Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469769
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
File 3 of 7
Found at i:162546 original size:12 final size:12
Alignment explanation
Indices: 162479--162549 Score: 88
Period size: 12 Copynumber: 5.6 Consensus size: 12
162469 CCATATAGAG
*
162479 AGATAGAGATAT
1 AGATAGAGAGAT
*
162491 AGAGAGAGAGAT
1 AGATAGAGAGAT
162503 AGATAGAGATATAGAT
1 AGATAGAG----AGAT
162519 AGATAGAGAGAT
1 AGATAGAGAGAT
162531 AGATAGAGAGAT
1 AGATAGAGAGAT
162543 AGATAGA
1 AGATAGA
162550 TATAGAGAGG
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
12 40 0.77
16 12 0.23
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (12 bp):
AGATAGAGAGAT
Left flanking sequence: Indices 161979 -- 162478
GAGCAAAATGATGCCCCATATAGAACTATAGATAGGGCTCTAGTTTGGGAGCGAGATCTGTTTGG
ATCTGTTTGGTTGGTTGGTAATAGAAGAGGGGAAGAGGGGAAGAGGGGAAGAAGGCGGCTCGCTC
CAACCAACACTCTACCGTCCATAGAGCGGAATCCCCTGGGGTGTAGATAGACTAGAGGGGGCAAG
GGAGATGTGGGGATAGGGATTATAGTGCCACTGGAAGAAGGAACACCTGTGGGAACATCTCTACC
GACGAACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATGGAAATAATGGAAA
AGAAGAAGTTCTGCGGTTGGACCATCTGCTCTATTCGTTCCGACCGACGAGTCCAGATCGAATAG
GCTCTAAATCGAAAGGTGGGCCATATAGATATAGGGGGCCTCCCCCTCTCCGGCCGTCGGGCCTA
TCTAGATATAGGGGCCTCCCCCTCTCCCTCGGCCCCCATATAGAG
Right flanking sequence: Indices 162550 -- 163049
TATAGAGAGGGGGGGGCCATATCTATATAGGGGGGGGGGCCGAGTGCCCCATATCTAGATAGGCC
CCCCGATGGGGGGGCCTATCTAGATATAGGGCCCTCCATATCTCTATATAGGGGCGGGCCTCTAT
ATGGATAGGGGCCCTATCTAGATATGGGGGCCCCTATCTAGAGTTCGGGGTGGGGCCCCCATATC
TAGATAGGGCCCATATCTCTATATAGGCATCTAGATATAGAGGGAGCCCCATATCGTCATAGGGG
AGGCCCTGGGGCACTCGCAGCTAGATCTATATGGGTGCTTGGGCTATATACAGTCGGGATCGAGG
GTCCGAAGGACCCCCTAGAAACCCCTATCTCTCCCATATATATAGAGTAGAGGGGGGGGGCCCAG
ATAGAGATAGGGCCTCTCCCTCTCTATGGGTATGGGGGAGAGCGCCAATTGAACTCTATATACGA
CGCTCACTGCCGAGGTAGGGCCCCCATATAGAGTATATAGATAGG
Found at i:162546 original size:24 final size:24
Alignment explanation
Indices: 162479--162549 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 24
162469 CCATATAGAG
* *
162479 AGATAGAGATATAGAGAGAGAGAT
1 AGATAGAGAGATAGATAGAGAGAT
162503 AGATAGAGATATAGATAGATAGAGAGAT
1 AGATAGAG----AGATAGATAGAGAGAT
162531 AGATAGAGAGATAGATAGA
1 AGATAGAGAGATAGATAGA
162550 TATAGAGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
24 19 0.46
28 22 0.54
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (24 bp):
AGATAGAGAGATAGATAGAGAGAT
Left flanking sequence: Indices 161979 -- 162478
GAGCAAAATGATGCCCCATATAGAACTATAGATAGGGCTCTAGTTTGGGAGCGAGATCTGTTTGG
ATCTGTTTGGTTGGTTGGTAATAGAAGAGGGGAAGAGGGGAAGAGGGGAAGAAGGCGGCTCGCTC
CAACCAACACTCTACCGTCCATAGAGCGGAATCCCCTGGGGTGTAGATAGACTAGAGGGGGCAAG
GGAGATGTGGGGATAGGGATTATAGTGCCACTGGAAGAAGGAACACCTGTGGGAACATCTCTACC
GACGAACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATGGAAATAATGGAAA
AGAAGAAGTTCTGCGGTTGGACCATCTGCTCTATTCGTTCCGACCGACGAGTCCAGATCGAATAG
GCTCTAAATCGAAAGGTGGGCCATATAGATATAGGGGGCCTCCCCCTCTCCGGCCGTCGGGCCTA
TCTAGATATAGGGGCCTCCCCCTCTCCCTCGGCCCCCATATAGAG
Right flanking sequence: Indices 162550 -- 163049
TATAGAGAGGGGGGGGCCATATCTATATAGGGGGGGGGGCCGAGTGCCCCATATCTAGATAGGCC
CCCCGATGGGGGGGCCTATCTAGATATAGGGCCCTCCATATCTCTATATAGGGGCGGGCCTCTAT
ATGGATAGGGGCCCTATCTAGATATGGGGGCCCCTATCTAGAGTTCGGGGTGGGGCCCCCATATC
TAGATAGGGCCCATATCTCTATATAGGCATCTAGATATAGAGGGAGCCCCATATCGTCATAGGGG
AGGCCCTGGGGCACTCGCAGCTAGATCTATATGGGTGCTTGGGCTATATACAGTCGGGATCGAGG
GTCCGAAGGACCCCCTAGAAACCCCTATCTCTCCCATATATATAGAGTAGAGGGGGGGGGCCCAG
ATAGAGATAGGGCCTCTCCCTCTCTATGGGTATGGGGGAGAGCGCCAATTGAACTCTATATACGA
CGCTCACTGCCGAGGTAGGGCCCCCATATAGAGTATATAGATAGG
Found at i:162550 original size:28 final size:28
Alignment explanation
Indices: 162489--162557 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
162479 AGATAGAGAT
* *
162489 ATAGAGAGAGAGATAGATAGAGATATAG
1 ATAGATAGAGAGATAGATAGAGAGATAG
162517 ATAGATAGAGAGATAGATAGAGAGATAG
1 ATAGATAGAGAGATAGATAGAGAGATAG
*
162545 ATAGATATAGAGA
1 ATAGATAGAGAGA
162558 GGGGGGGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.51, C:0.00, G:0.30, T:0.19
Consensus pattern (28 bp):
ATAGATAGAGAGATAGATAGAGAGATAG
Left flanking sequence: Indices 161989 -- 162488
ATGCCCCATATAGAACTATAGATAGGGCTCTAGTTTGGGAGCGAGATCTGTTTGGATCTGTTTGG
TTGGTTGGTAATAGAAGAGGGGAAGAGGGGAAGAGGGGAAGAAGGCGGCTCGCTCCAACCAACAC
TCTACCGTCCATAGAGCGGAATCCCCTGGGGTGTAGATAGACTAGAGGGGGCAAGGGAGATGTGG
GGATAGGGATTATAGTGCCACTGGAAGAAGGAACACCTGTGGGAACATCTCTACCGACGAACCAT
TTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATGGAAATAATGGAAAAGAAGAAGTT
CTGCGGTTGGACCATCTGCTCTATTCGTTCCGACCGACGAGTCCAGATCGAATAGGCTCTAAATC
GAAAGGTGGGCCATATAGATATAGGGGGCCTCCCCCTCTCCGGCCGTCGGGCCTATCTAGATATA
GGGGCCTCCCCCTCTCCCTCGGCCCCCATATAGAGAGATAGAGAT
Right flanking sequence: Indices 162558 -- 163057
GGGGGGGGCCATATCTATATAGGGGGGGGGGCCGAGTGCCCCATATCTAGATAGGCCCCCCGATG
GGGGGGCCTATCTAGATATAGGGCCCTCCATATCTCTATATAGGGGCGGGCCTCTATATGGATAG
GGGCCCTATCTAGATATGGGGGCCCCTATCTAGAGTTCGGGGTGGGGCCCCCATATCTAGATAGG
GCCCATATCTCTATATAGGCATCTAGATATAGAGGGAGCCCCATATCGTCATAGGGGAGGCCCTG
GGGCACTCGCAGCTAGATCTATATGGGTGCTTGGGCTATATACAGTCGGGATCGAGGGTCCGAAG
GACCCCCTAGAAACCCCTATCTCTCCCATATATATAGAGTAGAGGGGGGGGGCCCAGATAGAGAT
AGGGCCTCTCCCTCTCTATGGGTATGGGGGAGAGCGCCAATTGAACTCTATATACGACGCTCACT
GCCGAGGTAGGGCCCCCATATAGAGTATATAGATAGGGCCCCCCC
Found at i:162551 original size:8 final size:8
Alignment explanation
Indices: 162473--162549 Score: 82
Period size: 8 Copynumber: 9.6 Consensus size: 8
162463 CGGCCCCCAT
162473 ATAGAGAG
1 ATAGAGAG
*
162481 ATAGAGAT
1 ATAGAGAG
162489 ATAGAGAG
1 ATAGAGAG
* *
162497 AGAGATAG
1 ATAGAGAG
*
162505 ATAGAGAT
1 ATAGAGAG
*
162513 ATAGATAG
1 ATAGAGAG
162521 ATAGAGAG
1 ATAGAGAG
*
162529 ATAGATAG
1 ATAGAGAG
* *
162537 AGAGATAG
1 ATAGAGAG
162545 ATAGA
1 ATAGA
162550 TATAGAGAGG
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 56 1.00
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (8 bp):
ATAGAGAG
Left flanking sequence: Indices 161973 -- 162472
AGAACGGAGCAAAATGATGCCCCATATAGAACTATAGATAGGGCTCTAGTTTGGGAGCGAGATCT
GTTTGGATCTGTTTGGTTGGTTGGTAATAGAAGAGGGGAAGAGGGGAAGAGGGGAAGAAGGCGGC
TCGCTCCAACCAACACTCTACCGTCCATAGAGCGGAATCCCCTGGGGTGTAGATAGACTAGAGGG
GGCAAGGGAGATGTGGGGATAGGGATTATAGTGCCACTGGAAGAAGGAACACCTGTGGGAACATC
TCTACCGACGAACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATGGAAATAA
TGGAAAAGAAGAAGTTCTGCGGTTGGACCATCTGCTCTATTCGTTCCGACCGACGAGTCCAGATC
GAATAGGCTCTAAATCGAAAGGTGGGCCATATAGATATAGGGGGCCTCCCCCTCTCCGGCCGTCG
GGCCTATCTAGATATAGGGGCCTCCCCCTCTCCCTCGGCCCCCAT
Right flanking sequence: Indices 162550 -- 163049
TATAGAGAGGGGGGGGCCATATCTATATAGGGGGGGGGGCCGAGTGCCCCATATCTAGATAGGCC
CCCCGATGGGGGGGCCTATCTAGATATAGGGCCCTCCATATCTCTATATAGGGGCGGGCCTCTAT
ATGGATAGGGGCCCTATCTAGATATGGGGGCCCCTATCTAGAGTTCGGGGTGGGGCCCCCATATC
TAGATAGGGCCCATATCTCTATATAGGCATCTAGATATAGAGGGAGCCCCATATCGTCATAGGGG
AGGCCCTGGGGCACTCGCAGCTAGATCTATATGGGTGCTTGGGCTATATACAGTCGGGATCGAGG
GTCCGAAGGACCCCCTAGAAACCCCTATCTCTCCCATATATATAGAGTAGAGGGGGGGGGCCCAG
ATAGAGATAGGGCCTCTCCCTCTCTATGGGTATGGGGGAGAGCGCCAATTGAACTCTATATACGA
CGCTCACTGCCGAGGTAGGGCCCCCATATAGAGTATATAGATAGG
Found at i:164763 original size:18 final size:17
Alignment explanation
Indices: 164736--164770 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
164726 GCGCCCCCCC
164736 CCCTCTCTATATATGGG
1 CCCTCTCTATATATGGG
164753 CCCTACTCTATATATGGG
1 CCCT-CTCTATATATGGG
164771 GGGGTCGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (17 bp):
CCCTCTCTATATATGGG
Left flanking sequence: Indices 164236 -- 164735
AGCACTCGACCACACCCCCACCTATTGATTGGGATTGGGTTGGGTGGGCGCCCAATCTATATAGT
ACAAACGGGGCTCCGACGCATCCGGCAGAGCAAAGCGCTCCATTCCCTTCCTTCTGCATTGGCGA
GTAGAGTGCCACAATCCCATTCATCATTTTGTATATACATGGGCCAAAGCCCATAGCACTGGCGA
CGTCCCCGGCATAAATGCAAGGGGGGTGTATAGCTAATACGGGATCTTGCGGAACGGGATTTGAT
TCTGCAGGCGATTCAGTACGAACGAATGAATTCCGAACAAAAGGATTGGAACTCGCCGATGGGGA
AAGAGGGGAAAACAGAGCAATGCCAACAGCTCCGCCATATATAGATAGGGGCCGCTGTTCGGCTC
TCTCTTCGGCATCTCGTGCCAAGTGCAATAAAAGAGTCGCCTTTTTCCCGGATAAAGCTCGCGAA
CCACCGGAGCCCCCGCGGTCAAGCAGCGGGCCCTGGCGCCCCCCC
Right flanking sequence: Indices 164771 -- 165270
GGGGTCGAGCAGCGCAGAAAGCCTGTTCAAAGCCCGGTTCCTTCCGGGGTGCGGGGCCGGGGTTC
GTGCCTGTTCGAAGAAGGTATATATATAGGGCTCAGCCCCGGGCGCCCTATATAGGCTCGATACG
AAAGAGCAAAAAGCAGTTTCCCGGCCTCGTTCTGATACATTATGGGGTTGGACCCGGTAACGAAA
GGGGAATCCGTAAAAACTTGGGATCCGACACCGTGGTGGAATACTACCCTCGTGATTAGACCATG
TCCCCGGGATTTGATAGGGCAAAGGTGCATTAGCATTGGAGTTGGTGAATACGTTGTAATTGGGA
GAGTTGGAAGGAGTATGACGGAACGAAAGACCAAGGAGAGAAAGAAGAGTGCACAAAAAGTGAGG
TGAAGCACCAAACGCAGGTGGTTGTTTCCTGTCGTAAGCGAATGCAACGGAAAGACCCGGAAGTA
ACGGATAATGGCACAACTCATTTACTGACGTTCTTCCGTGTTCAT
Found at i:167253 original size:4 final size:4
Alignment explanation
Indices: 167246--167324 Score: 86
Period size: 4 Copynumber: 19.8 Consensus size: 4
167236 GTGCTCCCTT
* * * *
167246 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TATC TCTA TCTA TATC TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
167294 TCTA TCTC TCTC TCTA TATC TCTA TCTA TCT
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCT
167325 CTCTCTATAT
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 61 1.00
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.51
Consensus pattern (4 bp):
TCTA
Left flanking sequence: Indices 166746 -- 167245
ATCAATGTTATTACATACGTAATATGATCGGATCGATTGCAGCCAGCCCAGCAAAGAGAATCTGG
GCCCAGATCTATTCTCTGGCGGCACGATCACATCACCACAGATAGGGTAGATAGGCCAACCCAAC
GAACAAGTCTATCGTCCAGTCTATCCATTGGACAAGTCTATCCAGTCTATAGATGAACCTCCATA
TAGAATAGATCTCTATTCTAAATATAGATCTATTCTATATGGATAGTCTATATTCTGTCATATAT
ATGTAGAGTATAGTACGATACAAACTCTAGATCTATCCAACTAACAGATCTATATTCTATAATAT
GAGATATTATAATACTATAGATGTGATACGAACTATAGATCTCAACTAGATCTCAACTAACCAAC
TCCCCCCTCCTCGATCTCTCGCCATAGAATATAGATTCTATATAGTGCAGATAGAGAACAGATAT
CTATATATAGGGGGCCCCCTATCTATATATGGTTGGTGCTCCCTT
Right flanking sequence: Indices 167325 -- 167824
CTCTCTATATGGCCCCTCGGGTATATATAGATAGATAGAAAGGGAGAGGGCCTTGATTCGCCATA
TGATATGGCGCCCATTCTCAATTATTCGGCTTGGCCCCTATAGAATCTATATAGGGGGTAGGGGG
GCCCGGCGATGGCCCCATCTAGAGAAATCTATATGGGCGGCCCTTCTCCTCTCTCCTTCGCCCAT
CCCGCAACCATCTCACCGGCATCACCCCTCTATATGGATCATCCGGCATCACGCATTGTCACCGG
CATCACCCATTCTCTATATAGATCATCCGGCCTCCCCTTCTCTCTATTCTATATATCTTATATCT
GTCCGCCTTCTCCCTTCTCCCCTTCTCTCTCTATTCTATCTTATCCGCGGACCCGTACGATCTTT
ACGATCTTCTGTCCCCTTCTGTCTCCATCACGAACTATGGATAGTTATCCGGCATCACTAGTGTG
AGTGAATGATCAAGATATGAGGGATTCTATAAGAGTCCCAGTTCA
Found at i:167263 original size:12 final size:12
Alignment explanation
Indices: 167246--167328 Score: 112
Period size: 12 Copynumber: 6.9 Consensus size: 12
167236 GTGCTCCCTT
*
167246 TCTATCTATCTA
1 TCTATCTCTCTA
*
167258 TCTATCTATCTA
1 TCTATCTCTCTA
*
167270 TCTATATCTCTA
1 TCTATCTCTCTA
*
167282 TCTATATCTCTA
1 TCTATCTCTCTA
*
167294 TCTATCTCTCTC
1 TCTATCTCTCTA
*
167306 TCTATATCTCTA
1 TCTATCTCTCTA
167318 TCTATCTCTCT
1 TCTATCTCTCT
167329 CTATATGGCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 64 1.00
ACGTcount: A:0.20, C:0.29, G:0.00, T:0.51
Consensus pattern (12 bp):
TCTATCTCTCTA
Left flanking sequence: Indices 166746 -- 167245
ATCAATGTTATTACATACGTAATATGATCGGATCGATTGCAGCCAGCCCAGCAAAGAGAATCTGG
GCCCAGATCTATTCTCTGGCGGCACGATCACATCACCACAGATAGGGTAGATAGGCCAACCCAAC
GAACAAGTCTATCGTCCAGTCTATCCATTGGACAAGTCTATCCAGTCTATAGATGAACCTCCATA
TAGAATAGATCTCTATTCTAAATATAGATCTATTCTATATGGATAGTCTATATTCTGTCATATAT
ATGTAGAGTATAGTACGATACAAACTCTAGATCTATCCAACTAACAGATCTATATTCTATAATAT
GAGATATTATAATACTATAGATGTGATACGAACTATAGATCTCAACTAGATCTCAACTAACCAAC
TCCCCCCTCCTCGATCTCTCGCCATAGAATATAGATTCTATATAGTGCAGATAGAGAACAGATAT
CTATATATAGGGGGCCCCCTATCTATATATGGTTGGTGCTCCCTT
Right flanking sequence: Indices 167329 -- 167828
CTATATGGCCCCTCGGGTATATATAGATAGATAGAAAGGGAGAGGGCCTTGATTCGCCATATGAT
ATGGCGCCCATTCTCAATTATTCGGCTTGGCCCCTATAGAATCTATATAGGGGGTAGGGGGGCCC
GGCGATGGCCCCATCTAGAGAAATCTATATGGGCGGCCCTTCTCCTCTCTCCTTCGCCCATCCCG
CAACCATCTCACCGGCATCACCCCTCTATATGGATCATCCGGCATCACGCATTGTCACCGGCATC
ACCCATTCTCTATATAGATCATCCGGCCTCCCCTTCTCTCTATTCTATATATCTTATATCTGTCC
GCCTTCTCCCTTCTCCCCTTCTCTCTCTATTCTATCTTATCCGCGGACCCGTACGATCTTTACGA
TCTTCTGTCCCCTTCTGTCTCCATCACGAACTATGGATAGTTATCCGGCATCACTAGTGTGAGTG
AATGATCAAGATATGAGGGATTCTATAAGAGTCCCAGTTCATGTC
Found at i:167283 original size:6 final size:6
Alignment explanation
Indices: 167266--167320 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
167256 TATCTATCTA
* * * * * *
167266 TCTATC TATATC TCTATC TATATC TCTATC TATCTC TCTCTC TATATC
1 TCTATC TCTATC TCTATC TCTATC TCTATC TCTATC TCTATC TCTATC
167314 TCTATC T
1 TCTATC T
167321 ATCTCTCTCT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.20, C:0.29, G:0.00, T:0.51
Consensus pattern (6 bp):
TCTATC
Left flanking sequence: Indices 166766 -- 167265
AATATGATCGGATCGATTGCAGCCAGCCCAGCAAAGAGAATCTGGGCCCAGATCTATTCTCTGGC
GGCACGATCACATCACCACAGATAGGGTAGATAGGCCAACCCAACGAACAAGTCTATCGTCCAGT
CTATCCATTGGACAAGTCTATCCAGTCTATAGATGAACCTCCATATAGAATAGATCTCTATTCTA
AATATAGATCTATTCTATATGGATAGTCTATATTCTGTCATATATATGTAGAGTATAGTACGATA
CAAACTCTAGATCTATCCAACTAACAGATCTATATTCTATAATATGAGATATTATAATACTATAG
ATGTGATACGAACTATAGATCTCAACTAGATCTCAACTAACCAACTCCCCCCTCCTCGATCTCTC
GCCATAGAATATAGATTCTATATAGTGCAGATAGAGAACAGATATCTATATATAGGGGGCCCCCT
ATCTATATATGGTTGGTGCTCCCTTTCTATCTATCTATCTATCTA
Right flanking sequence: Indices 167321 -- 167820
ATCTCTCTCTATATGGCCCCTCGGGTATATATAGATAGATAGAAAGGGAGAGGGCCTTGATTCGC
CATATGATATGGCGCCCATTCTCAATTATTCGGCTTGGCCCCTATAGAATCTATATAGGGGGTAG
GGGGGCCCGGCGATGGCCCCATCTAGAGAAATCTATATGGGCGGCCCTTCTCCTCTCTCCTTCGC
CCATCCCGCAACCATCTCACCGGCATCACCCCTCTATATGGATCATCCGGCATCACGCATTGTCA
CCGGCATCACCCATTCTCTATATAGATCATCCGGCCTCCCCTTCTCTCTATTCTATATATCTTAT
ATCTGTCCGCCTTCTCCCTTCTCCCCTTCTCTCTCTATTCTATCTTATCCGCGGACCCGTACGAT
CTTTACGATCTTCTGTCCCCTTCTGTCTCCATCACGAACTATGGATAGTTATCCGGCATCACTAG
TGTGAGTGAATGATCAAGATATGAGGGATTCTATAAGAGTCCCAG
Found at i:169267 original size:14 final size:14
Alignment explanation
Indices: 169248--169281 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
169238 TCTCTCTCGA
*
169248 CTCTCTATCTGTAT
1 CTCTCTATCTCTAT
*
169262 CTCTCTCTCTCTAT
1 CTCTCTATCTCTAT
169276 CTCTCT
1 CTCTCT
169282 CTATATCTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.09, C:0.38, G:0.03, T:0.50
Consensus pattern (14 bp):
CTCTCTATCTCTAT
Left flanking sequence: Indices 168748 -- 169247
TATGAACTATGGAGGGCCCTATCCATAGATATAGAGGGGGGGGCACCCGCCCTTGAAATCTATAG
GGATCCGTAGATCAATCCTCCCGGCATCAATCGAACCGTTACTAAATGTATACAGTCGCCTATAG
AGATCTAGGGGGCGCAGCCATCTATCTCCATCTCCCAGTCCCCATAGATAAGATATAGAGAGAGG
GGGGGGGGGGCGTTCCCCTAGAACTATATGGTCCAAATGACCCCGGCCAGGCCGGAAGGATAGGG
GCGCATGTACTGAATGACCTGCCTGCCAGATCTATAGGGGGCTATCTAGGGCAGGCTCCCTACCT
ATATACGCTCAGGGCTATGGATTGGATAGTCATTGGATAGTCGGCCAGGTTTGGGGGGAGAATAG
ACACAAGGAATGGATGCAGCCACCCTCCTATATAGAGTTCATCTATCTATATCTCTCTCGACTCT
ATCTGTATCTCTCGATCTCTCAGATAAGATATATATCTCTCTCGA
Right flanking sequence: Indices 169282 -- 169781
CTATATCTCGACGAGACTCTATCTGAACTCTGAAGTCTCTCTCTCTCTATCTCTCTCTCTATCTC
TATCTATATGGCAGAACCCTCTATATATAGATTCTCTATATGGCAGCTGGCCCCTATATATCTGT
ATATGGCCAGCCCCTCTATATCCCCTATATAGAGAAGGGGGTTCTCTCGGCTCATATATAGATAG
GGGGATCGAAGCCTCTCTATATGATATGGCAGCTGCGCTGGGATCGAAGCCTCTCTATATGATAT
GGCCGCTGGGGTCCGAAGCTGGGAGAGTCCCTCTATACTCTATATATGGGATGGGTTCTCTCGGC
CCATAGAGATATAGGGGGATAGTTCTCTATAGAGGGCTCTAGAGATATAGGACGCACTGGTCTAG
TTCTCTATATAGGGCACTCCCAACTCTATCTTATCTCGAGTTTAGTCTAGTCAGGGCGAATGGTC
AGATATCTATCTATATAGGGGCCCAAGATCTGGGATATGGCGAAT
Found at i:169278 original size:12 final size:12
Alignment explanation
Indices: 169234--169290 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
169224 AGATAAGATA
169234 TATATCTCTCTC
1 TATATCTCTCTC
* * * *
169246 GACTCTCTATCTG
1 TA-TATCTCTCTC
*
169259 TATCTCTCTCTC
1 TATATCTCTCTC
*
169271 TCTATCTCTCTC
1 TATATCTCTCTC
169283 TATATCTC
1 TATATCTC
169291 GACGAGACTC
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
12 26 0.76
13 8 0.24
ACGTcount: A:0.14, C:0.35, G:0.04, T:0.47
Consensus pattern (12 bp):
TATATCTCTCTC
Left flanking sequence: Indices 168734 -- 169233
GATTAATACAGAATTATGAACTATGGAGGGCCCTATCCATAGATATAGAGGGGGGGGCACCCGCC
CTTGAAATCTATAGGGATCCGTAGATCAATCCTCCCGGCATCAATCGAACCGTTACTAAATGTAT
ACAGTCGCCTATAGAGATCTAGGGGGCGCAGCCATCTATCTCCATCTCCCAGTCCCCATAGATAA
GATATAGAGAGAGGGGGGGGGGGGCGTTCCCCTAGAACTATATGGTCCAAATGACCCCGGCCAGG
CCGGAAGGATAGGGGCGCATGTACTGAATGACCTGCCTGCCAGATCTATAGGGGGCTATCTAGGG
CAGGCTCCCTACCTATATACGCTCAGGGCTATGGATTGGATAGTCATTGGATAGTCGGCCAGGTT
TGGGGGGAGAATAGACACAAGGAATGGATGCAGCCACCCTCCTATATAGAGTTCATCTATCTATA
TCTCTCTCGACTCTATCTGTATCTCTCGATCTCTCAGATAAGATA
Right flanking sequence: Indices 169291 -- 169790
GACGAGACTCTATCTGAACTCTGAAGTCTCTCTCTCTCTATCTCTCTCTCTATCTCTATCTATAT
GGCAGAACCCTCTATATATAGATTCTCTATATGGCAGCTGGCCCCTATATATCTGTATATGGCCA
GCCCCTCTATATCCCCTATATAGAGAAGGGGGTTCTCTCGGCTCATATATAGATAGGGGGATCGA
AGCCTCTCTATATGATATGGCAGCTGCGCTGGGATCGAAGCCTCTCTATATGATATGGCCGCTGG
GGTCCGAAGCTGGGAGAGTCCCTCTATACTCTATATATGGGATGGGTTCTCTCGGCCCATAGAGA
TATAGGGGGATAGTTCTCTATAGAGGGCTCTAGAGATATAGGACGCACTGGTCTAGTTCTCTATA
TAGGGCACTCCCAACTCTATCTTATCTCGAGTTTAGTCTAGTCAGGGCGAATGGTCAGATATCTA
TCTATATAGGGGCCCAAGATCTGGGATATGGCGAATGGTCAGATA
Found at i:169336 original size:12 final size:12
Alignment explanation
Indices: 169319--169347 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
169309 CTCTGAAGTC
169319 TCTCTCTCTCTA
1 TCTCTCTCTCTA
169331 TCTCTCTCTCTA
1 TCTCTCTCTCTA
169343 TCTCT
1 TCTCT
169348 ATCTATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.41, G:0.00, T:0.52
Consensus pattern (12 bp):
TCTCTCTCTCTA
Left flanking sequence: Indices 168819 -- 169318
GTAGATCAATCCTCCCGGCATCAATCGAACCGTTACTAAATGTATACAGTCGCCTATAGAGATCT
AGGGGGCGCAGCCATCTATCTCCATCTCCCAGTCCCCATAGATAAGATATAGAGAGAGGGGGGGG
GGGGCGTTCCCCTAGAACTATATGGTCCAAATGACCCCGGCCAGGCCGGAAGGATAGGGGCGCAT
GTACTGAATGACCTGCCTGCCAGATCTATAGGGGGCTATCTAGGGCAGGCTCCCTACCTATATAC
GCTCAGGGCTATGGATTGGATAGTCATTGGATAGTCGGCCAGGTTTGGGGGGAGAATAGACACAA
GGAATGGATGCAGCCACCCTCCTATATAGAGTTCATCTATCTATATCTCTCTCGACTCTATCTGT
ATCTCTCGATCTCTCAGATAAGATATATATCTCTCTCGACTCTCTATCTGTATCTCTCTCTCTCT
ATCTCTCTCTATATCTCGACGAGACTCTATCTGAACTCTGAAGTC
Right flanking sequence: Indices 169348 -- 169847
ATCTATATGGCAGAACCCTCTATATATAGATTCTCTATATGGCAGCTGGCCCCTATATATCTGTA
TATGGCCAGCCCCTCTATATCCCCTATATAGAGAAGGGGGTTCTCTCGGCTCATATATAGATAGG
GGGATCGAAGCCTCTCTATATGATATGGCAGCTGCGCTGGGATCGAAGCCTCTCTATATGATATG
GCCGCTGGGGTCCGAAGCTGGGAGAGTCCCTCTATACTCTATATATGGGATGGGTTCTCTCGGCC
CATAGAGATATAGGGGGATAGTTCTCTATAGAGGGCTCTAGAGATATAGGACGCACTGGTCTAGT
TCTCTATATAGGGCACTCCCAACTCTATCTTATCTCGAGTTTAGTCTAGTCAGGGCGAATGGTCA
GATATCTATCTATATAGGGGCCCAAGATCTGGGATATGGCGAATGGTCAGATATCTATCTATATA
GGGGCGTTCTTAGCTCACAGAGTTCTTAGCTCACAAAGTTCGGTT
Found at i:169829 original size:16 final size:16
Alignment explanation
Indices: 169808--169843 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
169798 ATATAGGGGC
*
169808 GTTCTTAGCTCACAGA
1 GTTCTTAGCTCACAAA
169824 GTTCTTAGCTCACAAA
1 GTTCTTAGCTCACAAA
169840 GTTC
1 GTTC
169844 GGTTCCTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (16 bp):
GTTCTTAGCTCACAAA
Left flanking sequence: Indices 169308 -- 169807
ACTCTGAAGTCTCTCTCTCTCTATCTCTCTCTCTATCTCTATCTATATGGCAGAACCCTCTATAT
ATAGATTCTCTATATGGCAGCTGGCCCCTATATATCTGTATATGGCCAGCCCCTCTATATCCCCT
ATATAGAGAAGGGGGTTCTCTCGGCTCATATATAGATAGGGGGATCGAAGCCTCTCTATATGATA
TGGCAGCTGCGCTGGGATCGAAGCCTCTCTATATGATATGGCCGCTGGGGTCCGAAGCTGGGAGA
GTCCCTCTATACTCTATATATGGGATGGGTTCTCTCGGCCCATAGAGATATAGGGGGATAGTTCT
CTATAGAGGGCTCTAGAGATATAGGACGCACTGGTCTAGTTCTCTATATAGGGCACTCCCAACTC
TATCTTATCTCGAGTTTAGTCTAGTCAGGGCGAATGGTCAGATATCTATCTATATAGGGGCCCAA
GATCTGGGATATGGCGAATGGTCAGATATCTATCTATATAGGGGC
Right flanking sequence: Indices 169844 -- 170343
GGTTCCTAAGATATCTATATAGGGGCGGTTCTATAATCAGGCAGATGGCTAGTCCCCTATCTATA
TAGACTCCCCCTCCCCTCATATATATAGGGCCCATATAGATAGCCAGATATAGATAGGGGGGGGG
CCATCTATCTATGCCGCGGACCGCTGATAGATAGGAGCGGAACGGTTCTCTTCTCTCCATCTGGG
GACTCCATCTGTTCTCTCCATCTGGGCCCCTCTCTATCTATATGCCGACCATCTATAGTTCTGCT
GATAGATAGGAGCGGGGGTGGGGAGTTCTCTCCATCGGCCCATATCTAGACGGCAGATAGGGGTC
CCCAGATAGCCAGATGGATCTATATATATAGTAAGTACGGAAGCCGATTCCCCTATCTATAGATC
CTGTCAGATCGCCCATATATATGGATAGATAGGGCCACAAATCCCCTATCGGCCCCTAACCACAA
GATCAACCTAATATCGTCCCCCTCTATCTATATGGCGCCCCCCCT
Found at i:170743 original size:12 final size:12
Alignment explanation
Indices: 170726--170767 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
170716 CTATATAGAG
*
170726 ATATCTCTTTCT
1 ATATCTCTCTCT
170738 ATATCTCTCTCT
1 ATATCTCTCTCT
170750 ATATCTCTCTCT
1 ATATCTCTCTCT
170762 ATATCT
1 ATATCT
170768 ATATCTCGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (12 bp):
ATATCTCTCTCT
Left flanking sequence: Indices 170226 -- 170725
TATAGATCCTGTCAGATCGCCCATATATATGGATAGATAGGGCCACAAATCCCCTATCGGCCCCT
AACCACAAGATCAACCTAATATCGTCCCCCTCTATCTATATGGCGCCCCCCCTTGAAATTTCGAG
GGGCACGTGAACCGGGGAAGCTCGCCTTAGCTTGGAACCCTCGGGTCGGGGCCTATCTAGTTATA
GTTCAACCCCCTACCACCCCAACCCGCCCCAATAGTATATACGGGTAGGAATGAAACCCCGCCCC
GAGGCCTACAGGAACATAGCCGCAAGGTCGCCCCTCCCCCTATGACGATATGATATGGTTGCGAC
GCCTACAGTTGTTATTAGGTTGTTGGATAGAGGGAAGACTTGTCCTCCTCCGCCCCATATATCTA
GAGGGGGTCGGGGGAGTGCGGACTGACTATAGACTAGACTAAAAGATAGGCGCCGCCCCTATCTA
GAATTCTGAACTATGGAAGGGGGGGGCCCATATATCTATATAGAG
Right flanking sequence: Indices 170768 -- 171267
ATATCTCGTTCAGGGCCCAGCTAGCTATATAGAATAGAGAGATCTATATATATCTATATATAGAG
TAGGCCGTCGGTTCCTCTCTCTCTAAGCTATATAGAGTAGGCCCCCCCCCATCTCATCTATATAT
GGGTAGGCCGTCGGTCCCCTATCTGTATCGCCCCATCTAGATAGAGGGGCCCCATGGGCCCAATC
CCATCTAGTTAGAGTTAGATCCGGGGTCCCCTATATCCCCTATCTATATATGGGTTCGCCGGGGG
GGCTCACCCCAACTAAAACTATAGCCGCCCCCATCCCATATATAGATAGGGATAGGGGCCGACGG
GACGGCCTGTCGCCATATCTACAATCTAGAATCTATTAATATATATATAGGGGTGGGGGGGGGGG
TGCCTCGATCTCTATCTATATCTGGGGGGCCCATCCCATCTAGAATCTATATAGATGAGATAGAG
GGGGTCGAGCTACACTGCACCGGATGCATCCGTCTACCATCTATT
Found at i:173187 original size:11 final size:12
Alignment explanation
Indices: 173165--173189 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
173155 CCCTCCTCGA
173165 CCCAACCCCCCC
1 CCCAACCCCCCC
173177 CCCAACCCCCCC
1 CCCAACCCCCCC
173189 C
1 C
173190 TACCCTATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.84, G:0.00, T:0.00
Consensus pattern (12 bp):
CCCAACCCCCCC
Left flanking sequence: Indices 172665 -- 173164
CGGCCCTATCTAGAATTCTGAACTATGGAGGGGGGGGGCCTATCTATATCCATGCCCTCGGCCAC
CCCCAGATATAGATAGGGCCCCCCTATATAGATTCTAGATGGGGGCCCGGGGGCCGAGTGCTATA
TCTATATATAGCCATAGAGCCCTCGTCCTGAAGTCGGTCGAGTCCCTCGACCCCAACCCAACTCC
ATCCAATCTAGAGAGACCTGGGATCTGGGCGCCTACTCTATATATAGGGGAGCCCCCACCCCCAG
TAGGCCGTCGGGCCATATAGTTCTAGGGGCCTCGACCCCTTCTATAGATGAGATATGGGGTCGAG
TGCCCCGTAGATAGATAGGGGCCCGCCGGGGCGGGAGAGTGCCTCCCCCTCGACCCCAACCCAAC
TCCATCCAATCTAGAGAGACCTGGGATCTGGGCGCCATAGATTCTCTAGGGGAGCATAAATGCCC
CCGTATAGAGAGTAGGCCGTCGGGAGAGTCCCTCCCCCTCCTCGA
Right flanking sequence: Indices 173190 -- 173689
TACCCTATAGCTATAGGCGGGCGGCCTATAGGGTAGGGGCGCACGCAGAAATGACTCGATAGATA
GGGGCGGGGGAGTGCCCCCCCATATAGAGAGGGGCCCTCGACCTCCAGATATAGCCCCTCTAAAT
TGAAAGGGGGGGCGCCATATTTACTATATAGGGGGGGGTGCCCCCACCCCTTCCTATCTTATCTT
AGAGTTCTAGATAGGGGCCCTCTCGTCGCCATATAGATATATATAGGGGAGCATGCTATAGTCCC
CTAAAGGCCCTAACGTCAGTCGCCCTTGAAATTAAAAAAAATTAGAGGGGCCATATCCATATAGG
GGAGGGGGCCCTCAACCTATCGGTTGAGCGGATCGCTCACACCTCGACGAGTACTCTCCTCCCCC
CCCCCCCCCCCCCGCCTCTATATAGCTGTCCGGCTATAGAGAGTAGGCCGCCCGTAGATCTAGAG
CGGAGTGCCGACTCTATATAGCCTAGCCGTCGGGAGAGGGCGGCT
Found at i:173923 original size:33 final size:32
Alignment explanation
Indices: 173886--173977 Score: 130
Period size: 33 Copynumber: 2.8 Consensus size: 32
173876 GCCCATGCAT
173886 GCCCATATAGATCTATATAGGGCGGGCGCGGGC
1 GCCCATATAGATCTATATAGGG-GGGCGCGGGC
*
173919 GCCCATAGAGATCTATATAGGGGGGCGCGGGC
1 GCCCATATAGATCTATATAGGGGGGCGCGGGC
* *
173951 GCCCATATATAGATCTCTATGGGGGGG
1 GCCC--ATATAGATCTATATAGGGGGG
173978 GGTGGAGTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 14 0.26
33 21 0.40
34 18 0.34
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.20
Consensus pattern (32 bp):
GCCCATATAGATCTATATAGGGGGGCGCGGGC
Left flanking sequence: Indices 173386 -- 173885
GAGTTCTAGATAGGGGCCCTCTCGTCGCCATATAGATATATATAGGGGAGCATGCTATAGTCCCC
TAAAGGCCCTAACGTCAGTCGCCCTTGAAATTAAAAAAAATTAGAGGGGCCATATCCATATAGGG
GAGGGGGCCCTCAACCTATCGGTTGAGCGGATCGCTCACACCTCGACGAGTACTCTCCTCCCCCC
CCCCCCCCCCCCGCCTCTATATAGCTGTCCGGCTATAGAGAGTAGGCCGCCCGTAGATCTAGAGC
GGAGTGCCGACTCTATATAGCCTAGCCGTCGGGAGAGGGCGGCTATAGACTATAGACTATATAGA
ATAGGCGACCCGTTGGTCGAGTCCTGTCCTCGACCTCTCCCGTCCTTCTCCCGGGTTCTTTCATT
GATAAGAGTAGAGTGAAGAATCGTTGGTTTCACCGGCGAACTGCGTGGGCATGAGCTACGCCCAT
ATATAGATTAGATAGATAGAGAGGGGGGCGCGGGCGCCCATGCAT
Right flanking sequence: Indices 173978 -- 174477
GGTGGAGTTGTGAATGAGTGCGAGGAAGCTCCTCGTGCTTGTGAGCCGCCCGTTTCCCTGTGCGA
GAACCCATTTCATTTCCATAGCTAGCTCAGAGGCCCGACGGCCTACTCTAGAGAGCTCCCTAGAG
TTCTATATGGCACCGCCCTATCGGGCCGATTCTATTCTAGATATGGCGACCCCCCTCTCTCTATA
TGGGAGTGAGCGATAGTCTATATGTATATAGATATATATAGTTTAATTGGCGCTCTCCCTGTCAT
GCCCTGTCATTTTCTTTCGACCACACCGACTCTCTATAGTTGTAAATGAGTCAGGGCACACTACC
ATAAGGCACTTACTCGACTGAGGGCACTCACTCGACTGAGGGCACTCGTCCGACACTACCATTAT
CATAAGGCACTCACTCGACTGCCATAATACATAATGCACTCGCATCGCACTCCTTCCCCCGTGCC
GACAAGACCCCCCCTCCTAGACTCTATATCTCATCTATCTGGGTC
Found at i:174356 original size:18 final size:18
Alignment explanation
Indices: 174307--174349 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
174297 ACTACCATAA
*
174307 GGCACTTACTCGACTGAG
1 GGCACTCACTCGACTGAG
174325 GGCACTCACTCGACTGAG
1 GGCACTCACTCGACTGAG
174343 GGCACTC
1 GGCACTC
174350 GTCCGACACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (18 bp):
GGCACTCACTCGACTGAG
Left flanking sequence: Indices 173807 -- 174306
ACCGGCGAACTGCGTGGGCATGAGCTACGCCCATATATAGATTAGATAGATAGAGAGGGGGGCGC
GGGCGCCCATGCATGCCCATATAGATCTATATAGGGCGGGCGCGGGCGCCCATAGAGATCTATAT
AGGGGGGCGCGGGCGCCCATATATAGATCTCTATGGGGGGGGGTGGAGTTGTGAATGAGTGCGAG
GAAGCTCCTCGTGCTTGTGAGCCGCCCGTTTCCCTGTGCGAGAACCCATTTCATTTCCATAGCTA
GCTCAGAGGCCCGACGGCCTACTCTAGAGAGCTCCCTAGAGTTCTATATGGCACCGCCCTATCGG
GCCGATTCTATTCTAGATATGGCGACCCCCCTCTCTCTATATGGGAGTGAGCGATAGTCTATATG
TATATAGATATATATAGTTTAATTGGCGCTCTCCCTGTCATGCCCTGTCATTTTCTTTCGACCAC
ACCGACTCTCTATAGTTGTAAATGAGTCAGGGCACACTACCATAA
Right flanking sequence: Indices 174350 -- 174849
GTCCGACACTACCATTATCATAAGGCACTCACTCGACTGCCATAATACATAATGCACTCGCATCG
CACTCCTTCCCCCGTGCCGACAAGACCCCCCCTCCTAGACTCTATATCTCATCTATCTGGGTCCC
CCCGCGCATCTATCTATAGGGGGGCCCCTCCCCCTATAGATAGATGGCTATGGGGCCGGGGAGAA
TTCTATACAGCTATCTATATAGAGGCGGGGGGGCTACTATATAGATAGGGTATATAGATAGATAG
GGCGCCGCCATCTATAGTTATCATATAGAGAGAGTGGGGGCGAGTAGAGAGGCCCCCAGAGAATA
TATACCGACGGGACTCTCTATCTATATGCTATGCTCGGGAGGATCTATAGAGAACTGGGGCATAT
ATAGATAGGCCTCCAGAGAGCCAGATCTATAGAGAGGGGGCCCCCTCTCTATATATTCTATGGGC
CCCCCTCTCTATATATGGGCTAGAGAGGGGGCCGGGCGGGCGGGG
Found at i:175691 original size:16 final size:16
Alignment explanation
Indices: 175670--175704 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
175660 CCTACGTGCC
175670 CCCTAACTCAAACTGG
1 CCCTAACTCAAACTGG
175686 CCCTAACTCAAACTGG
1 CCCTAACTCAAACTGG
175702 CCC
1 CCC
175705 GATCATTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.43, G:0.11, T:0.17
Consensus pattern (16 bp):
CCCTAACTCAAACTGG
Left flanking sequence: Indices 175170 -- 175669
AGAGCAACTCGACCAACGGCCTTTGGACTAGACCATCACCATCTCATCTATAGTCAGTCTAGTCG
GCACCCCCCTCCCCCCCTATATAGATTAGATATATGGCGCCCCATAGATAGAGAGGGCCGGGTCG
ATCACGATCAGCGACTCTCTAGACTACTCCCCTCTCTCTATCCATATGGGGCAGGGGCCCAGTCC
ATTCATGCCCCTCCTCCCCCAGCCCCTCTATCTATATGGAGCAGAGTAGGCGGGCCCGAGGGCCG
GGTCGATCACGATCAGCGACTCTCTAGACTACTCTAGGCTAGACTACTCTACTCTAATCAGGGTC
CATTCATGCCCAGATGAGATGGCCCAGATGGTAGATGATATCGCAGTTGACTCGGAAGTTGGTTG
AGTGGGTCGGCATGTGAAGGCAGGCGGCCCGCCCGCCCGCCCCTATATAGGTATTGGGCCTCCCC
GGCCGCGCCTATCGCCTCCGATCGTCCCTCAACCTCCTACGTGCC
Right flanking sequence: Indices 175705 -- 176204
GATCATTCATTTCGTTTTCTTTTCCGCGGGCCGTTCTTAGGTTCTTTCTCTCCGTTGGGCGCTGT
TTTTAGCGGTAGCGTCTCGTTCAGCGGACGCGTTCGGGCAGTTGTTCTTTTCAGCGGAAGCGGAC
GCGTTCTTTCGTTTAGTTTCCATTCTTGCATCTTGATACCACCGAGCCCTTCTCGGATCGGTTCT
ACGGGAAAAGCTTTTTCCGTATCGGGGACGAATTTCTCAATCACTGAGGAGTGAAAACCTGTGAC
TATATCGTCCCGAAGACGGATGCGACGGGAAGAAATGGCGTCTGGAGGTGTTGCTGACTCCACAT
TTGGGTTTCGGCATGACACAGCTTGCACTGTCCTTTCGCACTTAGGCGCACAGCGTGCCGTCTCA
TTCGGTAGTGATTCTACAATTTCCGGCGTAATTGAACGCAAGCTGATCCTGAGTAATTGCTGTCG
TTCCTTGGATTCCGGAGACACCACTTCGTTAGGATTGAGGAATTG
Found at i:179204 original size:28 final size:28
Alignment explanation
Indices: 179165--179218 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
179155 ACTCTATATC
179165 TCTCTCAGATAAGATATATATCTCTCGA
1 TCTCTCAGATAAGATATATATCTCTCGA
179193 TCTCTCAGATAAGATATATATCTCTC
1 TCTCTCAGATAAGATATATATCTCTC
179219 TCGACTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.37
Consensus pattern (28 bp):
TCTCTCAGATAAGATATATATCTCTCGA
Left flanking sequence: Indices 178665 -- 179164
CCCCATTGCTGGAAAGGCTCGGCTTCAGAACCGTACGTGAAGCTTCCGCCTCATACGGCTCCTCT
CGGGATCGGAGATATTCGTTGGCTCCGGGAGACTCTATATATCATACATATAGCCGGAGATATAT
CTAAATAGTGGGGCAGATACTAGAAACCTAAACCTATATTCCATTTCTTAGAAACCCATATCGGC
AAACTAAACTTATAGACCATGGTGTCTACCAATCCAATCTTCCAAACCCCAAACCTAACTCTCTA
ATAGACTTGTTGATTCGGGGCCGGGGTGACTATATCTAGCCATAGCCCGGCCCCATATATTCTAT
ACTATAGATAGGCGCCGAGGACCCCTGGCCAACGGCCCAACTGGCGGGCACCAGAGATATGGCGA
CCCTATCTATCCCATATAGATAGAGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATATGGCATG
GCAGTTGGGGGAGTCGGCGCCCTATCTATATCTGAACTCTATATC
Right flanking sequence: Indices 179219 -- 179718
TCGACTCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTATATCTCTCTCTATAT
CTGAACTCTGAATGAGACTATCTGAATGAGACTATCTCTATCTCTCTCTATCTCTATCTCTCTCT
ATCTCTCTCTATATCTCACTCTGAACTCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCT
CAGATATATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCT
CTCTCTATCTATATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCT
CGGGCCATCTATCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCT
ACCTATCTATATATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCT
ATGGAGGGGGGGGGCGAGGGAATATATCCCATCGGGCTCTCGGCA
Found at i:179219 original size:30 final size:29
Alignment explanation
Indices: 179164--179229 Score: 107
Period size: 28 Copynumber: 2.2 Consensus size: 29
179154 AACTCTATAT
179164 CTCTCTCAGATAAGATATATATCTCTCGA
1 CTCTCTCAGATAAGATATATATCTCTCGA
179193 -TCTCTCAGATAAGATATATATCTCTCTCGA
1 CTCTCTCAGATAAGATATATA--TCTCTCGA
179223 CTCTCTC
1 CTCTCTC
179230 TGTATCTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
28 20 0.59
30 8 0.24
31 6 0.18
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.36
Consensus pattern (29 bp):
CTCTCTCAGATAAGATATATATCTCTCGA
Left flanking sequence: Indices 178664 -- 179163
GCCCCATTGCTGGAAAGGCTCGGCTTCAGAACCGTACGTGAAGCTTCCGCCTCATACGGCTCCTC
TCGGGATCGGAGATATTCGTTGGCTCCGGGAGACTCTATATATCATACATATAGCCGGAGATATA
TCTAAATAGTGGGGCAGATACTAGAAACCTAAACCTATATTCCATTTCTTAGAAACCCATATCGG
CAAACTAAACTTATAGACCATGGTGTCTACCAATCCAATCTTCCAAACCCCAAACCTAACTCTCT
AATAGACTTGTTGATTCGGGGCCGGGGTGACTATATCTAGCCATAGCCCGGCCCCATATATTCTA
TACTATAGATAGGCGCCGAGGACCCCTGGCCAACGGCCCAACTGGCGGGCACCAGAGATATGGCG
ACCCTATCTATCCCATATAGATAGAGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATATGGCAT
GGCAGTTGGGGGAGTCGGCGCCCTATCTATATCTGAACTCTATAT
Right flanking sequence: Indices 179230 -- 179729
TGTATCTCTCTCAGATATATATATATATATATCTCTCTATATCTCTCTCTATATCTGAACTCTGA
ATGAGACTATCTGAATGAGACTATCTCTATCTCTCTCTATCTCTATCTCTCTCTATCTCTCTCTA
TATCTCACTCTGAACTCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCTCAGATATATAT
CTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCTCTCTCTATCTA
TATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCCATCTA
TCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTACCTATCTATA
TATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTATGGAGGGGGG
GGGCGAGGGAATATATCCCATCGGGCTCTCGGCACGAGAGATAGA
Found at i:179284 original size:12 final size:12
Alignment explanation
Indices: 179223--179285 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
179213 TCTCTCTCGA
*
179223 CTCTCTCTGTAT
1 CTCTCTCTATAT
*
179235 CTCTCTCAGATAT
1 CTCTCTC-TATAT
* * * *
179248 ATATATATATAT
1 CTCTCTCTATAT
*
179260 ATCTCTCTATAT
1 CTCTCTCTATAT
179272 CTCTCTCTATAT
1 CTCTCTCTATAT
179284 CT
1 CT
179286 GAACTCTGAA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
12 33 0.85
13 6 0.15
ACGTcount: A:0.24, C:0.25, G:0.03, T:0.48
Consensus pattern (12 bp):
CTCTCTCTATAT
Left flanking sequence: Indices 178723 -- 179222
CTCCTCTCGGGATCGGAGATATTCGTTGGCTCCGGGAGACTCTATATATCATACATATAGCCGGA
GATATATCTAAATAGTGGGGCAGATACTAGAAACCTAAACCTATATTCCATTTCTTAGAAACCCA
TATCGGCAAACTAAACTTATAGACCATGGTGTCTACCAATCCAATCTTCCAAACCCCAAACCTAA
CTCTCTAATAGACTTGTTGATTCGGGGCCGGGGTGACTATATCTAGCCATAGCCCGGCCCCATAT
ATTCTATACTATAGATAGGCGCCGAGGACCCCTGGCCAACGGCCCAACTGGCGGGCACCAGAGAT
ATGGCGACCCTATCTATCCCATATAGATAGAGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATA
TGGCATGGCAGTTGGGGGAGTCGGCGCCCTATCTATATCTGAACTCTATATCTCTCTCAGATAAG
ATATATATCTCTCGATCTCTCAGATAAGATATATATCTCTCTCGA
Right flanking sequence: Indices 179286 -- 179785
GAACTCTGAATGAGACTATCTGAATGAGACTATCTCTATCTCTCTCTATCTCTATCTCTCTCTAT
CTCTCTCTATATCTCACTCTGAACTCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCTCA
GATATATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCTCT
CTCTATCTATATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCG
GGCCATCTATCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTAC
CTATCTATATATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTAT
GGAGGGGGGGGGCGAGGGAATATATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACGG
GAGCTATACATAGAATAGCCTGCCCGGGGCGCCATATATCTATAT
Found at i:179309 original size:14 final size:14
Alignment explanation
Indices: 179290--179320 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
179280 ATATCTGAAC
179290 TCTGAATGAGACTA
1 TCTGAATGAGACTA
179304 TCTGAATGAGACTA
1 TCTGAATGAGACTA
179318 TCT
1 TCT
179321 CTATCTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (14 bp):
TCTGAATGAGACTA
Left flanking sequence: Indices 178790 -- 179289
TATATCTAAATAGTGGGGCAGATACTAGAAACCTAAACCTATATTCCATTTCTTAGAAACCCATA
TCGGCAAACTAAACTTATAGACCATGGTGTCTACCAATCCAATCTTCCAAACCCCAAACCTAACT
CTCTAATAGACTTGTTGATTCGGGGCCGGGGTGACTATATCTAGCCATAGCCCGGCCCCATATAT
TCTATACTATAGATAGGCGCCGAGGACCCCTGGCCAACGGCCCAACTGGCGGGCACCAGAGATAT
GGCGACCCTATCTATCCCATATAGATAGAGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATATG
GCATGGCAGTTGGGGGAGTCGGCGCCCTATCTATATCTGAACTCTATATCTCTCTCAGATAAGAT
ATATATCTCTCGATCTCTCAGATAAGATATATATCTCTCTCGACTCTCTCTGTATCTCTCTCAGA
TATATATATATATATATCTCTCTATATCTCTCTCTATATCTGAAC
Right flanking sequence: Indices 179321 -- 179820
CTATCTCTCTCTATCTCTATCTCTCTCTATCTCTCTCTATATCTCACTCTGAACTCTGTATCTCT
CTCTCTCTATCTCTCTCTATATCTCTCTCAGATATATATCTCTCTCTATATCTCGACGAGACTCT
ATCTTCAGTCTCTTCTCTCTCTATCTCTCTCTCTATCTATATCTCTCTCTATGGCGCCCGCCCAC
CCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCCATCTATCTATATAGCCCTCTCCCCTATCTAG
ACTCTATATTGGGGTGGGGGCACCCCCTACCTATCTATATATGATATGGGGGCCCCATAGAGAAG
ATAGAATAGGGAGGCTCCCCTCTATTCTATGGAGGGGGGGGGCGAGGGAATATATCCCATCGGGC
TCTCGGCACGAGAGATAGATATGGCGACGGGAGCTATACATAGAATAGCCTGCCCGGGGCGCCAT
ATATCTATATAGGCGGGCGTCCATCCATTCTCCATTATATACGTG
Found at i:179333 original size:10 final size:10
Alignment explanation
Indices: 179318--179413 Score: 74
Period size: 10 Copynumber: 9.5 Consensus size: 10
179308 AATGAGACTA
179318 TCTCTATCTC
1 TCTCTATCTC
179328 TCTCTA----
1 TCTCTATCTC
179334 TCTCTATCTC
1 TCTCTATCTC
179344 TCTCTATCTC
1 TCTCTATCTC
179354 TCTCTATATCTC
1 TCTC--TATCTC
* *
179366 ACTCTGAACTCTG
1 TCTCT--A-TCTC
* *
179379 TATCTCTCTC
1 TCTCTATCTC
179389 TCTCTATCTC
1 TCTCTATCTC
*
179399 TCTCTATATC
1 TCTCTATCTC
179409 TCTCT
1 TCTCT
179414 CAGATATATA
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
6 6 0.09
10 46 0.68
12 10 0.15
13 6 0.09
ACGTcount: A:0.14, C:0.36, G:0.02, T:0.48
Consensus pattern (10 bp):
TCTCTATCTC
Left flanking sequence: Indices 178818 -- 179317
AAACCTAAACCTATATTCCATTTCTTAGAAACCCATATCGGCAAACTAAACTTATAGACCATGGT
GTCTACCAATCCAATCTTCCAAACCCCAAACCTAACTCTCTAATAGACTTGTTGATTCGGGGCCG
GGGTGACTATATCTAGCCATAGCCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGGACC
CCTGGCCAACGGCCCAACTGGCGGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGATAG
AGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGCCCT
ATCTATATCTGAACTCTATATCTCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAAGAT
ATATATCTCTCTCGACTCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTATATC
TCTCTCTATATCTGAACTCTGAATGAGACTATCTGAATGAGACTA
Right flanking sequence: Indices 179414 -- 179913
CAGATATATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCT
CTCTCTATCTATATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCT
CGGGCCATCTATCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCT
ACCTATCTATATATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCT
ATGGAGGGGGGGGGCGAGGGAATATATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGAC
GGGAGCTATACATAGAATAGCCTGCCCGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCAT
TCTCCATTATATACGTGATACAACCAGTCATCGTATCACGTATATGATAGATATCCCCCTCGAAT
TCCTTCTCGTTTCACAGATGGCTACGGTTGGCCGCTGCCCTATAT
Found at i:179336 original size:16 final size:16
Alignment explanation
Indices: 179315--179354 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
179305 CTGAATGAGA
179315 CTATCTCTATCTCTCT
1 CTATCTCTATCTCTCT
179331 CTATCTCTATCTCTCT
1 CTATCTCTATCTCTCT
179347 CTATCTCT
1 CTATCTCT
179355 CTCTATATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.12, C:0.38, G:0.00, T:0.50
Consensus pattern (16 bp):
CTATCTCTATCTCTCT
Left flanking sequence: Indices 178815 -- 179314
TAGAAACCTAAACCTATATTCCATTTCTTAGAAACCCATATCGGCAAACTAAACTTATAGACCAT
GGTGTCTACCAATCCAATCTTCCAAACCCCAAACCTAACTCTCTAATAGACTTGTTGATTCGGGG
CCGGGGTGACTATATCTAGCCATAGCCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGG
ACCCCTGGCCAACGGCCCAACTGGCGGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGA
TAGAGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGC
CCTATCTATATCTGAACTCTATATCTCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAA
GATATATATCTCTCTCGACTCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTAT
ATCTCTCTCTATATCTGAACTCTGAATGAGACTATCTGAATGAGA
Right flanking sequence: Indices 179355 -- 179854
CTCTATATCTCACTCTGAACTCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCTCAGATA
TATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCTCTCTCT
ATCTATATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCC
ATCTATCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTACCTAT
CTATATATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTATGGAG
GGGGGGGGCGAGGGAATATATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACGGGAGC
TATACATAGAATAGCCTGCCCGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCATTCTCCA
TTATATACGTGATACAACCAGTCATCGTATCACGTATATGATAGA
Found at i:179426 original size:43 final size:45
Alignment explanation
Indices: 179340--179432 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
179330 TCTATCTCTA
* * *
179340 TCTCTCTCTATCTCTCTCTATATCTCACTCTGAACTCTGTATCTC
1 TCTCTCTCTATCTCTCTCTATATCTCACTCAGAACTATATATCTC
*
179385 TCTCTCTCTATCTCTCTCTATATCTCTCTCAG-A-TATATATCTC
1 TCTCTCTCTATCTCTCTCTATATCTCACTCAGAACTATATATCTC
179428 TCTCT
1 TCTCT
179433 ATATCTCGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 13 0.30
44 1 0.02
45 30 0.68
ACGTcount: A:0.16, C:0.34, G:0.03, T:0.46
Consensus pattern (45 bp):
TCTCTCTCTATCTCTCTCTATATCTCACTCAGAACTATATATCTC
Left flanking sequence: Indices 178840 -- 179339
TCTTAGAAACCCATATCGGCAAACTAAACTTATAGACCATGGTGTCTACCAATCCAATCTTCCAA
ACCCCAAACCTAACTCTCTAATAGACTTGTTGATTCGGGGCCGGGGTGACTATATCTAGCCATAG
CCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGGACCCCTGGCCAACGGCCCAACTGGC
GGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGATAGAGGGGGGGGGCCGCCCGGGCCC
CCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGCCCTATCTATATCTGAACTCTATATC
TCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAAGATATATATCTCTCTCGACTCTCTC
TGTATCTCTCTCAGATATATATATATATATATCTCTCTATATCTCTCTCTATATCTGAACTCTGA
ATGAGACTATCTGAATGAGACTATCTCTATCTCTCTCTATCTCTA
Right flanking sequence: Indices 179433 -- 179932
ATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCTCTCTCTATCTATATCTCTC
TCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCCATCTATCTATATA
GCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTACCTATCTATATATGATAT
GGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTATGGAGGGGGGGGGCGAGG
GAATATATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACGGGAGCTATACATAGAATA
GCCTGCCCGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCATTCTCCATTATATACGTGAT
ACAACCAGTCATCGTATCACGTATATGATAGATATCCCCCTCGAATTCCTTCTCGTTTCACAGAT
GGCTACGGTTGGCCGCTGCCCTATATCCTAATTGCCTGTGGACGG
Found at i:179432 original size:2 final size:2
Alignment explanation
Indices: 179318--179414 Score: 59
Period size: 2 Copynumber: 48.0 Consensus size: 2
179308 AATGAGACTA
* * * * *
179318 TC TC TA TC TC TC TC TA TC TC TA TC TC TC TC TA TC TC TC TC TA
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * * *
179360 TA TC TC AC TC TGA AC TC TG TA TC TC TC TC TC TC TA TC TC TC TC
1 TC TC TC TC TC T-C TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
179403 TA TA TC TC TC TC
1 TC TC TC TC TC TC
179415 AGATATATAT
Statistics
Matches: 71, Mismatches: 23, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.13, C:0.37, G:0.02, T:0.47
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 178818 -- 179317
AAACCTAAACCTATATTCCATTTCTTAGAAACCCATATCGGCAAACTAAACTTATAGACCATGGT
GTCTACCAATCCAATCTTCCAAACCCCAAACCTAACTCTCTAATAGACTTGTTGATTCGGGGCCG
GGGTGACTATATCTAGCCATAGCCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGGACC
CCTGGCCAACGGCCCAACTGGCGGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGATAG
AGGGGGGGGGCCGCCCGGGCCCCCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGCCCT
ATCTATATCTGAACTCTATATCTCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAAGAT
ATATATCTCTCTCGACTCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTATATC
TCTCTCTATATCTGAACTCTGAATGAGACTATCTGAATGAGACTA
Right flanking sequence: Indices 179415 -- 179914
AGATATATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCTC
TCTCTATCTATATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTC
GGGCCATCTATCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTA
CCTATCTATATATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTA
TGGAGGGGGGGGGCGAGGGAATATATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACG
GGAGCTATACATAGAATAGCCTGCCCGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCATT
CTCCATTATATACGTGATACAACCAGTCATCGTATCACGTATATGATAGATATCCCCCTCGAATT
CCTTCTCGTTTCACAGATGGCTACGGTTGGCCGCTGCCCTATATC
Found at i:179437 original size:12 final size:12
Alignment explanation
Indices: 179322--179439 Score: 82
Period size: 12 Copynumber: 9.5 Consensus size: 12
179312 AGACTATCTC
179322 TATCTCTCTCTA
1 TATCTCTCTCTA
* *
179334 TCTCTATCTCTCTC
1 TATC--TCTCTCTA
179348 TATCTCTCTCTA
1 TATCTCTCTCTA
*
179360 TATCTCACTCTGA
1 TATCTCTCTCT-A
*
179373 -A---CTCTGTA
1 TATCTCTCTCTA
* *
179381 TCTCTCTCTCTC
1 TATCTCTCTCTA
179393 TATCTCTCTCTA
1 TATCTCTCTCTA
179405 TATCTCTCTCAGATATA
1 TATCTCTCTC-----TA
179422 TATCTCTCTCTA
1 TATCTCTCTCTA
179434 TATCTC
1 TATCTC
179440 GACGAGACTC
Statistics
Matches: 82, Mismatches: 12, Indels: 24
0.69 0.10 0.20
Matches are distributed among these distances:
8 1 0.01
9 4 0.05
12 54 0.66
13 1 0.01
14 10 0.12
17 12 0.15
ACGTcount: A:0.17, C:0.34, G:0.03, T:0.47
Consensus pattern (12 bp):
TATCTCTCTCTA
Left flanking sequence: Indices 178822 -- 179321
CTAAACCTATATTCCATTTCTTAGAAACCCATATCGGCAAACTAAACTTATAGACCATGGTGTCT
ACCAATCCAATCTTCCAAACCCCAAACCTAACTCTCTAATAGACTTGTTGATTCGGGGCCGGGGT
GACTATATCTAGCCATAGCCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGGACCCCTG
GCCAACGGCCCAACTGGCGGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGATAGAGGG
GGGGGGCCGCCCGGGCCCCCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGCCCTATCT
ATATCTGAACTCTATATCTCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAAGATATAT
ATCTCTCTCGACTCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTATATCTCTC
TCTATATCTGAACTCTGAATGAGACTATCTGAATGAGACTATCTC
Right flanking sequence: Indices 179440 -- 179939
GACGAGACTCTATCTTCAGTCTCTTCTCTCTCTATCTCTCTCTCTATCTATATCTCTCTCTATGG
CGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCCATCTATCTATATAGCCCTCT
CCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTACCTATCTATATATGATATGGGGGCC
CCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTATGGAGGGGGGGGGCGAGGGAATATA
TCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACGGGAGCTATACATAGAATAGCCTGCC
CGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCATTCTCCATTATATACGTGATACAACCA
GTCATCGTATCACGTATATGATAGATATCCCCCTCGAATTCCTTCTCGTTTCACAGATGGCTACG
GTTGGCCGCTGCCCTATATCCTAATTGCCTGTGGACGGGTGGAAT
Found at i:179481 original size:12 final size:12
Alignment explanation
Indices: 179464--179488 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
179454 TTCAGTCTCT
179464 TCTCTCTCTATC
1 TCTCTCTCTATC
179476 TCTCTCTCTATC
1 TCTCTCTCTATC
179488 T
1 T
179489 ATATCTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.40, G:0.00, T:0.52
Consensus pattern (12 bp):
TCTCTCTCTATC
Left flanking sequence: Indices 178964 -- 179463
CCATAGCCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGGACCCCTGGCCAACGGCCCA
ACTGGCGGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGATAGAGGGGGGGGGCCGCCC
GGGCCCCCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGCCCTATCTATATCTGAACTC
TATATCTCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAAGATATATATCTCTCTCGAC
TCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTATATCTCTCTCTATATCTGAA
CTCTGAATGAGACTATCTGAATGAGACTATCTCTATCTCTCTCTATCTCTATCTCTCTCTATCTC
TCTCTATATCTCACTCTGAACTCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCTCAGAT
ATATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAGTCTCT
Right flanking sequence: Indices 179489 -- 179988
ATATCTCTCTCTATGGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCCATCT
ATCTATATAGCCCTCTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTACCTATCTAT
ATATGATATGGGGGCCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTATGGAGGGGG
GGGGCGAGGGAATATATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACGGGAGCTATA
CATAGAATAGCCTGCCCGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCATTCTCCATTAT
ATACGTGATACAACCAGTCATCGTATCACGTATATGATAGATATCCCCCTCGAATTCCTTCTCGT
TTCACAGATGGCTACGGTTGGCCGCTGCCCTATATCCTAATTGCCTGTGGACGGGTGGAATACGG
GAATATCAACTTCCCTCCGGCCCAGATAGATAAGATAAGATAGTT
Found at i:179489 original size:16 final size:16
Alignment explanation
Indices: 179459--179502 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
179449 CTATCTTCAG
*
179459 TCTCT-TCTCTCTCTA
1 TCTCTCTCTCTATCTA
179474 TCTCTCTCTCTATCTA
1 TCTCTCTCTCTATCTA
*
179490 TATCTCTCTCTAT
1 TCTCTCTCTCTAT
179503 GGCGCCCGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 5 0.19
16 21 0.81
ACGTcount: A:0.11, C:0.36, G:0.00, T:0.52
Consensus pattern (16 bp):
TCTCTCTCTCTATCTA
Left flanking sequence: Indices 178959 -- 179458
TCTAGCCATAGCCCGGCCCCATATATTCTATACTATAGATAGGCGCCGAGGACCCCTGGCCAACG
GCCCAACTGGCGGGCACCAGAGATATGGCGACCCTATCTATCCCATATAGATAGAGGGGGGGGGC
CGCCCGGGCCCCCCTCTCTATATATGGCATGGCAGTTGGGGGAGTCGGCGCCCTATCTATATCTG
AACTCTATATCTCTCTCAGATAAGATATATATCTCTCGATCTCTCAGATAAGATATATATCTCTC
TCGACTCTCTCTGTATCTCTCTCAGATATATATATATATATATCTCTCTATATCTCTCTCTATAT
CTGAACTCTGAATGAGACTATCTGAATGAGACTATCTCTATCTCTCTCTATCTCTATCTCTCTCT
ATCTCTCTCTATATCTCACTCTGAACTCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCT
CAGATATATATCTCTCTCTATATCTCGACGAGACTCTATCTTCAG
Right flanking sequence: Indices 179503 -- 180002
GGCGCCCGCCCACCCGGGGGAGAGAGGGTGGGGCCATCTCTCGGGCCATCTATCTATATAGCCCT
CTCCCCTATCTAGACTCTATATTGGGGTGGGGGCACCCCCTACCTATCTATATATGATATGGGGG
CCCCATAGAGAAGATAGAATAGGGAGGCTCCCCTCTATTCTATGGAGGGGGGGGGCGAGGGAATA
TATCCCATCGGGCTCTCGGCACGAGAGATAGATATGGCGACGGGAGCTATACATAGAATAGCCTG
CCCGGGGCGCCATATATCTATATAGGCGGGCGTCCATCCATTCTCCATTATATACGTGATACAAC
CAGTCATCGTATCACGTATATGATAGATATCCCCCTCGAATTCCTTCTCGTTTCACAGATGGCTA
CGGTTGGCCGCTGCCCTATATCCTAATTGCCTGTGGACGGGTGGAATACGGGAATATCAACTTCC
CTCCGGCCCAGATAGATAAGATAAGATAGTTCAGGGAGGGGGCCC
Found at i:180595 original size:10 final size:10
Alignment explanation
Indices: 180572--180624 Score: 70
Period size: 10 Copynumber: 5.3 Consensus size: 10
180562 AACAGAGTTC
180572 AGATAGAGAG
1 AGATAGAGAG
* *
180582 AGATATAGAT
1 AGATAGAGAG
*
180592 AGATCGAGAG
1 AGATAGAGAG
*
180602 ATATAGAGAG
1 AGATAGAGAG
180612 AGATAGAGAG
1 AGATAGAGAG
180622 AGA
1 AGA
180625 GAGACTGAAG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.49, C:0.02, G:0.34, T:0.15
Consensus pattern (10 bp):
AGATAGAGAG
Left flanking sequence: Indices 180072 -- 180571
TGGCATATGTAGTTTTAGTTTAGTTGGCCCCCCCCTATCTATATATGGCCATATAGAGAGAGATA
TAGAGGGGGGCCCTCGATCCATATCTATCGATCGGGCCTAGTCTAGTATATGTGACTCGGGACCC
GGGGTGGAGGGCGGCTATATGGATTCTAGTCGGTCAGGCCCCCCTCTATACTCTCTATATGGCCC
TCATCTAGAACTCTCTATGGGGCCCATATCTATGTTTAGATAGGGCCGGCCAGATAGAGAGAGGG
CCGAGATATGGATATATGGGTTAGTCCCCATCCGGCCCCCCTCCCCCCGATCTATATATCTCATA
TCGAGTATAGATAGGGACCTACCAACCGGACCATACATGTAGAGGGGGGCTCAACCTAACCTATA
TATGGGGTGGGGGGGAGTATAGAGGGGGGACCTCGACCCCATGGGATATCTTTCTCTCTTTCGGA
GCTCCGAGATACGACTGCCCCATATCATATACGCCAACAGAGTTC
Right flanking sequence: Indices 180625 -- 181124
GAGACTGAAGAGTGAAGAGTGAAGAGTGAGAGGTAGATAGAGATGAAGATAGACAGATAGAGAGG
TAGATAGAGATGAAGATAGACAGATAGAGAGAGAGATACTCTCATTCAGATAGAGATATATATCT
GAGAGAGATATAGATAGATCGAGAGATCTATATAGAGATAGAGAGAGAGATATAGAGATAGATAG
AGAGAGAGAGACTGAAGAGTGAAGAGTGAGATATAGAGTTCAGATAGTGGGCGACTAGCCGAAAC
GACTAGATCTATCTCTATATAGTGGTGTGATTCCCTTCCTTCCCCCTTCGGGGAGTGGTTCCCAA
CCAAGACTGACTATGCAGAGGGTTCCCAACCGCTTGCCCAAACCCCGAGTCCTCTGCCCAACCGG
GGACTGGGCACTACTGAAGAGGGCCCCCTGCCCAGCGATAGCTTCTGCGGGAGCACTCGCGGTAC
TGGCCACTGAACTATGGGGGTCCCTTTTGCAGCGGATAATCCGCA
Found at i:180684 original size:20 final size:20
Alignment explanation
Indices: 180659--180719 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 20
180649 AGTGAGAGGT
180659 AGATAGAGATGAAGATAGAC
1 AGATAGAGATGAAGATAGAC
180679 AGATAGAGA-G--G-T----
1 AGATAGAGATGAAGATAGAC
180691 AGATAGAGATGAAGATAGAC
1 AGATAGAGATGAAGATAGAC
180711 AGATAGAGA
1 AGATAGAGA
180720 GAGAGATACT
Statistics
Matches: 33, Mismatches: 0, Indels: 16
0.67 0.00 0.33
Matches are distributed among these distances:
12 9 0.27
13 1 0.03
15 1 0.03
16 2 0.06
17 1 0.03
19 1 0.03
20 18 0.55
ACGTcount: A:0.49, C:0.03, G:0.33, T:0.15
Consensus pattern (20 bp):
AGATAGAGATGAAGATAGAC
Left flanking sequence: Indices 180159 -- 180658
ATCTATCGATCGGGCCTAGTCTAGTATATGTGACTCGGGACCCGGGGTGGAGGGCGGCTATATGG
ATTCTAGTCGGTCAGGCCCCCCTCTATACTCTCTATATGGCCCTCATCTAGAACTCTCTATGGGG
CCCATATCTATGTTTAGATAGGGCCGGCCAGATAGAGAGAGGGCCGAGATATGGATATATGGGTT
AGTCCCCATCCGGCCCCCCTCCCCCCGATCTATATATCTCATATCGAGTATAGATAGGGACCTAC
CAACCGGACCATACATGTAGAGGGGGGCTCAACCTAACCTATATATGGGGTGGGGGGGAGTATAG
AGGGGGGACCTCGACCCCATGGGATATCTTTCTCTCTTTCGGAGCTCCGAGATACGACTGCCCCA
TATCATATACGCCAACAGAGTTCAGATAGAGAGAGATATAGATAGATCGAGAGATATAGAGAGAG
ATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAAGAGTGAGAGGT
Right flanking sequence: Indices 180720 -- 181219
GAGAGATACTCTCATTCAGATAGAGATATATATCTGAGAGAGATATAGATAGATCGAGAGATCTA
TATAGAGATAGAGAGAGAGATATAGAGATAGATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAG
ATATAGAGTTCAGATAGTGGGCGACTAGCCGAAACGACTAGATCTATCTCTATATAGTGGTGTGA
TTCCCTTCCTTCCCCCTTCGGGGAGTGGTTCCCAACCAAGACTGACTATGCAGAGGGTTCCCAAC
CGCTTGCCCAAACCCCGAGTCCTCTGCCCAACCGGGGACTGGGCACTACTGAAGAGGGCCCCCTG
CCCAGCGATAGCTTCTGCGGGAGCACTCGCGGTACTGGCCACTGAACTATGGGGGTCCCTTTTGC
AGCGGATAATCCGCAGCGCCCTATACCCTCTATTTGAGGGGGGGCGGGCCCCTCCCCTCCCCTCC
CCCTCCCCCTCCCCCTCTATATAGATCTCGATCTCGATCTCGATC
Found at i:180727 original size:12 final size:12
Alignment explanation
Indices: 180572--180725 Score: 63
Period size: 12 Copynumber: 12.9 Consensus size: 12
180562 AACAGAGTTC
180572 AGATAGAGAGAG
1 AGATAGAGAGAG
*
180584 ATATAGATAGATCGAG
1 AGATAG--AGA--GAG
*
180600 AGATATAGAGAG
1 AGATAGAGAGAG
180612 AGATAGAGAGAG
1 AGATAGAGAGAG
* **
180624 AGAGACTGA-AG
1 AGATAGAGAGAG
180635 AG-T-GA-AGAG
1 AGATAGAGAGAG
* *
180644 TGA-AGAGTGAG
1 AGATAGAGAGAG
* *
180655 AGGTAGATAGAG
1 AGATAGAGAGAG
* *
180667 ATGA-AGATAGAC
1 A-GATAGAGAGAG
180679 AGATAGAGAG-G
1 AGATAGAGAGAG
180690 TAGATAGAGATGA-
1 -AGATAGAGA-GAG
* *
180703 AGATAGACAGAT
1 AGATAGAGAGAG
*
180715 AGAGAGAGAGA
1 AGATAGAGAGA
180726 TACTCTCATT
Statistics
Matches: 104, Mismatches: 23, Indels: 30
0.66 0.15 0.19
Matches are distributed among these distances:
8 1 0.01
9 3 0.03
10 2 0.02
11 12 0.12
12 71 0.68
13 2 0.02
14 6 0.06
16 7 0.07
ACGTcount: A:0.47, C:0.03, G:0.36, T:0.14
Consensus pattern (12 bp):
AGATAGAGAGAG
Left flanking sequence: Indices 180072 -- 180571
TGGCATATGTAGTTTTAGTTTAGTTGGCCCCCCCCTATCTATATATGGCCATATAGAGAGAGATA
TAGAGGGGGGCCCTCGATCCATATCTATCGATCGGGCCTAGTCTAGTATATGTGACTCGGGACCC
GGGGTGGAGGGCGGCTATATGGATTCTAGTCGGTCAGGCCCCCCTCTATACTCTCTATATGGCCC
TCATCTAGAACTCTCTATGGGGCCCATATCTATGTTTAGATAGGGCCGGCCAGATAGAGAGAGGG
CCGAGATATGGATATATGGGTTAGTCCCCATCCGGCCCCCCTCCCCCCGATCTATATATCTCATA
TCGAGTATAGATAGGGACCTACCAACCGGACCATACATGTAGAGGGGGGCTCAACCTAACCTATA
TATGGGGTGGGGGGGAGTATAGAGGGGGGACCTCGACCCCATGGGATATCTTTCTCTCTTTCGGA
GCTCCGAGATACGACTGCCCCATATCATATACGCCAACAGAGTTC
Right flanking sequence: Indices 180726 -- 181225
TACTCTCATTCAGATAGAGATATATATCTGAGAGAGATATAGATAGATCGAGAGATCTATATAGA
GATAGAGAGAGAGATATAGAGATAGATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAGATATAG
AGTTCAGATAGTGGGCGACTAGCCGAAACGACTAGATCTATCTCTATATAGTGGTGTGATTCCCT
TCCTTCCCCCTTCGGGGAGTGGTTCCCAACCAAGACTGACTATGCAGAGGGTTCCCAACCGCTTG
CCCAAACCCCGAGTCCTCTGCCCAACCGGGGACTGGGCACTACTGAAGAGGGCCCCCTGCCCAGC
GATAGCTTCTGCGGGAGCACTCGCGGTACTGGCCACTGAACTATGGGGGTCCCTTTTGCAGCGGA
TAATCCGCAGCGCCCTATACCCTCTATTTGAGGGGGGGCGGGCCCCTCCCCTCCCCTCCCCCTCC
CCCTCCCCCTCTATATAGATCTCGATCTCGATCTCGATCGATCAG
Found at i:180727 original size:32 final size:32
Alignment explanation
Indices: 180652--180720 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
180642 AGTGAAGAGT
180652 GAGAGGTAGATAGAGATGAAGATAGACAGATA
1 GAGAGGTAGATAGAGATGAAGATAGACAGATA
180684 GAGAGGTAGATAGAGATGAAGATAGACAGATA
1 GAGAGGTAGATAGAGATGAAGATAGACAGATA
180716 GAGAG
1 GAGAG
180721 AGAGATACTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.46, C:0.03, G:0.36, T:0.14
Consensus pattern (32 bp):
GAGAGGTAGATAGAGATGAAGATAGACAGATA
Left flanking sequence: Indices 180152 -- 180651
GATCCATATCTATCGATCGGGCCTAGTCTAGTATATGTGACTCGGGACCCGGGGTGGAGGGCGGC
TATATGGATTCTAGTCGGTCAGGCCCCCCTCTATACTCTCTATATGGCCCTCATCTAGAACTCTC
TATGGGGCCCATATCTATGTTTAGATAGGGCCGGCCAGATAGAGAGAGGGCCGAGATATGGATAT
ATGGGTTAGTCCCCATCCGGCCCCCCTCCCCCCGATCTATATATCTCATATCGAGTATAGATAGG
GACCTACCAACCGGACCATACATGTAGAGGGGGGCTCAACCTAACCTATATATGGGGTGGGGGGG
AGTATAGAGGGGGGACCTCGACCCCATGGGATATCTTTCTCTCTTTCGGAGCTCCGAGATACGAC
TGCCCCATATCATATACGCCAACAGAGTTCAGATAGAGAGAGATATAGATAGATCGAGAGATATA
GAGAGAGATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAAGAGT
Right flanking sequence: Indices 180721 -- 181220
AGAGATACTCTCATTCAGATAGAGATATATATCTGAGAGAGATATAGATAGATCGAGAGATCTAT
ATAGAGATAGAGAGAGAGATATAGAGATAGATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAGA
TATAGAGTTCAGATAGTGGGCGACTAGCCGAAACGACTAGATCTATCTCTATATAGTGGTGTGAT
TCCCTTCCTTCCCCCTTCGGGGAGTGGTTCCCAACCAAGACTGACTATGCAGAGGGTTCCCAACC
GCTTGCCCAAACCCCGAGTCCTCTGCCCAACCGGGGACTGGGCACTACTGAAGAGGGCCCCCTGC
CCAGCGATAGCTTCTGCGGGAGCACTCGCGGTACTGGCCACTGAACTATGGGGGTCCCTTTTGCA
GCGGATAATCCGCAGCGCCCTATACCCTCTATTTGAGGGGGGGCGGGCCCCTCCCCTCCCCTCCC
CCTCCCCCTCCCCCTCTATATAGATCTCGATCTCGATCTCGATCG
Found at i:180780 original size:20 final size:20
Alignment explanation
Indices: 180754--180826 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 20
180744 GATATATATC
180754 TGAGAGAGATAT-AGATAGA
1 TGAGAGAGATATAAGATAGA
*
180773 TCGAGAGATCTATATAGAGATAGA
1 T-GAGAGA--GATATA-AGATAGA
180797 -GAGAGAGATATAGAGATAGA
1 TGAGAGAGATATA-AGATAGA
180817 TAGAGAGAGA
1 T-GAGAGAGA
180827 GAGACTGAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
19 1 0.02
20 19 0.42
22 18 0.40
24 7 0.16
ACGTcount: A:0.47, C:0.03, G:0.32, T:0.19
Consensus pattern (20 bp):
TGAGAGAGATATAAGATAGA
Left flanking sequence: Indices 180254 -- 180753
CTCTATATGGCCCTCATCTAGAACTCTCTATGGGGCCCATATCTATGTTTAGATAGGGCCGGCCA
GATAGAGAGAGGGCCGAGATATGGATATATGGGTTAGTCCCCATCCGGCCCCCCTCCCCCCGATC
TATATATCTCATATCGAGTATAGATAGGGACCTACCAACCGGACCATACATGTAGAGGGGGGCTC
AACCTAACCTATATATGGGGTGGGGGGGAGTATAGAGGGGGGACCTCGACCCCATGGGATATCTT
TCTCTCTTTCGGAGCTCCGAGATACGACTGCCCCATATCATATACGCCAACAGAGTTCAGATAGA
GAGAGATATAGATAGATCGAGAGATATAGAGAGAGATAGAGAGAGAGAGACTGAAGAGTGAAGAG
TGAAGAGTGAGAGGTAGATAGAGATGAAGATAGACAGATAGAGAGGTAGATAGAGATGAAGATAG
ACAGATAGAGAGAGAGATACTCTCATTCAGATAGAGATATATATC
Right flanking sequence: Indices 180827 -- 181326
GAGACTGAAGAGTGAAGAGTGAGATATAGAGTTCAGATAGTGGGCGACTAGCCGAAACGACTAGA
TCTATCTCTATATAGTGGTGTGATTCCCTTCCTTCCCCCTTCGGGGAGTGGTTCCCAACCAAGAC
TGACTATGCAGAGGGTTCCCAACCGCTTGCCCAAACCCCGAGTCCTCTGCCCAACCGGGGACTGG
GCACTACTGAAGAGGGCCCCCTGCCCAGCGATAGCTTCTGCGGGAGCACTCGCGGTACTGGCCAC
TGAACTATGGGGGTCCCTTTTGCAGCGGATAATCCGCAGCGCCCTATACCCTCTATTTGAGGGGG
GGCGGGCCCCTCCCCTCCCCTCCCCCTCCCCCTCCCCCTCTATATAGATCTCGATCTCGATCTCG
ATCGATCAGATCTGGCAGATAGGGCCCCCTCTATCTAGATATGGGGATGGGCATATACCGAGCCC
TCACTGGATTCCCTCGGTGAGGGTGCAGCGGATCGGCCTAAGCCT
Found at i:180803 original size:12 final size:12
Alignment explanation
Indices: 180788--180828 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
180778 AGATCTATAT
180788 AGAGATAGAGAG
1 AGAGATAGAGAG
*
180800 AGAGATATAGAG
1 AGAGATAGAGAG
*
180812 ATAGATAGAGAG
1 AGAGATAGAGAG
180824 AGAGA
1 AGAGA
180829 GACTGAAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.37, T:0.12
Consensus pattern (12 bp):
AGAGATAGAGAG
Left flanking sequence: Indices 180288 -- 180787
GCCCATATCTATGTTTAGATAGGGCCGGCCAGATAGAGAGAGGGCCGAGATATGGATATATGGGT
TAGTCCCCATCCGGCCCCCCTCCCCCCGATCTATATATCTCATATCGAGTATAGATAGGGACCTA
CCAACCGGACCATACATGTAGAGGGGGGCTCAACCTAACCTATATATGGGGTGGGGGGGAGTATA
GAGGGGGGACCTCGACCCCATGGGATATCTTTCTCTCTTTCGGAGCTCCGAGATACGACTGCCCC
ATATCATATACGCCAACAGAGTTCAGATAGAGAGAGATATAGATAGATCGAGAGATATAGAGAGA
GATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAAGAGTGAGAGGTAGATAGAGATGAAGATAGA
CAGATAGAGAGGTAGATAGAGATGAAGATAGACAGATAGAGAGAGAGATACTCTCATTCAGATAG
AGATATATATCTGAGAGAGATATAGATAGATCGAGAGATCTATAT
Right flanking sequence: Indices 180829 -- 181328
GACTGAAGAGTGAAGAGTGAGATATAGAGTTCAGATAGTGGGCGACTAGCCGAAACGACTAGATC
TATCTCTATATAGTGGTGTGATTCCCTTCCTTCCCCCTTCGGGGAGTGGTTCCCAACCAAGACTG
ACTATGCAGAGGGTTCCCAACCGCTTGCCCAAACCCCGAGTCCTCTGCCCAACCGGGGACTGGGC
ACTACTGAAGAGGGCCCCCTGCCCAGCGATAGCTTCTGCGGGAGCACTCGCGGTACTGGCCACTG
AACTATGGGGGTCCCTTTTGCAGCGGATAATCCGCAGCGCCCTATACCCTCTATTTGAGGGGGGG
CGGGCCCCTCCCCTCCCCTCCCCCTCCCCCTCCCCCTCTATATAGATCTCGATCTCGATCTCGAT
CGATCAGATCTGGCAGATAGGGCCCCCTCTATCTAGATATGGGGATGGGCATATACCGAGCCCTC
ACTGGATTCCCTCGGTGAGGGTGCAGCGGATCGGCCTAAGCCTAT
Found at i:181179 original size:6 final size:6
Alignment explanation
Indices: 181158--181191 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
181148 GGGGGGCGGG
181158 CCCCT- CCCCT- CCCCTC CCCCTC CCCCTC CCCCTC
1 CCCCTC CCCCTC CCCCTC CCCCTC CCCCTC CCCCTC
181192 TATATAGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.00, C:0.82, G:0.00, T:0.18
Consensus pattern (6 bp):
CCCCTC
Left flanking sequence: Indices 180658 -- 181157
TAGATAGAGATGAAGATAGACAGATAGAGAGGTAGATAGAGATGAAGATAGACAGATAGAGAGAG
AGATACTCTCATTCAGATAGAGATATATATCTGAGAGAGATATAGATAGATCGAGAGATCTATAT
AGAGATAGAGAGAGAGATATAGAGATAGATAGAGAGAGAGAGACTGAAGAGTGAAGAGTGAGATA
TAGAGTTCAGATAGTGGGCGACTAGCCGAAACGACTAGATCTATCTCTATATAGTGGTGTGATTC
CCTTCCTTCCCCCTTCGGGGAGTGGTTCCCAACCAAGACTGACTATGCAGAGGGTTCCCAACCGC
TTGCCCAAACCCCGAGTCCTCTGCCCAACCGGGGACTGGGCACTACTGAAGAGGGCCCCCTGCCC
AGCGATAGCTTCTGCGGGAGCACTCGCGGTACTGGCCACTGAACTATGGGGGTCCCTTTTGCAGC
GGATAATCCGCAGCGCCCTATACCCTCTATTTGAGGGGGGGCGGG
Right flanking sequence: Indices 181192 -- 181691
TATATAGATCTCGATCTCGATCTCGATCGATCAGATCTGGCAGATAGGGCCCCCTCTATCTAGAT
ATGGGGATGGGCATATACCGAGCCCTCACTGGATTCCCTCGGTGAGGGTGCAGCGGATCGGCCTA
AGCCTATCGGTTGATCCGCTGCTGCCTCGGGGCCCCTATCTAGAATTTAGAGGTGATGCGCAACT
CGGCTGTATGGTAGGGAGTGTCCTTTGTTCTTAGCGCCCGAGATAGAGAAATTCATCTCATCTGG
TGGGGGAAGGGGTGGGTGGGAAGCGGGCCCCTGTATCTATTCTCTACGGGGAGGTTGGGGCCCCC
CCCCTCCTCTCATTCATAATTCTAGATATGGCCCCCATACCATATAGAGGCAAACCCTCCGGGCC
AACCCGAGCCAACCCGAGCGACTATAGGTAAGCCCTCTCCCTTCCTCCTATGGTGGTTGTGGTGC
CCCGCCAGGCCAGGTTTCTGGGGAGGGGCACCTACCCAACCGGGA
Found at i:182400 original size:16 final size:15
Alignment explanation
Indices: 182365--182402 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
182355 GACCACCCAC
*
182365 CGGGGGGTTATTGAT
1 CGGGGGGTTATCGAT
182380 CGGGGGGTTATCGAT
1 CGGGGGGTTATCGAT
*
182395 TGGGGGGT
1 CGGGGGGT
182403 CGAAACTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.08, G:0.53, T:0.29
Consensus pattern (15 bp):
CGGGGGGTTATCGAT
Left flanking sequence: Indices 181865 -- 182364
TGGCCCCCTATGAATTGAAAGGGCCTATAGAGAGATAGGGCCCTATACTGAACTCTATCTGGGGG
GCCCCCCCCCTCCATATAGAGAATTCTAGATAGGGGCCTATAAACTCTAGATGGTCGGCGCGAGG
GTCTAGACTCTACTCAAGAGATATAGGGAGGGGGGGGCTCGGCCTCCCTATCTCACCCAATATGC
TCGGGGGTCGGCCATATCTATATATAGGGGGGCCACCTCTCTCTATCGATATGGCCGCCCCCCTC
TATATAGATCTGGCAGATAGGGGCCCGCCCCTACCCTCTATCTATAGAATAGATCTGGCTGGGCC
TAGATATAGGGCATGAGATAGAGATATTGAGATCAGATCTCCGAGCATATAGTCTATATAGTCTC
TGGGCCCCCACCCCCACATCGTCATAGGGGATAGGGGCACCCTCTATCTAGATGGGCATAACTAA
ACTCCCCGCCCTGCCCTCCGTCGTGGGGGGCCCTCGACCACCCAC
Right flanking sequence: Indices 182403 -- 182902
CGAAACTACACGTCCCGTCGCCATATCCATCTATATAGAGGGTGTCGACTAGACTCCCCCCTTTC
TATTCTCTCTATTCTATAGGGTAGGGCTCCGGGGGTCGAGCGCCCCATACCATATAGAGTCTATA
TAGGGCGGTCCTCGTCCCCCCGAGCAGAGAATCTATCCCATCTATATAGATCTGGGGGGGCCCTA
GACTCTACTATAGATATCTGGGGGGCCCGTCGCCATATCTCTATATAGGGCGCTCTCCGCCCAGA
TAGATCAGATCTATAGGTGATCGTGATCAATGCCAGCCATATATAGAGGAGAGGCCCCTTCCCTC
TCTCCCCTCTCCATATGGTCGGTTCTACAGTCTAGTGGCCTCTCCTCTCCTCTCCTCTCCTCTCC
TCTATATATGGCTGGCATTGATCACGATCACCTATAGATCTTCATCGGCCCCTGATCTCTATGGA
CATTTGTATTACATATATAATAGAGCGATAGCCGCCCCCCCCTCT
Found at i:182776 original size:5 final size:5
Alignment explanation
Indices: 182766--182795 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
182756 AGTCTAGTGG
182766 CCTCT CCTCT CCTCT CCTCT CCTCT CCTCT
1 CCTCT CCTCT CCTCT CCTCT CCTCT CCTCT
182796 ATATATGGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
CCTCT
Left flanking sequence: Indices 182266 -- 182765
CCCCACATCGTCATAGGGGATAGGGGCACCCTCTATCTAGATGGGCATAACTAAACTCCCCGCCC
TGCCCTCCGTCGTGGGGGGCCCTCGACCACCCACCGGGGGGTTATTGATCGGGGGGTTATCGATT
GGGGGGTCGAAACTACACGTCCCGTCGCCATATCCATCTATATAGAGGGTGTCGACTAGACTCCC
CCCTTTCTATTCTCTCTATTCTATAGGGTAGGGCTCCGGGGGTCGAGCGCCCCATACCATATAGA
GTCTATATAGGGCGGTCCTCGTCCCCCCGAGCAGAGAATCTATCCCATCTATATAGATCTGGGGG
GGCCCTAGACTCTACTATAGATATCTGGGGGGCCCGTCGCCATATCTCTATATAGGGCGCTCTCC
GCCCAGATAGATCAGATCTATAGGTGATCGTGATCAATGCCAGCCATATATAGAGGAGAGGCCCC
TTCCCTCTCTCCCCTCTCCATATGGTCGGTTCTACAGTCTAGTGG
Right flanking sequence: Indices 182796 -- 183295
ATATATGGCTGGCATTGATCACGATCACCTATAGATCTTCATCGGCCCCTGATCTCTATGGACAT
TTGTATTACATATATAATAGAGCGATAGCCGCCCCCCCCTCTCTATTCTATCATAGAGCCGAGAT
ATAATAGATAGGGGGGGGGTGGGGGGGCCTCCTTGCAAACATGTACCTCCGCTTGCCCGTCTCTG
ATAAGGAATGAAACGAAAGAATGAGTTTACGACACATAATTTGGTTCGATGGCTGTTCCCCACTA
ACCACAAGGATATAGGGACTCTCCATTCAATCTTCGGTGCCGTTGCTGGAGTGATGGGCACATGC
TTCTCAGTACCAATTCGTATGGAATTAGCACAACCTGGCGATCAAATTCTTGGTGGGAATCATCA
ACTCTATAATGTTTTAATAACGGCTCACGCTTCTCCCACGACCTTTTTTATGGTGATGCCGGCGG
TGATAGGTGGATTTGGGAATTGGTTCGTTCCGATTCCTATAGGTG
Found at i:186067 original size:14 final size:14
Alignment explanation
Indices: 186048--186075 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
186038 TAGATAGATA
186048 GATGGCACTCGACT
1 GATGGCACTCGACT
186062 GATGGCACTCGACT
1 GATGGCACTCGACT
186076 ACCGGCACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (14 bp):
GATGGCACTCGACT
Left flanking sequence: Indices 185548 -- 186047
GGGTGAATAATATAGACCCGGAATGGAATGGATAGATAGCCTAGCCGCCCCCTAGATTAATAGGC
CTCCTTCCCACACATTCATCCTCCTCCCCAAGAATCGGACCATTCACACCCCGAACAACGCTCCC
ATTCATCCGTTATAGCCGAATCATGAACCAACGAATATGAATATGGTGGACTATTCTCCGATGCA
CCCAAACCAAATCTATTTACCGAGATAGAGATAGGTTCCCCTATCTAGAATTCTAGAGAAGGGGG
CCTCTTAGTTTAGGTTTAGGTTTAGTTGCTGTAACGTCTACAGAGAGAGGGTAGAGAGAGGGCTG
ACCCCCTATCTCCCCCATCGGGGGTCCGGGGGATATAGATAGCCATAGCCGCCCCCATGTAGATA
TATAGGCCGCCCAGTAAGAATTCATTCCTCTCGGGTTGGGAGTCGGAATAGCGACAATATCGGAT
AAGCCTCTACCATGACGACTAGGGCCCTATATAGATAGATAGATA
Right flanking sequence: Indices 186076 -- 186575
ACCGGCACTCGTGATTGATCACCGGTCTACCACTCACCGGTCTACCATAATGTAATGAATACCGC
CACTCACCGGTCTACCATAATGTAATGAATACCGCCACTCACCGGTCTACCAACACCACTGATGA
ACATAGATCTCAGATCTGTCTGGACTAGATCGATCTGATAGCTATCCATCTAGATTCTAGATGGA
AAGATCTCTATTCTATATGCCCTCTATATCATATCTATCTGGCGCTCTTAGATCTGATAGTCTGC
CTATCCCTATCCCGCTTCTATCCAATCCACCTATCCATCTAGAATCTAGATGGAAAGATGCCGCC
CCCCCTCTATATAGATGGGTTATAGGGGCTCGAGATATCCGCCGCCAGATAGTTCAGGATAGTTC
AGAGAGGGGGCCGCCTCTCTATATAGATATTCTATCCGCCGCCAGATAGAGAAGATAAGATATGA
TCTGATCTATATAGAGGGGGAGGGGGAGGGGGAGTCTCGAGAGCC
Found at i:186114 original size:15 final size:15
Alignment explanation
Indices: 186094--186122 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
186084 TCGTGATTGA
186094 TCACCGGTCTACCAC
1 TCACCGGTCTACCAC
186109 TCACCGGTCTACCA
1 TCACCGGTCTACCA
186123 TAATGTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.45, G:0.14, T:0.21
Consensus pattern (15 bp):
TCACCGGTCTACCAC
Left flanking sequence: Indices 185594 -- 186093
GCCCCCTAGATTAATAGGCCTCCTTCCCACACATTCATCCTCCTCCCCAAGAATCGGACCATTCA
CACCCCGAACAACGCTCCCATTCATCCGTTATAGCCGAATCATGAACCAACGAATATGAATATGG
TGGACTATTCTCCGATGCACCCAAACCAAATCTATTTACCGAGATAGAGATAGGTTCCCCTATCT
AGAATTCTAGAGAAGGGGGCCTCTTAGTTTAGGTTTAGGTTTAGTTGCTGTAACGTCTACAGAGA
GAGGGTAGAGAGAGGGCTGACCCCCTATCTCCCCCATCGGGGGTCCGGGGGATATAGATAGCCAT
AGCCGCCCCCATGTAGATATATAGGCCGCCCAGTAAGAATTCATTCCTCTCGGGTTGGGAGTCGG
AATAGCGACAATATCGGATAAGCCTCTACCATGACGACTAGGGCCCTATATAGATAGATAGATAG
ATGGCACTCGACTGATGGCACTCGACTACCGGCACTCGTGATTGA
Right flanking sequence: Indices 186123 -- 186622
TAATGTAATGAATACCGCCACTCACCGGTCTACCATAATGTAATGAATACCGCCACTCACCGGTC
TACCAACACCACTGATGAACATAGATCTCAGATCTGTCTGGACTAGATCGATCTGATAGCTATCC
ATCTAGATTCTAGATGGAAAGATCTCTATTCTATATGCCCTCTATATCATATCTATCTGGCGCTC
TTAGATCTGATAGTCTGCCTATCCCTATCCCGCTTCTATCCAATCCACCTATCCATCTAGAATCT
AGATGGAAAGATGCCGCCCCCCCTCTATATAGATGGGTTATAGGGGCTCGAGATATCCGCCGCCA
GATAGTTCAGGATAGTTCAGAGAGGGGGCCGCCTCTCTATATAGATATTCTATCCGCCGCCAGAT
AGAGAAGATAAGATATGATCTGATCTATATAGAGGGGGAGGGGGAGGGGGAGTCTCGAGAGCCCC
CCATCCATATAGAGATAGGGAGATAGGGGTCGCCATCTCTCTATA
Found at i:186144 original size:35 final size:35
Alignment explanation
Indices: 186105--186192 Score: 176
Period size: 35 Copynumber: 2.5 Consensus size: 35
186095 CACCGGTCTA
186105 CCACTCACCGGTCTACCATAATGTAATGAATACCG
1 CCACTCACCGGTCTACCATAATGTAATGAATACCG
186140 CCACTCACCGGTCTACCATAATGTAATGAATACCG
1 CCACTCACCGGTCTACCATAATGTAATGAATACCG
186175 CCACTCACCGGTCTACCA
1 CCACTCACCGGTCTACCA
186193 ACACCACTGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.30, C:0.35, G:0.14, T:0.22
Consensus pattern (35 bp):
CCACTCACCGGTCTACCATAATGTAATGAATACCG
Left flanking sequence: Indices 185605 -- 186104
TAATAGGCCTCCTTCCCACACATTCATCCTCCTCCCCAAGAATCGGACCATTCACACCCCGAACA
ACGCTCCCATTCATCCGTTATAGCCGAATCATGAACCAACGAATATGAATATGGTGGACTATTCT
CCGATGCACCCAAACCAAATCTATTTACCGAGATAGAGATAGGTTCCCCTATCTAGAATTCTAGA
GAAGGGGGCCTCTTAGTTTAGGTTTAGGTTTAGTTGCTGTAACGTCTACAGAGAGAGGGTAGAGA
GAGGGCTGACCCCCTATCTCCCCCATCGGGGGTCCGGGGGATATAGATAGCCATAGCCGCCCCCA
TGTAGATATATAGGCCGCCCAGTAAGAATTCATTCCTCTCGGGTTGGGAGTCGGAATAGCGACAA
TATCGGATAAGCCTCTACCATGACGACTAGGGCCCTATATAGATAGATAGATAGATGGCACTCGA
CTGATGGCACTCGACTACCGGCACTCGTGATTGATCACCGGTCTA
Right flanking sequence: Indices 186193 -- 186692
ACACCACTGATGAACATAGATCTCAGATCTGTCTGGACTAGATCGATCTGATAGCTATCCATCTA
GATTCTAGATGGAAAGATCTCTATTCTATATGCCCTCTATATCATATCTATCTGGCGCTCTTAGA
TCTGATAGTCTGCCTATCCCTATCCCGCTTCTATCCAATCCACCTATCCATCTAGAATCTAGATG
GAAAGATGCCGCCCCCCCTCTATATAGATGGGTTATAGGGGCTCGAGATATCCGCCGCCAGATAG
TTCAGGATAGTTCAGAGAGGGGGCCGCCTCTCTATATAGATATTCTATCCGCCGCCAGATAGAGA
AGATAAGATATGATCTGATCTATATAGAGGGGGAGGGGGAGGGGGAGTCTCGAGAGCCCCCCATC
CATATAGAGATAGGGAGATAGGGGTCGCCATCTCTCTATAGATGGATCTCCCAGGCATATGAACA
ATGCCGTCGGCGCGAGTCCCTCCCTCTCCTCGACTGTATAGAGAG
Found at i:187258 original size:12 final size:12
Alignment explanation
Indices: 187241--187269 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
187231 AATCTATGGT
187241 TAGAGTTGGGTA
1 TAGAGTTGGGTA
187253 TAGAGTTGGGTA
1 TAGAGTTGGGTA
187265 TAGAG
1 TAGAG
187270 GCCCGGTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.41, T:0.31
Consensus pattern (12 bp):
TAGAGTTGGGTA
Left flanking sequence: Indices 186741 -- 187240
GATAGTTCAGGGTGAGCGTAGCCCTATCTATATATGGCCTGGCCCCCTCTAGATGGGATTGAGTA
TAGATAGGCCTCCTCCCCCCTCCAGCAGATAGCCAGATAGATCAGATCAGATAAGATCTAGTTGA
GGGGGGGGGGTGGGGGGGGGGGCCGAGTGCCGCCTACTCTACTATGAATGAAGAGTTGCCCTCGC
CTCATCTACAGATAGAGAAGAGATCTGGGCCCATATTCTCTATCTTGATCGGAGCCCCGCCCACT
GTATAGATCTCTTCTCTCCCAAGCAGCCCCCTCTCTGTATTGTAGAGTTTCTGGGCCCGTCGGCG
ATGGGGCATATAGGGTACAGGCCCCTCTATACACCTCGGCCCCTTGGTTCAGGTTTGCTCATGCG
GTTGGTGGCGTTCTCACGAGTCTCGGTTGGCTTATTGGCGTTCTCACCAACCCAACCTCCATCTA
TATAGGCGCCCACTCATGTTACATATAGAATCTAGAATCTATGGT
Right flanking sequence: Indices 187270 -- 187769
GCCCGGTTGGAGGAGTTGGCGCCACCGAAGGCCCCCCGGGGCCCAGGGTCATCCAGGGTCACGAC
CCCCCTTAGATAGATTAGATAGGGGCCCACGGTCTACTAATCTCCTCTCTTGACATGACAGATGG
GCCCTCTCTCTATATTGGTTATCTCCTGACGGATGGGGTGAAGGGTACGACCCCGAGGGGCCCGC
TCCCACCTGCCTTCTCCCCTAGAGTTCTATATGGGCTCTCCTCCCTACTGATCGGCGGCCCCCTC
TCTACTCTCTATATCTTTCTTTCGGAGAAAACGGATGATCCCCCCCCCTCTATATAGATCTGGCA
GATAGGGGCCATCGGCGTCTGCCAGTTCGGGCCGGCCTTCCCCTTCCCGATACCACCGTGCATCC
GTTCACCCCTCTAGAACTATGGGGGGTCTGTCCACCGGTGGATGCGTCACTGTTCTATCTATATA
TCTGTTCAGATATAGGGCCCGGCCTATATAGATATGGATATGGCA
Found at i:187878 original size:12 final size:12
Alignment explanation
Indices: 187857--187886 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
187847 TATAGGCCCC
*
187857 ATAGATAGATAG
1 ATAGAGAGATAG
187869 ATAGAGAGATAG
1 ATAGAGAGATAG
187881 ATAGAG
1 ATAGAG
187887 GGGGCCGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (12 bp):
ATAGAGAGATAG
Left flanking sequence: Indices 187357 -- 187856
GGGCCCACGGTCTACTAATCTCCTCTCTTGACATGACAGATGGGCCCTCTCTCTATATTGGTTAT
CTCCTGACGGATGGGGTGAAGGGTACGACCCCGAGGGGCCCGCTCCCACCTGCCTTCTCCCCTAG
AGTTCTATATGGGCTCTCCTCCCTACTGATCGGCGGCCCCCTCTCTACTCTCTATATCTTTCTTT
CGGAGAAAACGGATGATCCCCCCCCCTCTATATAGATCTGGCAGATAGGGGCCATCGGCGTCTGC
CAGTTCGGGCCGGCCTTCCCCTTCCCGATACCACCGTGCATCCGTTCACCCCTCTAGAACTATGG
GGGGTCTGTCCACCGGTGGATGCGTCACTGTTCTATCTATATATCTGTTCAGATATAGGGCCCGG
CCTATATAGATATGGATATGGCAGTTCATCCAGATATCCCAGCACTGCTCAGCTATGGATTAGGG
TAGGGGCGCCCCATATCCAGATCGGGGGATAGAACTATAGGCCCC
Right flanking sequence: Indices 187887 -- 188386
GGGGCCGGGGCACCACATCATCCATCCATCAGTCGGGTCCCATCAGTCGGTATGTCAGGTCAGGT
CAGGTCAGGTCAGGTCAGGTCTATTATATACTTATACTCTACGTGATACGACTGCCGTGAGTACT
TCCTCGTATCACGTATAGAATAGAAAGAGAGGGCGCCGCTGCGAGCCATATAGCCGAGCCCGATC
GTCCGGGTCCCTCGGACTACCCATCCCTCTCCCGGCGCCCTCTCCCCCCGGCGGTCGAGTGTCAT
GTCATATAGCCGCCCGCGCTGGATCTCCTCCCCCTATCTATCGGCCCGCTCGAGAGGCCCATAGT
TCAGATAGGGGGCCCCCTAGATATCTATATGGCCATCGGTACACATAATATACAGCAGGCCGTCG
GGGGAGTTCCTCACCCTATTGGTTGAGTGCCCCATGTAATGTAGAGAGAGGGGGGCCCTCGATTG
GTAAATCAATCTATCGATCAATCGAGTGCCCCACATCACATAAAG
Found at i:187950 original size:5 final size:5
Alignment explanation
Indices: 187940--187972 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
187930 CAGTCGGTAT
187940 GTCAG GTCAG GTCAG GTCAG GTCAG GTCAG GTC
1 GTCAG GTCAG GTCAG GTCAG GTCAG GTCAG GTC
187973 TATTATATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.39, T:0.21
Consensus pattern (5 bp):
GTCAG
Left flanking sequence: Indices 187440 -- 187939
AAGGGTACGACCCCGAGGGGCCCGCTCCCACCTGCCTTCTCCCCTAGAGTTCTATATGGGCTCTC
CTCCCTACTGATCGGCGGCCCCCTCTCTACTCTCTATATCTTTCTTTCGGAGAAAACGGATGATC
CCCCCCCCTCTATATAGATCTGGCAGATAGGGGCCATCGGCGTCTGCCAGTTCGGGCCGGCCTTC
CCCTTCCCGATACCACCGTGCATCCGTTCACCCCTCTAGAACTATGGGGGGTCTGTCCACCGGTG
GATGCGTCACTGTTCTATCTATATATCTGTTCAGATATAGGGCCCGGCCTATATAGATATGGATA
TGGCAGTTCATCCAGATATCCCAGCACTGCTCAGCTATGGATTAGGGTAGGGGCGCCCCATATCC
AGATCGGGGGATAGAACTATAGGCCCCATAGATAGATAGATAGAGAGATAGATAGAGGGGGCCGG
GGCACCACATCATCCATCCATCAGTCGGGTCCCATCAGTCGGTAT
Right flanking sequence: Indices 187973 -- 188472
TATTATATACTTATACTCTACGTGATACGACTGCCGTGAGTACTTCCTCGTATCACGTATAGAAT
AGAAAGAGAGGGCGCCGCTGCGAGCCATATAGCCGAGCCCGATCGTCCGGGTCCCTCGGACTACC
CATCCCTCTCCCGGCGCCCTCTCCCCCCGGCGGTCGAGTGTCATGTCATATAGCCGCCCGCGCTG
GATCTCCTCCCCCTATCTATCGGCCCGCTCGAGAGGCCCATAGTTCAGATAGGGGGCCCCCTAGA
TATCTATATGGCCATCGGTACACATAATATACAGCAGGCCGTCGGGGGAGTTCCTCACCCTATTG
GTTGAGTGCCCCATGTAATGTAGAGAGAGGGGGGCCCTCGATTGGTAAATCAATCTATCGATCAA
TCGAGTGCCCCACATCACATAAAGAAAAGATAGGGGCGGCTCAATCACCTATCTATAGAGAGGGG
TGCCCCCCCATATATAGATAGACTATAGATAGTTTCCTCCCCCCA
Found at i:188998 original size:23 final size:23
Alignment explanation
Indices: 188972--189018 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
188962 AGTTCGGAGC
188972 GCCCTATAGATCAGATCTATATG
1 GCCCTATAGATCAGATCTATATG
188995 GCCCTATAGATCAGATCTATATG
1 GCCCTATAGATCAGATCTATATG
189018 G
1 G
189019 ACGGGGACGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
GCCCTATAGATCAGATCTATATG
Left flanking sequence: Indices 188472 -- 188971
ACTCTCTCTCTCTCTCTATATAGATATAGATATAGATATATACCTCGTTCCATATCCTGAGCATC
TAGCTAGTCCCGTCGGCGCCCTCCCCTCTCTCTAGATGGGCCCATAGAGAATCTAGTTCAGGGGG
GGGGGCCATATAGAATCTATATAGGGGGGGTGGGGGGGGCCCGACTATAGATAGTCGCCCCGGAT
AGTTCAGGGCGTTGTGAGGTCTATATGGGAAGCTCCAAGTCGTAGGAACCTCGATTCAATTCATA
TTGATCGGTGCGGCCCTCTCTATATATCTGGTTGGAAGGGTCCCCCTATCTATATATGGCTGGCC
CTATCCCTATATAGATAGATATAGGGTCATGTCATGTATAGATAGGGGGAACCTCGATTCAGACG
GAGGTGTTTGTTCGGTTAGTCGAACTAGTCTAGTCCACTAGTCCAGTCATGTTACGTATCTAGTA
GGAACCTCGATTCATACTTTTAGCTCTCTATCTAGAGTTCGGAGC
Right flanking sequence: Indices 189019 -- 189518
ACGGGGACGGTCTCTTCTCTATCTAGAGTTCGGAGCGGACGGTCTCTTCGATTCTATAGATAGGG
CGGCCCATCTATCTATATCTGCGCCTAGAAATATATAGGGCCGACGTGACGGTCCGGGATTCTAT
AGATAGGGCGGATGGATGGATAGGTCCGGGATTCTATAGATAGGGCGGATGGATGGATGGATATG
TGCGGACGGTCTCTTCTCTATCTAGAGTTCGGAGCGCCCATCTATCTATATGGTATGGCAAGGTC
TCTATCGGAGCGATGCGATGCAGACGGTTGGTTGCCCTATAGATCTATCTATATGGCTGATCTAT
ATGGCTGATCTATGTATAGATAGATAGGGCGCAAGCGGCTTATCTATATATAGGTGCCGCGGTTC
GGATAGATAGGGCGCTTCTATCTCATCTCCTCATTAGAGTAGTGTCCCGACCTCTCTAGATATAG
GGTGTCCCGTTCCAATCCCATCAAGAGTTCTCATTAGAGAGAGAT
Found at i:189177 original size:37 final size:37
Alignment explanation
Indices: 189134--189206 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
189124 CCGACGTGAC
189134 GGTCCGGGATTCTATAGATAGGGCGGATGGATGGATA
1 GGTCCGGGATTCTATAGATAGGGCGGATGGATGGATA
189171 GGTCCGGGATTCTATAGATAGGGCGGATGGATGGAT
1 GGTCCGGGATTCTATAGATAGGGCGGATGGATGGAT
189207 GGATATGTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.11, G:0.41, T:0.25
Consensus pattern (37 bp):
GGTCCGGGATTCTATAGATAGGGCGGATGGATGGATA
Left flanking sequence: Indices 188634 -- 189133
GGGGGGGCCCGACTATAGATAGTCGCCCCGGATAGTTCAGGGCGTTGTGAGGTCTATATGGGAAG
CTCCAAGTCGTAGGAACCTCGATTCAATTCATATTGATCGGTGCGGCCCTCTCTATATATCTGGT
TGGAAGGGTCCCCCTATCTATATATGGCTGGCCCTATCCCTATATAGATAGATATAGGGTCATGT
CATGTATAGATAGGGGGAACCTCGATTCAGACGGAGGTGTTTGTTCGGTTAGTCGAACTAGTCTA
GTCCACTAGTCCAGTCATGTTACGTATCTAGTAGGAACCTCGATTCATACTTTTAGCTCTCTATC
TAGAGTTCGGAGCGCCCTATAGATCAGATCTATATGGCCCTATAGATCAGATCTATATGGACGGG
GACGGTCTCTTCTCTATCTAGAGTTCGGAGCGGACGGTCTCTTCGATTCTATAGATAGGGCGGCC
CATCTATCTATATCTGCGCCTAGAAATATATAGGGCCGACGTGAC
Right flanking sequence: Indices 189207 -- 189706
GGATATGTGCGGACGGTCTCTTCTCTATCTAGAGTTCGGAGCGCCCATCTATCTATATGGTATGG
CAAGGTCTCTATCGGAGCGATGCGATGCAGACGGTTGGTTGCCCTATAGATCTATCTATATGGCT
GATCTATATGGCTGATCTATGTATAGATAGATAGGGCGCAAGCGGCTTATCTATATATAGGTGCC
GCGGTTCGGATAGATAGGGCGCTTCTATCTCATCTCCTCATTAGAGTAGTGTCCCGACCTCTCTA
GATATAGGGTGTCCCGTTCCAATCCCATCAAGAGTTCTCATTAGAGAGAGATATGGGTTAGAGTA
GTGTCCCGTTCCAATCCCATCACCATCAATAGTTAGTGTTCAACATGACTCGACTCCCCATATAG
AGATATGGGTTAGAGTAGTGTCCCGTTCCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCC
GGCCCCACCCCTTCCTATCTGTAGTGAAGTGAGTGTCCCGTTCCA
Found at i:189192 original size:20 final size:20
Alignment explanation
Indices: 189134--189192 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
189124 CCGACGTGAC
189134 GGTCCGGGATTCTATAGATA
1 GGTCCGGGATTCTATAGATA
* ** *
189154 GG-GC-GGA-TGGATGGATA
1 GGTCCGGGATTCTATAGATA
189171 GGTCCGGGATTCTATAGATA
1 GGTCCGGGATTCTATAGATA
189191 GG
1 GG
189193 GCGGATGGAT
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 9 0.32
18 4 0.14
19 4 0.14
20 11 0.39
ACGTcount: A:0.24, C:0.12, G:0.39, T:0.25
Consensus pattern (20 bp):
GGTCCGGGATTCTATAGATA
Left flanking sequence: Indices 188634 -- 189133
GGGGGGGCCCGACTATAGATAGTCGCCCCGGATAGTTCAGGGCGTTGTGAGGTCTATATGGGAAG
CTCCAAGTCGTAGGAACCTCGATTCAATTCATATTGATCGGTGCGGCCCTCTCTATATATCTGGT
TGGAAGGGTCCCCCTATCTATATATGGCTGGCCCTATCCCTATATAGATAGATATAGGGTCATGT
CATGTATAGATAGGGGGAACCTCGATTCAGACGGAGGTGTTTGTTCGGTTAGTCGAACTAGTCTA
GTCCACTAGTCCAGTCATGTTACGTATCTAGTAGGAACCTCGATTCATACTTTTAGCTCTCTATC
TAGAGTTCGGAGCGCCCTATAGATCAGATCTATATGGCCCTATAGATCAGATCTATATGGACGGG
GACGGTCTCTTCTCTATCTAGAGTTCGGAGCGGACGGTCTCTTCGATTCTATAGATAGGGCGGCC
CATCTATCTATATCTGCGCCTAGAAATATATAGGGCCGACGTGAC
Right flanking sequence: Indices 189193 -- 189692
GCGGATGGATGGATGGATATGTGCGGACGGTCTCTTCTCTATCTAGAGTTCGGAGCGCCCATCTA
TCTATATGGTATGGCAAGGTCTCTATCGGAGCGATGCGATGCAGACGGTTGGTTGCCCTATAGAT
CTATCTATATGGCTGATCTATATGGCTGATCTATGTATAGATAGATAGGGCGCAAGCGGCTTATC
TATATATAGGTGCCGCGGTTCGGATAGATAGGGCGCTTCTATCTCATCTCCTCATTAGAGTAGTG
TCCCGACCTCTCTAGATATAGGGTGTCCCGTTCCAATCCCATCAAGAGTTCTCATTAGAGAGAGA
TATGGGTTAGAGTAGTGTCCCGTTCCAATCCCATCACCATCAATAGTTAGTGTTCAACATGACTC
GACTCCCCATATAGAGATATGGGTTAGAGTAGTGTCCCGTTCCAATCCCACGGTGAGTTAGTGTT
CAACTCGACTCCCCGGCCCCACCCCTTCCTATCTGTAGTGAAGTG
Found at i:189343 original size:13 final size:13
Alignment explanation
Indices: 189325--189356 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
189315 CTATAGATCT
189325 ATCTATATGGCTG
1 ATCTATATGGCTG
189338 ATCTATATGGCTG
1 ATCTATATGGCTG
189351 ATCTAT
1 ATCTAT
189357 GTATAGATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (13 bp):
ATCTATATGGCTG
Left flanking sequence: Indices 188825 -- 189324
ATGTCATGTATAGATAGGGGGAACCTCGATTCAGACGGAGGTGTTTGTTCGGTTAGTCGAACTAG
TCTAGTCCACTAGTCCAGTCATGTTACGTATCTAGTAGGAACCTCGATTCATACTTTTAGCTCTC
TATCTAGAGTTCGGAGCGCCCTATAGATCAGATCTATATGGCCCTATAGATCAGATCTATATGGA
CGGGGACGGTCTCTTCTCTATCTAGAGTTCGGAGCGGACGGTCTCTTCGATTCTATAGATAGGGC
GGCCCATCTATCTATATCTGCGCCTAGAAATATATAGGGCCGACGTGACGGTCCGGGATTCTATA
GATAGGGCGGATGGATGGATAGGTCCGGGATTCTATAGATAGGGCGGATGGATGGATGGATATGT
GCGGACGGTCTCTTCTCTATCTAGAGTTCGGAGCGCCCATCTATCTATATGGTATGGCAAGGTCT
CTATCGGAGCGATGCGATGCAGACGGTTGGTTGCCCTATAGATCT
Right flanking sequence: Indices 189357 -- 189856
GTATAGATAGATAGGGCGCAAGCGGCTTATCTATATATAGGTGCCGCGGTTCGGATAGATAGGGC
GCTTCTATCTCATCTCCTCATTAGAGTAGTGTCCCGACCTCTCTAGATATAGGGTGTCCCGTTCC
AATCCCATCAAGAGTTCTCATTAGAGAGAGATATGGGTTAGAGTAGTGTCCCGTTCCAATCCCAT
CACCATCAATAGTTAGTGTTCAACATGACTCGACTCCCCATATAGAGATATGGGTTAGAGTAGTG
TCCCGTTCCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCCGGCCCCACCCCTTCCTATCT
GTAGTGAAGTGAGTGTCCCGTTCCAATCCCATCAATCTAGCAAGGCAAGCATGCTAGTCTAGTAT
GGACCTCGCTCTTTCTCGCTAGTCTAGTTGCTAGCTCTTCTCTTTCTCGCTAGTCTAGTATGCTC
GGCAAGCGAGCATGCTAGCTCGGCTCGTCTATCTCGGCAAGCATG
Found at i:189923 original size:22 final size:23
Alignment explanation
Indices: 189892--189953 Score: 99
Period size: 22 Copynumber: 2.7 Consensus size: 23
189882 AGACTCGGGA
*
189892 CTCGGCAAGCATGCTCTTCTAT-
1 CTCGGCAAGCATGCTCGTCTATG
*
189914 CTGGGCAAGCATGCTCGTCTATG
1 CTCGGCAAGCATGCTCGTCTATG
189937 CTCGGCAAGCATGCTCG
1 CTCGGCAAGCATGCTCG
189954 CAAGGCAAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 20 0.56
23 16 0.44
ACGTcount: A:0.18, C:0.31, G:0.26, T:0.26
Consensus pattern (23 bp):
CTCGGCAAGCATGCTCGTCTATG
Left flanking sequence: Indices 189392 -- 189891
TATAGGTGCCGCGGTTCGGATAGATAGGGCGCTTCTATCTCATCTCCTCATTAGAGTAGTGTCCC
GACCTCTCTAGATATAGGGTGTCCCGTTCCAATCCCATCAAGAGTTCTCATTAGAGAGAGATATG
GGTTAGAGTAGTGTCCCGTTCCAATCCCATCACCATCAATAGTTAGTGTTCAACATGACTCGACT
CCCCATATAGAGATATGGGTTAGAGTAGTGTCCCGTTCCAATCCCACGGTGAGTTAGTGTTCAAC
TCGACTCCCCGGCCCCACCCCTTCCTATCTGTAGTGAAGTGAGTGTCCCGTTCCAATCCCATCAA
TCTAGCAAGGCAAGCATGCTAGTCTAGTATGGACCTCGCTCTTTCTCGCTAGTCTAGTTGCTAGC
TCTTCTCTTTCTCGCTAGTCTAGTATGCTCGGCAAGCGAGCATGCTAGCTCGGCTCGTCTATCTC
GGCAAGCATGCTCTGCTCCCATATCTAATCTATATAGACTCGGGA
Right flanking sequence: Indices 189954 -- 190453
CAAGGCAAGCATGCTCGTTGCTAGCTAGGCAAGCTAGCTGGGCAAGCATGCTCGTCTATGCTATG
CTCTATTCTCGGAGAGGATAGTCCCATATCTATCTATCTCTCTCTCTATATCTCTATCTCTCTAT
CTATCTCTCTCTCTCTCTATATCTCTATGGAGGGGGGCACCATATATATGGATAGGGGGCCGTAG
TTGTTGATCGATCTACATGATTATCATGCGATCAATCAGAGTTTGTTACGGCTTGATTCATGTTA
CGTATATAGATTAGATCTAGCCGGGGCTATGGAGAGTATGGCTATTCCGGTGTGACCAGTTTCGC
CAGTGTGACCAGTTTCGCTGATCCGCTTCATATCTGCCCCTCTATCTCTATCTATATGGGGCCTA
TTCAATATAGGGCCCCGGGGGCGGCTAGGCTATATAGACTCGGGGCTCGGCACTCCCCCCCTCTC
TCTATATCTGATCCCATCGGGGGGGGGGGCGAGGGGAGATGAGTC
Found at i:190007 original size:37 final size:37
Alignment explanation
Indices: 189914--190016 Score: 115
Period size: 40 Copynumber: 2.7 Consensus size: 37
189904 GCTCTTCTAT
*
189914 CTGGGCAAGCATGCTCG-TCTATGCTCGGCAAGCATG
1 CTGGGCAAGCATGCTCGTTCTATGCTAGGCAAGCATG
189950 CTCGCAAGGCAAGCATGCTCGTTGCTA-GCTAGGCAAGC-TAG
1 CT-G---GGCAAGCATGCTCGTT-CTATGCTAGGCAAGCAT-G
189991 CTGGGCAAGCATGCTCG-TCTATGCTA
1 CTGGGCAAGCATGCTCGTTCTATGCTA
190017 TGCTCTATTC
Statistics
Matches: 58, Mismatches: 1, Indels: 16
0.77 0.01 0.21
Matches are distributed among these distances:
35 3 0.05
36 7 0.12
37 15 0.26
40 16 0.28
41 14 0.24
42 3 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (37 bp):
CTGGGCAAGCATGCTCGTTCTATGCTAGGCAAGCATG
Left flanking sequence: Indices 189414 -- 189913
GATAGGGCGCTTCTATCTCATCTCCTCATTAGAGTAGTGTCCCGACCTCTCTAGATATAGGGTGT
CCCGTTCCAATCCCATCAAGAGTTCTCATTAGAGAGAGATATGGGTTAGAGTAGTGTCCCGTTCC
AATCCCATCACCATCAATAGTTAGTGTTCAACATGACTCGACTCCCCATATAGAGATATGGGTTA
GAGTAGTGTCCCGTTCCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCCGGCCCCACCCCT
TCCTATCTGTAGTGAAGTGAGTGTCCCGTTCCAATCCCATCAATCTAGCAAGGCAAGCATGCTAG
TCTAGTATGGACCTCGCTCTTTCTCGCTAGTCTAGTTGCTAGCTCTTCTCTTTCTCGCTAGTCTA
GTATGCTCGGCAAGCGAGCATGCTAGCTCGGCTCGTCTATCTCGGCAAGCATGCTCTGCTCCCAT
ATCTAATCTATATAGACTCGGGACTCGGCAAGCATGCTCTTCTAT
Right flanking sequence: Indices 190017 -- 190516
TGCTCTATTCTCGGAGAGGATAGTCCCATATCTATCTATCTCTCTCTCTATATCTCTATCTCTCT
ATCTATCTCTCTCTCTCTCTATATCTCTATGGAGGGGGGCACCATATATATGGATAGGGGGCCGT
AGTTGTTGATCGATCTACATGATTATCATGCGATCAATCAGAGTTTGTTACGGCTTGATTCATGT
TACGTATATAGATTAGATCTAGCCGGGGCTATGGAGAGTATGGCTATTCCGGTGTGACCAGTTTC
GCCAGTGTGACCAGTTTCGCTGATCCGCTTCATATCTGCCCCTCTATCTCTATCTATATGGGGCC
TATTCAATATAGGGCCCCGGGGGCGGCTAGGCTATATAGACTCGGGGCTCGGCACTCCCCCCCTC
TCTCTATATCTGATCCCATCGGGGGGGGGGGCGAGGGGAGATGAGTCGGGCCTATATATAGATAA
GGCATCTCATCTATATGGCAAGCACCTATGGATCTATATGGCCAC
Found at i:190076 original size:20 final size:20
Alignment explanation
Indices: 190051--190111 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
190041 CCCATATCTA
190051 TCTATCTCTCTCTCTATATC
1 TCTATCTCTCTCTCTATATC
*
190071 TCTATCTCTCTATC--TATC
1 TCTATCTCTCTCTCTATATC
190089 TC--TCTCTCTCTCTATATC
1 TCTATCTCTCTCTCTATATC
190107 TCTAT
1 TCTAT
190112 GGAGGGGGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 9 0.26
18 12 0.34
20 14 0.40
ACGTcount: A:0.15, C:0.34, G:0.00, T:0.51
Consensus pattern (20 bp):
TCTATCTCTCTCTCTATATC
Left flanking sequence: Indices 189551 -- 190050
TCACCATCAATAGTTAGTGTTCAACATGACTCGACTCCCCATATAGAGATATGGGTTAGAGTAGT
GTCCCGTTCCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCCGGCCCCACCCCTTCCTATC
TGTAGTGAAGTGAGTGTCCCGTTCCAATCCCATCAATCTAGCAAGGCAAGCATGCTAGTCTAGTA
TGGACCTCGCTCTTTCTCGCTAGTCTAGTTGCTAGCTCTTCTCTTTCTCGCTAGTCTAGTATGCT
CGGCAAGCGAGCATGCTAGCTCGGCTCGTCTATCTCGGCAAGCATGCTCTGCTCCCATATCTAAT
CTATATAGACTCGGGACTCGGCAAGCATGCTCTTCTATCTGGGCAAGCATGCTCGTCTATGCTCG
GCAAGCATGCTCGCAAGGCAAGCATGCTCGTTGCTAGCTAGGCAAGCTAGCTGGGCAAGCATGCT
CGTCTATGCTATGCTCTATTCTCGGAGAGGATAGTCCCATATCTA
Right flanking sequence: Indices 190112 -- 190611
GGAGGGGGGCACCATATATATGGATAGGGGGCCGTAGTTGTTGATCGATCTACATGATTATCATG
CGATCAATCAGAGTTTGTTACGGCTTGATTCATGTTACGTATATAGATTAGATCTAGCCGGGGCT
ATGGAGAGTATGGCTATTCCGGTGTGACCAGTTTCGCCAGTGTGACCAGTTTCGCTGATCCGCTT
CATATCTGCCCCTCTATCTCTATCTATATGGGGCCTATTCAATATAGGGCCCCGGGGGCGGCTAG
GCTATATAGACTCGGGGCTCGGCACTCCCCCCCTCTCTCTATATCTGATCCCATCGGGGGGGGGG
GCGAGGGGAGATGAGTCGGGCCTATATATAGATAAGGCATCTCATCTATATGGCAAGCACCTATG
GATCTATATGGCCACATCCGAGATCAGATCAAACCCCCCGATGGCGGCTCCCAGATCTATATAGG
GGGGGGGAGAGATAGAGAGGGGGGCCTAGCCGGGGCACCACATCA
Found at i:190078 original size:16 final size:16
Alignment explanation
Indices: 190059--190111 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 16
190049 TATCTATCTC
190059 TCTCTCTATATCTCTA
1 TCTCTCTATATCTCTA
*
190075 TCTCTCTATCTATCTCTCTC
1 TCTCTCTA--TA--TCTCTA
190095 TCTCTCTATATCTCTA
1 TCTCTCTATATCTCTA
190111 T
1 T
190112 GGAGGGGGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
16 14 0.45
18 4 0.13
20 13 0.42
ACGTcount: A:0.15, C:0.34, G:0.00, T:0.51
Consensus pattern (16 bp):
TCTCTCTATATCTCTA
Left flanking sequence: Indices 189559 -- 190058
AATAGTTAGTGTTCAACATGACTCGACTCCCCATATAGAGATATGGGTTAGAGTAGTGTCCCGTT
CCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCCGGCCCCACCCCTTCCTATCTGTAGTGA
AGTGAGTGTCCCGTTCCAATCCCATCAATCTAGCAAGGCAAGCATGCTAGTCTAGTATGGACCTC
GCTCTTTCTCGCTAGTCTAGTTGCTAGCTCTTCTCTTTCTCGCTAGTCTAGTATGCTCGGCAAGC
GAGCATGCTAGCTCGGCTCGTCTATCTCGGCAAGCATGCTCTGCTCCCATATCTAATCTATATAG
ACTCGGGACTCGGCAAGCATGCTCTTCTATCTGGGCAAGCATGCTCGTCTATGCTCGGCAAGCAT
GCTCGCAAGGCAAGCATGCTCGTTGCTAGCTAGGCAAGCTAGCTGGGCAAGCATGCTCGTCTATG
CTATGCTCTATTCTCGGAGAGGATAGTCCCATATCTATCTATCTC
Right flanking sequence: Indices 190112 -- 190611
GGAGGGGGGCACCATATATATGGATAGGGGGCCGTAGTTGTTGATCGATCTACATGATTATCATG
CGATCAATCAGAGTTTGTTACGGCTTGATTCATGTTACGTATATAGATTAGATCTAGCCGGGGCT
ATGGAGAGTATGGCTATTCCGGTGTGACCAGTTTCGCCAGTGTGACCAGTTTCGCTGATCCGCTT
CATATCTGCCCCTCTATCTCTATCTATATGGGGCCTATTCAATATAGGGCCCCGGGGGCGGCTAG
GCTATATAGACTCGGGGCTCGGCACTCCCCCCCTCTCTCTATATCTGATCCCATCGGGGGGGGGG
GCGAGGGGAGATGAGTCGGGCCTATATATAGATAAGGCATCTCATCTATATGGCAAGCACCTATG
GATCTATATGGCCACATCCGAGATCAGATCAAACCCCCCGATGGCGGCTCCCAGATCTATATAGG
GGGGGGGAGAGATAGAGAGGGGGGCCTAGCCGGGGCACCACATCA
Found at i:190078 original size:18 final size:18
Alignment explanation
Indices: 190057--190111 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
190047 TCTATCTATC
190057 TCTCTCTCTATATCTCTA
1 TCTCTCTCTATATCTCTA
* * *
190075 TCTCTCTATCTATCTCTC
1 TCTCTCTCTATATCTCTA
190093 TCTCTCTCTATATCTCTA
1 TCTCTCTCTATATCTCTA
190111 T
1 T
190112 GGAGGGGGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.15, C:0.35, G:0.00, T:0.51
Consensus pattern (18 bp):
TCTCTCTCTATATCTCTA
Left flanking sequence: Indices 189557 -- 190056
TCAATAGTTAGTGTTCAACATGACTCGACTCCCCATATAGAGATATGGGTTAGAGTAGTGTCCCG
TTCCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCCGGCCCCACCCCTTCCTATCTGTAGT
GAAGTGAGTGTCCCGTTCCAATCCCATCAATCTAGCAAGGCAAGCATGCTAGTCTAGTATGGACC
TCGCTCTTTCTCGCTAGTCTAGTTGCTAGCTCTTCTCTTTCTCGCTAGTCTAGTATGCTCGGCAA
GCGAGCATGCTAGCTCGGCTCGTCTATCTCGGCAAGCATGCTCTGCTCCCATATCTAATCTATAT
AGACTCGGGACTCGGCAAGCATGCTCTTCTATCTGGGCAAGCATGCTCGTCTATGCTCGGCAAGC
ATGCTCGCAAGGCAAGCATGCTCGTTGCTAGCTAGGCAAGCTAGCTGGGCAAGCATGCTCGTCTA
TGCTATGCTCTATTCTCGGAGAGGATAGTCCCATATCTATCTATC
Right flanking sequence: Indices 190112 -- 190611
GGAGGGGGGCACCATATATATGGATAGGGGGCCGTAGTTGTTGATCGATCTACATGATTATCATG
CGATCAATCAGAGTTTGTTACGGCTTGATTCATGTTACGTATATAGATTAGATCTAGCCGGGGCT
ATGGAGAGTATGGCTATTCCGGTGTGACCAGTTTCGCCAGTGTGACCAGTTTCGCTGATCCGCTT
CATATCTGCCCCTCTATCTCTATCTATATGGGGCCTATTCAATATAGGGCCCCGGGGGCGGCTAG
GCTATATAGACTCGGGGCTCGGCACTCCCCCCCTCTCTCTATATCTGATCCCATCGGGGGGGGGG
GCGAGGGGAGATGAGTCGGGCCTATATATAGATAAGGCATCTCATCTATATGGCAAGCACCTATG
GATCTATATGGCCACATCCGAGATCAGATCAAACCCCCCGATGGCGGCTCCCAGATCTATATAGG
GGGGGGGAGAGATAGAGAGGGGGGCCTAGCCGGGGCACCACATCA
Found at i:190094 original size:14 final size:14
Alignment explanation
Indices: 190051--190111 Score: 68
Period size: 14 Copynumber: 4.4 Consensus size: 14
190041 CCCATATCTA
190051 TCTATCTCTCTCTC
1 TCTATCTCTCTCTC
* *
190065 TATATCTCTATCTC
1 TCTATCTCTCTCTC
*
190079 TCTATCTATCTCTC
1 TCTATCTCTCTCTC
* * *
190093 TCTCTCTCTATATC
1 TCTATCTCTCTCTC
190107 TCTAT
1 TCTAT
190112 GGAGGGGGGC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.15, C:0.34, G:0.00, T:0.51
Consensus pattern (14 bp):
TCTATCTCTCTCTC
Left flanking sequence: Indices 189551 -- 190050
TCACCATCAATAGTTAGTGTTCAACATGACTCGACTCCCCATATAGAGATATGGGTTAGAGTAGT
GTCCCGTTCCAATCCCACGGTGAGTTAGTGTTCAACTCGACTCCCCGGCCCCACCCCTTCCTATC
TGTAGTGAAGTGAGTGTCCCGTTCCAATCCCATCAATCTAGCAAGGCAAGCATGCTAGTCTAGTA
TGGACCTCGCTCTTTCTCGCTAGTCTAGTTGCTAGCTCTTCTCTTTCTCGCTAGTCTAGTATGCT
CGGCAAGCGAGCATGCTAGCTCGGCTCGTCTATCTCGGCAAGCATGCTCTGCTCCCATATCTAAT
CTATATAGACTCGGGACTCGGCAAGCATGCTCTTCTATCTGGGCAAGCATGCTCGTCTATGCTCG
GCAAGCATGCTCGCAAGGCAAGCATGCTCGTTGCTAGCTAGGCAAGCTAGCTGGGCAAGCATGCT
CGTCTATGCTATGCTCTATTCTCGGAGAGGATAGTCCCATATCTA
Right flanking sequence: Indices 190112 -- 190611
GGAGGGGGGCACCATATATATGGATAGGGGGCCGTAGTTGTTGATCGATCTACATGATTATCATG
CGATCAATCAGAGTTTGTTACGGCTTGATTCATGTTACGTATATAGATTAGATCTAGCCGGGGCT
ATGGAGAGTATGGCTATTCCGGTGTGACCAGTTTCGCCAGTGTGACCAGTTTCGCTGATCCGCTT
CATATCTGCCCCTCTATCTCTATCTATATGGGGCCTATTCAATATAGGGCCCCGGGGGCGGCTAG
GCTATATAGACTCGGGGCTCGGCACTCCCCCCCTCTCTCTATATCTGATCCCATCGGGGGGGGGG
GCGAGGGGAGATGAGTCGGGCCTATATATAGATAAGGCATCTCATCTATATGGCAAGCACCTATG
GATCTATATGGCCACATCCGAGATCAGATCAAACCCCCCGATGGCGGCTCCCAGATCTATATAGG
GGGGGGGAGAGATAGAGAGGGGGGCCTAGCCGGGGCACCACATCA
Found at i:190851 original size:6 final size:6
Alignment explanation
Indices: 190840--190885 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
190830 AGCTGGGCCA
190840 ACTAGT ACTAGT ACTAGT ACTAGT ACTAGT ACTAGT ACTAGT ACTA
1 ACTAGT ACTAGT ACTAGT ACTAGT ACTAGT ACTAGT ACTAGT ACTA
190886 TGGGCCAACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (6 bp):
ACTAGT
Left flanking sequence: Indices 190340 -- 190839
CCTATTCAATATAGGGCCCCGGGGGCGGCTAGGCTATATAGACTCGGGGCTCGGCACTCCCCCCC
TCTCTCTATATCTGATCCCATCGGGGGGGGGGGCGAGGGGAGATGAGTCGGGCCTATATATAGAT
AAGGCATCTCATCTATATGGCAAGCACCTATGGATCTATATGGCCACATCCGAGATCAGATCAAA
CCCCCCGATGGCGGCTCCCAGATCTATATAGGGGGGGGGAGAGATAGAGAGGGGGGCCTAGCCGG
GGCACCACATCATCCATCAGTCGGTCTATAGAGTATCCCCCTATCTATATGAGGATGGGAGTTCA
GCATTCCAACCTCTCTCTATCTATCTATAGTTGCCATATCTATGATATGAGAGCGGCTATCTCTG
TCCTCAGCATAAACACAAAGATAAGGGCAATCGGGTCCTCAGCATAAAGAATCTCTCTCTCTGGG
GGGTCCTCGGCATAGCGATAGCAGCCTATCTATATAGCTGGGCCA
Right flanking sequence: Indices 190886 -- 191385
TGGGCCAACGGGAGAGGGGCACCATATCTAGATAGGGGCCCTCGCTCTCATCTCCCCTCAAGCTC
GCTCCTATCTATATATGGGGCGAGGGGTACTAGTTCGATCTATAGAGTTGGGAGTAGAAAGAACT
GGGGGGAGGGCGGCTATGGCTTCTGTATAGTCAGTTGGCACTCCCCCGCCCTTCTCTCTCGGTGG
TCAGCCCGGATGCGTGCGCCCCTATATCTATATGGATGGGGCCCCCCTATCCTCTTTACAGACGA
AGCACCCCTATATAGAGATCTGGGGCGGGGTCCCTATATTCTATCTATCTACCGTGGGCGCCTAT
ATATATATATAGATCTGGGGCGGGGCCCTATCTATATATATCTGCCCGCAGAGGATGCACCCCAC
CCACCTATCTAGCGGGGTCCCTATATTCTATCTACCGTGGGTGGGGTAAGCGCCCGCAGGGGAAG
CACCCCCCATATATAGATAGCTCCACCCGTCACCCGAAACACCCA
Found at i:191633 original size:5 final size:5
Alignment explanation
Indices: 191623--191660 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
191613 ATAGATAGGG
191623 CCCCA CCCCA CCCCA CCCCA CCCCA CCCCA CCCCA CCC
1 CCCCA CCCCA CCCCA CCCCA CCCCA CCCCA CCCCA CCC
191661 AATATATCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.18, C:0.82, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCCA
Left flanking sequence: Indices 191123 -- 191622
CCCCCTATCCTCTTTACAGACGAAGCACCCCTATATAGAGATCTGGGGCGGGGTCCCTATATTCT
ATCTATCTACCGTGGGCGCCTATATATATATATAGATCTGGGGCGGGGCCCTATCTATATATATC
TGCCCGCAGAGGATGCACCCCACCCACCTATCTAGCGGGGTCCCTATATTCTATCTACCGTGGGT
GGGGTAAGCGCCCGCAGGGGAAGCACCCCCCATATATAGATAGCTCCACCCGTCACCCGAAACAC
CCACCCAACACCCCCCTATCCTCTTTACATACGCGGGGCCCCTATATAGATCTGGGGAAGGGGGG
GATCCGGCCTATATCTATCTAGATGGGGATCGGCATCGTCTTCCTCAGATAGATATAGATTATGA
TAGATCTAGATGGATTCTGAGTTAGAGTTCTAGTTCAATCCCCACTCTCTCTAGTCTATACTCTA
TAGATAGGGGCGGATTCGTATGGGGGCAGATCTATATAGATAGGG
Right flanking sequence: Indices 191661 -- 192160
AATATATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTA
ATCCCAGTTGGCCATATATCTAATCTAATCTAATCTAATCCCAGTTGGGTTGGGCCCCTCTCTAC
TCTACTCTCTATATGGGGTGGGGGTTGGCTCTAGATATCGTATCGAAGTTGGAGACTATATAGAT
ATATCAGCGAAGTCCAGCTCCATACTCCATATATATGGGATGGGATGGGATGGGATGGGCCACAC
CAATCTGAGAACCCTTACCATATCTCTATAGAGGGGGCCATCTATCTATATCAGGGGTCGAGCAC
CACATCCATCCCCCCGATAGGGGAGATAGGGGCATATATCACTATAGGGGCCCGATAAGCTGAGC
GCCCCATATCTATATAACACTGACAGCTAAGCCAATGCCCCAGATCAGAAAGAATCGGGTCGGGT
CGCATGCCCCGGCCAGCCGTATAGAGATAGGGGAGATAGGGGTCT
Found at i:191674 original size:5 final size:5
Alignment explanation
Indices: 191666--191728 Score: 126
Period size: 5 Copynumber: 12.6 Consensus size: 5
191656 CACCCAATAT
191666 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
191716 ATCTA ATCTA ATC
1 ATCTA ATCTA ATC
191729 CCAGTTGGCC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 58 1.00
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.40
Consensus pattern (5 bp):
ATCTA
Left flanking sequence: Indices 191166 -- 191665
TGGGGCGGGGTCCCTATATTCTATCTATCTACCGTGGGCGCCTATATATATATATAGATCTGGGG
CGGGGCCCTATCTATATATATCTGCCCGCAGAGGATGCACCCCACCCACCTATCTAGCGGGGTCC
CTATATTCTATCTACCGTGGGTGGGGTAAGCGCCCGCAGGGGAAGCACCCCCCATATATAGATAG
CTCCACCCGTCACCCGAAACACCCACCCAACACCCCCCTATCCTCTTTACATACGCGGGGCCCCT
ATATAGATCTGGGGAAGGGGGGGATCCGGCCTATATCTATCTAGATGGGGATCGGCATCGTCTTC
CTCAGATAGATATAGATTATGATAGATCTAGATGGATTCTGAGTTAGAGTTCTAGTTCAATCCCC
ACTCTCTCTAGTCTATACTCTATAGATAGGGGCGGATTCGTATGGGGGCAGATCTATATAGATAG
GGCCCCACCCCACCCCACCCCACCCCACCCCACCCCACCCAATAT
Right flanking sequence: Indices 191729 -- 192228
CCAGTTGGCCATATATCTAATCTAATCTAATCTAATCCCAGTTGGGTTGGGCCCCTCTCTACTCT
ACTCTCTATATGGGGTGGGGGTTGGCTCTAGATATCGTATCGAAGTTGGAGACTATATAGATATA
TCAGCGAAGTCCAGCTCCATACTCCATATATATGGGATGGGATGGGATGGGATGGGCCACACCAA
TCTGAGAACCCTTACCATATCTCTATAGAGGGGGCCATCTATCTATATCAGGGGTCGAGCACCAC
ATCCATCCCCCCGATAGGGGAGATAGGGGCATATATCACTATAGGGGCCCGATAAGCTGAGCGCC
CCATATCTATATAACACTGACAGCTAAGCCAATGCCCCAGATCAGAAAGAATCGGGTCGGGTCGC
ATGCCCCGGCCAGCCGTATAGAGATAGGGGAGATAGGGGTCTAACAATCCCATATAGAGAGTGTA
GTGGGGGGTCTCGACGTTGATACAGATATCTAGGGAGGGTGCCTG
Found at i:191900 original size:5 final size:5
Alignment explanation
Indices: 191890--191914 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
191880 CTCCATATAT
191890 ATGGG ATGGG ATGGG ATGGG ATGGG
1 ATGGG ATGGG ATGGG ATGGG ATGGG
191915 CCACACCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.60, T:0.20
Consensus pattern (5 bp):
ATGGG
Left flanking sequence: Indices 191390 -- 191889
ACACCCCCCTATCCTCTTTACATACGCGGGGCCCCTATATAGATCTGGGGAAGGGGGGGATCCGG
CCTATATCTATCTAGATGGGGATCGGCATCGTCTTCCTCAGATAGATATAGATTATGATAGATCT
AGATGGATTCTGAGTTAGAGTTCTAGTTCAATCCCCACTCTCTCTAGTCTATACTCTATAGATAG
GGGCGGATTCGTATGGGGGCAGATCTATATAGATAGGGCCCCACCCCACCCCACCCCACCCCACC
CCACCCCACCCAATATATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCT
AATCTAATCTAATCCCAGTTGGCCATATATCTAATCTAATCTAATCTAATCCCAGTTGGGTTGGG
CCCCTCTCTACTCTACTCTCTATATGGGGTGGGGGTTGGCTCTAGATATCGTATCGAAGTTGGAG
ACTATATAGATATATCAGCGAAGTCCAGCTCCATACTCCATATAT
Right flanking sequence: Indices 191915 -- 192414
CCACACCAATCTGAGAACCCTTACCATATCTCTATAGAGGGGGCCATCTATCTATATCAGGGGTC
GAGCACCACATCCATCCCCCCGATAGGGGAGATAGGGGCATATATCACTATAGGGGCCCGATAAG
CTGAGCGCCCCATATCTATATAACACTGACAGCTAAGCCAATGCCCCAGATCAGAAAGAATCGGG
TCGGGTCGCATGCCCCGGCCAGCCGTATAGAGATAGGGGAGATAGGGGTCTAACAATCCCATATA
GAGAGTGTAGTGGGGGGTCTCGACGTTGATACAGATATCTAGGGAGGGTGCCTGCCGACTAGATC
TAGAACTCTAGATGCATGCCGTCGCTATATAGAGATGTAGAGGGTGCCCGACTAAACTATATACA
TAGCCCAGATAGATTTCTCTCCTCACACCCCCTATATATAGATATGGCCATCGCCATATATCCGT
AGAAAGGGCGAGTGCCCCCCCATATCTAGACTAGATAGGGGTCGC
Found at i:192622 original size:4 final size:4
Alignment explanation
Indices: 192613--192677 Score: 53
Period size: 4 Copynumber: 16.8 Consensus size: 4
192603 AGATGGAAAG
* * * *
192613 AGAT AGAT AGAG AGAG AGAT AGAT AGAA AGAT AGAG AGAT AG-- AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT AGAT
* * *
192659 ATAG AGAG AGAT AGAT AGA
1 AGAT AGAT AGAT AGAT AGA
192678 GGGGCCCCCC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
2 2 0.04
4 47 0.96
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.15
Consensus pattern (4 bp):
AGAT
Left flanking sequence: Indices 192113 -- 192612
GGTCGCATGCCCCGGCCAGCCGTATAGAGATAGGGGAGATAGGGGTCTAACAATCCCATATAGAG
AGTGTAGTGGGGGGTCTCGACGTTGATACAGATATCTAGGGAGGGTGCCTGCCGACTAGATCTAG
AACTCTAGATGCATGCCGTCGCTATATAGAGATGTAGAGGGTGCCCGACTAAACTATATACATAG
CCCAGATAGATTTCTCTCCTCACACCCCCTATATATAGATATGGCCATCGCCATATATCCGTAGA
AAGGGCGAGTGCCCCCCCATATCTAGACTAGATAGGGGTCGCCATCTATCTCTATGAGCTAGCAA
CTGATCTTCCGGAGCGATCTCCCATATAGATCATATCTTCCAACTGATGGAGCACTGATGGCCAT
ATATCTCTATAGGGCAACTGACCGGAGAGTTTGAATCTATATTGTATTGGCCCTATCTGAACTAT
CTGGGGCCCCTCTCTATATAGGCACCGGACTCTCAAGATGGAAAG
Right flanking sequence: Indices 192678 -- 193177
GGGGCCCCCCTTCTCTATAGAGGGGAACTCTAGGGTGCCCCGGCCGCTGGCCGGGGCAGATCTAT
ATAGGGGCGTCAGTCGAGTGCCTCTCCCCTCTATATATAGATGGCGGCCCCCCCATAGATAGAGA
GATAGGCATATAGATAAGATAGTTCAGGGAGGGGGGGGGCCCTCTATATCTTATCTATATGGCGG
TCGAGCCGTCCATCCTCCATCCATTCTATCCAAAGGAGTGATACCAGTCATATAGACTATATACT
CTATACGTGATACAACGTGATATGAGTCATTCGTATCACGTATATAATAGAGGATAGGATATAGA
ATAATAGAAGGATGATGTGGTGATGAATGAGACCAGTCGGATGAGTGAGACCAGTCATCAGTCGT
ATCATCTCATCCATTATTCTATTCTCTATAGACATGAGTGATGACTGATATCAGTCGTATCACGT
CTATAATGGATGACGATGTGTGATGGATAGATGTATGATGGATAG
Found at i:192632 original size:16 final size:16
Alignment explanation
Indices: 192611--192678 Score: 73
Period size: 16 Copynumber: 3.9 Consensus size: 16
192601 CAAGATGGAA
192611 AGAGATAGATAGAGAG
1 AGAGATAGATAGAGAG
192627 AGAGATAGATAGAAAGATAG
1 AGAGATAGATAG--AG--AG
*
192647 AGAGATAGAGATATAGAG
1 AGAGAT--AGATAGAGAG
192665 AGAGATAGATAGAG
1 AGAGATAGATAGAG
192679 GGGCCCCCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
16 19 0.43
18 10 0.23
20 10 0.23
22 5 0.11
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.15
Consensus pattern (16 bp):
AGAGATAGATAGAGAG
Left flanking sequence: Indices 192111 -- 192610
CGGGTCGCATGCCCCGGCCAGCCGTATAGAGATAGGGGAGATAGGGGTCTAACAATCCCATATAG
AGAGTGTAGTGGGGGGTCTCGACGTTGATACAGATATCTAGGGAGGGTGCCTGCCGACTAGATCT
AGAACTCTAGATGCATGCCGTCGCTATATAGAGATGTAGAGGGTGCCCGACTAAACTATATACAT
AGCCCAGATAGATTTCTCTCCTCACACCCCCTATATATAGATATGGCCATCGCCATATATCCGTA
GAAAGGGCGAGTGCCCCCCCATATCTAGACTAGATAGGGGTCGCCATCTATCTCTATGAGCTAGC
AACTGATCTTCCGGAGCGATCTCCCATATAGATCATATCTTCCAACTGATGGAGCACTGATGGCC
ATATATCTCTATAGGGCAACTGACCGGAGAGTTTGAATCTATATTGTATTGGCCCTATCTGAACT
ATCTGGGGCCCCTCTCTATATAGGCACCGGACTCTCAAGATGGAA
Right flanking sequence: Indices 192679 -- 193178
GGGCCCCCCTTCTCTATAGAGGGGAACTCTAGGGTGCCCCGGCCGCTGGCCGGGGCAGATCTATA
TAGGGGCGTCAGTCGAGTGCCTCTCCCCTCTATATATAGATGGCGGCCCCCCCATAGATAGAGAG
ATAGGCATATAGATAAGATAGTTCAGGGAGGGGGGGGGCCCTCTATATCTTATCTATATGGCGGT
CGAGCCGTCCATCCTCCATCCATTCTATCCAAAGGAGTGATACCAGTCATATAGACTATATACTC
TATACGTGATACAACGTGATATGAGTCATTCGTATCACGTATATAATAGAGGATAGGATATAGAA
TAATAGAAGGATGATGTGGTGATGAATGAGACCAGTCGGATGAGTGAGACCAGTCATCAGTCGTA
TCATCTCATCCATTATTCTATTCTCTATAGACATGAGTGATGACTGATATCAGTCGTATCACGTC
TATAATGGATGACGATGTGTGATGGATAGATGTATGATGGATAGA
Found at i:192646 original size:8 final size:8
Alignment explanation
Indices: 192617--192667 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
192607 GGAAAGAGAT
192617 AGATAGAG
1 AGATAGAG
* *
192625 AGAGAGAT
1 AGATAGAG
*
192633 AGATAGAA
1 AGATAGAG
192641 AGATAGAG
1 AGATAGAG
192649 AGATAGAG
1 AGATAGAG
*
192657 ATATAGAG
1 AGATAGAG
192665 AGA
1 AGA
192668 GATAGATAGA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.33, T:0.14
Consensus pattern (8 bp):
AGATAGAG
Left flanking sequence: Indices 192117 -- 192616
GCATGCCCCGGCCAGCCGTATAGAGATAGGGGAGATAGGGGTCTAACAATCCCATATAGAGAGTG
TAGTGGGGGGTCTCGACGTTGATACAGATATCTAGGGAGGGTGCCTGCCGACTAGATCTAGAACT
CTAGATGCATGCCGTCGCTATATAGAGATGTAGAGGGTGCCCGACTAAACTATATACATAGCCCA
GATAGATTTCTCTCCTCACACCCCCTATATATAGATATGGCCATCGCCATATATCCGTAGAAAGG
GCGAGTGCCCCCCCATATCTAGACTAGATAGGGGTCGCCATCTATCTCTATGAGCTAGCAACTGA
TCTTCCGGAGCGATCTCCCATATAGATCATATCTTCCAACTGATGGAGCACTGATGGCCATATAT
CTCTATAGGGCAACTGACCGGAGAGTTTGAATCTATATTGTATTGGCCCTATCTGAACTATCTGG
GGCCCCTCTCTATATAGGCACCGGACTCTCAAGATGGAAAGAGAT
Right flanking sequence: Indices 192668 -- 193167
GATAGATAGAGGGGCCCCCCTTCTCTATAGAGGGGAACTCTAGGGTGCCCCGGCCGCTGGCCGGG
GCAGATCTATATAGGGGCGTCAGTCGAGTGCCTCTCCCCTCTATATATAGATGGCGGCCCCCCCA
TAGATAGAGAGATAGGCATATAGATAAGATAGTTCAGGGAGGGGGGGGGCCCTCTATATCTTATC
TATATGGCGGTCGAGCCGTCCATCCTCCATCCATTCTATCCAAAGGAGTGATACCAGTCATATAG
ACTATATACTCTATACGTGATACAACGTGATATGAGTCATTCGTATCACGTATATAATAGAGGAT
AGGATATAGAATAATAGAAGGATGATGTGGTGATGAATGAGACCAGTCGGATGAGTGAGACCAGT
CATCAGTCGTATCATCTCATCCATTATTCTATTCTCTATAGACATGAGTGATGACTGATATCAGT
CGTATCACGTCTATAATGGATGACGATGTGTGATGGATAGATGTA
Found at i:193051 original size:18 final size:18
Alignment explanation
Indices: 193024--193058 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
193014 ATGATGTGGT
193024 GATGAATGAGACCAGTCG
1 GATGAATGAGACCAGTCG
*
193042 GATGAGTGAGACCAGTC
1 GATGAATGAGACCAGTC
193059 ATCAGTCGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.34, T:0.17
Consensus pattern (18 bp):
GATGAATGAGACCAGTCG
Left flanking sequence: Indices 192524 -- 193023
CCGGAGAGTTTGAATCTATATTGTATTGGCCCTATCTGAACTATCTGGGGCCCCTCTCTATATAG
GCACCGGACTCTCAAGATGGAAAGAGATAGATAGAGAGAGAGATAGATAGAAAGATAGAGAGATA
GAGATATAGAGAGAGATAGATAGAGGGGCCCCCCTTCTCTATAGAGGGGAACTCTAGGGTGCCCC
GGCCGCTGGCCGGGGCAGATCTATATAGGGGCGTCAGTCGAGTGCCTCTCCCCTCTATATATAGA
TGGCGGCCCCCCCATAGATAGAGAGATAGGCATATAGATAAGATAGTTCAGGGAGGGGGGGGGCC
CTCTATATCTTATCTATATGGCGGTCGAGCCGTCCATCCTCCATCCATTCTATCCAAAGGAGTGA
TACCAGTCATATAGACTATATACTCTATACGTGATACAACGTGATATGAGTCATTCGTATCACGT
ATATAATAGAGGATAGGATATAGAATAATAGAAGGATGATGTGGT
Right flanking sequence: Indices 193059 -- 193558
ATCAGTCGTATCATCTCATCCATTATTCTATTCTCTATAGACATGAGTGATGACTGATATCAGTC
GTATCACGTCTATAATGGATGACGATGTGTGATGGATAGATGTATGATGGATAGATATCTTGTCC
TACTATCCCGCTCGTTTTCTGCTTAACCCAACCCAATCACAGGCCGCTCCACCCCATACATAGAT
ATGGCGCCCCCCCCCCTGATTCCTGGTCGCCCCCATATTCGATTTCATGTATTCACTCATAGCAT
CGTCGCCCTTGCCCGGTAGTCCCGTAGCGGGTGCTTTCGGACGTTTTCCAGGTTCGGAAGGAACC
GCCATAGTAACCACCACGTGCGTTTCATTATCTCCTATCTCATCCTTGACTGCTTCTCATGAGGT
CGCACCGGGAGCTAGTGCTTGCTATCCAAAAATTGCTCCATGGATCTCATCCGAAATGTTTGATG
CCTCTCGGGGCTTCTTTGGCGACCGTGAAGTCACCGGAACGAGTA
Found at i:193171 original size:15 final size:15
Alignment explanation
Indices: 193147--193179 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
193137 AATGGATGAC
*
193147 GATGTGTGATGGATA
1 GATGTATGATGGATA
193162 GATGTATGATGGATA
1 GATGTATGATGGATA
193177 GAT
1 GAT
193180 ATCTTGTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (15 bp):
GATGTATGATGGATA
Left flanking sequence: Indices 192647 -- 193146
AGAGATAGAGATATAGAGAGAGATAGATAGAGGGGCCCCCCTTCTCTATAGAGGGGAACTCTAGG
GTGCCCCGGCCGCTGGCCGGGGCAGATCTATATAGGGGCGTCAGTCGAGTGCCTCTCCCCTCTAT
ATATAGATGGCGGCCCCCCCATAGATAGAGAGATAGGCATATAGATAAGATAGTTCAGGGAGGGG
GGGGGCCCTCTATATCTTATCTATATGGCGGTCGAGCCGTCCATCCTCCATCCATTCTATCCAAA
GGAGTGATACCAGTCATATAGACTATATACTCTATACGTGATACAACGTGATATGAGTCATTCGT
ATCACGTATATAATAGAGGATAGGATATAGAATAATAGAAGGATGATGTGGTGATGAATGAGACC
AGTCGGATGAGTGAGACCAGTCATCAGTCGTATCATCTCATCCATTATTCTATTCTCTATAGACA
TGAGTGATGACTGATATCAGTCGTATCACGTCTATAATGGATGAC
Right flanking sequence: Indices 193180 -- 193679
ATCTTGTCCTACTATCCCGCTCGTTTTCTGCTTAACCCAACCCAATCACAGGCCGCTCCACCCCA
TACATAGATATGGCGCCCCCCCCCCTGATTCCTGGTCGCCCCCATATTCGATTTCATGTATTCAC
TCATAGCATCGTCGCCCTTGCCCGGTAGTCCCGTAGCGGGTGCTTTCGGACGTTTTCCAGGTTCG
GAAGGAACCGCCATAGTAACCACCACGTGCGTTTCATTATCTCCTATCTCATCCTTGACTGCTTC
TCATGAGGTCGCACCGGGAGCTAGTGCTTGCTATCCAAAAATTGCTCCATGGATCTCATCCGAAA
TGTTTGATGCCTCTCGGGGCTTCTTTGGCGACCGTGAAGTCACCGGAACGAGTAGATAGTAGATG
GATGGATGTGCACCGCTGCAGTTGCTCCGCGGCGATATCTATACGTAAGCCCGACTCGCTCTATG
GAACTGGGGCACCATAGCATGTCGGGAAGAAGGGGGGGGGACATA
Found at i:193887 original size:45 final size:44
Alignment explanation
Indices: 193824--193912 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 44
193814 CGTCCCCCCC
193824 CCCTCCCCCCTCCATATAGATAGAGTTGAGAATTCTAGATAGGG
1 CCCTCCCCCCTCCATATAGATAGAGTTGAGAATTCTAGATAGGG
193868 CCCTCCCCCCCTCCATATAGATAGAGTTGAGAATTCTAGATAGGG
1 CCCT-CCCCCCTCCATATAGATAGAGTTGAGAATTCTAGATAGGG
193913 GGGTGCCCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 4 0.09
45 40 0.91
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (44 bp):
CCCTCCCCCCTCCATATAGATAGAGTTGAGAATTCTAGATAGGG
Left flanking sequence: Indices 193324 -- 193823
CCCTTGCCCGGTAGTCCCGTAGCGGGTGCTTTCGGACGTTTTCCAGGTTCGGAAGGAACCGCCAT
AGTAACCACCACGTGCGTTTCATTATCTCCTATCTCATCCTTGACTGCTTCTCATGAGGTCGCAC
CGGGAGCTAGTGCTTGCTATCCAAAAATTGCTCCATGGATCTCATCCGAAATGTTTGATGCCTCT
CGGGGCTTCTTTGGCGACCGTGAAGTCACCGGAACGAGTAGATAGTAGATGGATGGATGTGCACC
GCTGCAGTTGCTCCGCGGCGATATCTATACGTAAGCCCGACTCGCTCTATGGAACTGGGGCACCA
TAGCATGTCGGGAAGAAGGGGGGGGGACATACGGGACAACCCCTCTGTTTCTTGCCCCTTTCGAT
ACACAGTTGAGGGGATCACGAACGCTACAGGTGTGGGAGCCCATCGGTCCGAAGGTCATTTATGC
TATGCGCTCTACTGATTGACACGTGCCCTCTCCCTCGTCCCCCCC
Right flanking sequence: Indices 193913 -- 194412
GGGTGCCCTATCTATGGCCCCCCCTCCCCCCTCCATATATGTATCTATATATAGATAGAGTTGAG
AATTCTAGATAGGGCGACCAACGGGAGAGGTATGGCCGGCCATATATTAGATAGATAGGGGGTCC
CCAACTCTATATAGTTGGCAGTCGGCCGAGCGCCCCATATAGATAGGGGGCCCTGGCGGCGGGGC
CCATGGAATCTATATCTCGCCTCGCATATGGGTAGCAAGGGGGCTCTTATGCCGCCCTGCAATGA
GGCCAAGAGTAGCACACCACTTCGCACCTCTGTATCGGCGAATAACTGGAAGAGTCGGTGGAACC
GGTGAACCACGCATGAGTCGCTGGTTGCGTGGGGCAGAGGGCTCGTAGTACCCCAACTATTGATC
GCCTTTTCCGAATAGCGCTCTATTGATTGGGAGAGGGGCCTATCCCAGATCTAGTCTAGATAGGG
GCCCCCCCCCTCCCCCTCCATATAGAGAATGAGAATTCTGGATAG
Found at i:194666 original size:22 final size:22
Alignment explanation
Indices: 194641--194684 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
194631 TACACTTGAT
194641 TGGCCCGCCGCCATAATATCAA
1 TGGCCCGCCGCCATAATATCAA
*
194663 TGGCCCGCCGCCGTAATATCAA
1 TGGCCCGCCGCCATAATATCAA
194685 GTTGGTGAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.18
Consensus pattern (22 bp):
TGGCCCGCCGCCATAATATCAA
Left flanking sequence: Indices 194141 -- 194640
AGCAAGGGGGCTCTTATGCCGCCCTGCAATGAGGCCAAGAGTAGCACACCACTTCGCACCTCTGT
ATCGGCGAATAACTGGAAGAGTCGGTGGAACCGGTGAACCACGCATGAGTCGCTGGTTGCGTGGG
GCAGAGGGCTCGTAGTACCCCAACTATTGATCGCCTTTTCCGAATAGCGCTCTATTGATTGGGAG
AGGGGCCTATCCCAGATCTAGTCTAGATAGGGGCCCCCCCCCTCCCCCTCCATATAGAGAATGAG
AATTCTGGATAGACTCGAGAGCCATATATAGATAGGGGGCCCCTCTCTATTCTATATACGGCCCC
CCTATATCTCTTCATCTATTCTCTAGAGGCGGGCGCCTATATATAGATCTAGGGGGGCCCCCCCC
TCTCTATCTATATATGGCCCAGATATGATATAGATAGGGGGGGGGCCGTAGCGAAGATCAGCGGC
CCGATGGGAGAAGGGGCCCGAGTCGGCAGATGCCGTACACTTGAT
Right flanking sequence: Indices 194685 -- 195184
GTTGGTGAGCCGTGTGATGGGAGACCTCCCCGCACGGTTCGGAGAGCACTTACTTCAATTCGAGT
GGGGTGCACCACCGCATCGACCATGGGTAACAGAGCTCGCTCGATTCGGTTCGACCCGGAATTCA
CTTCCGACCCTGTGTTTGATAGCCTGACCGTAGTGATGTTAATCGTGGTTACATTCGCAAGTAGC
TTGGTCCATCTCTATTCTATTTCCTATATGTCCGAGGATCCACATAGCCCTCGATTTATGTGCTA
TTCATCCATTTCCACTTTCTTCATGCTCATGTTGGTTACCGGGGATAACCCGATTCAATTATTCC
TGGGATGGGAGGGAGTAGGTCTCGCTTCCCATTTGCTAATCAATTTTTGGTTCACACGACTTCAG
GCGGATAAAGCAGCTATCAAAGCTATGCTTGTCAATCGAGTAGGTGATTTCGGATTAGCTCTCGG
GATTTTGGGTCGTTTCACTCCCTTTCAAACAGTAGACTCCTCGAC
Found at i:197124 original size:12 final size:12
Alignment explanation
Indices: 197091--197142 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
197081 ACTGCCCTCT
197091 ATCTATATATAG
1 ATCTATATATAG
* *
197103 ATATAGATATATGG
1 ATCT--ATATATAG
* *
197117 ATCTATATCTAT
1 ATCTATATATAG
197129 ATCTATATATAG
1 ATCTATATATAG
197141 AT
1 AT
197143 ATGGGGTCGA
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
12 20 0.67
14 10 0.33
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (12 bp):
ATCTATATATAG
Left flanking sequence: Indices 196591 -- 197090
CGACACGCATGCACGGGAGCAGGATTCCCCAAAAAGCCAGGGTCGCGGGTGGCCAAGAGGGCCCA
CTTGGAGACTCGGGATCTCAGCAGATATAGATCTATATCTGCCGGAAGAGAAGAGAGAAGAAATA
GATCTTATCTATCAATCAATCTATATTAAGCTCGTGATAGATAATACCCCCAGTGTCCATTCGTT
CCTGCATAACAACTATCAACTCTCCGCCCCCACCCCCCTCCCCCTCCCTGAACTATCTTATCTAT
ATGGCGCTCCGCTCCCTCCCCCTCTAGATCTATGGCCTAACCCATATAGATAGAGGGCAGGAGCT
ATGGAGAGTCGGCCCCCCCATCATATATCATAGAGAGGAAGCCCATATCTCCAGGGGGGTCCCGG
ATGCCTATATATCCATATGGCTGAAGTCTGTAGTCGCCCCATATAGATCTCTATATAGATAGGAT
AGGGGTCTAGTCGGTCGATCAGATAGATATCAATCACTGCCCTCT
Right flanking sequence: Indices 197143 -- 197642
ATGGGGTCGATCGGATAGATAGTATCAGTATCCATCACTCCCCCCCACCCCTTCCTATCTTATAG
TTCTAGATAGGGCCCTATATCTCTATTCGTGCCATATAGATATATCTCTAGGGCCCTCCGGGAAT
ATAGATTAGATATCCCCCCCGATGGGCGAGAGAGGGGGGGGGGTTGGGCGGGCATTCATTACCAC
ATCACAGATCTGTATCACATCACTGAGATGGAGATGGAGACTAAGATGGATCTCATTACCGGATA
GAGGGGGCCACATAAGATCTTCGTATCACATCACATCACTAATATGGATTGGATTGGATTGGATT
GGATTGGATTGGATTGGATTGGATTGGATCGGATGGATCATATAGATTAGATCTGATAGTCGATC
CATAGATTAGATGTCGGGCATCCTATCCGCCCCTATCTGAACGGGGCCCCCAGTTCTGAACTAGA
TCCTACCCGGATGTCGGGCATCCGAGAAACTATAGATGTAGATCT
Found at i:197455 original size:5 final size:5
Alignment explanation
Indices: 197447--197505 Score: 102
Period size: 5 Copynumber: 12.0 Consensus size: 5
197437 ATCACTAATA
197447 TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT
1 TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT TGGAT
*
197497 CGGA- TGGAT
1 TGGAT TGGAT
197506 CATATAGATT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
4 3 0.06
5 48 0.94
ACGTcount: A:0.20, C:0.02, G:0.41, T:0.37
Consensus pattern (5 bp):
TGGAT
Left flanking sequence: Indices 196947 -- 197446
AGAGAGGAAGCCCATATCTCCAGGGGGGTCCCGGATGCCTATATATCCATATGGCTGAAGTCTGT
AGTCGCCCCATATAGATCTCTATATAGATAGGATAGGGGTCTAGTCGGTCGATCAGATAGATATC
AATCACTGCCCTCTATCTATATATAGATATAGATATATGGATCTATATCTATATCTATATATAGA
TATGGGGTCGATCGGATAGATAGTATCAGTATCCATCACTCCCCCCCACCCCTTCCTATCTTATA
GTTCTAGATAGGGCCCTATATCTCTATTCGTGCCATATAGATATATCTCTAGGGCCCTCCGGGAA
TATAGATTAGATATCCCCCCCGATGGGCGAGAGAGGGGGGGGGGTTGGGCGGGCATTCATTACCA
CATCACAGATCTGTATCACATCACTGAGATGGAGATGGAGACTAAGATGGATCTCATTACCGGAT
AGAGGGGGCCACATAAGATCTTCGTATCACATCACATCACTAATA
Right flanking sequence: Indices 197506 -- 198005
CATATAGATTAGATCTGATAGTCGATCCATAGATTAGATGTCGGGCATCCTATCCGCCCCTATCT
GAACGGGGCCCCCAGTTCTGAACTAGATCCTACCCGGATGTCGGGCATCCGAGAAACTATAGATG
TAGATCTAGGCTCTCCCCCGCGCCATATGGAATAGATATCGCCATATAGATATAAGGGCCAAGCA
TCCGGCTTGGAAAGTATAGTGTATATGGCAAGTATAGTGTATATGGCAAGTATAGTGTATATGGC
AAGTATAGTGTATATGGCAACTTCAAGCTCTTGGCTCAATCTCTGGCCTGGCCTGGCTAATTGAT
CGCTCGTGGCGTGGCTCGCCGGCATAAAGTTTTTTCAGCCCCCGAGTGTTTATGCGCGCCTCCAT
GTCTATGCGCTCTTTCCCTCAATCGACCAGGTGCGCCCCTATATCTCTCTCTATAGGCGCCCGCC
CCGCCTCCCGCCTTATTTAGAAGTAACTGGTAACTGGCCCTGCCC
Found at i:197735 original size:18 final size:18
Alignment explanation
Indices: 197712--197785 Score: 148
Period size: 18 Copynumber: 4.1 Consensus size: 18
197702 CCGGCTTGGA
197712 AAGTATAGTGTATATGGC
1 AAGTATAGTGTATATGGC
197730 AAGTATAGTGTATATGGC
1 AAGTATAGTGTATATGGC
197748 AAGTATAGTGTATATGGC
1 AAGTATAGTGTATATGGC
197766 AAGTATAGTGTATATGGC
1 AAGTATAGTGTATATGGC
197784 AA
1 AA
197786 CTTCAAGCTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 56 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (18 bp):
AAGTATAGTGTATATGGC
Left flanking sequence: Indices 197212 -- 197711
AGATAGGGCCCTATATCTCTATTCGTGCCATATAGATATATCTCTAGGGCCCTCCGGGAATATAG
ATTAGATATCCCCCCCGATGGGCGAGAGAGGGGGGGGGGTTGGGCGGGCATTCATTACCACATCA
CAGATCTGTATCACATCACTGAGATGGAGATGGAGACTAAGATGGATCTCATTACCGGATAGAGG
GGGCCACATAAGATCTTCGTATCACATCACATCACTAATATGGATTGGATTGGATTGGATTGGAT
TGGATTGGATTGGATTGGATTGGATCGGATGGATCATATAGATTAGATCTGATAGTCGATCCATA
GATTAGATGTCGGGCATCCTATCCGCCCCTATCTGAACGGGGCCCCCAGTTCTGAACTAGATCCT
ACCCGGATGTCGGGCATCCGAGAAACTATAGATGTAGATCTAGGCTCTCCCCCGCGCCATATGGA
ATAGATATCGCCATATAGATATAAGGGCCAAGCATCCGGCTTGGA
Right flanking sequence: Indices 197786 -- 198285
CTTCAAGCTCTTGGCTCAATCTCTGGCCTGGCCTGGCTAATTGATCGCTCGTGGCGTGGCTCGCC
GGCATAAAGTTTTTTCAGCCCCCGAGTGTTTATGCGCGCCTCCATGTCTATGCGCTCTTTCCCTC
AATCGACCAGGTGCGCCCCTATATCTCTCTCTATAGGCGCCCGCCCCGCCTCCCGCCTTATTTAG
AAGTAACTGGTAACTGGCCCTGCCCTTACGTCTACGCGTCTCGAAGTAGTCTCCTTCCAATCGAT
GAAGCATGGACCAACTTGAACTTGGATTCTTTATGCGCTCTTACTCCCTTTTCGCCGCGTGCACT
TTCAGATTGAGTCAGATTGAGATAGAGTAGGTCGAGTGCCCCCTATATCTATATATCTGGATATG
GGCCCATATACTTTCTATAGAGAGGGGGAGGGGCGAGAATGAGAATGTATTTTATTCGCCCTCCT
CCCTCCCATGCTTTTTTTCCTGGTCCTTCGATTGAGAATAGATAT
Found at i:199331 original size:6 final size:6
Alignment explanation
Indices: 199315--199356 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
199305 TATATAGAGA
* *
199315 ATAGAAT ATAGAT ATAGAT ATAGAG AGAGAT ATAGAT ATAGA
1 ATAG-AT ATAGAT ATAGAT ATAGAT ATAGAT ATAGAT ATAGA
199357 GAGAGATCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 27 0.87
7 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.26
Consensus pattern (6 bp):
ATAGAT
Left flanking sequence: Indices 198815 -- 199314
ATTGGACTGATCAATACACCAATCATTAAGTCCCCTGTCAACTGGTGGAATACACCGCATCAACC
TGGGAGCATTAGCCAATTTGGTACATCGACACATGTTTCCATGCCCATTCCAATCTTGTTCAACT
CTGCTAACTCCCCCTTTTCAACCTGTATCTCGCTTGTTTTGGAAACACGTCTTCTCATTCCATCC
CTTCTCGAATCTTCATTCATTACGGAAGCTCGTTCTTCTCCGAATGAGGGCATTTCTGCTAGCTC
CATGATGCCCCCAGATAATCTATAGGGGCCCAAACCCGATCATACTGTTCCGGCAAGATTCCGCG
CGATCGAATACTCAGTGAGCTGAAAATCGAGAAGCTCTTTGATTAGCGGAGAGAGAATTTTCTGT
TTCGAATCCGGACTCAATGGTCGGTTTTCTGGTATACGTTTACCGTGGCGTGGTCCGCTATTTCA
TTCCCTCCCCCCCCCTCCAGAGAATCTAGGGGCCCTATATAGAGA
Right flanking sequence: Indices 199357 -- 199856
GAGAGATCTATTCTCTATATCTATATTCTATTCTATGGGGGTTGGTCGGTTGTTCTCTGTAGTGT
AGTCGGGGCGGCCCCTATCTAAATTAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGAGACGGGTGCAGGATCACACCAGATCGATCCGCT
GAGTTCGGGCAAACTCTTATTGGAATTCCGGGGACCCCATGGTAGAGCTGTTCTCTCGGGAGGAT
CTATATAGAACTGGCCGAGCCAGATATATAGATAGGGGCGGGCCCCCATCCCATATAGATATAGC
TGACATCCCGGATCGGCTCCCCCCCTACCCCAACTGAAACGGACCTATATATCCATATGGCCGAT
CTGTACTATATACTGAGATAGATATCTAGATAGGGGCCTTGGAGATCGGGGCAAGCCGATCTGTG
ATTTGAGAAATTTCTAAATGCTTGACCGGCCCATATATAGATAGG
Found at i:199347 original size:18 final size:18
Alignment explanation
Indices: 199324--199363 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
199314 AATAGAATAT
199324 AGATATAGATATAGAGAG
1 AGATATAGATATAGAGAG
199342 AGATATAGATATAGAGAG
1 AGATATAGATATAGAGAG
199360 AGAT
1 AGAT
199364 CTATTCTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.23
Consensus pattern (18 bp):
AGATATAGATATAGAGAG
Left flanking sequence: Indices 198824 -- 199323
ATCAATACACCAATCATTAAGTCCCCTGTCAACTGGTGGAATACACCGCATCAACCTGGGAGCAT
TAGCCAATTTGGTACATCGACACATGTTTCCATGCCCATTCCAATCTTGTTCAACTCTGCTAACT
CCCCCTTTTCAACCTGTATCTCGCTTGTTTTGGAAACACGTCTTCTCATTCCATCCCTTCTCGAA
TCTTCATTCATTACGGAAGCTCGTTCTTCTCCGAATGAGGGCATTTCTGCTAGCTCCATGATGCC
CCCAGATAATCTATAGGGGCCCAAACCCGATCATACTGTTCCGGCAAGATTCCGCGCGATCGAAT
ACTCAGTGAGCTGAAAATCGAGAAGCTCTTTGATTAGCGGAGAGAGAATTTTCTGTTTCGAATCC
GGACTCAATGGTCGGTTTTCTGGTATACGTTTACCGTGGCGTGGTCCGCTATTTCATTCCCTCCC
CCCCCCTCCAGAGAATCTAGGGGCCCTATATAGAGAATAGAATAT
Right flanking sequence: Indices 199364 -- 199863
CTATTCTCTATATCTATATTCTATTCTATGGGGGTTGGTCGGTTGTTCTCTGTAGTGTAGTCGGG
GCGGCCCCTATCTAAATTAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTGGAGACGGGTGCAGGATCACACCAGATCGATCCGCTGAGTTCG
GGCAAACTCTTATTGGAATTCCGGGGACCCCATGGTAGAGCTGTTCTCTCGGGAGGATCTATATA
GAACTGGCCGAGCCAGATATATAGATAGGGGCGGGCCCCCATCCCATATAGATATAGCTGACATC
CCGGATCGGCTCCCCCCCTACCCCAACTGAAACGGACCTATATATCCATATGGCCGATCTGTACT
ATATACTGAGATAGATATCTAGATAGGGGCCTTGGAGATCGGGGCAAGCCGATCTGTGATTTGAG
AAATTTCTAAATGCTTGACCGGCCCATATATAGATAGGGGACTAG
Found at i:199363 original size:12 final size:12
Alignment explanation
Indices: 199306--199356 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
199296 TAGGGGCCCT
199306 ATATAGAGAATAG
1 ATATAGAG-ATAG
*
199319 AATATAGATATAG
1 -ATATAGAGATAG
*
199332 ATATAGAGAGAG
1 ATATAGAGATAG
*
199344 ATATAGATATAG
1 ATATAGAGATAG
199356 A
1 A
199357 GAGAGATCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
12 21 0.66
13 4 0.12
14 7 0.22
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (12 bp):
ATATAGAGATAG
Left flanking sequence: Indices 198806 -- 199305
TCCATCTGTATTGGACTGATCAATACACCAATCATTAAGTCCCCTGTCAACTGGTGGAATACACC
GCATCAACCTGGGAGCATTAGCCAATTTGGTACATCGACACATGTTTCCATGCCCATTCCAATCT
TGTTCAACTCTGCTAACTCCCCCTTTTCAACCTGTATCTCGCTTGTTTTGGAAACACGTCTTCTC
ATTCCATCCCTTCTCGAATCTTCATTCATTACGGAAGCTCGTTCTTCTCCGAATGAGGGCATTTC
TGCTAGCTCCATGATGCCCCCAGATAATCTATAGGGGCCCAAACCCGATCATACTGTTCCGGCAA
GATTCCGCGCGATCGAATACTCAGTGAGCTGAAAATCGAGAAGCTCTTTGATTAGCGGAGAGAGA
ATTTTCTGTTTCGAATCCGGACTCAATGGTCGGTTTTCTGGTATACGTTTACCGTGGCGTGGTCC
GCTATTTCATTCCCTCCCCCCCCCTCCAGAGAATCTAGGGGCCCT
Right flanking sequence: Indices 199357 -- 199856
GAGAGATCTATTCTCTATATCTATATTCTATTCTATGGGGGTTGGTCGGTTGTTCTCTGTAGTGT
AGTCGGGGCGGCCCCTATCTAAATTAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGAGACGGGTGCAGGATCACACCAGATCGATCCGCT
GAGTTCGGGCAAACTCTTATTGGAATTCCGGGGACCCCATGGTAGAGCTGTTCTCTCGGGAGGAT
CTATATAGAACTGGCCGAGCCAGATATATAGATAGGGGCGGGCCCCCATCCCATATAGATATAGC
TGACATCCCGGATCGGCTCCCCCCCTACCCCAACTGAAACGGACCTATATATCCATATGGCCGAT
CTGTACTATATACTGAGATAGATATCTAGATAGGGGCCTTGGAGATCGGGGCAAGCCGATCTGTG
ATTTGAGAAATTTCTAAATGCTTGACCGGCCCATATATAGATAGG
Found at i:199459 original size:3 final size:3
Alignment explanation
Indices: 199446--199515 Score: 131
Period size: 3 Copynumber: 23.3 Consensus size: 3
199436 CTATCTAAAT
*
199446 TAG TGG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
199494 TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG T
199516 GGAGACGGGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TAG
Left flanking sequence: Indices 198946 -- 199445
TGCTAACTCCCCCTTTTCAACCTGTATCTCGCTTGTTTTGGAAACACGTCTTCTCATTCCATCCC
TTCTCGAATCTTCATTCATTACGGAAGCTCGTTCTTCTCCGAATGAGGGCATTTCTGCTAGCTCC
ATGATGCCCCCAGATAATCTATAGGGGCCCAAACCCGATCATACTGTTCCGGCAAGATTCCGCGC
GATCGAATACTCAGTGAGCTGAAAATCGAGAAGCTCTTTGATTAGCGGAGAGAGAATTTTCTGTT
TCGAATCCGGACTCAATGGTCGGTTTTCTGGTATACGTTTACCGTGGCGTGGTCCGCTATTTCAT
TCCCTCCCCCCCCCTCCAGAGAATCTAGGGGCCCTATATAGAGAATAGAATATAGATATAGATAT
AGAGAGAGATATAGATATAGAGAGAGATCTATTCTCTATATCTATATTCTATTCTATGGGGGTTG
GTCGGTTGTTCTCTGTAGTGTAGTCGGGGCGGCCCCTATCTAAAT
Right flanking sequence: Indices 199516 -- 200015
GGAGACGGGTGCAGGATCACACCAGATCGATCCGCTGAGTTCGGGCAAACTCTTATTGGAATTCC
GGGGACCCCATGGTAGAGCTGTTCTCTCGGGAGGATCTATATAGAACTGGCCGAGCCAGATATAT
AGATAGGGGCGGGCCCCCATCCCATATAGATATAGCTGACATCCCGGATCGGCTCCCCCCCTACC
CCAACTGAAACGGACCTATATATCCATATGGCCGATCTGTACTATATACTGAGATAGATATCTAG
ATAGGGGCCTTGGAGATCGGGGCAAGCCGATCTGTGATTTGAGAAATTTCTAAATGCTTGACCGG
CCCATATATAGATAGGGGACTAGACCCCATGGTAGCAAATAGAGCCGAGCCTACCCTACCATGAA
GTACTACAACTAGACTCTATACTAGATATGGCCCCAACCCCATCCCTTGCCCAAGATAGGGCAGA
TATCTAGATAGGGCCCTGCTTCCCCCGTATTCACCCATCTATATA
Found at i:201681 original size:8 final size:8
Alignment explanation
Indices: 201670--201728 Score: 91
Period size: 8 Copynumber: 7.4 Consensus size: 8
201660 CCCTCATTTA
201670 CATAACTG
1 CATAACTG
201678 CATAACTG
1 CATAACTG
201686 CATAACTG
1 CATAACTG
*
201694 CATAATTG
1 CATAACTG
*
201702 CATGACTG
1 CATAACTG
*
201710 CATGACTG
1 CATAACTG
201718 CATAACTG
1 CATAACTG
201726 CAT
1 CAT
201729 CACGGCGGAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 47 1.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (8 bp):
CATAACTG
Left flanking sequence: Indices 201170 -- 201669
CCAATCCAATATACATAGACATGGACATGGGCATGGACAGGGGTGGTACCGTTCCGACATGGACA
AGGGTGGTTGCACCGTATAGTTATGGGTCTAGGTATAGGGTGGCTGCATCCATTCCTTGCGAGTT
TCTATCTCCCCCATATCATCTAGACGGGGGATGGGGGGGGTTTCGGTGGGGTAGGGAGCTGACCA
GAGGTGTCTGCTTCCCTGGCTAGGGATGGAGAGGGTGAGGCTTCCTATCTCGACTCTAGTATATA
TAGCTTATGGCTCTGGAGAGAGGGACCGTCGGCGAGGAATATCTCTATATCTAGAAAGATCTCTC
TATATAGATATAGAGATATATGTAATACCGGCCTGGCCCGGGGGTCCGTCAATAGAAAGAGATAG
GGGAGGTGCCCCTCTGCTAGTGCCAGTGCTGGTGCTAGTGTTAGTATATAGGGTTGGTGGGAGGA
CATTCCTCTGCTCTCTCCAGCTCCAACCCCTCCCTCCCTCATTTA
Right flanking sequence: Indices 201729 -- 202228
CACGGCGGAGCGACTGGACTGCCGCCTATATAGCCTATACAGTGAATGCTGTGCTGTACCCCCCC
GCCCTCGACTCAGCATCTGGATTTCTAGTTCCGCCTAGAATAGAATCTATATAGATATATAGGGG
CGGAGCAAAGCAAAGCTACAAAGCGATGGATGAGACCTGTGAACGAAGAAGATCATGCTTTCATT
CTCTCGATTAGGGCTTCGATCGCCCGAGCCGGATCGGAGTCACAGTCACTGAGATAGATTTCTAT
GCAGCGGCGGCGGGGCAGCGGCAGCGGGCTCTTGAAGCTGCCATCCAGGGCCGGCGGTTGTGAGG
ACGGCGCCGGACTGAGGCATGAGAATAGCTCTTGCGACTCCTCCCGTGAATGCCCCCGCGGAGAA
ATGGGAAATCAATTCCAATTCACAATTCACATTCACCAGATGAATCGGGAATCGGAATCGAGCTG
CGGGAATAGGAAAGATTCTACACCCCTCCCCTAACTACTAACTAA
Found at i:202237 original size:8 final size:8
Alignment explanation
Indices: 202232--202266 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
202222 TAACTAACTG
202232 ACTAACCA
1 ACTAACCA
202240 ACTAACCA
1 ACTAACCA
*
202248 ACTAACCG
1 ACTAACCA
202256 ACTAACCA
1 ACTAACCA
202264 ACT
1 ACT
202267 CCAGGACTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.46, C:0.37, G:0.03, T:0.14
Consensus pattern (8 bp):
ACTAACCA
Left flanking sequence: Indices 201732 -- 202231
GGCGGAGCGACTGGACTGCCGCCTATATAGCCTATACAGTGAATGCTGTGCTGTACCCCCCCGCC
CTCGACTCAGCATCTGGATTTCTAGTTCCGCCTAGAATAGAATCTATATAGATATATAGGGGCGG
AGCAAAGCAAAGCTACAAAGCGATGGATGAGACCTGTGAACGAAGAAGATCATGCTTTCATTCTC
TCGATTAGGGCTTCGATCGCCCGAGCCGGATCGGAGTCACAGTCACTGAGATAGATTTCTATGCA
GCGGCGGCGGGGCAGCGGCAGCGGGCTCTTGAAGCTGCCATCCAGGGCCGGCGGTTGTGAGGACG
GCGCCGGACTGAGGCATGAGAATAGCTCTTGCGACTCCTCCCGTGAATGCCCCCGCGGAGAAATG
GGAAATCAATTCCAATTCACAATTCACATTCACCAGATGAATCGGGAATCGGAATCGAGCTGCGG
GAATAGGAAAGATTCTACACCCCTCCCCTAACTACTAACTAACTG
Right flanking sequence: Indices 202267 -- 202766
CCAGGACTGCAACTCTAACTGACTAACTGGACAATGGCCCCCGCCTTCCAATGTTTCGATTCCTT
CCCATCCCCATCAGGTTGTGGTTGTGAAGGATGTGATCGATTCGGCCGAATCAATCCCAGCAATC
GGATCACCCCCTCAATCTGGCGAGGGAGGCGGGCCGGTTCCCTTCTCCGGCCATCTATCTATCTC
TCTCTCTATATCTCTATCTATCTATATCTCTATCTATCTATCTATCTCTCTCTCTATATCTCTCT
CTATCTATATAAGGGGTAGCATTTCCCATCTATTCGCTCGCCCGACCCGACAACTAGAGATATGG
GAGATCTAGGGCTATTCTTCGAAGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCGAAATCGGA
ATAGCGGGATTCTTGGGTCATCTCAATTGGTTCGGAAACCACACGTTTCTCCGGATCATCGTAGC
GTACTTCCACATATCCACTCAGGGGGGAGTCTTTTCGTAATGGAT
Found at i:202458 original size:4 final size:4
Alignment explanation
Indices: 202449--202534 Score: 73
Period size: 4 Copynumber: 21.5 Consensus size: 4
202439 TTCTCCGGCC
* * * * * *
202449 ATCT ATCT ATCT CTCT CTCT ATAT CTCT ATCT ATCT ATAT CTCT ATCT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT
* * * * *
202497 ATCT ATCT ATCT CTCT CTCT ATAT CTCT CTCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT AT
202535 ATAAGGGGTA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 66 1.00
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (4 bp):
ATCT
Left flanking sequence: Indices 201949 -- 202448
GAGCCGGATCGGAGTCACAGTCACTGAGATAGATTTCTATGCAGCGGCGGCGGGGCAGCGGCAGC
GGGCTCTTGAAGCTGCCATCCAGGGCCGGCGGTTGTGAGGACGGCGCCGGACTGAGGCATGAGAA
TAGCTCTTGCGACTCCTCCCGTGAATGCCCCCGCGGAGAAATGGGAAATCAATTCCAATTCACAA
TTCACATTCACCAGATGAATCGGGAATCGGAATCGAGCTGCGGGAATAGGAAAGATTCTACACCC
CTCCCCTAACTACTAACTAACTGACTAACCAACTAACCAACTAACCGACTAACCAACTCCAGGAC
TGCAACTCTAACTGACTAACTGGACAATGGCCCCCGCCTTCCAATGTTTCGATTCCTTCCCATCC
CCATCAGGTTGTGGTTGTGAAGGATGTGATCGATTCGGCCGAATCAATCCCAGCAATCGGATCAC
CCCCTCAATCTGGCGAGGGAGGCGGGCCGGTTCCCTTCTCCGGCC
Right flanking sequence: Indices 202535 -- 203034
ATAAGGGGTAGCATTTCCCATCTATTCGCTCGCCCGACCCGACAACTAGAGATATGGGAGATCTA
GGGCTATTCTTCGAAGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCGAAATCGGAATAGCGGG
ATTCTTGGGTCATCTCAATTGGTTCGGAAACCACACGTTTCTCCGGATCATCGTAGCGTACTTCC
ACATATCCACTCAGGGGGGAGTCTTTTCGTAATGGATGACCCTCGGAACCGTGATCTGTTGATAT
ACGGCGTAGATCCGGATGATTGATGGAATAAACACCGGACATATCCCATACTTCTCGCTCCCACC
GGCCGGCTGATGGAAATGGACTGACTACCGGGGATATTCGTGTTATTTCGTCTACACTGGTTTGT
ACACGAATGCGTGGGTTATACCGAGTACTTGGTGAATTATGAACCGCTTCAAATCTTCGTCTCCG
GGAGGGATAATCAACTCCGCGGATATCGATCAGAACTTGGGAACG
Found at i:202475 original size:12 final size:12
Alignment explanation
Indices: 202454--202532 Score: 95
Period size: 12 Copynumber: 6.6 Consensus size: 12
202444 CGGCCATCTA
202454 TCTATCTCTCTC
1 TCTATCTCTCTC
* *
202466 TCTATATCTCTA
1 TCTATCTCTCTC
* *
202478 TCTATCTATATC
1 TCTATCTCTCTC
* *
202490 TCTATCTATCTA
1 TCTATCTCTCTC
202502 TCTATCTCTCTC
1 TCTATCTCTCTC
*
202514 TCTATATCTCTC
1 TCTATCTCTCTC
202526 TCTATCT
1 TCTATCT
202533 ATATAAGGGG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 55 1.00
ACGTcount: A:0.18, C:0.32, G:0.00, T:0.51
Consensus pattern (12 bp):
TCTATCTCTCTC
Left flanking sequence: Indices 201954 -- 202453
GGATCGGAGTCACAGTCACTGAGATAGATTTCTATGCAGCGGCGGCGGGGCAGCGGCAGCGGGCT
CTTGAAGCTGCCATCCAGGGCCGGCGGTTGTGAGGACGGCGCCGGACTGAGGCATGAGAATAGCT
CTTGCGACTCCTCCCGTGAATGCCCCCGCGGAGAAATGGGAAATCAATTCCAATTCACAATTCAC
ATTCACCAGATGAATCGGGAATCGGAATCGAGCTGCGGGAATAGGAAAGATTCTACACCCCTCCC
CTAACTACTAACTAACTGACTAACCAACTAACCAACTAACCGACTAACCAACTCCAGGACTGCAA
CTCTAACTGACTAACTGGACAATGGCCCCCGCCTTCCAATGTTTCGATTCCTTCCCATCCCCATC
AGGTTGTGGTTGTGAAGGATGTGATCGATTCGGCCGAATCAATCCCAGCAATCGGATCACCCCCT
CAATCTGGCGAGGGAGGCGGGCCGGTTCCCTTCTCCGGCCATCTA
Right flanking sequence: Indices 202533 -- 203032
ATATAAGGGGTAGCATTTCCCATCTATTCGCTCGCCCGACCCGACAACTAGAGATATGGGAGATC
TAGGGCTATTCTTCGAAGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCGAAATCGGAATAGCG
GGATTCTTGGGTCATCTCAATTGGTTCGGAAACCACACGTTTCTCCGGATCATCGTAGCGTACTT
CCACATATCCACTCAGGGGGGAGTCTTTTCGTAATGGATGACCCTCGGAACCGTGATCTGTTGAT
ATACGGCGTAGATCCGGATGATTGATGGAATAAACACCGGACATATCCCATACTTCTCGCTCCCA
CCGGCCGGCTGATGGAAATGGACTGACTACCGGGGATATTCGTGTTATTTCGTCTACACTGGTTT
GTACACGAATGCGTGGGTTATACCGAGTACTTGGTGAATTATGAACCGCTTCAAATCTTCGTCTC
CGGGAGGGATAATCAACTCCGCGGATATCGATCAGAACTTGGGAA
Found at i:202485 original size:16 final size:16
Alignment explanation
Indices: 202466--202536 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
202456 TATCTCTCTC
202466 TCTATATCTCTATCTA
1 TCTATATCTCTATCTA
202482 TCTATATCTCTATCTA
1 TCTATATCTCTATCTA
* * * *
202498 TCTATCTATCTCTCTC
1 TCTATATCTCTATCTA
*
202514 TCTATATCTCTCTCTA
1 TCTATATCTCTATCTA
202530 TCTATAT
1 TCTATAT
202537 AAGGGGTAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.51
Consensus pattern (16 bp):
TCTATATCTCTATCTA
Left flanking sequence: Indices 201966 -- 202465
CAGTCACTGAGATAGATTTCTATGCAGCGGCGGCGGGGCAGCGGCAGCGGGCTCTTGAAGCTGCC
ATCCAGGGCCGGCGGTTGTGAGGACGGCGCCGGACTGAGGCATGAGAATAGCTCTTGCGACTCCT
CCCGTGAATGCCCCCGCGGAGAAATGGGAAATCAATTCCAATTCACAATTCACATTCACCAGATG
AATCGGGAATCGGAATCGAGCTGCGGGAATAGGAAAGATTCTACACCCCTCCCCTAACTACTAAC
TAACTGACTAACCAACTAACCAACTAACCGACTAACCAACTCCAGGACTGCAACTCTAACTGACT
AACTGGACAATGGCCCCCGCCTTCCAATGTTTCGATTCCTTCCCATCCCCATCAGGTTGTGGTTG
TGAAGGATGTGATCGATTCGGCCGAATCAATCCCAGCAATCGGATCACCCCCTCAATCTGGCGAG
GGAGGCGGGCCGGTTCCCTTCTCCGGCCATCTATCTATCTCTCTC
Right flanking sequence: Indices 202537 -- 203036
AAGGGGTAGCATTTCCCATCTATTCGCTCGCCCGACCCGACAACTAGAGATATGGGAGATCTAGG
GCTATTCTTCGAAGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCGAAATCGGAATAGCGGGAT
TCTTGGGTCATCTCAATTGGTTCGGAAACCACACGTTTCTCCGGATCATCGTAGCGTACTTCCAC
ATATCCACTCAGGGGGGAGTCTTTTCGTAATGGATGACCCTCGGAACCGTGATCTGTTGATATAC
GGCGTAGATCCGGATGATTGATGGAATAAACACCGGACATATCCCATACTTCTCGCTCCCACCGG
CCGGCTGATGGAAATGGACTGACTACCGGGGATATTCGTGTTATTTCGTCTACACTGGTTTGTAC
ACGAATGCGTGGGTTATACCGAGTACTTGGTGAATTATGAACCGCTTCAAATCTTCGTCTCCGGG
AGGGATAATCAACTCCGCGGATATCGATCAGAACTTGGGAACGCG
Found at i:204497 original size:25 final size:22
Alignment explanation
Indices: 204457--204507 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
204447 AGAATAGATA
*
204457 GGGGGCGCCCCTCTATCTATATG
1 GGGGGCGCCCCTCTATCT-GATG
*
204480 GGGGGGGCCCCTACCTATCTGATG
1 GGGGGCGCCCCT--CTATCTGATG
204504 GGGG
1 GGGG
204508 CCCTATCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 11 0.46
24 7 0.29
25 6 0.25
ACGTcount: A:0.12, C:0.27, G:0.39, T:0.22
Consensus pattern (22 bp):
GGGGGCGCCCCTCTATCTGATG
Left flanking sequence: Indices 203957 -- 204456
TCTATATAGATAGGGGCAGCCTGCCTATAGATCTCTTATCTGGGAGGGCCCCTATCTAGGCGTAG
CCCCCCTCTATAGATCCGATCCCCCTACCCGGTGGGAGGTGGGTGAACCACCCCCCCCTAGTTCA
GATTGTAGATATGGCGGATAGGTAAGATAAGATATAGAGAGAGGGGAGAGGGGGGCTTGCACCCC
TCTCTCTCTATATGGCGAGTGCCCCATATAGAGAGAGGGGGCCCTCGCCATATAATATAGAGAGA
GAGGGGCTCGCGTCTTATATTATATACGTGATATGACTGATATCACGTATATAATAGATGGTAGA
TGTGGTGCCCCTATATAGAGTAGGCCATCGGGAGAGGAGCCCTGAACCCATATAGAACAGATAAG
ATCTATAGGGAGGGGGGGGGGGGGGGGAGGGGGCGGCTATAGGCTATATATAGATTAGATAGTCG
GGCATCTAGAGTTGGCCCTCTCCCGCCCCATATAGAGAATAGATA
Right flanking sequence: Indices 204508 -- 205007
CCCTATCTAGAGTCTATAGAGACGGGGGGGGCGATAGATCGAGGAAGAACGCATGGGCCCGATGG
ATCGGGGATGTTACTCGACTGACGAACCAGTGGTACCCTCCATGTTCCCGGGCAGTGGACTGGTC
GAGTCCTCAAAGCTTAACTCGAGGTCCCCCTATCTAATCTAAATCTGAACTCTGGGGGTGGGGTG
CGCTCGACCTCTTCTCTTCGTATATCCCCCCTATCCCTATCTCTATATGGGATGGGGCTGGGGCC
TCGCCATATAGAGAGTTCAGGGCTCCCCCTCCTAACCGGGGCGGGGGAGTGCTAGTTCTCTAGTT
GGCCCAGATGTAGAGGGTAGGGGTATATAGATAGGGCGCCGACCATCCATCTACCCTATTGAGAG
AAATGGCTCTCGGGAGGGCCCTATCTCTATATGGCTGCCCCTATCTCTTCTCTATGCCCGGCCCG
GGGTGATCTTTCTTGAACCGGATGATCGGAGCGCAGTCCCATATG
Found at i:206002 original size:5 final size:5
Alignment explanation
Indices: 205992--206031 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
205982 GATGATATTA
205992 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CAACC
1 CAACC CAACC CAACC CAACC CAACC CAACC CAACC CAACC
206032 GTGTCACCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (5 bp):
CAACC
Left flanking sequence: Indices 205492 -- 205991
ATCTAGGTGGGGGGTGGGGCCCCTATCTATTCTCTATATGGGATTCTTAGCATCCATCCAGTTAT
GACAGACACACGCCCTATCTCTACTCTATATGGCGGTTGTTAGTTCGCTGCCGCTCACTGCACTC
CGGTAGGGCTCCCTACTGATAGTAATAGTAAGAGCGCTCCCTCCCTAGTTAGATCAGGATGAGTT
GGTGTGACCGTTGTACAGTCGAGATGGACGTGTACTCCATTCGATCCTATTGTTCGTGGCACATC
GGCCGGCAATAAGAGATGGACGGTCCACCATGTCAGATCACATGCCAGCCGCCCCGCCACCCGCC
ACATCAGAGTAGTGGAGTGGTGGAGTAGTGTTCTTCGATGGTGTCATCGTGGATATATTACAGCA
CACCACAGCAGGGGCAGCATAGCGAAACAGATATATAGACTATTACTCCGATTAGCGCTCTCGTT
CTCGGTGTCGTCCTCCTCACCATCCAATGAATGATGATGATATTA
Right flanking sequence: Indices 206032 -- 206531
GTGTCACCTCATCTTCTTTATCATTATCACGTTACAGCTGCCGCTCACTGCACGCTGTTCCCATT
CACTCACTGATGCAGAACGACTCAGTCCGAGTCCGCTGTCGCTCACCGCACCCTCCACCTCTGTT
ATTCTAAACACAATGCGATTCACAGAACGTCCCGCTACGGACCCGCATGAACACACGGAGAGCCC
TATCTGAAATAAAATAATGGTTCGGAAAGATTACTGGCCGGTCTCGAGTTGCTCTCCTCTTCGAC
AATCAATCGACAATCAATTCATGCAATGGATTATGCGGAAGCCCATCGTCAGCCATACATAGATA
GGGGGCCTCGGCCTCCATAGAGATCTATATAGGGGGAGGGGGCCGCCATATAGAGAGAGGGGCGG
GCCCCTCCCCTCCCCTCTCTATAGATCTCGATCGAGATCGATCAGATCTGGCAGATCTAGTTGAT
CGGGGCCCTCTCTCTATATGGATATGGGCCCAGATCTCTAGGGGG
Found at i:206918 original size:5 final size:5
Alignment explanation
Indices: 206910--206959 Score: 100
Period size: 5 Copynumber: 10.0 Consensus size: 5
206900 CCTCTATATA
206910 GATCT GATCT GATCT GATCT GATCT GATCT GATCT GATCT GATCT GATCT
1 GATCT GATCT GATCT GATCT GATCT GATCT GATCT GATCT GATCT GATCT
206960 ATATGGCGCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (5 bp):
GATCT
Left flanking sequence: Indices 206410 -- 206909
AGAGAGGGGCGGGCCCCTCCCCTCCCCTCTCTATAGATCTCGATCGAGATCGATCAGATCTGGCA
GATCTAGTTGATCGGGGCCCTCTCTCTATATGGATATGGGCCCAGATCTCTAGGGGGGCCTACTA
GATATAGCTATATATAGAGAGAAATGGGGGAGAGGAGCCCGGGGTCGCCATATCTAGACTCTATA
TAGGGGGGTCGCGATATAGAGAGAATCAATCCCCCTCTCTCCGGGCCATCGGATAGATCGGATCG
ATTATATACGTGACATGAGTGATGTGATCATCTCCATATCTATATATAGATGGGTCAGTCAGTTC
AGAGATGGATAGCGATAGATATAGGGGAGGGGTATCTATGGATTGGATAGGGCGCCGACCCCCCG
GGCCATCTATTGATATTAATAGTTAGCAGTTAGCGGTTAGCGGCCAGTCGGGAGCGGAAGGATAT
AGATATATGGCGGTCATGCCAAATAGATCCCCTCCCCTCTATATA
Right flanking sequence: Indices 206960 -- 207459
ATATGGCGCCCCCCCATATCATATAGATTTAGGGAGAGCGCCGGGGGAAGCAGGGGTCCCTATAT
GTATATGGCATAGCTCGGGCCCGGGCCGGGACAACCTAGATTCTAATCTAATGGCACCACCATCC
GCCTCACATAGATATAGTTCAGGGTAGGGCGTCCACCTCGATATCTAGATAGGGCGGGACTATCT
GATCAGGGTGGGGTGCCGACGGGACTTTCTAGGATGGTATAGTAGGGGCACCTACGATTGGGATT
GGGATTCGCCCGAATAGAAGGCCCCGGAGCCTGAGAGTTTCAGTTCTATAGCTACCGGATTAGAA
ATCAGAGCGAAGGGTGCAGAGAATGCAAGAAGCTCGCTCCTCCGCTCGAAGCAGTGAGTCGAGGG
TCATCCAGGTTTCTAGCTCTCAGTAGTTCTCAGCGGGGCGGCTTATCTTCCTATCTCTCCGCCGG
CAGACCAACCCCTCCCCCTCCTTCCTAGAGTAGAGGCGCCATATC
Found at i:208430 original size:14 final size:14
Alignment explanation
Indices: 208411--208437 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
208401 GTATTCTCCC
208411 CCCCCCCTCTCTCA
1 CCCCCCCTCTCTCA
208425 CCCCCCCTCTCTC
1 CCCCCCCTCTCTC
208438 TATATGGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.74, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCCCCCTCTCTCA
Left flanking sequence: Indices 207911 -- 208410
CCCAACTGAAGCGGCCCTGAACTCGGGCCGACATCCCGGATCGGCTTCCCCCCCCCCCCCTACTA
CTATACCACCCCCATCAAGCGGATAGTTGAGGAGGGGGAGGGGACTTCTAGTCTATAGTCAGGGC
GGCTATATATAGAGAGTTCTAGTTGGCACTTAGAGTTCTAGTTCCAGTTGGCATTGGGCCGATCT
GGGGCCCCGACGGAGATGCTATATCTACCCACCCGGCAATGCCATATCTATAGTTCAGGGCGGGA
CGCCTATATTGTATTGATTCCAGAGGGGGCAACTCTCTCTATCCATAGTCGGCACCCCCTCCCCC
ACTTAGATAGGCGATGGATCGAGGAAAACTAGCTTAGCCCTCTATATCTATATATGGCGACCCCA
CCGTACTATAGAGTAGTCAGGGCCCCTATCTAGTTGGCGATGTTGGCGCGGGGGGCATCCTATCT
CTCTATCCCCCCCCTCTCTATTCTATCTTATCTCGGTATTCTCCC
Right flanking sequence: Indices 208438 -- 208937
TATATGGGTGAGAGAGGGGGGGCGAGAGAGGGGGGGTGTAGAGAATTCTCCCGAGAGCGAATACC
CGAGAGAATAGATTGAAGGGGAGATTGAAGGGGGATTGGCGCGAGTCCCTCGATCTGCATGACAT
GAATCAGAGAAATCTATAGGCCGCCTCATATATATATATATATATATCTCTCAACCTAACAGGGC
CATACCCGGATCGGATGCGGAAGTGGAGTGCCTGCCCGCATATAGATAGATGGGCCGTGACCCAA
CCGGAACCCTGAACTATGGATATGGCGACGGGACGATGATATAATAGTAGACCGTAGACCATCGG
CCATGATGATATAACGGCACTGTCCGATAGGACGGAGTTAACCTTTAGCTACTCGATCGCGGGGG
CCCTCTCCCATCTCTCTCCGCCAGATAGAGAGATTCTATACGCCCTATGAACTGATAGGCCGAAT
TCTAAGAATGAGGACGAAATCTATGGATCGACTATCAGAATCTAT
Found at i:208438 original size:16 final size:15
Alignment explanation
Indices: 208405--208437 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
208395 ATCTCGGTAT
208405 TCTCCCCCCCCCCTC
1 TCTCCCCCCCCCCTC
*
208420 TCT-CACCCCCCCTC
1 TCTCCCCCCCCCCTC
208434 TCTC
1 TCTC
208438 TATATGGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
14 13 0.81
15 3 0.19
ACGTcount: A:0.03, C:0.73, G:0.00, T:0.24
Consensus pattern (15 bp):
TCTCCCCCCCCCCTC
Left flanking sequence: Indices 207905 -- 208404
CCCTACCCCAACTGAAGCGGCCCTGAACTCGGGCCGACATCCCGGATCGGCTTCCCCCCCCCCCC
CTACTACTATACCACCCCCATCAAGCGGATAGTTGAGGAGGGGGAGGGGACTTCTAGTCTATAGT
CAGGGCGGCTATATATAGAGAGTTCTAGTTGGCACTTAGAGTTCTAGTTCCAGTTGGCATTGGGC
CGATCTGGGGCCCCGACGGAGATGCTATATCTACCCACCCGGCAATGCCATATCTATAGTTCAGG
GCGGGACGCCTATATTGTATTGATTCCAGAGGGGGCAACTCTCTCTATCCATAGTCGGCACCCCC
TCCCCCACTTAGATAGGCGATGGATCGAGGAAAACTAGCTTAGCCCTCTATATCTATATATGGCG
ACCCCACCGTACTATAGAGTAGTCAGGGCCCCTATCTAGTTGGCGATGTTGGCGCGGGGGGCATC
CTATCTCTCTATCCCCCCCCTCTCTATTCTATCTTATCTCGGTAT
Right flanking sequence: Indices 208438 -- 208937
TATATGGGTGAGAGAGGGGGGGCGAGAGAGGGGGGGTGTAGAGAATTCTCCCGAGAGCGAATACC
CGAGAGAATAGATTGAAGGGGAGATTGAAGGGGGATTGGCGCGAGTCCCTCGATCTGCATGACAT
GAATCAGAGAAATCTATAGGCCGCCTCATATATATATATATATATATCTCTCAACCTAACAGGGC
CATACCCGGATCGGATGCGGAAGTGGAGTGCCTGCCCGCATATAGATAGATGGGCCGTGACCCAA
CCGGAACCCTGAACTATGGATATGGCGACGGGACGATGATATAATAGTAGACCGTAGACCATCGG
CCATGATGATATAACGGCACTGTCCGATAGGACGGAGTTAACCTTTAGCTACTCGATCGCGGGGG
CCCTCTCCCATCTCTCTCCGCCAGATAGAGAGATTCTATACGCCCTATGAACTGATAGGCCGAAT
TCTAAGAATGAGGACGAAATCTATGGATCGACTATCAGAATCTAT
Found at i:208480 original size:15 final size:14
Alignment explanation
Indices: 208443--208481 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
208433 CTCTCTATAT
208443 GGGTGAGAGAGGGG
1 GGGTGAGAGAGGGG
*
208457 GGGCGAGAGAGGGG
1 GGGTGAGAGAGGGG
208471 GGGTGTAGAGA
1 GGGTG-AGAGA
208482 ATTCTCCCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.23, C:0.03, G:0.67, T:0.08
Consensus pattern (14 bp):
GGGTGAGAGAGGGG
Left flanking sequence: Indices 207943 -- 208442
ATCCCGGATCGGCTTCCCCCCCCCCCCCTACTACTATACCACCCCCATCAAGCGGATAGTTGAGG
AGGGGGAGGGGACTTCTAGTCTATAGTCAGGGCGGCTATATATAGAGAGTTCTAGTTGGCACTTA
GAGTTCTAGTTCCAGTTGGCATTGGGCCGATCTGGGGCCCCGACGGAGATGCTATATCTACCCAC
CCGGCAATGCCATATCTATAGTTCAGGGCGGGACGCCTATATTGTATTGATTCCAGAGGGGGCAA
CTCTCTCTATCCATAGTCGGCACCCCCTCCCCCACTTAGATAGGCGATGGATCGAGGAAAACTAG
CTTAGCCCTCTATATCTATATATGGCGACCCCACCGTACTATAGAGTAGTCAGGGCCCCTATCTA
GTTGGCGATGTTGGCGCGGGGGGCATCCTATCTCTCTATCCCCCCCCTCTCTATTCTATCTTATC
TCGGTATTCTCCCCCCCCCCTCTCTCACCCCCCCTCTCTCTATAT
Right flanking sequence: Indices 208482 -- 208981
ATTCTCCCGAGAGCGAATACCCGAGAGAATAGATTGAAGGGGAGATTGAAGGGGGATTGGCGCGA
GTCCCTCGATCTGCATGACATGAATCAGAGAAATCTATAGGCCGCCTCATATATATATATATATA
TATCTCTCAACCTAACAGGGCCATACCCGGATCGGATGCGGAAGTGGAGTGCCTGCCCGCATATA
GATAGATGGGCCGTGACCCAACCGGAACCCTGAACTATGGATATGGCGACGGGACGATGATATAA
TAGTAGACCGTAGACCATCGGCCATGATGATATAACGGCACTGTCCGATAGGACGGAGTTAACCT
TTAGCTACTCGATCGCGGGGGCCCTCTCCCATCTCTCTCCGCCAGATAGAGAGATTCTATACGCC
CTATGAACTGATAGGCCGAATTCTAAGAATGAGGACGAAATCTATGGATCGACTATCAGAATCTA
TATGGAGAACCGACCCATAGATATCGTATTGACCGAGTAGACCCC
Found at i:208527 original size:12 final size:12
Alignment explanation
Indices: 208512--208540 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
208502 CCGAGAGAAT
208512 AGATTGAAGGGG
1 AGATTGAAGGGG
208524 AGATTGAAGGGG
1 AGATTGAAGGGG
208536 -GATTG
1 AGATTG
208541 GCGCGAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.48, T:0.21
Consensus pattern (12 bp):
AGATTGAAGGGG
Left flanking sequence: Indices 208012 -- 208511
GGAGGGGACTTCTAGTCTATAGTCAGGGCGGCTATATATAGAGAGTTCTAGTTGGCACTTAGAGT
TCTAGTTCCAGTTGGCATTGGGCCGATCTGGGGCCCCGACGGAGATGCTATATCTACCCACCCGG
CAATGCCATATCTATAGTTCAGGGCGGGACGCCTATATTGTATTGATTCCAGAGGGGGCAACTCT
CTCTATCCATAGTCGGCACCCCCTCCCCCACTTAGATAGGCGATGGATCGAGGAAAACTAGCTTA
GCCCTCTATATCTATATATGGCGACCCCACCGTACTATAGAGTAGTCAGGGCCCCTATCTAGTTG
GCGATGTTGGCGCGGGGGGCATCCTATCTCTCTATCCCCCCCCTCTCTATTCTATCTTATCTCGG
TATTCTCCCCCCCCCCTCTCTCACCCCCCCTCTCTCTATATGGGTGAGAGAGGGGGGGCGAGAGA
GGGGGGGTGTAGAGAATTCTCCCGAGAGCGAATACCCGAGAGAAT
Right flanking sequence: Indices 208541 -- 209040
GCGCGAGTCCCTCGATCTGCATGACATGAATCAGAGAAATCTATAGGCCGCCTCATATATATATA
TATATATATCTCTCAACCTAACAGGGCCATACCCGGATCGGATGCGGAAGTGGAGTGCCTGCCCG
CATATAGATAGATGGGCCGTGACCCAACCGGAACCCTGAACTATGGATATGGCGACGGGACGATG
ATATAATAGTAGACCGTAGACCATCGGCCATGATGATATAACGGCACTGTCCGATAGGACGGAGT
TAACCTTTAGCTACTCGATCGCGGGGGCCCTCTCCCATCTCTCTCCGCCAGATAGAGAGATTCTA
TACGCCCTATGAACTGATAGGCCGAATTCTAAGAATGAGGACGAAATCTATGGATCGACTATCAG
AATCTATATGGAGAACCGACCCATAGATATCGTATTGACCGAGTAGACCCCCCCAGAGATATTTC
TATATGGCATTGATCACGACCACCTAGAGATCTGATCCCCCATCT
Found at i:210858 original size:13 final size:13
Alignment explanation
Indices: 210818--210858 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
210808 TAGAGAGGGG
210818 CATCATCCATCCC
1 CATCATCCATCCC
*
210831 CAT-ATATCA-CCC
1 CATCAT-CCATCCC
210843 CATCATCCATCCC
1 CATCATCCATCCC
210856 CAT
1 CAT
210859 GTGGTGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.27, C:0.49, G:0.00, T:0.24
Consensus pattern (13 bp):
CATCATCCATCCC
Left flanking sequence: Indices 210318 -- 210817
ATATCTGGCAGATCTGGGCGCCCGGGGTGCCATGCGGGTCGGGCCCCATATCTAGATAGGGCGCC
GATGGGGGGCAGCCCTATATATAGAACTTCGACGAGAAAGAAAAATGCTAACATGGATTCGGGGC
TACTCGGTAAATCCCCCATCGGGGGTCGGCCCTCGGTAGTCCACGAGACCCCCCCTCTCTAGATA
TGGGAGAGAGGGGATCTATAGGCCTGATGGTCCTCATTCTCATCGTATTACGTATAGAATCTATC
TATCCGGATCGGTTGGTGTAGAGCAGGCAAGGCAAAGGCAATATATATCTACTATCAATCATACG
GAGTCCAGAGAGAAGGAGAGAATATCATTATAGCCAGTAGGCTCTCGAGATCTATATCTCAGATC
TTAGATCTACCGCTCACCCCATGTCATATCTATCTCCATAGCCGCCCTCTCCCGTTGCGTTGCCA
ATGGGAGAACCGGGGGTCCGGGCCGTCGGCCTATATAGAGAGGGG
Right flanking sequence: Indices 210859 -- 211358
GTGGTGCCATAGATCTAGATAGGGCCACCGGTGGACCCCCCATAGTTCCAGAGGGCCCTATCTAT
AGAAGGCGGATGCACCTCGTCAGTCCAGTGCCTATATAGATGGGTCAGTTGCTAGGTTGCTAGCT
CGCTCGAAAGATCAGTTGCTCGAGAGATCAGTATCTAGACTTTCTATGGGGTGGGGGGCACCCCC
TAGAGAGATATGGTGATTTCTCGATTGGGGGGGAGGGGTGAGCGTAGTATATAGAGTTTGGCACT
CCCTCTCCCCTCTCTCTCTAGATTATGGTGATTGCCATATCGGGGGAAATCGTCTATCTATACTC
CCTATCTCTTCTCCCATATAGATAGAGGGGGGGGGGCGGGGGACCCTAGCATATGGATAGAGTAG
AGGGGCCTAACCCGGACGCCCCCAGATGGAGATGCAGAGAATAGAGAAGGGGGGGCCTCCGCCTC
TGCCAATGCAGGGGCGACTCTTTATAGTCTACAGGGAACTATTGA
Found at i:211011 original size:16 final size:16
Alignment explanation
Indices: 210990--211020 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
210980 TTGCTAGCTC
210990 GCTCGAAAGATCAGTT
1 GCTCGAAAGATCAGTT
*
211006 GCTCGAGAGATCAGT
1 GCTCGAAAGATCAGT
211021 ATCTAGACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (16 bp):
GCTCGAAAGATCAGTT
Left flanking sequence: Indices 210490 -- 210989
ACGAGACCCCCCCTCTCTAGATATGGGAGAGAGGGGATCTATAGGCCTGATGGTCCTCATTCTCA
TCGTATTACGTATAGAATCTATCTATCCGGATCGGTTGGTGTAGAGCAGGCAAGGCAAAGGCAAT
ATATATCTACTATCAATCATACGGAGTCCAGAGAGAAGGAGAGAATATCATTATAGCCAGTAGGC
TCTCGAGATCTATATCTCAGATCTTAGATCTACCGCTCACCCCATGTCATATCTATCTCCATAGC
CGCCCTCTCCCGTTGCGTTGCCAATGGGAGAACCGGGGGTCCGGGCCGTCGGCCTATATAGAGAG
GGGCATCATCCATCCCCATATATCACCCCATCATCCATCCCCATGTGGTGCCATAGATCTAGATA
GGGCCACCGGTGGACCCCCCATAGTTCCAGAGGGCCCTATCTATAGAAGGCGGATGCACCTCGTC
AGTCCAGTGCCTATATAGATGGGTCAGTTGCTAGGTTGCTAGCTC
Right flanking sequence: Indices 211021 -- 211520
ATCTAGACTTTCTATGGGGTGGGGGGCACCCCCTAGAGAGATATGGTGATTTCTCGATTGGGGGG
GAGGGGTGAGCGTAGTATATAGAGTTTGGCACTCCCTCTCCCCTCTCTCTCTAGATTATGGTGAT
TGCCATATCGGGGGAAATCGTCTATCTATACTCCCTATCTCTTCTCCCATATAGATAGAGGGGGG
GGGGCGGGGGACCCTAGCATATGGATAGAGTAGAGGGGCCTAACCCGGACGCCCCCAGATGGAGA
TGCAGAGAATAGAGAAGGGGGGGCCTCCGCCTCTGCCAATGCAGGGGCGACTCTTTATAGTCTAC
AGGGAACTATTGATCGCTTCGCTCTTGATCGAACCCCCTATCTCTATTCATTCGCCGGGCCGGGT
CATCTCTCTCATCCGAGCCTCTCTATAGTTCTGTGATGCCCTATCCTCTGCTCATCCGAGCTTTG
ATGTGATGCCCTATCCCTATATATCCGATAGTTCCTATTCCAGTT
Found at i:213922 original size:10 final size:10
Alignment explanation
Indices: 213907--214186 Score: 134
Period size: 10 Copynumber: 27.8 Consensus size: 10
213897 CTGAATGAAA
213907 CTCTCTCTAT
1 CTCTCTCTAT
213917 CTCTCTCTAT
1 CTCTCTCTAT
213927 CTCTCTCTATAT
1 CTCTCTC--TAT
* *
213939 CTCTATCTGAA
1 CTCTCTCT-AT
* ** *
213950 CTCTGAATGAAA
1 CTCT--CTCTAT
*
213962 CTCTCTATAT
1 CTCTCTCTAT
*
213972 CTCACTCT-T
1 CTCTCTCTAT
**
213981 CAGTCTCT-T
1 CTCTCTCTAT
213990 CTCTCTCTAT
1 CTCTCTCTAT
214000 CTCTCTCTAT
1 CTCTCTCTAT
*
214010 ATCTCTC--T
1 CTCTCTCTAT
214018 CTCTCTCTAT
1 CTCTCTCTAT
214028 CTTCAGTCTCT-T
1 C-TC--TCTCTAT
214040 CTCTCTCTAT
1 CTCTCTCTAT
214050 CTCTCTCTAT
1 CTCTCTCTAT
*
214060 ATCTCTC--T
1 CTCTCTCTAT
*
214068 CTCTCTATAT
1 CTCTCTCTAT
*
214078 CTCACTCT-T
1 CTCTCTCTAT
*
214087 CACTCTC--T
1 CTCTCTCTAT
*
214095 CTCTCTCTCT
1 CTCTCTCTAT
* *
214105 CTTTCTATAT
1 CTCTCTCTAT
*
214115 CTGAACTCTATAT
1 CT---CTCTCTAT
*
214128 CTCGACTCTAT
1 CTC-TCTCTAT
* *
214139 CTGTATC--T
1 CTCTCTCTAT
*
214147 CTCTCTATAT
1 CTCTCTCTAT
214157 CTCTCTCTATAT
1 CTCTCTC--TAT
214169 CTCTCTCTAT
1 CTCTCTCTAT
*
214179 ATCTCTCT
1 CTCTCTCT
214187 CTATATCTAT
Statistics
Matches: 207, Mismatches: 39, Indels: 48
0.70 0.13 0.16
Matches are distributed among these distances:
8 25 0.12
9 24 0.12
10 99 0.48
11 16 0.08
12 27 0.13
13 16 0.08
ACGTcount: A:0.15, C:0.35, G:0.03, T:0.47
Consensus pattern (10 bp):
CTCTCTCTAT
Left flanking sequence: Indices 213407 -- 213906
TCAAGTTGTCAATAAGAGAATAGAATCGGGGTTTGAATCGGAAATCACTTACCCCTATCGTATAA
TAGAGATGGAGATGGATGGACCTATGCCCAATGTAGAGAAGAGAAATTTCTATATACATTCCGAC
TGGCCCGTAACTGTGGTGAGAGAGATGGATCCGATCCCATATATAGATAAGGGCGCTGCCAACCC
CATCTATCTGCGCTTCGCTGGGCCCATGGGGATCCGATCCCATATATAGATAGGGCGCTGGGCCT
ATCTATAGACTCTATATAGGGGAGAGATGCTGGTCCCATCGGGGATCCGCTGGTCCCATCTATTC
TCTCTATAGGGGATCCCATATATAGATAGGGCGCTGCCAACCCCATCTATCTGCGCTTCGCTGGG
CCCATCGGGGATCCGATCCGCTTTGCTGCCATATAGAGAATCTAGATGGGGGAGAGGGATATTCG
CTGGGGGATCCGCTGGTCCCATCTCTATCTGAACTCTGAATGAAA
Right flanking sequence: Indices 214187 -- 214686
CTATATCTATATCTCTCGATCTATCTATATCTCTATGGGCGACCCCGGCGCATACAGAAATGTTT
TCCATTCCTCTTGTCAATCAGTAGGTTGTTCGATCCGGTTATGATATGACCGTCAATCATGCTTG
TTCGATCTTGTTCCATGGTCATTCATGCCATATAGAGATAGGGGCGGGTCACCGACATACATAAG
GGCCCCTAGATAGATATGGGGCCGTGCTTTCGATCCGATGTTATGACATAGTGTAATCACGTTAG
ATCGAGATGGCGATTCGGGAGAATTTTTCTTTATTTTCGGAAGGTGGGACGATGTGACATAAAAT
GATGGGCAAGCTTTGACTTGCATCATCGTGATTGGGATGCCGAATCGAGGAAGATACCAAGGTAC
TTCACGCCATCCTCGTCGGTTTTAATCAACGGTCACCGGCCCTAGATATAGATAGAGACTACCAT
TTCCTCTAGGTCGAGGCCGATCTAATCACGAGAGATACGATTCCC
Found at i:213996 original size:2 final size:2
Alignment explanation
Indices: 213984--214106 Score: 101
Period size: 2 Copynumber: 63.5 Consensus size: 2
213974 CACTCTTCAG
* * *
213984 TC TC T- TC TC TC TC TA TC TC TC TC TA TA TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* ** * * *
214025 TA TC T- TC AG TC TC T- TC TC TC TC TA TC TC TC TC TA TA TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * *
214065 TC TC TC TC TA TA TC TC AC TC T- TC AC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
214106 T
1 T
214107 TTCTATATCT
Statistics
Matches: 97, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
1 4 0.04
2 93 0.96
ACGTcount: A:0.10, C:0.40, G:0.01, T:0.50
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 213484 -- 213983
TGGATGGACCTATGCCCAATGTAGAGAAGAGAAATTTCTATATACATTCCGACTGGCCCGTAACT
GTGGTGAGAGAGATGGATCCGATCCCATATATAGATAAGGGCGCTGCCAACCCCATCTATCTGCG
CTTCGCTGGGCCCATGGGGATCCGATCCCATATATAGATAGGGCGCTGGGCCTATCTATAGACTC
TATATAGGGGAGAGATGCTGGTCCCATCGGGGATCCGCTGGTCCCATCTATTCTCTCTATAGGGG
ATCCCATATATAGATAGGGCGCTGCCAACCCCATCTATCTGCGCTTCGCTGGGCCCATCGGGGAT
CCGATCCGCTTTGCTGCCATATAGAGAATCTAGATGGGGGAGAGGGATATTCGCTGGGGGATCCG
CTGGTCCCATCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCTCTCTATCTCTCTCTATAT
CTCTATCTGAACTCTGAATGAAACTCTCTATATCTCACTCTTCAG
Right flanking sequence: Indices 214107 -- 214606
TTCTATATCTGAACTCTATATCTCGACTCTATCTGTATCTCTCTCTATATCTCTCTCTATATCTC
TCTCTATATCTCTCTCTATATCTATATCTCTCGATCTATCTATATCTCTATGGGCGACCCCGGCG
CATACAGAAATGTTTTCCATTCCTCTTGTCAATCAGTAGGTTGTTCGATCCGGTTATGATATGAC
CGTCAATCATGCTTGTTCGATCTTGTTCCATGGTCATTCATGCCATATAGAGATAGGGGCGGGTC
ACCGACATACATAAGGGCCCCTAGATAGATATGGGGCCGTGCTTTCGATCCGATGTTATGACATA
GTGTAATCACGTTAGATCGAGATGGCGATTCGGGAGAATTTTTCTTTATTTTCGGAAGGTGGGAC
GATGTGACATAAAATGATGGGCAAGCTTTGACTTGCATCATCGTGATTGGGATGCCGAATCGAGG
AAGATACCAAGGTACTTCACGCCATCCTCGTCGGTTTTAATCAAC
Found at i:213997 original size:55 final size:55
Alignment explanation
Indices: 213883--214051 Score: 183
Period size: 55 Copynumber: 3.2 Consensus size: 55
213873 GCTGGTCCCA
* * *
213883 TCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCTCTCTATC--TCTCTCTATA
1 TCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCACTCT-TCAGTCTCT-TCTC
*
213938 TCTCTATCTGAACTCTGAATGAAACTCTCTATATCTCACTCTTCAGTCTCTTCTC
1 TCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCACTCTTCAGTCTCTTCTC
** * *
213993 TCTCTATCT---CTCTCTAT--ATCTCTCTCTCTCTCTA-TCTTCAGTCTCTTCTC
1 TCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTC-ACTCTTCAGTCTCTTCTC
214043 TCTCTATCT
1 TCTCTATCT
214052 CTCTCTATAT
Statistics
Matches: 102, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
50 37 0.36
51 1 0.01
52 6 0.06
54 2 0.02
55 51 0.50
56 5 0.05
ACGTcount: A:0.18, C:0.33, G:0.05, T:0.44
Consensus pattern (55 bp):
TCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCACTCTTCAGTCTCTTCTC
Left flanking sequence: Indices 213383 -- 213882
AAGTCTCATTGTCACACTTGTATGTCAAGTTGTCAATAAGAGAATAGAATCGGGGTTTGAATCGG
AAATCACTTACCCCTATCGTATAATAGAGATGGAGATGGATGGACCTATGCCCAATGTAGAGAAG
AGAAATTTCTATATACATTCCGACTGGCCCGTAACTGTGGTGAGAGAGATGGATCCGATCCCATA
TATAGATAAGGGCGCTGCCAACCCCATCTATCTGCGCTTCGCTGGGCCCATGGGGATCCGATCCC
ATATATAGATAGGGCGCTGGGCCTATCTATAGACTCTATATAGGGGAGAGATGCTGGTCCCATCG
GGGATCCGCTGGTCCCATCTATTCTCTCTATAGGGGATCCCATATATAGATAGGGCGCTGCCAAC
CCCATCTATCTGCGCTTCGCTGGGCCCATCGGGGATCCGATCCGCTTTGCTGCCATATAGAGAAT
CTAGATGGGGGAGAGGGATATTCGCTGGGGGATCCGCTGGTCCCA
Right flanking sequence: Indices 214052 -- 214551
CTCTCTATATCTCTCTCTCTCTATATCTCACTCTTCACTCTCTCTCTCTCTCTCTTTCTATATCT
GAACTCTATATCTCGACTCTATCTGTATCTCTCTCTATATCTCTCTCTATATCTCTCTCTATATC
TCTCTCTATATCTATATCTCTCGATCTATCTATATCTCTATGGGCGACCCCGGCGCATACAGAAA
TGTTTTCCATTCCTCTTGTCAATCAGTAGGTTGTTCGATCCGGTTATGATATGACCGTCAATCAT
GCTTGTTCGATCTTGTTCCATGGTCATTCATGCCATATAGAGATAGGGGCGGGTCACCGACATAC
ATAAGGGCCCCTAGATAGATATGGGGCCGTGCTTTCGATCCGATGTTATGACATAGTGTAATCAC
GTTAGATCGAGATGGCGATTCGGGAGAATTTTTCTTTATTTTCGGAAGGTGGGACGATGTGACAT
AAAATGATGGGCAAGCTTTGACTTGCATCATCGTGATTGGGATGC
Found at i:214006 original size:12 final size:12
Alignment explanation
Indices: 213989--214194 Score: 125
Period size: 12 Copynumber: 17.1 Consensus size: 12
213979 TTCAGTCTCT
213989 TCTCTCTCTATC
1 TCTCTCTCTATC
*
214001 TCTCTCTATATC
1 TCTCTCTCTATC
*
214013 TCTCTCTCTCTC
1 TCTCTCTCTATC
* *
214025 TATCT-TCAGTCTC
1 TCTCTCTC--TATC
214038 TTCTCTCTCTATC
1 -TCTCTCTCTATC
*
214051 TCTCTCTATATCTC
1 TCTCTCTCTA--TC
*
214065 TCTCTCTCTATA
1 TCTCTCTCTATC
*
214077 TCTCACTCT-TC
1 TCTCTCTCTATC
*
214088 ACTCTCTC--TC
1 TCTCTCTCTATC
*
214098 TCTCTCTCTTTC
1 TCTCTCTCTATC
* * **
214110 TATATCTGAACTC
1 TCTCTCTCTA-TC
* * *
214123 TATATCTCGA-C
1 TCTCTCTCTATC
* *
214134 TCTATCTGTATC
1 TCTCTCTCTATC
*
214146 TCTCTCTATATC
1 TCTCTCTCTATC
*
214158 TCTCTCTATATC
1 TCTCTCTCTATC
*
214170 TCTCTCTATATC
1 TCTCTCTCTATC
*
214182 TCTCTCTATATC
1 TCTCTCTCTATC
214194 T
1 T
214195 ATATCTCTCG
Statistics
Matches: 158, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
10 9 0.06
11 17 0.11
12 98 0.62
13 17 0.11
14 15 0.09
15 2 0.01
ACGTcount: A:0.14, C:0.35, G:0.02, T:0.49
Consensus pattern (12 bp):
TCTCTCTCTATC
Left flanking sequence: Indices 213489 -- 213988
GGACCTATGCCCAATGTAGAGAAGAGAAATTTCTATATACATTCCGACTGGCCCGTAACTGTGGT
GAGAGAGATGGATCCGATCCCATATATAGATAAGGGCGCTGCCAACCCCATCTATCTGCGCTTCG
CTGGGCCCATGGGGATCCGATCCCATATATAGATAGGGCGCTGGGCCTATCTATAGACTCTATAT
AGGGGAGAGATGCTGGTCCCATCGGGGATCCGCTGGTCCCATCTATTCTCTCTATAGGGGATCCC
ATATATAGATAGGGCGCTGCCAACCCCATCTATCTGCGCTTCGCTGGGCCCATCGGGGATCCGAT
CCGCTTTGCTGCCATATAGAGAATCTAGATGGGGGAGAGGGATATTCGCTGGGGGATCCGCTGGT
CCCATCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCTCTCTATCTCTCTCTATATCTCTA
TCTGAACTCTGAATGAAACTCTCTATATCTCACTCTTCAGTCTCT
Right flanking sequence: Indices 214195 -- 214694
ATATCTCTCGATCTATCTATATCTCTATGGGCGACCCCGGCGCATACAGAAATGTTTTCCATTCC
TCTTGTCAATCAGTAGGTTGTTCGATCCGGTTATGATATGACCGTCAATCATGCTTGTTCGATCT
TGTTCCATGGTCATTCATGCCATATAGAGATAGGGGCGGGTCACCGACATACATAAGGGCCCCTA
GATAGATATGGGGCCGTGCTTTCGATCCGATGTTATGACATAGTGTAATCACGTTAGATCGAGAT
GGCGATTCGGGAGAATTTTTCTTTATTTTCGGAAGGTGGGACGATGTGACATAAAATGATGGGCA
AGCTTTGACTTGCATCATCGTGATTGGGATGCCGAATCGAGGAAGATACCAAGGTACTTCACGCC
ATCCTCGTCGGTTTTAATCAACGGTCACCGGCCCTAGATATAGATAGAGACTACCATTTCCTCTA
GGTCGAGGCCGATCTAATCACGAGAGATACGATTCCCTCCAGCCA
Found at i:214031 original size:50 final size:50
Alignment explanation
Indices: 213977--214176 Score: 215
Period size: 50 Copynumber: 3.9 Consensus size: 50
213967 TATATCTCAC
213977 TCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTCTA
1 TCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTCTA
*
214027 TCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTATA
1 TCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTCTA
* * * * * *
214077 TC-TCACTCTTCACTCTCTCTCTCTCTCTCTTTCTATATCTGAACTCTATATCTCGA
1 TCTTCAGTC-T--CT-TCTCTCTCTATCTCTCTCTATATCT---CTCTCTCTCTCTA
* * *
214133 CTCTATCTGTATC-TCTCTCTATATCTCTCTCTATATCTCTCTCT
1 -TCT-TCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCT
214177 ATATCTCTCT
Statistics
Matches: 125, Mismatches: 15, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
49 5 0.04
50 52 0.42
51 5 0.04
52 2 0.02
53 23 0.18
54 22 0.18
56 10 0.08
57 2 0.02
58 1 0.01
59 3 0.02
ACGTcount: A:0.13, C:0.36, G:0.03, T:0.48
Consensus pattern (50 bp):
TCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTCTA
Left flanking sequence: Indices 213477 -- 213976
ATGGAGATGGATGGACCTATGCCCAATGTAGAGAAGAGAAATTTCTATATACATTCCGACTGGCC
CGTAACTGTGGTGAGAGAGATGGATCCGATCCCATATATAGATAAGGGCGCTGCCAACCCCATCT
ATCTGCGCTTCGCTGGGCCCATGGGGATCCGATCCCATATATAGATAGGGCGCTGGGCCTATCTA
TAGACTCTATATAGGGGAGAGATGCTGGTCCCATCGGGGATCCGCTGGTCCCATCTATTCTCTCT
ATAGGGGATCCCATATATAGATAGGGCGCTGCCAACCCCATCTATCTGCGCTTCGCTGGGCCCAT
CGGGGATCCGATCCGCTTTGCTGCCATATAGAGAATCTAGATGGGGGAGAGGGATATTCGCTGGG
GGATCCGCTGGTCCCATCTCTATCTGAACTCTGAATGAAACTCTCTCTATCTCTCTCTATCTCTC
TCTATATCTCTATCTGAACTCTGAATGAAACTCTCTATATCTCAC
Right flanking sequence: Indices 214177 -- 214676
ATATCTCTCTCTATATCTATATCTCTCGATCTATCTATATCTCTATGGGCGACCCCGGCGCATAC
AGAAATGTTTTCCATTCCTCTTGTCAATCAGTAGGTTGTTCGATCCGGTTATGATATGACCGTCA
ATCATGCTTGTTCGATCTTGTTCCATGGTCATTCATGCCATATAGAGATAGGGGCGGGTCACCGA
CATACATAAGGGCCCCTAGATAGATATGGGGCCGTGCTTTCGATCCGATGTTATGACATAGTGTA
ATCACGTTAGATCGAGATGGCGATTCGGGAGAATTTTTCTTTATTTTCGGAAGGTGGGACGATGT
GACATAAAATGATGGGCAAGCTTTGACTTGCATCATCGTGATTGGGATGCCGAATCGAGGAAGAT
ACCAAGGTACTTCACGCCATCCTCGTCGGTTTTAATCAACGGTCACCGGCCCTAGATATAGATAG
AGACTACCATTTCCTCTAGGTCGAGGCCGATCTAATCACGAGAGA
Found at i:214221 original size:12 final size:12
Alignment explanation
Indices: 214133--214222 Score: 90
Period size: 12 Copynumber: 7.5 Consensus size: 12
214123 TATATCTCGA
*
214133 CTCTATCTGTAT
1 CTCTATCTATAT
*
214145 CTCTCTCTATAT
1 CTCTATCTATAT
*
214157 CTCTCTCTATAT
1 CTCTATCTATAT
*
214169 CTCTCTCTATAT
1 CTCTATCTATAT
*
214181 CTCTCTCTATAT
1 CTCTATCTATAT
* * **
214193 CTATATCTCTCG
1 CTCTATCTATAT
*
214205 ATCTATCTATAT
1 CTCTATCTATAT
214217 CTCTAT
1 CTCTAT
214223 GGGCGACCCC
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.19, C:0.30, G:0.02, T:0.49
Consensus pattern (12 bp):
CTCTATCTATAT
Left flanking sequence: Indices 213633 -- 214132
ATCCGATCCCATATATAGATAGGGCGCTGGGCCTATCTATAGACTCTATATAGGGGAGAGATGCT
GGTCCCATCGGGGATCCGCTGGTCCCATCTATTCTCTCTATAGGGGATCCCATATATAGATAGGG
CGCTGCCAACCCCATCTATCTGCGCTTCGCTGGGCCCATCGGGGATCCGATCCGCTTTGCTGCCA
TATAGAGAATCTAGATGGGGGAGAGGGATATTCGCTGGGGGATCCGCTGGTCCCATCTCTATCTG
AACTCTGAATGAAACTCTCTCTATCTCTCTCTATCTCTCTCTATATCTCTATCTGAACTCTGAAT
GAAACTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTC
TCTATCTTCAGTCTCTTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTATATCTCACTCTTC
ACTCTCTCTCTCTCTCTCTTTCTATATCTGAACTCTATATCTCGA
Right flanking sequence: Indices 214223 -- 214722
GGGCGACCCCGGCGCATACAGAAATGTTTTCCATTCCTCTTGTCAATCAGTAGGTTGTTCGATCC
GGTTATGATATGACCGTCAATCATGCTTGTTCGATCTTGTTCCATGGTCATTCATGCCATATAGA
GATAGGGGCGGGTCACCGACATACATAAGGGCCCCTAGATAGATATGGGGCCGTGCTTTCGATCC
GATGTTATGACATAGTGTAATCACGTTAGATCGAGATGGCGATTCGGGAGAATTTTTCTTTATTT
TCGGAAGGTGGGACGATGTGACATAAAATGATGGGCAAGCTTTGACTTGCATCATCGTGATTGGG
ATGCCGAATCGAGGAAGATACCAAGGTACTTCACGCCATCCTCGTCGGTTTTAATCAACGGTCAC
CGGCCCTAGATATAGATAGAGACTACCATTTCCTCTAGGTCGAGGCCGATCTAATCACGAGAGAT
ACGATTCCCTCCAGCCAGATATAGATCTAGGGGCGGGGGAGGGGA
Found at i:216581 original size:20 final size:20
Alignment explanation
Indices: 216556--216595 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
216546 TCTATAGGCC
*
216556 CCCCCAGATACTCTATATGG
1 CCCCCAGATACTCTAGATGG
*
216576 CCCCCAGATCCTCTAGATGG
1 CCCCCAGATACTCTAGATGG
216596 GGATGGGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.38, G:0.17, T:0.23
Consensus pattern (20 bp):
CCCCCAGATACTCTAGATGG
Left flanking sequence: Indices 216056 -- 216555
CTAGATCTCTATCTCTATCTGAACTCTATATCTATATCTAGATGGGGGCGGGCCTATCGGGGCCT
ACTATGACTATATACTATACTATACTACCAGCGATCGTAATCACTAGCAAGCAGTACTCCAGCGA
TCAGTAATGAGATGTATATAGATACAGGGTGGGGGCCGGGGAGCAGCGGGCCCTCGCTCCCAGCT
ATATAGAGATAGAGTAGGCCGTCGCCATAGATCTAATCTGAACTAGGAGGGGGGGGGGTGCGGCT
ATATGGAATAGATAGAGGCGCCGACGAAAGGTCATTATCTATATGCTATGCGCCCCCCCTCCTAT
ATAGATTCTCTATTCTCTATAGGCGCCCAGAGAGATATAGAGGGCCGCCTCCCCCCTAGATCATA
TCTATCTAGATGGGGATGGGCTTCATTGCCCTCGTCCTACCGCCATATCTCTATATAGGGTGCCG
ACTAGAGAGAGTCGCCCCGATAGGGCGTCCCTAGATCTATAGGCC
Right flanking sequence: Indices 216596 -- 217095
GGATGGGGGGTCGAGGAAGTTGAGGGCCTTCTCTATCGCATATCGCAGCGGCCGTCCTACGGTGG
AGTATAATATAAGCGCTGGTCCCCCTCGGCCTCCTAACGTCGACACGAGGGCGCCCCCTATCTAT
ATCTGGGGCGCTCTCCCTCGGCGGGCCCCCCCTCCCCCGCCCCCCCCCTAGATATCTGATCTGAT
CTCTATGGGGGCCCAGTTCGGGCGGCCCTATATAGATATGGGGCCCTATCTATATATGGGGCCTC
CCCTATATAGATAGGCGATAGGCCCCCTCTACCAGATCTCTGTAGATGGGGTTGGGGCCCCCTAT
CTATGGCTCTATTCCCAGGGGCACTCCCCCGAAATAGCGATCGTAGGGCCCCTATAGATCTAATC
TCTCTGGAGGGGGCCCCCGAAATCTCGATCCCTATATATCTAATCGGGGGCCCCCGAGAGAAATA
TATGTGCGATCGTAGGGCCCCTATAGATCTAATCTCTCTGGAGGG
Found at i:216837 original size:18 final size:18
Alignment explanation
Indices: 216814--216853 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
216804 CAGTTCGGGC
216814 GGCCCTATATAGATATGG
1 GGCCCTATATAGATATGG
* *
216832 GGCCCTATCTATATATGG
1 GGCCCTATATAGATATGG
216850 GGCC
1 GGCC
216854 TCCCCTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.28
Consensus pattern (18 bp):
GGCCCTATATAGATATGG
Left flanking sequence: Indices 216314 -- 216813
CTATATGGAATAGATAGAGGCGCCGACGAAAGGTCATTATCTATATGCTATGCGCCCCCCCTCCT
ATATAGATTCTCTATTCTCTATAGGCGCCCAGAGAGATATAGAGGGCCGCCTCCCCCCTAGATCA
TATCTATCTAGATGGGGATGGGCTTCATTGCCCTCGTCCTACCGCCATATCTCTATATAGGGTGC
CGACTAGAGAGAGTCGCCCCGATAGGGCGTCCCTAGATCTATAGGCCCCCCCAGATACTCTATAT
GGCCCCCAGATCCTCTAGATGGGGATGGGGGGTCGAGGAAGTTGAGGGCCTTCTCTATCGCATAT
CGCAGCGGCCGTCCTACGGTGGAGTATAATATAAGCGCTGGTCCCCCTCGGCCTCCTAACGTCGA
CACGAGGGCGCCCCCTATCTATATCTGGGGCGCTCTCCCTCGGCGGGCCCCCCCTCCCCCGCCCC
CCCCCTAGATATCTGATCTGATCTCTATGGGGGCCCAGTTCGGGC
Right flanking sequence: Indices 216854 -- 217353
TCCCCTATATAGATAGGCGATAGGCCCCCTCTACCAGATCTCTGTAGATGGGGTTGGGGCCCCCT
ATCTATGGCTCTATTCCCAGGGGCACTCCCCCGAAATAGCGATCGTAGGGCCCCTATAGATCTAA
TCTCTCTGGAGGGGGCCCCCGAAATCTCGATCCCTATATATCTAATCGGGGGCCCCCGAGAGAAA
TATATGTGCGATCGTAGGGCCCCTATAGATCTAATCTCTCTGGAGGGGGAGGCCCCTATATATAG
ATAGGCCCGCCCCCCCCCATATAGATATAGGGCCACATAGATATGGGGTCTAGGGGCTCTATCTG
GAGGGGGAGGAAGGATAGGGGCTCGACCCCCTCTAGATCTATGGGGTCGAGGGCCCCTATAGATA
TATGTATATGGGGCACTCGACCCCATAGATCTAGAGGGGGTCGAGGAAGTCGGCCGATAGGCCGA
GTGCCCCATATATAGATAGGGCCCCCCTAGATCTAGAGGGCTCTC
Found at i:219239 original size:5 final size:5
Alignment explanation
Indices: 219229--219273 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
219219 GGCCCCGGGC
219229 CTATT CTATT CTATT CTATT CTATT CTATT CTATT CTATT CTATT
1 CTATT CTATT CTATT CTATT CTATT CTATT CTATT CTATT CTATT
219274 AATATAGGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (5 bp):
CTATT
Left flanking sequence: Indices 218729 -- 219228
GATCTCTATAGATAGAGGGGGGGGGTCCTCGACCAACGGGAGAGGGGGGGCCCTATCTCGCCCAT
ATATCTAGATAGAGGGGCCCCCGACGGGCTCTATCTAGATAGTGGGGTGGGCGGCGTCTCTAGTC
GGCACCCTATAGATATGGAATATCTGTAGATGGCGACCCCCTATCTCTGGAGATCGAGGGAGAGG
GAAGACCTCGATCGAGTGCCCAGATAGAGATAGGGGGCCCTGGCCCGACCCCCTATGAAAGGGGG
GGGGGCGCCATATCTAGAATCTATCTAGGGGGGGGGGGCGCCCCATACCCCATATATTAGAGAGA
TCTATCGCTCACACCCCCACCCCATAGATCTTATAGTTATAGATAGGGTCGAGTGGCAGTTCGGG
CCGATGGCCTATAGATCTAGGGGCAGCTAGATTCAGTAGGCCGTCGCCCCCCGGGGCGCCCCTAT
ATTAAGTAAGAGCCCCCCCCCTATACTATAGATATGGCCCCGGGC
Right flanking sequence: Indices 219274 -- 219773
AATATAGGGGCACGAGAGATGGCGACGGCCTACTCTATATAGCTTCGCCCAACTAGAGATAGCCG
CCCCCGACCCCCTATATAGATCTGGATATGGGGTCTAGATATATGGCGGGGGAAGTCCTTATTTT
ATCTCGGGCATCAGGCGCTCTGTAGGAATCAGGTTTGGACCCTCGGCCTCCCGCCCTATCTATAT
ATGGGGTCGGCGCCCTATACCTATATCTATATATAGAAACCCCTATCTATACTCCATATGGCTTA
GCCTTATTTCCCTTCGGGTGGGTCTAACTCAATCCCCTTTCTGGCATGCTACGGTCCCTTGAGTC
TCTCGACGTCGGAGAATGGGAGATTCTCCCCCTTCGGTAAGCCAGATGGCCATATTGCAGAGTGC
ATTCCGTTGCACTTCCCCCTCGTTAAGGGGCGCACTCCGATACCGTTGATGTCCGATAGCTTTGA
TAGTAATGGCTGGATTGACCACTATCTCGTCCATCGAGTATAACG
Found at i:220107 original size:18 final size:18
Alignment explanation
Indices: 220084--220121 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
220074 AGAGGAATAG
220084 CCAAATCATTTCCTTATT
1 CCAAATCATTTCCTTATT
220102 CCAAATCATTTCCTTATT
1 CCAAATCATTTCCTTATT
220120 CC
1 CC
220122 GCTGTTCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (18 bp):
CCAAATCATTTCCTTATT
Left flanking sequence: Indices 219584 -- 220083
ACGGTCCCTTGAGTCTCTCGACGTCGGAGAATGGGAGATTCTCCCCCTTCGGTAAGCCAGATGGC
CATATTGCAGAGTGCATTCCGTTGCACTTCCCCCTCGTTAAGGGGCGCACTCCGATACCGTTGAT
GTCCGATAGCTTTGATAGTAATGGCTGGATTGACCACTATCTCGTCCATCGAGTATAACGGGGCA
AATGATGGTATAGCGATGAACATCGGGATAATACTAGGGAATATGGTCCGAATAATCTCTATAGT
CGTTCCGTGAACAATCCTTTGCGGGATCGGATTTCTTCTATAGTGAAAATGCCATGAAGCGCGAA
CCAACATCCGTGATACGAGAACCGAAATCAGAATTGGGAAGAAAAAGATATCATGATGTGAGTCA
ATGATTCCTTGCATCACAGGTGTTGCCGCGTCTTGAGATCCCAATTGCCATGGTTCCGCAGCATC
ACAAGGAGCGATTGTGAGGACCTTTAGGTACTCGGAGAGGAATAG
Right flanking sequence: Indices 220122 -- 220621
GCTGTTCTCTCCGATCTTTCGCTCCCGAAATCGAGAGACTCCCCGCCTCATTCTTCTACTCATAA
ATTGACCCCCTCCTTGCCCATCCTTTCTCCCAATCAATGCGCAGAACCCGGCTCTATCGGCCGAG
TACTCTCCCCTCGTCCTCCTCCCCCCCCCCCCCCTTCTATATAGATCTCTATATATCTATATAGA
TCTATATATATCTATATAGAGATCTATATAGATATGGGAGATAGGGGCCCCCTCTCTATGGCCCC
CCGATGGGGGAGAGAGGGGGCCTATAGATATAGGGGTGCCAACGCCGCCCTCTCCCCCATATGGA
GTCTAGGGGCATATAGACATCTAGGGGTCCTTCGTCGGACATACATGGATGCATCCATCTACCTC
CTATTTATTCTATACGTGATACAACTGATGACTGGTATCACGTATAGAATAGAAAAGGTGGATGG
ATGGCCCTATATCTATATAGGCCAACGGCCTATCTATATATGGGG
Found at i:220304 original size:10 final size:10
Alignment explanation
Indices: 220287--220349 Score: 81
Period size: 10 Copynumber: 6.1 Consensus size: 10
220277 CCCCCCCCCT
220287 TCTATATAGA
1 TCTATATAGA
* *
220297 TCTCTATATA
1 TCTATATAGA
220307 TCTATATAGA
1 TCTATATAGA
*
220317 TCTATATATA
1 TCTATATAGA
220327 TCTATATAGAGA
1 TCTATAT--AGA
220339 TCTATATAGA
1 TCTATATAGA
220349 T
1 T
220350 ATGGGAGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
10 36 0.80
12 9 0.20
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (10 bp):
TCTATATAGA
Left flanking sequence: Indices 219787 -- 220286
TATAGCGATGAACATCGGGATAATACTAGGGAATATGGTCCGAATAATCTCTATAGTCGTTCCGT
GAACAATCCTTTGCGGGATCGGATTTCTTCTATAGTGAAAATGCCATGAAGCGCGAACCAACATC
CGTGATACGAGAACCGAAATCAGAATTGGGAAGAAAAAGATATCATGATGTGAGTCAATGATTCC
TTGCATCACAGGTGTTGCCGCGTCTTGAGATCCCAATTGCCATGGTTCCGCAGCATCACAAGGAG
CGATTGTGAGGACCTTTAGGTACTCGGAGAGGAATAGCCAAATCATTTCCTTATTCCAAATCATT
TCCTTATTCCGCTGTTCTCTCCGATCTTTCGCTCCCGAAATCGAGAGACTCCCCGCCTCATTCTT
CTACTCATAAATTGACCCCCTCCTTGCCCATCCTTTCTCCCAATCAATGCGCAGAACCCGGCTCT
ATCGGCCGAGTACTCTCCCCTCGTCCTCCTCCCCCCCCCCCCCCT
Right flanking sequence: Indices 220350 -- 220849
ATGGGAGATAGGGGCCCCCTCTCTATGGCCCCCCGATGGGGGAGAGAGGGGGCCTATAGATATAG
GGGTGCCAACGCCGCCCTCTCCCCCATATGGAGTCTAGGGGCATATAGACATCTAGGGGTCCTTC
GTCGGACATACATGGATGCATCCATCTACCTCCTATTTATTCTATACGTGATACAACTGATGACT
GGTATCACGTATAGAATAGAAAAGGTGGATGGATGGCCCTATATCTATATAGGCCAACGGCCTAT
CTATATATGGGGCACCCCCCCCCCCTCCCTATAGATCTTATCTTATTGGGATTGGGCCCCCCCTC
ACCCTCCAGAGTTCAGATATGGGGCGGGCCCCTCCCCTCCCCTCTCTATAGATCAGATCTGGCAG
ATAGAGTGGGGCCCTCGCTGCCCCTATCTCTCTATAGAGTATAGATATGGCCCTATAGATCCCAT
ATAGAGTGCCGGGGGGGCGAGTGGTTCGCTGCGCTCACCCCTCAC
Found at i:220312 original size:20 final size:20
Alignment explanation
Indices: 220287--220346 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
220277 CCCCCCCCCT
220287 TCTATATAGATCTCTATATA
1 TCTATATAGATCTCTATATA
*
220307 TCTATATAGATCTATATATA
1 TCTATATAGATCTCTATATA
**
220327 TCTATATAGAGATCTATATA
1 TCTATATAGATCTCTATATA
220347 GATATGGGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (20 bp):
TCTATATAGATCTCTATATA
Left flanking sequence: Indices 219787 -- 220286
TATAGCGATGAACATCGGGATAATACTAGGGAATATGGTCCGAATAATCTCTATAGTCGTTCCGT
GAACAATCCTTTGCGGGATCGGATTTCTTCTATAGTGAAAATGCCATGAAGCGCGAACCAACATC
CGTGATACGAGAACCGAAATCAGAATTGGGAAGAAAAAGATATCATGATGTGAGTCAATGATTCC
TTGCATCACAGGTGTTGCCGCGTCTTGAGATCCCAATTGCCATGGTTCCGCAGCATCACAAGGAG
CGATTGTGAGGACCTTTAGGTACTCGGAGAGGAATAGCCAAATCATTTCCTTATTCCAAATCATT
TCCTTATTCCGCTGTTCTCTCCGATCTTTCGCTCCCGAAATCGAGAGACTCCCCGCCTCATTCTT
CTACTCATAAATTGACCCCCTCCTTGCCCATCCTTTCTCCCAATCAATGCGCAGAACCCGGCTCT
ATCGGCCGAGTACTCTCCCCTCGTCCTCCTCCCCCCCCCCCCCCT
Right flanking sequence: Indices 220347 -- 220846
GATATGGGAGATAGGGGCCCCCTCTCTATGGCCCCCCGATGGGGGAGAGAGGGGGCCTATAGATA
TAGGGGTGCCAACGCCGCCCTCTCCCCCATATGGAGTCTAGGGGCATATAGACATCTAGGGGTCC
TTCGTCGGACATACATGGATGCATCCATCTACCTCCTATTTATTCTATACGTGATACAACTGATG
ACTGGTATCACGTATAGAATAGAAAAGGTGGATGGATGGCCCTATATCTATATAGGCCAACGGCC
TATCTATATATGGGGCACCCCCCCCCCCTCCCTATAGATCTTATCTTATTGGGATTGGGCCCCCC
CTCACCCTCCAGAGTTCAGATATGGGGCGGGCCCCTCCCCTCCCCTCTCTATAGATCAGATCTGG
CAGATAGAGTGGGGCCCTCGCTGCCCCTATCTCTCTATAGAGTATAGATATGGCCCTATAGATCC
CATATAGAGTGCCGGGGGGGCGAGTGGTTCGCTGCGCTCACCCCT
Found at i:223605 original size:29 final size:31
Alignment explanation
Indices: 223546--223607 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
223536 GCCTCCCCGT
223546 CGGCCGAGTGCCCCCAGATATAGATAGAGGGG
1 CGGCCGAGTGCCCCCAGATATAGATA-AGGGG
*
223578 CGGCCGAGTG-CCCCATATATAGAT-AGGGG
1 CGGCCGAGTGCCCCCAGATATAGATAAGGGG
223607 C
1 C
223608 CCTCGACCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 6 0.21
31 13 0.45
32 10 0.34
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (31 bp):
CGGCCGAGTGCCCCCAGATATAGATAAGGGG
Left flanking sequence: Indices 223046 -- 223545
GGGGCTCGACCTCCCGAGGTCGAGCGCATAAATGACCCCGGGCCTCCCTATCCCGATAGGGGTCG
GCCGGGGGCGCCCCCCACCCCCACCTCAGATATCTTATAGTTCTAGATAGGGTGACCCCGGGCCT
CCCTATACTGATAGGGGTCGGTCCCCCCTATATAGATATTGGAGATATTGGGCCTCCCCCGTTAG
GGGGAGGTTCTTTAGATCTCCCCGGGGGAGGAGGGGGAGTACCCCATATCTATATATAGATAGGG
GGCCCGACTCTATCTCTATATAGAGCCGCCCCCTATATTAATAGGCCCCACCCCCATAGATATAT
AGGGGAGGCGGGCGCCTATATCCTATATAGATATAGGGGCGCATAAATGACCGTCGAGACCCTCC
CCCAGCTACCAGCTATATCCCCCATAGAGAGAGAGGGGGGTAGGCCCCTATCTAGAATTCTCTAT
ATGGAGGGCCTATCTACTAGATATAGTACCCCTTGGCCTCCCCGT
Right flanking sequence: Indices 223608 -- 224107
CCTCGACCCCATATCTATATAGGGGGTCGAGTGCTCTCCCGGGTTCTCGATCTGATATAGAAAGA
ATCGTTGGTTTCACCGGCGAACTACGTGGGCGGGGATCCTTATTATTAAGAATATGGGTCTTGAG
TCACCAACTGGAGAGGTTCTCATCCAGGTCATTCATGCGCGAACTAAATGCCCGCCTTCCGTGCC
TGACTATATATAGATAGCCGCCCCCCTCCTCTCATTCAGAATTCTAGATATGGCCGGCTCGACAG
CACTCGGCCGATAGGCCGAGGGCATTTCTCTCCCCCTCCCCCATATAGAGATAGGCGCCCACCTC
CCACCTCTAATAGAGTGAGTGAAGGAGTGAAGTTGGGGTTGGGGTCGAGGGCACTCGTCCGACGT
CAGGGCCTTTAGCCTTTAGGCACTCGTCCGATAGGACGAGGCCCGGCCCCCCCATATCTCTATAG
GGGCCCGCCCCTCTAGAGAGATATGGAGGGGGGAGGAGGACGACT
Found at i:225859 original size:88 final size:82
Alignment explanation
Indices: 225696--225900 Score: 324
Period size: 88 Copynumber: 2.5 Consensus size: 82
225686 GCCCTCCAGA
*
225696 GAGCCG-AGATATAATAGAGA-GGGGGCGGGTGAGTGCAGAAGATCGGGGCCCTCACCCTCCAGC
1 GAGCCGTAGATAGAATAGAGAGGGGGGCGGGTGAGTGCAGAAGATCGGGGCCCTCACCCTCCAGC
225759 CCTATAGAAAAATATGG
66 CCTATAGAAAAATATGG
*
225776 GAGCCGTAGATAGAATAGAGAGGGGGGCGGGTGAGTGCCCATAGAGAGATAGGGGGCCCTCACCC
1 GAGCCGTAGATAGAATAGAGAGGGGGGCGGGTGAGTG--C--AGA-AGAT-CGGGGCCCTCACCC
225841 TCCAGCCCTATAGAAAAATATGG
60 TCCAGCCCTATAGAAAAATATGG
225864 GAGCCGTAGATAGAATAGAGAGGGGGGCGGGTGAGTG
1 GAGCCGTAGATAGAATAGAGAGGGGGGCGGGTGAGTG
225901 GTTCGCTACG
Statistics
Matches: 115, Mismatches: 2, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
80 6 0.05
81 13 0.11
82 15 0.13
84 1 0.01
86 3 0.03
87 4 0.03
88 73 0.63
ACGTcount: A:0.29, C:0.19, G:0.38, T:0.15
Consensus pattern (82 bp):
GAGCCGTAGATAGAATAGAGAGGGGGGCGGGTGAGTGCAGAAGATCGGGGCCCTCACCCTCCAGC
CCTATAGAAAAATATGG
Left flanking sequence: Indices 225196 -- 225695
CAGTTGGGGCATCATTGATCTAGTTCTATTTCCCCTTCCTATATCCAGAACTCTCGTACGAGTAG
TGTGGTAATGGTGAAGATACTAAAAGGAGAGAAAGATACTACTGTAAAGAGACTACTAGGGAGAT
CTAGGGGGGGAGATATGGGGCTTCGGGTGGTCAGTTCTTTACCAACGGAAAGCATGGGGGAAGCG
CCCATAGATATAGATAGGCCGGTACTCTCCCCCATATAGAGATAGGGCTCCCCATCGGGCCCCAA
CCCAAATCTCTAGGTCTAGGGGGTGGCCGGGGTGCCCCATATATAGATAGGCCGTTGGCCTATAT
AGATTCTATATAGGGCCCCGATTCTATTCTCTATAGAGGGGGGGGGCACTCGCCATAGAAATCTA
TAGGGCCCCTTCTCCCCCTCACCCTTCACGGGTGAGATCCCCCCTCTCTCTATATTCAACCTCAC
CCTCGCCCCTATACCCTCAGATAGAGAGATTGGGGGCCCTCCAGA
Right flanking sequence: Indices 225901 -- 226400
GTTCGCTACGCGAACCACTCACCCGACGAAGGAGGGCGAGGTCTAAAGAGCCTCGCCCGGGGCGG
GCGAGTGCCCCCCCGGCCCCTCACCCTCCAGAGAGCCGAGAGATATAGAGTTCAGGGGGGGCGGG
CCCCGATCTGGCAGATAGAGTTGATTGGGGCCCTCTCTCTATATCTTATCTTATCTTATTTCTAT
GGCAATCGAGGGCCGGCTCGACCAACGGGTCCTCGACATATATCTAGTTGGGGGGGGGGTCGAGA
GATCAATGCCCTATCGGTCGATGCCCTCAAATTGTAAGTGATTGGTGTAATAATCGGTCATTCTT
TTTCCAACTCGTCCCAGAATGGGCGTTAGGGCAAAGAACAAGAAGAGAGCTACTGGAGGAATTTG
TCCAATAGTCACATATGGTGCCTCCACGGGTTCACATCCGATCCGACCTGATGGTAAGCAATCCG
CCAGGAAAAACCGAAAGAGTTTCTGGTAGATCGGGCGAAAACTTG
Found at i:227780 original size:7 final size:7
Alignment explanation
Indices: 227768--227804 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
227758 CGATAGAATA
227768 GATGGAT
1 GATGGAT
227775 GATGGAT
1 GATGGAT
*
227782 GATGGGT
1 GATGGAT
227789 GGATGGAT
1 -GATGGAT
227797 GATGGAT
1 GATGGAT
227804 G
1 G
227805 CATCCATGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
7 21 0.78
8 6 0.22
ACGTcount: A:0.24, C:0.00, G:0.49, T:0.27
Consensus pattern (7 bp):
GATGGAT
Left flanking sequence: Indices 227268 -- 227767
TCAGATTGCTCGGGGTCGGATGATCTATCAAATGCTGGTTCAGTGTGGAGAATATGGGTTGTTTG
AGAATGGAAAATCGTTGTGTCATGTCTCTGTCCCCTCAATTCGACTCCCCCTCAATGGAAAGGAA
CGGGTGCATTATCACCGAGCTTAAATTGGAGTACATCTCATTTATCCCCTGATCGGGCTTGTGTA
GGTAGATGTGGGGAATCGGCCGGCGACTCCCCGGCCATATAGAGAGAGATAGATAGAGAGAGAGA
TAGATCGTGTCTATCCCGGCTTGTGTAGGTAGCTGTGGGGAAGGAGATACGACACGATCTATCTC
TCTATGGCCGAGTCTAGTCCAGACTAGACTATAGTGATGCAGTCCGGACTATATACATACGTAAC
ATGAGTGGCCCGGCCATATTCTATAGAGAGAGGGGGGCCATGGATGCATCCATCTATCCGTTATA
TACGTGATACAACCAGTCATCAGTCGTATCACGGCCGATAGAATA
Right flanking sequence: Indices 227805 -- 228304
CATCCATGGCTCGACCCCCCTCTATACTCTCTATATGGCCCCCAGATACTCTATATTCTATGGGG
GGCCATATAGAGAGTATAGAGGGCCCTATAGATTCTATATGGCGACCCCTATCTATATATCTATA
TGGGGAGGCACCCGGCTCCCCCCCTCCAGAGTTCAGAATTCTAGATAGGCGCCCGCCCCAAAGAT
AGTTCAGAGATGGCCCCCCCCCACCCCCTCTTATCTTATCTTAACTGGTCGAGTGCCGAGAGGCC
GTTGGCCTATATAGCCCCTATATAGAGAGGCGGGCCCAGCCAGATAGATATATGGAGGAGCGCCG
GCCTCTAGTAGGCCCCCTCTCTAAATATGGCCTCTAGAGCGGAGTGCCTCCTCGATCTCTCGCCT
ATAGGGGGTGCCGACTATAGTATAGAGAGTTGCCCCCCCTATAGATCTATATAGATGGCTCGTTC
CCCAGCTCTCTCTAGTAGGCCAGATAGATCTATATAGGGGCCCTC
Found at i:229276 original size:6 final size:6
Alignment explanation
Indices: 229266--229378 Score: 61
Period size: 6 Copynumber: 19.0 Consensus size: 6
229256 TCAGATATAG
* * * * *
229266 ATCTCT CTCTCT ATCTCT ATCTCT ATCTGT ATCTCT CTCTAT ATCTCG
1 ATCTCT ATCTCT ATCTCT ATCTCT ATCTCT ATCTCT ATCTCT ATCTCT
*** * * **
229314 A-CGAG A-CTCT ATCT-T CAGTCTCT CTCTCT ATCTCT ATATAG ATCTCT
1 ATCTCT ATCTCT ATCTCT -A-TCTCT ATCTCT ATCTCT ATCTCT ATCTCT
* *
229361 CTCTCT ATCTGT ATCTCT
1 ATCTCT ATCTCT ATCTCT
229379 CTCAGATATA
Statistics
Matches: 77, Mismatches: 26, Indels: 8
0.69 0.23 0.07
Matches are distributed among these distances:
5 6 0.08
6 67 0.87
7 3 0.04
8 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.06, T:0.45
Consensus pattern (6 bp):
ATCTCT
Left flanking sequence: Indices 228766 -- 229265
CCTATGACGATATGGGTTCGCTATCGCTCACCCGGGCATCGCCCCTGCCCCTGTTTCTTAGTAGG
GGCATTCATCTGGGGAGGCCATATATCCATCGGCCCATATATCTATCTATCTATCTATCTGGGAG
GCGCCCATAGTTCTATAGAGGAGTCCCTCCCCCTCCCCATATCTAGATACCCAACCCCCTATATC
TATTCTCTAGAGGAGAGGCGGGGGGGTTCCACCTCTCTATTCTACCCCCTCGATTCAATTGAGAA
ATCAATCGACATATCATATATAGATAGGGGGCCCTCCCCCTCCCCATATATAGATAGAGCCCGAG
GGGGCCTATGCCTATTAATATAGGGGGGTAGGGGGGCCGATGCCCTCGACTAGTATAGAATAGAG
AGATGGGCCCATCTATCTGCCCATCTATATCTATCTGCGCGGGCGGGCGGCCTATCTGAACTCTG
AACTATGAATGAAACTCTCTCTATCTGTATCTCTCTCAGATATAG
Right flanking sequence: Indices 229379 -- 229878
CTCAGATATATATCTCTCGATCTATCTATATCTCTATATATCTGAACTCTATATCTATATCTATG
GGCGACCCCTAGAGTTCTCTATGATATGGCAACGGCCCTATCTAACTATGGGGACCCTCTAGATC
CCTATCTAAACAGAGGGGGGCAACGGCCCTATCTATAGAACTTAACTAACTCGTCGGGGGAGTGC
CTATCCAAAGTAGCCCCCCAGCTATGTATAGATCCTCCCGAGCAGAACTGGAACTGGTTAGTCGA
GTTGAATCCACACCGGAGTATCTCCCCAGAGTTCAGATAGGGGGAGCCGCTTTGGGTCAAGGCGC
TACCGAGTGAGAGAGAGCCGGCCGGGATACCGGGAGCCATATAGTGCAGATGTCTTCGACCGGGA
TGAGTTCTACTATACAGATAGAGTTCCGAAGGTCCGCTGCCGCTGAGTGAAGGCGCTCTATGTGC
TAGTGGTATCCCCGCTGAGTCCACGAACTACTGGGGAGAGAGTGG
Found at i:229301 original size:59 final size:59
Alignment explanation
Indices: 229238--229415 Score: 153
Period size: 65 Copynumber: 2.9 Consensus size: 59
229228 AATGAAACTC
*
229238 TCTCTATCTGTATCTCTCTCAGATATAGATCTCTCTCTCTATCTCTATCTCTATCTGTA
1 TCTCTATCTGTATCTCTCTCAGATATAGATCTCTCTCTCTATCTCTATCTCTATCTCTA
* * * * * **
229297 TCTCTCTCTATATCTCGAC-GAGACTCTATCTTCAG-TCTCTCTCTCTATCTCTATATAGATCTC
1 TCTCTATCTGTATCTC-TCTCAGA---TA---T-AGATCTCTCTCTCTATCTCTATCTCTATCTC
*
229360 TC
58 TA
* ** *
229362 TCTCTATCTGTATCTCTCTCAGATATATATCTCTCGATCTATCTATATCTCTAT
1 TCTCTATCTGTATCTCTCTCAGATATAGATCTCTCTCTCTATCTCTATCTCTAT
229416 ATATCTGAAC
Statistics
Matches: 89, Mismatches: 20, Indels: 20
0.69 0.16 0.16
Matches are distributed among these distances:
58 1 0.01
59 37 0.42
60 1 0.01
62 4 0.04
64 1 0.01
65 43 0.48
66 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.07, T:0.44
Consensus pattern (59 bp):
TCTCTATCTGTATCTCTCTCAGATATAGATCTCTCTCTCTATCTCTATCTCTATCTCTA
Left flanking sequence: Indices 228738 -- 229237
CTATAGAGATAGAGATCTGGGCGGTCCCCCTATGACGATATGGGTTCGCTATCGCTCACCCGGGC
ATCGCCCCTGCCCCTGTTTCTTAGTAGGGGCATTCATCTGGGGAGGCCATATATCCATCGGCCCA
TATATCTATCTATCTATCTATCTGGGAGGCGCCCATAGTTCTATAGAGGAGTCCCTCCCCCTCCC
CATATCTAGATACCCAACCCCCTATATCTATTCTCTAGAGGAGAGGCGGGGGGGTTCCACCTCTC
TATTCTACCCCCTCGATTCAATTGAGAAATCAATCGACATATCATATATAGATAGGGGGCCCTCC
CCCTCCCCATATATAGATAGAGCCCGAGGGGGCCTATGCCTATTAATATAGGGGGGTAGGGGGGC
CGATGCCCTCGACTAGTATAGAATAGAGAGATGGGCCCATCTATCTGCCCATCTATATCTATCTG
CGCGGGCGGGCGGCCTATCTGAACTCTGAACTATGAATGAAACTC
Right flanking sequence: Indices 229416 -- 229915
ATATCTGAACTCTATATCTATATCTATGGGCGACCCCTAGAGTTCTCTATGATATGGCAACGGCC
CTATCTAACTATGGGGACCCTCTAGATCCCTATCTAAACAGAGGGGGGCAACGGCCCTATCTATA
GAACTTAACTAACTCGTCGGGGGAGTGCCTATCCAAAGTAGCCCCCCAGCTATGTATAGATCCTC
CCGAGCAGAACTGGAACTGGTTAGTCGAGTTGAATCCACACCGGAGTATCTCCCCAGAGTTCAGA
TAGGGGGAGCCGCTTTGGGTCAAGGCGCTACCGAGTGAGAGAGAGCCGGCCGGGATACCGGGAGC
CATATAGTGCAGATGTCTTCGACCGGGATGAGTTCTACTATACAGATAGAGTTCCGAAGGTCCGC
TGCCGCTGAGTGAAGGCGCTCTATGTGCTAGTGGTATCCCCGCTGAGTCCACGAACTACTGGGGA
GAGAGTGGCATGTCCACTGGGTCCAGACGCCCTATAGATTATGTA
Found at i:230380 original size:15 final size:15
Alignment explanation
Indices: 230360--230389 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
230350 TAAGCCACAG
230360 ACCGATTGGGTGGTA
1 ACCGATTGGGTGGTA
230375 ACCGATTGGGTGGTA
1 ACCGATTGGGTGGTA
230390 GCCTAAGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.40, T:0.27
Consensus pattern (15 bp):
ACCGATTGGGTGGTA
Left flanking sequence: Indices 229860 -- 230359
ACTACTGGGGAGAGAGTGGCATGTCCACTGGGTCCAGACGCCCTATAGATTATGTAGTGGTGTCG
GCCGGTGACAGAACTGACTAGCAGTGGGACCTATTCCTACCTAACCCGGTCCCCTATCTAGTTCA
GAATATATGGACCCCTAGCGATAACGAGTTTGTTTATCGAGAATTGGTCTATGCCCCGACCTCAA
ACCTCAAGCCCATCCCATCTATTCTATAGCCTAGCCGACCGCCAGGGTTGAGTTGATGCCACCGG
TTCATCGGTGCATCTATATCTGAACTCTGCCCGACCGGGCACATTCTAAAGTGCCCCGACCGGCA
CATTCTAAAGCGAGGGGGTTCGTCAAGCGAGGGCTACTCCTGTTGAAGCCAAGGGGAGGGGGGGG
GGAGATAGGGGAGGGGCAAGAGTGGTCGGTTAGTCCCCCTCCCCTTGGCGGCCGGTTAATCCACA
GATGGTTCGGCGCTTTTCGAGGTCTTGATCGTAAGTAAGCCACAG
Right flanking sequence: Indices 230390 -- 230889
GCCTAAGCCACCATCGAGCTAGAACCCGCCCTTCTCTCTCTATCTGGAGGAGAGGTATAAAGATA
TAGGTCTAGGTCTTGAAATATAGGTATAGTCGATCTCACCTCACCCGCCGCCGCTCACTGAACTC
TATATAGCCGCCCCCGACCCATACTGAAGGCCTATAGTTCTATCTGGGGCGGCTAGAGTTCCACC
CCCCTATCTATCTCTCTATCTATCTATATGGGCGCCCCAGGCCTGCCTATATCTCTCTCTATCTG
GTTCGAGATAGGATTACAGCAGGAGTTAGCAGCAGGAGTTCGCAGCACGAGTTAGCAGCAGGAGT
TAGCAGCACGAGTTAGCAGCAGGAGTTAGCAGAGCAGAGCAGCTCTATCTGGTTCGAGATAGCAG
CTGGAGTTAGCAGCAGCCCGACTCTCTCATCTCATCTCTAATCTCTATGGCCAGGCCAGCTACGA
ATCCATCCATCCATCCATCCAGCTACAAATCCATCCCTTATAGTT
Found at i:230684 original size:13 final size:13
Alignment explanation
Indices: 230666--230746 Score: 135
Period size: 13 Copynumber: 6.2 Consensus size: 13
230656 GATAGGATTA
230666 CAGCAGGAGTTAG
1 CAGCAGGAGTTAG
*
230679 CAGCAGGAGTTCG
1 CAGCAGGAGTTAG
*
230692 CAGCACGAGTTAG
1 CAGCAGGAGTTAG
230705 CAGCAGGAGTTAG
1 CAGCAGGAGTTAG
*
230718 CAGCACGAGTTAG
1 CAGCAGGAGTTAG
230731 CAGCAGGAGTTAG
1 CAGCAGGAGTTAG
230744 CAG
1 CAG
230747 AGCAGAGCAG
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 62 1.00
ACGTcount: A:0.30, C:0.20, G:0.36, T:0.15
Consensus pattern (13 bp):
CAGCAGGAGTTAG
Left flanking sequence: Indices 230166 -- 230665
TAAAGTGCCCCGACCGGCACATTCTAAAGCGAGGGGGTTCGTCAAGCGAGGGCTACTCCTGTTGA
AGCCAAGGGGAGGGGGGGGGGAGATAGGGGAGGGGCAAGAGTGGTCGGTTAGTCCCCCTCCCCTT
GGCGGCCGGTTAATCCACAGATGGTTCGGCGCTTTTCGAGGTCTTGATCGTAAGTAAGCCACAGA
CCGATTGGGTGGTAACCGATTGGGTGGTAGCCTAAGCCACCATCGAGCTAGAACCCGCCCTTCTC
TCTCTATCTGGAGGAGAGGTATAAAGATATAGGTCTAGGTCTTGAAATATAGGTATAGTCGATCT
CACCTCACCCGCCGCCGCTCACTGAACTCTATATAGCCGCCCCCGACCCATACTGAAGGCCTATA
GTTCTATCTGGGGCGGCTAGAGTTCCACCCCCCTATCTATCTCTCTATCTATCTATATGGGCGCC
CCAGGCCTGCCTATATCTCTCTCTATCTGGTTCGAGATAGGATTA
Right flanking sequence: Indices 230747 -- 231246
AGCAGAGCAGCTCTATCTGGTTCGAGATAGCAGCTGGAGTTAGCAGCAGCCCGACTCTCTCATCT
CATCTCTAATCTCTATGGCCAGGCCAGCTACGAATCCATCCATCCATCCATCCAGCTACAAATCC
ATCCCTTATAGTTCTGTAATATATCTGGGGGCTAGGGCTAGCTACTAATCTCTACTCGGAGAGGG
TATGGCCATATCTCTAATCTATATATAGGGGGGCGGGGGCCATATCCCATATCTCTCTATAGGAT
AGGGCTGCATCAGATCTCTGGGCATTGGCCATATCTTATCTCTCTCTCTATAGGATAGGGAGGCT
CGCCTATAGAGAAGAGACTAGGGGGAGAGCGGAGCCGTGCATTGATCTATATATGGAGAGGCGGT
GCCATATCTCGTCTCGATACGGGATATTGGCTTGGGTTTGCATGCTGAGCAATATCTCTTCTCTC
TGTCGAGAAGTTTGCTGTGCAGTGCTGAGCCCTATCTATATATGG
Found at i:231641 original size:60 final size:61
Alignment explanation
Indices: 231574--231690 Score: 209
Period size: 60 Copynumber: 1.9 Consensus size: 61
231564 CCCCCCCATA
*
231574 TCTAGACTCTCTAGACTCTAGGGAGTACCATATC-TATCTCTCTATAGGGGCCATCGATAT
1 TCTAGACTCTCTAGACTCTAGGGAGTACCATATCATATCTATCTATAGGGGCCATCGATAT
231634 TCTAGACTCTCTAGACTCTAGGGAGTACCATATCTATATCTATCTATAGGGGCCATC
1 TCTAGACTCTCTAGACTCTAGGGAGTACCATATC-ATATCTATCTATAGGGGCCATC
231691 TCTAGAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
60 34 0.63
62 20 0.37
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (61 bp):
TCTAGACTCTCTAGACTCTAGGGAGTACCATATCATATCTATCTATAGGGGCCATCGATAT
Left flanking sequence: Indices 231074 -- 231573
CCTATAGAGAAGAGACTAGGGGGAGAGCGGAGCCGTGCATTGATCTATATATGGAGAGGCGGTGC
CATATCTCGTCTCGATACGGGATATTGGCTTGGGTTTGCATGCTGAGCAATATCTCTTCTCTCTG
TCGAGAAGTTTGCTGTGCAGTGCTGAGCCCTATCTATATATGGTCTCTCTGGGGATCGAGATGAA
CCAGACTAGACTAGTGATCGAGACGTCTCGATAAGGGCTCTCCCCACCTGACCCAAGGGGAGCAA
CCAGCAACCGGGATAGGGCAGGGCCATGCCAGGTAGATCTCTCTCTATCTATCTCTCTATGGCCA
TGCCATGCTAGATACAGTAGAGGGAGGAGTGGGCATCTCTAATCCATCTCTCTACTCTATAGGGC
CGAGCATTAATCTAATCTAATCTGGCCATATCTTATCTCTCTGCCGCTATCTTATCTAATCTATA
GGGCCATATCCCATATATAGATATAGGAGTGGGCTCCCCCCCATA
Right flanking sequence: Indices 231691 -- 232190
TCTAGAATCGGCCAGATCGGGCCATCTCATCTATCTACGTGATATCACTACTTCGTATATAGATT
AGTAGAGATCTCTCCATATCTATAGATCTCTCTATCTCTCTATCTAGATCTATATGGGAGGATAG
CCTAATAGAATAGACTAGGGGGAGCCGTGCATTGATACGGGAGTATGCCTTGGGTGCCTATCTAT
CCGAAGGGGTTCATCCAGCCATTCGCCTATATATATATTCTATGGGGGGTTCATCCGGCTTGGGT
GTAGCCGCCTATCTATATATGGGGGATAGGGCCATGCTCAGTAGAGGAGAGGGCATATCTATCTC
CCATCTCTCTATCTAGGGCCATGCTCAGTAGAGTAGAGCCCGGCCAACACTTGCCAGATAGATAT
AGAGGGCCTATATAAGAGAGATACGCCCATATCTAGATCTATATTCTAGACGGAGCAGAGCCAGT
GGGCGTCATCGAGACTGTGCTGAGCAATATTAGCAACCGGGTTCG
Found at i:232587 original size:18 final size:18
Alignment explanation
Indices: 232564--232598 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
232554 GGGAGCCGTG
232564 CATATCTATAGATAGGGC
1 CATATCTATAGATAGGGC
*
232582 CATATCTATATATAGGG
1 CATATCTATAGATAGGG
232599 TAGGGCCAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31
Consensus pattern (18 bp):
CATATCTATAGATAGGGC
Left flanking sequence: Indices 232064 -- 232563
ACTTGCCAGATAGATATAGAGGGCCTATATAAGAGAGATACGCCCATATCTAGATCTATATTCTA
GACGGAGCAGAGCCAGTGGGCGTCATCGAGACTGTGCTGAGCAATATTAGCAACCGGGTTCGGTT
CCCATATCTCTATATAGGGGGCCATAGGCCTATCTAGATTCTATTCTATATGGGGGGTTCATCTG
ATATCGCTTGGGGTTGCTGCCTATCTATATAGATATTGATACGGTTCAGTTGATACGGGAGTATG
GCTTGGGTGCCATATCTCTCCATATCTCTATATAGGGGGGGACTAGTGGACGATCTAGAATATAG
TAGTGGCTTGGGTGCCGTGCCATATCTATCCATATCTCTATATAGGGGGGGACTAGTGATCTAAT
CTTAATCTCGCTTGGGTCTTCTCCCCTCTAGTGACTATAGATGGAGACGTCTCGATAAGATTAAG
ATGAAGGGGCTCCCCACCTGACCCAAGGGGGAGAGGGGAGCCGTG
Right flanking sequence: Indices 232599 -- 233098
TAGGGCCAGATCTAATCTCTATATAGGGCTAGGCTAGGCTAGCCTGGGTGCCATATCTCTCTAAA
CTACTAGACTAGTGATCTAATGTATCTAGAGACTAGTGATATAGCTTGGGTCTTCTCCCCTCTAG
TGACTGGTGATCGAGACGAACAAGAACAAGATGAAGGGCCCCCCCTATCTATATATATATAGATA
TATATCTATATATATGGATAGTTTTTTGGCCCACCTGACCCAAGGGGGAGAGCGGAGCCCCCATA
TCTATATATACGCTTGGGGTTGCTGCCTATCCCTATCTATCCGAAGGAATGGGGATGGGGGGGGG
GTTCATCTGCCTTTGGTTTGCTGTTCAGGGATAGGGCCATGCTCAGTAGAGGAGAGGAGTGGGCA
TATCTATCTCCCATCTCTCTATCTATAGGGGTCTCCCAATCACCAAGCAGCTATATATAGAGGGG
AGGGGAGGGGAGGGGAGGGGAGGGGGCCAGATATAGATTCTCTAT
Found at i:233058 original size:5 final size:5
Alignment explanation
Indices: 233048--233078 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
233038 GCTATATATA
233048 GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG G
1 GAGGG GAGGG GAGGG GAGGG GAGGG GAGGG G
233079 GCCAGATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (5 bp):
GAGGG
Left flanking sequence: Indices 232548 -- 233047
GGAGAGGGGAGCCGTGCATATCTATAGATAGGGCCATATCTATATATAGGGTAGGGCCAGATCTA
ATCTCTATATAGGGCTAGGCTAGGCTAGCCTGGGTGCCATATCTCTCTAAACTACTAGACTAGTG
ATCTAATGTATCTAGAGACTAGTGATATAGCTTGGGTCTTCTCCCCTCTAGTGACTGGTGATCGA
GACGAACAAGAACAAGATGAAGGGCCCCCCCTATCTATATATATATAGATATATATCTATATATA
TGGATAGTTTTTTGGCCCACCTGACCCAAGGGGGAGAGCGGAGCCCCCATATCTATATATACGCT
TGGGGTTGCTGCCTATCCCTATCTATCCGAAGGAATGGGGATGGGGGGGGGGTTCATCTGCCTTT
GGTTTGCTGTTCAGGGATAGGGCCATGCTCAGTAGAGGAGAGGAGTGGGCATATCTATCTCCCAT
CTCTCTATCTATAGGGGTCTCCCAATCACCAAGCAGCTATATATA
Right flanking sequence: Indices 233079 -- 233578
GCCAGATATAGATTCTCTATCTTTGGTGAATCGCTATATATGGAGTAGGGCGAGTATACCATATA
GAGAGGGGGTCGAGTCATAGCTATATATAGAGGGGGCCAGATATAGATTCTCTATCTTGGGTGAA
TCGCTATATATGGAGTAGGGCGCTGTTTCAATCACACGAGTTGCCGGCCCTATCTATATAGATAT
ATCTATATATATATAGATATATCACGACCACACGGAGCATATTCCGGTTGCGAGATATATAGATA
GGGCAGATAAGATATATAGGGCATGGTCATAATCTATATATGTTGCCGGTTGATCATGTTACGAT
CACACGAGTTGCCGCGTTCATGGTTGTTGTTGCTAGTTATGGCATGGCGCCCTATCCATATATGG
GATATTACATATGTAATATGATTCTCGGAAGATCTATATAGAGGGCAGGGCGCCCCTCTCGATCG
AAGAGTGGCATTTCTTTCATATTAAGTCAGTAGAGGAGTTCCGTC
Found at i:233157 original size:25 final size:27
Alignment explanation
Indices: 233129--233179 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
233119 TGGAGTAGGG
233129 CGAGT-ATA-CCATATAGAGAGGGGGT
1 CGAGTCATAGCCATATAGAGAGGGGGT
* *
233154 CGAGTCATAGCTATATATAGAGGGGG
1 CGAGTCATAGCCATATAGAGAGGGGG
233180 CCAGATATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 3 0.14
27 14 0.64
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.22
Consensus pattern (27 bp):
CGAGTCATAGCCATATAGAGAGGGGGT
Left flanking sequence: Indices 232629 -- 233128
AGGCTAGGCTAGCCTGGGTGCCATATCTCTCTAAACTACTAGACTAGTGATCTAATGTATCTAGA
GACTAGTGATATAGCTTGGGTCTTCTCCCCTCTAGTGACTGGTGATCGAGACGAACAAGAACAAG
ATGAAGGGCCCCCCCTATCTATATATATATAGATATATATCTATATATATGGATAGTTTTTTGGC
CCACCTGACCCAAGGGGGAGAGCGGAGCCCCCATATCTATATATACGCTTGGGGTTGCTGCCTAT
CCCTATCTATCCGAAGGAATGGGGATGGGGGGGGGGTTCATCTGCCTTTGGTTTGCTGTTCAGGG
ATAGGGCCATGCTCAGTAGAGGAGAGGAGTGGGCATATCTATCTCCCATCTCTCTATCTATAGGG
GTCTCCCAATCACCAAGCAGCTATATATAGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGCCAG
ATATAGATTCTCTATCTTTGGTGAATCGCTATATATGGAGTAGGG
Right flanking sequence: Indices 233180 -- 233679
CCAGATATAGATTCTCTATCTTGGGTGAATCGCTATATATGGAGTAGGGCGCTGTTTCAATCACA
CGAGTTGCCGGCCCTATCTATATAGATATATCTATATATATATAGATATATCACGACCACACGGA
GCATATTCCGGTTGCGAGATATATAGATAGGGCAGATAAGATATATAGGGCATGGTCATAATCTA
TATATGTTGCCGGTTGATCATGTTACGATCACACGAGTTGCCGCGTTCATGGTTGTTGTTGCTAG
TTATGGCATGGCGCCCTATCCATATATGGGATATTACATATGTAATATGATTCTCGGAAGATCTA
TATAGAGGGCAGGGCGCCCCTCTCGATCGAAGAGTGGCATTTCTTTCATATTAAGTCAGTAGAGG
AGTTCCGTCGAGGAGGAGGCATTTCATGGCATGGCGCCCTATCCATATATGGGAGTACTATATAA
TAGAATATAATAGAATATAATAGAATATAATAGAATATAATAGAA
Found at i:233278 original size:14 final size:14
Alignment explanation
Indices: 233259--233288 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
233249 TTGCCGGCCC
233259 TATCTATATAGATA
1 TATCTATATAGATA
*
233273 TATCTATATATATA
1 TATCTATATAGATA
233287 TA
1 TA
233289 GATATATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (14 bp):
TATCTATATAGATA
Left flanking sequence: Indices 232759 -- 233258
ATGAAGGGCCCCCCCTATCTATATATATATAGATATATATCTATATATATGGATAGTTTTTTGGC
CCACCTGACCCAAGGGGGAGAGCGGAGCCCCCATATCTATATATACGCTTGGGGTTGCTGCCTAT
CCCTATCTATCCGAAGGAATGGGGATGGGGGGGGGGTTCATCTGCCTTTGGTTTGCTGTTCAGGG
ATAGGGCCATGCTCAGTAGAGGAGAGGAGTGGGCATATCTATCTCCCATCTCTCTATCTATAGGG
GTCTCCCAATCACCAAGCAGCTATATATAGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGGCCAG
ATATAGATTCTCTATCTTTGGTGAATCGCTATATATGGAGTAGGGCGAGTATACCATATAGAGAG
GGGGTCGAGTCATAGCTATATATAGAGGGGGCCAGATATAGATTCTCTATCTTGGGTGAATCGCT
ATATATGGAGTAGGGCGCTGTTTCAATCACACGAGTTGCCGGCCC
Right flanking sequence: Indices 233289 -- 233788
GATATATCACGACCACACGGAGCATATTCCGGTTGCGAGATATATAGATAGGGCAGATAAGATAT
ATAGGGCATGGTCATAATCTATATATGTTGCCGGTTGATCATGTTACGATCACACGAGTTGCCGC
GTTCATGGTTGTTGTTGCTAGTTATGGCATGGCGCCCTATCCATATATGGGATATTACATATGTA
ATATGATTCTCGGAAGATCTATATAGAGGGCAGGGCGCCCCTCTCGATCGAAGAGTGGCATTTCT
TTCATATTAAGTCAGTAGAGGAGTTCCGTCGAGGAGGAGGCATTTCATGGCATGGCGCCCTATCC
ATATATGGGAGTACTATATAATAGAATATAATAGAATATAATAGAATATAATAGAATATAATAGA
ATATAATAGAATATAATATCTCGTTATTGGGCCCCCACCCCCCCCCCCCCCCCACCTATATATCT
TATCTTGTGAATTAAACTAGTTCAATCGGCACTCGCTTTCTCTCT
Found at i:233644 original size:10 final size:10
Alignment explanation
Indices: 233629--233696 Score: 136
Period size: 10 Copynumber: 6.8 Consensus size: 10
233619 TGGGAGTACT
233629 ATATAATAGA
1 ATATAATAGA
233639 ATATAATAGA
1 ATATAATAGA
233649 ATATAATAGA
1 ATATAATAGA
233659 ATATAATAGA
1 ATATAATAGA
233669 ATATAATAGA
1 ATATAATAGA
233679 ATATAATAGA
1 ATATAATAGA
233689 ATATAATA
1 ATATAATA
233697 TCTCGTTATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 58 1.00
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (10 bp):
ATATAATAGA
Left flanking sequence: Indices 233129 -- 233628
CGAGTATACCATATAGAGAGGGGGTCGAGTCATAGCTATATATAGAGGGGGCCAGATATAGATTC
TCTATCTTGGGTGAATCGCTATATATGGAGTAGGGCGCTGTTTCAATCACACGAGTTGCCGGCCC
TATCTATATAGATATATCTATATATATATAGATATATCACGACCACACGGAGCATATTCCGGTTG
CGAGATATATAGATAGGGCAGATAAGATATATAGGGCATGGTCATAATCTATATATGTTGCCGGT
TGATCATGTTACGATCACACGAGTTGCCGCGTTCATGGTTGTTGTTGCTAGTTATGGCATGGCGC
CCTATCCATATATGGGATATTACATATGTAATATGATTCTCGGAAGATCTATATAGAGGGCAGGG
CGCCCCTCTCGATCGAAGAGTGGCATTTCTTTCATATTAAGTCAGTAGAGGAGTTCCGTCGAGGA
GGAGGCATTTCATGGCATGGCGCCCTATCCATATATGGGAGTACT
Right flanking sequence: Indices 233697 -- 234196
TCTCGTTATTGGGCCCCCACCCCCCCCCCCCCCCCACCTATATATCTTATCTTGTGAATTAAACT
AGTTCAATCGGCACTCGCTTTCTCTCTTTACCTTTGTCTAGTTTCCTAGTTCGCTCCGTCCAATG
GCCAATGGCTGGCCAATAGGGTTGGGTTAGTCATTTACAGATCGCAAGTCGATTAAGTAGAGATA
GGGGCGCTGCTGAAGCGTATACATAGATATGGGCGCCATCGCCATATATAGATAGGCTAGGGGAC
CCTCCAGGCTAGGCCTCCAGCATCAGCCCATGTGCCCACAGCCACTTATATGAGATAAGAAGGGG
ATGGGATAAGTTCGGAGTGCTGGGCCAACTATCTGAGTCTATAGTATGTAGTATAGAGTATATAG
TCTAGATATAGGGGCTATAGAGTCTATAGTAGAGAGAGGGATATAGGGGTGGCTTAGACTCTAAA
TGAATGAATGCCCTATATTCTCTTCTATCTATATAGAGGCCCCCA
Found at i:235821 original size:18 final size:18
Alignment explanation
Indices: 235798--235833 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
235788 AGTCGTAGGG
235798 CGTAGCTTCGATGGATCA
1 CGTAGCTTCGATGGATCA
235816 CGTAGCTTCGATGGATCA
1 CGTAGCTTCGATGGATCA
235834 TTCCCCTCGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (18 bp):
CGTAGCTTCGATGGATCA
Left flanking sequence: Indices 235298 -- 235797
TCTATAGAGTCTAGCCGGCTCGATAGACGTAGAGACGGATGGATCCCGGGGGATCCCCCCTCTCC
CTCTAATATGGAATGGAAGGTGGAGGGTGCAGCGGGTTAGCTCCGATCCGCTGATGCGAGAGCCC
GGCCGCTGGAGAAGAGAGCCCTATAGTTCTATCTGGCCGCTGATCGGCTCTCGGCCCCTCTGGCC
GCCCCTCTGTATATAGGCCGGCTGATAGGGGGAGATCGGATTGTCCATCCCTGTCCAGATCCAGA
GCCTATAGAGAGTTCTACCCAATCCCCACAGTCTAGAGTTTCATTGGCCCGGGATTAACGGAGAT
CATCTCATCACTCTCGAGATCCGGCCGTCGGGAGACTCGACTAGAGAGTGGAGGTTGGTTGGTTC
CAGCCCTATCTATAGATCTTTCGTTGCAATATCTAACTATATGGTCATTCAGTTCGATGGGAAAG
AAATGACCAGACCATACCTACTGGCCACTATCTATAGTCGTAGGG
Right flanking sequence: Indices 235834 -- 236333
TTCCCCTCGCCCTCCCCCTCCCCGTGGCCCCCTATCTATATCCACGGGGCCTGGGCCCTATCTAT
ATCCACGGGGCCTGGTGTGGCCCCTAGATATCAATTGGTATAGTTGGATGGGGTGGGGGGCCAAC
TAGAACTATACGAGAGATCTCGTACTGTCTATCGTATTCCGAGGTGAGGAGCCCTGAATGAGAGG
GGGGGCACATTCCTTTATGCTATGCCCATCCCATAGTGTGATAGGGATAGGGGGCCGGCGGCCTA
CGAGTCTATGCCGGTTTCCGGACAGCTGTACTAACTAGGGGTGGGGAGGCATGCATATCTATGGG
GAGAATTCTCTACAGCTATATAGATTCTATATAGGCGGGGGGGGGAGGCCGACGAAGCTATATAG
AGTAGGGTAGGGGCCTATCTAATCCCATAGTGTGATAGGGCCCTCCGTGTAGCCAACCCAATAGA
GAGGGCCCCGTATAGAGATAGGGCCGACGGCCTACTCTATAGAAC
Found at i:235897 original size:26 final size:26
Alignment explanation
Indices: 235863--235913 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
235853 CCCCGTGGCC
235863 CCCTATCTATATCCACGGGGCCTGGG
1 CCCTATCTATATCCACGGGGCCTGGG
235889 CCCTATCTATATCCACGGGGCCTGG
1 CCCTATCTATATCCACGGGGCCTGG
235914 TGTGGCCCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.25, T:0.24
Consensus pattern (26 bp):
CCCTATCTATATCCACGGGGCCTGGG
Left flanking sequence: Indices 235363 -- 235862
CTCTAATATGGAATGGAAGGTGGAGGGTGCAGCGGGTTAGCTCCGATCCGCTGATGCGAGAGCCC
GGCCGCTGGAGAAGAGAGCCCTATAGTTCTATCTGGCCGCTGATCGGCTCTCGGCCCCTCTGGCC
GCCCCTCTGTATATAGGCCGGCTGATAGGGGGAGATCGGATTGTCCATCCCTGTCCAGATCCAGA
GCCTATAGAGAGTTCTACCCAATCCCCACAGTCTAGAGTTTCATTGGCCCGGGATTAACGGAGAT
CATCTCATCACTCTCGAGATCCGGCCGTCGGGAGACTCGACTAGAGAGTGGAGGTTGGTTGGTTC
CAGCCCTATCTATAGATCTTTCGTTGCAATATCTAACTATATGGTCATTCAGTTCGATGGGAAAG
AAATGACCAGACCATACCTACTGGCCACTATCTATAGTCGTAGGGCGTAGCTTCGATGGATCACG
TAGCTTCGATGGATCATTCCCCTCGCCCTCCCCCTCCCCGTGGCC
Right flanking sequence: Indices 235914 -- 236413
TGTGGCCCCTAGATATCAATTGGTATAGTTGGATGGGGTGGGGGGCCAACTAGAACTATACGAGA
GATCTCGTACTGTCTATCGTATTCCGAGGTGAGGAGCCCTGAATGAGAGGGGGGGCACATTCCTT
TATGCTATGCCCATCCCATAGTGTGATAGGGATAGGGGGCCGGCGGCCTACGAGTCTATGCCGGT
TTCCGGACAGCTGTACTAACTAGGGGTGGGGAGGCATGCATATCTATGGGGAGAATTCTCTACAG
CTATATAGATTCTATATAGGCGGGGGGGGGAGGCCGACGAAGCTATATAGAGTAGGGTAGGGGCC
TATCTAATCCCATAGTGTGATAGGGCCCTCCGTGTAGCCAACCCAATAGAGAGGGCCCCGTATAG
AGATAGGGCCGACGGCCTACTCTATAGAACTGGGGACGAGGACCCCTATCACTATATGGAAGCTA
TGGCCCTCGGTCTATCAATCGAGTGCCGACTATAGACTATAGATA
Found at i:236795 original size:8 final size:8
Alignment explanation
Indices: 236782--236812 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
236772 CGACCAACGG
236782 CCCTATCT
1 CCCTATCT
236790 CCCTATCT
1 CCCTATCT
*
236798 CTCTATCT
1 CCCTATCT
236806 CCCTATC
1 CCCTATC
236813 GAGGATTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.13, C:0.48, G:0.00, T:0.39
Consensus pattern (8 bp):
CCCTATCT
Left flanking sequence: Indices 236282 -- 236781
CAATAGAGAGGGCCCCGTATAGAGATAGGGCCGACGGCCTACTCTATAGAACTGGGGACGAGGAC
CCCTATCACTATATGGAAGCTATGGCCCTCGGTCTATCAATCGAGTGCCGACTATAGACTATAGA
TAGTCGCCCTCGCCCCCTCTAACTAACTATGGCAGGGCTCCCCCTCCAGCTCCAGTGTTGATCAG
ATCAGATCTATTATTCGCTTCGCTACGAGAACTATAGATGGGGGCGGGCGCCAAGAAACTGAACT
ATACGGGGCCGGTTCTCCGCCCACAGGGGCCCCATAGTGTGATAGGGGGCCCTGACTAGTACTAT
AGAGAGGAAATTAAGAAATAAATCTCAGATCTATTTATTTCTATTTACTCGGGTGCCAATGAAAC
TCTATCTCTATCTATATATAGGCTTTCCTATCTGGATCTGGTATATCCGGATCTGGTCGCCCCTA
TATCCCTATCTAAACAGAGGGGGGCCAACGGGACTCGACCAACGG
Right flanking sequence: Indices 236813 -- 237312
GAGGATTCTAGATTATCTTGATCCGGGACGATATTCAACTAGATTTGATCGGAGGGACGGCCAAC
TATCTAGAACTAACTGCCACTCGACTGCCCAGATCTAACTAGAGGAAGTCGAGGTAGAGTAGAGG
GTGCCGACGGGACTCGGGTGCCAACTATAGTGATGCAGTCCATACCATATACGAACCAATCTGCG
TTGACTACAGACGGAGCGCTCCCGCCCCCTAGTGTTCTGTTTTCAGTCTGCTGTGGGCCTATATC
TATAAGGCGAGGCCTTGGGTAGCTAGCTGCATTAGCTACAGACGGCCCTATCCTATCTATATAGT
AATGTGTTGCCGAACTATAGAGAGGGGGCGGTGAGCTCCGTAACCAATCTAGGCTGCGTTTCCCA
TAGGTTGAGATCTGGGCGGTCCCCCTATCTAGACTCCCCTATCTATAGTTCGGGGGGTGGGGGGC
ACTCGGGTCCCGACTAAGACTATAGTGATATGATGCCCCAGATGT
Found at i:237637 original size:46 final size:46
Alignment explanation
Indices: 237570--237670 Score: 193
Period size: 46 Copynumber: 2.2 Consensus size: 46
237560 GCATTCTATT
237570 CTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGCATC
1 CTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGCATC
*
237616 CTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGCATT
1 CTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGCATC
237662 CTATTCCAA
1 CTATTCCAA
237671 CCATTCTAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.23, C:0.42, G:0.08, T:0.28
Consensus pattern (46 bp):
CTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGCATC
Left flanking sequence: Indices 237070 -- 237569
ATCTATAAGGCGAGGCCTTGGGTAGCTAGCTGCATTAGCTACAGACGGCCCTATCCTATCTATAT
AGTAATGTGTTGCCGAACTATAGAGAGGGGGCGGTGAGCTCCGTAACCAATCTAGGCTGCGTTTC
CCATAGGTTGAGATCTGGGCGGTCCCCCTATCTAGACTCCCCTATCTATAGTTCGGGGGGTGGGG
GGCACTCGGGTCCCGACTAAGACTATAGTGATATGATGCCCCAGATGTAGATATGGATATATAGA
GATAGGGGGCCACGTAAGGGCATTTGGATAGGGCCAACCCGACCCAACCCCCTATCTCTATATGG
GAGGTTGGGGGCGGCCTCGGCACTCAATATCTATCTGCCCATCTATTCTCTAGAGGCGGGCGGGG
GAGCGGGAGCATAGCATAAATAGCCCTCTCACTTATAGGTCTTCAACCTTCTGGGAGTGCCGAGC
CGCCCTCTCCCATATAGAGATAGGGGGTTGGTTCAGCATTCTATT
Right flanking sequence: Indices 237671 -- 238170
CCATTCTAAACTATCCACCATTCTATTCTATTCCAAGCCAACCTGGGAGATGGGACCCTATACCC
CTATACTCTCCGGCCGAGATGGGTGGAACGACAGTACAGCTTGGAGTGATTGATTCAACCTTACA
GCTCAGCATTCATGTCCGGAGTGATTGATTCAACAGCTCAGCTTGGAGTGGAGTGATTCATGTCC
CAACCCAACCTTACAGCTCAGAGTGAGTGATTCATGTCTTCTGATGGTCACTATTCTATCTGCTG
TCCCGTAATCGTGGTGGGTCGGTACTATACTCTACTATACTACTCCTCGACATTTCTCTGTGCTG
TGAGAAGCACGTTATTAGGTATCTGTCACACGCCATATCTAGAGTTCAGGGGTTATATGGGGATG
GGGGATGGGGGCCCTATCCCCTATCTATATCTATCTGGGGGGGTTGAATCCATTCTATACGTGAT
ACGACTGATGTGATGCCCTCTCTATATATCTTAGTACATATCGGT
Found at i:237701 original size:17 final size:18
Alignment explanation
Indices: 237659--237706 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
237649 CTATCTCTGC
237659 ATTCTATTCCAACCATTCT
1 ATTCTA-TCCAACCATTCT
**
237678 AAACTATCC-ACCATTCT
1 ATTCTATCCAACCATTCT
237695 ATTCTATTCCAA
1 ATTCTA-TCCAA
237707 GCCAACCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
17 12 0.52
18 6 0.26
19 5 0.22
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTCTATCCAACCATTCT
Left flanking sequence: Indices 237159 -- 237658
GAGGGGGCGGTGAGCTCCGTAACCAATCTAGGCTGCGTTTCCCATAGGTTGAGATCTGGGCGGTC
CCCCTATCTAGACTCCCCTATCTATAGTTCGGGGGGTGGGGGGCACTCGGGTCCCGACTAAGACT
ATAGTGATATGATGCCCCAGATGTAGATATGGATATATAGAGATAGGGGGCCACGTAAGGGCATT
TGGATAGGGCCAACCCGACCCAACCCCCTATCTCTATATGGGAGGTTGGGGGCGGCCTCGGCACT
CAATATCTATCTGCCCATCTATTCTCTAGAGGCGGGCGGGGGAGCGGGAGCATAGCATAAATAGC
CCTCTCACTTATAGGTCTTCAACCTTCTGGGAGTGCCGAGCCGCCCTCTCCCATATAGAGATAGG
GGGTTGGTTCAGCATTCTATTCTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGCA
TCCTATTCCAAGCCAACCGAGCCCCATCTATCTCCCTATCTCTGC
Right flanking sequence: Indices 237707 -- 238206
GCCAACCTGGGAGATGGGACCCTATACCCCTATACTCTCCGGCCGAGATGGGTGGAACGACAGTA
CAGCTTGGAGTGATTGATTCAACCTTACAGCTCAGCATTCATGTCCGGAGTGATTGATTCAACAG
CTCAGCTTGGAGTGGAGTGATTCATGTCCCAACCCAACCTTACAGCTCAGAGTGAGTGATTCATG
TCTTCTGATGGTCACTATTCTATCTGCTGTCCCGTAATCGTGGTGGGTCGGTACTATACTCTACT
ATACTACTCCTCGACATTTCTCTGTGCTGTGAGAAGCACGTTATTAGGTATCTGTCACACGCCAT
ATCTAGAGTTCAGGGGTTATATGGGGATGGGGGATGGGGGCCCTATCCCCTATCTATATCTATCT
GGGGGGGTTGAATCCATTCTATACGTGATACGACTGATGTGATGCCCTCTCTATATATCTTAGTA
CATATCGGTCGAACGGAGACTGACACTCCCCCGCCCCTCCCCTGA
Found at i:240422 original size:5 final size:5
Alignment explanation
Indices: 240414--240505 Score: 184
Period size: 5 Copynumber: 18.4 Consensus size: 5
240404 ATATCAAATA
240414 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
240464 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TA
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TA
240506 GAGAGGGGGG
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 87 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 239914 -- 240413
TACGCGACATCTATAGTTGGAGCAAATCAGATACTGTTCTGCATATTTACGAATGAATTGTGAAT
CGGATCGGATTAGCCGATCTATACTGTTACGGATGAATCGACTGATTACACGGTAGCGCCATATA
GATATATAGGGCTCTCCCTCGACCGATGTATCTCGCTCACATTGACTATAGAGAGTCCGCCCTTC
GGCCGGCTACCCATCAATAATTCCTAGTGGGGCCCTATATCTATATATATATCTGGGAAGGACGA
TGGATGCCCGGGCATTGCCATATAGAAACAGAAGGGGAGGGAAGGTAGAGTGGGAAGGGAATAGT
TTGCCAATGATTCCCCGGGTCTCGTCTTGTCTGTTTCGTTGCGTTGAGTTGTTGGTCGCCATATC
TCTCTCTATATATATATATATATGCACGATGAGAGAGATGCCCTATCTGTGATCGGGAGATCGGT
TGTATCACGTATATAATGGATAGATAGTTTCTATCATATCAAATA
Right flanking sequence: Indices 240506 -- 241005
GAGAGGGGGGCCGAATCGATCGATCGAAGGATCGGTCAATTACAAACTTCATGGATGGGACCGAG
AGATACTCTATTATATCTATATATATGGCTCTCAGGTCTATGGGAGAAGATCTTGAATAGATATA
GAGAGAGGGGCGCCCCCTCTACTCTCTATATCTGGGGAGGCCCCCCTCACCCTCCAGATAGAGAT
ATAGGGGCGGGTGAGATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATAGAGA
TCGATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGATC
CCCCTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGATCCCCCCTCTCTA
TATAGATATTCAACCTCACCCAGATAGAATAGAGATGGCGGGTGAGTACCCCTCTATCTATATCT
GTCCTCACCCTCCAGATAGAGATATAGAGAGAGGGGCGGGCCCCT
Found at i:240784 original size:53 final size:55
Alignment explanation
Indices: 240715--240869 Score: 210
Period size: 53 Copynumber: 2.9 Consensus size: 55
240705 GGGCGGGTGA
240715 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATA-GAGA-TC
1 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATATGAGATTC
***
240768 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTC
1 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATATGAGATTC
** **
240823 TCTCGATCCC-C-CTCTCTATATAGATATTCAACCCCCTTTCTATATAT
1 GATC-CCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATAT
240870 TCTATTCTCT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
53 47 0.51
54 37 0.40
55 5 0.05
56 3 0.03
ACGTcount: A:0.23, C:0.34, G:0.05, T:0.37
Consensus pattern (55 bp):
GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATATGAGATTC
Left flanking sequence: Indices 240215 -- 240714
AAGGTAGAGTGGGAAGGGAATAGTTTGCCAATGATTCCCCGGGTCTCGTCTTGTCTGTTTCGTTG
CGTTGAGTTGTTGGTCGCCATATCTCTCTCTATATATATATATATATGCACGATGAGAGAGATGC
CCTATCTGTGATCGGGAGATCGGTTGTATCACGTATATAATGGATAGATAGTTTCTATCATATCA
AATATATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGT
ATAGTATAGTATAGTATAGTATAGTATAGTAGAGAGGGGGGCCGAATCGATCGATCGAAGGATCG
GTCAATTACAAACTTCATGGATGGGACCGAGAGATACTCTATTATATCTATATATATGGCTCTCA
GGTCTATGGGAGAAGATCTTGAATAGATATAGAGAGAGGGGCGCCCCCTCTACTCTCTATATCTG
GGGAGGCCCCCCTCACCCTCCAGATAGAGATATAGGGGCGGGTGA
Right flanking sequence: Indices 240870 -- 241369
TCTATTCTCTCGATCCCCCCTCTCTATATAGATATTCAACCTCACCCAGATAGAATAGAGATGGC
GGGTGAGTACCCCTCTATCTATATCTGTCCTCACCCTCCAGATAGAGATATAGAGAGAGGGGCGG
GCCCCTCCCCTCCCCTCTCTATAGATCGAGATCTCGATCTCGATCGATCAGATCTGGCAGATAGA
TAGAGAGATTGGGGGCCGAGCCGAGAGAGTTCAGGGGGGGCGGGTGAGTGCGGATATAGTTGATC
GGGGCCCTCTATATATATATCTGGGAATCTATATAGGGGCATCAGTCATATCACGTATAGAATAG
ATGATGCGGATGATAGATGATAGGGAGAGGGGGAATAGCTCAGTCGGTTAGAGTGCTGGTCTGTC
ACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGATCATGCCAGGTGGAATAAGACAGGATT
CATGGTTGGTAGAATGGTGATCGATCGTGGCGCTCCGGTTATATA
Found at i:240862 original size:54 final size:55
Alignment explanation
Indices: 240780--240910 Score: 255
Period size: 54 Copynumber: 2.4 Consensus size: 55
240770 TCCCCCCTCT
240780 CTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGAT-CCCC
1 CTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGATCCCCC
240834 CTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGATCCCCC
1 CTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGATCCCCC
240889 CTCTCTATATAGATATTCAACC
1 CTCTCTATATAGATATTCAACC
240911 TCACCCAGAT
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
54 50 0.66
55 26 0.34
ACGTcount: A:0.24, C:0.33, G:0.04, T:0.40
Consensus pattern (55 bp):
CTCTCTATATAGATATTCAACCCCCTTTCTATATATTCTATTCTCTCGATCCCCC
Left flanking sequence: Indices 240280 -- 240779
CGTTGAGTTGTTGGTCGCCATATCTCTCTCTATATATATATATATATGCACGATGAGAGAGATGC
CCTATCTGTGATCGGGAGATCGGTTGTATCACGTATATAATGGATAGATAGTTTCTATCATATCA
AATATATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGT
ATAGTATAGTATAGTATAGTATAGTATAGTAGAGAGGGGGGCCGAATCGATCGATCGAAGGATCG
GTCAATTACAAACTTCATGGATGGGACCGAGAGATACTCTATTATATCTATATATATGGCTCTCA
GGTCTATGGGAGAAGATCTTGAATAGATATAGAGAGAGGGGCGCCCCCTCTACTCTCTATATCTG
GGGAGGCCCCCCTCACCCTCCAGATAGAGATATAGGGGCGGGTGAGATCCCCCCTCTCTCTCTAT
ATAGATATTCAACCCCCTTTCTATATAGAGATCGATCCCCCCTCT
Right flanking sequence: Indices 240911 -- 241410
TCACCCAGATAGAATAGAGATGGCGGGTGAGTACCCCTCTATCTATATCTGTCCTCACCCTCCAG
ATAGAGATATAGAGAGAGGGGCGGGCCCCTCCCCTCCCCTCTCTATAGATCGAGATCTCGATCTC
GATCGATCAGATCTGGCAGATAGATAGAGAGATTGGGGGCCGAGCCGAGAGAGTTCAGGGGGGGC
GGGTGAGTGCGGATATAGTTGATCGGGGCCCTCTATATATATATCTGGGAATCTATATAGGGGCA
TCAGTCATATCACGTATAGAATAGATGATGCGGATGATAGATGATAGGGAGAGGGGGAATAGCTC
AGTCGGTTAGAGTGCTGGTCTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGATCA
TGCCAGGTGGAATAAGACAGGATTCATGGTTGGTAGAATGGTGATCGATCGTGGCGCTCCGGTTA
TATAGATATAGGGCCCCCAGCCCAGAGAGATATATAGGGCTGTTG
Found at i:240875 original size:25 final size:25
Alignment explanation
Indices: 240793--240876 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 25
240783 TCTATATAGA
240793 TATTCAACCCCCTTTCTATATATTC
1 TATTCAACCCCCTTTCTATATATTC
* * **
240818 TATTCTCTCGATCCCCCTCTCTATATA-GA
1 TA---T-TC-AACCCCCTTTCTATATATTC
240847 TATTCAACCCCCTTTCTATATATTC
1 TATTCAACCCCCTTTCTATATATTC
240872 TATTC
1 TATTC
240877 TCTCGATCCC
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
24 15 0.33
25 9 0.20
26 1 0.02
28 1 0.02
29 4 0.09
30 15 0.33
ACGTcount: A:0.23, C:0.32, G:0.02, T:0.43
Consensus pattern (25 bp):
TATTCAACCCCCTTTCTATATATTC
Left flanking sequence: Indices 240293 -- 240792
GTCGCCATATCTCTCTCTATATATATATATATATGCACGATGAGAGAGATGCCCTATCTGTGATC
GGGAGATCGGTTGTATCACGTATATAATGGATAGATAGTTTCTATCATATCAAATATATAGTATA
GTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATA
GTATAGTATAGTATAGTAGAGAGGGGGGCCGAATCGATCGATCGAAGGATCGGTCAATTACAAAC
TTCATGGATGGGACCGAGAGATACTCTATTATATCTATATATATGGCTCTCAGGTCTATGGGAGA
AGATCTTGAATAGATATAGAGAGAGGGGCGCCCCCTCTACTCTCTATATCTGGGGAGGCCCCCCT
CACCCTCCAGATAGAGATATAGGGGCGGGTGAGATCCCCCCTCTCTCTCTATATAGATATTCAAC
CCCCTTTCTATATAGAGATCGATCCCCCCTCTCTCTCTATATAGA
Right flanking sequence: Indices 240877 -- 241376
TCTCGATCCCCCCTCTCTATATAGATATTCAACCTCACCCAGATAGAATAGAGATGGCGGGTGAG
TACCCCTCTATCTATATCTGTCCTCACCCTCCAGATAGAGATATAGAGAGAGGGGCGGGCCCCTC
CCCTCCCCTCTCTATAGATCGAGATCTCGATCTCGATCGATCAGATCTGGCAGATAGATAGAGAG
ATTGGGGGCCGAGCCGAGAGAGTTCAGGGGGGGCGGGTGAGTGCGGATATAGTTGATCGGGGCCC
TCTATATATATATCTGGGAATCTATATAGGGGCATCAGTCATATCACGTATAGAATAGATGATGC
GGATGATAGATGATAGGGAGAGGGGGAATAGCTCAGTCGGTTAGAGTGCTGGTCTGTCACGCCAG
AAGTCGCGGGTTCGAACCCCGTTTTCCCCGATCATGCCAGGTGGAATAAGACAGGATTCATGGTT
GGTAGAATGGTGATCGATCGTGGCGCTCCGGTTATATAGATATAG
Found at i:242734 original size:11 final size:11
Alignment explanation
Indices: 242718--242743 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
242708 CCCAGATAGC
242718 CCCTCCGGAGA
1 CCCTCCGGAGA
242729 CCCTCCGGAGA
1 CCCTCCGGAGA
242740 CCCT
1 CCCT
242744 ACCCTCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.50, G:0.23, T:0.12
Consensus pattern (11 bp):
CCCTCCGGAGA
Left flanking sequence: Indices 242218 -- 242717
GTCCTCCCGGCCGGGTCCCCTATAGTTCTATATGGGTCCTCCCGGTAAGGATATAGAGGGCCCAT
CCCATAATATTCTTTCTATACAGCATAGCCGCCGCGCTCTCCGCTATATAGAGTAGAGTGGGCCA
TCGGGGGAGTCCCTCAAGGATATAAGCCATTTATCGATATAGTAGGCCGTCGGGCCCTCATCTAT
CTAATCCATATAGGGGCTGGATTAATAGGCTCTGTATATAGGGGAGATAGTCATGCTCATAACTC
AACCCGTCGTGTCGCCCCGAGCCGCCATCGGGCCTATCGGTGGGAGGGGGTGAGTTCTCTATATA
GGGCCGACTAGATATAGATAGCTATAGCCGCACCCGCCCCCTTCTTGGGTCTCGATCCCTCGCCA
TAGAGAGGTGGGACCACCTATATAGATCTAGAGATCTAGCTGCGAGTGCCCTATCTAAATAGAGA
ATTGGGGCCCTCGATTGATGACAATCGAGTCCCTCCCCAGATAGC
Right flanking sequence: Indices 242744 -- 243243
ACCCTCTATTTTCTCTCATCCGGAGGGTCTCCGGAGGGGCGGGAGACAAGGTATAGATAGATGGG
GCCCCCCCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGCTCCCCTCTCTATTC
TATCTTATCTCGGTATTCTCCCCCCCCCTCTCTCACCCCCCCTCTCTCTATATGGGTGAGAGAGG
GGGGGCGAGAGAGGGCTCGGCTCCCCGGGGGCCCTCTCTATTCTATCTTATCTCGCCATATAGAT
AGTTCAGGGCTCCCCCCATCTATATAGAAGGGCTCGGTATTCTCTATATGGCCTCCAGATCCATA
TCTATATAGGGGGCCCCCATATAGATCTAGATAGGGGAGAATAGATAGGGGGTTGAGTGGTTCGC
TGACGCTCACACCTCGACCCCCTCGACATCTATATAGAGGGGGGGGTCGAGCTCTATTAATCCTC
TACTCTACGCTATACCAGTCATCGTCATCAGTCGTATCACGTATA
Done.