Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469769
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
File 1 of 7
Found at i:1639 original size:9 final size:9
Alignment explanation
Indices: 1618--1680 Score: 90
Period size: 9 Copynumber: 7.0 Consensus size: 9
1608 CTCGCTCGAG
*
1618 ACTCCACTT
1 ACTCCACTC
*
1627 ACTCTACTC
1 ACTCCACTC
1636 ACTCCACTC
1 ACTCCACTC
*
1645 ACTCTACTC
1 ACTCCACTC
1654 ACTCCACTC
1 ACTCCACTC
1663 ACTCCACTC
1 ACTCCACTC
*
1672 ACTCTACTC
1 ACTCCACTC
1681 TAATTGAGGG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 48 1.00
ACGTcount: A:0.22, C:0.49, G:0.00, T:0.29
Consensus pattern (9 bp):
ACTCCACTC
Left flanking sequence: Indices 1118 -- 1617
GGCCTAGGGGCGCCCCCAGATCGTCATAGGGTGACCCCGGGCCCCCGGATAGATATCTACATTTC
CCATCTATATTCTATATATATAGATCTATCGCTCACCCCATATATAGATGGGATAGGGGCCCGGC
CACTATAGAGAGTAGGCCGTTGCCATATCTCTAATCTGAACTAGGAGGGGGGGGGGCAGAAATGC
TATACCCTGCCCCCGGTGGGAGATGGGATGGAGGGATAGATCCGAGTGCCGACTAGAGCCCATAG
AGAGTTAAAATAGGGCGGGGGCGGCTATATAGAGAGAGGGGCCGCCTAGATATAGGGCCTATCTA
GATAGTTGAGGGCGACTATCGACTATTCTATATTAGAGTCTAGTCGGCGCTCGACCGAGATAGAT
ATATAGGGCCGTGCCATAATCTGGATAGGGGTATCTCTCTCTATCTGAGAGCCTTCTATTCATCT
CTCGCTCGAGAGAGAGGACCGGACCGGGAATAGACCTCGCTCGAG
Right flanking sequence: Indices 1681 -- 2180
TAATTGAGGGAATAGGGGAGGCCCCTCGGGGGGGAGGCCCCCCGGGGGGGAGGCCCCTCGGGGGG
AGGCCCCTCTCTCTAGAGGGGAGCTCTGACTATCTATCAGCCCGTGGACATCGGTATTGCGAAGG
GAATAATCCATTTATTCATCGATCTCTCTCCCATGACGACTAGGAACAAACAAATAAGAAATTCC
ACTTCGAATTCTGGACCTCAACATCCTGCTGCTCATGGTGTTCCACGATCAGTATCGGAAATGGA
CGGAGAAGTGGTGGAACGTGCGGAACCGCATATTGGATCACTCCATAGAGGCACAGAGAAATTGA
TGGAGTACAAAACGTATCTTCAGGCTCTACCCCATTTTGATCGTTTAGAGGGCGATCGCGGAGTC
ACTGAATGAAGTCCGCCTAGATTCTATAGGTATAGGGCCCGGCCCAATATCTATAGATCGAGACA
GCGAGGCAGAGATGACTAAGTGACACATAGGAGATGGCGGCGACA
Found at i:1753 original size:15 final size:16
Alignment explanation
Indices: 1695--1754 Score: 104
Period size: 16 Copynumber: 3.8 Consensus size: 16
1685 TGAGGGAATA
1695 GGGGAGGCCCCTCGGG
1 GGGGAGGCCCCTCGGG
*
1711 GGGGAGGCCCCCCGGG
1 GGGGAGGCCCCTCGGG
1727 GGGGAGGCCCCTC-GG
1 GGGGAGGCCCCTCGGG
1742 GGGGAGGCCCCTC
1 GGGGAGGCCCCTC
1755 TCTCTAGAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
15 15 0.36
16 27 0.64
ACGTcount: A:0.07, C:0.35, G:0.53, T:0.05
Consensus pattern (16 bp):
GGGGAGGCCCCTCGGG
Left flanking sequence: Indices 1195 -- 1694
TATATATATAGATCTATCGCTCACCCCATATATAGATGGGATAGGGGCCCGGCCACTATAGAGAG
TAGGCCGTTGCCATATCTCTAATCTGAACTAGGAGGGGGGGGGGCAGAAATGCTATACCCTGCCC
CCGGTGGGAGATGGGATGGAGGGATAGATCCGAGTGCCGACTAGAGCCCATAGAGAGTTAAAATA
GGGCGGGGGCGGCTATATAGAGAGAGGGGCCGCCTAGATATAGGGCCTATCTAGATAGTTGAGGG
CGACTATCGACTATTCTATATTAGAGTCTAGTCGGCGCTCGACCGAGATAGATATATAGGGCCGT
GCCATAATCTGGATAGGGGTATCTCTCTCTATCTGAGAGCCTTCTATTCATCTCTCGCTCGAGAG
AGAGGACCGGACCGGGAATAGACCTCGCTCGAGACTCCACTTACTCTACTCACTCCACTCACTCT
ACTCACTCCACTCACTCCACTCACTCTACTCTAATTGAGGGAATA
Right flanking sequence: Indices 1755 -- 2254
TCTCTAGAGGGGAGCTCTGACTATCTATCAGCCCGTGGACATCGGTATTGCGAAGGGAATAATCC
ATTTATTCATCGATCTCTCTCCCATGACGACTAGGAACAAACAAATAAGAAATTCCACTTCGAAT
TCTGGACCTCAACATCCTGCTGCTCATGGTGTTCCACGATCAGTATCGGAAATGGACGGAGAAGT
GGTGGAACGTGCGGAACCGCATATTGGATCACTCCATAGAGGCACAGAGAAATTGATGGAGTACA
AAACGTATCTTCAGGCTCTACCCCATTTTGATCGTTTAGAGGGCGATCGCGGAGTCACTGAATGA
AGTCCGCCTAGATTCTATAGGTATAGGGCCCGGCCCAATATCTATAGATCGAGACAGCGAGGCAG
AGATGACTAAGTGACACATAGGAGATGGCGGCGACAACAGCATGTCAGATGGCAACTCCTCGAGC
GGCAGTGGAACGGCGTGAATGCGAGATGCGGAATGATCGGCCGGG
Found at i:5710 original size:23 final size:23
Alignment explanation
Indices: 5684--5728 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
5674 GTAGCATCAC
5684 CCCCAGCCAATATAGCCAGCCAG
1 CCCCAGCCAATATAGCCAGCCAG
5707 CCCCAGCCAATATAGCCAGCCA
1 CCCCAGCCAATATAGCCAGCCA
5729 ATATAGTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.44, G:0.16, T:0.09
Consensus pattern (23 bp):
CCCCAGCCAATATAGCCAGCCAG
Left flanking sequence: Indices 5184 -- 5683
AGCCGATGATCGTAAGCTATGTCCCCCATCACGATGCCAAATGAAACTCCCCATGGAATCCTCAA
TCCACCATTTCGAACTCTATACAGAGGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTT
GAAGCACCTAAAGGAGAATTTGGTGTGTTTCTGGTCAGTAATGGGAGCAATCGCCCCTATCGTCG
TAGAACAAGAGCACCTGGCTTTGCCCATTCACAAGGACCTGATTCTATGTCCAAGCATCACATGC
CAGCAGATGTGGTCACCACCACCGGTACTCAAGATATTGTGTTTGGGGAGGTAGATAGATAGGGA
GAGGACAGTTGGTTGCTCACCCTAGCTTCATTGCGAGCCAGGAACAACTGCCATATAGAACTCTA
GGGTACCCGGTGGGTCGAGGGAGGTAGATAGGTCGCTCGTGATTACACCACCATCATGCATCATG
TTACGTATATAGTATGGTATGGCGTTACCATCACTGTAGCATCAC
Right flanking sequence: Indices 5729 -- 6228
ATATAGTATGGCATTACCATCACTGTACCTCGATCTGGTATGGCGTTACCATCACTGTAGCATCA
CCAATAATCAGTCAGGGCCTCCTGACGTCCACCCCCACCCTCTAGATCATATCTATATGGCAACG
GGAGAGGAGGCCCCCCCATAGAGAAGAGAGTTCAGGGAGGGGGCTCCCCTCTATTCTCTGGAGGG
GGGGCCCCCTCTCTCCCATAGAGAGAGAGGGGGGGGGACAGATAGGGGCCCCCCATAGATAGGCC
CCCCTAGATCTCTATGGGGGAGAGGGGGGGCCTACTATATGACTGACTATATGACTATATTACAC
AGCTGGGAGAGGGATTGATTTCGGAGTCTCTGTGCGAGCCGTATGCGGTGAGAGTCGCACGTACG
GTTACGGGGGGGGGTTCACGTCTATCGCATAGTGTGGTGGCCTACCCCATTTGTTCCATGATCTA
TGGGTCTACTGGAGTGACCCACTTCGATCAATTAGCCGAGATTTT
Found at i:5727 original size:13 final size:13
Alignment explanation
Indices: 5709--5734 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5699 CCAGCCAGCC
5709 CCAGCCAATATAG
1 CCAGCCAATATAG
5722 CCAGCCAATATAG
1 CCAGCCAATATAG
5735 TATGGCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (13 bp):
CCAGCCAATATAG
Left flanking sequence: Indices 5209 -- 5708
CCATCACGATGCCAAATGAAACTCCCCATGGAATCCTCAATCCACCATTTCGAACTCTATACAGA
GGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTG
TGTTTCTGGTCAGTAATGGGAGCAATCGCCCCTATCGTCGTAGAACAAGAGCACCTGGCTTTGCC
CATTCACAAGGACCTGATTCTATGTCCAAGCATCACATGCCAGCAGATGTGGTCACCACCACCGG
TACTCAAGATATTGTGTTTGGGGAGGTAGATAGATAGGGAGAGGACAGTTGGTTGCTCACCCTAG
CTTCATTGCGAGCCAGGAACAACTGCCATATAGAACTCTAGGGTACCCGGTGGGTCGAGGGAGGT
AGATAGGTCGCTCGTGATTACACCACCATCATGCATCATGTTACGTATATAGTATGGTATGGCGT
TACCATCACTGTAGCATCACCCCCAGCCAATATAGCCAGCCAGCC
Right flanking sequence: Indices 5735 -- 6234
TATGGCATTACCATCACTGTACCTCGATCTGGTATGGCGTTACCATCACTGTAGCATCACCAATA
ATCAGTCAGGGCCTCCTGACGTCCACCCCCACCCTCTAGATCATATCTATATGGCAACGGGAGAG
GAGGCCCCCCCATAGAGAAGAGAGTTCAGGGAGGGGGCTCCCCTCTATTCTCTGGAGGGGGGGCC
CCCTCTCTCCCATAGAGAGAGAGGGGGGGGGACAGATAGGGGCCCCCCATAGATAGGCCCCCCTA
GATCTCTATGGGGGAGAGGGGGGGCCTACTATATGACTGACTATATGACTATATTACACAGCTGG
GAGAGGGATTGATTTCGGAGTCTCTGTGCGAGCCGTATGCGGTGAGAGTCGCACGTACGGTTACG
GGGGGGGGTTCACGTCTATCGCATAGTGTGGTGGCCTACCCCATTTGTTCCATGATCTATGGGTC
TACTGGAGTGACCCACTTCGATCAATTAGCCGAGATTTTGACCGG
Found at i:6657 original size:12 final size:12
Alignment explanation
Indices: 6637--6681 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
6627 CCCCATATCT
6637 AGATATAGAGAG
1 AGATATAGAGAG
* * *
6649 AGATCTAGATAT
1 AGATATAGAGAG
6661 AGATATAGAGAG
1 AGATATAGAGAG
6673 AGATATAGA
1 AGATATAGA
6682 TAGGGGGGCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.49, C:0.02, G:0.27, T:0.22
Consensus pattern (12 bp):
AGATATAGAGAG
Left flanking sequence: Indices 6137 -- 6636
CGTCTATCGCATAGTGTGGTGGCCTACCCCATTTGTTCCATGATCTATGGGTCTACTGGAGTGAC
CCACTTCGATCAATTAGCCGAGATTTTGACCGGATATGAAATGACTTTGTTCGGTGCTCGATCCG
GTGGTATTTTTGCGGGGATTCTATTCATCGCTGTAGGATCTTTATCCAAGATCACTGCAGTTCCC
TTTCGGGCGGCTGTAGGACGGCCGCCTATGGGTGGTCGACAGATTGCGGCCAATCGACAAAACCA
ACTGCCCGCCTTCTCCGAGAGGACAGGACATTTATAGGCTGGGCGCCCATAGATTAATAGGCCCC
TCTCCCGCCCCTATATCTATAGGCGGTCCCCCTCTATATCTAGATGGGGCGCTCGGCCGATGGAT
AGGCCGAGGGCCCCTATGACGATATGGGGAGCCCAGATCTAGATAGGGGGCCCTCGACTTCCTCG
GCCCCCCCCCTATCTAGATTCATATTCTCTATGGCCCCCATATCT
Right flanking sequence: Indices 6682 -- 7181
TAGGGGGGCCGAGGTGTGAGCGATAGATCTAGATAATAACTAGAAGATATATGGGGTGGGGGCGC
TCGGCCCCATATAGATATAAGGGCCCCCGCCCCGGGGGCCCCTATGACGATATGGGGGGCCCCCT
ATAACTCTATGGGGCACTCCCCCGAGTTCTATCGGCCAACGCCCTATCTATCTATGGGGACCCTA
GAGTTCTATATGCCCCCCCCCTCCCCCTCTTCTATATCTTATCTTATTCCCTCTATAGAGAAGGG
GGGGGGGCCCGCCCTATCTAATCTGAACGCCCATATAGAGAATAGATAGGGCCCCTATAGATCTA
TATGCCTATATATCCCCTCCATATGGGCCCTATCTATATCTCCCTATAGTTCTATATGCCTATAT
ATCCCCGAAGGGGGGGCCCTCTCTCTCTATGGGGCCCCCCATATAGATATATATATCTATAGGGC
CCCCATAGAGAAGATAGTTCAGGGAGCCCTAGATTCTAGATTCTA
Found at i:6658 original size:6 final size:6
Alignment explanation
Indices: 6636--6683 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
6626 CCCCCATATC
* * * * *
6636 TAGATA TAGAGA GAGATC TAGATA TAGATA TAGAGA GAGATA TAGATA
1 TAGATA TAGATA TAGATA TAGATA TAGATA TAGATA TAGATA TAGATA
6684 GGGGGGCCGA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.48, C:0.02, G:0.25, T:0.25
Consensus pattern (6 bp):
TAGATA
Left flanking sequence: Indices 6136 -- 6635
ACGTCTATCGCATAGTGTGGTGGCCTACCCCATTTGTTCCATGATCTATGGGTCTACTGGAGTGA
CCCACTTCGATCAATTAGCCGAGATTTTGACCGGATATGAAATGACTTTGTTCGGTGCTCGATCC
GGTGGTATTTTTGCGGGGATTCTATTCATCGCTGTAGGATCTTTATCCAAGATCACTGCAGTTCC
CTTTCGGGCGGCTGTAGGACGGCCGCCTATGGGTGGTCGACAGATTGCGGCCAATCGACAAAACC
AACTGCCCGCCTTCTCCGAGAGGACAGGACATTTATAGGCTGGGCGCCCATAGATTAATAGGCCC
CTCTCCCGCCCCTATATCTATAGGCGGTCCCCCTCTATATCTAGATGGGGCGCTCGGCCGATGGA
TAGGCCGAGGGCCCCTATGACGATATGGGGAGCCCAGATCTAGATAGGGGGCCCTCGACTTCCTC
GGCCCCCCCCCTATCTAGATTCATATTCTCTATGGCCCCCATATC
Right flanking sequence: Indices 6684 -- 7183
GGGGGGCCGAGGTGTGAGCGATAGATCTAGATAATAACTAGAAGATATATGGGGTGGGGGCGCTC
GGCCCCATATAGATATAAGGGCCCCCGCCCCGGGGGCCCCTATGACGATATGGGGGGCCCCCTAT
AACTCTATGGGGCACTCCCCCGAGTTCTATCGGCCAACGCCCTATCTATCTATGGGGACCCTAGA
GTTCTATATGCCCCCCCCCTCCCCCTCTTCTATATCTTATCTTATTCCCTCTATAGAGAAGGGGG
GGGGGCCCGCCCTATCTAATCTGAACGCCCATATAGAGAATAGATAGGGCCCCTATAGATCTATA
TGCCTATATATCCCCTCCATATGGGCCCTATCTATATCTCCCTATAGTTCTATATGCCTATATAT
CCCCGAAGGGGGGGCCCTCTCTCTCTATGGGGCCCCCCATATAGATATATATATCTATAGGGCCC
CCATAGAGAAGATAGTTCAGGGAGCCCTAGATTCTAGATTCTATG
Found at i:6667 original size:24 final size:24
Alignment explanation
Indices: 6636--6683 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
6626 CCCCCATATC
*
6636 TAGATATAGAGAGAGATCTAGATA
1 TAGATATAGAGAGAGATATAGATA
6660 TAGATATAGAGAGAGATATAGATA
1 TAGATATAGAGAGAGATATAGATA
6684 GGGGGGCCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.25, T:0.25
Consensus pattern (24 bp):
TAGATATAGAGAGAGATATAGATA
Left flanking sequence: Indices 6136 -- 6635
ACGTCTATCGCATAGTGTGGTGGCCTACCCCATTTGTTCCATGATCTATGGGTCTACTGGAGTGA
CCCACTTCGATCAATTAGCCGAGATTTTGACCGGATATGAAATGACTTTGTTCGGTGCTCGATCC
GGTGGTATTTTTGCGGGGATTCTATTCATCGCTGTAGGATCTTTATCCAAGATCACTGCAGTTCC
CTTTCGGGCGGCTGTAGGACGGCCGCCTATGGGTGGTCGACAGATTGCGGCCAATCGACAAAACC
AACTGCCCGCCTTCTCCGAGAGGACAGGACATTTATAGGCTGGGCGCCCATAGATTAATAGGCCC
CTCTCCCGCCCCTATATCTATAGGCGGTCCCCCTCTATATCTAGATGGGGCGCTCGGCCGATGGA
TAGGCCGAGGGCCCCTATGACGATATGGGGAGCCCAGATCTAGATAGGGGGCCCTCGACTTCCTC
GGCCCCCCCCCTATCTAGATTCATATTCTCTATGGCCCCCATATC
Right flanking sequence: Indices 6684 -- 7183
GGGGGGCCGAGGTGTGAGCGATAGATCTAGATAATAACTAGAAGATATATGGGGTGGGGGCGCTC
GGCCCCATATAGATATAAGGGCCCCCGCCCCGGGGGCCCCTATGACGATATGGGGGGCCCCCTAT
AACTCTATGGGGCACTCCCCCGAGTTCTATCGGCCAACGCCCTATCTATCTATGGGGACCCTAGA
GTTCTATATGCCCCCCCCCTCCCCCTCTTCTATATCTTATCTTATTCCCTCTATAGAGAAGGGGG
GGGGGCCCGCCCTATCTAATCTGAACGCCCATATAGAGAATAGATAGGGCCCCTATAGATCTATA
TGCCTATATATCCCCTCCATATGGGCCCTATCTATATCTCCCTATAGTTCTATATGCCTATATAT
CCCCGAAGGGGGGGCCCTCTCTCTCTATGGGGCCCCCCATATAGATATATATATCTATAGGGCCC
CCATAGAGAAGATAGTTCAGGGAGCCCTAGATTCTAGATTCTATG
Found at i:6822 original size:22 final size:21
Alignment explanation
Indices: 6780--6825 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
6770 CCCCCGCCCC
*
6780 GGGGGCCCCTATGACGATATG
1 GGGGGCCCCTATAACGATATG
**
6801 GGGGGCCCCCTATAACTCTATG
1 GGGGG-CCCCTATAACGATATG
6823 GGG
1 GGG
6826 CACTCCCCCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.17, C:0.26, G:0.37, T:0.20
Consensus pattern (21 bp):
GGGGGCCCCTATAACGATATG
Left flanking sequence: Indices 6280 -- 6779
GGGGATTCTATTCATCGCTGTAGGATCTTTATCCAAGATCACTGCAGTTCCCTTTCGGGCGGCTG
TAGGACGGCCGCCTATGGGTGGTCGACAGATTGCGGCCAATCGACAAAACCAACTGCCCGCCTTC
TCCGAGAGGACAGGACATTTATAGGCTGGGCGCCCATAGATTAATAGGCCCCTCTCCCGCCCCTA
TATCTATAGGCGGTCCCCCTCTATATCTAGATGGGGCGCTCGGCCGATGGATAGGCCGAGGGCCC
CTATGACGATATGGGGAGCCCAGATCTAGATAGGGGGCCCTCGACTTCCTCGGCCCCCCCCCTAT
CTAGATTCATATTCTCTATGGCCCCCATATCTAGATATAGAGAGAGATCTAGATATAGATATAGA
GAGAGATATAGATAGGGGGGCCGAGGTGTGAGCGATAGATCTAGATAATAACTAGAAGATATATG
GGGTGGGGGCGCTCGGCCCCATATAGATATAAGGGCCCCCGCCCC
Right flanking sequence: Indices 6826 -- 7325
CACTCCCCCGAGTTCTATCGGCCAACGCCCTATCTATCTATGGGGACCCTAGAGTTCTATATGCC
CCCCCCCTCCCCCTCTTCTATATCTTATCTTATTCCCTCTATAGAGAAGGGGGGGGGGCCCGCCC
TATCTAATCTGAACGCCCATATAGAGAATAGATAGGGCCCCTATAGATCTATATGCCTATATATC
CCCTCCATATGGGCCCTATCTATATCTCCCTATAGTTCTATATGCCTATATATCCCCGAAGGGGG
GGCCCTCTCTCTCTATGGGGCCCCCCATATAGATATATATATCTATAGGGCCCCCATAGAGAAGA
TAGTTCAGGGAGCCCTAGATTCTAGATTCTATGGAGGGCCCTATAGAGAGATATGGCGATAGCCA
TATAGATATAAAGGGGGCCTAGATAGGGGGGGGCATTTCTGCTCCCCTCTCTATCTGAACTATGG
CGACCCTGAACTATGGGAGATCGAGGCACCCTATATAGATAGATA
Found at i:7735 original size:16 final size:16
Alignment explanation
Indices: 7689--7735 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
7679 CACGCTGCTT
*
7689 GCTTGCACTAACACCA
1 GCTTGCACTAACACTA
7705 GCTTGCACTAACACTA
1 GCTTGCACTAACACTA
7721 GCTTGCACTAACACT
1 GCTTGCACTAACACT
7736 GATAGATCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (16 bp):
GCTTGCACTAACACTA
Left flanking sequence: Indices 7189 -- 7688
CCCTATAGAGAGATATGGCGATAGCCATATAGATATAAAGGGGGCCTAGATAGGGGGGGGCATTT
CTGCTCCCCTCTCTATCTGAACTATGGCGACCCTGAACTATGGGAGATCGAGGCACCCTATATAG
ATAGATACGGCCTACTATACTCTGCCCATAGATCTAGAGGGGCTGGGGGAGGGGCACTCGAGAGA
TCGAGGCCCCCCTCTCTCCCCCCCTATAGATCTATGGAAGAGAGGGGGTGCTCCCTTTCTATCTA
TATATGGCGATAGGGAGAGGAGAGCGCGACTCATCACTACCTCGTAAGGGCGTTGAGACCATAGC
ATGTTACACGCCTTTCTCCGTAGCCGCCCGCCCAGAAGAGCCGCTCGCTCCATAGTGTTGTCGCA
CAAGATAAGCACGCCGCCTGCTTGGCGAATCGAAGTTCTCTCCTGGTCAACTGTCCACCCAGTGA
AGTGCGAACGTAACAGTGGAATGCCACGGCGAACGCACGCTGCTT
Right flanking sequence: Indices 7736 -- 8235
GATAGATCTGGTGTGCCTCCTGCCCGTCGACGAGGAAAGAGCGGCAAGGTTCAGATTCGGAAGTT
ACTGCTTGCAGCATGGGAGCTGATCACCCAACAACTCTCTGGGAACAATGGGAAAAAGGATATCC
CGATAACGGAAACCATAGGGGGCTGTATCGGCGAGATCCAACGGTGAACAACTCTATTCTCCAGA
AGAAAACCCCGGCTGGAAGTCTGAGGACCTTTAGTACCAGCAGCCAGCGCTTCGCGCCCGATCTA
TAGGCTATCGCCATACCATATAAAAACTCTATATAGGGGGGGGGGTGCCCCCCCCTATATAGATA
GGGGCGGGGGAGTGCCTCGACCTATCGATCGAGTGCATAAATGAATGCCCTAAAGGAAAGGTAAA
GGGAAAGGCCCTCCCCCCATCTATATAGAGTGCCTAAAGGCCCTCTATATAGATGGGATAAGATC
TATAGGGAGGGGGGTGCCCTGCCCATATATAGATAGGGCGGGCCC
Found at i:12271 original size:45 final size:47
Alignment explanation
Indices: 12219--12329 Score: 172
Period size: 45 Copynumber: 2.4 Consensus size: 47
12209 GCCATCTCTC
*
12219 GGGCCCTATAACCTATATATAGCCCTATATCTTCACC-T-AGAGTTG
1 GGGCCCTATAACCTATATATAGCCCTATATCTCCACCATAAGAGTTG
12264 GGGCCCTATAACCTATATATAGCCCTATATCTCCACCTATAGAGAGTTG
1 GGGCCCTATAACCTATATATAGCCCTATATCTCCACC-ATA-AGAGTTG
*
12313 GGGCCCTATAACTTATA
1 GGGCCCTATAACCTATA
12330 GAGGGTTGGG
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
45 36 0.60
47 1 0.02
49 23 0.38
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (47 bp):
GGGCCCTATAACCTATATATAGCCCTATATCTCCACCATAAGAGTTG
Left flanking sequence: Indices 11719 -- 12218
CTATAGAGAGTCAGCCAACAACGAGATGGCCACGGTCGAATATTCGGGTGACCCCCCATAGATAG
GGGCCCCCCCGGGGGAAGGGGGCCGAGCGCCGAGCCGAGTTTAATGGTATGCCGGGATGCCGGGG
ATGAGTGATTCACTATATCTATCTCAGATTCCCCGATTCCGAACGATCCGTTCCCCCCCCCAGAA
TCTATATCTAGATAGGGGCCCTATAGATCTATATCCTGGTTCCGTGTCGATGATAGTAGTTCTGC
GCCGAGAGCCGATAGCAGTGGCGATAGTCCCCGCCCCTCTATAGAATCTGGAGGGGAAGGAGATT
CGATTCCTCTCCTCAACTACCGATCTCTATATGGTTGGCGGTTGGCGCCCGGCCCTATACTATAT
AGATATGGGGGGGCCCCCAGATCTATATAGAGTAGAGGGCCCCCCCTCTCTATATCTGCTATATG
GGTTGGCCCCTCCCTATATAGATCTGATCTGGGGGGCCATCTCTC
Right flanking sequence: Indices 12330 -- 12829
GAGGGTTGGGTCTGAGTCACCCTATATGGATGGCGACCCGGCCCAACCCTCCCAACTTCTGATGC
TCAGTTCGGTGAATCGGCTTCCCGCCCCCATAGATATAGGCATCCGGTATGAACAGCGGACGGGA
CGATGTATCTATGTGTATGGGCGCGGTGATGTACTATATAGAGTAGGGCCGACTTCTGAAGGTTG
TGCCAAGGGCCATCAATCTCGGATCGCCAGCATCACGAGAAAGGTCTATCCCCATAGTCCATGCA
TGTTCGGTTCGGCCGGCTCTCCCGGCATACAGAAATGCCATTCCTCGCCCGCCCGCCCCCCCCCT
CTCTATCTATATGGGGATAAGGCTCCCCGCAGAAATGACCTGCCCTATACTCCATTCTAGATCGA
GTAAGTTGAGTAGTTGAGAACAATGGCCAGATACGAATAGATAGGGCATCCATCACCAGATAAGA
CAGAATAGGGGGGGGGAGGGGAGCCTGGAGTTGGTCACCTGCAGT
Found at i:13378 original size:10 final size:10
Alignment explanation
Indices: 13344--13371 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
13334 CCGGGCGCAT
13344 ATATAGATAG
1 ATATAGATAG
13354 ATATAGATAG
1 ATATAGATAG
13364 ATATAGAT
1 ATATAGAT
13372 CTATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (10 bp):
ATATAGATAG
Left flanking sequence: Indices 12844 -- 13343
TCTAATCTAATCTGAACTAGGAGGGGGGGTGCCATCAGCCAAGATATGGGATATGGTGGTCCGGA
GTTGGTCACCTGTAGTCGATCGAGCGACCAACCCACCTTGAATCAAGTCCCCTATCTCTATATGG
GCCATCATATATATAGGGGGCCTATATAGATAGGGGCGCCAACAGCCGGAGCGGTATTAATGATG
AGATGAGCAGATAGATGGGGTTGGCCCTATCTCTATATGGCGACTAGACTACAGATAGTCGCCCT
CGACTCTATATATCTAGTTGGGCCTCTATATAGATAGATGGCCCCGCCCATCTCAGAACTATGCG
CGGGCGGGCGGTCCCCCCCCTCCATATAGAGAATTCTCTAATTGTTCGCTATCGCTCACACCCCA
AGGGCTCCCATTTCCCATATAGTTAGATAGGGGTCTCATGTTACTTACGCAATATTCCCGATCTG
CTCTGATCCATCTGCATCCGTTACCATCCCTGCGCCCGGGCGCAT
Right flanking sequence: Indices 13372 -- 13871
CTATATATATATATCTATATCTATCTATATATTAGTCTAGTCCCCTTTGAATAAGAATAGTTGCA
TTGTACCGGAATTGAATTCCCCTGTCCGGGCGGCAATAGAGAATGCCTCCCCGGCCCGGGCGAGA
TAGATCTGCTTTTAATAGTTCATAGTTCCACCCGTTAGATCTGTCAGTAGTTTAGTTGCACCCCC
TTTCAATTTCATTTCTAGGGCGGCCCATCTCGCCGGTTATAGAATTTCTTTGTCAGTCACCGGCA
TCACCACCACAACTAAACTCTATATAGCCATCCGGCATCACGCATTGTCACCGGCATCACCCATT
CTCTATATAGATCATCCGGCCCCCCCTTCTCTCTATATCTTATCTGCGGACCCGTACGATCTTTA
CGATCTTCTGTCTCCATCTGTCTCCATCACGAACTATGGAGAGTCATCCGGCATCACTAGTGTGA
ATGATCAAATGGTCGGTGTTCCGGGAGATTAGATTCACATATCTA
Found at i:14059 original size:19 final size:20
Alignment explanation
Indices: 14030--14071 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
14020 AACCGATTCC
14030 GAGCGCGAAAGATTAGATTA
1 GAGCGCGAAAGATTAGATTA
14050 GAGC-CGAAAGATTAGATTA
1 GAGCGCGAAAGATTAGATTA
14069 GAG
1 GAG
14072 GAAGGAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.40, C:0.10, G:0.31, T:0.19
Consensus pattern (20 bp):
GAGCGCGAAAGATTAGATTA
Left flanking sequence: Indices 13530 -- 14029
CACCCGTTAGATCTGTCAGTAGTTTAGTTGCACCCCCTTTCAATTTCATTTCTAGGGCGGCCCAT
CTCGCCGGTTATAGAATTTCTTTGTCAGTCACCGGCATCACCACCACAACTAAACTCTATATAGC
CATCCGGCATCACGCATTGTCACCGGCATCACCCATTCTCTATATAGATCATCCGGCCCCCCCTT
CTCTCTATATCTTATCTGCGGACCCGTACGATCTTTACGATCTTCTGTCTCCATCTGTCTCCATC
ACGAACTATGGAGAGTCATCCGGCATCACTAGTGTGAATGATCAAATGGTCGGTGTTCCGGGAGA
TTAGATTCACATATCTAGATGGGGGCGGGGCGAAAGAATGAATTCATTATAGATCCGTGTCCCGG
ATTCTGAAACAAAGATTGATTCCGAGGAACGAAGATTAGATTCACATATCTAGATGGGGGCTCGG
GTTCCGGTTCGATTAGATCGGGCCGAAGCTTCGAGAACCGATTCC
Right flanking sequence: Indices 14072 -- 14571
GAAGGAAGATTCATTCGACATTCGGGTGATCGGCGTACCACATTTGCCCACTTGGGGTTCGGGTC
CTTACGACATACATTCGGGGTGAGCGTAGCCCTATCTATATATGGGCACCCCCCCCCTCTAGACT
CTATATATATGGGCGCCCTATCTAGAACTAGAACTCTCTATGGGGTGGGGGGGGAGTCTGGATAG
GGCTTCTCCTTTCGTTTGGGGTGATGGTGATTGATTACCACATTCTCTTGGCCGTTCTTACTTCT
CAATACCCCCCCATATATATATAGATATATATCTATATATAGATAGGGGGCGCCGGCACTCCGTT
GTAATCAGTCCACGCATGCGGCATGCCAATTCTGCCAATTCTGATATAGGGGGGGGGGCGGGGCG
GCATGCCAATTCTGCCAATTCTGATATAGGGGGGGGTGGTTGATCGCTTCACCTGATTCGCAGCG
TACCGTCCCGTTGCCATATCTATATAGAGCTCTCTATTCTATTCT
Found at i:16952 original size:15 final size:15
Alignment explanation
Indices: 16929--16983 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
16919 CGACATTACG
*
16929 GCAACCCGGATCGCT
1 GCAATCCGGATCGCT
*
16944 GCAATCCGGATCTCAT
1 GCAATCCGGATCGC-T
**
16960 -C-CGCCGGATCGCT
1 GCAATCCGGATCGCT
16973 GCAATCCGGAT
1 GCAATCCGGAT
16984 TTCATCCGCC
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
13 1 0.03
14 9 0.30
15 19 0.63
16 1 0.03
ACGTcount: A:0.20, C:0.36, G:0.25, T:0.18
Consensus pattern (15 bp):
GCAATCCGGATCGCT
Left flanking sequence: Indices 16429 -- 16928
GAGAGGTGGCCCCCCCATAGAACTATAGGCGGGCCTCTAGATATAGAAGGTGCTCTTCTGTTCCG
GCGATGCGAGGATAGATCGGAGAGGAGATAGGCCTGCTGTTACGCTTTACCTTACCAACTGTGAT
GAACTGAGCTAGCGTTCGATCATAGTTCGCTGGGATCGCCCCGGGCGGATCAGAGTTCGTCGCGA
TCAATCAAGGATCAAAGGATCATAGTTCATCGCTCCCTATGATCCGGATCAAGGATCATATAGAG
ATCTATAGGGGGCCCCTATCTATATATATATTAGGTCAAGGAAGGATCCCAGTTCGAGAGGGCCT
GGGGCCCGTCATATATGAGGTGGGGATCAGCCTGATCAACTGCCATACTGATCTCAACGGTTCAT
CGTCATGCCATATATAGATAGGGGCGCGGATCCCAATCTATAGGCTTATGGAAACGCCTCATCCG
GCGCGTCCGGATCCCGGATCTATATCACTCACTCACGACATTACG
Right flanking sequence: Indices 16984 -- 17483
TTCATCCGCCCTCGGGTGTTAGTCATTGACGACCAGTCGCTGCCCACCCCACCCTATATATAGAA
CTTATAACTGCGCAGATCTGGGGAGGGAGTATTCCGTGAAGGGGGTGGATCTGGTAATCAATCTG
CTGGTAGAATCTGGCCGACCGGGAGCCCCGGCTAATCATACTCGTATGTAGACCTGGCGATGACA
GTTCTATATATATAGTTGTGCTCTGCCATCCGGTTGCCCGGCATATAGAGAATAGAGGGGCAGCC
CTGATCTATAACTACCCAATGGAGGAGAGGAGGCGGCATCCATCCATATAGAATAGAGGGGCAGC
CCTGATCGACTATGCGGAATGCGGACCATTTGACAAGCGGGGAGCATATAGAGTATACCCAGAGA
AGGGAGATATGGGGTATCAACATTGGTATCGTATTGATCGATATCGGCATTGTATTGATAGATCG
TGCAGCCGGAATGTTGGTATTGCCCATCCCATCTCATCCCATCGG
Found at i:16976 original size:29 final size:29
Alignment explanation
Indices: 16934--16993 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
16924 TTACGGCAAC
16934 CCGGATCGCTGCAATCCGGATCTCATCCG
1 CCGGATCGCTGCAATCCGGATCTCATCCG
*
16963 CCGGATCGCTGCAATCCGGATTTCATCCG
1 CCGGATCGCTGCAATCCGGATCTCATCCG
16992 CC
1 CC
16994 CTCGGGTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.22
Consensus pattern (29 bp):
CCGGATCGCTGCAATCCGGATCTCATCCG
Left flanking sequence: Indices 16434 -- 16933
GTGGCCCCCCCATAGAACTATAGGCGGGCCTCTAGATATAGAAGGTGCTCTTCTGTTCCGGCGAT
GCGAGGATAGATCGGAGAGGAGATAGGCCTGCTGTTACGCTTTACCTTACCAACTGTGATGAACT
GAGCTAGCGTTCGATCATAGTTCGCTGGGATCGCCCCGGGCGGATCAGAGTTCGTCGCGATCAAT
CAAGGATCAAAGGATCATAGTTCATCGCTCCCTATGATCCGGATCAAGGATCATATAGAGATCTA
TAGGGGGCCCCTATCTATATATATATTAGGTCAAGGAAGGATCCCAGTTCGAGAGGGCCTGGGGC
CCGTCATATATGAGGTGGGGATCAGCCTGATCAACTGCCATACTGATCTCAACGGTTCATCGTCA
TGCCATATATAGATAGGGGCGCGGATCCCAATCTATAGGCTTATGGAAACGCCTCATCCGGCGCG
TCCGGATCCCGGATCTATATCACTCACTCACGACATTACGGCAAC
Right flanking sequence: Indices 16994 -- 17493
CTCGGGTGTTAGTCATTGACGACCAGTCGCTGCCCACCCCACCCTATATATAGAACTTATAACTG
CGCAGATCTGGGGAGGGAGTATTCCGTGAAGGGGGTGGATCTGGTAATCAATCTGCTGGTAGAAT
CTGGCCGACCGGGAGCCCCGGCTAATCATACTCGTATGTAGACCTGGCGATGACAGTTCTATATA
TATAGTTGTGCTCTGCCATCCGGTTGCCCGGCATATAGAGAATAGAGGGGCAGCCCTGATCTATA
ACTACCCAATGGAGGAGAGGAGGCGGCATCCATCCATATAGAATAGAGGGGCAGCCCTGATCGAC
TATGCGGAATGCGGACCATTTGACAAGCGGGGAGCATATAGAGTATACCCAGAGAAGGGAGATAT
GGGGTATCAACATTGGTATCGTATTGATCGATATCGGCATTGTATTGATAGATCGTGCAGCCGGA
ATGTTGGTATTGCCCATCCCATCTCATCCCATCGGGGGGTGGGTG
Found at i:18356 original size:53 final size:53
Alignment explanation
Indices: 18256--18357 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
18246 TGGCGGGTGA
* *
18256 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTTTCTATATAGAGATC
1 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTATATATATAGAGATC
*
18309 GATCCCCCCTCTCTCTCTATATAGATATTCAA-CCTCTATATAGTATAGA
1 GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTATATA-TATAGA
18358 ATCTATATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 7 0.16
53 38 0.84
ACGTcount: A:0.26, C:0.31, G:0.08, T:0.34
Consensus pattern (53 bp):
GATCCCCCCTCTCTCTCTATATAGATATTCAACCCCCTATATATATAGAGATC
Left flanking sequence: Indices 17756 -- 18255
GCCGGTCTAGTCACTGATGCAAGAGTCTAGTCGTATCACTGATATGATATGAGACTATCTATATC
TATGGATTAGGAAACTCCATAGAGTCTATCGTCTATAGGCGGTTCTACTCATAGAGGCACGAGGC
GCAACTCCCAACTCCCCTGTACTAGCTATGAATCTAGATATAGGGCCCACTCCGCATTACTAGCT
AGAGCCCGGAGTCCGACTCGGAAACGGGAATCCGAACCACCGGCGCCCGAGTCGACAGCCCCCTA
TATATATATATAGATATATATATTCATATTCGATTCGATTGTTGCCGACAGCCGGCCCCCCTCTC
TCTATATGGGGAGATGGGGGGCACTCGATTGCCAGATGGATATATAGGCCATCACCCCCTATCTA
GTTCTCTATATGGGGTGGGGGCACTCTCCCCTCCCCTCTATCCCCCGCCCATATACCATATATAT
AGAGAGGGCCCCCCCTCACCCAGATAGAATAGAGATGGCGGGTGA
Right flanking sequence: Indices 18358 -- 18857
ATCTATATATCTTCTAGATTCTATGGGCCTGCTCGCCTACACACTTCGGCAGGAATATATAGGTC
GGGTTGGCCCACCCGCCTTTCTCTCTACTTGCCGGGGGACCATAGGAAGCATGCTCCATATTTCT
ATATCTAGGGCCACACAACCAGCCCGCTACCCGAACCCCTATATGTATAGATATAGGCCTATGCC
CATACCCGGCTATCCAGTCCACATAGATAGGGGGCGGCCCGCCCCTATCTATATAGATTTAGCCT
ATAGAGTATAGATTATCTCCCGTTGCCATAGAATCTATACCCATGATAGGGGGTTGCCATGCTTA
TGTGAATCATCGGGTCGGGCCTATATCTAGAGGATTCCCTCTATCTATTTTAGATGGGGCCATCT
CTCTATACTAGATTGGGTCGGGATATCTAGAGGGCCTATTATGCCTCTTGTTGTATCACGTAGAT
AATGGATGGATGGATGGATGCATCCATGGCCCCCACCCCCAGCCC
Found at i:21907 original size:27 final size:27
Alignment explanation
Indices: 21875--21927 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
21865 AGGTATCACT
*
21875 AGTCAATGGTTCTACTGTTCCCCCCAG
1 AGTCAATGGTTCTACCGTTCCCCCCAG
21902 AGTCAATGGTTCTACCGTTCCCCCCA
1 AGTCAATGGTTCTACCGTTCCCCCCA
21928 AGATTCGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (27 bp):
AGTCAATGGTTCTACCGTTCCCCCCAG
Left flanking sequence: Indices 21375 -- 21874
TCCGGCAAATCAAATTGAGTCAGGTCACTTGTCCAGCCCCTTATACCCCCCCTTTCTCTATATGG
GAGAGAGGGGGGCGCCCTATCTATATATGGCATCCATCTATATGACTGAGATCAGATCAAAGCCC
TATAGTTCTATATGGCCCAACCTAAGGACATTGGCCCCCCCCATACATAGAGATAGAGAGGGGGT
CGAATCAGATATCAGTCATCAGTCGTATCACGTATATAATGGAATGGATGGCCCTCGGCCCCCGG
CCACCGGCGCGCATAGAAATAGAACTGCCGCCCCCCCACCCCTATCTATAGATTCTAGATTCTAG
ATATGGCGATAGGACGAGCCAGATAGAACAGATATCTCCCGACGGCCTACTTACTATATACTATA
TATAGCTGGGAGAGGGGGAGGACAGTTCTAATCTATGGGGCAGCCGCCCGATTGGGGAGCGCATG
CAGTCGGGGTTCAGCAGGTTCAATGCTGCGGACAGAGGTATCACT
Right flanking sequence: Indices 21928 -- 22427
AGATTCGAAGTTGGGGTGACTGGAGCGAAAGAATATCGTATGAATCTTTCCGTATCATACGAATT
TTGCATTGAAAACTCCTCCGGGAGAAGCTAGAATTCGTTCCGTTTGGATATCGATTGGTCCCAGT
TCGACATGGTTTACGTGCCATTGGTTCCCGGAGGAGTCAATATCTCCATCGGCTAAACCCCATCT
GACCCTGCCTTTGGACCCGTATCCTGTTCGTACACGATCGACGGAGGCCTCTTCGACATGTGTTA
CTACGTCTCCAGTAGCACGCTCCTACTCCGTCTTTCCCTCCATGAGTTATCAAATTTGGTGCCCT
TCGATCCCCAGTTGCTATGAAGGACGAAGGGCGAGATACAATCAATTCTTTCACCCAAGTGGTTT
TTGCTTCTCCCCGTTCTTGTTCCTAACTCTTACCCGGGCAGTTCCCAATGTTCGGCACTTCCCAT
GCTTCGCGGGTACAACATCAACTAATTTGCTCATGATCAAGTTAC
Found at i:24239 original size:20 final size:20
Alignment explanation
Indices: 24214--24260 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
24204 CCCCCATCTA
*
24214 TATCTCTATCTGAATGAGAC
1 TATCTCTATCTGAATGAAAC
24234 TATCTCTATCTGAATGAAAC
1 TATCTCTATCTGAATGAAAC
*
24254 TCTCTCT
1 TATCTCT
24261 CTCTATATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (20 bp):
TATCTCTATCTGAATGAAAC
Left flanking sequence: Indices 23714 -- 24213
GGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTCATACTAATGCTAGGACTTG
CCGCAGAAAATCGTAGCCGGTCGAGCGCATGAATGCGTTCCGATCAAGCAATGAAAGGAATGATT
GCGATCCATCATTCGCAAACACTTCACTCATGAGCGAGCGCGCCAATCGGGTCTAATCCCCGCAG
AATCGTTTTTCTTAGGCGAGCACACCATCCCCTCCCCCCCCCCCTCCCCCCCATATAGATCTGAT
CTAGAGGGTCCTATCGCCATATGGATATTTCTATAGGGTGCCCCATCTATTCTATATATAGGCCG
TTGGCCAGGGGGACTCGGCCTCCTCGCGTCGGCCGAGTCCCCCGGATAGACTCCTCGATCTATCG
CCTATAGAGTTCTAGGGGGTGCCCCATAGATAGGGGCCCGCCGGGGCAGGAGAGTGCCTCCTCGG
GGGAGTAAAGGCCCTTGATCTCCTCCCCCCCCCCCCCCCCATCTA
Right flanking sequence: Indices 24261 -- 24760
CTCTATATCTGAGCTCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTATCTCTCTCTCACTCTTC
AGTCTCTTCTCTCTCTATCTATATCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCTCTC
TCTCACTCTGAAGTCTCTTCTCTATCTATCTCTATATCTATCTCTATCTGAATGAGACTATCTCT
ATAGTAGGCCATCTCGTCGGGGGAGTTCCTCGACCCCAACCCCCCCCCCCCCAACCCCATCCAAT
CTAGAGAGACCTGGGATCTGGGCGGGCGGTCCCCCTATGACGATATGGGTTCGCCGGGGGGGCTC
ACCCCGACTAGACTAGACTAGACTAGACTCTATAATATAGCCTAGCCGCCCTACGTCGGGGGAGG
CCCGAATAGATAGGGGCGGGGGAGGCCCCCTTAGATCTTATATATCTTATCTATCTGGGCGGCCG
GGGCGCACCATATATAGATGTCGGACGAGTGGACTGACTCTCTAT
Found at i:24306 original size:2 final size:2
Alignment explanation
Indices: 24294--24399 Score: 74
Period size: 2 Copynumber: 54.5 Consensus size: 2
24284 CACTCTGAAG
* * **
24294 TC TC T- TC TC TC TC TA TC TC TC TC TC AC TC T- TC AG TC TC T-
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * *
24333 TC TC TC TC TA TC TA TA TC TG TA TC TC TC TC TC TC TA TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * *
24375 TC TA TA TC TC TC TC TC TC TC AC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
24400 GAAGTCTCTT
Statistics
Matches: 80, Mismatches: 21, Indels: 6
0.75 0.20 0.06
Matches are distributed among these distances:
1 3 0.04
2 77 0.96
ACGTcount: A:0.10, C:0.39, G:0.02, T:0.49
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 23794 -- 24293
GCCGGTCGAGCGCATGAATGCGTTCCGATCAAGCAATGAAAGGAATGATTGCGATCCATCATTCG
CAAACACTTCACTCATGAGCGAGCGCGCCAATCGGGTCTAATCCCCGCAGAATCGTTTTTCTTAG
GCGAGCACACCATCCCCTCCCCCCCCCCCTCCCCCCCATATAGATCTGATCTAGAGGGTCCTATC
GCCATATGGATATTTCTATAGGGTGCCCCATCTATTCTATATATAGGCCGTTGGCCAGGGGGACT
CGGCCTCCTCGCGTCGGCCGAGTCCCCCGGATAGACTCCTCGATCTATCGCCTATAGAGTTCTAG
GGGGTGCCCCATAGATAGGGGCCCGCCGGGGCAGGAGAGTGCCTCCTCGGGGGAGTAAAGGCCCT
TGATCTCCTCCCCCCCCCCCCCCCCATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAAT
GAAACTCTCTCTCTCTATATCTGAGCTCTCTCTCTCACTCTGAAG
Right flanking sequence: Indices 24400 -- 24899
GAAGTCTCTTCTCTATCTATCTCTATATCTATCTCTATCTGAATGAGACTATCTCTATAGTAGGC
CATCTCGTCGGGGGAGTTCCTCGACCCCAACCCCCCCCCCCCCAACCCCATCCAATCTAGAGAGA
CCTGGGATCTGGGCGGGCGGTCCCCCTATGACGATATGGGTTCGCCGGGGGGGCTCACCCCGACT
AGACTAGACTAGACTAGACTCTATAATATAGCCTAGCCGCCCTACGTCGGGGGAGGCCCGAATAG
ATAGGGGCGGGGGAGGCCCCCTTAGATCTTATATATCTTATCTATCTGGGCGGCCGGGGCGCACC
ATATATAGATGTCGGACGAGTGGACTGACTCTCTATAGTCAGGAGGCCGCCCTATCCTGAACTAT
CTGGCTCGTCCGACGCCTATCTATATATGGTGCGCCCCGGCCTCCGCCCTCGGCGCATGCCTATC
TATATAGGGATAGGGGCCGCCGACCCCCCCCTATCTAATCTATAT
Found at i:24313 original size:34 final size:34
Alignment explanation
Indices: 24275--24345 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
24265 ATATCTGAGC
24275 TCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTA
1 TCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTA
**
24309 TCTCTCTCTCACTCTTCAGTCTCTTCTCTCTCTA
1 TCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTA
24343 TCT
1 TCT
24346 ATATCTGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.10, C:0.39, G:0.04, T:0.46
Consensus pattern (34 bp):
TCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTA
Left flanking sequence: Indices 23775 -- 24274
CTTGCCGCAGAAAATCGTAGCCGGTCGAGCGCATGAATGCGTTCCGATCAAGCAATGAAAGGAAT
GATTGCGATCCATCATTCGCAAACACTTCACTCATGAGCGAGCGCGCCAATCGGGTCTAATCCCC
GCAGAATCGTTTTTCTTAGGCGAGCACACCATCCCCTCCCCCCCCCCCTCCCCCCCATATAGATC
TGATCTAGAGGGTCCTATCGCCATATGGATATTTCTATAGGGTGCCCCATCTATTCTATATATAG
GCCGTTGGCCAGGGGGACTCGGCCTCCTCGCGTCGGCCGAGTCCCCCGGATAGACTCCTCGATCT
ATCGCCTATAGAGTTCTAGGGGGTGCCCCATAGATAGGGGCCCGCCGGGGCAGGAGAGTGCCTCC
TCGGGGGAGTAAAGGCCCTTGATCTCCTCCCCCCCCCCCCCCCCATCTATATCTCTATCTGAATG
AGACTATCTCTATCTGAATGAAACTCTCTCTCTCTATATCTGAGC
Right flanking sequence: Indices 24346 -- 24845
ATATCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTCTCACTCTGAAGTCTCTTC
TCTATCTATCTCTATATCTATCTCTATCTGAATGAGACTATCTCTATAGTAGGCCATCTCGTCGG
GGGAGTTCCTCGACCCCAACCCCCCCCCCCCCAACCCCATCCAATCTAGAGAGACCTGGGATCTG
GGCGGGCGGTCCCCCTATGACGATATGGGTTCGCCGGGGGGGCTCACCCCGACTAGACTAGACTA
GACTAGACTCTATAATATAGCCTAGCCGCCCTACGTCGGGGGAGGCCCGAATAGATAGGGGCGGG
GGAGGCCCCCTTAGATCTTATATATCTTATCTATCTGGGCGGCCGGGGCGCACCATATATAGATG
TCGGACGAGTGGACTGACTCTCTATAGTCAGGAGGCCGCCCTATCCTGAACTATCTGGCTCGTCC
GACGCCTATCTATATATGGTGCGCCCCGGCCTCCGCCCTCGGCGC
Found at i:24338 original size:26 final size:25
Alignment explanation
Indices: 24309--24399 Score: 82
Period size: 26 Copynumber: 3.6 Consensus size: 25
24299 TCTCTCTCTA
*
24309 TCTCTCTCTCACTCTTCAGTCTCT-
1 TCTCTCTCTCACTCTTCAGTATCTC
* *
24333 TCTCTCTCT-ATCTATATCTGTATCTC
1 TCTCTCTCTCA-CTCT-TCAGTATCTC
24359 TCTCTCTCT-ATCTCTCTCTA-TATCTC
1 TCTCTCTCTCA-CTCT-TC-AGTATCTC
24385 TCTCTCTCTCACTCT
1 TCTCTCTCTCACTCT
24400 GAAGTCTCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
23 1 0.02
24 12 0.21
25 7 0.12
26 35 0.62
27 1 0.02
ACGTcount: A:0.11, C:0.38, G:0.02, T:0.48
Consensus pattern (25 bp):
TCTCTCTCTCACTCTTCAGTATCTC
Left flanking sequence: Indices 23809 -- 24308
GAATGCGTTCCGATCAAGCAATGAAAGGAATGATTGCGATCCATCATTCGCAAACACTTCACTCA
TGAGCGAGCGCGCCAATCGGGTCTAATCCCCGCAGAATCGTTTTTCTTAGGCGAGCACACCATCC
CCTCCCCCCCCCCCTCCCCCCCATATAGATCTGATCTAGAGGGTCCTATCGCCATATGGATATTT
CTATAGGGTGCCCCATCTATTCTATATATAGGCCGTTGGCCAGGGGGACTCGGCCTCCTCGCGTC
GGCCGAGTCCCCCGGATAGACTCCTCGATCTATCGCCTATAGAGTTCTAGGGGGTGCCCCATAGA
TAGGGGCCCGCCGGGGCAGGAGAGTGCCTCCTCGGGGGAGTAAAGGCCCTTGATCTCCTCCCCCC
CCCCCCCCCCATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAAACTCTCTCTCTC
TATATCTGAGCTCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTA
Right flanking sequence: Indices 24400 -- 24899
GAAGTCTCTTCTCTATCTATCTCTATATCTATCTCTATCTGAATGAGACTATCTCTATAGTAGGC
CATCTCGTCGGGGGAGTTCCTCGACCCCAACCCCCCCCCCCCCAACCCCATCCAATCTAGAGAGA
CCTGGGATCTGGGCGGGCGGTCCCCCTATGACGATATGGGTTCGCCGGGGGGGCTCACCCCGACT
AGACTAGACTAGACTAGACTCTATAATATAGCCTAGCCGCCCTACGTCGGGGGAGGCCCGAATAG
ATAGGGGCGGGGGAGGCCCCCTTAGATCTTATATATCTTATCTATCTGGGCGGCCGGGGCGCACC
ATATATAGATGTCGGACGAGTGGACTGACTCTCTATAGTCAGGAGGCCGCCCTATCCTGAACTAT
CTGGCTCGTCCGACGCCTATCTATATATGGTGCGCCCCGGCCTCCGCCCTCGGCGCATGCCTATC
TATATAGGGATAGGGGCCGCCGACCCCCCCCTATCTAATCTATAT
Found at i:24412 original size:26 final size:24
Alignment explanation
Indices: 24309--24413 Score: 70
Period size: 26 Copynumber: 4.1 Consensus size: 24
24299 TCTCTCTCTA
*
24309 TCTCTCTCTCACTCTTCAGTCTCTTC
1 TCTCTCTCTCACTC-TGA-TCTCTTC
* *
24335 TCTCTCTATCTATATCTGTATCTCTCTC
1 TCTCTCTCTC-A-CTCTG-ATCTCT-TC
* * *
24363 TCTCTATCTCTCTCT-ATATC-TC
1 TCTCTCTCTCACTCTGATCTCTTC
24385 TCTCTCTCTCACTCTGAAGTCTCTTC
1 TCTCTCTCTCACTCTG-A-TCTCTTC
24411 TCT
1 TCT
24414 ATCTATCTCT
Statistics
Matches: 60, Mismatches: 11, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
22 15 0.25
24 5 0.08
25 3 0.05
26 17 0.28
27 7 0.12
28 13 0.22
ACGTcount: A:0.11, C:0.37, G:0.04, T:0.48
Consensus pattern (24 bp):
TCTCTCTCTCACTCTGATCTCTTC
Left flanking sequence: Indices 23809 -- 24308
GAATGCGTTCCGATCAAGCAATGAAAGGAATGATTGCGATCCATCATTCGCAAACACTTCACTCA
TGAGCGAGCGCGCCAATCGGGTCTAATCCCCGCAGAATCGTTTTTCTTAGGCGAGCACACCATCC
CCTCCCCCCCCCCCTCCCCCCCATATAGATCTGATCTAGAGGGTCCTATCGCCATATGGATATTT
CTATAGGGTGCCCCATCTATTCTATATATAGGCCGTTGGCCAGGGGGACTCGGCCTCCTCGCGTC
GGCCGAGTCCCCCGGATAGACTCCTCGATCTATCGCCTATAGAGTTCTAGGGGGTGCCCCATAGA
TAGGGGCCCGCCGGGGCAGGAGAGTGCCTCCTCGGGGGAGTAAAGGCCCTTGATCTCCTCCCCCC
CCCCCCCCCCATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAAACTCTCTCTCTC
TATATCTGAGCTCTCTCTCTCACTCTGAAGTCTCTTCTCTCTCTA
Right flanking sequence: Indices 24414 -- 24913
ATCTATCTCTATATCTATCTCTATCTGAATGAGACTATCTCTATAGTAGGCCATCTCGTCGGGGG
AGTTCCTCGACCCCAACCCCCCCCCCCCCAACCCCATCCAATCTAGAGAGACCTGGGATCTGGGC
GGGCGGTCCCCCTATGACGATATGGGTTCGCCGGGGGGGCTCACCCCGACTAGACTAGACTAGAC
TAGACTCTATAATATAGCCTAGCCGCCCTACGTCGGGGGAGGCCCGAATAGATAGGGGCGGGGGA
GGCCCCCTTAGATCTTATATATCTTATCTATCTGGGCGGCCGGGGCGCACCATATATAGATGTCG
GACGAGTGGACTGACTCTCTATAGTCAGGAGGCCGCCCTATCCTGAACTATCTGGCTCGTCCGAC
GCCTATCTATATATGGTGCGCCCCGGCCTCCGCCCTCGGCGCATGCCTATCTATATAGGGATAGG
GGCCGCCGACCCCCCCCTATCTAATCTATATATGGGCCATAAGAG
Found at i:24457 original size:6 final size:6
Alignment explanation
Indices: 24337--24439 Score: 54
Period size: 6 Copynumber: 17.5 Consensus size: 6
24327 GTCTCTTCTC
* * * * * * * *
24337 TCTCTA TCTATA TCTGTA TCTCTC TCTCTC TATCTC TCTCTA TATCTC
1 TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA
* *
24385 TCTCTC TCTC-A -CTCTGAA GTCTCT- TCTCTA --TCTA TCTCTA TATCTA
1 TCTCTA TCTCTA TCTCT--A -TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA
24431 TCTCTA TCT
1 TCTCTA TCT
24440 GAATGAGACT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
4 7 0.09
5 5 0.07
6 59 0.78
7 1 0.01
9 4 0.05
ACGTcount: A:0.16, C:0.33, G:0.03, T:0.49
Consensus pattern (6 bp):
TCTCTA
Left flanking sequence: Indices 23837 -- 24336
AATGATTGCGATCCATCATTCGCAAACACTTCACTCATGAGCGAGCGCGCCAATCGGGTCTAATC
CCCGCAGAATCGTTTTTCTTAGGCGAGCACACCATCCCCTCCCCCCCCCCCTCCCCCCCATATAG
ATCTGATCTAGAGGGTCCTATCGCCATATGGATATTTCTATAGGGTGCCCCATCTATTCTATATA
TAGGCCGTTGGCCAGGGGGACTCGGCCTCCTCGCGTCGGCCGAGTCCCCCGGATAGACTCCTCGA
TCTATCGCCTATAGAGTTCTAGGGGGTGCCCCATAGATAGGGGCCCGCCGGGGCAGGAGAGTGCC
TCCTCGGGGGAGTAAAGGCCCTTGATCTCCTCCCCCCCCCCCCCCCCATCTATATCTCTATCTGA
ATGAGACTATCTCTATCTGAATGAAACTCTCTCTCTCTATATCTGAGCTCTCTCTCTCACTCTGA
AGTCTCTTCTCTCTCTATCTCTCTCTCACTCTTCAGTCTCTTCTC
Right flanking sequence: Indices 24440 -- 24939
GAATGAGACTATCTCTATAGTAGGCCATCTCGTCGGGGGAGTTCCTCGACCCCAACCCCCCCCCC
CCCAACCCCATCCAATCTAGAGAGACCTGGGATCTGGGCGGGCGGTCCCCCTATGACGATATGGG
TTCGCCGGGGGGGCTCACCCCGACTAGACTAGACTAGACTAGACTCTATAATATAGCCTAGCCGC
CCTACGTCGGGGGAGGCCCGAATAGATAGGGGCGGGGGAGGCCCCCTTAGATCTTATATATCTTA
TCTATCTGGGCGGCCGGGGCGCACCATATATAGATGTCGGACGAGTGGACTGACTCTCTATAGTC
AGGAGGCCGCCCTATCCTGAACTATCTGGCTCGTCCGACGCCTATCTATATATGGTGCGCCCCGG
CCTCCGCCCTCGGCGCATGCCTATCTATATAGGGATAGGGGCCGCCGACCCCCCCCTATCTAATC
TATATATGGGCCATAAGAGCTAAGAGGACCTAAAGAAGAGGACCC
Found at i:25134 original size:17 final size:17
Alignment explanation
Indices: 25112--25147 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
25102 GGCAATAGAG
25112 GGAGATCAA-GTCGAGAA
1 GGAGATCAATG-CGAGAA
25129 GGAGATCAATGCGAGAA
1 GGAGATCAATGCGAGAA
25146 GG
1 GG
25148 GGGGTCGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.39, C:0.11, G:0.39, T:0.11
Consensus pattern (17 bp):
GGAGATCAATGCGAGAA
Left flanking sequence: Indices 24612 -- 25111
ACTCTATAATATAGCCTAGCCGCCCTACGTCGGGGGAGGCCCGAATAGATAGGGGCGGGGGAGGC
CCCCTTAGATCTTATATATCTTATCTATCTGGGCGGCCGGGGCGCACCATATATAGATGTCGGAC
GAGTGGACTGACTCTCTATAGTCAGGAGGCCGCCCTATCCTGAACTATCTGGCTCGTCCGACGCC
TATCTATATATGGTGCGCCCCGGCCTCCGCCCTCGGCGCATGCCTATCTATATAGGGATAGGGGC
CGCCGACCCCCCCCTATCTAATCTATATATGGGCCATAAGAGCTAAGAGGACCTAAAGAAGAGGA
CCCCCTATCTAATCTATATATGATAAGAGCTAAGAGGAGCCCTATCTAGAACTCTAATATAAGAT
AGGAAGGGGTGGGGGCCCTCAATTTTATCCTTCTCCTAGCGGCCAAGGAGATCAAGTCGAGTTTT
TTTGTTTTCGGGCGGAGGGCCGAAGTTCGGCAAGCGGCAATAGAG
Right flanking sequence: Indices 25148 -- 25647
GGGGTCGAGGAGGATGTAGATAGATAGATAGATAGGGGCGTTGAACCCGTTAGTCACTTATGACA
ATAGTAGTAAAGGGAAAGGGCCCCCCCTATCCATATCTGCTCAGAGAAAAGCTAAGCTCATTATG
GTCCCATTCTCCCCGGACCAGCTCATTTCATCATGGATGGGTATTGATCTGGCCCTTATGGATCT
ATTCTCCCGTTACTCCCCGTTACTCCTATTCATGGGCATGGGGAGTTGTTGATTCATGGGACCCA
TGAATCCCTTATGGATCTGGGAGTATTGATCTGGCTGGGATGGATTGATCGCCCGGGTGTACGTA
TGGATCTGGCTGGGATGGATTGATCTGGTTCCCGTTCAATCGCCCTAGGCCTCCCTTTTCCCGTT
CTTCATAGCAAGGGGCAGCCGTGCTAGCCCAAACACCCCGTAACCACCGGCCTACCGGGACAATC
TCCTTCTCCTCTATCTCCTAGTCCTACCACCCGCAACTCCTTCTT
Found at i:25456 original size:19 final size:19
Alignment explanation
Indices: 25432--25500 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
25422 ATCTGGGAGT
25432 ATTGATCTGGCTGGGATGG
1 ATTGATCTGGCTGGGATGG
* *
25451 ATTGATC-GCCCGGG-TGTACG
1 ATTGATCTGGCTGGGATG---G
*
25471 TATGGATCTGGCTGGGATGG
1 -ATTGATCTGGCTGGGATGG
25491 ATTGATCTGG
1 ATTGATCTGG
25501 TTCCCGTTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
17 2 0.05
18 5 0.13
19 16 0.42
20 2 0.05
21 6 0.16
22 5 0.13
23 2 0.05
ACGTcount: A:0.16, C:0.14, G:0.39, T:0.30
Consensus pattern (19 bp):
ATTGATCTGGCTGGGATGG
Left flanking sequence: Indices 24932 -- 25431
GAGGACCCCCTATCTAATCTATATATGATAAGAGCTAAGAGGAGCCCTATCTAGAACTCTAATAT
AAGATAGGAAGGGGTGGGGGCCCTCAATTTTATCCTTCTCCTAGCGGCCAAGGAGATCAAGTCGA
GTTTTTTTGTTTTCGGGCGGAGGGCCGAAGTTCGGCAAGCGGCAATAGAGGGAGATCAAGTCGAG
AAGGAGATCAATGCGAGAAGGGGGGTCGAGGAGGATGTAGATAGATAGATAGATAGGGGCGTTGA
ACCCGTTAGTCACTTATGACAATAGTAGTAAAGGGAAAGGGCCCCCCCTATCCATATCTGCTCAG
AGAAAAGCTAAGCTCATTATGGTCCCATTCTCCCCGGACCAGCTCATTTCATCATGGATGGGTAT
TGATCTGGCCCTTATGGATCTATTCTCCCGTTACTCCCCGTTACTCCTATTCATGGGCATGGGGA
GTTGTTGATTCATGGGACCCATGAATCCCTTATGGATCTGGGAGT
Right flanking sequence: Indices 25501 -- 26000
TTCCCGTTCAATCGCCCTAGGCCTCCCTTTTCCCGTTCTTCATAGCAAGGGGCAGCCGTGCTAGC
CCAAACACCCCGTAACCACCGGCCTACCGGGACAATCTCCTTCTCCTCTATCTCCTAGTCCTACC
ACCCGCAACTCCTTCTTTCTGCAAACGAAAGGCGGAACCGGAAAAAGGGAGAGGACAGAGCCCCC
ATAGCATAGAGTCGCACGCCATGGCATACGCAATTCCATAGGGTAGGGTTACATAGCCGCACAAG
AGGAAGTGAACCCAGGCCCCTATCTATTCTATTCTCTATCGGGAGTAAGTGAATCCATTGATAAT
ATCATTCATTCCCTTCTTTCCACGCCGCCGCTCCTTCTCCTTTTTCCGCCCCGCCCGGGTTCGTG
AATAACCGCTGAGAATCATCGTCATAGTTCATCAGCTCGGAATCATAGTTCATCATAGTTCGTGG
AATCATCTACAGAAGGGAGAGGCGAGTGGGATGGGATCATGATCA
Found at i:26393 original size:36 final size:36
Alignment explanation
Indices: 26353--26435 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
26343 TCTCTCTCAA
26353 TCCGGTCCC-AACTCCAACCCGGCCTAAACCTAACTG
1 TCCGGTCCCGAACT-CAACCCGGCCTAAACCTAACTG
** * *
26389 TCCGGTCCCGAACTCAACCCGTTCTAGACCTATCTG
1 TCCGGTCCCGAACTCAACCCGGCCTAAACCTAACTG
26425 TCCGGTCCCGA
1 TCCGGTCCCGA
26436 GCCTGCCAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 38 0.90
37 4 0.10
ACGTcount: A:0.20, C:0.42, G:0.17, T:0.20
Consensus pattern (36 bp):
TCCGGTCCCGAACTCAACCCGGCCTAAACCTAACTG
Left flanking sequence: Indices 25853 -- 26352
CCGCTCCTTCTCCTTTTTCCGCCCCGCCCGGGTTCGTGAATAACCGCTGAGAATCATCGTCATAG
TTCATCAGCTCGGAATCATAGTTCATCATAGTTCGTGGAATCATCTACAGAAGGGAGAGGCGAGT
GGGATGGGATCATGATCAGAGGCAGACCAATTACCAACCATACCGATTCCACGGCCCTCCCCCTA
CTATTTATCCGATCGATTCCCAGCTCAGAAAACAAAGCCCTCCCAGATAGGTCTATAGGGCGTAG
CGGTGAATCATGCATGGCATTGGATGCTCTGGTTGGGTGGGTTAATCGGTTCATGGATGGGGCTA
GGCACGAATGAGATAACCCGGGTCGACCGCTCTCGGAGTGGTATAGTATCCAATGGCCGGTAGTA
ATAGTAATATACGTTTGGCCGGTCCCGAACCTATCCGTCCGGTCCCGAACCTGCCCTGCCTTATA
TACATAATATCTGTTTGGCCGGTCCCGAACCTAACTCTCTCTCAA
Right flanking sequence: Indices 26436 -- 26935
GCCTGCCAGATACTAGAATCGGGGCTCTTTCTCTATATGGGCCGGTCCCGAACCCAGATGGCGGT
TATAGTTCTGGTTCCAACCCAGCCAACTATGGATATACTATCTGGTCGTCCCCCATCTCGCCATC
TAGCCATCTAGATAGAGAGGGGAGGGGAGGGGGGATGCCCTATCTGGTCTAACCTGGCCCAGACC
TATCTGGTTCAACCCGGCCCCTTTCGGTATTTAGACCTATCTGTCCGGTTCCAACCCTAACCCGG
CCCCTTTCGGCCCGGTCCCAGACGTTCCCAGACCTAACTGTCCGGGTCCTGTCGGGGCTATCTGT
CCGATTCTGGCGACTATCTATATGCTTGTCCAACCGAGCCATATAGATAGTCCATATCTCTATCT
GTATCTCTCTCTCTCTATCTCTCGATCTATCTATATCTCTCTCTCTCTCTATCTATATCTATATC
TGAATGAGACTATCTCTCTCTCTCTCTATATCTCTCTCAGATATA
Found at i:26868 original size:22 final size:22
Alignment explanation
Indices: 26843--26885 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26833 TCTCTCTCTA
26843 TCTCTCGATCTATCTATATCTC
1 TCTCTCGATCTATCTATATCTC
**
26865 TCTCTCTCTCTATCTATATCT
1 TCTCTCGATCTATCTATATCT
26886 ATATCTGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.33, G:0.02, T:0.49
Consensus pattern (22 bp):
TCTCTCGATCTATCTATATCTC
Left flanking sequence: Indices 26343 -- 26842
TCTCTCTCAATCCGGTCCCAACTCCAACCCGGCCTAAACCTAACTGTCCGGTCCCGAACTCAACC
CGTTCTAGACCTATCTGTCCGGTCCCGAGCCTGCCAGATACTAGAATCGGGGCTCTTTCTCTATA
TGGGCCGGTCCCGAACCCAGATGGCGGTTATAGTTCTGGTTCCAACCCAGCCAACTATGGATATA
CTATCTGGTCGTCCCCCATCTCGCCATCTAGCCATCTAGATAGAGAGGGGAGGGGAGGGGGGATG
CCCTATCTGGTCTAACCTGGCCCAGACCTATCTGGTTCAACCCGGCCCCTTTCGGTATTTAGACC
TATCTGTCCGGTTCCAACCCTAACCCGGCCCCTTTCGGCCCGGTCCCAGACGTTCCCAGACCTAA
CTGTCCGGGTCCTGTCGGGGCTATCTGTCCGATTCTGGCGACTATCTATATGCTTGTCCAACCGA
GCCATATAGATAGTCCATATCTCTATCTGTATCTCTCTCTCTCTA
Right flanking sequence: Indices 26886 -- 27385
ATATCTGAATGAGACTATCTCTCTCTCTCTCTATATCTCTCTCAGATATATATCTCTCTCTCTAT
CTATATCTGAATGAGAATATCTCTCTCTATATCTCTCTCTCTATCTGAAGTCTCTCTCTCTATCT
CTATCTCTCTCTATATCTATATCTCTATCTGTATCTCTCTCTCTCTATCTCTCTCTATATCTCAC
TCTTCACTCTATATCTATATCTATATACAGGCGGGCCGACCGGGTAAGAAATAGTTGCCCCACGC
TGCCTCATCTATTGTATTAGAGCCTCGAGAGTTGGGTCGGATATAGAGAGAGGGGCGGGGAAGGG
GAGGTTCTTTAGATCGGGGGTCGGTCAGGCACCTTCATCAGCCCAACCCCCCCAGATGGAATAAT
CCCTGCCCCTCCCCTGAACTATCTTCTCTATATGGCTCTCGGGGATAGAGAATCGACTGCCCAAC
TCCAACCCCGTGAGGCCGACAACCCCGTGGGCCCGAGGCCTTGCT
Found at i:27006 original size:2 final size:2
Alignment explanation
Indices: 27001--27071 Score: 52
Period size: 2 Copynumber: 35.5 Consensus size: 2
26991 CTATCTGAAG
* * * * * * *
27001 TC TC TC TC TC TA TC TC TA TC TC TC TC TA TA TC TA TA TC TC TA
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * *
27043 TC TG TA TC TC TC TC TC TC TA TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
27072 ATATCTCACT
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.13, C:0.35, G:0.01, T:0.51
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 26501 -- 27000
TATAGTTCTGGTTCCAACCCAGCCAACTATGGATATACTATCTGGTCGTCCCCCATCTCGCCATC
TAGCCATCTAGATAGAGAGGGGAGGGGAGGGGGGATGCCCTATCTGGTCTAACCTGGCCCAGACC
TATCTGGTTCAACCCGGCCCCTTTCGGTATTTAGACCTATCTGTCCGGTTCCAACCCTAACCCGG
CCCCTTTCGGCCCGGTCCCAGACGTTCCCAGACCTAACTGTCCGGGTCCTGTCGGGGCTATCTGT
CCGATTCTGGCGACTATCTATATGCTTGTCCAACCGAGCCATATAGATAGTCCATATCTCTATCT
GTATCTCTCTCTCTCTATCTCTCGATCTATCTATATCTCTCTCTCTCTCTATCTATATCTATATC
TGAATGAGACTATCTCTCTCTCTCTCTATATCTCTCTCAGATATATATCTCTCTCTCTATCTATA
TCTGAATGAGAATATCTCTCTCTATATCTCTCTCTCTATCTGAAG
Right flanking sequence: Indices 27072 -- 27571
ATATCTCACTCTTCACTCTATATCTATATCTATATACAGGCGGGCCGACCGGGTAAGAAATAGTT
GCCCCACGCTGCCTCATCTATTGTATTAGAGCCTCGAGAGTTGGGTCGGATATAGAGAGAGGGGC
GGGGAAGGGGAGGTTCTTTAGATCGGGGGTCGGTCAGGCACCTTCATCAGCCCAACCCCCCCAGA
TGGAATAATCCCTGCCCCTCCCCTGAACTATCTTCTCTATATGGCTCTCGGGGATAGAGAATCGA
CTGCCCAACTCCAACCCCGTGAGGCCGACAACCCCGTGGGCCCGAGGCCTTGCTCCCCCATACCG
GATATCGAATATTCAACTGCCCAACCCCATCTACCGAAATATATCTGAGAATACTCCATCCCCGC
GGCCCTCTATACTATATATATCTGTCGGGGGCCTTATATGATATGAACCTTTCGTTCGGAATACT
TGTCTAGCTATGCCGACTATGCCATGAGGAAGACGATGTCTCGTC
Found at i:27010 original size:6 final size:6
Alignment explanation
Indices: 26968--27078 Score: 78
Period size: 6 Copynumber: 18.0 Consensus size: 6
26958 TGAATGAGAA
* * * * * *
26968 TATCTC TCTCTA TATCTC TCTCTC TATCTG AAGTCTC TCTCTC TATCTC
1 TATCTC TATCTC TATCTC TATCTC TATCTC TA-TCTC TATCTC TATCTC
* * * * *
27017 TATCTC TCTCTA TATCTA TATCTC TATCTG TATCTCTC TCTCTC TATCTC
1 TATCTC TATCTC TATCTC TATCTC TATCTC TA--TCTC TATCTC TATCTC
* *
27067 TCTCTA TATCTC
1 TATCTC TATCTC
27079 ACTCTTCACT
Statistics
Matches: 78, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
6 71 0.91
7 3 0.04
8 4 0.05
ACGTcount: A:0.15, C:0.33, G:0.03, T:0.49
Consensus pattern (6 bp):
TATCTC
Left flanking sequence: Indices 26468 -- 26967
CTATATGGGCCGGTCCCGAACCCAGATGGCGGTTATAGTTCTGGTTCCAACCCAGCCAACTATGG
ATATACTATCTGGTCGTCCCCCATCTCGCCATCTAGCCATCTAGATAGAGAGGGGAGGGGAGGGG
GGATGCCCTATCTGGTCTAACCTGGCCCAGACCTATCTGGTTCAACCCGGCCCCTTTCGGTATTT
AGACCTATCTGTCCGGTTCCAACCCTAACCCGGCCCCTTTCGGCCCGGTCCCAGACGTTCCCAGA
CCTAACTGTCCGGGTCCTGTCGGGGCTATCTGTCCGATTCTGGCGACTATCTATATGCTTGTCCA
ACCGAGCCATATAGATAGTCCATATCTCTATCTGTATCTCTCTCTCTCTATCTCTCGATCTATCT
ATATCTCTCTCTCTCTCTATCTATATCTATATCTGAATGAGACTATCTCTCTCTCTCTCTATATC
TCTCTCAGATATATATCTCTCTCTCTATCTATATCTGAATGAGAA
Right flanking sequence: Indices 27079 -- 27578
ACTCTTCACTCTATATCTATATCTATATACAGGCGGGCCGACCGGGTAAGAAATAGTTGCCCCAC
GCTGCCTCATCTATTGTATTAGAGCCTCGAGAGTTGGGTCGGATATAGAGAGAGGGGCGGGGAAG
GGGAGGTTCTTTAGATCGGGGGTCGGTCAGGCACCTTCATCAGCCCAACCCCCCCAGATGGAATA
ATCCCTGCCCCTCCCCTGAACTATCTTCTCTATATGGCTCTCGGGGATAGAGAATCGACTGCCCA
ACTCCAACCCCGTGAGGCCGACAACCCCGTGGGCCCGAGGCCTTGCTCCCCCATACCGGATATCG
AATATTCAACTGCCCAACCCCATCTACCGAAATATATCTGAGAATACTCCATCCCCGCGGCCCTC
TATACTATATATATCTGTCGGGGGCCTTATATGATATGAACCTTTCGTTCGGAATACTTGTCTAG
CTATGCCGACTATGCCATGAGGAAGACGATGTCTCGTCCTCTCTC
Found at i:27096 original size:81 final size:81
Alignment explanation
Indices: 26934--27102 Score: 196
Period size: 81 Copynumber: 2.1 Consensus size: 81
26924 CTCTCAGATA
* * * *
26934 TATATCTCTCTCTCTATCTATATCTGAATGAGAATATCTCTCTCTATATCTCTCTCTCTATCTGA
1 TATATCTCTCTCTATATCTATATCTCAATCAGAATATCTCTCTCTATATCTCTCTCTATATCTGA
* * *
26999 AGTCTCTCTCTCTATC
66 ACTCTCACTCTATATC
* * * * * * *
27015 TCTATCTCTCTCTATATCTATATCTCTATCTGTATCTCTCTCTCTCTATCTCTCTCTATATCT-C
1 TATATCTCTCTCTATATCTATATCTCAATCAGAATATCTCTCTCTATATCTCTCTCTATATCTGA
27079 ACTCTTCACTCTATATC
66 ACTC-TCACTCTATATC
27096 TATATCT
1 TATATCT
27103 ATATACAGGC
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 3 0.04
81 69 0.96
ACGTcount: A:0.20, C:0.30, G:0.04, T:0.47
Consensus pattern (81 bp):
TATATCTCTCTCTATATCTATATCTCAATCAGAATATCTCTCTCTATATCTCTCTCTATATCTGA
ACTCTCACTCTATATC
Left flanking sequence: Indices 26434 -- 26933
GAGCCTGCCAGATACTAGAATCGGGGCTCTTTCTCTATATGGGCCGGTCCCGAACCCAGATGGCG
GTTATAGTTCTGGTTCCAACCCAGCCAACTATGGATATACTATCTGGTCGTCCCCCATCTCGCCA
TCTAGCCATCTAGATAGAGAGGGGAGGGGAGGGGGGATGCCCTATCTGGTCTAACCTGGCCCAGA
CCTATCTGGTTCAACCCGGCCCCTTTCGGTATTTAGACCTATCTGTCCGGTTCCAACCCTAACCC
GGCCCCTTTCGGCCCGGTCCCAGACGTTCCCAGACCTAACTGTCCGGGTCCTGTCGGGGCTATCT
GTCCGATTCTGGCGACTATCTATATGCTTGTCCAACCGAGCCATATAGATAGTCCATATCTCTAT
CTGTATCTCTCTCTCTCTATCTCTCGATCTATCTATATCTCTCTCTCTCTCTATCTATATCTATA
TCTGAATGAGACTATCTCTCTCTCTCTCTATATCTCTCTCAGATA
Right flanking sequence: Indices 27103 -- 27602
ATATACAGGCGGGCCGACCGGGTAAGAAATAGTTGCCCCACGCTGCCTCATCTATTGTATTAGAG
CCTCGAGAGTTGGGTCGGATATAGAGAGAGGGGCGGGGAAGGGGAGGTTCTTTAGATCGGGGGTC
GGTCAGGCACCTTCATCAGCCCAACCCCCCCAGATGGAATAATCCCTGCCCCTCCCCTGAACTAT
CTTCTCTATATGGCTCTCGGGGATAGAGAATCGACTGCCCAACTCCAACCCCGTGAGGCCGACAA
CCCCGTGGGCCCGAGGCCTTGCTCCCCCATACCGGATATCGAATATTCAACTGCCCAACCCCATC
TACCGAAATATATCTGAGAATACTCCATCCCCGCGGCCCTCTATACTATATATATCTGTCGGGGG
CCTTATATGATATGAACCTTTCGTTCGGAATACTTGTCTAGCTATGCCGACTATGCCATGAGGAA
GACGATGTCTCGTCCTCTCTCGTCTCCATCGTATCCATAGTCTCT
Found at i:27728 original size:4 final size:4
Alignment explanation
Indices: 27719--27755 Score: 65
Period size: 4 Copynumber: 9.0 Consensus size: 4
27709 CAACTAATCT
27719 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT-AG ATAG
27756 TCGACCCGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 28 0.88
5 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
ATAG
Left flanking sequence: Indices 27219 -- 27718
TTAGATCGGGGGTCGGTCAGGCACCTTCATCAGCCCAACCCCCCCAGATGGAATAATCCCTGCCC
CTCCCCTGAACTATCTTCTCTATATGGCTCTCGGGGATAGAGAATCGACTGCCCAACTCCAACCC
CGTGAGGCCGACAACCCCGTGGGCCCGAGGCCTTGCTCCCCCATACCGGATATCGAATATTCAAC
TGCCCAACCCCATCTACCGAAATATATCTGAGAATACTCCATCCCCGCGGCCCTCTATACTATAT
ATATCTGTCGGGGGCCTTATATGATATGAACCTTTCGTTCGGAATACTTGTCTAGCTATGCCGAC
TATGCCATGAGGAAGACGATGTCTCGTCCTCTCTCGTCTCCATCGTATCCATAGTCTCTTCTCGG
GGGCTCTGCCTATCCATAGATAGCATAACTTCACTATGGCACGTCGGAGGTGGTAGGGTGATGCC
CTATATCTATATATATAGAACTCGCCACAACTAATCAACTAATCT
Right flanking sequence: Indices 27756 -- 28255
TCGACCCGAGCCCCTATCCTATATGGGCGAGCCCTATCGGGGATGTGTATATATATTCCATATGG
GGGGCGCCCTATCTATAGTTCTTCCATAGTCTAGTGCCCATTGTCCATTGCCGAGAACTAATATA
TGGGTATGGGTTCTGGGGCCCCTAGAACTATAGGCCATCGCATCGGCCCCCCTCTCTCCCAACTA
TAGATAGGGGGGGGCCACTCGACCTTCTGATTGCATATCTACATACAGGGGGCGGGCGGCTATCT
CCCATATGTAGAGAGGGGGCCCAATTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAAT
AGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAA
TAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATATGCGCTCAAACTCGA
CAGCTCAACAGATAAGATAGTTCAGGGAGGGGGGCCCCAGCTAGA
Found at i:28052 original size:6 final size:6
Alignment explanation
Indices: 28041--28195 Score: 310
Period size: 6 Copynumber: 25.8 Consensus size: 6
28031 GGGGCCCAAT
28041 TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG
1 TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG
28089 TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG
1 TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG
28137 TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG
1 TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG TAATAG
28185 TAATAG TAATA
1 TAATAG TAATA
28196 TGCGCTCAAA
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 149 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
TAATAG
Left flanking sequence: Indices 27541 -- 28040
GACTATGCCATGAGGAAGACGATGTCTCGTCCTCTCTCGTCTCCATCGTATCCATAGTCTCTTCT
CGGGGGCTCTGCCTATCCATAGATAGCATAACTTCACTATGGCACGTCGGAGGTGGTAGGGTGAT
GCCCTATATCTATATATATAGAACTCGCCACAACTAATCAACTAATCTATAGATAGATAGATAGA
TAGATAGATAGATAAGATAGTCGACCCGAGCCCCTATCCTATATGGGCGAGCCCTATCGGGGATG
TGTATATATATTCCATATGGGGGGCGCCCTATCTATAGTTCTTCCATAGTCTAGTGCCCATTGTC
CATTGCCGAGAACTAATATATGGGTATGGGTTCTGGGGCCCCTAGAACTATAGGCCATCGCATCG
GCCCCCCTCTCTCCCAACTATAGATAGGGGGGGGCCACTCGACCTTCTGATTGCATATCTACATA
CAGGGGGCGGGCGGCTATCTCCCATATGTAGAGAGGGGGCCCAAT
Right flanking sequence: Indices 28196 -- 28695
TGCGCTCAAACTCGACAGCTCAACAGATAAGATAGTTCAGGGAGGGGGGCCCCAGCTAGAAGCTA
TATAGAAATAGTAGGCCGCCCTATCTGTATATATGCCTATCTACTATCCCTAGTAGACTCGCCCC
CTCCCCCCTCTATCTATATATGGATAGGGGATCCTCCCGAGAAAACCCAGATATATCTATAGGGG
GCCCTATAGCCCTATAGATCTAAGGGGAGGGAAGGGGCTCCCTATCTATATTCTATCTGGGGGGG
GGCTGTCGGCGCCCTATCTATATATACCCGCCCCCCCCCCACCCCAGAGAAAGTAGAGATAGGGG
CCCCCCCCCTCTAGATATATGGGTAGATATATCTCCCGAGAGAACTATAACTCTGTCGGCGCCCT
ATCTAGATATATACCCCATCTATGGCCCCACTATTCAGATATATCTCCCAAGCATGAATTAAATT
AAATGCCGTCGGCGCCCCGGGCCCCATATCTAGATTCAGTTCGTG
Found at i:28722 original size:24 final size:24
Alignment explanation
Indices: 28671--28722 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
28661 GGCGCCCCGG
* *
28671 GCCCCATATCTAGATTCAGTTCGT
1 GCCCCATATCTAGATTCAGATAGT
28695 GCCCCATATCTAGA-TCAGATAGT
1 GCCCCATATCTAGATTCAGATAGT
28718 CGCCC
1 -GCCC
28723 TCTAAAGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (24 bp):
GCCCCATATCTAGATTCAGATAGT
Left flanking sequence: Indices 28171 -- 28670
AGTAATAGTAATAGTAATAGTAATATGCGCTCAAACTCGACAGCTCAACAGATAAGATAGTTCAG
GGAGGGGGGCCCCAGCTAGAAGCTATATAGAAATAGTAGGCCGCCCTATCTGTATATATGCCTAT
CTACTATCCCTAGTAGACTCGCCCCCTCCCCCCTCTATCTATATATGGATAGGGGATCCTCCCGA
GAAAACCCAGATATATCTATAGGGGGCCCTATAGCCCTATAGATCTAAGGGGAGGGAAGGGGCTC
CCTATCTATATTCTATCTGGGGGGGGGCTGTCGGCGCCCTATCTATATATACCCGCCCCCCCCCC
ACCCCAGAGAAAGTAGAGATAGGGGCCCCCCCCCTCTAGATATATGGGTAGATATATCTCCCGAG
AGAACTATAACTCTGTCGGCGCCCTATCTAGATATATACCCCATCTATGGCCCCACTATTCAGAT
ATATCTCCCAAGCATGAATTAAATTAAATGCCGTCGGCGCCCCGG
Right flanking sequence: Indices 28723 -- 29222
TCTAAAGTCAGTTCCGCTCGGGGCAGCTATCTACTATCTCTATAGGGATAGGGCCCGACATCTAT
AGGAGCATCAGCGAGCTGTCGGGCATAGATCTAGATAGGGGTATATAGATAGGGGGCCAACCCTA
TCTCTATAGTCTATGGCATGGATGTCGCCCCGCCATAGATGTATAGGGCCTCCCAACCCCCCTAT
ATCTATATGGTATGGCAGAAAGGGCTTCGTTCGTCCGGTCAGCGGGGACAGAATGAAACGCCCCA
TCTCATCTCATTTAGGGCAGGGCGATTACCCGGGAGCGGTGGGTGGTGGGAATAGCAAGTTGGGA
CCCTATGACGATATGGGGGTTGGGTTGGGGCCATCTATCCCATCTATCTATAACCGGCCGGAAGG
TTGGGACCGATCTATCGTCTAGTCTAGTCTGCCATATAGATCTATATATATAGATTCTGGATCTA
GACTCTCTATCTGGGCAAGGCGAGGCCCATATAGATCTATATGGC
Found at i:31271 original size:12 final size:12
Alignment explanation
Indices: 31254--31281 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
31244 TCTTTAGAGA
31254 GGGAGAGGGAGT
1 GGGAGAGGGAGT
31266 GGGAGAGGGAGT
1 GGGAGAGGGAGT
31278 GGGA
1 GGGA
31282 TATTTATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.68, T:0.07
Consensus pattern (12 bp):
GGGAGAGGGAGT
Left flanking sequence: Indices 30754 -- 31253
CTCCGCCCTATACCTAGCTGCCCTATACCTAGACGGAGACGCCGATCACCATCGAGCGGTTCCCA
CAAATGCTACCTCCGGGTCAGCGGTTGGCTGGCCCCCAGATCTCTATATAGGGCAAGGGGATCGG
GTGTTTCGAGCCACTATATAGATATTACCAATGACCGAGAAACCGAGTGCTTCAACTTCCTCCTC
CCGCGCATTCATAGTAGACGACATAGTAGACAGACTTCTATCTTATCGGGCCCGACGAGTAGGAG
ACTTCTACAGACCATCTCTGCTGTGCGTCCCTCCTCTAATTACTTGGTCATGCAATACTCCTCTC
AGACGGAGAACCGGACTCTCTATAGCCTCAATCATTTCGCCTTGGATAAGAGAATACGTTTTTCC
GTAGAGAGCTTGACCGCCAAGACTCGCTCTGCCGGTAGGGCCGGCCACCCACCCCACTCCCCACT
ATTTAGAGAGGACCCACTCCCACTCCCACTCCCATTCTTTAGAGA
Right flanking sequence: Indices 31282 -- 31781
TATTTATTGCTATTGTTAGACAGGTCCTTGCTCTTCCTCGGTGCTACCCTGAACTCTATATCCCT
CGGATCTATAGGGAGGGGGGCCTCCCCAGATAGAGAGAGGGGCGAGCCCCGGGGCTCCAATATCT
CTCAAATCGATGCCCGGGAACAACTCCTCGGGAAATTGGGGAGGGCATTAAGGAACCGCCTGGGT
TCCAGATTGGGATTGGTAGGAAAAGACATAGACCTGGGAGGATTGATGAGAAGAATAGGGATGAT
GATAGGGGTAATACCGAAAAACAGAAGGATTCCGTACGGGTACAACTATTATTCGAACGAAGTGC
GGAAAATGCGATCCCTGCTGTCTGGTGGAACAAACGTGAATACCTCCATTGGGTCGGTCAAAATC
GAATCTGTCTATCAAAGTGCTTCTCCAATTGCTCAGGACATCTCTTTCCAACTGAGGGACGGAAC
AAGATCATTTCGTTCCATTTTTGGTCGAATAGTTCGGGATATTCC
Found at i:35050 original size:31 final size:31
Alignment explanation
Indices: 35012--35070 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
35002 GGTATTCGTC
*
35012 CCATATCTATA-TAACTGTCCTCGATCTCTAG
1 CCATATCTAGAGT-ACTGTCCTCGATCTCTAG
*
35043 CCATATCTAGAGTTCTGTCCTCGATCTC
1 CCATATCTAGAGTACTGTCCTCGATCTC
35071 CCATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.36
Consensus pattern (31 bp):
CCATATCTAGAGTACTGTCCTCGATCTCTAG
Left flanking sequence: Indices 34512 -- 35011
AGGGGGCTCACCCCGACGCGCTATATATTCCAAAGAGATATAGAGGGCTCGCCCCTATCCCCCCG
GGCGCCCGGCCCCCCCCCCCTCTCTATTATATCTCGGCTCCCATATAGATCTATATAGGGGGGGC
CCTATCTAACTATATAGATATGGGGGCGGCCTCCCCCAGCTACCAGCTCTATAGAGAGCCCCAGA
TAGATCTGGGCCCCCATCTATATGGATATAGAGGGGGGGCCATATCCAGTCGCCCTCTCTCTATA
TGGGCCCGACTAACTAACTATATATATATAGCCGCCCACTCTATATATAGATATCTATATAGCCT
ATCGCCGGGGTGCCGCCGCCCTCCCCCCCCCGAACTCTAGATAGGGGAGGGTCGGAGATACTATA
CTCGATCAAGGATTGGAGGACTCGATCTCTAGTTGGAGGTTGGGTACTCACCCATATAGAGAGAG
GGGGGCTTCAGAGTGGGAGTGGAGGCTTCAGAGTGGGTATTCGTC
Right flanking sequence: Indices 35071 -- 35570
CCATATATATGGATAGGGGAGTCCTCATCATACCCACATATAGAGAGAGGGGGGCTTCAGAGTGG
GTATTAGGCTTGGAGGACTCGAGATAGGCCCATATCTAGAGTTCTGTCCTCGATCTCCCATATAT
ATGGGTCCTCATACCATCATTGAAGGATTGGGTCCCATATAGAGAGAGGGGGGCTTCAGTCTGAA
GTGAAGGCCTATCTATATGGGAGTGCCCCATATCTAGACAGGGGGGCTTCCCCTATCCCTATCTC
TCTATTATATGGATGGATGGATGGATGGATGGATGGATGGATACGTGATTGATACGAATCGAATG
CTCCATCCAGCCCATAGATAGAGAATATGCCGCCCTCTCTATACTCTATAGCCTTTACCCTCTTA
TCCATCAGGCGATGGGAATCACTCCGGTATAACCACGGGGGGGCTGATGTTAGAGTCGTATCACG
TATATAAGAGTCCCACTGCCTCTACTCTCTCTATATGGCATGATT
Found at i:35348 original size:4 final size:4
Alignment explanation
Indices: 35339--35372 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
35329 TCTCTATTAT
35339 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG AT
1 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG AT
35373 ACGTGATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.26, C:0.00, G:0.47, T:0.26
Consensus pattern (4 bp):
ATGG
Left flanking sequence: Indices 34839 -- 35338
CGCCGGGGTGCCGCCGCCCTCCCCCCCCCGAACTCTAGATAGGGGAGGGTCGGAGATACTATACT
CGATCAAGGATTGGAGGACTCGATCTCTAGTTGGAGGTTGGGTACTCACCCATATAGAGAGAGGG
GGGCTTCAGAGTGGGAGTGGAGGCTTCAGAGTGGGTATTCGTCCCATATCTATATAACTGTCCTC
GATCTCTAGCCATATCTAGAGTTCTGTCCTCGATCTCCCATATATATGGATAGGGGAGTCCTCAT
CATACCCACATATAGAGAGAGGGGGGCTTCAGAGTGGGTATTAGGCTTGGAGGACTCGAGATAGG
CCCATATCTAGAGTTCTGTCCTCGATCTCCCATATATATGGGTCCTCATACCATCATTGAAGGAT
TGGGTCCCATATAGAGAGAGGGGGGCTTCAGTCTGAAGTGAAGGCCTATCTATATGGGAGTGCCC
CATATCTAGACAGGGGGGCTTCCCCTATCCCTATCTCTCTATTAT
Right flanking sequence: Indices 35373 -- 35872
ACGTGATTGATACGAATCGAATGCTCCATCCAGCCCATAGATAGAGAATATGCCGCCCTCTCTAT
ACTCTATAGCCTTTACCCTCTTATCCATCAGGCGATGGGAATCACTCCGGTATAACCACGGGGGG
GCTGATGTTAGAGTCGTATCACGTATATAAGAGTCCCACTGCCTCTACTCTCTCTATATGGCATG
ATTGCCCTATCTATATAGATTACCGCTGGCCATATAGATAGATAGAGGGACCGTTGGAATTCTGT
TGGTTCCATGTTTGTTGGTTCTCCGAGCCAAGCCATATAGATCAGATGGATGCCCGGGCCCCCCC
CCATATAGAAACTAAACAGAAGGGGAGGGCCCCTATCTCCCCATAGATAGAGAGGGGCGCCCCCC
CGATAGGGATCTATGGGGCAACTGGGGACTATAGAGAGAGAGTCTCGGTAGATCTGATCTCTATA
GCCCATATATAGATCAATCTATACGGAGCTCAACGGTTTCACGCC
Found at i:35981 original size:13 final size:13
Alignment explanation
Indices: 35963--35989 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35953 CTCTATAGGG
35963 GCGGGAGAGTGGA
1 GCGGGAGAGTGGA
35976 GCGGGAGAGTGGA
1 GCGGGAGAGTGGA
35989 G
1 G
35990 TGCCACCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.63, T:0.07
Consensus pattern (13 bp):
GCGGGAGAGTGGA
Left flanking sequence: Indices 35463 -- 35962
CATCAGGCGATGGGAATCACTCCGGTATAACCACGGGGGGGCTGATGTTAGAGTCGTATCACGTA
TATAAGAGTCCCACTGCCTCTACTCTCTCTATATGGCATGATTGCCCTATCTATATAGATTACCG
CTGGCCATATAGATAGATAGAGGGACCGTTGGAATTCTGTTGGTTCCATGTTTGTTGGTTCTCCG
AGCCAAGCCATATAGATCAGATGGATGCCCGGGCCCCCCCCCATATAGAAACTAAACAGAAGGGG
AGGGCCCCTATCTCCCCATAGATAGAGAGGGGCGCCCCCCCGATAGGGATCTATGGGGCAACTGG
GGACTATAGAGAGAGAGTCTCGGTAGATCTGATCTCTATAGCCCATATATAGATCAATCTATACG
GAGCTCAACGGTTTCACGCCCCTATATCCGATGGGGCCGGCCGGCCATATATAGATCTAGATAGG
GGCCCATCATGAATTCTAGCTGTATCATTCCAGATCTCTATAGGG
Right flanking sequence: Indices 35990 -- 36489
TGCCACCTCGAGATTCTATCTTGTCTTGTTCTCGAGTGCCTATAGAACTAGATCTAGAATGGTAG
TTGAGTCTAGAATGGATGGTAGTTGAGTTGTCACTTATCCCGTCGCTAGACATGATACAGTCGTC
TCATCTCAGTCGGGACATCACTATAGTCTTAGTCGGGACATCACTATAGTCAATCTATAGACTCG
AAGAGGAGTTTGTAGCTGATCGGATAGATACGCCAGATAGATCCAGATAGAACTCTAGGGGGGGG
GGTGCTCTGTTTGGAGATGGGGGTAGAGAGATATCTGGGGGGCATACATATAGAATAGGGAGTTG
GAGCCATATCTATATATAGGATAGGGGAGAGATCCGCCCATAGATATGGATGGCAGCGGGAGAGG
ATTCTAGATTCTCTAGGGGGCGGTCGATTCTAGTATGAGCAGGCTCTCGAGTGATACTGGGGAAG
ATATAGATCTCTATATAGATCTATATAGATAGGGTCTGGGGATGG
Found at i:36157 original size:23 final size:23
Alignment explanation
Indices: 36127--36170 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
36117 GTCTCATCTC
36127 AGTCGGGACATCACTATAGTCTT
1 AGTCGGGACATCACTATAGTCTT
36150 AGTCGGGACATCACTATAGTC
1 AGTCGGGACATCACTATAGTC
36171 AATCTATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (23 bp):
AGTCGGGACATCACTATAGTCTT
Left flanking sequence: Indices 35627 -- 36126
TTCTGTTGGTTCCATGTTTGTTGGTTCTCCGAGCCAAGCCATATAGATCAGATGGATGCCCGGGC
CCCCCCCCATATAGAAACTAAACAGAAGGGGAGGGCCCCTATCTCCCCATAGATAGAGAGGGGCG
CCCCCCCGATAGGGATCTATGGGGCAACTGGGGACTATAGAGAGAGAGTCTCGGTAGATCTGATC
TCTATAGCCCATATATAGATCAATCTATACGGAGCTCAACGGTTTCACGCCCCTATATCCGATGG
GGCCGGCCGGCCATATATAGATCTAGATAGGGGCCCATCATGAATTCTAGCTGTATCATTCCAGA
TCTCTATAGGGGCGGGAGAGTGGAGCGGGAGAGTGGAGTGCCACCTCGAGATTCTATCTTGTCTT
GTTCTCGAGTGCCTATAGAACTAGATCTAGAATGGTAGTTGAGTCTAGAATGGATGGTAGTTGAG
TTGTCACTTATCCCGTCGCTAGACATGATACAGTCGTCTCATCTC
Right flanking sequence: Indices 36171 -- 36670
AATCTATAGACTCGAAGAGGAGTTTGTAGCTGATCGGATAGATACGCCAGATAGATCCAGATAGA
ACTCTAGGGGGGGGGGTGCTCTGTTTGGAGATGGGGGTAGAGAGATATCTGGGGGGCATACATAT
AGAATAGGGAGTTGGAGCCATATCTATATATAGGATAGGGGAGAGATCCGCCCATAGATATGGAT
GGCAGCGGGAGAGGATTCTAGATTCTCTAGGGGGCGGTCGATTCTAGTATGAGCAGGCTCTCGAG
TGATACTGGGGAAGATATAGATCTCTATATAGATCTATATAGATAGGGTCTGGGGATGGGGTTGC
CCTGAACTATCCATATGGCAGTTCAGAGCCTACTGTATCGTATGAGTGATTGCCCATATCCATAG
ATAGATAGATAGATAGATAGATAGATAGATATAGGGGATCGATCCCCTCCCCTCCAGATATAGAG
GTAGAGGGGCCCGCCCCATACCCCGAACTAGTTATAGGGCTCTCT
Found at i:36566 original size:4 final size:4
Alignment explanation
Indices: 36557--36591 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
36547 GCCCATATCC
36557 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
36592 TAGGGGATCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
ATAG
Left flanking sequence: Indices 36057 -- 36556
GAGTCTAGAATGGATGGTAGTTGAGTTGTCACTTATCCCGTCGCTAGACATGATACAGTCGTCTC
ATCTCAGTCGGGACATCACTATAGTCTTAGTCGGGACATCACTATAGTCAATCTATAGACTCGAA
GAGGAGTTTGTAGCTGATCGGATAGATACGCCAGATAGATCCAGATAGAACTCTAGGGGGGGGGG
TGCTCTGTTTGGAGATGGGGGTAGAGAGATATCTGGGGGGCATACATATAGAATAGGGAGTTGGA
GCCATATCTATATATAGGATAGGGGAGAGATCCGCCCATAGATATGGATGGCAGCGGGAGAGGAT
TCTAGATTCTCTAGGGGGCGGTCGATTCTAGTATGAGCAGGCTCTCGAGTGATACTGGGGAAGAT
ATAGATCTCTATATAGATCTATATAGATAGGGTCTGGGGATGGGGTTGCCCTGAACTATCCATAT
GGCAGTTCAGAGCCTACTGTATCGTATGAGTGATTGCCCATATCC
Right flanking sequence: Indices 36592 -- 37091
TAGGGGATCGATCCCCTCCCCTCCAGATATAGAGGTAGAGGGGCCCGCCCCATACCCCGAACTAG
TTATAGGGCTCTCTATATATAGCCGCGCTGCTCCCCCAGCTATCTATATACCGTCGGGGGAGGAG
CTATATAGAGTAGATAGAGAACATAGATAGTCAACCACACCACATACTAGTCAGTCACGAGTTCG
GAACTGAGAGTCAGTCACGTATATCTCTCTCTCTATCTGAACTCTATATCTCTCTCTCTCTCTAG
ATCTCTCTCTGAACTCTATATCTCTATCTCACTCTTCACTCTTCACTCTTCACTCTATATCTATA
CTCCATGCCGAGGCCCTAGAGTTCTATCTGGGAGAGGACGGCAGCCCCTGAACTCTATATGGCAC
CCCACCCCGCCCCCCCCCCTGAACTCTATATGGCTATATGGAGCCCCTGAACTCTATATGGCTAT
ATGGCACCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCTG
Found at i:36863 original size:37 final size:37
Alignment explanation
Indices: 36816--36886 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
36806 TATATCTCTC
* *
36816 TCTCTATCTGAACTCTATATCTCTCTCTCTCTCTAGA
1 TCTCTATCTGAACTCTATATCTCTATCTCACTCTAGA
*
36853 TCTCTCTCTGAACTCTATATCTCTATCTCACTCT
1 TCTCTATCTGAACTCTATATCTCTATCTCACTCT
36887 TCACTCTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.18, C:0.34, G:0.04, T:0.44
Consensus pattern (37 bp):
TCTCTATCTGAACTCTATATCTCTATCTCACTCTAGA
Left flanking sequence: Indices 36316 -- 36815
AGCCATATCTATATATAGGATAGGGGAGAGATCCGCCCATAGATATGGATGGCAGCGGGAGAGGA
TTCTAGATTCTCTAGGGGGCGGTCGATTCTAGTATGAGCAGGCTCTCGAGTGATACTGGGGAAGA
TATAGATCTCTATATAGATCTATATAGATAGGGTCTGGGGATGGGGTTGCCCTGAACTATCCATA
TGGCAGTTCAGAGCCTACTGTATCGTATGAGTGATTGCCCATATCCATAGATAGATAGATAGATA
GATAGATAGATAGATATAGGGGATCGATCCCCTCCCCTCCAGATATAGAGGTAGAGGGGCCCGCC
CCATACCCCGAACTAGTTATAGGGCTCTCTATATATAGCCGCGCTGCTCCCCCAGCTATCTATAT
ACCGTCGGGGGAGGAGCTATATAGAGTAGATAGAGAACATAGATAGTCAACCACACCACATACTA
GTCAGTCACGAGTTCGGAACTGAGAGTCAGTCACGTATATCTCTC
Right flanking sequence: Indices 36887 -- 37386
TCACTCTTCACTCTTCACTCTATATCTATACTCCATGCCGAGGCCCTAGAGTTCTATCTGGGAGA
GGACGGCAGCCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCCCCTGAACTCTATATGGCT
ATATGGAGCCCCTGAACTCTATATGGCTATATGGCACCCCTGAACTCTATATGGCACCCCACCCC
GCCCCCCCTGAACTCTATATGGCTATATGGCTATATGGAGCCCCTGAACTCTATATGGCTATATG
GCACTCGATGCCCTATATCTATATGGCACTCGATATCAAGGACGAGTCTTCTCTACGTGATACGA
AGAGAGCACAAGTATTCTAGACGTGATACGAAGAGTGCCCACCCATTTCTCTATCTACAGAAAAG
GTTCTCTCTATAGACAGAAGTTTATGTGCTCTATCCGAGGTCTCAATATTCTCCCCTTTTCTGTA
TACAGGACAGAAAGGGTGCTCATCTATCTACAGAATGCAACCCCT
Found at i:36892 original size:7 final size:7
Alignment explanation
Indices: 36880--36907 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
36870 TATCTCTATC
36880 TCACTCT
1 TCACTCT
36887 TCACTCT
1 TCACTCT
36894 TCACTCT
1 TCACTCT
36901 TCACTCT
1 TCACTCT
36908 ATATCTATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
TCACTCT
Left flanking sequence: Indices 36380 -- 36879
ATTCTAGATTCTCTAGGGGGCGGTCGATTCTAGTATGAGCAGGCTCTCGAGTGATACTGGGGAAG
ATATAGATCTCTATATAGATCTATATAGATAGGGTCTGGGGATGGGGTTGCCCTGAACTATCCAT
ATGGCAGTTCAGAGCCTACTGTATCGTATGAGTGATTGCCCATATCCATAGATAGATAGATAGAT
AGATAGATAGATAGATATAGGGGATCGATCCCCTCCCCTCCAGATATAGAGGTAGAGGGGCCCGC
CCCATACCCCGAACTAGTTATAGGGCTCTCTATATATAGCCGCGCTGCTCCCCCAGCTATCTATA
TACCGTCGGGGGAGGAGCTATATAGAGTAGATAGAGAACATAGATAGTCAACCACACCACATACT
AGTCAGTCACGAGTTCGGAACTGAGAGTCAGTCACGTATATCTCTCTCTCTATCTGAACTCTATA
TCTCTCTCTCTCTCTAGATCTCTCTCTGAACTCTATATCTCTATC
Right flanking sequence: Indices 36908 -- 37407
ATATCTATACTCCATGCCGAGGCCCTAGAGTTCTATCTGGGAGAGGACGGCAGCCCCTGAACTCT
ATATGGCACCCCACCCCGCCCCCCCCCCTGAACTCTATATGGCTATATGGAGCCCCTGAACTCTA
TATGGCTATATGGCACCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCTGAACTCTATATG
GCTATATGGCTATATGGAGCCCCTGAACTCTATATGGCTATATGGCACTCGATGCCCTATATCTA
TATGGCACTCGATATCAAGGACGAGTCTTCTCTACGTGATACGAAGAGAGCACAAGTATTCTAGA
CGTGATACGAAGAGTGCCCACCCATTTCTCTATCTACAGAAAAGGTTCTCTCTATAGACAGAAGT
TTATGTGCTCTATCCGAGGTCTCAATATTCTCCCCTTTTCTGTATACAGGACAGAAAGGGTGCTC
ATCTATCTACAGAATGCAACCCCTCGTATGACGATCTCTCTAGTG
Found at i:37037 original size:28 final size:28
Alignment explanation
Indices: 36997--37071 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
36987 CCCGCCCCCC
36997 CCCCTGAACTCTATATGGCTATATGG-A
1 CCCCTGAACTCTATATGGCTATATGGCA
37024 GCCCCTGAACTCTATATGGCTATATGGCA
1 -CCCCTGAACTCTATATGGCTATATGGCA
37053 CCCCTGAACTCTATATGGC
1 CCCCTGAACTCTATATGGC
37072 ACCCCACCCC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 45 0.98
29 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (28 bp):
CCCCTGAACTCTATATGGCTATATGGCA
Left flanking sequence: Indices 36497 -- 36996
CTGAACTATCCATATGGCAGTTCAGAGCCTACTGTATCGTATGAGTGATTGCCCATATCCATAGA
TAGATAGATAGATAGATAGATAGATAGATATAGGGGATCGATCCCCTCCCCTCCAGATATAGAGG
TAGAGGGGCCCGCCCCATACCCCGAACTAGTTATAGGGCTCTCTATATATAGCCGCGCTGCTCCC
CCAGCTATCTATATACCGTCGGGGGAGGAGCTATATAGAGTAGATAGAGAACATAGATAGTCAAC
CACACCACATACTAGTCAGTCACGAGTTCGGAACTGAGAGTCAGTCACGTATATCTCTCTCTCTA
TCTGAACTCTATATCTCTCTCTCTCTCTAGATCTCTCTCTGAACTCTATATCTCTATCTCACTCT
TCACTCTTCACTCTTCACTCTATATCTATACTCCATGCCGAGGCCCTAGAGTTCTATCTGGGAGA
GGACGGCAGCCCCTGAACTCTATATGGCACCCCACCCCGCCCCCC
Right flanking sequence: Indices 37072 -- 37571
ACCCCACCCCGCCCCCCCTGAACTCTATATGGCTATATGGCTATATGGAGCCCCTGAACTCTATA
TGGCTATATGGCACTCGATGCCCTATATCTATATGGCACTCGATATCAAGGACGAGTCTTCTCTA
CGTGATACGAAGAGAGCACAAGTATTCTAGACGTGATACGAAGAGTGCCCACCCATTTCTCTATC
TACAGAAAAGGTTCTCTCTATAGACAGAAGTTTATGTGCTCTATCCGAGGTCTCAATATTCTCCC
CTTTTCTGTATACAGGACAGAAAGGGTGCTCATCTATCTACAGAATGCAACCCCTCGTATGACGA
TCTCTCTAGTGCCCACCAGGTAGCCATAGAGGATGTGCCCACCCAGCTCTATTCTATCTAGACTC
ATATCTCATCTATCTAGTCCCACCCATTCACACATACAATAGAAGCCCCTCGAGATAGATAGATA
GATAGATAGATAGATCTATGAGCTAATCTATCTAGATCTAGTCTC
Found at i:37134 original size:97 final size:92
Alignment explanation
Indices: 36956--37150 Score: 295
Period size: 97 Copynumber: 2.1 Consensus size: 92
36946 GGGAGAGGAC
36956 GGCAGCCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCCCCTGAACTCTATATGGCTATAT
1 GGCA-CCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCCCCTGAACTCTATATGGCTATAT
37021 GGAGCCCCTGAACTCTATATGGCTATAT
65 GGAGCCCCTGAACTCTATATGGCTATAT
*
37049 GGCACCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCTGAACTCT-ATA-TGGCTATATGG
1 GGCACCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCC----CCCTGA-ACT--CTATATGG
37112 CTATATGGAGCCCCTGAACTCTATATGGCTATAT
59 CTATATGGAGCCCCTGAACTCTATATGGCTATAT
37146 GGCAC
1 GGCAC
37151 TCGATGCCCT
Statistics
Matches: 94, Mismatches: 1, Indels: 10
0.90 0.01 0.10
Matches are distributed among these distances:
92 37 0.39
93 4 0.04
95 2 0.02
96 4 0.04
97 47 0.50
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (92 bp):
GGCACCCCTGAACTCTATATGGCACCCCACCCCGCCCCCCCCCCTGAACTCTATATGGCTATATG
GAGCCCCTGAACTCTATATGGCTATAT
Left flanking sequence: Indices 36456 -- 36955
TATATAGATCTATATAGATAGGGTCTGGGGATGGGGTTGCCCTGAACTATCCATATGGCAGTTCA
GAGCCTACTGTATCGTATGAGTGATTGCCCATATCCATAGATAGATAGATAGATAGATAGATAGA
TAGATATAGGGGATCGATCCCCTCCCCTCCAGATATAGAGGTAGAGGGGCCCGCCCCATACCCCG
AACTAGTTATAGGGCTCTCTATATATAGCCGCGCTGCTCCCCCAGCTATCTATATACCGTCGGGG
GAGGAGCTATATAGAGTAGATAGAGAACATAGATAGTCAACCACACCACATACTAGTCAGTCACG
AGTTCGGAACTGAGAGTCAGTCACGTATATCTCTCTCTCTATCTGAACTCTATATCTCTCTCTCT
CTCTAGATCTCTCTCTGAACTCTATATCTCTATCTCACTCTTCACTCTTCACTCTTCACTCTATA
TCTATACTCCATGCCGAGGCCCTAGAGTTCTATCTGGGAGAGGAC
Right flanking sequence: Indices 37151 -- 37650
TCGATGCCCTATATCTATATGGCACTCGATATCAAGGACGAGTCTTCTCTACGTGATACGAAGAG
AGCACAAGTATTCTAGACGTGATACGAAGAGTGCCCACCCATTTCTCTATCTACAGAAAAGGTTC
TCTCTATAGACAGAAGTTTATGTGCTCTATCCGAGGTCTCAATATTCTCCCCTTTTCTGTATACA
GGACAGAAAGGGTGCTCATCTATCTACAGAATGCAACCCCTCGTATGACGATCTCTCTAGTGCCC
ACCAGGTAGCCATAGAGGATGTGCCCACCCAGCTCTATTCTATCTAGACTCATATCTCATCTATC
TAGTCCCACCCATTCACACATACAATAGAAGCCCCTCGAGATAGATAGATAGATAGATAGATAGA
TCTATGAGCTAATCTATCTAGATCTAGTCTCACTAGGAAACAAGGAACCCCACGCCAGGTAGATC
TATAGGGCAACCACATAGGTTGGAACACCCACCCTTCTCTCTTCA
Found at i:37523 original size:4 final size:4
Alignment explanation
Indices: 37514--37541 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
37504 AAGCCCCTCG
37514 AGAT AGAT AGAT AGAT AGAT AGAT AGAT
1 AGAT AGAT AGAT AGAT AGAT AGAT AGAT
37542 CTATGAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
AGAT
Left flanking sequence: Indices 37014 -- 37513
GCTATATGGAGCCCCTGAACTCTATATGGCTATATGGCACCCCTGAACTCTATATGGCACCCCAC
CCCGCCCCCCCTGAACTCTATATGGCTATATGGCTATATGGAGCCCCTGAACTCTATATGGCTAT
ATGGCACTCGATGCCCTATATCTATATGGCACTCGATATCAAGGACGAGTCTTCTCTACGTGATA
CGAAGAGAGCACAAGTATTCTAGACGTGATACGAAGAGTGCCCACCCATTTCTCTATCTACAGAA
AAGGTTCTCTCTATAGACAGAAGTTTATGTGCTCTATCCGAGGTCTCAATATTCTCCCCTTTTCT
GTATACAGGACAGAAAGGGTGCTCATCTATCTACAGAATGCAACCCCTCGTATGACGATCTCTCT
AGTGCCCACCAGGTAGCCATAGAGGATGTGCCCACCCAGCTCTATTCTATCTAGACTCATATCTC
ATCTATCTAGTCCCACCCATTCACACATACAATAGAAGCCCCTCG
Right flanking sequence: Indices 37542 -- 38041
CTATGAGCTAATCTATCTAGATCTAGTCTCACTAGGAAACAAGGAACCCCACGCCAGGTAGATCT
ATAGGGCAACCACATAGGTTGGAACACCCACCCTTCTCTCTTCACTGGACGGATAAGAGTCTTCA
TAGGGAGCATGCTCGCCCAAACACATACGTAGACCCACCACCCTTCGATATAACTATAGGCCGAA
TGGACGAGGAGCATTCTAGATAGGTCCCTCGTGACTGATCTCTTTCCTATAGATTTTTGAGATGG
CTCCGACCGAGAGAGAAGAGACCGTCCCGTCCATATCAATCGATCGATCAATCAATCTAGATCTC
TCTGGCCGCCGGCTGCCCTATATATCTATCAGATCTAAGATGCGACTCTCAGATCTAAGATCTCT
ATTCTATATGTATGTCCATATATAACTATAGCCATTCGCCATATCCCATATCTTTCTTGGCGATC
TGGAGTGGAAGGGCCCCAGCCCCAATATACAATATAGATATAGTT
Found at i:39293 original size:15 final size:15
Alignment explanation
Indices: 39273--39302 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
39263 GAAGGTTTCT
39273 CTAGACTGGACGGAA
1 CTAGACTGGACGGAA
39288 CTAGACTGGACGGAA
1 CTAGACTGGACGGAA
39303 GCCTATCGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.33, T:0.13
Consensus pattern (15 bp):
CTAGACTGGACGGAA
Left flanking sequence: Indices 38773 -- 39272
CCCCCCTATCTATTCTATCTGGGGTCTCGTCCGGGCGCCATATCCGTATATAGGGTGCCCGGGGG
ACCCAGTTGAGATCGGTGGATAGGTGAGATAGGAAAGATCATCAATAGTTCTATTGGAGATAGAT
ATCTATATAGGGGCGGGCGGCTGGCCCCATATCTCATATCTGGTGAGAAGAAGGATTGATTATTG
ATTGGAATTTTTTTAACCTCGAAACCGCAGGCCCTGAGAGATATATATATATATATATAGGGCCA
GATAGATCTATAGGGGAGGTCGAAGGGGGGCGCCAACTCGCTTAAATGAGAGGCCCCTGTTCCCC
GAACTGGGCCTTGTTCGATATCGTTCAAGGGCCTGAGCAAATGGAGAAGCGTATGCCGAGTGGGC
GGAGCCATGGAGATGGGGCGGCATTCGACTTACGATCCAATTCATAAGCTGCTGTCCCCCGGTCA
CTACGACTCATACAGTTCTGAGGGTCGACTGGACGGAAGGTTTCT
Right flanking sequence: Indices 39303 -- 39802
GCCTATCGGGTTACTATCTATATATAGGGACTCGAGGACTCCGGTAGCTTACTATTCCTATCAGC
TATCAGCTCTCTATATAGGGGAGGGGTCCCCAGAGAGATCTATAGGGAGCAACTGCCCAGCCCCG
CCCCATATATAGACTAGACTAGACTAGACTAGACTAGACTAGACAGACATGAACCTTGCCCCGAC
GCCCCATATAGAGAGAGATCTCGAGGGCCCCAGATAGTTCTAGGGTCTCTGGGTCTCTCCGGACA
GGTTCTCTCGCCCGATTGTGACCGGCCCCTATCCGAGTGACGGTACTGGCGTTATGATCGTCGAG
TCTCGTCTCGATGGGATGGATGCCATAGTTCAGATAGGGGGTGCCCCTATATAGAGAATATAGGG
GATGACGTGGTACCCCCTCTATATAGATAGATCTCTATATGGTAGATGGATGATGCTAGATGGAT
GCCATAGTTCAGATAGGGGGCGGTAGATGGATGATGTGGTGCTCC
Found at i:39450 original size:5 final size:5
Alignment explanation
Indices: 39442--39480 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
39432 GCCCCATATA
39442 TAGAC TAGAC TAGAC TAGAC TAGAC TAGAC TAGAC -AGAC
1 TAGAC TAGAC TAGAC TAGAC TAGAC TAGAC TAGAC TAGAC
39481 ATGAACCTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 30 0.88
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.18
Consensus pattern (5 bp):
TAGAC
Left flanking sequence: Indices 38942 -- 39441
CTGGTGAGAAGAAGGATTGATTATTGATTGGAATTTTTTTAACCTCGAAACCGCAGGCCCTGAGA
GATATATATATATATATATAGGGCCAGATAGATCTATAGGGGAGGTCGAAGGGGGGCGCCAACTC
GCTTAAATGAGAGGCCCCTGTTCCCCGAACTGGGCCTTGTTCGATATCGTTCAAGGGCCTGAGCA
AATGGAGAAGCGTATGCCGAGTGGGCGGAGCCATGGAGATGGGGCGGCATTCGACTTACGATCCA
ATTCATAAGCTGCTGTCCCCCGGTCACTACGACTCATACAGTTCTGAGGGTCGACTGGACGGAAG
GTTTCTCTAGACTGGACGGAACTAGACTGGACGGAAGCCTATCGGGTTACTATCTATATATAGGG
ACTCGAGGACTCCGGTAGCTTACTATTCCTATCAGCTATCAGCTCTCTATATAGGGGAGGGGTCC
CCAGAGAGATCTATAGGGAGCAACTGCCCAGCCCCGCCCCATATA
Right flanking sequence: Indices 39481 -- 39980
ATGAACCTTGCCCCGACGCCCCATATAGAGAGAGATCTCGAGGGCCCCAGATAGTTCTAGGGTCT
CTGGGTCTCTCCGGACAGGTTCTCTCGCCCGATTGTGACCGGCCCCTATCCGAGTGACGGTACTG
GCGTTATGATCGTCGAGTCTCGTCTCGATGGGATGGATGCCATAGTTCAGATAGGGGGTGCCCCT
ATATAGAGAATATAGGGGATGACGTGGTACCCCCTCTATATAGATAGATCTCTATATGGTAGATG
GATGATGCTAGATGGATGCCATAGTTCAGATAGGGGGCGGTAGATGGATGATGTGGTGCTCCCCC
TATCTATAGATTAGATAGGCCCCGACGGCCCGGCCTACTCTATATAGCTGGGGGAGAGGGAACTC
TCTATAGTCAGGCACTCCCCCGACGCCTCCCCGTTCGGGCCTCCCCTCCCCCCCCCCCTCTATAT
AGATGGAGATGGGCCCGCCTCTCTCTATCCTTTCTATTCATATAC
Found at i:41543 original size:6 final size:6
Alignment explanation
Indices: 41532--41574 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
41522 GGGCATCATC
*
41532 GGGTTG GGGTTG GGGTTG GGGTTG AGGTTGG GGGTT- GGGTTG G
1 GGGTTG GGGTTG GGGTTG GGGTTG GGGTT-G GGGTTG GGGTTG G
41575 CCATCCCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 5 0.15
6 23 0.70
7 5 0.15
ACGTcount: A:0.02, C:0.00, G:0.65, T:0.33
Consensus pattern (6 bp):
GGGTTG
Left flanking sequence: Indices 41032 -- 41531
AGATACCGATACCGCCGGCGCTGTTTGCCCACCTCCCTCCCCATCCCATCCCATATAGTTAGAGA
CGAGACGACATATCAGACCTTTCAATTTACTCTATTCCATATAAGACTAGACTATAGAGAGTCCG
CTCGACCGCCTCTACTCACGGGGTGGAGGAGTGAGCGCAGATAGAGAGAATAGATGAGCACTCGA
CCCCATCCCATATAGAGAGAGGGGCCTAACCTTTCTAGATAGTGGTTAGGAGGGCCCTGTATTGA
ATAGTTCAGGGCCCTAGCCATATAGATCTATAGGCGATCTCATAATTGATCGCCTAGAAAGAATA
TATGGCGGGCCCCATATCTAGACCTAGACAACTACCATTTCCAGCTCTGCCCTACTCTATTATAT
GGCATTTATCATAGATCTAGCGACGGGCCGGACGATCAAAGTGACGAGAAGCCCCCACGAGACCG
AGAAGATAGAGGGGCTTCTCGGGGGCTTCTCGTGGGGGCATCATC
Right flanking sequence: Indices 41575 -- 42074
CCATCCCATATATACGGGTTGGGGTTCAGTCTGGACTATGGAGTGGAGGTTGGTTTTCTATCTAT
ATGGATATGGCGCTCTGAGCCATATAGAACTATAGGGGGTTGGGGGGCCAACCCATGTATAGTCG
AGGTCATTATCTAGAATTCGAGGAGGGCCCCTATCCCTATATATATAGGCCAACGGGAGAGGATT
CTATACCTATATAGTAGAGTGGCCCTCCCCCAACTCCGACCAGGCCGTCGGGAGAGGGCATGAAA
AGAACTATAGGGGCCCGCCTCAACTGACGCCATATATAGATAGGGGCCCGACGGCCCCGGATGGA
TATATAGGCTACTATAGGATCCGAACTCCATATCTATATCTCTATAGACATATAGAGGGGGAGGG
GCCCCCCCGATCGAGGGCCCCATAGATAGATATCTATATCTATAGATCTCTATATCTATAGATCT
CTATATAGATCTATATCTCCCCTATGACTTTCTATAGTGGCCCCC
Found at i:42011 original size:16 final size:16
Alignment explanation
Indices: 41990--42035 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
41980 GGCCCCATAG
*
41990 ATAGATATCTATATCT
1 ATAGATCTCTATATCT
42006 ATAGATCTCTATATCT
1 ATAGATCTCTATATCT
42022 ATAGATCTCTATAT
1 ATAGATCTCTATAT
42036 AGATCTATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (16 bp):
ATAGATCTCTATATCT
Left flanking sequence: Indices 41490 -- 41989
AGATAGAGGGGCTTCTCGGGGGCTTCTCGTGGGGGCATCATCGGGTTGGGGTTGGGGTTGGGGTT
GAGGTTGGGGGTTGGGTTGGCCATCCCATATATACGGGTTGGGGTTCAGTCTGGACTATGGAGTG
GAGGTTGGTTTTCTATCTATATGGATATGGCGCTCTGAGCCATATAGAACTATAGGGGGTTGGGG
GGCCAACCCATGTATAGTCGAGGTCATTATCTAGAATTCGAGGAGGGCCCCTATCCCTATATATA
TAGGCCAACGGGAGAGGATTCTATACCTATATAGTAGAGTGGCCCTCCCCCAACTCCGACCAGGC
CGTCGGGAGAGGGCATGAAAAGAACTATAGGGGCCCGCCTCAACTGACGCCATATATAGATAGGG
GCCCGACGGCCCCGGATGGATATATAGGCTACTATAGGATCCGAACTCCATATCTATATCTCTAT
AGACATATAGAGGGGGAGGGGCCCCCCCGATCGAGGGCCCCATAG
Right flanking sequence: Indices 42036 -- 42535
AGATCTATATCTCCCCTATGACTTTCTATAGTGGCCCCCTATCTAGATCTCTTCCCTATCTCCCT
ATCGGCCGGCCAACCCGAAACCCACCGCCAATTGAATTGATAATAGTCTCGTCTCCATATCTTGC
CTTCCGGGCCTCTCTCTATATCTCTCTCTAGATCTTGCTCTAATCTATATGGAGTGAGTAGGTAG
GTGAGTGAGTAACCGGGGTCCTATAGAGAATTGGGAGAATTGGGGCCCTATATCTTATCTTAAGA
TAGTTGGGGGCCATCTATCTATATCTATATACGAAGTAGTGATATCAATGTGCCCAGACTAGACT
CTAGAGGGGAGGGGCCATGTAGATTAGATCTCTATCTATCCATCTATGGCCAGGCCAGGTAGATA
GAGATCTATCTCTCTATCTATCCATCTGGGTTGGCTAGATATAGAGGCCGGGGAGAGTTGGCGAT
ATAGAGTAGAGGGCCGGGTTGGGATATAGAGTAGAGGGCCGGGTA
Found at i:42516 original size:25 final size:26
Alignment explanation
Indices: 42482--42534 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
42472 GCCGGGGAGA
42482 GTTGGCGATATAGAGTAGAGGGCCGG
1 GTTGGCGATATAGAGTAGAGGGCCGG
42508 GTTGG-GATATAGAGTAGAGGGCCGG
1 GTTGGCGATATAGAGTAGAGGGCCGG
42533 GT
1 GT
42535 ATAGAATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.23, C:0.09, G:0.47, T:0.21
Consensus pattern (26 bp):
GTTGGCGATATAGAGTAGAGGGCCGG
Left flanking sequence: Indices 41982 -- 42481
CCCCATAGATAGATATCTATATCTATAGATCTCTATATCTATAGATCTCTATATAGATCTATATC
TCCCCTATGACTTTCTATAGTGGCCCCCTATCTAGATCTCTTCCCTATCTCCCTATCGGCCGGCC
AACCCGAAACCCACCGCCAATTGAATTGATAATAGTCTCGTCTCCATATCTTGCCTTCCGGGCCT
CTCTCTATATCTCTCTCTAGATCTTGCTCTAATCTATATGGAGTGAGTAGGTAGGTGAGTGAGTA
ACCGGGGTCCTATAGAGAATTGGGAGAATTGGGGCCCTATATCTTATCTTAAGATAGTTGGGGGC
CATCTATCTATATCTATATACGAAGTAGTGATATCAATGTGCCCAGACTAGACTCTAGAGGGGAG
GGGCCATGTAGATTAGATCTCTATCTATCCATCTATGGCCAGGCCAGGTAGATAGAGATCTATCT
CTCTATCTATCCATCTGGGTTGGCTAGATATAGAGGCCGGGGAGA
Right flanking sequence: Indices 42535 -- 43034
ATAGAATAGTGGGCCGGGTTGGTCTAGTCAGATGAAGGGGTGCGTCCTCCCCCCCACCTATATCT
CCGGGGATAGGGGAGCCGTGCATTAGCCCACCCCCCCTTTCAATCCAGTGGAGTGGGGTGGGGCC
AATTAAACTATACTCTCTCTATTTAGGTCTCTCTACTCTCCTAGACACATGAGAGATAGAGATAG
GGCATATAGAATAGAGATACAGACTATCATCAAAGCAGCAGACATGTATTACATACTCTGGGGAG
TGGCCAGACCAGACTCTATAGGGCTTTGGCCAAAGCAGACCAGGGGGACCAGACGAATAGATGGG
AGGGAGGGCCAGATCTATAGATTATCTCTCTATATCTCTCTCTCTCTCTAGATTCTCTATCTATC
CATCTCTCTATCCAGATGAAGGACTACGCCCTCCCCAATATAGAGCAGAGTTTTTTGGCCTGGCC
AATATAGACTTCCCGAAGGGGGAGAGGGGAGCCGGCATTGATCTC
Found at i:42539 original size:19 final size:19
Alignment explanation
Indices: 42515--42553 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
42505 CGGGTTGGGA
*
42515 TATAGAGTAGAGGGCCGGG
1 TATAGAATAGAGGGCCGGG
*
42534 TATAGAATAGTGGGCCGGG
1 TATAGAATAGAGGGCCGGG
42553 T
1 T
42554 TGGTCTAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.10, G:0.44, T:0.21
Consensus pattern (19 bp):
TATAGAATAGAGGGCCGGG
Left flanking sequence: Indices 42015 -- 42514
TATATCTATAGATCTCTATATAGATCTATATCTCCCCTATGACTTTCTATAGTGGCCCCCTATCT
AGATCTCTTCCCTATCTCCCTATCGGCCGGCCAACCCGAAACCCACCGCCAATTGAATTGATAAT
AGTCTCGTCTCCATATCTTGCCTTCCGGGCCTCTCTCTATATCTCTCTCTAGATCTTGCTCTAAT
CTATATGGAGTGAGTAGGTAGGTGAGTGAGTAACCGGGGTCCTATAGAGAATTGGGAGAATTGGG
GCCCTATATCTTATCTTAAGATAGTTGGGGGCCATCTATCTATATCTATATACGAAGTAGTGATA
TCAATGTGCCCAGACTAGACTCTAGAGGGGAGGGGCCATGTAGATTAGATCTCTATCTATCCATC
TATGGCCAGGCCAGGTAGATAGAGATCTATCTCTCTATCTATCCATCTGGGTTGGCTAGATATAG
AGGCCGGGGAGAGTTGGCGATATAGAGTAGAGGGCCGGGTTGGGA
Right flanking sequence: Indices 42554 -- 43053
TGGTCTAGTCAGATGAAGGGGTGCGTCCTCCCCCCCACCTATATCTCCGGGGATAGGGGAGCCGT
GCATTAGCCCACCCCCCCTTTCAATCCAGTGGAGTGGGGTGGGGCCAATTAAACTATACTCTCTC
TATTTAGGTCTCTCTACTCTCCTAGACACATGAGAGATAGAGATAGGGCATATAGAATAGAGATA
CAGACTATCATCAAAGCAGCAGACATGTATTACATACTCTGGGGAGTGGCCAGACCAGACTCTAT
AGGGCTTTGGCCAAAGCAGACCAGGGGGACCAGACGAATAGATGGGAGGGAGGGCCAGATCTATA
GATTATCTCTCTATATCTCTCTCTCTCTCTAGATTCTCTATCTATCCATCTCTCTATCCAGATGA
AGGACTACGCCCTCCCCAATATAGAGCAGAGTTTTTTGGCCTGGCCAATATAGACTTCCCGAAGG
GGGAGAGGGGAGCCGGCATTGATCTCCATCCACGGGAGGGTGGAT
Found at i:43476 original size:27 final size:28
Alignment explanation
Indices: 43418--43477 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
43408 CAGATAGAAT
*
43418 ATAGGGGGGGGGCCGAGATAGAGATCGA
1 ATAGAGGGGGGGCCGAGATAGAGATCGA
* **
43446 ATAGAGGGGGGTCCGATCTAGAGATCG-
1 ATAGAGGGGGGGCCGAGATAGAGATCGA
43473 ATAGA
1 ATAGA
43478 TCTATGGCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.30, C:0.12, G:0.43, T:0.15
Consensus pattern (28 bp):
ATAGAGGGGGGGCCGAGATAGAGATCGA
Left flanking sequence: Indices 42918 -- 43417
ATCTATCCATCTCTCTATCCAGATGAAGGACTACGCCCTCCCCAATATAGAGCAGAGTTTTTTGG
CCTGGCCAATATAGACTTCCCGAAGGGGGAGAGGGGAGCCGGCATTGATCTCCATCCACGGGAGG
GTGGATTGGATACCACGGGATACCACGGGTGGATACACGGGTGCCCATCTATCCACGGGATACCA
CGGGGATCTCTATCCACGGGATACCACGGGTGGCCATCTATATCTATCCACGGGTGGCTGGTGTT
GGTTGGGATCTAGAGTAGAGGGTTTGGTTGGTCAATATATAGATATGGGGGGGCTCTAGAGGGGA
GCGGCTCGAGGGGAGGGATCTAGAGGGTTGGGATCTATCTATCTCTCTATGGCCAGGCCTATATA
TCTATCTGGGCTCTCTCTATCCAGCTCCGATATAGATATAGAGATAGAGGGGGCCCGACATCGAG
ATGAGGGAGTGCCGAGAGATAGATAGAGATCTGATCAGATAGAAT
Right flanking sequence: Indices 43478 -- 43977
TCTATGGCCATGCCCCAGATAATGCTAGATACAGTAGAGCAGTGGCCAGATCTCTATAGACTAAT
AGAGACGGAGTGGTCGGCTCATCAGTGTGTTCTCGGGTGTCGGCTTCTCAGAGTGGTCGCCTCCT
CAGTGTGTTCTCCTCATCAGTAGCCCCCCCCTATATATAGATTAGATTCTAGATATGGCCCATAT
CTGATCAGTAGCTTAGCTAGCCATAGAGATTAGTAGCTAGCCCTAGCCATAGAGATTCTCGGGTG
GTCGGCTTATCAGAAGAGGGGGTCTTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTCTTCTCGG
GTGGTCGGCTTATCTATATCCTCTAGCCGGTGGGGTCGCCCCCCCCCCCCTCGTTTGGAGTTAGC
GGGGTGCCCGGTCCCCTTCCCCCTATTCTCTATCCTTCCCACTCATACCTACATACAACTCTATC
CACCCCACTCATCCACAGATACAACTCATCTCGTACAGACAACTC
Found at i:43771 original size:34 final size:34
Alignment explanation
Indices: 43728--43816 Score: 178
Period size: 34 Copynumber: 2.6 Consensus size: 34
43718 GCCATAGAGA
43728 TTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTC
1 TTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTC
43762 TTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTC
1 TTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTC
43796 TTCTCGGGTGGTCGGCTTATC
1 TTCTCGGGTGGTCGGCTTATC
43817 TATATCCTCT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.12, C:0.19, G:0.39, T:0.29
Consensus pattern (34 bp):
TTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTC
Left flanking sequence: Indices 43228 -- 43727
GGGCTCTAGAGGGGAGCGGCTCGAGGGGAGGGATCTAGAGGGTTGGGATCTATCTATCTCTCTAT
GGCCAGGCCTATATATCTATCTGGGCTCTCTCTATCCAGCTCCGATATAGATATAGAGATAGAGG
GGGCCCGACATCGAGATGAGGGAGTGCCGAGAGATAGATAGAGATCTGATCAGATAGAATATAGG
GGGGGGGCCGAGATAGAGATCGAATAGAGGGGGGTCCGATCTAGAGATCGATAGATCTATGGCCA
TGCCCCAGATAATGCTAGATACAGTAGAGCAGTGGCCAGATCTCTATAGACTAATAGAGACGGAG
TGGTCGGCTCATCAGTGTGTTCTCGGGTGTCGGCTTCTCAGAGTGGTCGCCTCCTCAGTGTGTTC
TCCTCATCAGTAGCCCCCCCCTATATATAGATTAGATTCTAGATATGGCCCATATCTGATCAGTA
GCTTAGCTAGCCATAGAGATTAGTAGCTAGCCCTAGCCATAGAGA
Right flanking sequence: Indices 43817 -- 44316
TATATCCTCTAGCCGGTGGGGTCGCCCCCCCCCCCCTCGTTTGGAGTTAGCGGGGTGCCCGGTCC
CCTTCCCCCTATTCTCTATCCTTCCCACTCATACCTACATACAACTCTATCCACCCCACTCATCC
ACAGATACAACTCATCTCGTACAGACAACTCATCTATCCACAGATAGCATCTCGAGGGGAGAGAA
AGAGTCCCTCTAGCTCATCCTTAGGGGAGAGAAAGAGTCCCTCTAGAGGCGCCAATATATAGATA
TGGGCAACCGGGTTCGGTTCGGATCTAGAGGGTTGGCTCACTACCAACCGGGGTTGCATCGGGCC
AGGGCCGGGTTTGCACCAGGCCAGGGCCGGGTTGGGTTCGCCATATCTATATAGAGGGGAGGGGA
GGCGCCAACCCAACCTCTATCTATCTCTCTATCTATCTATATAGAGATGAGATGGCGACGGCCTA
CTCTATATGGATATGGACCAATGACTGTGACTGGTTGTATCACTC
Found at i:44155 original size:22 final size:22
Alignment explanation
Indices: 44124--44174 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
44114 TCACTACCAA
* * *
44124 CCGGGGTTGCATCGGGCCAGGG
1 CCGGGTTTGCACCAGGCCAGGG
44146 CCGGGTTTGCACCAGGCCAGGG
1 CCGGGTTTGCACCAGGCCAGGG
44168 CCGGGTT
1 CCGGGTT
44175 GGGTTCGCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.10, C:0.29, G:0.45, T:0.16
Consensus pattern (22 bp):
CCGGGTTTGCACCAGGCCAGGG
Left flanking sequence: Indices 43624 -- 44123
TCAGTAGCCCCCCCCTATATATAGATTAGATTCTAGATATGGCCCATATCTGATCAGTAGCTTAG
CTAGCCATAGAGATTAGTAGCTAGCCCTAGCCATAGAGATTCTCGGGTGGTCGGCTTATCAGAAG
AGGGGGTCTTCTCGGGTGGTCGGCTTATCAGAAGAGGGGGTCTTCTCGGGTGGTCGGCTTATCTA
TATCCTCTAGCCGGTGGGGTCGCCCCCCCCCCCCTCGTTTGGAGTTAGCGGGGTGCCCGGTCCCC
TTCCCCCTATTCTCTATCCTTCCCACTCATACCTACATACAACTCTATCCACCCCACTCATCCAC
AGATACAACTCATCTCGTACAGACAACTCATCTATCCACAGATAGCATCTCGAGGGGAGAGAAAG
AGTCCCTCTAGCTCATCCTTAGGGGAGAGAAAGAGTCCCTCTAGAGGCGCCAATATATAGATATG
GGCAACCGGGTTCGGTTCGGATCTAGAGGGTTGGCTCACTACCAA
Right flanking sequence: Indices 44175 -- 44674
GGGTTCGCCATATCTATATAGAGGGGAGGGGAGGCGCCAACCCAACCTCTATCTATCTCTCTATC
TATCTATATAGAGATGAGATGGCGACGGCCTACTCTATATGGATATGGACCAATGACTGTGACTG
GTTGTATCACTCCTTTGGATATAGAGAATGGCGGATAGAATGGATGCATCCATGCTAGATATGTG
TATGTGGTGAGATATAGATATATGGCCGCCCCTATCTATTCTATCTGCACTCGGTGGGCATCCAT
GTCTGTGGTGCCCGACCGCCCCAGATTTGATGCTCCCCCTATAGATAGATAGATAGATAGATATG
GGATAGACCCCCTATCACACCACAGCGATCTAAGCTGAGATCAAACCCTCGCCCTCCTCTCGAGA
GATATAGGGTAGTCGAGTGCCGGGGGCCCTCCTCTCTTCTCGATAGCCAGATAGATCAGATCTAT
AGGGTGGGGGCGGGGGTAGGGGCGGGGCCTATCTGATCTAGAATC
Found at i:45129 original size:5 final size:5
Alignment explanation
Indices: 45121--45159 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
45111 GACCGACATA
45121 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGG
1 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGG
45160 TGGGCACGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (5 bp):
TAGGG
Left flanking sequence: Indices 44621 -- 45120
CAGATCTATAGGGTGGGGGCGGGGGTAGGGGCGGGGCCTATCTGATCTAGAATCTAACGCCCTAT
CTAGACTCGACTCTATATGGTGCGGTGCGCCCTGTATAGATCTATATGGCGACAACTCTCTAGAG
TTCTAGTTGGGGGAGGTCGGGGAGGGCGACTATCTATATGCGCTCGACCGCCCCCCTCCTCCTCC
CAGATAGATCTATATCTATATGGCGACGGCCTACTCTATATAGCCGAGGCCCTATCTGAACGGAA
GCTCTATACTCTCTATTCTAGACTATAGAGTAGGAGTAGGCGCTCGACCCCCTCGACCCTATAGA
TTCTATCCATCTGGAGAGAATATCATCTCATCAGTAGGCTCAATCGAGGGGAGGGCGCCGCTAGT
CGAGCGATAGATATAGGGCCCCATAGAGAGATAGGGATAGGGGGCCAACTAGAGAGAGTCGCCCC
AGAACTAACTAGAACTGTCGCCATATAGACAAGACGACCGACATA
Right flanking sequence: Indices 45160 -- 45659
TGGGCACGAAAGAGGCATAGGGATAGGGAGATACTCTATATGGGCCCTACCCTACTCTATATAGC
TATGTTTCTACTCTATTATGTTTCCGGCACCTATATTCTATGCGAGGTGCCCCCGAGAGTTCTAT
AACTCGAGATCTAATCAGAATGGAATGAAAATAGAATCTTCATTTACCCCCGATCCGAGTGAGTG
CCAGTGCCCCCTATATATAGATATGGCGAGTCGGTCGAGTGTGATAGGGGGTGAGCGGCGCCCCG
TAGATATATAGGCTCCCTATCTCCTATCTCGGGATGATATATGGATGATTGATGATTCTCCGCCT
ATCTATATATATGGCCCTCCGCCGGCGAGTGAGAGATATATATAGATTCGCATAACTCCGCTCCG
AAGAAAGATATATAGTTGTATTCTCCGTTCGTCTCGGGTGGCAGGCAACAATCTTTAGTACCATC
AATCTTTAGTACCAATATATAGATATTAGAGTGCCCCCCCCTATC
Found at i:45619 original size:16 final size:16
Alignment explanation
Indices: 45598--45628 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45588 TGGCAGGCAA
45598 CAATCTTTAGTACCAT
1 CAATCTTTAGTACCAT
45614 CAATCTTTAGTACCA
1 CAATCTTTAGTACCA
45629 ATATATAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (16 bp):
CAATCTTTAGTACCAT
Left flanking sequence: Indices 45098 -- 45597
ATATAGACAAGACGACCGACATATAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGTGG
GCACGAAAGAGGCATAGGGATAGGGAGATACTCTATATGGGCCCTACCCTACTCTATATAGCTAT
GTTTCTACTCTATTATGTTTCCGGCACCTATATTCTATGCGAGGTGCCCCCGAGAGTTCTATAAC
TCGAGATCTAATCAGAATGGAATGAAAATAGAATCTTCATTTACCCCCGATCCGAGTGAGTGCCA
GTGCCCCCTATATATAGATATGGCGAGTCGGTCGAGTGTGATAGGGGGTGAGCGGCGCCCCGTAG
ATATATAGGCTCCCTATCTCCTATCTCGGGATGATATATGGATGATTGATGATTCTCCGCCTATC
TATATATATGGCCCTCCGCCGGCGAGTGAGAGATATATATAGATTCGCATAACTCCGCTCCGAAG
AAAGATATATAGTTGTATTCTCCGTTCGTCTCGGGTGGCAGGCAA
Right flanking sequence: Indices 45629 -- 46128
ATATATAGATATTAGAGTGCCCCCCCCTATCTATATATGGGGCCGGCATTTATCAGTTATCTAGA
TATAGGGCGAGAGGTCCCTATCGATATATGGCACTGGGGGGCCACCTATCAATCCCCTATCGGCC
CTATCCCCTATCTAGAGTTCGGATGGTCAGGGGAATCTATATAGATCTCCCTATCCCCTATCTAT
CTAACGGATGGCACGGGGGATAGGATATCTTTCATTTCACGGGGGGTCCCCGTTCGGATGGCACG
GGGGAGCCCCTATCTATATAAGCCTTCTGGGGTATTGGCAGAGGCCTTCTATAGAACTATATAGC
TCTACCTGGGAGGCAGAGATAGCTGGAGGGGTGGGTGGGCCTCCCATATCTCTATATAGGGGAGG
GGGCGACTCTCTCTAGTTGGGAGAACTATAGATAGGGGGGCCGACGGAAAAATTGTAGGGCTCCA
CTCCATATAGCCTATGCTCGGGAGGCCGGGGGCCTATCTATAGAT
Found at i:46199 original size:12 final size:12
Alignment explanation
Indices: 46182--46207 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46172 GATCCCCCTC
46182 TATATATATAGA
1 TATATATATAGA
46194 TATATATATAGA
1 TATATATATAGA
46206 TA
1 TA
46208 GAATCTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
TATATATATAGA
Left flanking sequence: Indices 45682 -- 46181
CAGTTATCTAGATATAGGGCGAGAGGTCCCTATCGATATATGGCACTGGGGGGCCACCTATCAAT
CCCCTATCGGCCCTATCCCCTATCTAGAGTTCGGATGGTCAGGGGAATCTATATAGATCTCCCTA
TCCCCTATCTATCTAACGGATGGCACGGGGGATAGGATATCTTTCATTTCACGGGGGGTCCCCGT
TCGGATGGCACGGGGGAGCCCCTATCTATATAAGCCTTCTGGGGTATTGGCAGAGGCCTTCTATA
GAACTATATAGCTCTACCTGGGAGGCAGAGATAGCTGGAGGGGTGGGTGGGCCTCCCATATCTCT
ATATAGGGGAGGGGGCGACTCTCTCTAGTTGGGAGAACTATAGATAGGGGGGCCGACGGAAAAAT
TGTAGGGCTCCACTCCATATAGCCTATGCTCGGGAGGCCGGGGGCCTATCTATAGATATGGCTCT
CCCTCAGTCATCAGTCATATCACGTATAGAATAGTGATCCCCCTC
Right flanking sequence: Indices 46208 -- 46707
GAATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTATCCGCCGCCAGATATATATCTAT
ATAGGCCGCCGATCTCCCACCCAGATCTATATATAGGCCGCCGATCTATATAGATATCCTAGCCA
GATCTATATCTATATAGGCAGAGCAGAGCTAGGAAAGGAAGGAACCCCACCCTCACCACCTCCCC
TCCTCCCTTTATTCTGGTTAGGCAGGGTTGCTTCCTTTCCTTGATATATATCTATATATATCTAT
ATAGGGGAGGGGCACCGGACAGACATATTACGTATAGAATCAGGGGCCCCTCTCGAATATTGTCT
TGTGTTGTCTTGTTCTGGGGTTCATCACTAACAATATCCCCACCTGCCTAACCACACAAGCTGAT
GGTATATGGGCCTCCCCTTCCGAGCCTATATCTATCTGGCTGGTATGGGGTGCCCCCCCGCCCCT
ATACTTATTCGAGTATATAGAGGGGGAGGGGGGTTAGGGTGGGTT
Found at i:46220 original size:5 final size:5
Alignment explanation
Indices: 46210--46248 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
46200 TATAGATAGA
46210 ATCTT ATCTT ATCTT ATCTT ATCTT ATCTT ATCTT ATCT
1 ATCTT ATCTT ATCTT ATCTT ATCTT ATCTT ATCTT ATCT
46249 ATCCGCCGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.59
Consensus pattern (5 bp):
ATCTT
Left flanking sequence: Indices 45710 -- 46209
CCTATCGATATATGGCACTGGGGGGCCACCTATCAATCCCCTATCGGCCCTATCCCCTATCTAGA
GTTCGGATGGTCAGGGGAATCTATATAGATCTCCCTATCCCCTATCTATCTAACGGATGGCACGG
GGGATAGGATATCTTTCATTTCACGGGGGGTCCCCGTTCGGATGGCACGGGGGAGCCCCTATCTA
TATAAGCCTTCTGGGGTATTGGCAGAGGCCTTCTATAGAACTATATAGCTCTACCTGGGAGGCAG
AGATAGCTGGAGGGGTGGGTGGGCCTCCCATATCTCTATATAGGGGAGGGGGCGACTCTCTCTAG
TTGGGAGAACTATAGATAGGGGGGCCGACGGAAAAATTGTAGGGCTCCACTCCATATAGCCTATG
CTCGGGAGGCCGGGGGCCTATCTATAGATATGGCTCTCCCTCAGTCATCAGTCATATCACGTATA
GAATAGTGATCCCCCTCTATATATATAGATATATATATAGATAGA
Right flanking sequence: Indices 46249 -- 46748
ATCCGCCGCCAGATATATATCTATATAGGCCGCCGATCTCCCACCCAGATCTATATATAGGCCGC
CGATCTATATAGATATCCTAGCCAGATCTATATCTATATAGGCAGAGCAGAGCTAGGAAAGGAAG
GAACCCCACCCTCACCACCTCCCCTCCTCCCTTTATTCTGGTTAGGCAGGGTTGCTTCCTTTCCT
TGATATATATCTATATATATCTATATAGGGGAGGGGCACCGGACAGACATATTACGTATAGAATC
AGGGGCCCCTCTCGAATATTGTCTTGTGTTGTCTTGTTCTGGGGTTCATCACTAACAATATCCCC
ACCTGCCTAACCACACAAGCTGATGGTATATGGGCCTCCCCTTCCGAGCCTATATCTATCTGGCT
GGTATGGGGTGCCCCCCCGCCCCTATACTTATTCGAGTATATAGAGGGGGAGGGGGGTTAGGGTG
GGTTTGTTATTGCCCCTCCTCACCGACCCGAGTTCTGGGGAGGCC
Found at i:46461 original size:10 final size:10
Alignment explanation
Indices: 46446--46470 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
46436 CCTTTCCTTG
46446 ATATATATCT
1 ATATATATCT
46456 ATATATATCT
1 ATATATATCT
46466 ATATA
1 ATATA
46471 GGGGAGGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATATATATCT
Left flanking sequence: Indices 45946 -- 46445
TATATAGCTCTACCTGGGAGGCAGAGATAGCTGGAGGGGTGGGTGGGCCTCCCATATCTCTATAT
AGGGGAGGGGGCGACTCTCTCTAGTTGGGAGAACTATAGATAGGGGGGCCGACGGAAAAATTGTA
GGGCTCCACTCCATATAGCCTATGCTCGGGAGGCCGGGGGCCTATCTATAGATATGGCTCTCCCT
CAGTCATCAGTCATATCACGTATAGAATAGTGATCCCCCTCTATATATATAGATATATATATAGA
TAGAATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTATCCGCCGCCAGATATATATCT
ATATAGGCCGCCGATCTCCCACCCAGATCTATATATAGGCCGCCGATCTATATAGATATCCTAGC
CAGATCTATATCTATATAGGCAGAGCAGAGCTAGGAAAGGAAGGAACCCCACCCTCACCACCTCC
CCTCCTCCCTTTATTCTGGTTAGGCAGGGTTGCTTCCTTTCCTTG
Right flanking sequence: Indices 46471 -- 46970
GGGGAGGGGCACCGGACAGACATATTACGTATAGAATCAGGGGCCCCTCTCGAATATTGTCTTGT
GTTGTCTTGTTCTGGGGTTCATCACTAACAATATCCCCACCTGCCTAACCACACAAGCTGATGGT
ATATGGGCCTCCCCTTCCGAGCCTATATCTATCTGGCTGGTATGGGGTGCCCCCCCGCCCCTATA
CTTATTCGAGTATATAGAGGGGGAGGGGGGTTAGGGTGGGTTTGTTATTGCCCCTCCTCACCGAC
CCGAGTTCTGGGGAGGCCCTATATCTCTATATCTCAGGAAGCCCTCCTCGTCTTGTGTTGTGTTG
TCTTGTCCTGGGCCCCATAGAATCTATAGATAGGTGATGGGTTGCCGCCTTTCTCGTCCGTCCTT
TAAATAGAGATCTGAGAAAGGGTAGGTGGTGCGCACCCGGGGGTGCCTCCCCTATATGCCTTGCT
TGCCTCAGAGTGCCTCCCCGGAGAGAAATCTATATCTATATATAT
Found at i:48337 original size:28 final size:28
Alignment explanation
Indices: 48305--48359 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
48295 CGAGGTGTCT
48305 GGGTGTCTCATCTCATACCAATCAGTCC
1 GGGTGTCTCATCTCATACCAATCAGTCC
*
48333 GGGTGTCTCATCTCATACCGATCAGTC
1 GGGTGTCTCATCTCATACCAATCAGTC
48360 TGGTCATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.31, G:0.20, T:0.29
Consensus pattern (28 bp):
GGGTGTCTCATCTCATACCAATCAGTCC
Left flanking sequence: Indices 47805 -- 48304
TGGATCAAGTGTAGTTGGATGGCCGGATCCGGGTCCGGCTCGGGTCCATATATCTATATCTCTGG
ACAAAGCTCCTGCAGAGGGAGAAGCTCCCAGCGGGTCTCCATGCCCTATCTATATCTTATCTCTG
ATACACCGACCATGAATGAAATGGCGAAGGACCCAGACGCCCTATATATCATATATCTGGGATTG
GCCACGGCCACAGATCTAGTTGGCATTAAGAGGCCCCATTGTTTCATGCGTTAGCTGGGAAATAG
AAATCTATAGGGCGGGAATGGACTGTATCACTTCACTATAGTATGGCAGTATGGCATCACTATGG
TATAGGACCAATCTATATAGGGGCGGGCCCCCATAGAGAAGAACTATAGAGAGGGGGGGCTCCCC
ATAGAGATCTAGGGGGCACCATCACCATAGAATCTATGGGCCCCCCCATATCAAAAGAGGGGAGG
GGAGTATGGTAGGTTGGGTTGGGTTGATTCAATGCCGAGGTGTCT
Right flanking sequence: Indices 48360 -- 48859
TGGTCATAGGTTGGTCCAATCATAGTGGGTGATGGAATAGGTGTCCCAATCATGGGTTGGTCCCT
ATCTAGAACTATAAGATAGGAAGGGGTGGGGGATAGATATATAGGTATCGGGGAGCGGCCCCTAT
CTGAACTATTCTATGGGGGGTTGAAGCGGTCAGCACCTAACCCATATACATATCCCTATCTAGAC
TCTATATGGCGGCCCCTATCTATATACGGCGGCCCCTATATCAATCACATAAGCCGGATCGGATG
CTTGCCCCCCCTCTCTATATCTATTCCATATGGCGATATCTATTCCATATGGCGCGGGGGAGAGC
CTAGATCTACATCTATAGTTTGGGCGGGGGCCCCATATAGATCTAGTATATGGTATGGATAGGGC
GATCGATCGATGCTCTTTCTTCTCTCTCGGATCGATAAGATAGAATAGAATAGAATAGGGAGGGG
GGAGGGCCGGTTGATCGATCGACGAGATGCCATCACCGGTTGGCC
Found at i:48578 original size:18 final size:19
Alignment explanation
Indices: 48555--48593 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
48545 CTATCTAGAC
48555 TCTATAT-GGCGGCCCCTA
1 TCTATATAGGCGGCCCCTA
48573 TCTATATACGGCGGCCCCTA
1 TCTATATA-GGCGGCCCCTA
48593 T
1 T
48594 ATCAATCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.18, C:0.33, G:0.21, T:0.28
Consensus pattern (19 bp):
TCTATATAGGCGGCCCCTA
Left flanking sequence: Indices 48055 -- 48554
TGGGAAATAGAAATCTATAGGGCGGGAATGGACTGTATCACTTCACTATAGTATGGCAGTATGGC
ATCACTATGGTATAGGACCAATCTATATAGGGGCGGGCCCCCATAGAGAAGAACTATAGAGAGGG
GGGGCTCCCCATAGAGATCTAGGGGGCACCATCACCATAGAATCTATGGGCCCCCCCATATCAAA
AGAGGGGAGGGGAGTATGGTAGGTTGGGTTGGGTTGATTCAATGCCGAGGTGTCTGGGTGTCTCA
TCTCATACCAATCAGTCCGGGTGTCTCATCTCATACCGATCAGTCTGGTCATAGGTTGGTCCAAT
CATAGTGGGTGATGGAATAGGTGTCCCAATCATGGGTTGGTCCCTATCTAGAACTATAAGATAGG
AAGGGGTGGGGGATAGATATATAGGTATCGGGGAGCGGCCCCTATCTGAACTATTCTATGGGGGG
TTGAAGCGGTCAGCACCTAACCCATATACATATCCCTATCTAGAC
Right flanking sequence: Indices 48594 -- 49093
ATCAATCACATAAGCCGGATCGGATGCTTGCCCCCCCTCTCTATATCTATTCCATATGGCGATAT
CTATTCCATATGGCGCGGGGGAGAGCCTAGATCTACATCTATAGTTTGGGCGGGGGCCCCATATA
GATCTAGTATATGGTATGGATAGGGCGATCGATCGATGCTCTTTCTTCTCTCTCGGATCGATAAG
ATAGAATAGAATAGAATAGGGAGGGGGGAGGGCCGGTTGATCGATCGACGAGATGCCATCACCGG
TTGGCCAACAATATATAGATAGGGGCCCCCAGATAGAATCTATTCTATTCTCCCCAGTTCTATAG
AGATACCTCCCCATCCCATTCATATCAAATCAAATCAAATCAATAGGGGTCGGCCCGGGGAGAAC
AATCAATTTAGAGGGGTTCTATGGGCCCCCCTATCTCCCGGCTCTCTATGGCCCCATATATAGAT
AGGCCTCCCGCCATATAGAGATAGGGCCCCCTCCCCCTACCCCTC
Found at i:48660 original size:19 final size:19
Alignment explanation
Indices: 48636--48673 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
48626 CCCCCTCTCT
48636 ATATCTATTCCATATGGCG
1 ATATCTATTCCATATGGCG
48655 ATATCTATTCCATATGGCG
1 ATATCTATTCCATATGGCG
48674 CGGGGGAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
ATATCTATTCCATATGGCG
Left flanking sequence: Indices 48136 -- 48635
ACCAATCTATATAGGGGCGGGCCCCCATAGAGAAGAACTATAGAGAGGGGGGGCTCCCCATAGAG
ATCTAGGGGGCACCATCACCATAGAATCTATGGGCCCCCCCATATCAAAAGAGGGGAGGGGAGTA
TGGTAGGTTGGGTTGGGTTGATTCAATGCCGAGGTGTCTGGGTGTCTCATCTCATACCAATCAGT
CCGGGTGTCTCATCTCATACCGATCAGTCTGGTCATAGGTTGGTCCAATCATAGTGGGTGATGGA
ATAGGTGTCCCAATCATGGGTTGGTCCCTATCTAGAACTATAAGATAGGAAGGGGTGGGGGATAG
ATATATAGGTATCGGGGAGCGGCCCCTATCTGAACTATTCTATGGGGGGTTGAAGCGGTCAGCAC
CTAACCCATATACATATCCCTATCTAGACTCTATATGGCGGCCCCTATCTATATACGGCGGCCCC
TATATCAATCACATAAGCCGGATCGGATGCTTGCCCCCCCTCTCT
Right flanking sequence: Indices 48674 -- 49173
CGGGGGAGAGCCTAGATCTACATCTATAGTTTGGGCGGGGGCCCCATATAGATCTAGTATATGGT
ATGGATAGGGCGATCGATCGATGCTCTTTCTTCTCTCTCGGATCGATAAGATAGAATAGAATAGA
ATAGGGAGGGGGGAGGGCCGGTTGATCGATCGACGAGATGCCATCACCGGTTGGCCAACAATATA
TAGATAGGGGCCCCCAGATAGAATCTATTCTATTCTCCCCAGTTCTATAGAGATACCTCCCCATC
CCATTCATATCAAATCAAATCAAATCAATAGGGGTCGGCCCGGGGAGAACAATCAATTTAGAGGG
GTTCTATGGGCCCCCCTATCTCCCGGCTCTCTATGGCCCCATATATAGATAGGCCTCCCGCCATA
TAGAGATAGGGCCCCCTCCCCCTACCCCTCCCCCTCTATATAGATCACGAAAGGGCAGCTATATC
TATAGGGGGGCAGCTATCTAGATAGGGGGCCCCCCTTCTCTATAT
Found at i:49153 original size:20 final size:20
Alignment explanation
Indices: 49116--49157 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49106 GATCACGAAA
**
49116 GGGCAGCTATATCTATAGGG
1 GGGCAGCTATATAGATAGGG
*
49136 GGGCAGCTATCTAGATAGGG
1 GGGCAGCTATATAGATAGGG
49156 GG
1 GG
49158 CCCCCCTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.14, G:0.40, T:0.21
Consensus pattern (20 bp):
GGGCAGCTATATAGATAGGG
Left flanking sequence: Indices 48616 -- 49115
GATGCTTGCCCCCCCTCTCTATATCTATTCCATATGGCGATATCTATTCCATATGGCGCGGGGGA
GAGCCTAGATCTACATCTATAGTTTGGGCGGGGGCCCCATATAGATCTAGTATATGGTATGGATA
GGGCGATCGATCGATGCTCTTTCTTCTCTCTCGGATCGATAAGATAGAATAGAATAGAATAGGGA
GGGGGGAGGGCCGGTTGATCGATCGACGAGATGCCATCACCGGTTGGCCAACAATATATAGATAG
GGGCCCCCAGATAGAATCTATTCTATTCTCCCCAGTTCTATAGAGATACCTCCCCATCCCATTCA
TATCAAATCAAATCAAATCAATAGGGGTCGGCCCGGGGAGAACAATCAATTTAGAGGGGTTCTAT
GGGCCCCCCTATCTCCCGGCTCTCTATGGCCCCATATATAGATAGGCCTCCCGCCATATAGAGAT
AGGGCCCCCTCCCCCTACCCCTCCCCCTCTATATAGATCACGAAA
Right flanking sequence: Indices 49158 -- 49657
CCCCCCTTCTCTATATAGGGGTGGGGGCCCCCGGGCCTCATTGCCCCCATTCTCTATATAGACTC
CCGCCCAGCATAGGGCCCTGGCTATAGATTCTCCCTCGTTCTCGAGCCCCGTATATGGATAGGGG
CCAGACAGTCGGGTGGGCGCTCTCTATCCTTTCTCTAGAATAGAGAGAGAGGGGGGGCGGGGGCC
CGATAGGGCCGCCGATATAGAATATAGCTGCCCCCAGATAGATAAGATAGTTCAGGGAGGGGGCC
CCGGCGATTGGAGTAGGCCGCCCTATCTGTATATATGCCTATCTAGTTCTACCTTCCCGTCCTCC
TCCCCCTCCAGATAGTTCAGGGGCGGGGGAGTTCCTCAACCTATGGCCTATCGGTCCATATCCCA
TATCTAGATAGAGGGAGAGGGGAGGGTGCCCCATAGTTCAGATATAGGGGGCCGACTAGATATAG
CTGCCTCCCCCTGCAGTGCAGGAATCGGTCGGGGGAGTGCCGACT
Found at i:51122 original size:21 final size:21
Alignment explanation
Indices: 51096--51135 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
51086 CTTTGTCGTG
51096 TCCTAAGGACATAAGGTACAA
1 TCCTAAGGACATAAGGTACAA
51117 TCCTAAGGACATAAGGTAC
1 TCCTAAGGACATAAGGTAC
51136 TTCGTCCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
TCCTAAGGACATAAGGTACAA
Left flanking sequence: Indices 50596 -- 51095
GGGTTGGGTTTCTAATCTCTGATCTAGTTGTTTCATCCCACCTAGATCAGAGATTAGAAACCCAA
CCCTCGACTGATGCTAGATATAGGTGGAGCATCCCCCCTAGATATATGGTCCTAGATCAGATCAT
ATCTGATTATATACGTGATACAACTGATATCAATCATGGGAGATAGATGAAACAGATATGGGATA
TGGGATCAGATCAGATTCATTATATAATATACGCGACTGATGCTAGAAGAACTCTTATATAGAAT
TCAATTTATAGGAGAGGGTGGAGCCCTCTATACTCTATAAGTGGAGGCCAGATCAATATAGAGAG
AGGGCATATAGAATACAGATCTATCCCAGAGAGATAGAGAGATCAAGCCCAGATCAATATAGAGA
GAGGGCATATAGAATACAGATCTCTAGATTAACACAGAGATGATCGTGGTCCCCCCCCTACCCCT
ATCGGGGTAGACCCCCGTATCAAAACAAAGACCCCCTTTGTCGTG
Right flanking sequence: Indices 51136 -- 51635
TTCGTCCTTCGGACTTCGTACCTTAAGTCCGAAGGACAAGAACAACTAAACACATCTTGATCCTA
TGGACATAAGGTACTTCGTCCGAAGGACTTCGTCCCTTAGGTCCGAAGGACAAGAAAACAAAACC
ATTCGGTTTGTCCTAAGGACCGAAGGGACTTGGGACAACCAAAACAACAAGTCAGTTTCCTTGTT
GTCTCGACACCATAGTCCTTGTTATATTGTCCGAAGTCCCAAAGGGACAATACGAAGTCCCAAAG
GGACAAAGGACAATGAGAACTAAACAAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGAC
TTGGGACAAACAAACGACAACTCCTTAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGACA
ACCGTACCTCATCTTAACGGATCCCCCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTAG
AACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGT
Found at i:51247 original size:79 final size:78
Alignment explanation
Indices: 51116--51264 Score: 226
Period size: 79 Copynumber: 1.9 Consensus size: 78
51106 ATAAGGTACA
***
51116 ATCCTAAGGACATAAGGTACTTCGTCCTTCGGACTTCGTACCTTAAGTCCGAAGGACAAGAACAA
1 ATCCTAAGGACATAAGGTACTTCGTCCGAAGGACTTCGTACCTTAAGTCCGAAGGACAAGAA-AA
*
51181 CTAAACACATCTTG
65 CAAAACACATCTTG
* * *
51195 ATCCTATGGACATAAGGTACTTCGTCCGAAGGACTTCGTCCCTTAGGTCCGAAGGACAAGAAAAC
1 ATCCTAAGGACATAAGGTACTTCGTCCGAAGGACTTCGTACCTTAAGTCCGAAGGACAAGAAAAC
51260 AAAAC
66 AAAAC
51265 CATTCGGTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
78 7 0.11
79 56 0.89
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (78 bp):
ATCCTAAGGACATAAGGTACTTCGTCCGAAGGACTTCGTACCTTAAGTCCGAAGGACAAGAAAAC
AAAACACATCTTG
Left flanking sequence: Indices 50616 -- 51115
GATCTAGTTGTTTCATCCCACCTAGATCAGAGATTAGAAACCCAACCCTCGACTGATGCTAGATA
TAGGTGGAGCATCCCCCCTAGATATATGGTCCTAGATCAGATCATATCTGATTATATACGTGATA
CAACTGATATCAATCATGGGAGATAGATGAAACAGATATGGGATATGGGATCAGATCAGATTCAT
TATATAATATACGCGACTGATGCTAGAAGAACTCTTATATAGAATTCAATTTATAGGAGAGGGTG
GAGCCCTCTATACTCTATAAGTGGAGGCCAGATCAATATAGAGAGAGGGCATATAGAATACAGAT
CTATCCCAGAGAGATAGAGAGATCAAGCCCAGATCAATATAGAGAGAGGGCATATAGAATACAGA
TCTCTAGATTAACACAGAGATGATCGTGGTCCCCCCCCTACCCCTATCGGGGTAGACCCCCGTAT
CAAAACAAAGACCCCCTTTGTCGTGTCCTAAGGACATAAGGTACA
Right flanking sequence: Indices 51265 -- 51764
CATTCGGTTTGTCCTAAGGACCGAAGGGACTTGGGACAACCAAAACAACAAGTCAGTTTCCTTGT
TGTCTCGACACCATAGTCCTTGTTATATTGTCCGAAGTCCCAAAGGGACAATACGAAGTCCCAAA
GGGACAAAGGACAATGAGAACTAAACAAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGA
CTTGGGACAAACAAACGACAACTCCTTAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGAC
AACCGTACCTCATCTTAACGGATCCCCCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTA
GAACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATG
AAAAGACCTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTT
CGCCTCAACCTCGATCTGGTTTCACTCTATTCGAATGGCCCCCCT
Found at i:51386 original size:21 final size:21
Alignment explanation
Indices: 51362--51401 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
51352 TTATATTGTC
51362 CGAAGTCCCAAAGGGACAATA
1 CGAAGTCCCAAAGGGACAATA
51383 CGAAGTCCCAAAGGGACAA
1 CGAAGTCCCAAAGGGACAA
51402 AGGACAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.25, T:0.07
Consensus pattern (21 bp):
CGAAGTCCCAAAGGGACAATA
Left flanking sequence: Indices 50862 -- 51361
TATAGGAGAGGGTGGAGCCCTCTATACTCTATAAGTGGAGGCCAGATCAATATAGAGAGAGGGCA
TATAGAATACAGATCTATCCCAGAGAGATAGAGAGATCAAGCCCAGATCAATATAGAGAGAGGGC
ATATAGAATACAGATCTCTAGATTAACACAGAGATGATCGTGGTCCCCCCCCTACCCCTATCGGG
GTAGACCCCCGTATCAAAACAAAGACCCCCTTTGTCGTGTCCTAAGGACATAAGGTACAATCCTA
AGGACATAAGGTACTTCGTCCTTCGGACTTCGTACCTTAAGTCCGAAGGACAAGAACAACTAAAC
ACATCTTGATCCTATGGACATAAGGTACTTCGTCCGAAGGACTTCGTCCCTTAGGTCCGAAGGAC
AAGAAAACAAAACCATTCGGTTTGTCCTAAGGACCGAAGGGACTTGGGACAACCAAAACAACAAG
TCAGTTTCCTTGTTGTCTCGACACCATAGTCCTTGTTATATTGTC
Right flanking sequence: Indices 51402 -- 51901
AGGACAATGAGAACTAAACAAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGACTTGGGA
CAAACAAACGACAACTCCTTAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGACAACCGTA
CCTCATCTTAACGGATCCCCCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTAGAACAAC
AGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGAC
CTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCA
ACCTCGATCTGGTTTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTC
TCTATTCTCTATCCGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCT
CTATCCGGAGGCCCTCCCCCTCTATCTAGTTCTAGAGTCCCCCCT
Found at i:51825 original size:53 final size:55
Alignment explanation
Indices: 51756--51870 Score: 198
Period size: 53 Copynumber: 2.1 Consensus size: 55
51746 CTATTCGAAT
51756 GGCCCCCCTCCATATCTATCGAGGGCCCCCC-CTCTC-TCTATTCTCTATCCGGA
1 GGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTTCTATTCTCTATCCGGA
51809 GGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGA
1 GGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTC--TTCTATTCTCTATCCGGA
51866 GGCCC
1 GGCCC
51871 TCCCCCTCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
53 31 0.53
54 5 0.09
57 22 0.38
ACGTcount: A:0.13, C:0.44, G:0.16, T:0.27
Consensus pattern (55 bp):
GGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTTCTATTCTCTATCCGGA
Left flanking sequence: Indices 51256 -- 51755
AAACAAAACCATTCGGTTTGTCCTAAGGACCGAAGGGACTTGGGACAACCAAAACAACAAGTCAG
TTTCCTTGTTGTCTCGACACCATAGTCCTTGTTATATTGTCCGAAGTCCCAAAGGGACAATACGA
AGTCCCAAAGGGACAAAGGACAATGAGAACTAAACAAAGTTAACAACTTTTGTTTGTCCTAAGGA
CCGAAGGGACTTGGGACAAACAAACGACAACTCCTTAGTATTGTATTGTCCGAAGTACCGTTGGT
ACGAAGGACAACCGTACCTCATCTTAACGGATCCCCCCCCTAGCCCTATAGGGCTAGACCCCCCT
GGGGGGGTAGAACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTA
CTGTTAATGAAAAGACCTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTT
ATACCAGTTCGCCTCAACCTCGATCTGGTTTCACTCTATTCGAAT
Right flanking sequence: Indices 51871 -- 52370
TCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGCGCCCCCCTCCATCTA
GATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATAGATAGAGGTTCCCTGCCTC
TCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATCTATATCTGGAGGCCCT
CCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATATACAGAAATTGACAAGAATTGTAC
AGAAATTGACATGAATTGACAAGAATTGTACAGAAATTGACATAAATGGTACGGTACGATCTCCC
ATTCTAGATAGAGGGACAGGACAATAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAG
GACAATATCTGTGCAAATCTAGATCTAGATATAGAGATGGGGCGGTATACTCTCTATCTATCTAT
CTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTACAGA
Found at i:51841 original size:23 final size:24
Alignment explanation
Indices: 51758--51839 Score: 78
Period size: 24 Copynumber: 3.2 Consensus size: 24
51748 ATTCGAATGG
51758 CCCCCCTCCATATCTATCGAGGGCC
1 CCCCCCTCCATATCTATCGAGGG-C
*
51783 CCCCCTCTCTCTATTCTCTATCCG-GAGG-
1 CCCCC-CTC-C-A-TATCTAT-CGAG-GGC
51811 CCCCCCTCCATATCTATCGAGGGC
1 CCCCCCTCCATATCTATCGAGGGC
51835 CCCCC
1 CCCCC
51840 TCTCTCTATT
Statistics
Matches: 47, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
23 4 0.09
24 12 0.26
25 6 0.13
26 4 0.09
27 4 0.09
28 6 0.13
29 7 0.15
30 4 0.09
ACGTcount: A:0.13, C:0.49, G:0.15, T:0.23
Consensus pattern (24 bp):
CCCCCCTCCATATCTATCGAGGGC
Left flanking sequence: Indices 51258 -- 51757
ACAAAACCATTCGGTTTGTCCTAAGGACCGAAGGGACTTGGGACAACCAAAACAACAAGTCAGTT
TCCTTGTTGTCTCGACACCATAGTCCTTGTTATATTGTCCGAAGTCCCAAAGGGACAATACGAAG
TCCCAAAGGGACAAAGGACAATGAGAACTAAACAAAGTTAACAACTTTTGTTTGTCCTAAGGACC
GAAGGGACTTGGGACAAACAAACGACAACTCCTTAGTATTGTATTGTCCGAAGTACCGTTGGTAC
GAAGGACAACCGTACCTCATCTTAACGGATCCCCCCCCTAGCCCTATAGGGCTAGACCCCCCTGG
GGGGGTAGAACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACT
GTTAATGAAAAGACCTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTAT
ACCAGTTCGCCTCAACCTCGATCTGGTTTCACTCTATTCGAATGG
Right flanking sequence: Indices 51840 -- 52339
TCTCTCTATTCTATTCTCTATCCGGAGGCCCTCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCC
TCTAGATATAGGGAGCGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATCTAGATAGAGGGCC
CCCCTCCATATAGATAGAGGTTCCCTGCCTCTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCC
CCCCCTCTCTCTATCTATATCTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAGATTGTACA
GAATATATACAGAAATTGACAAGAATTGTACAGAAATTGACATGAATTGACAAGAATTGTACAGA
AATTGACATAAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACG
GTACGATCTCCCATTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAG
AGATGGGGCGGTATACTCTCTATCTATCTATCTAGACCCGGCCCG
Found at i:51935 original size:27 final size:27
Alignment explanation
Indices: 51895--51967 Score: 84
Period size: 23 Copynumber: 2.9 Consensus size: 27
51885 GTTCTAGAGT
51895 CCCCCCTTCC-TCTAGATATAGGGAGCG
1 CCCCCC-TCCATCTAGATATAGGGAGCG
*
51922 CCCCCCTCCATCTAG--ATA--GAGGG
1 CCCCCCTCCATCTAGATATAGGGAGCG
*
51945 CCCCCCTCCATCTAGATAGAGGG
1 CCCCCCTCCATCTAGATATAGGG
51968 CCCCCCTCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
23 19 0.49
25 5 0.13
26 3 0.08
27 12 0.31
ACGTcount: A:0.21, C:0.38, G:0.22, T:0.19
Consensus pattern (27 bp):
CCCCCCTCCATCTAGATATAGGGAGCG
Left flanking sequence: Indices 51395 -- 51894
GGGACAAAGGACAATGAGAACTAAACAAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGA
CTTGGGACAAACAAACGACAACTCCTTAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGAC
AACCGTACCTCATCTTAACGGATCCCCCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTA
GAACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATG
AAAAGACCTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTT
CGCCTCAACCTCGATCTGGTTTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCC
CCCTCTCTCTATTCTCTATCCGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATT
CTATTCTCTATCCGGAGGCCCTCCCCCTCTATCTAGTTCTAGAGT
Right flanking sequence: Indices 51968 -- 52467
CCCCCCTCCATATAGATAGAGGTTCCCTGCCTCTCTATCGAGGGCCCCCTCCATCTAGTTCGAGG
CCCCCCCTCTCTCTATCTATATCTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAGATTGTA
CAGAATATATACAGAAATTGACAAGAATTGTACAGAAATTGACATGAATTGACAAGAATTGTACA
GAAATTGACATAAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTA
CGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATAT
AGAGATGGGGCGGTATACTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGT
TGAATTGTACAGAAATTGACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTT
GCCCTGCAGGATAGCAGGGCTGTCTAGCTGCAACCCGATCCCCAT
Found at i:51947 original size:23 final size:23
Alignment explanation
Indices: 51921--51989 Score: 129
Period size: 23 Copynumber: 3.0 Consensus size: 23
51911 TATAGGGAGC
51921 GCCCCCCTCCATCTAGATAGAGG
1 GCCCCCCTCCATCTAGATAGAGG
51944 GCCCCCCTCCATCTAGATAGAGG
1 GCCCCCCTCCATCTAGATAGAGG
*
51967 GCCCCCCTCCATATAGATAGAGG
1 GCCCCCCTCCATCTAGATAGAGG
51990 TTCCCTGCCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.23, C:0.38, G:0.22, T:0.17
Consensus pattern (23 bp):
GCCCCCCTCCATCTAGATAGAGG
Left flanking sequence: Indices 51421 -- 51920
AAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGACTTGGGACAAACAAACGACAACTCCT
TAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGACAACCGTACCTCATCTTAACGGATCCC
CCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTAGAACAACAGACAAGACGGGGGGGTGT
ATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGACCTGTTGTATCAATAAATAT
AGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCTGGTTTCACT
CTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCTATCCGGAGG
CCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAGGCCCTCCCC
CTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGC
Right flanking sequence: Indices 51990 -- 52489
TTCCCTGCCTCTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATCTATAT
CTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATATACAGAAATTGAC
AAGAATTGTACAGAAATTGACATGAATTGACAAGAATTGTACAGAAATTGACATAAATGGTACGG
TACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGGTACGATCTCCCATTCTAGA
TAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGAGATGGGGCGGTATACTCTC
TATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTACAGAAATTGACAT
AAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGGATAGCAGGGCTG
TCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTA
Found at i:52037 original size:22 final size:22
Alignment explanation
Indices: 51921--52038 Score: 114
Period size: 23 Copynumber: 5.3 Consensus size: 22
51911 TATAGGGAGC
51921 GCCCCCCTCCATCTAGATAGAGG
1 GCCCCCCTCCATCTAGATAGA-G
51944 GCCCCCCTCCATCTAGATAGAGG
1 GCCCCCCTCCATCTAGATAGA-G
*
51967 GCCCCCCTCCATATAGATAGAG
1 GCCCCCCTCCATCTAGATAGAG
** ** *
51989 G-TTCCCTGCC-TCTCTATCGAG
1 GCCCCCCT-CCATCTAGATAGAG
* * *
52010 GGCCCCCTCCATCTAGTTCGAG
1 GCCCCCCTCCATCTAGATAGAG
52032 GCCCCCC
1 GCCCCCC
52039 CTCTCTCTAT
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
21 14 0.18
22 22 0.28
23 43 0.54
ACGTcount: A:0.18, C:0.42, G:0.20, T:0.20
Consensus pattern (22 bp):
GCCCCCCTCCATCTAGATAGAG
Left flanking sequence: Indices 51421 -- 51920
AAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGACTTGGGACAAACAAACGACAACTCCT
TAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGACAACCGTACCTCATCTTAACGGATCCC
CCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTAGAACAACAGACAAGACGGGGGGGTGT
ATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGACCTGTTGTATCAATAAATAT
AGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCTGGTTTCACT
CTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCTATCCGGAGG
CCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAGGCCCTCCCC
CTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGC
Right flanking sequence: Indices 52039 -- 52538
CTCTCTCTATCTATATCTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAAT
ATATACAGAAATTGACAAGAATTGTACAGAAATTGACATGAATTGACAAGAATTGTACAGAAATT
GACATAAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGGTAC
GATCTCCCATTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGAGAT
GGGGCGGTATACTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATT
GTACAGAAATTGACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTG
CAGGATAGCAGGGCTGTCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAGATA
GGGCCTACTCCATTCCAACGGGTCTCGACCCTATCTATGAATCTT
Found at i:52045 original size:43 final size:44
Alignment explanation
Indices: 51921--52049 Score: 129
Period size: 43 Copynumber: 2.9 Consensus size: 44
51911 TATAGGGAGC
* *
51921 GCCCCCCTCCATCTAGATAGAGGGCCCCCCTC-CATCTAGATAGAGG
1 GCCCCCCTCCATCTAGATAGAGGCCCCCCCTCTC-TCT--ATCGAGG
* * **
51967 GCCCCCCTCCATATAGATAGAGGTTCCCTGC-CTCTCTATCGAGG
1 GCCCCCCTCCATCTAGATAGAGG-CCCCCCCTCTCTCTATCGAGG
* *
52011 G-CCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATC
1 GCCCCCCTCCATCTAGATAGAGGCCCCCCCTCTCTCTATC
52050 TATATCTGGA
Statistics
Matches: 69, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
42 4 0.06
43 27 0.39
44 7 0.10
46 26 0.38
47 5 0.07
ACGTcount: A:0.17, C:0.42, G:0.19, T:0.22
Consensus pattern (44 bp):
GCCCCCCTCCATCTAGATAGAGGCCCCCCCTCTCTCTATCGAGG
Left flanking sequence: Indices 51421 -- 51920
AAAGTTAACAACTTTTGTTTGTCCTAAGGACCGAAGGGACTTGGGACAAACAAACGACAACTCCT
TAGTATTGTATTGTCCGAAGTACCGTTGGTACGAAGGACAACCGTACCTCATCTTAACGGATCCC
CCCCCTAGCCCTATAGGGCTAGACCCCCCTGGGGGGGTAGAACAACAGACAAGACGGGGGGGTGT
ATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGACCTGTTGTATCAATAAATAT
AGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCTGGTTTCACT
CTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCTATCCGGAGG
CCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAGGCCCTCCCC
CTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGC
Right flanking sequence: Indices 52050 -- 52549
TATATCTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATATACAGAAA
TTGACAAGAATTGTACAGAAATTGACATGAATTGACAAGAATTGTACAGAAATTGACATAAATGG
TACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGGTACGATCTCCCATT
CTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGAGATGGGGCGGTATA
CTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTACAGAAATT
GACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGGATAGCAG
GGCTGTCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAGATAGGGCCTACTCC
ATTCCAACGGGTCTCGACCCTATCTATGAATCTTGGGCAACCATA
Found at i:52133 original size:21 final size:21
Alignment explanation
Indices: 52107--52148 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
52097 ACAGAATATA
52107 TACAGAAATTGACAAGAATTG
1 TACAGAAATTGACAAGAATTG
*
52128 TACAGAAATTGACATGAATTG
1 TACAGAAATTGACAAGAATTG
52149 ACAAGAATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (21 bp):
TACAGAAATTGACAAGAATTG
Left flanking sequence: Indices 51607 -- 52106
GGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGACCTGTTGTATC
AATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCT
GGTTTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCT
ATCCGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAG
GCCCTCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGCGCCCCCCTCCA
TCTAGATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATAGATAGAGGTTCCCTG
CCTCTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATCTATATCTGGAGG
CCCTCCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATA
Right flanking sequence: Indices 52149 -- 52648
ACAAGAATTGTACAGAAATTGACATAAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACA
GGACAATAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATATCTGTGCAAAT
CTAGATCTAGATATAGAGATGGGGCGGTATACTCTCTATCTATCTATCTAGACCCGGCCCGGTAC
TCTCTGGGTAGAGTTGAATTGTACAGAAATTGACATAAATAGGACCGGACCGCCTTTCCTTTAGA
TTCATTCGGTCGTTGCCCTGCAGGATAGCAGGGCTGTCTAGCTGCAACCCGATCCCCATGTAGTT
AGATAGGGCCGTTCTAGATAGGGCCTACTCCATTCCAACGGGTCTCGACCCTATCTATGAATCTT
GGGCAACCATATAGCTAATGGATCTAACTAGGGGGTTTCGAGTCCCTAATCCTATACACCACCTA
ATCCCAATCAGAACCCGGTCTGGGGTCCCTGGGCGGAAACCTAAA
Found at i:52134 original size:10 final size:10
Alignment explanation
Indices: 52092--52165 Score: 64
Period size: 10 Copynumber: 7.1 Consensus size: 10
52082 ACCCCTATAG
52092 ATTGTACAGA
1 ATTGTACAGA
*
52102 ATATATACAGAA
1 AT-TGTACAG-A
52114 ATTG-ACAAGA
1 ATTGTAC-AGA
52124 ATTGTACAGAA
1 ATTGTACAG-A
52135 ATTG-ACATGA
1 ATTGTACA-GA
52145 ATTG-ACAAGA
1 ATTGTAC-AGA
52155 ATTGTACAGA
1 ATTGTACAGA
52165 A
1 A
52166 ATTGACATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
10 31 0.57
11 20 0.37
12 3 0.06
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.26
Consensus pattern (10 bp):
ATTGTACAGA
Left flanking sequence: Indices 51592 -- 52091
ACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAA
AAGACCTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCG
CCTCAACCTCGATCTGGTTTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCC
CTCTCTCTATTCTCTATCCGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCT
ATTCTCTATCCGGAGGCCCTCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGG
GAGCGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATA
GATAGAGGTTCCCTGCCTCTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCT
ATCTATATCTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAG
Right flanking sequence: Indices 52166 -- 52665
ATTGACATAAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGG
TACGATCTCCCATTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGA
GATGGGGCGGTATACTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGA
ATTGTACAGAAATTGACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCC
CTGCAGGATAGCAGGGCTGTCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAG
ATAGGGCCTACTCCATTCCAACGGGTCTCGACCCTATCTATGAATCTTGGGCAACCATATAGCTA
ATGGATCTAACTAGGGGGTTTCGAGTCCCTAATCCTATACACCACCTAATCCCAATCAGAACCCG
GTCTGGGGTCCCTGGGCGGAAACCTAAACCCATCCCTATCTGGTC
Found at i:52151 original size:31 final size:32
Alignment explanation
Indices: 52092--52177 Score: 126
Period size: 31 Copynumber: 2.8 Consensus size: 32
52082 ACCCCTATAG
52092 ATTGTACAGAATATAT-ACA-GAAATTGACAAGA
1 ATTGTACAGAA-AT-TGACATGAAATTGACAAGA
52124 ATTGTACAGAAATTGACATG-AATTGACAAGA
1 ATTGTACAGAAATTGACATGAAATTGACAAGA
52155 ATTGTACAGAAATTGACAT-AAAT
1 ATTGTACAGAAATTGACATGAAAT
52178 GGTACGGTAC
Statistics
Matches: 51, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
30 1 0.02
31 38 0.75
32 12 0.24
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (32 bp):
ATTGTACAGAAATTGACATGAAATTGACAAGA
Left flanking sequence: Indices 51592 -- 52091
ACAACAGACAAGACGGGGGGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAA
AAGACCTGTTGTATCAATAAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCG
CCTCAACCTCGATCTGGTTTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCC
CTCTCTCTATTCTCTATCCGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCT
ATTCTCTATCCGGAGGCCCTCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGG
GAGCGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATA
GATAGAGGTTCCCTGCCTCTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCT
ATCTATATCTGGAGGCCCTCCCCCTCCCTATAGAGACCCCTATAG
Right flanking sequence: Indices 52178 -- 52677
GGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGGTACGATCTCCCA
TTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGAGATGGGGCGGTA
TACTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTACAGAAA
TTGACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGGATAGC
AGGGCTGTCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAGATAGGGCCTACT
CCATTCCAACGGGTCTCGACCCTATCTATGAATCTTGGGCAACCATATAGCTAATGGATCTAACT
AGGGGGTTTCGAGTCCCTAATCCTATACACCACCTAATCCCAATCAGAACCCGGTCTGGGGTCCC
TGGGCGGAAACCTAAACCCATCCCTATCTGGTCATAGACCGAGAA
Found at i:52155 original size:21 final size:20
Alignment explanation
Indices: 52110--52172 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
52100 GAATATATAC
52110 AGAAATTGACAAGAATTGTAC-
1 AGAAATTGAC-AGAATTG-ACA
52131 AGAAATTGACATGAATTGACA
1 AGAAATTGACA-GAATTGACA
52152 AG-AATTGTACAGAAATTGACA
1 AGAAATTG-ACAG-AATTGACA
52173 TAAATGGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
20 9 0.24
21 29 0.76
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.24
Consensus pattern (20 bp):
AGAAATTGACAGAATTGACA
Left flanking sequence: Indices 51610 -- 52109
GGGTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGACCTGTTGTATCAAT
AAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCTGGT
TTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCTATC
CGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAGGCC
CTCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGCGCCCCCCTCCATCT
AGATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATAGATAGAGGTTCCCTGCCT
CTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATCTATATCTGGAGGCCC
TCCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATATAC
Right flanking sequence: Indices 52173 -- 52672
TAAATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGGTACGATC
TCCCATTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGAGATGGGG
CGGTATACTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTAC
AGAAATTGACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGG
ATAGCAGGGCTGTCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAGATAGGGC
CTACTCCATTCCAACGGGTCTCGACCCTATCTATGAATCTTGGGCAACCATATAGCTAATGGATC
TAACTAGGGGGTTTCGAGTCCCTAATCCTATACACCACCTAATCCCAATCAGAACCCGGTCTGGG
GTCCCTGGGCGGAAACCTAAACCCATCCCTATCTGGTCATAGACC
Found at i:52177 original size:10 final size:9
Alignment explanation
Indices: 52112--52177 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 9
52102 ATATATACAG
52112 AAATTGACA
1 AAATTGACA
52121 AGAATTGTACA
1 A-AATTG-ACA
52132 GAAATTGACA
1 -AAATTGACA
*
52142 TGAATTGACA
1 -AAATTGACA
52152 AGAATTGTACA
1 A-AATTG-ACA
52163 GAAATTGACA
1 -AAATTGACA
52173 TAAAT
1 -AAAT
52178 GGTACGGTAC
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
9 1 0.02
10 28 0.60
11 16 0.34
12 2 0.04
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (9 bp):
AAATTGACA
Left flanking sequence: Indices 51612 -- 52111
GTGTATGAAATAGAGTTGGTAGGTTCAGTGCCTACTGTTAATGAAAAGACCTGTTGTATCAATAA
ATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCTGGTTT
CACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCTATCCG
GAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAGGCCCT
CCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGCGCCCCCCTCCATCTAG
ATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATAGATAGAGGTTCCCTGCCTCT
CTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATCTATATCTGGAGGCCCTC
CCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATATACAG
Right flanking sequence: Indices 52178 -- 52677
GGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAATAATGGTACGGTACGATCTCCCA
TTCTAGATAGAGGGACAGGACAATATCTGTGCAAATCTAGATCTAGATATAGAGATGGGGCGGTA
TACTCTCTATCTATCTATCTAGACCCGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTACAGAAA
TTGACATAAATAGGACCGGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGGATAGC
AGGGCTGTCTAGCTGCAACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAGATAGGGCCTACT
CCATTCCAACGGGTCTCGACCCTATCTATGAATCTTGGGCAACCATATAGCTAATGGATCTAACT
AGGGGGTTTCGAGTCCCTAATCCTATACACCACCTAATCCCAATCAGAACCCGGTCTGGGGTCCC
TGGGCGGAAACCTAAACCCATCCCTATCTGGTCATAGACCGAGAA
Found at i:52242 original size:46 final size:46
Alignment explanation
Indices: 52175--52267 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
52165 AATTGACATA
52175 AATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAAT
1 AATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAAT
52221 AATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAAT
1 AATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAAT
52267 A
1 A
52268 TCTGTGCAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (46 bp):
AATGGTACGGTACGATCTCCCATTCTAGATAGAGGGACAGGACAAT
Left flanking sequence: Indices 51675 -- 52174
AAATATAGTACGGTTCGCCTCTAGTATGTGGTTTTTATACCAGTTCGCCTCAACCTCGATCTGGT
TTCACTCTATTCGAATGGCCCCCCTCCATATCTATCGAGGGCCCCCCCTCTCTCTATTCTCTATC
CGGAGGCCCCCCTCCATATCTATCGAGGGCCCCCCTCTCTCTATTCTATTCTCTATCCGGAGGCC
CTCCCCCTCTATCTAGTTCTAGAGTCCCCCCTTCCTCTAGATATAGGGAGCGCCCCCCTCCATCT
AGATAGAGGGCCCCCCTCCATCTAGATAGAGGGCCCCCCTCCATATAGATAGAGGTTCCCTGCCT
CTCTATCGAGGGCCCCCTCCATCTAGTTCGAGGCCCCCCCTCTCTCTATCTATATCTGGAGGCCC
TCCCCCTCCCTATAGAGACCCCTATAGATTGTACAGAATATATACAGAAATTGACAAGAATTGTA
CAGAAATTGACATGAATTGACAAGAATTGTACAGAAATTGACATA
Right flanking sequence: Indices 52268 -- 52767
TCTGTGCAAATCTAGATCTAGATATAGAGATGGGGCGGTATACTCTCTATCTATCTATCTAGACC
CGGCCCGGTACTCTCTGGGTAGAGTTGAATTGTACAGAAATTGACATAAATAGGACCGGACCGCC
TTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGGATAGCAGGGCTGTCTAGCTGCAACCCGATC
CCCATGTAGTTAGATAGGGCCGTTCTAGATAGGGCCTACTCCATTCCAACGGGTCTCGACCCTAT
CTATGAATCTTGGGCAACCATATAGCTAATGGATCTAACTAGGGGGTTTCGAGTCCCTAATCCTA
TACACCACCTAATCCCAATCAGAACCCGGTCTGGGGTCCCTGGGCGGAAACCTAAACCCATCCCT
ATCTGGTCATAGACCGAGAACTATAGAATCTAGGGGAACTATAGGCATATCCATATCCATATCTA
GGGGAGCTCGACCGTTCAGATTAGATAGGGCCGGGGGAGCCGAGA
Found at i:52900 original size:5 final size:5
Alignment explanation
Indices: 52890--52964 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
52880 TCTCCCCTCG
52890 AGATA AGATA AGATA AGATA AGATA AGATA AGATA AGATA AGATA AGATA
1 AGATA AGATA AGATA AGATA AGATA AGATA AGATA AGATA AGATA AGATA
52940 AGATA AGATA AGATA AGATA AGATA
1 AGATA AGATA AGATA AGATA AGATA
52965 TATTAGAGCC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AGATA
Left flanking sequence: Indices 52390 -- 52889
GGACCGCCTTTCCTTTAGATTCATTCGGTCGTTGCCCTGCAGGATAGCAGGGCTGTCTAGCTGCA
ACCCGATCCCCATGTAGTTAGATAGGGCCGTTCTAGATAGGGCCTACTCCATTCCAACGGGTCTC
GACCCTATCTATGAATCTTGGGCAACCATATAGCTAATGGATCTAACTAGGGGGTTTCGAGTCCC
TAATCCTATACACCACCTAATCCCAATCAGAACCCGGTCTGGGGTCCCTGGGCGGAAACCTAAAC
CCATCCCTATCTGGTCATAGACCGAGAACTATAGAATCTAGGGGAACTATAGGCATATCCATATC
CATATCTAGGGGAGCTCGACCGTTCAGATTAGATAGGGCCGGGGGAGCCGAGATATATATAATAA
GGGAGGGGGGGGGGCCCGCCCCATATAGATAAGATATAGAGAATACCGAGATAATTCAATTCTAG
ATAGGGGGCCGTCGCCATATATCTATCTATATAGCTCTCCCCTCG
Right flanking sequence: Indices 52965 -- 53464
TATTAGAGCCGAGCCTCCTTCTGTCTATGTCTATAATTGGGTAACCCTGGAGCCCATCTATCTCT
ATAGGGGAGGGGGTGCCGACTATAGATATAGTTAGATAGATAGGGGTGGGCGAGTCCCTCTCCCC
CAGCTATATATCTATCCCCCGATGGCGGCTCTATATCTGGCCCCGGTCTCCCGAGCCCCCCCCCC
CTCTCTATATCTTCGGCTCTATATCTATTTTAAGGCATAACTAGAGATGTCGGCGCGAGGGATCT
AATCTATAGTAGCCCCCCCCTATATAGATATCTCGGCTATATATCTTATCTATATGGCGTCTATG
GAGTAGATAGAGTCAAGAACGAATAACGATCCCAGATAGAATATCTATATAGGCATGAAGACTTG
AATACATCTCCCAGATTCTCAAGTCTTCACAGATATATAGATCCCGAGATCTATAGAGAGGGCCC
CCTATATAGAGGCTGATATATAGGGAATCGTGAAGTTGTATTCAA
Found at i:54561 original size:33 final size:33
Alignment explanation
Indices: 54514--54579 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
54504 ACCGAACATC
*
54514 GCCATATCTCTATATCGGGGCGGGCCCTCTCTA
1 GCCATATCTATATATCGGGGCGGGCCCTCTCTA
54547 GCCATATCTATATATCGGGGCGGGCCCTCTCTA
1 GCCATATCTATATATCGGGGCGGGCCCTCTCTA
54580 CTCCCCCTCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.17, C:0.32, G:0.24, T:0.27
Consensus pattern (33 bp):
GCCATATCTATATATCGGGGCGGGCCCTCTCTA
Left flanking sequence: Indices 54014 -- 54513
GAGGGAGATCTATATGGGAGAGGCGAACGGCACTCCACTGCCATATAGATATATAGGGTGAGCGC
AGCGTAGCGTAGTGAGTGGCCCTATCTATATATCTCGAATTGAGTCAATGCCTATATAGAGATCA
ACCAATATATTCGAGGGCCCCCTATCTCCCATATATAGATCCGAGATCTATATAGAGGGGGGTCG
GCGAAACCATCCTTTCCTCAACCAACCTCTCTATAGGGGCACCTGATTATTGCCTTTCCCGACCA
TACAGATTCAAGAAATTATCTGTATGCCAGGATCAGTTATATATATAGGGCTATCTATCTTGGAA
GTCCATTGAACCCCAGGGCGTGAGACTCTAGATTCTATATGCCCGGCCCTCCACTAGAAAGATCT
ATGGCTCACCTCTATTATAGCTCAGATTAGATAGGCCCCGCCCCTATACTCTATATCGCTCGGGT
AATATTGTAGTTCCATATCTATATATAGGCAAGCGACCGAACATC
Right flanking sequence: Indices 54580 -- 55079
CTCCCCCTCTATATATATAGATGGGGGCCATTCATTCTATATGCCGGATCCCCTATGTTCTCGGG
AGCACGATGCGAACTATATAGATACATTTCATTATGATTTGTTCCTGCGTCAATCACTCTATATC
ACTATGGAGTGGAGATTGACTGCCCGGATGGGTAGGTGTCCCCTATCTATAGATCTGGGGAGGCC
CTATATAGATATCTGACCCCTATCTATATATGGGGTCACCTTCACTTCTGCATTATGTGACTATC
TTATCTATGATCTATAATCCACCATCTTATATCGGTTGGTTGGTCCACACTACCACAGACGGATA
GAGACCCACCGCATCAGTTCTATATAGGGTAAGGGTATAGGGCCCACCACAATTCCCCTATCTAT
ATATCCCGTGCCATCACCGCTTCCGCTTGATGCTCTTCTCCCCGGCCAACCAGCGGCAGATATCT
TAACTATCCTATCTCTCTCACCAGTTCGTTTCACCCATCTCGGGA
Found at i:55228 original size:14 final size:14
Alignment explanation
Indices: 55209--55240 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
55199 GGCCCAATAG
55209 ATATATATATCTAT
1 ATATATATATCTAT
55223 ATATATATATCTAT
1 ATATATATATCTAT
55237 ATAT
1 ATAT
55241 TCCCTATCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATATATATCTAT
Left flanking sequence: Indices 54709 -- 55208
CACTATGGAGTGGAGATTGACTGCCCGGATGGGTAGGTGTCCCCTATCTATAGATCTGGGGAGGC
CCTATATAGATATCTGACCCCTATCTATATATGGGGTCACCTTCACTTCTGCATTATGTGACTAT
CTTATCTATGATCTATAATCCACCATCTTATATCGGTTGGTTGGTCCACACTACCACAGACGGAT
AGAGACCCACCGCATCAGTTCTATATAGGGTAAGGGTATAGGGCCCACCACAATTCCCCTATCTA
TATATCCCGTGCCATCACCGCTTCCGCTTGATGCTCTTCTCCCCGGCCAACCAGCGGCAGATATC
TTAACTATCCTATCTCTCTCACCAGTTCGTTTCACCCATCTCGGGAGGGAGCCGCCTTGGGTAGG
AGATCTTTCCCATCCCCATCTATATAGAGGGGAGGGGAGTGGGCCTATCTATATATATATGGGGG
TTGTCCCTCTGTCGGAGATAGGGGATAGGGCATCGGGCCCAATAG
Right flanking sequence: Indices 55241 -- 55740
TCCCTATCTATATATGGGGGTTGTCCCGAGCTGACTCGAGTGAACCGGCCATATATAGATAGGTC
TATCCATATCCATATAGAGAGAGGGCGGAGCCGAGTACGAGTATATAGAGGAGAGGGCGGGGTTG
CTCCCGGGAGAAATAGAATCTATATTTGATGAGATTCTTTTAGGATATCTTTAACCGCTGGTCCG
TACTGGGATTGCCCTCTATCTATATATAGTAGGCGATCTCCCTCTATCTCTATATAGTAGGCGAT
GGTAGAGACGACCCTATAGTTCTGTTCTATCTGGGGCATCTGCATCTATAGTTAGTCGGCACTCC
CATATCTCTATATCTTCCCCCCCCTCCCTATATAGAACTATAGCTATCTGGAGGGCGACTATCTC
TATCTATAGTTCCCTATCCAGATATGGGGCACCCCCTATCCCTCCCGACGGCAGGGTCTATATAG
ATAGGTAGATCGATCTCAACTCGCCCCCTTATAGCTGGAGGGCGA
Found at i:55489 original size:28 final size:28
Alignment explanation
Indices: 55447--55500 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
55437 ACTGGGATTG
55447 CCCTCTATCTATATATAGTAGGCGATCT
1 CCCTCTATCTATATATAGTAGGCGATCT
*
55475 CCCTCTATCTCTATATAGTAGGCGAT
1 CCCTCTATCTATATATAGTAGGCGAT
55501 GGTAGAGACG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (28 bp):
CCCTCTATCTATATATAGTAGGCGATCT
Left flanking sequence: Indices 54947 -- 55446
CCCACCACAATTCCCCTATCTATATATCCCGTGCCATCACCGCTTCCGCTTGATGCTCTTCTCCC
CGGCCAACCAGCGGCAGATATCTTAACTATCCTATCTCTCTCACCAGTTCGTTTCACCCATCTCG
GGAGGGAGCCGCCTTGGGTAGGAGATCTTTCCCATCCCCATCTATATAGAGGGGAGGGGAGTGGG
CCTATCTATATATATATGGGGGTTGTCCCTCTGTCGGAGATAGGGGATAGGGCATCGGGCCCAAT
AGATATATATATCTATATATATATATCTATATATTCCCTATCTATATATGGGGGTTGTCCCGAGC
TGACTCGAGTGAACCGGCCATATATAGATAGGTCTATCCATATCCATATAGAGAGAGGGCGGAGC
CGAGTACGAGTATATAGAGGAGAGGGCGGGGTTGCTCCCGGGAGAAATAGAATCTATATTTGATG
AGATTCTTTTAGGATATCTTTAACCGCTGGTCCGTACTGGGATTG
Right flanking sequence: Indices 55501 -- 56000
GGTAGAGACGACCCTATAGTTCTGTTCTATCTGGGGCATCTGCATCTATAGTTAGTCGGCACTCC
CATATCTCTATATCTTCCCCCCCCTCCCTATATAGAACTATAGCTATCTGGAGGGCGACTATCTC
TATCTATAGTTCCCTATCCAGATATGGGGCACCCCCTATCCCTCCCGACGGCAGGGTCTATATAG
ATAGGTAGATCGATCTCAACTCGCCCCCTTATAGCTGGAGGGCGAGGCAGATATAGAGAGATGGG
GTCTATATAGATATATGCCATATCTATATACAGGGAGGACAATAGTCGGCTGGTTCTAATTCATC
CACATCCATTCCGCCCCACCCCATATCTGTACTGTATAGGCCGGCCGGATGAACTGACCAATAGG
CTCATACGGATCAGTGTTGTTTGGTCGCTTTCTATGCTAGTATATAGAGTTTTTTTGGGAGTTCT
ATAGTATAGGGCTCATCAGATATATAGAGGATTCTCAGATATATA
Found at i:57086 original size:25 final size:25
Alignment explanation
Indices: 57054--57108 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
57044 TCTGTAACGA
57054 AGAGGTACTATATCTCTATTCTGGC
1 AGAGGTACTATATCTCTATTCTGGC
57079 AGAGGTACTATATCTCTATTCTGGC
1 AGAGGTACTATATCTCTATTCTGGC
57104 AGAGG
1 AGAGG
57109 ATACGGATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (25 bp):
AGAGGTACTATATCTCTATTCTGGC
Left flanking sequence: Indices 56554 -- 57053
ATATATTAGTCAGTCAGTCTCCGTTCGACCGATACTATAGCGAGCCATATAGATATAGAGGGGGT
CAGTCTAGTGAGTACCCGGATGCAGAGGAGCTATAGATAGTCGAGCCCCCTGGATATATGGGTCT
ATATAGGCAGGTTGAATCCGAAAGATATATATACCTTAGTCGAGCCCTCGATCTCTAGTTCATTC
GGATGTTGCCATATCTATGCTATATAGCCGAGCCCCCTCTCTCATATAAGAGATAGGGGGGGAGC
CGAGATCTATATAATCTCTCTGAGAGGGGGGGGTGCCCCTATCTCTGCCTATATAGAGGGGGGGG
CCCCTATCTATAGACTACTTTACCGGGGGGGCATTATAGCATCCGGACCCCGGGGTGGGTGGGAG
GAGATAGGGGCGGTCAGATAAGATATGGGGGGGGGCGGATAGAGTGGGGTGGGGGGGGGCCCTAT
CTATATATGGGGGATCATCTATATCTCTCTCTATATCTGTAACGA
Right flanking sequence: Indices 57109 -- 57608
ATACGGATGAAGAATCAGAGGATAGGAATCAGAGGATACGGATGGCCTATATATCTAGATATATA
GATATCTATAGAGAGATATATAGATATCTATCTATATCTATATAGATATATAGATATAGATAGAT
ATATAGATATATAGATATATATCTTACGAGCACGAGATATAGATGACCGAACCCCATATATAGAG
AGAGGCGCCCTATAGACCTTATCTGCACCACTGTATATAGTTAGATATAGAGAGAGGGGGCCGGG
GCTGAACCAACCCCTATATATGGTTTGCGAGTACCACCATCCAATCACGAGGACTACTCTCGTTA
TATAGGGAATATATGGCCACTCGAGTCCCCTATCTATATATGGGAGACGAGTACTCTATCGACGA
GGACTCTATCGACTCTATCGACGAGGACTCTATCTCTATATAGGCAGGCCCTATATATCCATCTG
GCGAGTCCCCTATCGGAGCACAGATATATATAGATGACTAACCTA
Found at i:57139 original size:14 final size:14
Alignment explanation
Indices: 57120--57146 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57110 TACGGATGAA
57120 GAATCAGAGGATAG
1 GAATCAGAGGATAG
57134 GAATCAGAGGATA
1 GAATCAGAGGATA
57147 CGGATGGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.33, T:0.15
Consensus pattern (14 bp):
GAATCAGAGGATAG
Left flanking sequence: Indices 56620 -- 57119
AGTCTAGTGAGTACCCGGATGCAGAGGAGCTATAGATAGTCGAGCCCCCTGGATATATGGGTCTA
TATAGGCAGGTTGAATCCGAAAGATATATATACCTTAGTCGAGCCCTCGATCTCTAGTTCATTCG
GATGTTGCCATATCTATGCTATATAGCCGAGCCCCCTCTCTCATATAAGAGATAGGGGGGGAGCC
GAGATCTATATAATCTCTCTGAGAGGGGGGGGTGCCCCTATCTCTGCCTATATAGAGGGGGGGGC
CCCTATCTATAGACTACTTTACCGGGGGGGCATTATAGCATCCGGACCCCGGGGTGGGTGGGAGG
AGATAGGGGCGGTCAGATAAGATATGGGGGGGGGCGGATAGAGTGGGGTGGGGGGGGGCCCTATC
TATATATGGGGGATCATCTATATCTCTCTCTATATCTGTAACGAAGAGGTACTATATCTCTATTC
TGGCAGAGGTACTATATCTCTATTCTGGCAGAGGATACGGATGAA
Right flanking sequence: Indices 57147 -- 57646
CGGATGGCCTATATATCTAGATATATAGATATCTATAGAGAGATATATAGATATCTATCTATATC
TATATAGATATATAGATATAGATAGATATATAGATATATAGATATATATCTTACGAGCACGAGAT
ATAGATGACCGAACCCCATATATAGAGAGAGGCGCCCTATAGACCTTATCTGCACCACTGTATAT
AGTTAGATATAGAGAGAGGGGGCCGGGGCTGAACCAACCCCTATATATGGTTTGCGAGTACCACC
ATCCAATCACGAGGACTACTCTCGTTATATAGGGAATATATGGCCACTCGAGTCCCCTATCTATA
TATGGGAGACGAGTACTCTATCGACGAGGACTCTATCGACTCTATCGACGAGGACTCTATCTCTA
TATAGGCAGGCCCTATATATCCATCTGGCGAGTCCCCTATCGGAGCACAGATATATATAGATGAC
TAACCTATCTATATTAGAGGCGAGTGAACCAACCCCATATAGATA
Found at i:57175 original size:8 final size:8
Alignment explanation
Indices: 57159--57259 Score: 84
Period size: 8 Copynumber: 12.9 Consensus size: 8
57149 GATGGCCTAT
*
57159 ATATCTAG
1 ATATATAG
57167 ATATATAG
1 ATATATAG
*
57175 ATATCT--
1 ATATATAG
* *
57181 ATAGAGAG
1 ATATATAG
57189 ATATATAG
1 ATATATAG
*
57197 ATATCT--
1 ATATATAG
* *
57203 ATCTATAT
1 ATATATAG
*
57211 CTATATAG
1 ATATATAG
57219 ATATATAG
1 ATATATAG
57227 ATATAGATAG
1 ATAT--ATAG
57237 ATATATAG
1 ATATATAG
57245 ATATATAG
1 ATATATAG
57253 ATATATA
1 ATATATA
57260 TCTTACGAGC
Statistics
Matches: 73, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
6 7 0.10
8 58 0.79
10 8 0.11
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.38
Consensus pattern (8 bp):
ATATATAG
Left flanking sequence: Indices 56659 -- 57158
TCGAGCCCCCTGGATATATGGGTCTATATAGGCAGGTTGAATCCGAAAGATATATATACCTTAGT
CGAGCCCTCGATCTCTAGTTCATTCGGATGTTGCCATATCTATGCTATATAGCCGAGCCCCCTCT
CTCATATAAGAGATAGGGGGGGAGCCGAGATCTATATAATCTCTCTGAGAGGGGGGGGTGCCCCT
ATCTCTGCCTATATAGAGGGGGGGGCCCCTATCTATAGACTACTTTACCGGGGGGGCATTATAGC
ATCCGGACCCCGGGGTGGGTGGGAGGAGATAGGGGCGGTCAGATAAGATATGGGGGGGGGCGGAT
AGAGTGGGGTGGGGGGGGGCCCTATCTATATATGGGGGATCATCTATATCTCTCTCTATATCTGT
AACGAAGAGGTACTATATCTCTATTCTGGCAGAGGTACTATATCTCTATTCTGGCAGAGGATACG
GATGAAGAATCAGAGGATAGGAATCAGAGGATACGGATGGCCTAT
Right flanking sequence: Indices 57260 -- 57759
TCTTACGAGCACGAGATATAGATGACCGAACCCCATATATAGAGAGAGGCGCCCTATAGACCTTA
TCTGCACCACTGTATATAGTTAGATATAGAGAGAGGGGGCCGGGGCTGAACCAACCCCTATATAT
GGTTTGCGAGTACCACCATCCAATCACGAGGACTACTCTCGTTATATAGGGAATATATGGCCACT
CGAGTCCCCTATCTATATATGGGAGACGAGTACTCTATCGACGAGGACTCTATCGACTCTATCGA
CGAGGACTCTATCTCTATATAGGCAGGCCCTATATATCCATCTGGCGAGTCCCCTATCGGAGCAC
AGATATATATAGATGACTAACCTATCTATATTAGAGGCGAGTGAACCAACCCCATATAGATATAG
AGAGTATATAGAGGCGAGCACCACTGTATATAGTTTCACCATATATAGAGAGAGGCGCCCTATAG
ACCTTATCTGCACCACTGTATATAGTTAGATATAGAGCCGAAGAT
Found at i:57183 original size:10 final size:10
Alignment explanation
Indices: 57157--57260 Score: 63
Period size: 10 Copynumber: 10.8 Consensus size: 10
57147 CGGATGGCCT
*
57157 ATATATCTAG
1 ATATATATAG
* *
57167 ATATATAGAT
1 ATATATATAG
* *
57177 ATCTATAGAG
1 ATATATATAG
*
57187 AGATATATAG
1 ATATATATAG
* **
57197 ATATCTATCT
1 ATATATATAG
* *
57207 ATATCTATAT
1 ATATATATAG
*
57217 AGATATATAG
1 ATATATATAG
*
57227 ATATAGATAG
1 ATATATATAG
57237 --ATATATAG
1 ATATATATAG
57245 --ATATATAG
1 ATATATATAG
57253 ATATATAT
1 ATATATAT
57261 CTTACGAGCA
Statistics
Matches: 73, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
8 15 0.21
10 58 0.79
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (10 bp):
ATATATATAG
Left flanking sequence: Indices 56657 -- 57156
AGTCGAGCCCCCTGGATATATGGGTCTATATAGGCAGGTTGAATCCGAAAGATATATATACCTTA
GTCGAGCCCTCGATCTCTAGTTCATTCGGATGTTGCCATATCTATGCTATATAGCCGAGCCCCCT
CTCTCATATAAGAGATAGGGGGGGAGCCGAGATCTATATAATCTCTCTGAGAGGGGGGGGTGCCC
CTATCTCTGCCTATATAGAGGGGGGGGCCCCTATCTATAGACTACTTTACCGGGGGGGCATTATA
GCATCCGGACCCCGGGGTGGGTGGGAGGAGATAGGGGCGGTCAGATAAGATATGGGGGGGGGCGG
ATAGAGTGGGGTGGGGGGGGGCCCTATCTATATATGGGGGATCATCTATATCTCTCTCTATATCT
GTAACGAAGAGGTACTATATCTCTATTCTGGCAGAGGTACTATATCTCTATTCTGGCAGAGGATA
CGGATGAAGAATCAGAGGATAGGAATCAGAGGATACGGATGGCCT
Right flanking sequence: Indices 57261 -- 57760
CTTACGAGCACGAGATATAGATGACCGAACCCCATATATAGAGAGAGGCGCCCTATAGACCTTAT
CTGCACCACTGTATATAGTTAGATATAGAGAGAGGGGGCCGGGGCTGAACCAACCCCTATATATG
GTTTGCGAGTACCACCATCCAATCACGAGGACTACTCTCGTTATATAGGGAATATATGGCCACTC
GAGTCCCCTATCTATATATGGGAGACGAGTACTCTATCGACGAGGACTCTATCGACTCTATCGAC
GAGGACTCTATCTCTATATAGGCAGGCCCTATATATCCATCTGGCGAGTCCCCTATCGGAGCACA
GATATATATAGATGACTAACCTATCTATATTAGAGGCGAGTGAACCAACCCCATATAGATATAGA
GAGTATATAGAGGCGAGCACCACTGTATATAGTTTCACCATATATAGAGAGAGGCGCCCTATAGA
CCTTATCTGCACCACTGTATATAGTTAGATATAGAGCCGAAGATA
Found at i:57183 original size:22 final size:22
Alignment explanation
Indices: 57158--57259 Score: 91
Period size: 22 Copynumber: 4.7 Consensus size: 22
57148 GGATGGCCTA
*
57158 TATATCTAGATATATAGATATC
1 TATATATAGATATATAGATATC
* *
57180 TATAGAGAGATATATAGATATC
1 TATATATAGATATATAGATATC
* ** *
57202 TATCTATATCTATATAGATATA
1 TATATATAGATATATAGATATC
* * *
57224 TAGATATAGATAGAT--ATATA
1 TATATATAGATATATAGATATC
*
57244 GATATATAGATATATA
1 TATATATAGATATATA
57260 TCTTACGAGC
Statistics
Matches: 62, Mismatches: 17, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
20 17 0.27
22 45 0.73
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (22 bp):
TATATATAGATATATAGATATC
Left flanking sequence: Indices 56658 -- 57157
GTCGAGCCCCCTGGATATATGGGTCTATATAGGCAGGTTGAATCCGAAAGATATATATACCTTAG
TCGAGCCCTCGATCTCTAGTTCATTCGGATGTTGCCATATCTATGCTATATAGCCGAGCCCCCTC
TCTCATATAAGAGATAGGGGGGGAGCCGAGATCTATATAATCTCTCTGAGAGGGGGGGGTGCCCC
TATCTCTGCCTATATAGAGGGGGGGGCCCCTATCTATAGACTACTTTACCGGGGGGGCATTATAG
CATCCGGACCCCGGGGTGGGTGGGAGGAGATAGGGGCGGTCAGATAAGATATGGGGGGGGGCGGA
TAGAGTGGGGTGGGGGGGGGCCCTATCTATATATGGGGGATCATCTATATCTCTCTCTATATCTG
TAACGAAGAGGTACTATATCTCTATTCTGGCAGAGGTACTATATCTCTATTCTGGCAGAGGATAC
GGATGAAGAATCAGAGGATAGGAATCAGAGGATACGGATGGCCTA
Right flanking sequence: Indices 57260 -- 57759
TCTTACGAGCACGAGATATAGATGACCGAACCCCATATATAGAGAGAGGCGCCCTATAGACCTTA
TCTGCACCACTGTATATAGTTAGATATAGAGAGAGGGGGCCGGGGCTGAACCAACCCCTATATAT
GGTTTGCGAGTACCACCATCCAATCACGAGGACTACTCTCGTTATATAGGGAATATATGGCCACT
CGAGTCCCCTATCTATATATGGGAGACGAGTACTCTATCGACGAGGACTCTATCGACTCTATCGA
CGAGGACTCTATCTCTATATAGGCAGGCCCTATATATCCATCTGGCGAGTCCCCTATCGGAGCAC
AGATATATATAGATGACTAACCTATCTATATTAGAGGCGAGTGAACCAACCCCATATAGATATAG
AGAGTATATAGAGGCGAGCACCACTGTATATAGTTTCACCATATATAGAGAGAGGCGCCCTATAG
ACCTTATCTGCACCACTGTATATAGTTAGATATAGAGCCGAAGAT
Found at i:57514 original size:24 final size:24
Alignment explanation
Indices: 57486--57532 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
57476 GGAGACGAGT
57486 ACTCTATCGACGAGGACTCTATCG
1 ACTCTATCGACGAGGACTCTATCG
57510 ACTCTATCGACGAGGACTCTATC
1 ACTCTATCGACGAGGACTCTATC
57533 TCTATATAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (24 bp):
ACTCTATCGACGAGGACTCTATCG
Left flanking sequence: Indices 56986 -- 57485
AGTGGGGTGGGGGGGGGCCCTATCTATATATGGGGGATCATCTATATCTCTCTCTATATCTGTAA
CGAAGAGGTACTATATCTCTATTCTGGCAGAGGTACTATATCTCTATTCTGGCAGAGGATACGGA
TGAAGAATCAGAGGATAGGAATCAGAGGATACGGATGGCCTATATATCTAGATATATAGATATCT
ATAGAGAGATATATAGATATCTATCTATATCTATATAGATATATAGATATAGATAGATATATAGA
TATATAGATATATATCTTACGAGCACGAGATATAGATGACCGAACCCCATATATAGAGAGAGGCG
CCCTATAGACCTTATCTGCACCACTGTATATAGTTAGATATAGAGAGAGGGGGCCGGGGCTGAAC
CAACCCCTATATATGGTTTGCGAGTACCACCATCCAATCACGAGGACTACTCTCGTTATATAGGG
AATATATGGCCACTCGAGTCCCCTATCTATATATGGGAGACGAGT
Right flanking sequence: Indices 57533 -- 58032
TCTATATAGGCAGGCCCTATATATCCATCTGGCGAGTCCCCTATCGGAGCACAGATATATATAGA
TGACTAACCTATCTATATTAGAGGCGAGTGAACCAACCCCATATAGATATAGAGAGTATATAGAG
GCGAGCACCACTGTATATAGTTTCACCATATATAGAGAGAGGCGCCCTATAGACCTTATCTGCAC
CACTGTATATAGTTAGATATAGAGCCGAAGATATGATATATAGAGAGGGGGCCAACCATTCTCTA
TATATGGGCGAGGACCACATATAGAGATAAAGATATATAGAGAGGGGGGTTTGTTTCTTTGGCGA
CCACGAGACCATTCCCGACCACTGTATATAGTTTCATTGGCCAACGATAGAACCCCCTGTCTATA
TATGAGGACCAATGTCTATAGTTTCATTGGCCGAGGGTATGAATCGAGGTTCATACTATATACGT
AACATGACATGACCCTATATCTAGATCTATATCTATCTGGGGCGG
Found at i:57532 original size:15 final size:15
Alignment explanation
Indices: 57479--57511 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
57469 ATATATGGGA
*
57479 GACGAGTACTCTATC
1 GACGAGGACTCTATC
57494 GACGAGGACTCTATC
1 GACGAGGACTCTATC
57509 GAC
1 GAC
57512 TCTATCGACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.21
Consensus pattern (15 bp):
GACGAGGACTCTATC
Left flanking sequence: Indices 56979 -- 57478
CGGATAGAGTGGGGTGGGGGGGGGCCCTATCTATATATGGGGGATCATCTATATCTCTCTCTATA
TCTGTAACGAAGAGGTACTATATCTCTATTCTGGCAGAGGTACTATATCTCTATTCTGGCAGAGG
ATACGGATGAAGAATCAGAGGATAGGAATCAGAGGATACGGATGGCCTATATATCTAGATATATA
GATATCTATAGAGAGATATATAGATATCTATCTATATCTATATAGATATATAGATATAGATAGAT
ATATAGATATATAGATATATATCTTACGAGCACGAGATATAGATGACCGAACCCCATATATAGAG
AGAGGCGCCCTATAGACCTTATCTGCACCACTGTATATAGTTAGATATAGAGAGAGGGGGCCGGG
GCTGAACCAACCCCTATATATGGTTTGCGAGTACCACCATCCAATCACGAGGACTACTCTCGTTA
TATAGGGAATATATGGCCACTCGAGTCCCCTATCTATATATGGGA
Right flanking sequence: Indices 57512 -- 58011
TCTATCGACGAGGACTCTATCTCTATATAGGCAGGCCCTATATATCCATCTGGCGAGTCCCCTAT
CGGAGCACAGATATATATAGATGACTAACCTATCTATATTAGAGGCGAGTGAACCAACCCCATAT
AGATATAGAGAGTATATAGAGGCGAGCACCACTGTATATAGTTTCACCATATATAGAGAGAGGCG
CCCTATAGACCTTATCTGCACCACTGTATATAGTTAGATATAGAGCCGAAGATATGATATATAGA
GAGGGGGCCAACCATTCTCTATATATGGGCGAGGACCACATATAGAGATAAAGATATATAGAGAG
GGGGGTTTGTTTCTTTGGCGACCACGAGACCATTCCCGACCACTGTATATAGTTTCATTGGCCAA
CGATAGAACCCCCTGTCTATATATGAGGACCAATGTCTATAGTTTCATTGGCCGAGGGTATGAAT
CGAGGTTCATACTATATACGTAACATGACATGACCCTATATCTAG
Found at i:58486 original size:30 final size:28
Alignment explanation
Indices: 58440--58589 Score: 146
Period size: 28 Copynumber: 5.2 Consensus size: 28
58430 GGGTTCTCGG
58440 TGAGATTCAATATATAGATCGGGTGAGA
1 TGAGATTCAATATATAGATCGGGTGAGA
58468 TGAGATTCAATCTATATAGATCGGGTGAGA
1 TGAGATTCAA--TATATAGATCGGGTGAGA
* *
58498 TGAGA-TGAGATATCTAGATCGGGTGAGA
1 TGAGATTCA-ATATATAGATCGGGTGAGA
*** *
58526 TGAGATTCAATCTATATAGAT-ATAT-ATCTA
1 TGAGATTCAA--TATATAGATCGGGTGA--GA
58556 TCG-GATTCAATATATAGATCGGGTGAGA
1 T-GAGATTCAATATATAGATCGGGTGAGA
58584 TGAGAT
1 TGAGAT
58590 GGGAGAGATA
Statistics
Matches: 98, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
27 1 0.01
28 48 0.49
29 6 0.06
30 42 0.43
31 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.31
Consensus pattern (28 bp):
TGAGATTCAATATATAGATCGGGTGAGA
Left flanking sequence: Indices 57940 -- 58439
ATAGTTTCATTGGCCGAGGGTATGAATCGAGGTTCATACTATATACGTAACATGACATGACCCTA
TATCTAGATCTATATCTATCTGGGGCGGATAGATCTATAGATATATAGGGAGGGGGCCTAGCCAG
ATAGATCCATCTCCATCGGGGGGCCTAGCCAGATAGATATCGGGTGAGATTCAATCTATAGATCG
GGTGAGATGAGATAGATCGGGTGCCTATATAGTGATCTGGCGATGGGAGAGATAGAGAGGGGGCT
GAGATGGGCTGAGAGAATTCTATATGAAACCAATATATCTATCGGGTGAGAAGAGATGGGAGAGA
TAGAGAGGGGGCTGAGATTCAATATCTCGGGTGCCTATATATTGATCTGGGGGCTATTCTGAGAT
TAGATTCAATCTCTCGGTTTCATCTATAGATCGGGTGAGATGAGATTCAATATATCTATCGGGTG
AGATGAGATGGGAGAGATAGAGAGGGGGCTGAGATGGGTTCTCGG
Right flanking sequence: Indices 58590 -- 59089
GGGAGAGATAGAGAGGGGGGAGATAGGGGGCCCCACTCTCTATATATCTCCCAAGCATGACATAC
AATTCTTTATGTAGCCGTCGGCGCAAGGGCCTGGCCTATCTATAGTAGCCCTCGGCCCAGCGGTG
CGGGGGGCACCTATAGAGTATAGAGCTAGCTGCCCCCAATTCTCTATAGATCCTCCCTATACCTA
ATCTATAGAGGAACTATTCCCTATCCATATAGGGTAGGGGCGGGGTGGGTGGGGATTGGATAGAT
TGTATATAGACCCCATAGATAGAAGTCCTCGGCATATCTAACTCGGATAGGGGTCGGGGCGTGCC
TATTGATTTGATTTCTATGCGCTCGACCGCCCAATCATTGACCATATCTATATAGAGTGGGGCCA
TCTATACTCAGTCTATATAGGGGGAGGGGGGGGGCCCTATATATCTAATCTATCTGGGCAGTCGA
GTCAGTTACATATATAGGGCCCCCCCCTATATAGAGGCTGATATA
Found at i:58574 original size:58 final size:58
Alignment explanation
Indices: 58440--58589 Score: 182
Period size: 58 Copynumber: 2.6 Consensus size: 58
58430 GGGTTCTCGG
* *
58440 TGAGATTCAATATATAGATCGGGTGAGATGAGATTCAATCTATATAGATCGGGTGAGA
1 TGAGATTCAATATATAGATCGGGTGAGATGAGATTCAATCTATATAGATCAGATGAGA
* * * *
58498 TGAGA-TGAGATATCTAGATCGGGTGAGATGAGATTCAATCTATATAGAT-ATAT-ATCTA
1 TGAGATTCA-ATATATAGATCGGGTGAGATGAGATTCAATCTATATAGATCAGATGA--GA
58556 TCG-GATTCAATATATAGATCGGGTGAGATGAGAT
1 T-GAGATTCAATATATAGATCGGGTGAGATGAGAT
58590 GGGAGAGATA
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
56 1 0.01
57 3 0.04
58 72 0.91
59 3 0.04
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.31
Consensus pattern (58 bp):
TGAGATTCAATATATAGATCGGGTGAGATGAGATTCAATCTATATAGATCAGATGAGA
Left flanking sequence: Indices 57940 -- 58439
ATAGTTTCATTGGCCGAGGGTATGAATCGAGGTTCATACTATATACGTAACATGACATGACCCTA
TATCTAGATCTATATCTATCTGGGGCGGATAGATCTATAGATATATAGGGAGGGGGCCTAGCCAG
ATAGATCCATCTCCATCGGGGGGCCTAGCCAGATAGATATCGGGTGAGATTCAATCTATAGATCG
GGTGAGATGAGATAGATCGGGTGCCTATATAGTGATCTGGCGATGGGAGAGATAGAGAGGGGGCT
GAGATGGGCTGAGAGAATTCTATATGAAACCAATATATCTATCGGGTGAGAAGAGATGGGAGAGA
TAGAGAGGGGGCTGAGATTCAATATCTCGGGTGCCTATATATTGATCTGGGGGCTATTCTGAGAT
TAGATTCAATCTCTCGGTTTCATCTATAGATCGGGTGAGATGAGATTCAATATATCTATCGGGTG
AGATGAGATGGGAGAGATAGAGAGGGGGCTGAGATGGGTTCTCGG
Right flanking sequence: Indices 58590 -- 59089
GGGAGAGATAGAGAGGGGGGAGATAGGGGGCCCCACTCTCTATATATCTCCCAAGCATGACATAC
AATTCTTTATGTAGCCGTCGGCGCAAGGGCCTGGCCTATCTATAGTAGCCCTCGGCCCAGCGGTG
CGGGGGGCACCTATAGAGTATAGAGCTAGCTGCCCCCAATTCTCTATAGATCCTCCCTATACCTA
ATCTATAGAGGAACTATTCCCTATCCATATAGGGTAGGGGCGGGGTGGGTGGGGATTGGATAGAT
TGTATATAGACCCCATAGATAGAAGTCCTCGGCATATCTAACTCGGATAGGGGTCGGGGCGTGCC
TATTGATTTGATTTCTATGCGCTCGACCGCCCAATCATTGACCATATCTATATAGAGTGGGGCCA
TCTATACTCAGTCTATATAGGGGGAGGGGGGGGGCCCTATATATCTAATCTATCTGGGCAGTCGA
GTCAGTTACATATATAGGGCCCCCCCCTATATAGAGGCTGATATA
Found at i:59750 original size:5 final size:5
Alignment explanation
Indices: 59742--59801 Score: 120
Period size: 5 Copynumber: 12.0 Consensus size: 5
59732 TATTAATATA
59742 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG
1 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG
59792 TAGGG TAGGG
1 TAGGG TAGGG
59802 CCCGATACCG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.20, C:0.00, G:0.60, T:0.20
Consensus pattern (5 bp):
TAGGG
Left flanking sequence: Indices 59242 -- 59741
CTGGGGGAGACTCACTCTATAGTCGGCACCCTATATATAGATATGGCGCCCCTATATATCTCAAC
TGGAGGGCCCGGGGTATATAGACAGGACAGATAGGGCCCATATAGATATAGAAATAAAGAGAGGG
ATAGAGGGGGCACCATATTGAGTGCATCGATCCGATCAACCCATTCAAGCTTCCATTCCCCTCGC
CCCCATATATGGATAGGAATATATAGATAGATAGGGCGTCGGGACGAGATAATAGTAGATCTCGC
GGCCCAGCCCATATATAGATAGGAATAGATAGATAGATAGGGCGGTTAAGAAGACGATCTTTTGA
ACCTCACTCACCTCGATTCAGATATAGGCCTCATCAAGCGCTTCGCGCCCAATCAGTCGAGATCA
TCTCTCTCGAACGGAAATCATCCCTATTGTTTATAGATAGCCATCCAGCGTATTATTACTCTGTG
TGAATCACTACCCGAAGTATATAAGGGCGCCGCGCTATTAATATA
Right flanking sequence: Indices 59802 -- 60301
CCCGATACCGGATGGTTCGGTGAATCCAGATGCTTCCTAGATATAGAGTCTATAGGGCAGTTCGG
TGAGCCGGTGAATAGCCACGATAGAGAGTCTATAGGCCAGCCACTTAATAATGGTTCGGTGGATC
TGGGCCCCTATCTATATATGGCGCTCGAGCCTTCGGTGAATCGAATCAAGATGCTTCGTCACTCG
GGAGAGCACCCGGCCGGATAGATAGATAGTGGGGCGGGGCACCCTATAGATCTCTATGGCGAATA
GATAGATCGGCCCGATTCCAAGACCCCGCGCACCTCTCCGGTCAGACACCCCCATATATAGATAG
GGCAGATATATGTAATACGCTCCCCTCACCTTCCTCTCGGTGTTTCTATACCATACCGATTCTCC
CTCTTTTCTTCCGGCAACAAGCTCCTATCGACTCGAGCGACCGACCCACCCACTATAAGGTGAGG
GGTGAGGAGGGAGATCTTCGACACATTCATTATGAGTCTTACTCA
Found at i:60883 original size:18 final size:18
Alignment explanation
Indices: 60862--60902 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
60852 AGGGGCGGCC
60862 ATATAGATATAGAGAGAG
1 ATATAGATATAGAGAGAG
60880 ATATAGATATAGAGAGAG
1 ATATAGATATAGAGAGAG
60898 ATATA
1 ATATA
60903 TCTCCTCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (18 bp):
ATATAGATATAGAGAGAG
Left flanking sequence: Indices 60362 -- 60861
ATCACGCTTTCGCTCGCCGAGTGATCGGGGAGGCCGACCCCTATATAGAGAACTGATGCGTACCG
AAGCTCCCCGGAGGGAAGCCTTTCTATGCGCTTCCGGAAGGTCGGTATCTGGCATGAGTAACGGG
AATCATGGAGATGCCCCCGAACTGCGGAAATCGATGAGGATGCTGACGATGGTAGAGACGACCCT
ATAGTTCTATCTGATCGAGGGAGACTAGAGTCATGCTTTCGATCGACCGACCCGATAGATCTCGA
GAGATATAGATAGATCTCGAGTGCCCAAATAGAGATAGGGGGTCGAGTGCCAACCTACAACCTAC
AAGTGCTTGAGAGAGAGTACCACTCTATCACGTATATAGTAGGTCGAGTGCTATCCTCATGGCTC
ACTCGATTCTATTATATACGTGATACGAAGCCCTATATCTACTCTCTCCATACAGACTGAATACA
GGTTGGCACTCGCCTATACATATTAGGAGATAGATAGGGGCGGCC
Right flanking sequence: Indices 60903 -- 61402
TCTCCTCCCTTCCCGACTCCCCGCCAGTGAACATGACTGCCTTCTCGGGCCGACCCCCTCTATAG
ATATGGATGGGGCCATCTATATAGATCAGATCCACGAGGCCATCTAGATAGTGACTCTGATATTC
TGAGATGGCCATAGTTCAGATAGGGGCCCCCTATAGAGATCTTATAGAGAAGGCAGCCCTATATA
GATATAGATTCTTCCCAGATCTCTCTATAGGGGGGCCATATCTCTATATAGGGTATGAGCTGATG
GCGAGGAGAGGCATATAACTATGGCGAGGAGAGGCAAGTGGTCTGTGGTATAGTCTATAGATAGG
CAGGCCCCCCTCACATAACTATAGAGAGGGCGGGTGAGATCCCCCCTCTCTCTATATCTCTCTAT
ATCTCTCTATATCTTCTCTATATGGGCTACTCATCTCACGAGCACACCCTCCCCTGCCCCGGGGG
TGGTTGAATACGTGATATGATACCCCCCGGCCGACTACCGACTAC
Found at i:61289 original size:10 final size:10
Alignment explanation
Indices: 61274--61315 Score: 75
Period size: 10 Copynumber: 4.1 Consensus size: 10
61264 AGATCCCCCC
61274 TCTCTCTATA
1 TCTCTCTATA
61284 TCTCTCTATA
1 TCTCTCTATA
61294 TCTCTCTATA
1 TCTCTCTATA
61304 TCTTCTCTATA
1 TC-TCTCTATA
61315 T
1 T
61316 GGGCTACTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 22 0.71
11 9 0.29
ACGTcount: A:0.19, C:0.29, G:0.00, T:0.52
Consensus pattern (10 bp):
TCTCTCTATA
Left flanking sequence: Indices 60774 -- 61273
ATACGAAGCCCTATATCTACTCTCTCCATACAGACTGAATACAGGTTGGCACTCGCCTATACATA
TTAGGAGATAGATAGGGGCGGCCATATAGATATAGAGAGAGATATAGATATAGAGAGAGATATAT
CTCCTCCCTTCCCGACTCCCCGCCAGTGAACATGACTGCCTTCTCGGGCCGACCCCCTCTATAGA
TATGGATGGGGCCATCTATATAGATCAGATCCACGAGGCCATCTAGATAGTGACTCTGATATTCT
GAGATGGCCATAGTTCAGATAGGGGCCCCCTATAGAGATCTTATAGAGAAGGCAGCCCTATATAG
ATATAGATTCTTCCCAGATCTCTCTATAGGGGGGCCATATCTCTATATAGGGTATGAGCTGATGG
CGAGGAGAGGCATATAACTATGGCGAGGAGAGGCAAGTGGTCTGTGGTATAGTCTATAGATAGGC
AGGCCCCCCTCACATAACTATAGAGAGGGCGGGTGAGATCCCCCC
Right flanking sequence: Indices 61316 -- 61815
GGGCTACTCATCTCACGAGCACACCCTCCCCTGCCCCGGGGGTGGTTGAATACGTGATATGATAC
CCCCCGGCCGACTACCGACTACCGACTATATCTATCTAGTTGGGGTGATATGATCGACTATCGAC
TCTATATAGATAGTTAGTTGGGGTGAACGGTACCATATAGATATGGCACTGACTAGATTGCCTAT
CTATAGTTCTGGGGAGTGCCCCCTATATAGATATCTGGGAGTGAATCAAGTCAAGCTAGCGCCCG
GACGCCCCTAGAGATCTGGGGCCCCAGATCTATATCTAGGGGCCCGGTCGCCATATCTATCTATA
TAGGGTGCCCCATACATATAGAATAGAGATTGTAATGCGGATGCCCGGGCCCCCACCCCCCCTCT
CTGAACTATCTATAGTATAGAGTATATTATATAGTTTCATTGGCACTCGATAACCTCTATCTCTG
TATGAGTGGGAGTGGCGGCATTATGATGTAATGGTTCAGAACCGA
Found at i:63995 original size:5 final size:5
Alignment explanation
Indices: 63985--64028 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
63975 CTACACCATA
* * *
63985 TATTC TATTC TATTC TATTC TATTC TATTA TATTA TATTA TATT
1 TATTC TATTC TATTC TATTC TATTC TATTC TATTC TATTC TATT
64029 ATTGGCCGGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTC
Left flanking sequence: Indices 63485 -- 63984
ATATGCCACGGTATTTCCCCATCGACCCTCTCATATCACGTATATGATCTATCCTCCATCATCTA
GATTCTCATCCGTCAGGCCGGGTTCTCTCTTTAGTCCAGGGCATAGATAGATCTCTATATAGCTG
GCAATCTATACCTAGCCCCTCACCCCCTCATTCAGCCCTATATATCCCCCCAGATCTGGGAGCCG
AGAAATCTAGATAGGGGGGGCTATCTATCTATCTGTCTTTCATCATATCACGTATAGGATCTATC
CTCCAGCCTCTTCTCTCTCAGCCGAACTATGGATATAGGCCCCCCCCTCCTCTCATTCAGAATTC
TAGATATAGGCGTTCACTCTTTAGCCGAGGGCACCCCCCATAGTCTCATTCAGGCCCCCCTCTCT
CCCCCCCCCTCTCTCTCTATGGGGGAGCCGAGATAAGATAGAATAGAGAGGGGGGGGGCCCTATC
TATATCTGGCAAGCGCCCCACCCGCCTTCTCCCACCTACACCATA
Right flanking sequence: Indices 64029 -- 64528
ATTGGCCGGTTCCAAACCAAATAGTATACATCGTCTACTAGAAACTCTAGTAAGGCGAGTGTGGG
AAAGGGGAGGCCATATATCTCTGCCCGGATCCGGCCAGGTGGGCGTATCCCCATATAGATAGAGG
GGGGGCCATCTCTCTATAGAGAGCCCTATCTATATCTGGGGGCGGCTATGGCCCGAGAGATGGCC
CCCCCCACCCCCCCTCTATAGATTCCCAGATAGAGAGAGGGGGGGGGGCGCCCTCTCTCTATCTG
GGGGTAGTCGGCAGCTACTTCAGATATAGATAGGCATATATATATACAGATAGGGCGGCCTAGCT
GGCCCCAGCTATATAAGACTTTGGGGGGGGCAACTCTCTATAGTCGGCACCCCCCCTTATATCTA
TATGGGCGCCCTATCCCCCCTAGATTCTCTGGGCCCCCCAGATCTATCTATAGGGCCCCTATATT
CTATTATATTCTCTGGAGGGGGGGGGGGGCGATAGCCATATAGAT
Found at i:64005 original size:15 final size:15
Alignment explanation
Indices: 63983--64030 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
63973 ACCTACACCA
63983 TATATTCTATTCTAT
1 TATATTCTATTCTAT
*
63998 TCTATTCTATTCTAT
1 TATATTCTATTCTAT
* *
64013 TATATTATATTATAT
1 TATATTCTATTCTAT
64028 TAT
1 TAT
64031 TGGCCGGTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.60
Consensus pattern (15 bp):
TATATTCTATTCTAT
Left flanking sequence: Indices 63483 -- 63982
CTATATGCCACGGTATTTCCCCATCGACCCTCTCATATCACGTATATGATCTATCCTCCATCATC
TAGATTCTCATCCGTCAGGCCGGGTTCTCTCTTTAGTCCAGGGCATAGATAGATCTCTATATAGC
TGGCAATCTATACCTAGCCCCTCACCCCCTCATTCAGCCCTATATATCCCCCCAGATCTGGGAGC
CGAGAAATCTAGATAGGGGGGGCTATCTATCTATCTGTCTTTCATCATATCACGTATAGGATCTA
TCCTCCAGCCTCTTCTCTCTCAGCCGAACTATGGATATAGGCCCCCCCCTCCTCTCATTCAGAAT
TCTAGATATAGGCGTTCACTCTTTAGCCGAGGGCACCCCCCATAGTCTCATTCAGGCCCCCCTCT
CTCCCCCCCCCTCTCTCTCTATGGGGGAGCCGAGATAAGATAGAATAGAGAGGGGGGGGGCCCTA
TCTATATCTGGCAAGCGCCCCACCCGCCTTCTCCCACCTACACCA
Right flanking sequence: Indices 64031 -- 64530
TGGCCGGTTCCAAACCAAATAGTATACATCGTCTACTAGAAACTCTAGTAAGGCGAGTGTGGGAA
AGGGGAGGCCATATATCTCTGCCCGGATCCGGCCAGGTGGGCGTATCCCCATATAGATAGAGGGG
GGGCCATCTCTCTATAGAGAGCCCTATCTATATCTGGGGGCGGCTATGGCCCGAGAGATGGCCCC
CCCCACCCCCCCTCTATAGATTCCCAGATAGAGAGAGGGGGGGGGGCGCCCTCTCTCTATCTGGG
GGTAGTCGGCAGCTACTTCAGATATAGATAGGCATATATATATACAGATAGGGCGGCCTAGCTGG
CCCCAGCTATATAAGACTTTGGGGGGGGCAACTCTCTATAGTCGGCACCCCCCCTTATATCTATA
TGGGCGCCCTATCCCCCCTAGATTCTCTGGGCCCCCCAGATCTATCTATAGGGCCCCTATATTCT
ATTATATTCTCTGGAGGGGGGGGGGGGCGATAGCCATATAGATCT
Found at i:64704 original size:21 final size:21
Alignment explanation
Indices: 64680--64719 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64670 ACTCTTCACT
*
64680 CTATCTCTCTCTATATCTCGA
1 CTATCTCTATCTATATCTCGA
*
64701 CTATCTCTATCTGTATCTC
1 CTATCTCTATCTATATCTC
64720 TCTCAGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.33, G:0.05, T:0.45
Consensus pattern (21 bp):
CTATCTCTATCTATATCTCGA
Left flanking sequence: Indices 64180 -- 64679
AGCCCTATCTATATCTGGGGGCGGCTATGGCCCGAGAGATGGCCCCCCCCACCCCCCCTCTATAG
ATTCCCAGATAGAGAGAGGGGGGGGGGCGCCCTCTCTCTATCTGGGGGTAGTCGGCAGCTACTTC
AGATATAGATAGGCATATATATATACAGATAGGGCGGCCTAGCTGGCCCCAGCTATATAAGACTT
TGGGGGGGGCAACTCTCTATAGTCGGCACCCCCCCTTATATCTATATGGGCGCCCTATCCCCCCT
AGATTCTCTGGGCCCCCCAGATCTATCTATAGGGCCCCTATATTCTATTATATTCTCTGGAGGGG
GGGGGGGGCGATAGCCATATAGATCTCTAGGGGGAGGAGCCCTATCTCTATATGGGGGCGGCTAT
ATAGAGTCGGCACCCGCCCCTCCCCTAGATCTCTATCTGGCTATCTGGAGATCGAGGGACCCTAT
AGAGAGATATATATCTAGAGATATATCTATATCTCACTCTTCACT
Right flanking sequence: Indices 64720 -- 65219
TCTCAGATATATATCTCTCTCTATATCTCTATCTGCACTCTCTCTCAGATATATATCTCGAATAT
CTCTATCTGCACTCTCTCAGATATATATCTCGACTATCTCTATCTCTCTCTATAGATCTAGATCT
CTATCTCTCTCTAGAGATCTAGATCTCTCTATAGGCCGCCCCTATAGATCCCCTTGCGTTGTCCC
GTTCCACTCCGATTCGAAACCCGGGAGTAATAAGAATGAGATGGAGAAGTCAATCATGTTGGTCG
GTGAGCCTAGTGATAGGGGACTATCAAGCTCGGTTCGGAGAGCACTTGTTCACTCGGCTTGCTCA
ATGTTACAGCCTAAATGCCGAACCATCGACCCTACTTGCCCGGATGGGTGTTCACCCCAAAGTGT
TCCCGGACCGTATGCACACCCCCGTAGGTAACTTAGTGCAACATGGCAGATTTCATCGAAAGAGA
TCAGCGGATGAAATAGGAAGTGAATCTCAGTAGGAGGGAACGAAG
Found at i:64809 original size:37 final size:38
Alignment explanation
Indices: 64691--64829 Score: 190
Period size: 37 Copynumber: 3.6 Consensus size: 38
64681 TATCTCTCTC
* *
64691 TATATCTCGACTATCTCTATCTGTATCTCTCTCAGATA
1 TATATCTCGAATATCTCTATCTGCATCTCTCTCAGATA
**
64729 TATATCTCTCTCTATATCTCTATCTGCACTCTCTCTCAGATA
1 TATA--TCTC-GAATATCTCTATCTGCA-TCTCTCTCAGATA
64771 TATATCTCGAATATCTCTATCTGCA-CTCTCTCAGATA
1 TATATCTCGAATATCTCTATCTGCATCTCTCTCAGATA
*
64808 TATATCTCGACTATCTCTATCT
1 TATATCTCGAATATCTCTATCT
64830 CTCTCTATAG
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
37 33 0.37
38 4 0.04
39 15 0.17
40 8 0.09
41 13 0.14
42 17 0.19
ACGTcount: A:0.24, C:0.28, G:0.06, T:0.42
Consensus pattern (38 bp):
TATATCTCGAATATCTCTATCTGCATCTCTCTCAGATA
Left flanking sequence: Indices 64191 -- 64690
TATCTGGGGGCGGCTATGGCCCGAGAGATGGCCCCCCCCACCCCCCCTCTATAGATTCCCAGATA
GAGAGAGGGGGGGGGGCGCCCTCTCTCTATCTGGGGGTAGTCGGCAGCTACTTCAGATATAGATA
GGCATATATATATACAGATAGGGCGGCCTAGCTGGCCCCAGCTATATAAGACTTTGGGGGGGGCA
ACTCTCTATAGTCGGCACCCCCCCTTATATCTATATGGGCGCCCTATCCCCCCTAGATTCTCTGG
GCCCCCCAGATCTATCTATAGGGCCCCTATATTCTATTATATTCTCTGGAGGGGGGGGGGGGCGA
TAGCCATATAGATCTCTAGGGGGAGGAGCCCTATCTCTATATGGGGGCGGCTATATAGAGTCGGC
ACCCGCCCCTCCCCTAGATCTCTATCTGGCTATCTGGAGATCGAGGGACCCTATAGAGAGATATA
TATCTAGAGATATATCTATATCTCACTCTTCACTCTATCTCTCTC
Right flanking sequence: Indices 64830 -- 65329
CTCTCTATAGATCTAGATCTCTATCTCTCTCTAGAGATCTAGATCTCTCTATAGGCCGCCCCTAT
AGATCCCCTTGCGTTGTCCCGTTCCACTCCGATTCGAAACCCGGGAGTAATAAGAATGAGATGGA
GAAGTCAATCATGTTGGTCGGTGAGCCTAGTGATAGGGGACTATCAAGCTCGGTTCGGAGAGCAC
TTGTTCACTCGGCTTGCTCAATGTTACAGCCTAAATGCCGAACCATCGACCCTACTTGCCCGGAT
GGGTGTTCACCCCAAAGTGTTCCCGGACCGTATGCACACCCCCGTAGGTAACTTAGTGCAACATG
GCAGATTTCATCGAAAGAGATCAGCGGATGAAATAGGAAGTGAATCTCAGTAGGAGGGAACGAAG
TGAATCTCAGTAGGAAGGAACGCCGATACCTATATATGTATATATATCTATATATCAGTGCCGAT
CAATATCAATGAACCATTGAGATTTTGTGGCCCCTATCTAGAATC
Found at i:64849 original size:26 final size:26
Alignment explanation
Indices: 64820--64877 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
64810 TATCTCGACT
*
64820 ATCTCTATCTCTCTCTATAGATCTAG
1 ATCTCTATCTCTCTCTAGAGATCTAG
64846 ATCTCTATCTCTCTCTAGAGATCTAG
1 ATCTCTATCTCTCTCTAGAGATCTAG
64872 ATCTCT
1 ATCTCT
64878 CTATAGGCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.22, C:0.28, G:0.09, T:0.41
Consensus pattern (26 bp):
ATCTCTATCTCTCTCTAGAGATCTAG
Left flanking sequence: Indices 64320 -- 64819
AGGCATATATATATACAGATAGGGCGGCCTAGCTGGCCCCAGCTATATAAGACTTTGGGGGGGGC
AACTCTCTATAGTCGGCACCCCCCCTTATATCTATATGGGCGCCCTATCCCCCCTAGATTCTCTG
GGCCCCCCAGATCTATCTATAGGGCCCCTATATTCTATTATATTCTCTGGAGGGGGGGGGGGGCG
ATAGCCATATAGATCTCTAGGGGGAGGAGCCCTATCTCTATATGGGGGCGGCTATATAGAGTCGG
CACCCGCCCCTCCCCTAGATCTCTATCTGGCTATCTGGAGATCGAGGGACCCTATAGAGAGATAT
ATATCTAGAGATATATCTATATCTCACTCTTCACTCTATCTCTCTCTATATCTCGACTATCTCTA
TCTGTATCTCTCTCAGATATATATCTCTCTCTATATCTCTATCTGCACTCTCTCTCAGATATATA
TCTCGAATATCTCTATCTGCACTCTCTCAGATATATATCTCGACT
Right flanking sequence: Indices 64878 -- 65377
CTATAGGCCGCCCCTATAGATCCCCTTGCGTTGTCCCGTTCCACTCCGATTCGAAACCCGGGAGT
AATAAGAATGAGATGGAGAAGTCAATCATGTTGGTCGGTGAGCCTAGTGATAGGGGACTATCAAG
CTCGGTTCGGAGAGCACTTGTTCACTCGGCTTGCTCAATGTTACAGCCTAAATGCCGAACCATCG
ACCCTACTTGCCCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACCGTATGCACACCCCCGTAGG
TAACTTAGTGCAACATGGCAGATTTCATCGAAAGAGATCAGCGGATGAAATAGGAAGTGAATCTC
AGTAGGAGGGAACGAAGTGAATCTCAGTAGGAAGGAACGCCGATACCTATATATGTATATATATC
TATATATCAGTGCCGATCAATATCAATGAACCATTGAGATTTTGTGGCCCCTATCTAGAATCCTC
AGTTAGCAGAGGAATCTACATAGGGGCTGGCCTTTCGATTCGGTC
Found at i:65219 original size:25 final size:25
Alignment explanation
Indices: 65191--65241 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
65181 GATGAAATAG
*
65191 GAAGTGAATCTCAGTAGGAGGGAAC
1 GAAGTGAATCTCAGTAGGAAGGAAC
65216 GAAGTGAATCTCAGTAGGAAGGAAC
1 GAAGTGAATCTCAGTAGGAAGGAAC
65241 G
1 G
65242 CCGATACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.35, T:0.16
Consensus pattern (25 bp):
GAAGTGAATCTCAGTAGGAAGGAAC
Left flanking sequence: Indices 64691 -- 65190
TATATCTCGACTATCTCTATCTGTATCTCTCTCAGATATATATCTCTCTCTATATCTCTATCTGC
ACTCTCTCTCAGATATATATCTCGAATATCTCTATCTGCACTCTCTCAGATATATATCTCGACTA
TCTCTATCTCTCTCTATAGATCTAGATCTCTATCTCTCTCTAGAGATCTAGATCTCTCTATAGGC
CGCCCCTATAGATCCCCTTGCGTTGTCCCGTTCCACTCCGATTCGAAACCCGGGAGTAATAAGAA
TGAGATGGAGAAGTCAATCATGTTGGTCGGTGAGCCTAGTGATAGGGGACTATCAAGCTCGGTTC
GGAGAGCACTTGTTCACTCGGCTTGCTCAATGTTACAGCCTAAATGCCGAACCATCGACCCTACT
TGCCCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACCGTATGCACACCCCCGTAGGTAACTTAG
TGCAACATGGCAGATTTCATCGAAAGAGATCAGCGGATGAAATAG
Right flanking sequence: Indices 65242 -- 65741
CCGATACCTATATATGTATATATATCTATATATCAGTGCCGATCAATATCAATGAACCATTGAGA
TTTTGTGGCCCCTATCTAGAATCCTCAGTTAGCAGAGGAATCTACATAGGGGCTGGCCTTTCGAT
TCGGTCCGGCTGGCCCTATATCTCTTTCGATTCGGTCCGGAGCCCGTGCGACGGAATGGCTCGTG
CGACGGAATGGGTTTTAACTTTGAAAGATAGAGTTGATAAGATAGTTCAGGGAGGGGGAGGGTGG
CTATAGCCTATGGAGTAGTGGGTAGTGGGTGGCACTCGACCCCATATAGAGATAGGGGTGAAGCC
CTATCTATAACTAGAACTCTCTATGGGGTGGGGGCACTCCCCATAGAGATAGATAAGATATAGAG
CCGAGATAAGATAGAATAGAGAGGGGGGGGGGCCGCCCTCGACATATATCTAGTTGGGCCCTCTC
TATAGTATAGATAGATGGCCCCCCGAGAAGAAGAAGAGATCTGGC
Found at i:66046 original size:27 final size:25
Alignment explanation
Indices: 66008--66078 Score: 142
Period size: 25 Copynumber: 2.8 Consensus size: 25
65998 AGAGATAGGG
66008 CTCTCTATAGAGAGATGGCCCAACC
1 CTCTCTATAGAGAGATGGCCCAACC
66033 CTCTCTATAGAGAGATGGCCCAACC
1 CTCTCTATAGAGAGATGGCCCAACC
66058 CTCTCTATAGAGAGATGGCCC
1 CTCTCTATAGAGAGATGGCCC
66079 CAAAGATCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (25 bp):
CTCTCTATAGAGAGATGGCCCAACC
Left flanking sequence: Indices 65508 -- 66007
CCTATGGAGTAGTGGGTAGTGGGTGGCACTCGACCCCATATAGAGATAGGGGTGAAGCCCTATCT
ATAACTAGAACTCTCTATGGGGTGGGGGCACTCCCCATAGAGATAGATAAGATATAGAGCCGAGA
TAAGATAGAATAGAGAGGGGGGGGGGCCGCCCTCGACATATATCTAGTTGGGCCCTCTCTATAGT
ATAGATAGATGGCCCCCCGAGAAGAAGAAGAGATCTGGCCCCTGAACTATCTTATCTATCCGGCG
ATCTGGGCGCCTATATCTCTATCTGACCCTCACCCTCCAGATCTCTAGTTGGGGGGGCCCCTCTC
TATAGATCAGATCTGGCAGATAGAGAGATTGGGGGCCCTCCTCTCATTCAGATAGGGGCGGGTGA
GTGCAGATAGAGTTGGGGCCCTCCCCCTCCAGATATAGCCCCTCTAAATTGAAAGGGGGGGGGTC
GGGCCTATATCTATAGGGGTCCCTCCTCCCCATATAGAGATAGGG
Right flanking sequence: Indices 66079 -- 66578
CAAAGATCTATAGAGATGGCCCCCTCCCCCCCCCCCCCTCTCTATTCTATTCTATTATATCTCTC
GGCGCCCCTCCCCAGATATAGATAGGGGCCTCTCCTCTCTCATTGCGATGCATCGCTCTCATCAA
TAAGAAAGCCGATCACCGGCGCCCCTCTATCTAATCTAGAGCACCACATCATCCGACGCCCTATG
CCCGGAGACAGACAACGATTGTTCTTCGGGCTCCCCTCCCCGATCCGAACAAACATGGTATCCAT
TATCCGACATCCATAAATCGACTCGGGTCGCATGCTCCATCTCGACAAGGCCATCCATCTCTTAT
CTACTCCTATGCAGCGCCCTATATATCTATATGGCGCCAGTATAGAGATAAAGTTTCAGCAGTAT
AGAGTTAGATAGGACCAGATTGGACCAGACCAGACCAAATAGATCTTATCTTATCTTATCTGATG
TTTATGTTTCTTTGGCCAACCCCCCTGTGGTGGTGGGTGGGGGGT
Found at i:67655 original size:28 final size:28
Alignment explanation
Indices: 67623--67691 Score: 129
Period size: 28 Copynumber: 2.5 Consensus size: 28
67613 AGAGATAGAG
67623 AGATAGGGCGGATTGGACACACCCAGAT
1 AGATAGGGCGGATTGGACACACCCAGAT
*
67651 AGATAGGGCGGATTGGACACACCCATAT
1 AGATAGGGCGGATTGGACACACCCAGAT
67679 AGATAGGGCGGAT
1 AGATAGGGCGGAT
67692 GGGTAGATAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.33, T:0.16
Consensus pattern (28 bp):
AGATAGGGCGGATTGGACACACCCAGAT
Left flanking sequence: Indices 67123 -- 67622
ACTGGTCTATCTATGGGGCACTGTATAGAGATAGCCCACATCATGGCCAACCTCACCCACTGGCC
CTATATATCTATCTTCCTATATCTCCATCTGGGCCCGGGTCGAGGGCATGGATCTGGATAGAGAT
CTATGGTCATGTAGAGATCTCCCATCTAGATAGGGACTAGAGAACTCGACTCATAGATGGATCTC
GACCCCGGCACCATATATAGATAGGGCAACATGACATATGGGGTCGAGGGCCTCTCTCTCTATGG
GGAGATATAGATCTAGATGCTCTCTATCCAATCCCGGTTGCTAGTTGCTAATATCTCGTAGCGAA
TGAACACACCCCCCCCCTCCATATAGATAGGGATAGAGAGATAGGGCGGAGCAGACCCATATAGA
TAGATAGGGCACTACCAGATTGGTGAGATTAGCAATAGATATGGATATGGATAGATAGGCTAGAT
CACCCAACCCGGTTGCCCGTTCGCGGGATAGATAGAGAGATAGAG
Right flanking sequence: Indices 67692 -- 68191
GGGTAGATAGACGGAACCAAACACACGGATTGGACACAACACACCCCCCCCCCTCCATATAGATA
GGGATAGAGAGATAGGGCGGAGCAGACCCATATAGATAGATAGGGCACTACCAGATTGGTTCCAC
TATCTACATAGACAGAGATCTACGTCTATCAGCCTCTATCTCTCAAAGCGATGACTAGAGTTCCG
TCTCGACCGGAGCCTAGAAATATATAGGTATAGGCCAACCCAATATAGAGAGTTAGATTTAGTAG
AGATAGGGGCAACCCGGCACTCTGGTCAATCTCAATCTCTATATGGGGTGGGGGGTGGGTGGGGA
TTGGATAGATAGGGGACTCGACAGAGATAGGGAGATTCGACTCTTCTATTCTCGACTCGACATCT
AAATCTGAATACAGACTGGGCACTCGCCTATCTATCTAGATGGCAAAGCCCTATCTCTCTATCCA
CCCCCGGTTGCCCTATCTATCTCTATCTATGCTCATAAAGAGAAT
Found at i:68909 original size:8 final size:8
Alignment explanation
Indices: 68883--68987 Score: 60
Period size: 8 Copynumber: 13.9 Consensus size: 8
68873 ATCTTATCTG
68883 AGAGAGAT
1 AGAGAGAT
*
68891 ACAGAG-T
1 AGAGAGAT
*
68898 -GAGATAT
1 AGAGAGAT
68905 AGAGAGAT
1 AGAGAGAT
*
68913 AGAGAGAG
1 AGAGAGAT
* * *
68921 AGATACAG
1 AGAGAGAT
*
68929 AGTGAGAT
1 AGAGAGAT
*
68937 ATAGAG--
1 AGAGAGAT
* *
68943 AGATAGAG
1 AGAGAGAT
68951 AGAGAGAT
1 AGAGAGAT
*
68959 ACAGAG-T
1 AGAGAGAT
*
68966 -GAGATAT
1 AGAGAGAT
68973 AGAGAGAT
1 AGAGAGAT
68981 AGAGAGA
1 AGAGAGA
68988 GAGATACAGA
Statistics
Matches: 70, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
6 10 0.14
7 4 0.06
8 56 0.80
ACGTcount: A:0.48, C:0.03, G:0.35, T:0.14
Consensus pattern (8 bp):
AGAGAGAT
Left flanking sequence: Indices 68383 -- 68882
TCCGACGATATGGCACTCCCGAATACAAGCCATAGATAGGGACTAGAGATGGAGCCGAGCCGGTT
GCGACTATTCTATATGGAACTCGCTATCTATAGATATGGGCCGATCTCTATATCCGCAACCGGGC
CGACCCCTCCACTCTATCTGGGTTCCTCTCTATCTTAGCAACCGGGTTGGCCGTATCTATCCCAT
CTAGAGTTGGGTTGGCCGACCCCCCCCCTCTAGATCTATATGGGGTGGGGCTCCCCTATAGAGTA
ATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCCCTGGATATGTGGTATA
GGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCAGATATGGATATAGAGA
GTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGAGAGAGATATATATC
TTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTG
Right flanking sequence: Indices 68988 -- 69487
GAGATACAGAGTGAGAGAGAGACTTCAGATAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGA
CTGAAGATAGAGATATAGAGTTCAGATATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTA
GTCGAGGATAGATAGATAGAGAGAGATATAGAGAGAGAGATAGAGATATAGAGAGAGAGATAGAT
AGATAGAGAGAGATATAGATAGAGAGAGATATAGAGAGATAGATAGATAGTAGTGGCCCGATATA
GAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATCTATAGAGAACAGTATATATAGATAGA
TGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCGCTGATCCGCTTCTATCTCTATATAGA
ACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGCCGAGGGCCATCTATAGCCGGGGGCCG
AGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCACTCGAC
Found at i:68911 original size:22 final size:22
Alignment explanation
Indices: 68883--68998 Score: 124
Period size: 22 Copynumber: 5.2 Consensus size: 22
68873 ATCTTATCTG
* *
68883 AGAGAGATACAGAGTGAGATAT
1 AGAGAGATACAGAGAGAGATAC
*
68905 AGAGAGATAGAGAGAGAGATAC
1 AGAGAGATACAGAGAGAGATAC
* * * *
68927 AGAGTGAGATATAGAGAGATAGAG
1 AGA--GAGATACAGAGAGAGATAC
* *
68951 AGAGAGATACAGAGTGAGATAT
1 AGAGAGATACAGAGAGAGATAC
*
68973 AGAGAGATAGAGAGAGAGATAC
1 AGAGAGATACAGAGAGAGATAC
68995 AGAG
1 AGAG
68999 TGAGAGAGAG
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
22 59 0.77
24 18 0.23
ACGTcount: A:0.47, C:0.03, G:0.35, T:0.14
Consensus pattern (22 bp):
AGAGAGATACAGAGAGAGATAC
Left flanking sequence: Indices 68383 -- 68882
TCCGACGATATGGCACTCCCGAATACAAGCCATAGATAGGGACTAGAGATGGAGCCGAGCCGGTT
GCGACTATTCTATATGGAACTCGCTATCTATAGATATGGGCCGATCTCTATATCCGCAACCGGGC
CGACCCCTCCACTCTATCTGGGTTCCTCTCTATCTTAGCAACCGGGTTGGCCGTATCTATCCCAT
CTAGAGTTGGGTTGGCCGACCCCCCCCCTCTAGATCTATATGGGGTGGGGCTCCCCTATAGAGTA
ATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCCCTGGATATGTGGTATA
GGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCAGATATGGATATAGAGA
GTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGAGAGAGATATATATC
TTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTG
Right flanking sequence: Indices 68999 -- 69498
TGAGAGAGAGACTTCAGATAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGA
GATATAGAGTTCAGATATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAGGATAG
ATAGATAGAGAGAGATATAGAGAGAGAGATAGAGATATAGAGAGAGAGATAGATAGATAGAGAGA
GATATAGATAGAGAGAGATATAGAGAGATAGATAGATAGTAGTGGCCCGATATAGAACTAGTTCT
ATCACCCGTTGGGGCTCTATCTATAATCTATAGAGAACAGTATATATAGATAGATGTTGGGCCCT
CTATATCTATATAGAACAGAACTAGCCGCTGATCCGCTTCTATCTCTATATAGAACCTCTACTCT
CTATATGGGTGGGGTGGGGTGGGGGTGCCGAGGGCCATCTATAGCCGGGGGCCGAGGGCGACTAT
GCTATATAGAGTTTAGTTACAGTCGGCACTCGACCGACTGACGAG
Found at i:68925 original size:34 final size:34
Alignment explanation
Indices: 68882--69003 Score: 244
Period size: 34 Copynumber: 3.6 Consensus size: 34
68872 TATCTTATCT
68882 GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
1 GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
68916 GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
1 GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
68950 GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
1 GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
68984 GAGAGAGATACAGAGTGAGA
1 GAGAGAGATACAGAGTGAGA
69004 GAGAGACTTC
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 88 1.00
ACGTcount: A:0.47, C:0.03, G:0.36, T:0.14
Consensus pattern (34 bp):
GAGAGAGATACAGAGTGAGATATAGAGAGATAGA
Left flanking sequence: Indices 68382 -- 68881
TTCCGACGATATGGCACTCCCGAATACAAGCCATAGATAGGGACTAGAGATGGAGCCGAGCCGGT
TGCGACTATTCTATATGGAACTCGCTATCTATAGATATGGGCCGATCTCTATATCCGCAACCGGG
CCGACCCCTCCACTCTATCTGGGTTCCTCTCTATCTTAGCAACCGGGTTGGCCGTATCTATCCCA
TCTAGAGTTGGGTTGGCCGACCCCCCCCCTCTAGATCTATATGGGGTGGGGCTCCCCTATAGAGT
AATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCCCTGGATATGTGGTAT
AGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCAGATATGGATATAGAG
AGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGAGAGAGATATATAT
CTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCT
Right flanking sequence: Indices 69004 -- 69503
GAGAGACTTCAGATAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGAGATAT
AGAGTTCAGATATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAGGATAGATAGA
TAGAGAGAGATATAGAGAGAGAGATAGAGATATAGAGAGAGAGATAGATAGATAGAGAGAGATAT
AGATAGAGAGAGATATAGAGAGATAGATAGATAGTAGTGGCCCGATATAGAACTAGTTCTATCAC
CCGTTGGGGCTCTATCTATAATCTATAGAGAACAGTATATATAGATAGATGTTGGGCCCTCTATA
TCTATATAGAACAGAACTAGCCGCTGATCCGCTTCTATCTCTATATAGAACCTCTACTCTCTATA
TGGGTGGGGTGGGGTGGGGGTGCCGAGGGCCATCTATAGCCGGGGGCCGAGGGCGACTATGCTAT
ATAGAGTTTAGTTACAGTCGGCACTCGACCGACTGACGAGAGATA
Found at i:69051 original size:12 final size:12
Alignment explanation
Indices: 68882--69052 Score: 120
Period size: 12 Copynumber: 14.7 Consensus size: 12
68872 TATCTTATCT
*
68882 GAGAGAGATACA
1 GAGAGAGATAGA
*
68894 GAGTGAGAT--A
1 GAGAGAGATAGA
*
68904 TAGAGAGATAGA
1 GAGAGAGATAGA
*
68916 GAGAGAGATACA
1 GAGAGAGATAGA
*
68928 GAGTGAGAT--A
1 GAGAGAGATAGA
*
68938 TAGAGAGATAGA
1 GAGAGAGATAGA
*
68950 GAGAGAGATACA
1 GAGAGAGATAGA
*
68962 GAGTGAGAT--A
1 GAGAGAGATAGA
*
68972 TAGAGAGATAGA
1 GAGAGAGATAGA
*
68984 GAGAGAGATACA
1 GAGAGAGATAGA
* *
68996 GAGTGAGAGAGA
1 GAGAGAGATAGA
***
69008 GACTTCAGATAGA
1 GA-GAGAGATAGA
**
69021 GAGAGAGATCTA
1 GAGAGAGATAGA
* *
69033 TATAGAGATAGA
1 GAGAGAGATAGA
69045 GAGAGAGA
1 GAGAGAGA
69053 CTGAAGATAG
Statistics
Matches: 120, Mismatches: 32, Indels: 14
0.72 0.19 0.08
Matches are distributed among these distances:
10 24 0.20
12 87 0.73
13 9 0.08
ACGTcount: A:0.46, C:0.04, G:0.35, T:0.15
Consensus pattern (12 bp):
GAGAGAGATAGA
Left flanking sequence: Indices 68382 -- 68881
TTCCGACGATATGGCACTCCCGAATACAAGCCATAGATAGGGACTAGAGATGGAGCCGAGCCGGT
TGCGACTATTCTATATGGAACTCGCTATCTATAGATATGGGCCGATCTCTATATCCGCAACCGGG
CCGACCCCTCCACTCTATCTGGGTTCCTCTCTATCTTAGCAACCGGGTTGGCCGTATCTATCCCA
TCTAGAGTTGGGTTGGCCGACCCCCCCCCTCTAGATCTATATGGGGTGGGGCTCCCCTATAGAGT
AATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCCCTGGATATGTGGTAT
AGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCAGATATGGATATAGAG
AGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGAGAGAGATATATAT
CTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCT
Right flanking sequence: Indices 69053 -- 69552
CTGAAGATAGAGATATAGAGTTCAGATATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTA
GTCGAGGATAGATAGATAGAGAGAGATATAGAGAGAGAGATAGAGATATAGAGAGAGAGATAGAT
AGATAGAGAGAGATATAGATAGAGAGAGATATAGAGAGATAGATAGATAGTAGTGGCCCGATATA
GAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATCTATAGAGAACAGTATATATAGATAGA
TGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCGCTGATCCGCTTCTATCTCTATATAGA
ACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGCCGAGGGCCATCTATAGCCGGGGGCCG
AGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCACTCGACCGACTGACGAGAGATATTAG
ATATTGCTGCGAGTGCGGCCCCCCGTGGCACTCTCACGGGCACCC
Found at i:69133 original size:4 final size:4
Alignment explanation
Indices: 69124--69232 Score: 74
Period size: 4 Copynumber: 27.2 Consensus size: 4
69114 TCTAGTCGAG
* * * * * * * *
69124 GATA GATA GATA GAGA GAGA TATA GAGA GAGA GATA GAGA TATA GAGA
1 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
* * * * * * * *
69172 GAGA GATA GATA GATA GAGA GAGA TATA GATA GAGA GAGA TATA GAGA
1 GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA GATA
69220 GATA GATA GATA G
1 GATA GATA GATA G
69233 TAGTGGCCCG
Statistics
Matches: 83, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 83 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (4 bp):
GATA
Left flanking sequence: Indices 68624 -- 69123
GGGGCTCCCCTATAGAGTAATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACAC
TCCCTGGATATGTGGTATAGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCT
CCAGATATGGATATAGAGAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGA
GTCGAGAGAGATATATATCTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTGA
GAGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGATATAGAGAGATAG
AGAGAGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGAGAGAGACTTC
AGATAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGAGATATAGAGTTCAGA
TATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAG
Right flanking sequence: Indices 69233 -- 69732
TAGTGGCCCGATATAGAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATCTATAGAGAACA
GTATATATAGATAGATGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCGCTGATCCGCTT
CTATCTCTATATAGAACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGCCGAGGGCCATC
TATAGCCGGGGGCCGAGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCACTCGACCGACT
GACGAGAGATATTAGATATTGCTGCGAGTGCGGCCCCCCGTGGCACTCTCACGGGCACCCCATCT
AGATATGACACATGATATATGGCGTGGCGACCCCCACCCACTCTATTATTGGGATAGGGGAGAGG
GAGGACGAGGAGAGCACTCGGCCGACTGACTATATACATTTATGCGCCGGCGCTATATCCATCTA
TATCTAGTCGGCACCCTATCTATATAGAGATGGCGACGGCCGGGG
Found at i:69154 original size:16 final size:16
Alignment explanation
Indices: 69129--69221 Score: 105
Period size: 16 Copynumber: 5.6 Consensus size: 16
69119 TCGAGGATAG
*
69129 ATAGATAGAGAGAGAT
1 ATAGAGAGAGAGAGAT
69145 ATAGAGAGAGAGATAGAGAT
1 AT--AGAGAGAG--AGAGAT
* *
69165 ATAGAGAGAGAGATAG
1 ATAGAGAGAGAGAGAT
*
69181 ATAGATAGAGAGAGAT
1 ATAGAGAGAGAGAGAT
*
69197 ATAGATAGAGAGAGAT
1 ATAGAGAGAGAGAGAT
69213 ATAGAGAGA
1 ATAGAGAGA
69222 TAGATAGATA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
16 43 0.65
18 15 0.23
20 8 0.12
ACGTcount: A:0.51, C:0.00, G:0.33, T:0.16
Consensus pattern (16 bp):
ATAGAGAGAGAGAGAT
Left flanking sequence: Indices 68629 -- 69128
TCCCCTATAGAGTAATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCCCT
GGATATGTGGTATAGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCAGA
TATGGATATAGAGAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGA
GAGAGATATATATCTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTGAGAGAG
ATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGATATAGAGAGATAGAGAGA
GAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGAGAGAGACTTCAGATA
GAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGAGATATAGAGTTCAGATATAG
GGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAGGATAG
Right flanking sequence: Indices 69222 -- 69721
TAGATAGATAGTAGTGGCCCGATATAGAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATC
TATAGAGAACAGTATATATAGATAGATGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCG
CTGATCCGCTTCTATCTCTATATAGAACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGC
CGAGGGCCATCTATAGCCGGGGGCCGAGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCA
CTCGACCGACTGACGAGAGATATTAGATATTGCTGCGAGTGCGGCCCCCCGTGGCACTCTCACGG
GCACCCCATCTAGATATGACACATGATATATGGCGTGGCGACCCCCACCCACTCTATTATTGGGA
TAGGGGAGAGGGAGGACGAGGAGAGCACTCGGCCGACTGACTATATACATTTATGCGCCGGCGCT
ATATCCATCTATATCTAGTCGGCACCCTATCTATATAGAGATGGC
Found at i:69162 original size:20 final size:20
Alignment explanation
Indices: 69125--69225 Score: 102
Period size: 20 Copynumber: 5.2 Consensus size: 20
69115 CTAGTCGAGG
* * *
69125 ATAGATAGATAGAGAGAGAT
1 ATAGAGAGAGAGATAGAGAT
69145 ATAGAGAGAGAGATAGAGAT
1 ATAGAGAGAGAGATAGAGAT
69165 ATAGAGAGAGAGAT--AGAT
1 ATAGAGAGAGAGATAGAGAT
* * *
69183 AGATAGAGAGAGATATAG--
1 ATAGAGAGAGAGATAGAGAT
* *
69201 ATAGAGAGAGATATAGAGAG
1 ATAGAGAGAGAGATAGAGAT
69221 ATAGA
1 ATAGA
69226 TAGATAGTAG
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
18 30 0.44
20 38 0.56
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (20 bp):
ATAGAGAGAGAGATAGAGAT
Left flanking sequence: Indices 68625 -- 69124
GGGCTCCCCTATAGAGTAATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACT
CCCTGGATATGTGGTATAGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTC
CAGATATGGATATAGAGAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAG
TCGAGAGAGATATATATCTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTGAG
AGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGATATAGAGAGATAGA
GAGAGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGAGAGAGACTTCA
GATAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGAGATATAGAGTTCAGAT
ATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAGG
Right flanking sequence: Indices 69226 -- 69725
TAGATAGTAGTGGCCCGATATAGAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATCTATA
GAGAACAGTATATATAGATAGATGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCGCTGA
TCCGCTTCTATCTCTATATAGAACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGCCGAG
GGCCATCTATAGCCGGGGGCCGAGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCACTCG
ACCGACTGACGAGAGATATTAGATATTGCTGCGAGTGCGGCCCCCCGTGGCACTCTCACGGGCAC
CCCATCTAGATATGACACATGATATATGGCGTGGCGACCCCCACCCACTCTATTATTGGGATAGG
GGAGAGGGAGGACGAGGAGAGCACTCGGCCGACTGACTATATACATTTATGCGCCGGCGCTATAT
CCATCTATATCTAGTCGGCACCCTATCTATATAGAGATGGCGACG
Found at i:69228 original size:12 final size:12
Alignment explanation
Indices: 69127--69229 Score: 97
Period size: 12 Copynumber: 8.9 Consensus size: 12
69117 AGTCGAGGAT
69127 AGATAGATAGAG
1 AGATAGATAGAG
* *
69139 AGAGATATAGAG
1 AGATAGATAGAG
*
69151 AGAGAGAT--AG
1 AGATAGATAGAG
69161 AGAT--ATAGAG
1 AGATAGATAGAG
* *
69171 AGAGAGATAGAT
1 AGATAGATAGAG
*
69183 AGATAGAGAGAG
1 AGATAGATAGAG
*
69195 ATATAGATAGAG
1 AGATAGATAGAG
* *
69207 AGAGATATAGAG
1 AGATAGATAGAG
69219 AGATAGATAGA
1 AGATAGATAGA
69230 TAGTAGTGGC
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
8 2 0.03
10 10 0.14
12 59 0.83
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (12 bp):
AGATAGATAGAG
Left flanking sequence: Indices 68627 -- 69126
GCTCCCCTATAGAGTAATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCC
CTGGATATGTGGTATAGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCA
GATATGGATATAGAGAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTC
GAGAGAGATATATATCTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTGAGAG
AGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGATATAGAGAGATAGAGA
GAGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGAGAGAGACTTCAGA
TAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGAGATATAGAGTTCAGATAT
AGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAGGAT
Right flanking sequence: Indices 69230 -- 69729
TAGTAGTGGCCCGATATAGAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATCTATAGAGA
ACAGTATATATAGATAGATGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCGCTGATCCG
CTTCTATCTCTATATAGAACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGCCGAGGGCC
ATCTATAGCCGGGGGCCGAGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCACTCGACCG
ACTGACGAGAGATATTAGATATTGCTGCGAGTGCGGCCCCCCGTGGCACTCTCACGGGCACCCCA
TCTAGATATGACACATGATATATGGCGTGGCGACCCCCACCCACTCTATTATTGGGATAGGGGAG
AGGGAGGACGAGGAGAGCACTCGGCCGACTGACTATATACATTTATGCGCCGGCGCTATATCCAT
CTATATCTAGTCGGCACCCTATCTATATAGAGATGGCGACGGCCG
Found at i:69232 original size:16 final size:16
Alignment explanation
Indices: 69124--69232 Score: 100
Period size: 16 Copynumber: 6.8 Consensus size: 16
69114 TCTAGTCGAG
69124 GATAGATAGATAGAGA
1 GATAGATAGATAGAGA
* * *
69140 GAGATATAGAGAGAGA
1 GATAGATAGATAGAGA
*
69156 GATAGAGATATAGAGAGAGA
1 GAT--AG--ATAGATAGAGA
69176 GATAGATAGATAGAGA
1 GATAGATAGATAGAGA
* *
69192 GAGATATAGATAGAGA
1 GATAGATAGATAGAGA
69208 G--AGAT--ATAGAGA
1 GATAGATAGATAGAGA
69220 GATAGATAGATAG
1 GATAGATAGATAG
69233 TAGTGGCCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
12 8 0.11
14 7 0.09
16 44 0.58
18 3 0.04
20 14 0.18
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (16 bp):
GATAGATAGATAGAGA
Left flanking sequence: Indices 68624 -- 69123
GGGGCTCCCCTATAGAGTAATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACAC
TCCCTGGATATGTGGTATAGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCT
CCAGATATGGATATAGAGAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGA
GTCGAGAGAGATATATATCTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTGA
GAGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGATATAGAGAGATAG
AGAGAGAGATACAGAGTGAGATATAGAGAGATAGAGAGAGAGATACAGAGTGAGAGAGAGACTTC
AGATAGAGAGAGAGATCTATATAGAGATAGAGAGAGAGACTGAAGATAGAGATATAGAGTTCAGA
TATAGGGGCCTCAGTCTCCTGCAGCAGGTTTAGTCTCTAGTCGAG
Right flanking sequence: Indices 69233 -- 69732
TAGTGGCCCGATATAGAACTAGTTCTATCACCCGTTGGGGCTCTATCTATAATCTATAGAGAACA
GTATATATAGATAGATGTTGGGCCCTCTATATCTATATAGAACAGAACTAGCCGCTGATCCGCTT
CTATCTCTATATAGAACCTCTACTCTCTATATGGGTGGGGTGGGGTGGGGGTGCCGAGGGCCATC
TATAGCCGGGGGCCGAGGGCGACTATGCTATATAGAGTTTAGTTACAGTCGGCACTCGACCGACT
GACGAGAGATATTAGATATTGCTGCGAGTGCGGCCCCCCGTGGCACTCTCACGGGCACCCCATCT
AGATATGACACATGATATATGGCGTGGCGACCCCCACCCACTCTATTATTGGGATAGGGGAGAGG
GAGGACGAGGAGAGCACTCGGCCGACTGACTATATACATTTATGCGCCGGCGCTATATCCATCTA
TATCTAGTCGGCACCCTATCTATATAGAGATGGCGACGGCCGGGG
Found at i:70217 original size:5 final size:5
Alignment explanation
Indices: 70209--70248 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
70199 AGAGATATAT
70209 AGGCC AGGCC AGGCC AGGCC AGGCC AGGCC AGGCC AGGCC
1 AGGCC AGGCC AGGCC AGGCC AGGCC AGGCC AGGCC AGGCC
70249 TCGCTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.40, G:0.40, T:0.00
Consensus pattern (5 bp):
AGGCC
Left flanking sequence: Indices 69709 -- 70208
ATATAGAGATGGCGACGGCCGGGGGAGAGGGGGGGGGGGCGATGGCGGCTCTCTATAATGGGAGA
TGGGCCCCCCTATATAGATTCTAGATATGGGGCCCCTCTATCTATATCGTTCGTGATACGACTGA
TGACTGACTGACTGACTGATATCTATCGCGTATCATAATGGATGGGCGTGTCTCCCTTCCCTATA
TATAGATATGGCCGGTCGGAGAAGACTTGATCTGAGTGGCCCCCATGGGCACTCATGTCACGTAT
AGAATAGGTCATATGCGGCCCTACCTATCTATATATCGCAATCACTCAACCCCATAGATATAGAT
GGGGGCCGAGGCCATAGAGAGTTCTAGGGGAAGCTCTATACTCCATAGCGAACAGAGTAGATAGA
TATAGGGGGGCCGACCCATATCCATATAGAGATAGATAGGGGCCCCCCTATGACGATATGGGAGA
TAGTCGGGTATATAGACAGTAGTTTCTCCCAGAGAAGAGATATAT
Right flanking sequence: Indices 70249 -- 70748
TCGCTATAGATATAGAATAGATAGCCTTCGGGGCCTATCTTATCTAGTTCTAGTTCCGACTCGAC
GCCCTCGAGCCCAGCTATAGTAGGCCGTCGCCAGCCATATATCTGTCTGTCTGGGGTCGAGTGCC
CATATAGAGAGTTCAGGGCCCAGCTAGACTATAGACTGGTCGCCATAGGGTAGGGTGCTGACTAT
AGATATAGAGAGTTTTCCTCGATCTATCGAGAGTAGGGGGGTAAGAGTCTATCCTATATCCTATC
CTTCCGTCTGAGAATAGCCACAGGGGTAGGGGCTCCTATCCTCTCTCTCTATTCTATCCCCGGGC
TGTGGGCATAGACACAATACAGTTCACAGAGAGATTCCCTCCTATCTAGTTGGGGTCTCTCGAGT
CAAGTCGAGTTTGTCTAGTCTAAGGAATCCATCCCCATAGGCCTCCCTCTCTATAGAATCTTGGC
CCCCAGAGTGGGAGAGGGGCCCTATGCCCTAGACCCTCTACCCCA
Found at i:71507 original size:4 final size:4
Alignment explanation
Indices: 71498--71596 Score: 63
Period size: 4 Copynumber: 24.8 Consensus size: 4
71488 TCCCCCATAT
* * * * * * *
71498 AGAG AGAG AGAT AGAT AGAG AGAG AGAG ATAT AGAG AGAG ATAT AGAT
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * * * *
71546 AGAT AGAT AGAG ATAT AGAG AGAG AGAG AGAT AGAT AGAG ATAT AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
71594 AGA
1 AGA
71597 TATCTATATC
Statistics
Matches: 75, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 75 1.00
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.15
Consensus pattern (4 bp):
AGAG
Left flanking sequence: Indices 70998 -- 71497
TAAGGGCCTATCGGCACTCGCAGCAAATAGAGTCTAGTCCCAGGGATAGGGGAAGGCAGGCCGGA
GCGTATGGCCCAATAGGAATAGAATAAGGCAGGCACGATAGCTCGAGTGCCGAAGGCCGGGCTAG
TGAGTGCCCCCTATCTCTACTCGGGGGTCCGTTGGTTGATTGAGCTGGGGCCCCTATCTAGAATC
CATATATGGGAGGCCGATATCTATAACTCTATATGGGGTGGGGGCTCTCGACCGATATAGAGAGT
TATAGTTCCGGAGAAAGGCTTAGGATTGGAAACTACTCTACTAGACAACTGATTGAAGACGAAGG
AGGGCGAGGCCCTATCTGTATATGACTCGATCGATTTGGAATGAATGGCTCACCGCCCCATCTCA
CTATATGGCGATAGGTTGGTTCCCATATAGAGAGATGGGGCCTCTCTATATCTTATCTAGATCTG
GGGAGGCCCGCCCGGCTCATCGGCTCACGGATATATCCCCCATAT
Right flanking sequence: Indices 71597 -- 72096
TATCTATATCTATCTATATAGGTCCCAAGGCAAGGGGATATGGCACTTTAGAGGGCCTATCGCCT
ATCTATCTAGGGGGAGGGGCGCATATAGATAAGATAATGACCCCCGGCCCCAACCCCCTATCTAT
ATATGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGCATTCCCCCAT
CTATATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTCCCCCCCCCTA
TTCTATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGGAGCCCCATAT
CGTCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTGCCCGGGCATA
TAGAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGGGGATCTGATC
TCACCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCC
Found at i:71517 original size:12 final size:12
Alignment explanation
Indices: 71496--71598 Score: 71
Period size: 12 Copynumber: 8.2 Consensus size: 12
71486 TATCCCCCAT
*
71496 ATAGAGAGAGAG
1 ATAGATAGAGAG
71508 ATAGATAGAGAGAG
1 ATAGAT--AGAGAG
*
71522 AGAGATATAGAGAG
1 ATAG--ATAGAGAG
* * *
71536 AGATATAGATAG
1 ATAGATAGAGAG
*
71548 ATAGATAGAGAT
1 ATAGATAGAGAG
*
71560 ATAGAGAGAGAG
1 ATAGATAGAGAG
* *
71572 AGAGATAGATAG
1 ATAGATAGAGAG
* *
71584 AGATATAGAGAG
1 ATAGATAGAGAG
71596 ATA
1 ATA
71599 TCTATATCTA
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
12 51 0.72
14 18 0.25
16 2 0.03
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (12 bp):
ATAGATAGAGAG
Left flanking sequence: Indices 70996 -- 71495
GATAAGGGCCTATCGGCACTCGCAGCAAATAGAGTCTAGTCCCAGGGATAGGGGAAGGCAGGCCG
GAGCGTATGGCCCAATAGGAATAGAATAAGGCAGGCACGATAGCTCGAGTGCCGAAGGCCGGGCT
AGTGAGTGCCCCCTATCTCTACTCGGGGGTCCGTTGGTTGATTGAGCTGGGGCCCCTATCTAGAA
TCCATATATGGGAGGCCGATATCTATAACTCTATATGGGGTGGGGGCTCTCGACCGATATAGAGA
GTTATAGTTCCGGAGAAAGGCTTAGGATTGGAAACTACTCTACTAGACAACTGATTGAAGACGAA
GGAGGGCGAGGCCCTATCTGTATATGACTCGATCGATTTGGAATGAATGGCTCACCGCCCCATCT
CACTATATGGCGATAGGTTGGTTCCCATATAGAGAGATGGGGCCTCTCTATATCTTATCTAGATC
TGGGGAGGCCCGCCCGGCTCATCGGCTCACGGATATATCCCCCAT
Right flanking sequence: Indices 71599 -- 72098
TCTATATCTATCTATATAGGTCCCAAGGCAAGGGGATATGGCACTTTAGAGGGCCTATCGCCTAT
CTATCTAGGGGGAGGGGCGCATATAGATAAGATAATGACCCCCGGCCCCAACCCCCTATCTATAT
ATGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGCATTCCCCCATCT
ATATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTCCCCCCCCCTATT
CTATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGGAGCCCCATATCG
TCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTGCCCGGGCATATA
GAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGGGGATCTGATCTC
ACCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCCCT
Found at i:71519 original size:14 final size:14
Alignment explanation
Indices: 71500--71586 Score: 88
Period size: 14 Copynumber: 6.4 Consensus size: 14
71490 CCCCATATAG
71500 AGAGAGAGATAGAT
1 AGAGAGAGATAGAT
*
71514 AGAGAGAGAGAGAT
1 AGAGAGAGATAGAT
*
71528 ATAGAGAG--AGAT
1 AGAGAGAGATAGAT
* *
71540 ATAGATAGATAGAT
1 AGAGAGAGATAGAT
* * * *
71554 AGAGATATAGAGAG
1 AGAGAGAGATAGAT
71568 AGAGAGAGATAGAT
1 AGAGAGAGATAGAT
71582 AGAGA
1 AGAGA
71587 TATAGAGAGA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
12 11 0.18
14 49 0.82
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.15
Consensus pattern (14 bp):
AGAGAGAGATAGAT
Left flanking sequence: Indices 71000 -- 71499
AGGGCCTATCGGCACTCGCAGCAAATAGAGTCTAGTCCCAGGGATAGGGGAAGGCAGGCCGGAGC
GTATGGCCCAATAGGAATAGAATAAGGCAGGCACGATAGCTCGAGTGCCGAAGGCCGGGCTAGTG
AGTGCCCCCTATCTCTACTCGGGGGTCCGTTGGTTGATTGAGCTGGGGCCCCTATCTAGAATCCA
TATATGGGAGGCCGATATCTATAACTCTATATGGGGTGGGGGCTCTCGACCGATATAGAGAGTTA
TAGTTCCGGAGAAAGGCTTAGGATTGGAAACTACTCTACTAGACAACTGATTGAAGACGAAGGAG
GGCGAGGCCCTATCTGTATATGACTCGATCGATTTGGAATGAATGGCTCACCGCCCCATCTCACT
ATATGGCGATAGGTTGGTTCCCATATAGAGAGATGGGGCCTCTCTATATCTTATCTAGATCTGGG
GAGGCCCGCCCGGCTCATCGGCTCACGGATATATCCCCCATATAG
Right flanking sequence: Indices 71587 -- 72086
TATAGAGAGATATCTATATCTATCTATATAGGTCCCAAGGCAAGGGGATATGGCACTTTAGAGGG
CCTATCGCCTATCTATCTAGGGGGAGGGGCGCATATAGATAAGATAATGACCCCCGGCCCCAACC
CCCTATCTATATATGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGC
ATTCCCCCATCTATATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTC
CCCCCCCCTATTCTATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGG
AGCCCCATATCGTCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTG
CCCGGGCATATAGAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGG
GGATCTGATCTCACCTCTAATTAACCAAACCAGGTTGAGCCCGAC
Found at i:71530 original size:32 final size:32
Alignment explanation
Indices: 71494--71586 Score: 150
Period size: 32 Copynumber: 2.9 Consensus size: 32
71484 TATATCCCCC
*
71494 ATATAGAGAGAGAGATAGATAGAGAGAGAGAG
1 ATATAGAGAGAGAGATAGATAGATAGAGAGAG
* *
71526 ATATAGAGAGAGATATAGATAGATAGATAGAG
1 ATATAGAGAGAGAGATAGATAGATAGAGAGAG
*
71558 ATATAGAGAGAGAGAGAGATAGATAGAGA
1 ATATAGAGAGAGAGATAGATAGATAGAGA
71587 TATAGAGAGA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.33, T:0.16
Consensus pattern (32 bp):
ATATAGAGAGAGAGATAGATAGATAGAGAGAG
Left flanking sequence: Indices 70994 -- 71493
GGGATAAGGGCCTATCGGCACTCGCAGCAAATAGAGTCTAGTCCCAGGGATAGGGGAAGGCAGGC
CGGAGCGTATGGCCCAATAGGAATAGAATAAGGCAGGCACGATAGCTCGAGTGCCGAAGGCCGGG
CTAGTGAGTGCCCCCTATCTCTACTCGGGGGTCCGTTGGTTGATTGAGCTGGGGCCCCTATCTAG
AATCCATATATGGGAGGCCGATATCTATAACTCTATATGGGGTGGGGGCTCTCGACCGATATAGA
GAGTTATAGTTCCGGAGAAAGGCTTAGGATTGGAAACTACTCTACTAGACAACTGATTGAAGACG
AAGGAGGGCGAGGCCCTATCTGTATATGACTCGATCGATTTGGAATGAATGGCTCACCGCCCCAT
CTCACTATATGGCGATAGGTTGGTTCCCATATAGAGAGATGGGGCCTCTCTATATCTTATCTAGA
TCTGGGGAGGCCCGCCCGGCTCATCGGCTCACGGATATATCCCCC
Right flanking sequence: Indices 71587 -- 72086
TATAGAGAGATATCTATATCTATCTATATAGGTCCCAAGGCAAGGGGATATGGCACTTTAGAGGG
CCTATCGCCTATCTATCTAGGGGGAGGGGCGCATATAGATAAGATAATGACCCCCGGCCCCAACC
CCCTATCTATATATGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGC
ATTCCCCCATCTATATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTC
CCCCCCCCTATTCTATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGG
AGCCCCATATCGTCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTG
CCCGGGCATATAGAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGG
GGATCTGATCTCACCTCTAATTAACCAAACCAGGTTGAGCCCGAC
Found at i:71533 original size:10 final size:10
Alignment explanation
Indices: 71500--71599 Score: 78
Period size: 10 Copynumber: 10.0 Consensus size: 10
71490 CCCCATATAG
*
71500 AGAGAGAGAT
1 AGAGAGATAT
* * *
71510 AGATAGAGAG
1 AGAGAGATAT
71520 AGAGAGATAT
1 AGAGAGATAT
71530 AGAGAGAGATAT
1 --AGAGAGATAT
* *
71542 AGATAGATAG
1 AGAGAGATAT
*
71552 ATAGAGATAT
1 AGAGAGATAT
*
71562 AGAGAG--AG
1 AGAGAGATAT
*
71570 AGAGAGATAG
1 AGAGAGATAT
*
71580 ATAGAGATAT
1 AGAGAGATAT
71590 AGAGAGATAT
1 AGAGAGATAT
71600 CTATATCTAT
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
8 7 0.10
10 54 0.76
12 10 0.14
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (10 bp):
AGAGAGATAT
Left flanking sequence: Indices 71000 -- 71499
AGGGCCTATCGGCACTCGCAGCAAATAGAGTCTAGTCCCAGGGATAGGGGAAGGCAGGCCGGAGC
GTATGGCCCAATAGGAATAGAATAAGGCAGGCACGATAGCTCGAGTGCCGAAGGCCGGGCTAGTG
AGTGCCCCCTATCTCTACTCGGGGGTCCGTTGGTTGATTGAGCTGGGGCCCCTATCTAGAATCCA
TATATGGGAGGCCGATATCTATAACTCTATATGGGGTGGGGGCTCTCGACCGATATAGAGAGTTA
TAGTTCCGGAGAAAGGCTTAGGATTGGAAACTACTCTACTAGACAACTGATTGAAGACGAAGGAG
GGCGAGGCCCTATCTGTATATGACTCGATCGATTTGGAATGAATGGCTCACCGCCCCATCTCACT
ATATGGCGATAGGTTGGTTCCCATATAGAGAGATGGGGCCTCTCTATATCTTATCTAGATCTGGG
GAGGCCCGCCCGGCTCATCGGCTCACGGATATATCCCCCATATAG
Right flanking sequence: Indices 71600 -- 72099
CTATATCTATCTATATAGGTCCCAAGGCAAGGGGATATGGCACTTTAGAGGGCCTATCGCCTATC
TATCTAGGGGGAGGGGCGCATATAGATAAGATAATGACCCCCGGCCCCAACCCCCTATCTATATA
TGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGCATTCCCCCATCTA
TATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTCCCCCCCCCTATTC
TATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGGAGCCCCATATCGT
CATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTGCCCGGGCATATAG
AATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGGGGATCTGATCTCA
CCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCCCTA
Found at i:72245 original size:6 final size:6
Alignment explanation
Indices: 72229--72281 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
72219 GACCCCTATC
* * * * *
72229 TATATA GATATA TATATA TAGATA TAGATA TATCTA TATAGA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
72277 TATAT
1 TATAT
72282 GGCGAAGTGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (6 bp):
TATATA
Left flanking sequence: Indices 71729 -- 72228
ATGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGCATTCCCCCATCT
ATATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTCCCCCCCCCTATT
CTATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGGAGCCCCATATCG
TCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTGCCCGGGCATATA
GAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGGGGATCTGATCTC
ACCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCCCTATATACAGATAGGCGGGCCC
TAACCTATATAGGCCATTGTCGACTACCGCTCTGCCCCGGAGTCACGTCATCACGAGGTTTCGTT
TCCGTATGGTCTGCATGCCGGGCGTATCTAGCTCGGACCCCTATC
Right flanking sequence: Indices 72282 -- 72781
GGCGAAGTGTGCGTTTCCTTTCCATCCTTTCTCTCGTTCTACTCCACTCCCACTCCCCCTCCCCC
TCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTAATGGTGG
CTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGGGTGGCTCTGGAAT
ATTTGTATTACATATATAATAGAATATAATAGAATATCCCATTTGTATCATATAGAATATCCTAT
CCTATTTGCCCTTCTGTTTCTATAGGGCATATGGAATATCATATTTGTATTACAGATCCAATTGT
TACCCGCCTTTCTTGCTACTTAAATGAGACCCGGGGTCGGGTCGTCCAGGTTCTGCGGATTTCTC
CCTGTGCCTTCTATTAGAACAGAACACGGAACTCACTACTCCATCGGAGAAAAGGATTACCGACT
ACAGCACCGATCTAAAGGTTGATGAGATCGGTCGAGTGGTCCCAG
Found at i:72248 original size:14 final size:14
Alignment explanation
Indices: 72229--72281 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
72219 GACCCCTATC
*
72229 TATATAGATATATA
1 TATATAGATATAGA
72243 TATATAGATATAGA
1 TATATAGATATAGA
**
72257 TATATCTATATAGA
1 TATATAGATATAGA
*
72271 TATATATATAT
1 TATATAGATAT
72282 GGCGAAGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (14 bp):
TATATAGATATAGA
Left flanking sequence: Indices 71729 -- 72228
ATGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGCATTCCCCCATCT
ATATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTCCCCCCCCCTATT
CTATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGGAGCCCCATATCG
TCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTGCCCGGGCATATA
GAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGGGGATCTGATCTC
ACCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCCCTATATACAGATAGGCGGGCCC
TAACCTATATAGGCCATTGTCGACTACCGCTCTGCCCCGGAGTCACGTCATCACGAGGTTTCGTT
TCCGTATGGTCTGCATGCCGGGCGTATCTAGCTCGGACCCCTATC
Right flanking sequence: Indices 72282 -- 72781
GGCGAAGTGTGCGTTTCCTTTCCATCCTTTCTCTCGTTCTACTCCACTCCCACTCCCCCTCCCCC
TCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTAATGGTGG
CTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGGGTGGCTCTGGAAT
ATTTGTATTACATATATAATAGAATATAATAGAATATCCCATTTGTATCATATAGAATATCCTAT
CCTATTTGCCCTTCTGTTTCTATAGGGCATATGGAATATCATATTTGTATTACAGATCCAATTGT
TACCCGCCTTTCTTGCTACTTAAATGAGACCCGGGGTCGGGTCGTCCAGGTTCTGCGGATTTCTC
CCTGTGCCTTCTATTAGAACAGAACACGGAACTCACTACTCCATCGGAGAAAAGGATTACCGACT
ACAGCACCGATCTAAAGGTTGATGAGATCGGTCGAGTGGTCCCAG
Found at i:72255 original size:20 final size:20
Alignment explanation
Indices: 72230--72281 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
72220 ACCCCTATCT
72230 ATATAGATATATATATATAG
1 ATATAGATATATATATATAG
*
72250 ATATAGATATATCTATATAG
1 ATATAGATATATATATATAG
*
72270 ATATATATATAT
1 ATATAGATATAT
72282 GGCGAAGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (20 bp):
ATATAGATATATATATATAG
Left flanking sequence: Indices 71730 -- 72229
TGATATATGGGGGAAAGGTCCATATATCTAGAGGGGGCCTATAGAGGGGTGCATTCCCCCATCTA
TATACTCTCTCTCTCTATATCTCTCCCTATAGATCTATCTGGGCGGCCCCTCCCCCCCCCTATTC
TATCTTATCTTATCTCATCTAATCTCTCTGGGGCGCCTATCTAGATATAGGGAGCCCCATATCGT
CATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGGTTTGCCCGGGCATATAG
AATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTCGAGGGGATCTGATCTCA
CCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCCCTATATACAGATAGGCGGGCCCT
AACCTATATAGGCCATTGTCGACTACCGCTCTGCCCCGGAGTCACGTCATCACGAGGTTTCGTTT
CCGTATGGTCTGCATGCCGGGCGTATCTAGCTCGGACCCCTATCT
Right flanking sequence: Indices 72282 -- 72781
GGCGAAGTGTGCGTTTCCTTTCCATCCTTTCTCTCGTTCTACTCCACTCCCACTCCCCCTCCCCC
TCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTAATGGTGG
CTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGGGTGGCTCTGGAAT
ATTTGTATTACATATATAATAGAATATAATAGAATATCCCATTTGTATCATATAGAATATCCTAT
CCTATTTGCCCTTCTGTTTCTATAGGGCATATGGAATATCATATTTGTATTACAGATCCAATTGT
TACCCGCCTTTCTTGCTACTTAAATGAGACCCGGGGTCGGGTCGTCCAGGTTCTGCGGATTTCTC
CCTGTGCCTTCTATTAGAACAGAACACGGAACTCACTACTCCATCGGAGAAAAGGATTACCGACT
ACAGCACCGATCTAAAGGTTGATGAGATCGGTCGAGTGGTCCCAG
Found at i:72336 original size:6 final size:6
Alignment explanation
Indices: 72328--72402 Score: 141
Period size: 6 Copynumber: 12.5 Consensus size: 6
72318 TTCTACTCCA
*
72328 CTCCCA CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC
1 CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC CTCCCC
72376 CTCCCC CTCCCC CTCCCC CTCCCC CTC
1 CTCCCC CTCCCC CTCCCC CTCCCC CTC
72403 TAATGGTGGC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 68 1.00
ACGTcount: A:0.01, C:0.81, G:0.00, T:0.17
Consensus pattern (6 bp):
CTCCCC
Left flanking sequence: Indices 71828 -- 72327
TCTATCTGGGCGGCCCCTCCCCCCCCCTATTCTATCTTATCTTATCTCATCTAATCTCTCTGGGG
CGCCTATCTAGATATAGGGAGCCCCATATCGTCATAGGGGCTGGACTGGACTAGAGATTCCATTC
ACTCATTAATCTAGGTTTGCCCGGGCATATAGAATAGAGATCGTCTGACCCGGCCCATCTAGATA
TAGGGGATGCCTTTCGAGGGGATCTGATCTCACCTCTAATTAACCAAACCAGGTTGAGCCCGACT
TCACATGCCCTATATACAGATAGGCGGGCCCTAACCTATATAGGCCATTGTCGACTACCGCTCTG
CCCCGGAGTCACGTCATCACGAGGTTTCGTTTCCGTATGGTCTGCATGCCGGGCGTATCTAGCTC
GGACCCCTATCTATATAGATATATATATATAGATATAGATATATCTATATAGATATATATATATG
GCGAAGTGTGCGTTTCCTTTCCATCCTTTCTCTCGTTCTACTCCA
Right flanking sequence: Indices 72403 -- 72902
TAATGGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGGGTGG
CTCTGGAATATTTGTATTACATATATAATAGAATATAATAGAATATCCCATTTGTATCATATAGA
ATATCCTATCCTATTTGCCCTTCTGTTTCTATAGGGCATATGGAATATCATATTTGTATTACAGA
TCCAATTGTTACCCGCCTTTCTTGCTACTTAAATGAGACCCGGGGTCGGGTCGTCCAGGTTCTGC
GGATTTCTCCCTGTGCCTTCTATTAGAACAGAACACGGAACTCACTACTCCATCGGAGAAAAGGA
TTACCGACTACAGCACCGATCTAAAGGTTGATGAGATCGGTCGAGTGGTCCCAGTTGGAGATGGG
ATTGCACGTGTCTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTCGAATTTGCCAGCGGTGT
GAAAGGAATAGCGTTGAATCCTGAGAATGAGAATGTGGGTATCGT
Found at i:72417 original size:6 final size:6
Alignment explanation
Indices: 72408--72462 Score: 110
Period size: 6 Copynumber: 9.2 Consensus size: 6
72398 CCCTCTAATG
72408 GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT
1 GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT GTGGCT
72456 GTGGCT G
1 GTGGCT G
72463 GGTGGCTCTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.00, C:0.16, G:0.51, T:0.33
Consensus pattern (6 bp):
GTGGCT
Left flanking sequence: Indices 71908 -- 72407
AGGGAGCCCCATATCGTCATAGGGGCTGGACTGGACTAGAGATTCCATTCACTCATTAATCTAGG
TTTGCCCGGGCATATAGAATAGAGATCGTCTGACCCGGCCCATCTAGATATAGGGGATGCCTTTC
GAGGGGATCTGATCTCACCTCTAATTAACCAAACCAGGTTGAGCCCGACTTCACATGCCCTATAT
ACAGATAGGCGGGCCCTAACCTATATAGGCCATTGTCGACTACCGCTCTGCCCCGGAGTCACGTC
ATCACGAGGTTTCGTTTCCGTATGGTCTGCATGCCGGGCGTATCTAGCTCGGACCCCTATCTATA
TAGATATATATATATAGATATAGATATATCTATATAGATATATATATATGGCGAAGTGTGCGTTT
CCTTTCCATCCTTTCTCTCGTTCTACTCCACTCCCACTCCCCCTCCCCCTCCCCCTCCCCCTCCC
CCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCTCTAATG
Right flanking sequence: Indices 72463 -- 72962
GGTGGCTCTGGAATATTTGTATTACATATATAATAGAATATAATAGAATATCCCATTTGTATCAT
ATAGAATATCCTATCCTATTTGCCCTTCTGTTTCTATAGGGCATATGGAATATCATATTTGTATT
ACAGATCCAATTGTTACCCGCCTTTCTTGCTACTTAAATGAGACCCGGGGTCGGGTCGTCCAGGT
TCTGCGGATTTCTCCCTGTGCCTTCTATTAGAACAGAACACGGAACTCACTACTCCATCGGAGAA
AAGGATTACCGACTACAGCACCGATCTAAAGGTTGATGAGATCGGTCGAGTGGTCCCAGTTGGAG
ATGGGATTGCACGTGTCTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTCGAATTTGCCAGC
GGTGTGAAAGGAATAGCGTTGAATCCTGAGAATGAGAATGTGGGTATCGTTGTATTCGGTAACGA
CGTTGCCATAAAAGAGGGAGATCTGGTCAAGCGGACTGGATCTAT
Done.