGGATGATGGATGTACAGCTGAGCCTTCCTTCCATGTACCCATACCGCAAATAGGCTCATAA
ATAGCCCACCCCGGTGATAGACCCTCCCCATACCGCGTACCCATACCGCGTAGCCATACCGCTAC
CCCACCCCGGTATCAGTCTTTCCTTGCCTGAGGAAGGGATTTATCGCTTGCTCTTCCGAGAGCAA
GGACAAGCAATAAATCCCTTCCAATAGCACCAATATTTGGTTCTTTGTAATCTAGTTTAGCGCCG
ACACAGTTACAGAAGGGAATATGTGATCTTATTAAGGGTGAGCGAGATACGAGCGAACACTCTAT
TTTTTGGTAGGGGCCCCGAAATTGAGGGAATGGCTCGATTAGCGC
Found at i:1106105 original size:13 final size:13
Alignment explanation
Indices: 1106089--1106129 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
1106079 ATAGACCCTC
1106089 CCCATACCGCGTA
1 CCCATACCGCGTA
1106102 CCCATACCGCGTA
1 CCCATACCGCGTA
*
1106115 GCCATACCGC-TA
1 CCCATACCGCGTA
1106127 CCC
1 CCC
1106130 CACCCCGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.22, C:0.49, G:0.15, T:0.15
Consensus pattern (13 bp):
CCCATACCGCGTA
Left flanking sequence: Indices 1105589 -- 1106088
TAGAGATAACCTTGTCTTATGCTTGCATAACGAAGCTTGCATAGGCTTGTCCTAGATAAGCTTTA
TTAAGCTTCATTTACGATTACTTGATCAATGAAAGGGATTACTTCATTTACAGCAACCGAATCTA
CTATCGCTAGCTTGTAACTCACCTACTGCCTCATATCGATAGCTATCACACCAAGCAATAGCACT
CACCCTAACACTGCGACTTACTTTACACTACCCACTGATCAACACTACCTGAACTATTCAAACTA
ACCACTGATGAACACTACCTGAACTACCACTTTAACTACCTTGCCCGATGCGGACAAGCGGCTTT
GCTCCTTGCTTGGTTATCCATCGAGTTCATCTTTCGTCATTTTTTTTATTAATGAATGGCCTAAT
GAAGGTCCCAAGTAGTTCTAGGCGGATGATGGATGTACAGCTGAGCCTTCCTTCCATGTACCCAT
ACCGCAAATAGGCTCATAAATAGCCCACCCCGGTGATAGACCCTC
Right flanking sequence: Indices 1106130 -- 1106629
CACCCCGGTATCAGTCTTTCCTTGCCTGAGGAAGGGATTTATCGCTTGCTCTTCCGAGAGCAAGG
ACAAGCAATAAATCCCTTCCAATAGCACCAATATTTGGTTCTTTGTAATCTAGTTTAGCGCCGAC
ACAGTTACAGAAGGGAATATGTGATCTTATTAAGGGTGAGCGAGATACGAGCGAACACTCTATTT
TTTGGTAGGGGCCCCGAAATTGAGGGAATGGCTCGATTAGCGCCGACAATTGAACCGACAGAATC
TAAAGCTGGATCTGGATCAACGGCTGCTACTGAAGTGACTCGCTTTGGAACTGTTCTGGGTATGG
AACTGGTACTTTACTCGATTAGCGCCGACACTTTTTATTAAGGGAATATTCTATTTTATTAAGGG
TGAGCGAGATACGAGCGAACACTCTATTTTTTGGTAGGGGCCCCGAAATTGAGGGAATGTCTGGA
TTAGTAGTAGCGCCGACACTTGTTTTCGTCATTTCCTTAACGTCG
Found at i:1107201 original size:32 final size:32
Alignment explanation
Indices: 1107146--1107217 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
1107136 CTTTCCTTCT
* *
1107146 AGCTTAGGTCAGGTTATCACTTACTTACGCAG
1 AGCTCAGGTAAGGTTATCACTTACTTACGCAG
*
1107178 AGCTCAGGTAAGGTTATCCCTTACTTACGCAG
1 AGCTCAGGTAAGGTTATCACTTACTTACGCAG
1107210 AGCTCAGG
1 AGCTCAGG
1107218 CTTTGAGGGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (32 bp):
AGCTCAGGTAAGGTTATCACTTACTTACGCAG
Left flanking sequence: Indices 1106646 -- 1107145
ACTTATAACGGATAAGCCAACGTCAATAGGTAGGTCTAATTCTACGGGTCTGATTCTAATGAATA
GGCGTAGCAGGTCCATTACGTTTACCGATGGGGTTTCCTTCACCCTTTCTTTCCCTCTCCCTTAT
AAGTACGCCTATAAAAAAGCGTAATTACATATATAATAAAGCGTAATGACTTCATATGCCCATGA
CCAGCAGCGCACTTAGAAAATGACTTATATTGGGGGGGCATAAATAAAGAGAGAAAAGCGTAATT
ACATCTATAAAGAATGACCGGAAGATCCGGTATTCCGGTATCAAGAATGACTGGAAGAAATGGAC
TTTTAGATCAGAAGTCCGCCCTTAGTTTCAGTCAGTCCTCCGAGTGATTCTTTTTCGATTGAGGG
GAAGGAAGATAGGGTCCTGGTCTTTCTTTTCCGCTAGCTCTGCTAAGTAAGGATTATACCTTACC
ACCTTCTAGCTCTTTGAGGGGAAGAAATAGAGGGCCTTTCCTTCT
Right flanking sequence: Indices 1107218 -- 1107717
CTTTGAGGGCCAAGGATATAAGTCAAGTGCATAAAGTAAAGACTCCTCAAAAGAGAATGAAAGCG
AGCTCGAAGTGCCAATGCAATTTCACTCAAGTGCGAGGAGCAAGAAGGCATCCAAAACCAAAGCA
AACAAGGAAGGATGCAAAGTGTATTGCACGGCACAATAAAAGTGCCATTTTACCTTCTTTTCAAA
GGATTTACGAAGTTTATCCCGCAAAAGAGCATACTCATGACTGTGGCCTATTCAAGAATTGATTC
ATTGGAGAAGGATTTTGTTTTTTTAGATTGAGAGTCACTCGCTGATATAGCTAGCTGCCGTTGAA
CTATCTGCAGATACTGGTTCTTCGTTGTCTGTTGCATTTGTTCGGAGAATAGGCGATGGATGATA
AACAAAGGAAGTCGGGTGCCCATTTACTCTTAGCAGCGCATATCCTTGAATCTGAAGACCTTCCT
CAACCGGCATCAATAGAATAGGTTCATATAGTTGGAGCTGATCAT
Found at i:1109190 original size:20 final size:20
Alignment explanation
Indices: 1109165--1109205 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
1109155 CGGCAGCTTC
1109165 TTGGGCCTCGCTTTCTTTCA
1 TTGGGCCTCGCTTTCTTTCA
1109185 TTGGGCCTCGCTTTCTTTCA
1 TTGGGCCTCGCTTTCTTTCA
1109205 T
1 T
1109206 CGTGTCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.05, C:0.29, G:0.20, T:0.46
Consensus pattern (20 bp):
TTGGGCCTCGCTTTCTTTCA
Left flanking sequence: Indices 1108665 -- 1109164
TCATATGCCTCTATCTGCTTTCTCTGCTCTTTTAAGATGTGCATAACCTCAGCAGCTCTCTTAGG
GTCTTGTCCTACCATCACCAGCTTATCTTCGAGCACCTGCTTTTCTGTCTCTAAGGACTTAACCC
TGGCCATCATATATTGGTTTCAATTAAACACATTGCCTTATTTATTCTTCATATTCTCATTTGAA
ACTGCTGCCCTTACATATTTGTAAAACACCACATTGTTGGAATTTTTGGCCAGCCTCACATGGTC
CATGGGTGGTGCACCTGCTGTTTTTCATTTTATCTGGGCAGCCCTCCAATCCCCCCATTTCAGAT
TTTAACTTAGAAACTTTGGCTCAAGGTGCAGGTGGTGAAAGTTATCCTCTCCTGTGGCTCGGCTC
CATTAAGTCATAAGTTTATAAAATTATAGGCTGAGCCATGGAGTCTGCAGGCTCCAAATCCATCA
AAGCATCTTTGGTAGCTCATCCGGCCCCACACTAACGGCAGCTTC
Right flanking sequence: Indices 1109206 -- 1109705
CGTGTCTCTCCTACCTATTGATTGATGCTCGACCTGCTTTCCCTCTCCTTCCTCTCCCCATACTG
AAAATGCGCCGGCCCCTTCGTTCGGTCTCAATTAAATGAGAGAGGGGTTCAGTTTCCTACTTCGA
ATCCTTCTACCCTCCCTTAGTGGGGCCTTTCTTTCACCTTTTTTATATAACACCATAGACTGAGT
TAGCGTGTCAAAGCACAATACAGATCTCTTTGTCTATCTTATATTTTTTCCCACTTAATTAAGTC
GTTAGGTGAGGAGCGTTAAGCGTCTCGCTCGACCATAGAGAGGGCGAGGAGCGAGGTACGTTAAG
TGACTCTTAGAGGTAGGAGGGCGAGCGACTCCGTACCTTATGCACTTAGATACCTGGCTAATTAC
CGAAAAAGTAAAGATAAGATCGAGTAAGGAAAGATAAGATCGAGTAAGTCGAGTAAGCCGCCCAG
AACCTCAAAGTGGGAAGGGCCCCCAGACAGACGAAGTACTACCTA
Found at i:1109630 original size:20 final size:20
Alignment explanation
Indices: 1109605--1109643 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
1109595 CCGAAAAAGT
1109605 AAAGATAAGATCGAGTAAGG
1 AAAGATAAGATCGAGTAAGG
1109625 AAAGATAAGATCGAGTAAG
1 AAAGATAAGATCGAGTAAG
1109644 TCGAGTAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.28, T:0.15
Consensus pattern (20 bp):
AAAGATAAGATCGAGTAAGG
Left flanking sequence: Indices 1109105 -- 1109604
GCTCCAAATCCATCAAAGCATCTTTGGTAGCTCATCCGGCCCCACACTAACGGCAGCTTCTTGGG
CCTCGCTTTCTTTCATTGGGCCTCGCTTTCTTTCATCGTGTCTCTCCTACCTATTGATTGATGCT
CGACCTGCTTTCCCTCTCCTTCCTCTCCCCATACTGAAAATGCGCCGGCCCCTTCGTTCGGTCTC
AATTAAATGAGAGAGGGGTTCAGTTTCCTACTTCGAATCCTTCTACCCTCCCTTAGTGGGGCCTT
TCTTTCACCTTTTTTATATAACACCATAGACTGAGTTAGCGTGTCAAAGCACAATACAGATCTCT
TTGTCTATCTTATATTTTTTCCCACTTAATTAAGTCGTTAGGTGAGGAGCGTTAAGCGTCTCGCT
CGACCATAGAGAGGGCGAGGAGCGAGGTACGTTAAGTGACTCTTAGAGGTAGGAGGGCGAGCGAC
TCCGTACCTTATGCACTTAGATACCTGGCTAATTACCGAAAAAGT
Right flanking sequence: Indices 1109644 -- 1110143
TCGAGTAAGCCGCCCAGAACCTCAAAGTGGGAAGGGCCCCCAGACAGACGAAGTACTACCTATCA
GTAGCGGAACTGGCCCAACCCCAGCCACACCCCAGTCGTCATTGGAAAATCATGTACCGATAGTT
TTTTCTATTCATTTTCATTTTAGTTATAATCAGTTGGGAGTAGGTGGTGGTAGTAGTCAGAATAG
TGGTAGTAGTGGAACACATTCCAGAGTTAATCAAGGAGGTCATAGTTCACCCCAGTTTAAAAACC
AGAGTTTTGTAGCGCAACTAGGACCTAGAGGGTTCATTATAGTTGGACTTTCCCCTAGCACTATG
GTAGGAACACAGGGAAGGTCCACTCTAAGGTTACCATAGTTATCAGGCAGAAGTGAAGAAGATGT
TTAACAACATTGGTTCCTTTGTGAAGCCATTTGGAGAGCCAAAGGAACTACTGATGCTAACAAGT
TAGTAGAATTTAATACAACCCTGCGAGGAAGAGCATTACAATGGT
Found at i:1112912 original size:15 final size:15
Alignment explanation
Indices: 1112892--1112920 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1112882 AGCTCATTGG
1112892 CCTTGGCTTACTTTA
1 CCTTGGCTTACTTTA
1112907 CCTTGGCTTACTTT
1 CCTTGGCTTACTTT
1112921 CTTTCAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.28, G:0.14, T:0.48
Consensus pattern (15 bp):
CCTTGGCTTACTTTA
Left flanking sequence: Indices 1112392 -- 1112891
AACCAATCAATAGGCACTTGATTGAGAAGGGAGTTTGAGGGACGACGGTTGGTGGCGTGGCCTTG
TCGATGGTAGATTCTCCTCTGTGAACCTGACCTTAGATCGAGTACCTGGTAATTTCAATACTGAA
AGGTGGCCTTTGAAGATCATGGTTCCTATAGCGAGAAAGTGAAGCATGGTCATTATTAAGTCAAG
GTCGATGAGGTATCGATCGCTGAAACCCCGTATTTTCGAGAGCTAAGAAGGGACTGAATCCTTTA
AGTGACTATATTATAGCCAGTACATATATCTAGCCAGGCAAGCCCCTATAAACATTCCCCTACCC
CAAAAAATAGAGGGACGGAGTCGCTCGTCCGAGGTAGGAGGGCGAGGGTTTCAACGCGCAAAAAA
AGAAACTCATCATATGGGTGAGGGAGAGGAGAGCAAGGAAATTTGTTCGTTAATTTCATTAAGGG
CCATTAAAAGACTGGGCCATTGGCCTACTACTTTTAGCTCATTGG
Right flanking sequence: Indices 1112921 -- 1113420
CTTTCAATTGTTACACCTTCTCCCGTTCTCAGTCTGCTATGCCTTACACTTACTCCTCAATATGC
TTAAAAGTGACTCATTATGTATGTATGGATATCTAGCTAGGGCAAGACCCTTTCTTTCCTGGGGC
CATTCAAAGCCTTATATATGAGATATCTAGGGCCAGAACCTGGGCCATTCAAAGCCAAGCCAAGG
AGCATATATATCTAGGGCAAGAACCCCAGACTTTGGTATAGCCTATGAAATTATATTTTGTAGGG
GGCCTCAAATTTTAGGAGTATGTGAGGGTCGAAAATAGGCCAATGGATGGAGGGTTTACGTAAGA
TTGAGATCTCGGGCCAAGGAAAAATAGAATAGCGTAGCAGTGATATCTCGAAAAATAGCAGCTAA
GGAGGTGGAGGATTGACTTCTTCGGGGTGGGTGGTATAGTTCGGTTAGCTTGTTAGTTAGATTTG
GCACGGAGTGCTTCTCTCTTTCTAACTACCTCATGCATGGTTAAT
Found at i:1118147 original size:21 final size:21
Alignment explanation
Indices: 1118123--1118163 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1118113 CCCCTCAAAG
*
1118123 GCTTTCAATACGTTACGCCTA
1 GCTTTCAATACGCTACGCCTA
*
1118144 GCTTTCAATATGCTACGCCT
1 GCTTTCAATACGCTACGCCT
1118164 TGAATAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (21 bp):
GCTTTCAATACGCTACGCCTA
Left flanking sequence: Indices 1117623 -- 1118122
GTTGGGATAACCTACACAAATTAACAAATGCTCTCTCAGCCATTCATTCGAAGTACTCTAAAGGA
AAGAAGAGAGAGCCCCCCCTCTTTTTCCAATCACTAACTGGACTAAAACGGATACATAAGGGCCG
AAACTGCTAAGGGAATTCCATCCGGCGTAAGCATCTGGATAATCTGGAATGCGACGTGGCCGAAA
CAATCAATGCATGGGAAAGAATAATTCACCCCGAAAAGAGTGAAAATGGATTTGACCTAATGAGA
GGGTTATCCCTCGCACCAAGATCGAAACGAAAACCTCCGCTGCTTAGTATTTGCCCAATCCGCGC
GGACTGATTCTTTATTCCCCTCAATCGATCAATCACTCAGGACTGACTCACACTCAGGGCGGACT
GATCTAAAAGTCCATTTCTTCCAGTCATTCTTTCTTTTATATACGTAATAATACGCTTTTTATTC
TTTTCTATCTAGTGACCGAAAGCGCTTGATTTCTTCCCCTCAAAG
Right flanking sequence: Indices 1118164 -- 1118663
TGAATAGGAAAAACCCTACTAGGGGAAGGGGGCGGGGCCCCTTGCTCCGCTCGCCCACGCTGCTC
GTTCGTTATAGTATAGATGGTTTTACATATATGTCTGAATGAAAACGAATGAGAGATAGAAGCGA
TAGCTCCGTGGAGCTTTCTCTGCGGTCCTGTTTGTTGCAGGGCCCAGCTGATAACGGAAGAGTTT
ACCACCATCTGAAATGCACGAAACTTCGATTGGTGGGAGCCGGTTCATGAGGATCATCCCTTTTC
TTACGTGCAATTCCCCTCTTTCGGTAAGCATCCGGTATCTCAGCAGATAAACATTTCTCTGAGCT
TATCCTGTTGCTTATACGTCGTTTGAAAGCTGCTCCAAGGATCCAACGAATAGCTAAGGTTTGTT
GACGATCCCTGGCTACAATCTCAGGTACATTATGAGTGGTACCTGCTACTCGTACTTTCCCCACT
TCGCATATGGGCTTTATATTCCCTACGGCGTTAACCAGAAGTTTG
Found at i:1121262 original size:13 final size:13
Alignment explanation
Indices: 1121244--1121270 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1121234 ACATGCTCGT
1121244 AAGTAAACGCTAG
1 AAGTAAACGCTAG
1121257 AAGTAAACGCTAG
1 AAGTAAACGCTAG
1121270 A
1 A
1121271 GTGCGTAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.15, G:0.22, T:0.15
Consensus pattern (13 bp):
AAGTAAACGCTAG
Left flanking sequence: Indices 1120744 -- 1121243
TTCCCATCAGAACATTTTGCTAAGCATTTCATATCGCCGAGAAGTTATCGGAGATGTTTACAAGG
TAGATTCCTCCATCAATGAAGTAAGGAGGCTCCTTCTCACGCCTTCTATTTTGGTGCTCCCAAAC
TTTATCGGAATGGGCGGGGGAGCAACGTGACAGGAGCAGCGGAGCCAGCAGCACCAGTAGCAGTG
ACAGGTCCAGACTAAGCAGTTGATCCGGGTGATTTTGTTAAATAGCTCTATTGGGAGATCTATCT
ATCTCTTTCGTTTCATTCGTACGAATTGGGTAGGTATTTAAACCCACCCTTGAAAGAGCGATCAG
GTGAGGCAAATCAATCTAGTTATTCGTTTCGGTTTCGTTCGAATAAGCTGTAAGAGATCGGGAAG
GTAATCGCTCATTTATAACGATATAACGCATATTCTTCCTCAATATATGAAAGCTATCTAATTTG
GTTTGTTATGGAAAGTCAAAAGGAAAGGTAGCCTAACATGCTCGT
Right flanking sequence: Indices 1121271 -- 1121770
GTGCGTAACGTAACATCTTCCTATTCTGTCTGAGGATAACAAGGAAAACCAACTGTCCAGTATCT
ATTGACAGATTCTATACGTAACATGCCTCAACTACCTGGGGGTGAAGGCTGGAGGGATAGCTCTA
GTTGTTGAAGTTAGGGAGGTAATGAACTAGAACTATCGAGAAGGAGGGAGGGAGGTAATGGAGAT
AGGGCCCGAGCAAGAATCTAGTCCATCCGGGGTTGTTAGCCAAGGTGTGGGGCAAGGAAAGGAAG
AGAATTCACGAGGGCCCCCGATTGATTGTTTAGGAAGGATGGCATGGCCATTTTAGTGCCCAGAC
ACTTTGAACCTGGCGCTGGCGATCTTTTTGAGGACAGAAGTACGCTTAGAACGCATTTTTATTTA
CAAAGATGGGGTTTGGTTAATGAATGGGGGTATGGCTGCTATTTAGACTCTGCCTACTCACCTTC
ACTGTTACCACTATAAAACCACCTGCTTTACCCACCTAGAGACAC
Found at i:1122695 original size:17 final size:17
Alignment explanation
Indices: 1122673--1122706 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1122663 CTAGCAAGTA
1122673 GAACATTACCAGCTTTC
1 GAACATTACCAGCTTTC
1122690 GAACATTACCAGCTTTC
1 GAACATTACCAGCTTTC
1122707 ATTGAACAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (17 bp):
GAACATTACCAGCTTTC
Left flanking sequence: Indices 1122173 -- 1122672
TGAAGGTTAGTCGCTTCCTACCGGCTGAGTCCCAACTAGTTTCATTGTTAACAGTGACGTTACTT
CCTCCCATCCTATCTATAGTTGCGTGCTCTTCATCTTCCCTTGCATGCTCTTCATCTGGAGGTGA
AGGCAAGCTCCCACCCGGAGATAGATATCCTCTATGGGCCTCCCATCCTATCTATATCCTGCCGA
TTGCATCCATCGATCAGGTTTACCCGAACGAACAATCCAACTATAGGATAGCCGGGCCGGGTAGC
TCCTTCCTCGTTGAGCTGGACCGAGGGACCTAACTACTTCTGGATTGAACTCCTTTCCGTTAAAG
CAGGCAGGGTCGGTTGAACTCCGGAGAATACTTTATTGTTTGGCTGGCAGGAACGATTGATTGTT
TGGGCCTTCATTCACCAGTGCTGAAGGAAGGCAAGCTCGAGGGATGGATAAACAATCTTGTATCC
GCCCGAACTAGTTGAATTCCCGAACGATTAAACGACTAGCAAGTA
Right flanking sequence: Indices 1122707 -- 1123206
ATTGAACAGCCGCCCTCAACTAATCAGGGAGTTATAGCCGATGGCAACTCTATTAGCAGCAGCAG
CCATGGATGGCAACTCTAAGCAGCCGGGGGGGGCACTAGTCCCTCTCCCCAACAATGATGTATTA
TTCCCCAACAATGATGTTTTCAAAAGGGAATGATGTGGGCAGGGATGGATGCAAAGAAAGAAAGT
TAGCTCATACAGAAGGTCCGATGGAAACTAGTCGAGGAGCTACCGGGGGTGATGAGGGATGGCCA
ACTGGGATCGGAGGATCCTATTTAGAGGATGGGTAATTCAGGTCCAGCTCAGGTTACCCGGCCCA
TACAACTATAATCGTTGGATTGTTCTCCCTCGGGACAGGAAACAAAGAAAGGATGGCAGGGAGGA
GCACCCCCTGTTGGCTAGTCCCATCCATTTTAAAGTTATACCATCCTGGGGCCCAACTCCTCGTC
CAGGGGGCTATTTAGCAGCCGGCAACAATATGGTACAGGGTTAGT
Found at i:1123289 original size:41 final size:41
Alignment explanation
Indices: 1123242--1123323 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
1123232 ATTATTGTAC
* *
1123242 AGGGGGCTACTATGC-ACGAGGCAACTATATAATCGTACAGG
1 AGGGGGCTACTAT-CAACCAGGCAACTATATAAACGTACAGG
*
1123283 AGGGGGCTACTATCAACCAGGCAACTATATAAAGGTACAGG
1 AGGGGGCTACTATCAACCAGGCAACTATATAAACGTACAGG
1123324 GAGCAATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 36 0.97
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.18
Consensus pattern (41 bp):
AGGGGGCTACTATCAACCAGGCAACTATATAAACGTACAGG
Left flanking sequence: Indices 1122742 -- 1123241
AGCCGATGGCAACTCTATTAGCAGCAGCAGCCATGGATGGCAACTCTAAGCAGCCGGGGGGGGCA
CTAGTCCCTCTCCCCAACAATGATGTATTATTCCCCAACAATGATGTTTTCAAAAGGGAATGATG
TGGGCAGGGATGGATGCAAAGAAAGAAAGTTAGCTCATACAGAAGGTCCGATGGAAACTAGTCGA
GGAGCTACCGGGGGTGATGAGGGATGGCCAACTGGGATCGGAGGATCCTATTTAGAGGATGGGTA
ATTCAGGTCCAGCTCAGGTTACCCGGCCCATACAACTATAATCGTTGGATTGTTCTCCCTCGGGA
CAGGAAACAAAGAAAGGATGGCAGGGAGGAGCACCCCCTGTTGGCTAGTCCCATCCATTTTAAAG
TTATACCATCCTGGGGCCCAACTCCTCGTCCAGGGGGCTATTTAGCAGCCGGCAACAATATGGTA
CAGGGTTAGTGGGGCTAGCAGCTTTAGGATAACTAATTATTGTAC
Right flanking sequence: Indices 1123324 -- 1123823
GAGCAATTCACCAGCCCGCAACTATATATCCGAGCGTTAGGAGACCTAATTATCGTCCAGGTATT
GTTTGCGTAACAATACACATAGAGGAAAGCTCAGAAAGGCCCTATTATATATAATTATAACGCGC
GATAAGGGCATCTTTGGGCTCCTTCTACCGTTCCATTTAACAGGATAAAATATATATACAATTTA
TATCTATCCCATATAGAATATCTATCCCATCCATATAGAAACAATATATACTACCATCAGCCCTA
AGTGAGTTATTTCCTCGCCATCTGCCTGAAGGGCCCCTGACTACAACCAGTGACTTAAGAATAAA
ATAATTTATAAAATGGAGGAGTGGTCCGAATGGTAGTAGACAAAATATATATACCTATATATAAG
GTAGGTAATAGCCCGCCCGAAGGGAGTGAATTCCCAATCTATAGGGAGGTACCGGACCAAAGGGA
GGAAGTCAGGAGAGGCTATTTTATATGAAGGCCCGTGCCTAAAAG
Found at i:1124051 original size:13 final size:13
Alignment explanation
Indices: 1124033--1124058 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1124023 AGAGATCCCA
1124033 TTCCTAGAGAAGG
1 TTCCTAGAGAAGG
1124046 TTCCTAGAGAAGG
1 TTCCTAGAGAAGG
1124059 GGTGAAGCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
TTCCTAGAGAAGG
Left flanking sequence: Indices 1123533 -- 1124032
AGAATATCTATCCCATCCATATAGAAACAATATATACTACCATCAGCCCTAAGTGAGTTATTTCC
TCGCCATCTGCCTGAAGGGCCCCTGACTACAACCAGTGACTTAAGAATAAAATAATTTATAAAAT
GGAGGAGTGGTCCGAATGGTAGTAGACAAAATATATATACCTATATATAAGGTAGGTAATAGCCC
GCCCGAAGGGAGTGAATTCCCAATCTATAGGGAGGTACCGGACCAAAGGGAGGAAGTCAGGAGAG
GCTATTTTATATGAAGGCCCGTGCCTAAAAGGTATAGTGTCAGTCTCAGTGACAGTTTTGTCCCT
TCAATAAATAAATATAATTAATCAATCCAATAGTAAGGCACCAGGCTCACAAGAGTCGGGGACAG
AGCGGAGACATCAGGCTGACCCAGTGGACCGGGGACAGAGCGAGGGAAGGACACAGCACAAGAAC
CAGCCTTGTTGTATCATCACAGAGTGGCTCGGGCCAGAGATCCCA
Right flanking sequence: Indices 1124059 -- 1124558
GGTGAAGCGGCACACCTACCTGACCAATCTATGCAAAGCTAGGTGGCACGGGACCTACTTATGTT
GCATGGGTTGCTAAAATAAAGGTAGCATGTCTAGTGGACGAGGGTGAGGAACAGATTGCACTCGG
TACATGTCCCTTCATAAATAAGCTCGCGAAGGCAGCCATTTATACGGCAATAAGAAATGAAAGTG
GGAAGCAGAGGCAGCAACTATAGATACGGCAAGGAAGCTAGCTCGGGCTATGGTTTATCAGCAGA
GGACCCTCGAAACAACGTTTAAGGAAGCTACCCGGCCGTATACGTAAGGTGCAACAGGGGGAGAA
GTACCCGAGAAAGGACGTGAACCAAGTGAGAGCAGCCACCCACGATCTACCTACAAACAGCCAGC
CAGATGGATAAGTCTTTGGTGAAGTAATGATGTAGGTAGGTCATTGCTATTGATGTGGGAGCAGA
GGTGGGTGCTGCTATTGATAGGGCGGCGGCCTTATGATGTTGGCA
Found at i:1132046 original size:15 final size:15
Alignment explanation
Indices: 1132026--1132058 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
1132016 AAGAGAAGTC
1132026 CCCCTTAAATCCATA
1 CCCCTTAAATCCATA
*
1132041 CCCCTTCAATCCATA
1 CCCCTTAAATCCATA
1132056 CCC
1 CCC
1132059 AAGAGAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.48, G:0.00, T:0.24
Consensus pattern (15 bp):
CCCCTTAAATCCATA
Left flanking sequence: Indices 1131526 -- 1132025
GCTTGACTTATTCTGGGAAGAAAGGAAAGAGGAATTCATTTAGTCTTACGGGAAGGGATAAACGA
ACCAACAAGCCTGCAGACACCAGTCACCATAAAGCCATGTGCCTTTCACCAGGAAGAAGGATGGA
AAGAGGAGGGGAGCCGGTCCATACATATATGATCTAGCATATATACGTTTACCTTTTCCTTTGTA
ATTTGTATAGCCGACCAAGAGGAAGTAGAAAATCCCACCCAGCCAAGTTCCCGACAGACGAGGAG
ATATTGAGTTCACCCAACCAAGTAGACACGGATAGAGAAATGAATGCTGCTGCTGGCCGTATCGG
AACGGCCAGGGAGAGGTAAGACACTTACAGCTCATTCCCCTCCTTCCTACACCCATCCAAAGTAC
CCTTACTGCTAGATGAGAGAAGAAAAGTCCGCCAAGTTCGCGTAAAGCACCCGCCCAGTCCGATC
AGTACGCCCAGTACGCCAAGTCCGCCAGATGAGAAAAGAGAAGTC
Right flanking sequence: Indices 1132059 -- 1132558
AAGAGAGAAGTTTCCCATCATAGCTAGAGAGATGTACCCCATGCGACATAGAGTGAATGGCTAGA
CGTGTTGCTAGAGTGAGGTGACTAGCTCGTGGGTGGGAAAAGGGGACTATGTGCTGTGAACGACG
GCTATGTGCATGCTGTTAATGACGGCTAGGCGATACCTTCATACCAAGAGCGAGTTACTACTGCG
CATTATATATGATTCACCTGTTTAGGTTAATACGCCTTACATAGAAGAGATATCACACGCCATAG
ATAAAACACGCCATAGGTGGTATCACACGCCATAGATAACACATGCCATAAAGATTAGAGGTTTC
ACACGCCTTACGCAGAGAGACATTCAGAGAGGGGAGGGAGGTTGAGCCATCACTAGGAGCCATAC
AGGTAGGGAAGGGAGGGGGGTTAGGCTTGCCCAGAAAGTTCTTGATTGATAGCCACATGAGAGGG
GTGGTTCTGCCACATGTGAGGGGTGATCCCACGGACTAAAACCGT
Found at i:1132366 original size:16 final size:16
Alignment explanation
Indices: 1132301--1132368 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
1132291 TACATAGAAG
*
1132301 AGATATCACACGCCAT
1 AGATAACACACGCCAT
*
1132317 AGATAAAACACGCCAT
1 AGATAACACACGCCAT
* *
1132333 AGGTGGTATCACACGCCAT
1 A---GATAACACACGCCAT
*
1132352 AGATAACACATGCCAT
1 AGATAACACACGCCAT
1132368 A
1 A
1132369 AAGATTAGAG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
16 28 0.68
19 13 0.32
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.18
Consensus pattern (16 bp):
AGATAACACACGCCAT
Left flanking sequence: Indices 1131801 -- 1132300
AACCAAGTAGACACGGATAGAGAAATGAATGCTGCTGCTGGCCGTATCGGAACGGCCAGGGAGAG
GTAAGACACTTACAGCTCATTCCCCTCCTTCCTACACCCATCCAAAGTACCCTTACTGCTAGATG
AGAGAAGAAAAGTCCGCCAAGTTCGCGTAAAGCACCCGCCCAGTCCGATCAGTACGCCCAGTACG
CCAAGTCCGCCAGATGAGAAAAGAGAAGTCCCCCTTAAATCCATACCCCTTCAATCCATACCCAA
GAGAGAAGTTTCCCATCATAGCTAGAGAGATGTACCCCATGCGACATAGAGTGAATGGCTAGACG
TGTTGCTAGAGTGAGGTGACTAGCTCGTGGGTGGGAAAAGGGGACTATGTGCTGTGAACGACGGC
TATGTGCATGCTGTTAATGACGGCTAGGCGATACCTTCATACCAAGAGCGAGTTACTACTGCGCA
TTATATATGATTCACCTGTTTAGGTTAATACGCCTTACATAGAAG
Right flanking sequence: Indices 1132369 -- 1132868
AAGATTAGAGGTTTCACACGCCTTACGCAGAGAGACATTCAGAGAGGGGAGGGAGGTTGAGCCAT
CACTAGGAGCCATACAGGTAGGGAAGGGAGGGGGGTTAGGCTTGCCCAGAAAGTTCTTGATTGAT
AGCCACATGAGAGGGGTGGTTCTGCCACATGTGAGGGGTGATCCCACGGACTAAAACCGTACACA
TACACCAGTCAGAGACAGGAGACCTTGCCAGGAGACCTAGACCCTTTACCTAGACCTTTACTCTT
TTGCCAGTCACCAGATGCCTTTACCCTTCCGCCTATCACCTCTAGCCAAAGCCAGTCCAGCAAGA
AGTAGACGTCAGCAAATCAATCTTAGATATGCTGTTACTTACGTCGATTCAGCATTTGAGGAGCA
GAAGACAATTTTTTATGTTGAGGAGCTTATTGTTTTATAATTACGTATATAACGCAAGCTTAGAG
TTCTTCTCAGATATTTATTTTTCAATGGACTACCAGGCAGGCAGG
Found at i:1133293 original size:25 final size:25
Alignment explanation
Indices: 1133265--1133317 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
1133255 CGAGGTTAAT
*
1133265 ATCTCACGTCCCAATGCAAGGTACA
1 ATCTCACGTCACAATGCAAGGTACA
* *
1133290 ATCTCACGTCACAATTCGAGGTACA
1 ATCTCACGTCACAATGCAAGGTACA
1133315 ATC
1 ATC
1133318 CCCCTCCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (25 bp):
ATCTCACGTCACAATGCAAGGTACA
Left flanking sequence: Indices 1132765 -- 1133264
AATTTTTTATGTTGAGGAGCTTATTGTTTTATAATTACGTATATAACGCAAGCTTAGAGTTCTTC
TCAGATATTTATTTTTCAATGGACTACCAGGCAGGCAGGGCAGGCACAAAGTTAGGATGGTCCAG
ATATTCAAAATATTCTCATTCACTAGGGATCATGGGTTGGAATCATGGGTTGCGATCATCCGCTT
GGATACTCGGACTGGGATACTCTCCTTGGATGGAAACAGTCATTGCTGCGAGGTCATTGATAGCC
GCCGAGCATAGCCGACATAGCCCACCCTTACAGCCAAGCATAGCCGAGCATAGCACCTGCCCACC
ATACAAGCAAGCCCTTTCCCCACACCACATAGCTGAGCATAGAAAGACAGACAGAAGGTCATTGC
TGATGGCCGATAGTCGCCAGGTAGGTGTTATCCAGGGTTAGATCCAAGTGTTTAGGCACTCGATG
CTTAGCTTTATACTTGAATCTAGTTAACTCCCCATCGAGGTTAAT
Right flanking sequence: Indices 1133318 -- 1133817
CCCCTCCATTTTCAATCGACCACCTCACTTACGCATACGGAACACACAACGTTCCTACATCGATT
TGACTTAAGGGATGAATCAACAAACAATGCTTACTTACAATGCGAGGATGAGGATCATACAACAG
ACACTTAGTTGCAGTCACGCTAATCAGGTACTGCCAGTAAGGGAAGGTGGGTGATGCTTTATAGT
TATCAATTGAGCGCCTACCAGATGCGGCGAAGGCACCAAGTTCGCTTGGAACAGATTTCACCAAA
CGCATTTGGATTTTCCATTTTGATAAATCTCATTTTTAGGGGCTCCAGGACACTTAGTGTCATCG
GGGCTACTAAAAATGCTTTATTATTAATGAAGATTGGCATTTACAGAAGTTTATCTATATTTCGC
GGGATGCCTTCGATTGCTGGGCCGGGCTACTCGACCGGACTGCTCGTTTGGCTACTCTGCTTGGC
TACTCTTCTCCACTTGGATGGGCGGGGATACTCAACTGGGGATAC
Found at i:1133843 original size:13 final size:13
Alignment explanation
Indices: 1133825--1133868 Score: 88
Period size: 13 Copynumber: 3.4 Consensus size: 13
1133815 TACTTGGCAG
1133825 GGCTGGGCTTATA
1 GGCTGGGCTTATA
1133838 GGCTGGGCTTATA
1 GGCTGGGCTTATA
1133851 GGCTGGGCTTATA
1 GGCTGGGCTTATA
1133864 GGCTG
1 GGCTG
1133869 CTCAGCTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.14, C:0.16, G:0.41, T:0.30
Consensus pattern (13 bp):
GGCTGGGCTTATA
Left flanking sequence: Indices 1133325 -- 1133824
ATTTTCAATCGACCACCTCACTTACGCATACGGAACACACAACGTTCCTACATCGATTTGACTTA
AGGGATGAATCAACAAACAATGCTTACTTACAATGCGAGGATGAGGATCATACAACAGACACTTA
GTTGCAGTCACGCTAATCAGGTACTGCCAGTAAGGGAAGGTGGGTGATGCTTTATAGTTATCAAT
TGAGCGCCTACCAGATGCGGCGAAGGCACCAAGTTCGCTTGGAACAGATTTCACCAAACGCATTT
GGATTTTCCATTTTGATAAATCTCATTTTTAGGGGCTCCAGGACACTTAGTGTCATCGGGGCTAC
TAAAAATGCTTTATTATTAATGAAGATTGGCATTTACAGAAGTTTATCTATATTTCGCGGGATGC
CTTCGATTGCTGGGCCGGGCTACTCGACCGGACTGCTCGTTTGGCTACTCTGCTTGGCTACTCTT
CTCCACTTGGATGGGCGGGGATACTCAACTGGGGATACTTGGCAG
Right flanking sequence: Indices 1133869 -- 1134368
CTCAGCTATGATACCGGGCTGCTGGGCGGGAATACTCGACTGGACTACTCCGCTTGGATACCCAG
CTACTCAGCTTGGCTAATTGGATACTCTACTGCTGCTTGGCTCGGATACTACTCGACTGGACTAC
TCAACTGGGCTTACTCGGCCTGGGCTCATGGGATCCTGGGCTGCTGCAGACAGTCAGTGCCTAGA
AGATACGGCGGTCAGTGATAGAACTCTTCTCAGTCAGTTTGTTAATGAAGTCTACTCCATGGGAG
GAAGCTCTACTCATGCTCTACTCATCGAAACTCTACTCAGTGAGGGCATGAACCTCCGGTCGGTA
CAGGAATGAGGAAGCTCTAGTCAGCGATTTAAGCTATTGTAAATGCATGACGAAAGAACCTATGG
TTTGTGCAGCTAGTCAATGCTTTTCAATGCTGCTTGCCGATGCCTGTTTTCGACGCCAGAATAAA
GATGGCGGGCAGACGATGCAATTGCTTCGGAGCAATAGCGAAGTT
Found at i:1134561 original size:34 final size:29
Alignment explanation
Indices: 1134514--1134574 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 29
1134504 CGGTAAGACT
1134514 GGCTTTTCACCCACTCCAAAGTCTGGAGGATA
1 GGCTTTTCACCCA--CC-AAGTCTGGAGGATA
1134546 GGCTTTTAGCACCCACCAAGTCTGGAGGA
1 GGCTTTT--CACCCACCAAGTCTGGAGGA
1134575 GGCAAGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
31 12 0.44
32 9 0.33
34 6 0.22
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (29 bp):
GGCTTTTCACCCACCAAGTCTGGAGGATA
Left flanking sequence: Indices 1134014 -- 1134513
CGGCCTGGGCTCATGGGATCCTGGGCTGCTGCAGACAGTCAGTGCCTAGAAGATACGGCGGTCAG
TGATAGAACTCTTCTCAGTCAGTTTGTTAATGAAGTCTACTCCATGGGAGGAAGCTCTACTCATG
CTCTACTCATCGAAACTCTACTCAGTGAGGGCATGAACCTCCGGTCGGTACAGGAATGAGGAAGC
TCTAGTCAGCGATTTAAGCTATTGTAAATGCATGACGAAAGAACCTATGGTTTGTGCAGCTAGTC
AATGCTTTTCAATGCTGCTTGCCGATGCCTGTTTTCGACGCCAGAATAAAGATGGCGGGCAGACG
ATGCAATTGCTTCGGAGCAATAGCGAAGTTGCTAGCTCGCAATGGCCCAGCCAGCCAGCCAGGAA
ATGTATTTTGAAAATAAAGAATTATAAGAGGACATAACCCTAACGTATGAATATATAGATAACTG
TATGATCGGTCGAGTATGCCCCCGCGTATGTATATCGGTAAGACT
Right flanking sequence: Indices 1134575 -- 1135074
GGCAAGTAAATAGCACTTGAAGTTGACTCAGAAGCATTTGACCTAGTTACAGATTCACCAGCAGC
GAAGTAAGCAGTTTCTTAAGTTGCCTGAGTAGCAGTGACATTTGAACTGGGGGACCGAGTTTATG
AACCAGTCTCGGAAACAGAAGCAAGGAGGGTGGGAGCAGAACCAGATCCATAGGGGTATAGGCGG
ATAGAGCAGCGTTGGTGGCTAGAGCATAGGTAGGTGCAGTTGAAGCGCTTAATTCATAACCAATT
CTACGCGCGGTTCCTGATCTATACGCATTTCTTTTGGATCCTGGTTCAGAGCCACATGTTACCTT
TATTACAAGTACTGATCCCATTGATATTCCCATCATTACTATTATGTAACTACCATTGATTTAAG
TAGGTTAATTAGGGGCTTGATAGGTATAGTAAACCTTTAACCTGCACGCAGTAAGTCGTTCGGTG
GTAAGGAGAACGCATAACACGTGTGTCTAGCTTAGTCGGCGCAAA
Found at i:1135531 original size:17 final size:17
Alignment explanation
Indices: 1135509--1135543 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1135499 TTTGTAGGTG
*
1135509 GGTAAGGCATTGTCAGA
1 GGTAAGGCAATGTCAGA
1135526 GGTAAGGCAATGTCAGA
1 GGTAAGGCAATGTCAGA
1135543 G
1 G
1135544 AAAAGGGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.37, T:0.20
Consensus pattern (17 bp):
GGTAAGGCAATGTCAGA
Left flanking sequence: Indices 1135009 -- 1135508
CACGCAGTAAGTCGTTCGGTGGTAAGGAGAACGCATAACACGTGTGTCTAGCTTAGTCGGCGCAA
AGTAAGCCTTGACCTTGCTTTACAGCCCTGAGCAATATAGAAACCAAAAAAGGAATTTTCATTAG
AAGGAATGATAAATTTGAATGATCAAAATTTGACCTAGGTATGATGAAGATAACCCACACCAAAT
CACAAATGCCCCCTCACACTAGGGGTACTCAAACAAAGATGGGGATTTAACACATCGATCTTACT
CGTCCCAAGCCAACTATTCAATTTGAGTATTAAGGAGAAGCACATTCAAGATATTAAGGCCATAG
TGGTGGCAAATTTAGACATGGTTTGGTAAAAAACTTAGATTTTAAGAAGAACAAGCTTCTTTTTA
CTATTCACAGGAAAACCCTCTTCCTTCTCATGGTCGGGAACCTTATTATCTTGCTGAGTCAGGTT
ATTTATAGAATGCTCTAGGTATGAAGACAACTTACTTTGTAGGTG
Right flanking sequence: Indices 1135544 -- 1136043
AAAAGGGTGGTCTCCAGTTAAAGAATTCAATGCTGGTGTGGACCAACTCCTTTTATTACCCAAGA
GAGAGGGAGGGTCCTGCCCTTCCTTTATAGTAAGGGTCCTTGCCTTCCTAAGGTTCCCGGTCCTG
GCTAGATAGAAAGACAATAGGGGTAGTCATCTCCAACAGGTCTCCTGGTCCTGCCTGGTTCTAAG
CATGGTCCTGCTAGTTCGGCAGAAACTGGCTTCCTCCTGGTTCTAAGCTCAGTTTTTTTTTGCTA
TTTCCTTCCCCTCCGGAGCCTATTTTGGCGCGGCTCCGCTCCTTTCTTTACTTAATCTCTTAAGG
GGGACCTTACTTCGTGATTTCAGAACCTTACCTACCTCGTTATCTCTGGGTTTCCAATCTGGACA
TATACTTCTATTACCTGACTTGTACTTCGTTATCTCTATATCTTCTCAGGACCTTACTTCGTTAT
CTCTTCTTTCATTATTGAATATTCTCTTGCTTTACTTAGTTATCT
Found at i:1137488 original size:30 final size:30
Alignment explanation
Indices: 1137448--1137505 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
1137438 AAGGCAATAA
* *
1137448 GGTACTATCTCATTCGT-TAGTTGGATCACT
1 GGTACCATCTCATTCATCT-GTTGGATCACT
1137478 GGTACCATCTCATTCATCTGTTGGATCA
1 GGTACCATCTCATTCATCTGTTGGATCA
1137506 ATGGGACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (30 bp):
GGTACCATCTCATTCATCTGTTGGATCACT
Left flanking sequence: Indices 1136948 -- 1137447
GTCCATGGCGACCTCCTGTAAATGAGACCGGGTATGACTGTTTGGCTACAACTACTGGGCTATGT
GCTATTGGGAATGCCCCTTTCTCTGTCAATGCCCTTCTGGGTATGATCAACTAAGATTGGCTATT
ATTGGTTATGGCTCTATCTCCTGGTGTAACTCAGATATAGTGCCGTAGGAGTGTACCAGGCGTAC
TTACATGGGTGGTGCCTTACTTTACTGGTATGGGCGATTAGCTCTAGGCTCAAGCAGGCAACACA
GGAGAGAAGGCGACTAGATTAGGGCTTTCGGTGAAGGTCCCACTTGGTGTGCTGGCTCAAGTAGT
TCCAGGTGGGCTTAGTGATGATCTTTTAGTTCTAGGCTTTTTGTGAATGTTTCCTCCCTCTGTAT
AGCCAGTGTAGGCGCATTATCCTAAAAGAGTGAATCGACGTATGTAAAAGCATTGTAATTCCTTT
TATTTAGTAAGGCTATAGGGTCCAGGCAAGAGGGTAAGGCAATAA
Right flanking sequence: Indices 1137506 -- 1138005
ATGGGACTATCTATCTGTGCCGTTGTCCGTCCGTCGGACCATCCCACCTCAGGCAATTAATCAAT
CAAGCATCCACAATGCCCCTCTCTGTCGATGTCTTTAGTCCGTGGGACCGCCCCACCTGAAATAA
ATATGTGGTCAATCAATCACTATCTGGCATCCACTGTATGCGCCGCTCTCTGCGGATGTGGGCCC
TCAATCAATCCACTATAGGGTGCCAATCCTTCCCTGTGTCTTATTCCCCTTTGATTTGTCCCCTT
AGGTTCCTTCGAGTAGGCCCTGTGAGTACGCTCTGTGTCTTATTCCCCTCCCCATAGAGTAGCCC
CCTGTATATTAGGCCCCTCGCTGCGGCTTAGTCCCATTGAGTAGGTCCTGCGGATTAGTCCCCCT
TCAATTAGGTCCCTTGGATTAGCTCCCATGTGTTGTTGTAGGACCTCCGGTTCCGTCTCGTTCAG
TGACCTGAAGCAGTATAATGCCATAGCGTAGGTTCGTTCCCTCAT
Found at i:1139470 original size:13 final size:15
Alignment explanation
Indices: 1139452--1139488 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
1139442 GATGGATTAA
1139452 GTTACAC-GATGA-G
1 GTTACACAGATGAGG
1139465 GTTACACGAGATGAGG
1 GTTACAC-AGATGAGG
1139481 GTTACACA
1 GTTACACA
1139489 ATTAGGGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
15 6 0.29
16 8 0.38
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (15 bp):
GTTACACAGATGAGG
Left flanking sequence: Indices 1138952 -- 1139451
AGGTGCTCAACAAAAAAGCGAATGAGTGTGTTTTTTTGGAACCGGTAGCCCATCTGATTAATCAG
GTTGAGTAGCTGAGTTCCCATCAAAGTAACCAAGTATCCAAGCCTATAAGCCAAAGCGAGCAGCC
AATCCTCCCATCCCATGAGCCCAGCTCAGCTAAGTATCTTATACCGAAGCTGAGACGCTCTCGCG
CCTGGTATTTATTTACCTTATTTTCAATTACCTTTTAGATAAAGAAGAGAGAAATAAGTAAAGCC
GTGGGTATAGAACAGTTTTCACGCACTTAGAACCGCTAGCTCCTGTTCACATGGGATTGAAACCC
AGGTGTGCACAAACAACCTCCTAGGCATGGTGGATTGAAAGGAATGTGGTAAAGGTAATGCTTAC
TGAATGCGGGCAGAAATAGAAAGGTTGGTTACACGTTGCAGGTTACACGTGGATGCATTATGTTA
CACAATGCTTTTTTTTCGTTTGATGCTTTAGGTACGATGGATTAA
Right flanking sequence: Indices 1139489 -- 1139988
ATTAGGGGAGTGATATGAGGGTTCCGCAAGATGAGGCTTATACAATGCAGGTGAGATGAGGTTTC
CACAATGCAGGTACGATGCTTTATTTTACACGATGCAGCTGGTTCGATGCTTGAGGTATGATCCG
CTTGAGGTTCGATGCTTTATTTTACACAATGGAGGTTACACAATCATTAGGTGGTTAGTTAGGTT
AGGGGCTTTACCGATAATACCCCTTGCCCAGTTAGACGTGATTTGTCCCCACCTGTTGCAATACT
CCGTGCCCTGGAGATGGTGGTTGTCCACGTGTGACCCGTTGTGAACGGTCGGAGATCCCCCGTAA
CCCAAAGGAAGTGTTCGTACGTGAACAGGAAAGGGGTTTTTTGTCCCCACCTGTTGCCATTCCCA
CGTGACCAGGATGGTGACGTTACCAGTTCTAAATCCCCCAGGCCCAGGAGGTGCCGATTCACTTG
TTTAGCCCCAGTCCGATAGCCACAGTCCGCATTCTCCCGCATTCC
Found at i:1140580 original size:12 final size:12
Alignment explanation
Indices: 1140563--1140587 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1140553 TACTTAGCAT
1140563 CTGTCTCTTCAG
1 CTGTCTCTTCAG
1140575 CTGTCTCTTCAG
1 CTGTCTCTTCAG
1140587 C
1 C
1140588 GGTTTACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.36, G:0.16, T:0.40
Consensus pattern (12 bp):
CTGTCTCTTCAG
Left flanking sequence: Indices 1140063 -- 1140562
TAAGTAAGCATTCAGTACGCAACTGCCCACATCTTCAAGAGGGAGGGGTACCACGGAAGGATTAA
CAACAGCCTACAGCTACCGAGAGGAGATATTTCCCACTTTGGATAATATAATATATAATGCACGT
TAATGCGCCTATACCTTAAGGGGGACTTAGTCGAGTGGATCCGCTTATGGCTACCATCTGAAGCA
ACACCTACCAGCTTGGGGGCCGCAGGCACTCAGTTTGGTGACCCAGATCTTAGAAAATCTTCTCA
GTCACTATTCTTCTTTCCAGTCTGGTCATTTAGAAGTTCAGGTACAATGCTCTAAGTTACAATAC
TCATCGGTAGCTTTCGGAGTGGAGCTCTTGCTCGTGCCCGTTTAGTTTATACCGTTTCCAAATTC
ATGTTCCTTAGCAAGTAAGGAAGTCGCTCTAACATGTTCCGTGGCATAAGTTGCTCCAACTGAAG
TGGTGAGCCCCTGGATCTAAGTTTAGCGGATCTAGTACTTAGCAT
Right flanking sequence: Indices 1140588 -- 1141087
GGTTTACTCCTATGTGTAGTTCATATAAACTATATGCGGCGTAGTTAATAGATCCGATTGGTTCA
AAGGGGCAAGGAGGCATTCTGTAGAATGCCGACTAGAAATATGCATTTCACACTCACTCGGAAGT
AGGTCTCGGTCATTGAGAGAGATTCAACCACGCGTGTGACTGACGGACGGTGAGAAAGACTTGGA
CGATCATTTACATCTTCATGGTCCGGTTCCAAAAGTGGTTCTCGCAACCGATGTGATGTCAGCAG
CTGGCTCTTAAACCTCAGCATCTGGCTATCGATGCACCTGGGTAGACGACCAGAGAAGGTTCCGC
GCCCGCCTCATCTCATCTGCCAACAAAGTCGGATTCGCCAGTTGACTTCTACTATGTCTGTGTTT
CACAGCGGTCTTAGTCCCTTCCTCTCTTATCTTACTATGCTGGTGAGCCTTTCTCTTTCGGAGAC
GACAAACAGTGTTTCGCCATCTGGAAGATCCGCTTCAGCTTTTGT
Found at i:1144683 original size:14 final size:14
Alignment explanation
Indices: 1144664--1144694 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
1144654 TATGCTTTTA
1144664 CAACTGATCTCCAC
1 CAACTGATCTCCAC
1144678 CAACTGATCTCCAC
1 CAACTGATCTCCAC
1144692 CAA
1 CAA
1144695 TAGCACTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.42, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACTGATCTCCAC
Left flanking sequence: Indices 1144164 -- 1144663
AGCTTCCCCCTCTACTGCTCTCTCTACTGCAAGGACATTTGAAGCTATCTGGACCACCTATCATT
TTACTCTCTGGATCTTCGCCGCTGCTTATTTTACCGCACTTGTGGAGACTTTGACTGCTTCTTGC
ACTTGATTGATCTTTGCTTCTCCTTTACTAATGCATGTGGCTTTTACTGCTTTCCAAATTTCCAT
CATGGCTTTATTGAGTCTTTTTCTCTTGGCGCTTGCTACTATATATGCTTCTGACATTATTGCTA
TCTATGGATGGGGGTTCAGCTACTTTTTATCTTGCGTGTGACAGGCGAAAGAATTTAATTTAAGA
ATGAATTTCACGTACACTTGCAGATATGAATTTGAATTTTTGTGCGCATGAAAAGTACGTCCACA
GGCTCACCATTTCAACTGAAAACCCAACCCCTTTCTAGTAGCAAATGATTGGCTCACTAATAGCT
ATTTGTATGCAGGAATTCTCAATTTGGTTTGCTTTTATGCTTTTA
Right flanking sequence: Indices 1144695 -- 1145194
TAGCACTAATCATCGCTCTTACACCTACCACTCATACCACTACTACTGCTATCAGAGCTTTTATG
TTAATGGCTTCTACAACTGCTGATACATCATTTGTAGCTACAGCTGCTTCCTCTCTGGAAATATT
GATTCGCTGAGCTACTTACATGATTATTGTAATCGCTACCAAATAGCTTGAGATCTTGGCATATT
GATGGGGGTGGGAGGCACCAACCAAAATGAAATAGATATAGAATCCAATGTAAAAACTGCTAGCA
ATACATGATCGGATCCACTACGAATTGGAAAATTAGCCACAAACATTCGTTTCACCATACAGATG
AGCAACCAACAGGGTTCATCGGAAATGACGAAAAAGCAGAGCACTTCGAGTTTCAGCATGCATCA
TTATAGAAGGAATTAATGCATCTATCTTTGGATTTTTGAATCAAATTTCGAATGATGTTTCCAAG
AATCAAGTTTCGAATAGAATTGACCCTCTATCTGCCCGGGAATGA
Found at i:1152016 original size:14 final size:14
Alignment explanation
Indices: 1151997--1152023 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1151987 TTCTCTCTGG
1151997 CATTGACCTAGCTT
1 CATTGACCTAGCTT
1152011 CATTGACCTAGCT
1 CATTGACCTAGCT
1152024 ACGCCGACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (14 bp):
CATTGACCTAGCTT
Left flanking sequence: Indices 1151497 -- 1151996
ATAGTTCAATAATAGCCGGCAACATCCCTTTCAGATAAAGCAGATTCATATCCAGTTCCAAAGCT
AGTTTTTAGCCGTTTATTCAGTTTACCAAGCTGATGGACTTGAACCCATTGCCCTCCAGAAAGCC
AGTGCCCTACATGCCCCAATTTACCCCTTTTCCACGCTACATGCCCTCACGAAGCATTCATTCAG
CCAGCGATTCATTCAGCGATTGGAGCGATTCATTCATTGAGCGATTTAAGCCCTGCCCTACAGGC
CCTCACGCAGATTCATATCCAGTGGGCCCTTATGACCTTATGAGAGAGACCTTATGCCAGTTTCC
TCTCGGTTTCTCTACTTCCAACCTACCCACCTACCGGAATGCACCCAGAGTCTCCCAGCGAAGAG
CAATCAATGAATTCCAATCGACAAGGTCCCCGTCAACCGAAGAAAGGAAGGGGAGGATACCTCTG
CCAGGTTGTTTTCTTAGCTCAGCGGCAAGCCCGTCTTCTCTCTGG
Right flanking sequence: Indices 1152024 -- 1152523
ACGCCGACCTCCTCATGCATGTACGCTTACCTCTATCTACCAACCTCTTCCCACCCCTAGCTACC
TTCATCAACTTCTACCTAGCTCCCTCTGCATCTACGCATGCATACCCAACACCATGAAGGAGCTT
TTAGGGGAGGGGGCAAACTGATATCATCAATCATTGGGATAACCTTATCGCTACGAGAAAGAAGG
GATAACCCTTCGCTATTCGAGGGGAGGTAAGGTAAGGCGTAACGTATTTAAAGCCTTTGAGGGGA
AGAAATCAAGGGATAACCAGATATAGGTGGAAATAATAAATGGAATGAAACTAGTAAGGCAAGGC
TATAGCTAACGCTCTTAAGCCAGTTGCTAACGCACGCTTAGAAAGGAAGGCCCGCCTACCAATCA
AAGAGAGCCTGAAGCCTTCGCTCGTTGCTTTTCATCCGCCGTCTCTTGCTGGGAAGCAGCTCCAA
AGCCGTAGCTTACACCCTTCTCCCAACCTTCCATACCTGTAATCC
Found at i:1154371 original size:24 final size:24
Alignment explanation
Indices: 1154278--1154359 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
1154268 TTTCGGGAGG
*
1154278 AGAAACTGGAGCTATTGGTTC-GA
1 AGAAACTGGAGATATTGGTTCGGA
** * * *
1154301 GAGAAAGGGGATATGTTGG-CCAGGA
1 -AGAAACTGGAGATATTGGTTC-GGA
*
1154326 AGAAACTGGAGCTATTGGTTCGGA
1 AGAAACTGGAGATATTGGTTCGGA
1154350 AGAAACTGGA
1 AGAAACTGGA
1154360 TATGTTGTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
23 1 0.02
24 39 0.91
25 3 0.07
ACGTcount: A:0.33, C:0.11, G:0.35, T:0.21
Consensus pattern (24 bp):
AGAAACTGGAGATATTGGTTCGGA
Left flanking sequence: Indices 1153778 -- 1154277
TTGTCGCTTGTTTAGCAGGGCTTGTCTTTATATGGCTGGGGTCAAGAGACAACAAAACTTGAGTG
CGGAAGGAGACAGTCACTGGCTCGTTCGTAGGACACTCTCACTCGAAACGAAACAAAAGATCAGA
CTCAGCTAGCCATGAGACAAAAAAAAAACTATAAGAAAGGGGACAGTCATGGGCTCGTTCTTAAG
GTGGTACACCTCCATACTTAACAAAAACCTAATTGGACACTTCAACTGAATGCCCAGGAGTAACT
GAATGCCCAGGAACCGAGATTTCATCCTCGGCTCTTATGGGAATGCTATTTCGAGGAATGCTGCT
TCCGGATAAACTAGATATGTTAGTTTGGCTGATGCCGGTTTGAATGCCTCCTCTGACTGAGACAG
AGGGTTTGGCTTCTGGTTTGGATGCATATGGGGATACTGAGCCGTCGTCTGATGCTGAGGGGGTC
GGGATATAAGGGATCGGGAGACACCGGAGCTGTTGTTTCGGGAGG
Right flanking sequence: Indices 1154360 -- 1154859
TATGTTGTTTCGACGTCTGCCGATGCGTATGCAGCAGATTAGGACGTGGATGGAAATGTGGATTA
TGGGGATGCTTCCTCTTTGAAAACCTGAGGAATGAATAGCCCAGTTCCCTTATGAAGTGAAACAA
CCGTATAGTCTTTGCTCTCCTCTGGATCAGTCTCCCGTGTAGTGAAAGAGTCTCCCAGCAGAGCA
GTAAGTAGTAGTCCCAGTAGCGGGTGGTCCTCTTGCCTAGCGGAAGGAAGCCCTTCATGCTATCG
AAAGACATTGCACATTGCAGCAGTCTAACCGCGCTTGCTTTGGGCACCACCCCGGGCACAGCAGA
ATGAGAAGGCTCAGCGCACTAGCCTAGCGCACTCAAGCAGCTCAGTTTGTTTTCCTTTATTCCCG
CTAAAGCGCTCTAGTTGGGTTGGGTGACGCGCACACCGCTTGTTGATTGCATTCGATTTCATTAT
GGGTAGTTCTACTACTAAAGAACGGCAAAGACATGATTTGCTTTT
Found at i:1156917 original size:16 final size:16
Alignment explanation
Indices: 1156896--1156929 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
1156886 CAGACAGTAA
1156896 AGTTTAACCCACCTCT
1 AGTTTAACCCACCTCT
*
1156912 AGTTTAACCCACTTCT
1 AGTTTAACCCACCTCT
1156928 AG
1 AG
1156930 CCAGCAAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.32
Consensus pattern (16 bp):
AGTTTAACCCACCTCT
Left flanking sequence: Indices 1156396 -- 1156895
TCAAAGAGGAAGGGCCAGAAGAAAATAGTCAATAGTATAAGAGCCGCCTCCCCCTATATCTTTAG
GTAGAAACCAACAACCAATAATATCATTAGAGAAGCGCCTCCTTTCTCCGACTAATCCGGGGAAG
CCAGATAGTCTCGCCGGGAACCAGATCGATTCAGAACGAACGAATGCGCCAATGCGCCCGCCAAC
GCGCCTTGATTCAGCGCCTCTAAGGCGACGAATGCGAGGATGCTCGGTGGCGAATATTGTTTCAA
TAATATAAAGTAATTGCCAAATTGGTTGATGAAATAAGTCTTCGAGTTACTCCCTTATAGATAAG
GTAATTATAAGAACGACTTCCTGGTTTATGAGGTAAGTATTTGGACGACTCCCTTCTTGAGAATG
CAATTATGCAGAAATAGCAGAAGCGGAAATAGCTTTGTATCTTTCCTCGCCCTGACCAATAAAAA
TATCCTTCCTATCCAGTAGTTTAACCCACCCAAGACAGACAGTAA
Right flanking sequence: Indices 1156930 -- 1157429
CCAGCAAGCGTTAAGCCACCCGTTAAGCCTGCCTGCCAGTAATAATCAATATATCCCATCCAGCA
AGCCCGAATGAATCTATTTATGTGAATTTATTTATGAAGGAAAGTAAGTACGATTCATAGTCCTT
TCAGGCCGCCAATGAATCTCTCTAGGTACGGAAAGGCATAACTTACTTCTTCCTTTCAAACGATG
AGGACCGCCTACCTAGTGCTTCCCTGAGAATCACAAACGCTATAGACAGAAGAGACCTGGCGTGC
TTCCTTGCTTGAGAACCCTAGTTTGTTGCGTGGGGCCCGTTACCCCCACAGACTTGAAACGACCG
CACGCAGGAGCTTACCTTACTAACTACGCTGCTTTCCTGAGAACAAAAAACAAACGCCGTATGCT
TTACTGACTTAGGAGCTTACCTTACCTTACTTACGAGCTTCCCTGAGAACGACGACCGCATAGTT
AGTTTTTTTAGTGCTTACCTTTGTTAGTGCTTACTTACTGCCTTA
Found at i:1158212 original size:23 final size:24
Alignment explanation
Indices: 1158185--1158230 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
1158175 GTGAACCGGT
*
1158185 CAAGGTAAGG-CCATAGGTATAAG
1 CAAGGTAAGGACCATACGTATAAG
*
1158208 CAAGGTAGGGACCATACGTATAA
1 CAAGGTAAGGACCATACGTATAA
1158231 CTGCTTGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.17
Consensus pattern (24 bp):
CAAGGTAAGGACCATACGTATAAG
Left flanking sequence: Indices 1157685 -- 1158184
GCCTTACTTTAGGAGCTGACTTGAGAACGACGGACGACCGCTACATCTTGGTTTATGACCTTAGA
ATGACCACCGCATAGTGAATGAAGTTTGTGCTTGCCTTACCTTACGAGGCTTACGACCACTACAT
CGTGCGTTAGTGAACAGGCCGATTGTACAGGACGGGCTCGAAAACTTCACCGTCTCTGTCCATTA
GATGCTCATCAGTCGGGTTTGATTTCTTAAAATAGTATTGGGATGGGCTGGTAAAGAAGTTGATT
GTAAAGATGGGAGGATTTGGAATATGGACTTTCTTGGTACTGTACTGTACTGTGGCTCCTAAGTA
ATAGGGAAGGAAGGAGCCCAGCCGTACTGGGTGTTTTTGCTTGGCCTTTCAGAGGTTTCACTTTG
GTTCCTTCGTACCTTGATTCCTTGGTTTGTCTGGTCCCGAAGTGACTGCACCTGGCAAGGTAGGT
ATTAAGCAAGTAAAGTACTGTCCTGAAGTAAGAGCGTGAACCGGT
Right flanking sequence: Indices 1158231 -- 1158730
CTGCTTGCTTCGCTTCTTCCCTTCCCTTCCTTTGGTTAGTACCGAAAGAAGGAAGGTGACTCGAC
CAAAGAAGGTATTAAGCAAGTAAAGTACTGTCCTGAAGGAGAAAGAAACCTACCCCCGTACTCTG
TACCTGGTTCAACTATTTGGCAATACCCCCTTGACCCCGTAGATTAGCCTTTGTAATGCCCCGAA
CTTACAGCATTGGATCGGATGGATGGAAGGGCTTCAAATAGAGCATCGTTGGACGGGACGGGCGT
TCGACAACACTTGTGCTATATAATCTTACTTGATACGGTACTTAGACCTTTGCTATTAACTTGGT
CAGCCTACTTTATTTATGATTCTTTTCAGTTGGACCTACAGCAACCACCAGTTGTGATGGGATCG
TTGGAGCTGCCCTCTTTTTGAACTACTGCCTTAACTTCAGAGATTATATGGGCGGGCACGAAGAA
CATCGCCATTTACCTGCCGGCCTACAGAATGAATGTCCGTTGGAA
Found at i:1159033 original size:30 final size:31
Alignment explanation
Indices: 1158997--1159074 Score: 104
Period size: 30 Copynumber: 2.5 Consensus size: 31
1158987 TCCTTCTGGC
*
1158997 AGGCTTCACCCCTGTTCTTTATAGAG-CCAG
1 AGGCTTCACCCCTGTTCCTTATAGAGACCAG
*
1159027 AGGCTTCACCCCTTTTCCTTATAGAGTCACCAG
1 AGGCTTCACCCCTGTTCCTTATAGAG--ACCAG
*
1159060 AGGATTCACCCCTGT
1 AGGCTTCACCCCTGT
1159075 CAGCGCTAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
30 24 0.59
33 17 0.41
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.29
Consensus pattern (31 bp):
AGGCTTCACCCCTGTTCCTTATAGAGACCAG
Left flanking sequence: Indices 1158497 -- 1158996
ACACTTGTGCTATATAATCTTACTTGATACGGTACTTAGACCTTTGCTATTAACTTGGTCAGCCT
ACTTTATTTATGATTCTTTTCAGTTGGACCTACAGCAACCACCAGTTGTGATGGGATCGTTGGAG
CTGCCCTCTTTTTGAACTACTGCCTTAACTTCAGAGATTATATGGGCGGGCACGAAGAACATCGC
CATTTACCTGCCGGCCTACAGAATGAATGTCCGTTGGAAGCGACCCACCCAGTCTTGGATCGTTG
GAACAGCCAGCCTACCAGCCACTGTCTGGGCTCCTACGAGAAAACTCGACCGAGATCTGGTGAAC
CTCGACTTTGTCATATATATATCCTGGCGAACCAAAACCAGGAATCTAAATATAAATATAAAAGA
TATTACGTCTGAAAACCTGGCTCTAGTTCTATCAAGGTATGCGAAGAATCCTCTCATTTGATAAG
TTTTTGGTGGGGTTTCAGAATCTTCGTTCCTATATTCCTTCTGGC
Right flanking sequence: Indices 1159075 -- 1159574
CAGCGCTAGAGCCAGAGGATGATCCCCTGCCTGATCCAGAGGCTTTGGCACCGCCGTCTTTCTCA
CCCCCTCCCTCCCTGCGGCACTGCTGTCCGTCGTTTATAACCCTCCTGCTGCTGCTGCTGCTCAT
GATGAAGAGCTCCCATCCTCTAATGACGCTTTTCCTCTCTGAAAGATGGTTTAGCCTCTGGGGTT
GGGATAGAAAGCAAATAGGAAATATAAGAGTATTAAGTATTTCCATCTCTGTATGGCAAGCTCTT
TCCTGCCCTTGCCAATGAGACAGGCTATTACAATCACTGGCTGCTATTGGCGACCACTAGCTCGG
GACCTACCTCCTCCATCCTGGGTATAAACACTTGGCATCGAGTACCGGCAATTGATTCCTGAAAT
CTAGCGGTAAGTGGCTAATCGCGTCGGGTCTGTAATTGGGCTAAAGTAATTGGTCACAACTAGGC
AATTGGTTACAACTGGTAAATAGGTCTCAAGTAATTGGGCTCAAC
Found at i:1168666 original size:14 final size:15
Alignment explanation
Indices: 1168628--1168678 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
1168618 ATCCACCAGC
* *
1168628 AGACTCTACAGGGCA
1 AGACCCTACAGGACA
1168643 AGACCCTACAGGACA
1 AGACCCTACAGGACA
* *
1168658 ATA-CCTACAAGAGCA
1 AGACCCTACAGGA-CA
1168673 AGACCC
1 AGACCC
1168679 ACCAAAGCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 8 0.28
15 19 0.66
16 2 0.07
ACGTcount: A:0.39, C:0.31, G:0.20, T:0.10
Consensus pattern (15 bp):
AGACCCTACAGGACA
Left flanking sequence: Indices 1168128 -- 1168627
AACCGATGAAGCAACTCGATCCGCATATAAACAAAATATGAATATGTAATGAGCTATCGAACTAA
AGAGAGATGTGGGCACGGGAATTGGAACGTAAACCAATACACAATAGATCATCGCTTGCAGCAGC
TTGCACAGCGGATGAACAAGTGGTTTTAATGATAGGTACCTAGGCAGAGATAGAGAAAGCGGCAT
ACCTTATAGTTAGAGATCTAGATCCATACCCCGCAGTGAGTGGGGAAGGCAGCAGATCCAGGTCC
CTTTTACCTATCAGCAGACGCAAAATCGAGGTGGCAAAGGCATAAGCACCACCAATAAAGGCGGC
TAGAGCACGGACATAGGAGGTAGCTAGACCAAGTCCATTACCAGAACCACCAGCAGCAATAGATT
CTTTTGATTATACTTTTTATTACGCTGTTAATTCAGTAGATGTTGAGTCGGATGATCCAGTCGAT
GAAGCAGTCGGTGAAGCACGCAGAGGCAGCAATAGATCCACCAGC
Right flanking sequence: Indices 1168679 -- 1169178
ACCAAAGCCATTCTCACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAGCAGCACTAGCACC
ATCACTAGTATCAGTAGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCCCGGTATCCCAGCC
CAGCAATCGATTCCATCCTGCGACTTAATTCTACATGAAACACATAGCTTAGATAATAAACTATA
TAGAGCATATACTTATAGGCGTAGAAAATACAATATCTCTGGTGATGCATTTTTCTCCGGTACTC
GCTGGTAGGCCATGCCAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCTGGTAGGTGCGATC
CAGGTGTCGATCCCAGGAGTCGATCCCACTACTCAATGCCAAGAGTCGACCCAGGTGTCAATCCA
CTCAATGCCAACCAGTCATTGCCTCAGGGTGCGGCCTTGCCGGGAGGCCTTGCCGGGAAGCCTCA
CCAGGAGAACTATAACATAGCACAATACCTTGACCCTCCAACTAT
Found at i:1169025 original size:13 final size:13
Alignment explanation
Indices: 1168999--1169031 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
1168989 CTGGTAGGTG
*
1168999 CGAT-CCAGGTGT
1 CGATCCCAGGAGT
1169011 CGATCCCAGGAGT
1 CGATCCCAGGAGT
1169024 CGATCCCA
1 CGATCCCA
1169032 CTACTCAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.18
Consensus pattern (13 bp):
CGATCCCAGGAGT
Left flanking sequence: Indices 1168499 -- 1168998
CCACCAGCAGCAATAGATTCTTTTGATTATACTTTTTATTACGCTGTTAATTCAGTAGATGTTGA
GTCGGATGATCCAGTCGATGAAGCAGTCGGTGAAGCACGCAGAGGCAGCAATAGATCCACCAGCA
GACTCTACAGGGCAAGACCCTACAGGACAATACCTACAAGAGCAAGACCCACCAAAGCCATTCTC
ACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAGCAGCACTAGCACCATCACTAGTATCAGT
AGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCCCGGTATCCCAGCCCAGCAATCGATTCCA
TCCTGCGACTTAATTCTACATGAAACACATAGCTTAGATAATAAACTATATAGAGCATATACTTA
TAGGCGTAGAAAATACAATATCTCTGGTGATGCATTTTTCTCCGGTACTCGCTGGTAGGCCATGC
CAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCTGGTAGGTG
Right flanking sequence: Indices 1169032 -- 1169531
CTACTCAATGCCAAGAGTCGACCCAGGTGTCAATCCACTCAATGCCAACCAGTCATTGCCTCAGG
GTGCGGCCTTGCCGGGAGGCCTTGCCGGGAAGCCTCACCAGGAGAACTATAACATAGCACAATAC
CTTGACCCTCCAACTATAACCTCGAACCTCTACCCTTGATCTCTTCACCTCACATAGCTCTGATC
ATCGCCGGTAGTCATTGCTTGAAGGTCATTGCCACTAACTAATAGCCTTTCCTTTTTGATTATAG
CTAGTCATAACCTGTTTTCATTGCCGATATAGCCAGTTGTCATAGCCAGTCTCATTGACAGCAGG
TGAAATGGAACCATAGGTATCTACCCTACTCTACCTCTTCCTCGAACCTCGACGGAGGAATAAAC
ATAGCCCTCGACCCTCTCATTAGATCTTTTTATTTTTATAAAACAACTTCAATTAATAAAATCAA
TTGTGTCTCCCTGCTCCTGCTTCACCTCCTAATCGGGATCAAATC
Found at i:1169117 original size:13 final size:13
Alignment explanation
Indices: 1169101--1169131 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1169091 CTCAGGGTGC
1169101 GGCCTTGCCGGGA
1 GGCCTTGCCGGGA
1169114 GGCCTTGCCGGGA
1 GGCCTTGCCGGGA
*
1169127 AGCCT
1 GGCCT
1169132 CACCAGGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.32, G:0.42, T:0.16
Consensus pattern (13 bp):
GGCCTTGCCGGGA
Left flanking sequence: Indices 1168601 -- 1169100
CGCAGAGGCAGCAATAGATCCACCAGCAGACTCTACAGGGCAAGACCCTACAGGACAATACCTAC
AAGAGCAAGACCCACCAAAGCCATTCTCACAGCTTATCCACCACCAGCACCAGTACCAAGGTAAG
CAGCACTAGCACCATCACTAGTATCAGTAGTTTAAGTAACAGCAGATTATTAGGCAAGACAAGCC
CGGTATCCCAGCCCAGCAATCGATTCCATCCTGCGACTTAATTCTACATGAAACACATAGCTTAG
ATAATAAACTATATAGAGCATATACTTATAGGCGTAGAAAATACAATATCTCTGGTGATGCATTT
TTCTCCGGTACTCGCTGGTAGGCCATGCCAGGTTTCAATCCAGATGGCGATCCAAGTGTTGATCT
GGTAGGTGCGATCCAGGTGTCGATCCCAGGAGTCGATCCCACTACTCAATGCCAAGAGTCGACCC
AGGTGTCAATCCACTCAATGCCAACCAGTCATTGCCTCAGGGTGC
Right flanking sequence: Indices 1169132 -- 1169631
CACCAGGAGAACTATAACATAGCACAATACCTTGACCCTCCAACTATAACCTCGAACCTCTACCC
TTGATCTCTTCACCTCACATAGCTCTGATCATCGCCGGTAGTCATTGCTTGAAGGTCATTGCCAC
TAACTAATAGCCTTTCCTTTTTGATTATAGCTAGTCATAACCTGTTTTCATTGCCGATATAGCCA
GTTGTCATAGCCAGTCTCATTGACAGCAGGTGAAATGGAACCATAGGTATCTACCCTACTCTACC
TCTTCCTCGAACCTCGACGGAGGAATAAACATAGCCCTCGACCCTCTCATTAGATCTTTTTATTT
TTATAAAACAACTTCAATTAATAAAATCAATTGTGTCTCCCTGCTCCTGCTTCACCTCCTAATCG
GGATCAAATCAATAAATCTTCCATCAATCATTCCTTCAACGCCGTCCCTTCCTTGTCCCTTTCCG
TCAACATGTCTGTTGGCTGCCCTCCCTCCGTCGGGGTTATATAAG
Found at i:1170267 original size:22 final size:22
Alignment explanation
Indices: 1170237--1170298 Score: 106
Period size: 22 Copynumber: 2.8 Consensus size: 22
1170227 TTCCTTCTGT
* *
1170237 TGCCCTACTTGGACTGTGTGGG
1 TGCCTTACTGGGACTGTGTGGG
1170259 TGCCTTACTGGGACTGTGTGGG
1 TGCCTTACTGGGACTGTGTGGG
1170281 TGCCTTACTGGGACTGTG
1 TGCCTTACTGGGACTGTG
1170299 CGGGCTGGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.10, C:0.21, G:0.37, T:0.32
Consensus pattern (22 bp):
TGCCTTACTGGGACTGTGTGGG
Left flanking sequence: Indices 1169737 -- 1170236
GCCATCCCGCTCCTTTCCTTCTTCATCTCCCGGCAGAATACTACTCCCGGTTGTCATAATCCAAA
TCATCCAGCTCCTCAATCAATCAAGTAAAAGCCCATCCCGGAAGACCTGTCTTGTAAGCGCATCC
CCCCGTAATACTGCCCCGTACACCCCTCTAAGAAGACTGTATTTCTCAATCAAATAAATCACTCC
TCAGTGGGCTTGGCAAAAGGGTGAAGGCATCTATCTGTTGTCCTTCTGTTGTCCTTGTTGAGGTG
GGCGTGAGGTTAGGCTAAAGGTAATTTGCTAGAGGTGCTAGGCATCTGTTGAGAGGTTACAGGTT
ACAGGCTGATAAGAGGCTCAAGGCATCTGGTGAACGGCTTAGTTCGGGGCTCCTTCCCACCCGGT
GAAAGTCTAAAGGTGAAAGGCCCCTGGTGAAAGACAAAAGGTGATGGTTGGGTCCCCACGGTGAA
GGTTTTTTTGCTAAAGGTGACTGATGATAGGCTGATTCCTTCTGT
Right flanking sequence: Indices 1170299 -- 1170798
CGGGCTGGCTTTTCAAAAGGTGAAGGCAAAAGGTGAGAGGTTACAGGCTGACATCTATGGGATTT
GGCTTAAGGGTTTCAAGGTGAAAGGTTTGTGTGATACTTTCTTCCTTTAGCCTTTTTTTTAACCT
TGAGCCTCACACCTTCAACCTTTATATGCCGGTACTTATGACTGGTGGTGATCCCAGGGTGGAGG
AGGTACCGATTCACTTTTGCCAATATTGAAAAGAAGTACCAGGTGCACAAACAGGATTGCAGCAT
GCCGAGAATAAGGTACCGTAGGAATAAGGTAACGCACCGGGAAGAAGGTACCGCACCAAACTACT
TTGCTCGTTGGTACCCCTCAACCCCACAAACAACGGACGAAGGAGACATTGTAGCCCGAGGCGGC
AAATCGACAGGCAGGCTCGCTCCCCCCTGGGCTCTTTGCCTGGCCGGGAGGATCGGCAAAAGGGG
ACGGCTTTAAGGCCACTCTATGAAGTGAAGTCTCATGTTAAATAA
Found at i:1170606 original size:19 final size:19
Alignment explanation
Indices: 1170579--1170615 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1170569 AGGTACCGTA
*
1170579 GGAATAAGGTAACGCACCG
1 GGAAGAAGGTAACGCACCG
*
1170598 GGAAGAAGGTACCGCACC
1 GGAAGAAGGTAACGCACC
1170616 AAACTACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.24, G:0.32, T:0.08
Consensus pattern (19 bp):
GGAAGAAGGTAACGCACCG
Left flanking sequence: Indices 1170079 -- 1170578
TCAAGGCATCTGGTGAACGGCTTAGTTCGGGGCTCCTTCCCACCCGGTGAAAGTCTAAAGGTGAA
AGGCCCCTGGTGAAAGACAAAAGGTGATGGTTGGGTCCCCACGGTGAAGGTTTTTTTGCTAAAGG
TGACTGATGATAGGCTGATTCCTTCTGTTGCCCTACTTGGACTGTGTGGGTGCCTTACTGGGACT
GTGTGGGTGCCTTACTGGGACTGTGCGGGCTGGCTTTTCAAAAGGTGAAGGCAAAAGGTGAGAGG
TTACAGGCTGACATCTATGGGATTTGGCTTAAGGGTTTCAAGGTGAAAGGTTTGTGTGATACTTT
CTTCCTTTAGCCTTTTTTTTAACCTTGAGCCTCACACCTTCAACCTTTATATGCCGGTACTTATG
ACTGGTGGTGATCCCAGGGTGGAGGAGGTACCGATTCACTTTTGCCAATATTGAAAAGAAGTACC
AGGTGCACAAACAGGATTGCAGCATGCCGAGAATAAGGTACCGTA
Right flanking sequence: Indices 1170616 -- 1171115
AAACTACTTTGCTCGTTGGTACCCCTCAACCCCACAAACAACGGACGAAGGAGACATTGTAGCCC
GAGGCGGCAAATCGACAGGCAGGCTCGCTCCCCCCTGGGCTCTTTGCCTGGCCGGGAGGATCGGC
AAAAGGGGACGGCTTTAAGGCCACTCTATGAAGTGAAGTCTCATGTTAAATAAAACAGGATGCCG
CCCTTTCCCCCTTCATCAGCTAGAGAGAAGGACCACTTCACCACTGGTCGAGAGGAGAAGGAAGT
CCACCATTACACCCCGAAAAAGAAGAAAGAGACCAGTCTCCTAAGCTCTCCATAGGGTAAGGTAA
GTTCCATGTTTAACTTTTCCAATTTCATAGGGTGATCCTTAGCACCCATTCTCTAAAGAAACAAC
CCGTTTTGAATCCATGGTGTTTGGTTGGGACAGATTTAAAAACTTCTCTCGTTTGGGGCGTTTTG
CCTTAGTCACAACCTCATTTTTAGGGTTTCGATCCATCCATCGGG
Found at i:1171360 original size:19 final size:19
Alignment explanation
Indices: 1171313--1171361 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
1171303 TTATACTCGC
*
1171313 CATATCTACGTGAGAATCA
1 CATATATACGTGAGAATCA
* * *
1171332 TATATCTACGTGAGAATCG
1 CATATATACGTGAGAATCA
*
1171351 CATCTATACGT
1 CATATATACGT
1171362 CCTTGCCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (19 bp):
CATATATACGTGAGAATCA
Left flanking sequence: Indices 1170813 -- 1171312
CTTTCCCCCTTCATCAGCTAGAGAGAAGGACCACTTCACCACTGGTCGAGAGGAGAAGGAAGTCC
ACCATTACACCCCGAAAAAGAAGAAAGAGACCAGTCTCCTAAGCTCTCCATAGGGTAAGGTAAGT
TCCATGTTTAACTTTTCCAATTTCATAGGGTGATCCTTAGCACCCATTCTCTAAAGAAACAACCC
GTTTTGAATCCATGGTGTTTGGTTGGGACAGATTTAAAAACTTCTCTCGTTTGGGGCGTTTTGCC
TTAGTCACAACCTCATTTTTAGGGTTTCGATCCATCCATCGGGGCACAGAAATGGATTTTCTTGT
TACTAAACTATACCCTTTTGGAACGTTTCTCTCTGGCCAGGATTCATTGGGGAGTTTGCATTGGT
TACAGGAGGTCGTCATTGCCGAGAGACGCAAGTAAGTGTGCCTGGGTTATTCGCTCCCGATTCCC
TAGTTTATGCCCCGATTACCTTGTTACTTTCCATGTTATACTCGC
Right flanking sequence: Indices 1171362 -- 1171861
CCTTGCCATTGTAAGAATTTGTAATCTATGCAACCTCACCTTTCACCTTTTGCCTTGAACCTTCG
ACAGATGCCAGGCCCAACGAGTACAACAGAGGAAGCAAGTAAACGCCTTTGAGCCGAAGAAGTGT
GAGAGAAGGTGAGCGGAAGATCCAGAGTTTAGTTAGAACAGAATCACTCGCATCTATACGTTTAA
CTTTTCCATTTTAACAAGAAAAAAATCCATCCCACAACCATCCATATCTAAGAAATCTCTACTAC
ATCTCTAGCTCTCCATGGGTTGAATAATGCGCCATTGAAAAAGAAAGAAAGAAATAAGAACTACT
TCTAAGAGCGAGAAGAAGCTTCTTATTGTCTCCTTTTCAAATAGGAGAAGACCTAGCTGGGAAAC
CTAACCTTATATGCACAATCCGAAGCCGAGAGGAAGGCTGAAGCCGATAGGAAGGAGAAGAAAAG
AAGTTACCCCATTGTTTAAACCAGAAGACATTGGTTGGAGTTTGG
Found at i:1174396 original size:13 final size:13
Alignment explanation
Indices: 1174378--1174403 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1174368 TCGGGCCATA
1174378 TTATACGCACGCT
1 TTATACGCACGCT
1174391 TTATACGCACGCT
1 TTATACGCACGCT
1174404 CTACTGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (13 bp):
TTATACGCACGCT
Left flanking sequence: Indices 1173878 -- 1174377
ATCTGTAATGGAGATCACATTGGTAGGGATATAGGCCGACACGTCTCCAGCTTTTGTTTCAATGA
CGGGTAACGCGGTCAAGCTACCCGCACCTGTCTGGTCCGATCGTTTAGCGGCTCTTTCTAATAGA
CGGGAATGTAACTTGTTCACCCGTGTCGGTTTGGGGTACGGTTAGTTCACCGGGAGGATCGCCCT
CCCAATTCGAAGTTGTTTCCTTGAAGTTGAAACCCTAAGTGCGCTTTCGCATTCATTCTATTTGG
TTTCCCCTATTTGATTTCAAGAACGGCTCTTGGCGTTGCAAAGAGGCTCGATCACTTCCTTTTCC
ACTAAGCGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCGACTCTGGATCTT
AGCACCCAAAGTCTGTCTGTACGATTGATTAAGCCTGTACTCTTTGTTTCGTTGGGGTTGGTCAA
GCTTTGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATA
Right flanking sequence: Indices 1174404 -- 1174803
CTACTGAAATAGATTTATAGAAAACCAGCTATATCCGATCCTCGACAAAAGGAGAGGAAGCGTCC
TTACTTATCAATGCCCGGGCATCCATTCTATACTGGTTTCTAATAAAACGAACACTACTAAGGAA
CGGTGACTTGCGCTATGGCCTAGGCGCTCCCCTTCGTGCTTTTCGCTATTATTGGACCAGAAATA
GATTCGAAGCCGATCCGTTTCATCATCGATTTCGCTTTAGCAGCTGCGCGTCTCCCTTTCTTTTA
TATCTCGATTCGGGCGGGTGACGCATCGCATATTCGAGATGACGCTCTTGCGATAAGAGTCAATT
CGTTTTATTTACGTAATTACGCAATCTTCAAATATCGAACGGTAAGCCAGATGCTTCGCGAACCA
ACCATATTCC
Done.