Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068217
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1678054
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 1 of 2
Found at i:340 original size:22 final size:22
Alignment explanation
Indices: 310--353 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
300 AAAGATCACC
*
310 AAAACACACTCTAGTAGAGAAA
1 AAAACACACTATAGTAGAGAAA
* *
332 AAAATACACTATTGTAGAGAAA
1 AAAACACACTATAGTAGAGAAA
354 TATGAAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.18
Consensus pattern (22 bp):
AAAACACACTATAGTAGAGAAA
Left flanking sequence: Indices 1 -- 309
TTTCTTCTTTTTTCTTCTTATACTCTAAGGGTGGAATTTCACCCCTCGAGTACTTTTTTTCTATC
TAAAGAGAAGAACGATGAGTGGTAATTCTCTCACTCACGTCGTGTCGGAAATGGCTGAGGATTTG
CCTCAAAAACAAAGAATAGTGGGATTGGTCGTCTGTTTGAAGCAAAAGCAAAAGGCGCGTAGCGT
TCTTTTGTTCGTAACATTAGTAGTTACTCACTGGGCTAAGATAAAGGCGCGGATTCCACTTCAAA
AAAGAAAACACACTATATACGAGAAAAACCAACCAAACAAAAGATCACC
Right flanking sequence: Indices 354 -- 853
TATGAAATGAAAAAGAAGACAAGAAAAAGGCGCGTTGCCTAGCAGAAAACGAGGATATTCTGTGC
ATTTTCGAGATACCTTCGCCTTGGGATGGCGCTTGAGCTCTGATCGGAGCGCTTGGAGTGGGAGG
AGAGAGAGGACGGAAAATTCCACCTTAAGAGCATGATTCTATACTGGGAAATTCGTCCAAGAAGT
TTCTGCTTTTGCGGAGGCCCCCTCATGGAGAGCCACTTAATCCACCGTTTTGTGTAGGAGTAGGT
CAGACATCTTAGGTAATTCTCTATGCATTGGTTCACTCCTCTCTCCTCTGTCCACGGACTGAATG
AGGAAAGGGCTGAAGTGAGCCTATTCGGTGATTAAGTAAGGAAGATAGGGGCCGCATCCTGCTAG
TCAAGAAAAAACTCTCCCTGCTACCAGCTCTCCCTATCTAGAAAGTATCGCTTCTTCCCCTTCTT
CTCCTTCTTCTTTGATTTGTAGGACAACCTTAACACATATATATA
Found at i:6843 original size:16 final size:16
Alignment explanation
Indices: 6822--6854 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6812 GAAGCGCGGC
6822 TTCTATGGTCTATTGG
1 TTCTATGGTCTATTGG
6838 TTCTATGGTCTATTGG
1 TTCTATGGTCTATTGG
6854 T
1 T
6855 AAGAAAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (16 bp):
TTCTATGGTCTATTGG
Left flanking sequence: Indices 6322 -- 6821
TTCTTCGGGAAATCCTTGGGTTCAATGCTATTCATGACCGCTCTCCATAGGGAGGGTAGAGGTCA
ATTAATATGAGTCAATGTGTACTGTATGGAGTGGGAAGGTTCTCCTAATCATAGTGTGTGAAGTA
TACAAAAGTCTAGTGAGAAAGAGTATAGGAAAGTGTATGTGTCATAGTTGTTTTGTGTTAGTAGC
ATTTTTTCTACTCAAGAGTAATGTGAGTGCAAGGGTCTAAAAGGGTGAATGTAGTGATCATTGTT
CGAGTAATACTAGAGTGTGTTTGGAAAGGTCTCAAGCTGTGGAAATGTCTAAGGCAAGGTATGGT
GTAATCATGCAGTAATCACTAAGGGTGGTTCAAATCAAGGGTGCTTTGCTTCCTATGGATAGGTC
AGGTATAAGAAGGACAAGTGAGTAGGCATTTCAACGAGTTGTTGACAAGACATTCACAGAGTGGC
GAGGCATAACGTGGTCGGAATAGCTAGTAGTTGTAGAAGCGCGGC
Right flanking sequence: Indices 6855 -- 7354
AAGAAAACCCGTCCCGCTCGGCTCCAGCTCCTCTTTCTTTGGACTGACATCAAAGAACTCCTATG
AAAGCATTCGGAACTTATGGATAGATGAAGGAATAAGCTCATTGTAAGAACTAACTTCTCAAAAA
AGTAAAGTGAGGCATTGGCGGTTAGTGAAAGGTGAAGGCGAAAGACCAACGACCGGCATGCTACA
GAATCTATAAATCCCACTGAACATCTGACCGATATTGGATTGCCTGACTCTTATGCCAACATATA
GACCGCACCTAACTGCATATGGTTAAAAGCATTGAACCAAGAGAACCTGTATGCCTCAATTCCAA
AACAAATGCAGCATTTATTTGAGTCAAGTCAAAGGAGAAGGAATATCTTCTCCTTGAATTTCTTG
GAAAAGCATACTCTTTTACGGCTGAAAACTGGAGGACTTACCAGGTTCATAGAGAATTATATGGA
GTGGGGCGGCTATTTGTAAATCGAAGCAGTCTTCGCCTTCTTTGC
Found at i:21914 original size:20 final size:20
Alignment explanation
Indices: 21891--21953 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
21881 CTGGGTTTCG
21891 TTTCAAAGATAGCTGTTTAT
1 TTTCAAAGATAGCTGTTTAT
** * **
21911 TTTCCCTAGGTAG--GTTTCG
1 TTT-CAAAGATAGCTGTTTAT
21930 TTTCAAAGATAGCTGTTTAT
1 TTTCAAAGATAGCTGTTTAT
21950 TTTC
1 TTTC
21954 CATTTGTGTA
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
18 6 0.20
19 7 0.23
20 11 0.37
21 6 0.20
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.46
Consensus pattern (20 bp):
TTTCAAAGATAGCTGTTTAT
Left flanking sequence: Indices 21391 -- 21890
GGTAGTACTGCAACATGCGGGTGTGGAAGGAAATTAGAGGACAGGTCGGGGGCATACCAGCCGGT
TTCGGGCAGTATCGACCCTGGCCTGGAATTGGTGAACTTAAGGCCTATACCAGAAAGAAAACCAG
GCACATGGCTCGAAGAGATGAAAGATTTGGGCAGTGAAGTATGATTGAAGAGTTTCACTTGGAAG
CAAGATCTTAGACATTGATGTCACTGCCGGATGAAGATAGATGCTCGCAAGGTTTGAGCAAGAAA
CAACTAGAAGTCAATTGAGAGTATCTAGTTCGAGTTTGTGTGTGTTTGATCAGAAAGTAGGTTAT
GCTTAACACATGCAAGTCGAAGTTGTCCAGCACATCTGATCAATGCGACTATATCCGTAGTAAGG
TTCGGCATTGGTGGTTGTACACGGTGTTGTTCTGAGTTCTGGGCTTGATCCCTGTGTCAGAATGA
GTTAAGTGACCTCTACCAAGACCGAACAGCAAATTCTGGGTTTCG
Right flanking sequence: Indices 21954 -- 22453
CATTTGTGTAAGTGCGGGTTCAATTCTACGGCACATTTCTAGTGGTATTATTATCTGTTCGAAAG
AATGGATCTCTTTGTCCTTCAGGGCTATGAAGACTGGTTCCTGTCTAAGAGAAACAAAATGAAAT
GATTGCACAGTCCCTACCTCCTAATAAGTAAGAGAATGCGCATCATAGCTCAACTGGTCATTGAG
TTTAGAGTTATTCTTCTTCTATAGAAATAGGTCAAAAGGCAAGTTGTGAGTTAAAGGGGAGTACG
GTCAGAAAGTAGTAAACCCCGTGTTTTTGTCCTACTTGTAAATTTCCCTCGTAGCACCCACCACC
AAATGATACAAAAGTAGTCCGCACCTATATGCAAAAGTAATACTTGGTTTTTTTCCCTCGTACGC
GGTCACGCTTGGATGAAAAAAGGAGTCCGCCCCTATGTGCAAAAGTACTACTTTCCAGGGTTTAG
AGCAATTTGGAACTAACCAGGCCCGAGTTACGACTGAAAAAGGCA
Found at i:35658 original size:25 final size:22
Alignment explanation
Indices: 35598--35660 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 22
35588 CTTGGCTAAC
*
35598 TCAACTACTATATGAGGATAAAG
1 TCAA-TACTATATGAGGAGAAAG
*
35621 TCAATACTCTATGAGGAGAAAG
1 TCAATACTATATGAGGAGAAAG
35643 TAAACAATACTATATGAG
1 T---CAATACTATATGAG
35661 AAATTCAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
22 17 0.50
23 4 0.12
25 13 0.38
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.25
Consensus pattern (22 bp):
TCAATACTATATGAGGAGAAAG
Left flanking sequence: Indices 35098 -- 35597
TGAAGCTGGATCAGGTCAAAGCCTAAGGAGATAGACCAGCAGCCAGTAATGGGGCTATTCCTGCG
AGGTCGTACACGTTGATGAAAGAACTTGAGCTTTTCATATGCCCCAGATGACAAAAGCAAAGGAA
AGTGCTTGCTAATTATTAGCATACCTTTTCTTCCAATACTCATTGGATTTTATACTGCTCATAGG
CACTTAAACACAACTGTTCTAATAAGCAAGCAATTGAACGTAACTATTTGATTGACCCTACATTG
AATTCTGTCTTTTCCTATTAGAAAGTTGTACTCTATGATATAATGATATAGAAAGTTATCCCATA
TGATATAGAAAGAGGATAGGCATCATCATTATTTTGATCTTCTTTTATTCTAAACAAAAAAACCA
TTCTTCTATATTCCTATATTGGTTAGATTCAAACTAGACATGTACTTGTCTTGCAACAGTTGACT
ATTAAGGACTGCAAAAGTGAAAGAAAAGAATGACACTTGGCTAAC
Right flanking sequence: Indices 35661 -- 36160
AAATTCAATACTCTAATATGAGAAGGGCTAAACTCCACTTCTTCTCTTACGACGGAAAGTGCCAA
CCAAAGAGAAGAGTCTCATTATGTCATGGAAGAGAACAGTCTCTCTCTTTATGTCAGTCAGCTCA
TATTTTCATATATGCTTCTCCTTTCTTTCGTAATAGCTTCATTTCAGGCTTCACACTCCTCTTTT
CATTCACACGGATCTTTTTTCTAAAGGAGAGGGTTTTCTAAAGGAGAGAGATGTAATAGTGTTAA
ACACCCCTAGAATTTCCTTCGATCTTTCAGTCTATAGCGCTTCTAGCCAGTCTTACTTCAGACTA
GATCTGACGCCAATAGTAGTTAGTTAACAGCAAAGCACCTTTAGTAGTTAGTTAAAAGCAAAACA
CCTTTAGTAGTTAGTACATTTGTAGCGTGTGCCTTTCCTATGAGTGTTCCTTTCTTTCCTTTTCC
TATGAGTGTTCCTTTCCTAATTCCTTTCCAGAATAAATAGAAAGA
Found at i:36039 original size:28 final size:28
Alignment explanation
Indices: 35999--36065 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
35989 CTGACGCCAA
* *
35999 TAGTAGTTAGTTAACAGCAAAGCACCTT
1 TAGTAGTTAGTTAAAAGCAAAACACCTT
36027 TAGTAGTTAGTTAAAAGCAAAACACCTT
1 TAGTAGTTAGTTAAAAGCAAAACACCTT
36055 TAGTAGTTAGT
1 TAGTAGTTAGT
36066 ACATTTGTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (28 bp):
TAGTAGTTAGTTAAAAGCAAAACACCTT
Left flanking sequence: Indices 35499 -- 35998
TCCTATATTGGTTAGATTCAAACTAGACATGTACTTGTCTTGCAACAGTTGACTATTAAGGACTG
CAAAAGTGAAAGAAAAGAATGACACTTGGCTAACTCAACTACTATATGAGGATAAAGTCAATACT
CTATGAGGAGAAAGTAAACAATACTATATGAGAAATTCAATACTCTAATATGAGAAGGGCTAAAC
TCCACTTCTTCTCTTACGACGGAAAGTGCCAACCAAAGAGAAGAGTCTCATTATGTCATGGAAGA
GAACAGTCTCTCTCTTTATGTCAGTCAGCTCATATTTTCATATATGCTTCTCCTTTCTTTCGTAA
TAGCTTCATTTCAGGCTTCACACTCCTCTTTTCATTCACACGGATCTTTTTTCTAAAGGAGAGGG
TTTTCTAAAGGAGAGAGATGTAATAGTGTTAAACACCCCTAGAATTTCCTTCGATCTTTCAGTCT
ATAGCGCTTCTAGCCAGTCTTACTTCAGACTAGATCTGACGCCAA
Right flanking sequence: Indices 36066 -- 36565
ACATTTGTAGCGTGTGCCTTTCCTATGAGTGTTCCTTTCTTTCCTTTTCCTATGAGTGTTCCTTT
CCTAATTCCTTTCCAGAATAAATAGAAAGAAACTGATTTTCTATAAGAAGAAGAAGTCAAGTGAT
TTCATATTGACCCGGATTCGATCTATGTGTACCGCCCAGACAAAGAAGATTACCTGAGTCAAGTT
GCATTTACAGTCCAGAAGTCAAAAAACAGGGTATCTCCTCCCAAGCTTGCTTTATAGTTATCTCT
TCCCAAGCTTGCTTTATAGTTATCTTATATGAGTGGCATATCTAAGCAGTGACGCAGATAGCTAG
TAGAGCCGCTAATGGACCTATTTATTGTTCATAAGCCTACTGCCTTGTTAGCTTCCCCCTCTTTG
TATTTCTCTTAGTCCTTTCATAAAAATCAGTCCATTTATTCAGTATTAAGCTTTTCTGTCTGTAG
ATTCACTCTTTCTTTCTACGAAGGATGGTCAAAACACTTTTTTGA
Found at i:36330 original size:27 final size:27
Alignment explanation
Indices: 36292--36350 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
36282 AAAAACAGGG
36292 TATCTCCTCCCAAGCTTGCTTTATAGT
1 TATCTCCTCCCAAGCTTGCTTTATAGT
*
36319 TATCTCTTCCCAAGCTTGCTTTATAGT
1 TATCTCCTCCCAAGCTTGCTTTATAGT
36346 TATCT
1 TATCT
36351 TATATGAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.19, C:0.27, G:0.10, T:0.44
Consensus pattern (27 bp):
TATCTCCTCCCAAGCTTGCTTTATAGT
Left flanking sequence: Indices 35792 -- 36291
ATTTTCATATATGCTTCTCCTTTCTTTCGTAATAGCTTCATTTCAGGCTTCACACTCCTCTTTTC
ATTCACACGGATCTTTTTTCTAAAGGAGAGGGTTTTCTAAAGGAGAGAGATGTAATAGTGTTAAA
CACCCCTAGAATTTCCTTCGATCTTTCAGTCTATAGCGCTTCTAGCCAGTCTTACTTCAGACTAG
ATCTGACGCCAATAGTAGTTAGTTAACAGCAAAGCACCTTTAGTAGTTAGTTAAAAGCAAAACAC
CTTTAGTAGTTAGTACATTTGTAGCGTGTGCCTTTCCTATGAGTGTTCCTTTCTTTCCTTTTCCT
ATGAGTGTTCCTTTCCTAATTCCTTTCCAGAATAAATAGAAAGAAACTGATTTTCTATAAGAAGA
AGAAGTCAAGTGATTTCATATTGACCCGGATTCGATCTATGTGTACCGCCCAGACAAAGAAGATT
ACCTGAGTCAAGTTGCATTTACAGTCCAGAAGTCAAAAAACAGGG
Right flanking sequence: Indices 36351 -- 36850
TATATGAGTGGCATATCTAAGCAGTGACGCAGATAGCTAGTAGAGCCGCTAATGGACCTATTTAT
TGTTCATAAGCCTACTGCCTTGTTAGCTTCCCCCTCTTTGTATTTCTCTTAGTCCTTTCATAAAA
ATCAGTCCATTTATTCAGTATTAAGCTTTTCTGTCTGTAGATTCACTCTTTCTTTCTACGAAGGA
TGGTCAAAACACTTTTTTGATAGTGCAAAGCTAACGCTCCTTCTTTACTCAAGCTTAAAAAGAAG
CCAGACCTAGTTGATTTACCTCGCCTATTAAGCAGAAAGCCGCAGAATGCCTATTTCTTACTTCT
TTATCACCTTCCTTGGCTACTTCTTCTTTCCCTTACTTGTCAGCATACTGAAACACTCTCTCTTT
TGCTTTGATTAACTGATCTCTGAGCTGTTGTATTGCTCTATACCTCTCCCCTCAAAAACCCTCGT
GTCGTATGGATTTCTCCCCACTAAATAGGTGTCAGTACTTTGGAG
Found at i:36709 original size:24 final size:24
Alignment explanation
Indices: 36669--36714 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
36659 GCCTATTTCT
*
36669 TACTTCTTTATCACCTTCCTTGGC
1 TACTTCTTTATCACCTTACTTGGC
*
36693 TACTTCTTCTTTC-CCTTACTTG
1 TACTTCTT-TATCACCTTACTTG
36715 TCAGCATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.11, C:0.33, G:0.07, T:0.50
Consensus pattern (24 bp):
TACTTCTTTATCACCTTACTTGGC
Left flanking sequence: Indices 36169 -- 36668
TTCTATAAGAAGAAGAAGTCAAGTGATTTCATATTGACCCGGATTCGATCTATGTGTACCGCCCA
GACAAAGAAGATTACCTGAGTCAAGTTGCATTTACAGTCCAGAAGTCAAAAAACAGGGTATCTCC
TCCCAAGCTTGCTTTATAGTTATCTCTTCCCAAGCTTGCTTTATAGTTATCTTATATGAGTGGCA
TATCTAAGCAGTGACGCAGATAGCTAGTAGAGCCGCTAATGGACCTATTTATTGTTCATAAGCCT
ACTGCCTTGTTAGCTTCCCCCTCTTTGTATTTCTCTTAGTCCTTTCATAAAAATCAGTCCATTTA
TTCAGTATTAAGCTTTTCTGTCTGTAGATTCACTCTTTCTTTCTACGAAGGATGGTCAAAACACT
TTTTTGATAGTGCAAAGCTAACGCTCCTTCTTTACTCAAGCTTAAAAAGAAGCCAGACCTAGTTG
ATTTACCTCGCCTATTAAGCAGAAAGCCGCAGAATGCCTATTTCT
Right flanking sequence: Indices 36715 -- 37214
TCAGCATACTGAAACACTCTCTCTTTTGCTTTGATTAACTGATCTCTGAGCTGTTGTATTGCTCT
ATACCTCTCCCCTCAAAAACCCTCGTGTCGTATGGATTTCTCCCCACTAAATAGGTGTCAGTACT
TTGGAGGTCTGACTCCATTGAATCATATGAAGAGATTTTGGATCTAAATGTCTGCCCAGCCACAA
CAATCTTCTTTCAGCTGTAATAATCATGTTAGCAATTCCTTGACCAATAATGCCGCAGACAAAGC
CAACCGAACCCCCAACGAGAAGATCGGCGGGGAGTGTGCCTCTACACAACGCTGGGCCAGATGAG
TGGACACCGAAATATACATAGTAGGCAAAAGCGCTCACATGCCAGGGCATTACAGCAGAATAAGA
ACCTAACAACTGGATCAGAGCCTAGTGAACTCCTAAAATGGAGACTACGGCATCTCCTTCTGAGG
AGCTACTGCCTTCAATTCATCCCCACACTTTGCATAGGCCCGCAA
Found at i:40964 original size:14 final size:14
Alignment explanation
Indices: 40945--40972 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
40935 CAGCTACTAC
40945 TATCTATATTCCAT
1 TATCTATATTCCAT
40959 TATCTATATTCCAT
1 TATCTATATTCCAT
40973 GCCCAGCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
TATCTATATTCCAT
Left flanking sequence: Indices 40445 -- 40944
CGCGGTAAAAAGAATTCTTAGATATCTGAAGGGTATAGCACACTACATGCCCGATTGGGGAGGTG
ATGCAGATGAACGAACGCAAGTCGACATTAGGATACGCTGAGTCGCGGTGCTATTTCTTGGCGTA
GCAAGAAGAAGTCTTGTATAGCGCTTTCCACTATGGGAGTCGAGTATCTAGCATGTTCAGTAGCT
CTTCAAGAGGGCGTTTTTTGAAGTCGATTCCTAGAGCACTTGAAGGCTTTCACAATTCCAATGAG
TTCTTTGACAATTTTGTTTTCTAATATGGCTGCTTTAGCATACTCAAACCAAGTGTCTGTAAAAA
CCAAACACACTCTCTCCTCACGTATCACCCTCGGTTTCTGCCACCTACTTTTTCAATTCTACTTT
TTCGTACTTTTATTTTATTCTGCCTACTCCCTTTAGGCCCGTGTAAAGCTACCGCTTTGCGCCAG
TGAGTAACTACGCCATGTGTAGAACAAAGAAGGCCCAGCTACTAC
Right flanking sequence: Indices 40973 -- 41472
GCCCAGCCGATGATCGAGCTCAACCAGTTCTTGCCTCGGTGGAACCTAGCTGATCAAGTACTTCC
TTGTGACTTATCCTGCTGAAAGGACTGCGTACCCTGCCTTTCCAGTAAATGACACTTTTGACATT
ACACTTCTTACTGCTTTTGTCAAATATGTTCATGCTAGTCCTGTTCATGGATCTACACCTCGCTC
GAGACAACTTATCCAGTTTCTCTTCTAGTCTTAGCCGAAGCTTCCTACTTCTTAGCCGAAACTCT
CATATACCTATTCGCTCGCTTACTGGTATTGGCTTTGGCAAGTACGTATTGAGACTTGCTTCTTC
CCTATTTTTGATTTCAATTTATTCATTTCTATACTTCTTTGTAAACTAATCAAATACATTCTATT
ACACATCCCTATCTCACCCTTGCCGAGTAAACTAAACCTGCGCTTGGCGTTCTAGGAAATACCTA
TCCAACTTATGGCTATTACGAGGCGCGTAGCGAGAACAAGCAAGA
Found at i:62694 original size:21 final size:20
Alignment explanation
Indices: 62652--62694 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
62642 ACCCTTGGGA
* *
62652 AGAAGAGGAGGATGTTGAGG
1 AGAAGAGGAGGAAGTGGAGG
*
62672 AGAACGAGGAGGAAGTGGTGG
1 AGAA-GAGGAGGAAGTGGAGG
62693 AG
1 AG
62695 GTAAGTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.35, C:0.02, G:0.51, T:0.12
Consensus pattern (20 bp):
AGAAGAGGAGGAAGTGGAGG
Left flanking sequence: Indices 62152 -- 62651
CAGCTAATGCAAGAAAAATACTGGTCAAAAACGTCATTATCACAAGCGGATGCAGATCCAGCCAC
AGGCCACATCGGAAGGAATTTTGGAAGATTAACAATCCGCAGTAGAATGTTACCAATATTGATCT
TAAAACAGAAATGTTGAATTAGAAACGTAAGGACTCGAGTTACTCTGAGCTATCCTGACGGGCAA
GCCAGCTGTGAAATATGCGACGTGGAGGGCAACAAGAAGGTGTTGGGGAAGAAGAAAATCCCGCA
AAATCCGTGCCTTAATAATCTCAGAACTGATCTTCTCCATCATCAAATTTCACTCTCGAAGAAAC
CTGGCTCCTAGTTTTCAAATAGGCATAAAAGATACAACAACCCTACTAAACCTAATGCAGACACC
AACCCCAAAATCAATAACTTGTGTTACTCTTGTAAGGAGCCATGGGCCCCAGGGCATCAGTGTAG
AGAGAAGAAATTGAAACTAATGAATACCCAGAGATACCCTTGGGA
Right flanking sequence: Indices 62695 -- 63194
GTAAGTGAAAGAGTAGAGCAATTCCAACTGGAGGGTACGGCTGGGGATGAACCCCATATTTCACT
GAATGCATTATCGGGTTCTCCTGGAAATCTTACTTTGAAAAATATGGGTCAAATCAAAGGGAAAC
CAATCACTATCCTGCTGGATACAGGAAGCAACACTAGCTGAATCAATGCATCCTTAGCCAAGCAG
CTAAAGTGAAATGTTAACAAAAGAATGCCTTGAATCATAACAGTGGCTAATGGTCAGAAAATTTG
CAGTGAGGGTCAATGTACAGGAGTGAAATTAGAGGTTCAAAGTCATACCTTCCTGTGTTAATTGA
GGGTCATTGAGCTAGGGGCATACGATGTGGTGTTGGGCATGGATAGGTCGAGAAAGATAGGTCAG
TCAATATTAGTCATTGGGTGTGCAAAAGACAATGAAAAAAGAACATGACAAGAGCCCTCGCGCCC
ACTCTCTTTTCTACATTCCCCACTAGCTAACTATTTTGTACTAGC
Found at i:63286 original size:22 final size:22
Alignment explanation
Indices: 63258--63300 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
63248 TGACGCATAT
*
63258 ACTTAAGTTTCCTATGGTAGAA
1 ACTTAAGCTTCCTATGGTAGAA
63280 ACTTAAGCTTCCTATGGTAGA
1 ACTTAAGCTTCCTATGGTAGA
63301 TGCCCCAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (22 bp):
ACTTAAGCTTCCTATGGTAGAA
Left flanking sequence: Indices 62758 -- 63257
CTGAATGCATTATCGGGTTCTCCTGGAAATCTTACTTTGAAAAATATGGGTCAAATCAAAGGGAA
ACCAATCACTATCCTGCTGGATACAGGAAGCAACACTAGCTGAATCAATGCATCCTTAGCCAAGC
AGCTAAAGTGAAATGTTAACAAAAGAATGCCTTGAATCATAACAGTGGCTAATGGTCAGAAAATT
TGCAGTGAGGGTCAATGTACAGGAGTGAAATTAGAGGTTCAAAGTCATACCTTCCTGTGTTAATT
GAGGGTCATTGAGCTAGGGGCATACGATGTGGTGTTGGGCATGGATAGGTCGAGAAAGATAGGTC
AGTCAATATTAGTCATTGGGTGTGCAAAAGACAATGAAAAAAGAACATGACAAGAGCCCTCGCGC
CCACTCTCTTTTCTACATTCCCCACTAGCTAACTATTTTGTACTAGCGGGAATGGCCTCGGTGTA
ACGACCCACGCCTACTAAGGGTAAGGAGTGCCCCCTGACGCATAT
Right flanking sequence: Indices 63301 -- 63800
TGCCCCAGGCGAGTCATCTTCCTCAAAGGAAAGGAGTGACCCTCTTTTCTTCCCTTCTACTTAAT
ATTTTGAATCCAACTATCTCCCTTATAACGGAGTTGCAGTTCTTCTTGCCAACTAGGCACCAATT
CAGTAACAGCAGCAAATTCCTCTATTATCTCAACTGAATTCCCATTTTGCCCCTGTACGAATTCC
GACTGAGCCAAAAAAGGCCAACTCGAAAACGAATTCCACAACTTCGTTCCTCATGCCAACGTGTG
GACCACTCCCCCTGTCGCCGTGCCGGCCGAGTGAGTTGGTAGCGAAACTCGTCTGGCAAGTCTTA
CGCGGAGGAAGCAAGACAGTTATCGTTCACCGATTCACTAGGACAAGCGGTCCCTATTTCTACTT
ATTCCCCATAACTGAAGAAGACTCCTGCCTTCGTTCGCGGACACTAAAAATGCGCTGTAAAAGCA
AAGAAAAGTGGGAAGAGAAGAAGAATCGTGTAACAAGAGAACCAA
Found at i:70141 original size:24 final size:25
Alignment explanation
Indices: 70103--70155 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
70093 TTACTTGAAT
*
70103 GAAAGGCAGACTTAGGTAAATGAG-
1 GAAAGGCAGACTTAGGTAAAAGAGA
* *
70127 GAAAGGCGGAGTTAGGTAAAAGAGA
1 GAAAGGCAGACTTAGGTAAAAGAGA
70152 GAAA
1 GAAA
70156 CCATATCCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.45, C:0.06, G:0.36, T:0.13
Consensus pattern (25 bp):
GAAAGGCAGACTTAGGTAAAAGAGA
Left flanking sequence: Indices 69603 -- 70102
CTTGGCTTTACCTTTTTTTCAAAATATGTATGTGCGTAGTTCAAGTTTTCGACCCATTTACCAAG
GAATATTTTGGTTGCTTTTGGCAGATTGCTTACTACTAGGTTGGATCGGATGTCAACCTGTAGAG
GCACCTTTTGTGACTATTGGACAAATTTCTTCTGTAGTTTTCTTCTTGTTCTTTGCCCTAACGCC
AATTCTGGGCCGAGTTGGAAGAGTAATTCCAAATTTTTACACAGATGAAAGAGACTGATCACACC
TGATCAGTGAAAAATGAAATCAAAAAGAATTGACGAGTGAGTCTTACACCCAGAATTGACAAGCG
GCTTTCACGAATGATCGAGACAGAGTAAGGCGGCACGAGGCATCCCTTTTCTCTTAAGCAATTCC
CGTGGTACAAGGAAAGGATGAAAGTGATATCGGTAATATGAAAGTAGAAGGCCAGTCTGAAATAA
GCATGTCACCGAGTCTAGATGGTGTTACCAATTCCTTACTTGAAT
Right flanking sequence: Indices 70156 -- 70655
CCATATCCTTTGATCTTCTCTGTTCCTCCATCTGGTCAAGCTTCCTTTTTCCCAGATCTTTAGTC
TTTTTGCAGTCCCTTCCTTATCTCACTTGGCTCTACTCTCGCACTTTGGTTTAATACTTTACCAA
AAGAACCAACCGGGATTTCGAAAGAAAGCTGGGTCAGCGAGCAGCGTCACTAAACAAAGGAAGGG
AGCAATCCCCATTAGTTAACTTTTGTGGAGTAGAATGTAGCTTTCTCATGCAGATGGAAAAGAAA
AGGATGCATTGCGGGCTAGTTTTGTTAAGGAAGGAATCACCTAAGAAATCAGTGTTTTCAAGGCA
AATTCAATACGAGACGTCCAAGGCGCTAGAAAAAAGAAAAAAGTCAAAATGCTAACTCCATACCA
AACAGGAGTGTGCCAGCCCGGGATTCTTCTGAAGAAAGAAGGTTCGAAGTTGCGACCCCTCACAG
TAGTGCTACCCATAGAAAAGATCATGAAAGAGGCGATAAGAATGG
Found at i:72825 original size:21 final size:21
Alignment explanation
Indices: 72801--72860 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
72791 TTCAGATTTC
72801 AAACGTGTCGTCGACTTCTTA
1 AAACGTGTCGTCGACTTCTTA
72822 AAACGTGTCGTCGACTTCTTA
1 AAACGTGTCGTCGACTTCTTA
*
72843 AAACGTGTCGTCTACTTC
1 AAACGTGTCGTCGACTTC
72861 CAGGAAATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.33
Consensus pattern (21 bp):
AAACGTGTCGTCGACTTCTTA
Left flanking sequence: Indices 72301 -- 72800
TCGGTCCGCGGGCATCGCGATAAGTCCTTTGTCCTACTACAGGTGCTGCGACAACCTTTACCAAG
TCCGAACGATTGTCGACTACCAGATCCGCTGGGCCGCTATAAAAACCCTCGCCCACAAGCACAAA
TCTTCCGCGCGTCATATAATCCCAAAGTACCCCAAAGACTTAAATATAGTTAATAAAAAAGGGTG
TAAGACCCTTGCGGAGTTCCCAAACAGCATAGAGCTTGGGAAGCTCGGACCCGGTCAAGATTAAA
ACAACGACTTGGAAAAAAAACTCTCTCGGCGGTAGGCAAACAAAAACTAGGCAAAGGAATTCTCA
GAGTTCATTGAGTTAAGGGAGGACCATTCGTGGGGGGTTCGTGGAAGAGTGAGTTGGCTTTTTTT
GATTCCCGTACGCAATGTGGAAAAAAAGCTAGAGCTAGATAATTTGGTAAAAGATCCAGCCGAGA
AGACCAGGAAAAGAGAAGGCTAAAGAATGTCACCATTCAGATTTC
Right flanking sequence: Indices 72861 -- 73360
CAGGAAATGTTTGGAAAACCATGTTAGTCGTCTTAGCTATACTATTTGTCATATTGCTTTATATT
TTGGTCGGTCTAGTTCTCTGGCACTTCTGCCCGGACCCCGAGCTCCTCCTGGACGTCACGTCGGG
ACTCATCACTTTTATTCACCAGCTGGTATACCAACTGGGAGAATTATGGAATGGGTCTCCGCAGG
GTAGAGTGCCACTGCCTTTAGGCGGCCTGGCCCAAGAGACAGCCCCGCCCACGGGCGGGGGCCGT
GGCAATAGTAACGCGCCGCTGCTGATGATGCTTCAGCCCGGCGGCGCGGACGGGGCGAACCAACT
ACCAGATCTCAACGCCCCAGCCCCCGAGGTGGTCGCCTTAGAGGAGCATAGGGAAACGACCATCA
ACGAAATAAAGAAGCGGTTTGCCTACCTTTGGGGTGCAGACCTCCCGGCGGTGAAAGACCAGATT
TTCCCGCTTTGGCATGTGATGGGAGGGGGCGGGTTCGTAAAAGGG
Found at i:76261 original size:20 final size:20
Alignment explanation
Indices: 76236--76275 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76226 TCCGTCCTAT
76236 CTATTCTTTCTCTTCTCTTC
1 CTATTCTTTCTCTTCTCTTC
76256 CTATTCTTTCTCTTCTCTTC
1 CTATTCTTTCTCTTCTCTTC
76276 GGGAAAGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.35, G:0.00, T:0.60
Consensus pattern (20 bp):
CTATTCTTTCTCTTCTCTTC
Left flanking sequence: Indices 75736 -- 76235
GCTTGAGTGATAAGTTTATTCGAGCGAGGGGAGAACCCTTTGAAAGAAAACTGGACCTGGGAATG
TAGCGTAGTAGGAGATGAGCCCGCCCCTAACTATATGAGGATATTACGCGCGGAAAAAGGATACT
CCACTCTAGGTAATATTCTTTCTTTCCTTAAAGGTTTCGGGCCTCCGCATAAACAGGACCGTAGC
ATGCATAAACAGGAAATGATAAAGCAATCTATCTGGTCAACAGTACATCCAGCTATTCACGGTGC
TCAATGCGCCGCAGTAAGACAAGCCTCTTTCTTATTAAATGAAGTAGTAAAATGTGCCAGTGTTC
ATATCAAATATGAGTCCAATATGCGTCCCACCACTTAACTTAAGAAAGAGTAGCTAGCAAGGCAA
AATCAACAACTCAAGAAAGAAAGTAGTTGTGGTATTTTCGTGTTTAGAATACGCACAGGTGAAAA
TTTCCTTTCCTATGATCCAATTCCAAAGTGCCAGGTCCGTCCTAT
Right flanking sequence: Indices 76276 -- 76775
GGGAAAGCGAAAGAAGGAAAGCAATTTCATAAGTGAAGGCGTCCGCAGTGTTCTGCTTTTTATGG
TTAGGCTCTGAAAAGAGGTAGATGGGTCTGTCTTGCTAGATGAACTTAATCTTGCTCCTCCATCC
GTCTTACTTGCCGTCGTCTTATAGAGTTAATGCTCATTGTTACTTCAATGCATTCTTTGGGGCGG
AGAAGTTAGTTCTGCTTTTTAGCATTATCTGTAGCATTGTGCTTTTGTTTTGTAAATAGTGAGGC
TATGAACTCAATCGTGGCCGGAGGTGGTATAAAGATAAATGTCAAAGAAGGGTTAGCTAAAAGAC
CTTGTCTCAGGGGCCGGCCTACCGTCCTTTCTTTCCCTATAATGTCTCTCAGTTTCTCCTGTCTT
CTATACTTCTTGCTAAAACCACATTTGAACAACGGTCTCTTCCAATTCCCAGTTCACTTTGTCTT
CGGGCTTTCATTCCTCAACTTCTTCATCAAGAAGTATGAGAAAGA
Found at i:83682 original size:24 final size:24
Alignment explanation
Indices: 83653--83701 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
83643 GATCAAAAAG
83653 AGTAAAATCGCATATTCTATAAGT
1 AGTAAAATCGCATATTCTATAAGT
83677 AGTAAAATCGCATATTCTATAAGT
1 AGTAAAATCGCATATTCTATAAGT
83701 A
1 A
83702 AATAAATAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (24 bp):
AGTAAAATCGCATATTCTATAAGT
Left flanking sequence: Indices 83153 -- 83652
CCGTGGGTATGGTGTTGCATTTCCAGCTATTTGATTCGTAGGATCGGACTTCAGTGTTCCCGGGC
ATCTCTTGCTTATAAAACATGCGTGTGCCTCTCCATTCACTGTTTGTGCTATGCTGTTGCTTATT
TCTTCAGAGCTGCAATTCCCTTCTCTGGAGCCTTCATCCCATTTACCTGAGATGCCATTCAGACC
ATCAAGTTGCTCCTCTTTGAACTTGCGTTATAGTTCGTCTAGATTACTGGAGTGGTGTCGGGCCA
GCGCCTTTTGTATTCCTTCAATTGACTTACCTCTTCCTTATAGGATGGTAATGAATCCTGAACTT
CACTCTGCTTTTATAGGCTCGTGTACACTGGACTCGCTACTTGATTAAAGCTTTCTCCTAACTCG
TGGGTATATACCTACTAGATTCACATTAAGTAAGAAACTGCATTTCAGTCTAGAGGAATCGCAAG
GGCCAAGATCATAGATGAGGGGGGTGTAAGGATCCGATCAAAAAG
Right flanking sequence: Indices 83702 -- 84201
AATAAATAAGTAAGTAAACTATAAGTGGACCTCTTCCTGCGGTCGTACTTCCTGTTGGCCTTGGA
AGCCTAAGGAAATACTACACCACAACTATCTATAAAAAACGAACAAAACCAAAAGGGGTACCCCC
CGGCCTATCCACGCTTTGTCTTTTTCCACTTTCTTCTTGTATTCCTGGCAGAGCACAACATATCC
TTATGATCCAGTTCATATGAACGGTGTGGTGTGCTATTCAGTGCTATGCATGGTGCATTGGTAAC
CGGAAAAAGCACTGACAAACAATCTGCTAATGAGGCCGGAGTCAGACAAAAGTCAAATCGTAGCT
GCTCATACTTATTTTTGAGTAAAGCTTCGTTAGGAAAAAAATACGCTGTTTCTTCCTTTTTGCAC
AAACATACGATGGTCGTACGAGGTAAATTGAAAAGTAGGACAAAAACACGGGCTTTCCTACTTGA
CTGATCATCCACACAAACAATTAGATAGCATCCCGCATTCATATC
Found at i:83708 original size:24 final size:24
Alignment explanation
Indices: 83655--83707 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
83645 TCAAAAAGAG
*
83655 TAAAATCGCATATTCTATAAGTAG
1 TAAAATCGCATATTCTATAAGTAA
83679 TAAAATCGCATATTCTATAAGTAAA
1 TAAAATCGCATATTCTATAAGT-AA
83704 TAAA
1 TAAA
83708 TAAGTAAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.32
Consensus pattern (24 bp):
TAAAATCGCATATTCTATAAGTAA
Left flanking sequence: Indices 83155 -- 83654
GTGGGTATGGTGTTGCATTTCCAGCTATTTGATTCGTAGGATCGGACTTCAGTGTTCCCGGGCAT
CTCTTGCTTATAAAACATGCGTGTGCCTCTCCATTCACTGTTTGTGCTATGCTGTTGCTTATTTC
TTCAGAGCTGCAATTCCCTTCTCTGGAGCCTTCATCCCATTTACCTGAGATGCCATTCAGACCAT
CAAGTTGCTCCTCTTTGAACTTGCGTTATAGTTCGTCTAGATTACTGGAGTGGTGTCGGGCCAGC
GCCTTTTGTATTCCTTCAATTGACTTACCTCTTCCTTATAGGATGGTAATGAATCCTGAACTTCA
CTCTGCTTTTATAGGCTCGTGTACACTGGACTCGCTACTTGATTAAAGCTTTCTCCTAACTCGTG
GGTATATACCTACTAGATTCACATTAAGTAAGAAACTGCATTTCAGTCTAGAGGAATCGCAAGGG
CCAAGATCATAGATGAGGGGGGTGTAAGGATCCGATCAAAAAGAG
Right flanking sequence: Indices 83708 -- 84207
TAAGTAAGTAAACTATAAGTGGACCTCTTCCTGCGGTCGTACTTCCTGTTGGCCTTGGAAGCCTA
AGGAAATACTACACCACAACTATCTATAAAAAACGAACAAAACCAAAAGGGGTACCCCCCGGCCT
ATCCACGCTTTGTCTTTTTCCACTTTCTTCTTGTATTCCTGGCAGAGCACAACATATCCTTATGA
TCCAGTTCATATGAACGGTGTGGTGTGCTATTCAGTGCTATGCATGGTGCATTGGTAACCGGAAA
AAGCACTGACAAACAATCTGCTAATGAGGCCGGAGTCAGACAAAAGTCAAATCGTAGCTGCTCAT
ACTTATTTTTGAGTAAAGCTTCGTTAGGAAAAAAATACGCTGTTTCTTCCTTTTTGCACAAACAT
ACGATGGTCGTACGAGGTAAATTGAAAAGTAGGACAAAAACACGGGCTTTCCTACTTGACTGATC
ATCCACACAAACAATTAGATAGCATCCCGCATTCATATCCGCTAT
Found at i:93693 original size:22 final size:22
Alignment explanation
Indices: 93665--93708 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
93655 GTTTTGATTT
93665 TTATTCAATGAGCAGGAGCAGG
1 TTATTCAATGAGCAGGAGCAGG
*
93687 TTATTCAATGAGTAGGAGCAGG
1 TTATTCAATGAGCAGGAGCAGG
93709 AGGGGCTACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.25
Consensus pattern (22 bp):
TTATTCAATGAGCAGGAGCAGG
Left flanking sequence: Indices 93165 -- 93664
AAGAAAGGAGATAATAAAGAAATTCTGGCTATCAGATGTGGCCTTTTGGGGGATCTTTGCTTTTT
CATTAGTTGCATCATTGAGAATAGGGCACTTATCTATTTCAATATTTACATAATAGGTAGGTAAT
AGAAACTTCACTCATAATAGGTAGGTAATCGAGACTCTCCTTTATACAGGGCCGACCACCTAGCT
AGCTAGACGAGTGGATTCAGTCATGGAGTTGGGAATTCAAGGAAGGGTCAGTCCTTTTTGCGTGG
CCCGAGATAAATAAGTCTGTGGCCTGCCTTTCTTCATATTGAGACGTACGATAATGTTGAACTGG
GCATAGATTATAGTTTGAAAACGGGCATAGACTCTGGGTTGAAAACGAATCTTCCGGCAATATGC
TACTATACCTGTGGAAGCCCATATGGAACTACTATGTGGCAGCACCCACCTAACCTAAACAAGTA
AGTACTTTCGGGAGCATACTCTCCTTTGTGCAAAGGTTTTGATTT
Right flanking sequence: Indices 93709 -- 94208
AGGGGCTACCCTTCTATATGGATTCCACCATAGACCAAAGGCGCGAAGCGGGTAAAATAGATCAT
CTACCAAGAGTTTATTTAGAATAAGATCGACACCCCCATGAGTTAATAGTTGGCAGATTTAACAC
AAAGAAATAAGACTACTCCGAATTTCTCACCCGCAGATTTCAGACCAATAATACTACTAAGTAAG
TTCTCTTTATGAAGATATGTATGACCGGAATAGGAGTGAGTAAGCAAGCGAATCAAATAAATAAG
TGATTGAGCTTGAGAACGACGAGTCATCTGCTATGACCGAAACAGGAGTCACCAGGGGAATCCAC
TATTTAGCTTGAGAACTACGCTCCGCGCCTCATAAAAAGAGACCCAACTGCGCAATGAACGAAGG
GAAGGCCAAGCAAAAGAAAGCAGTATGGGTAAAGCAAGACGAGACACTGACAAATCTTCCTATCG
AGGAGGAGCAGGTTAGTTATTACGTGGAAGTGCGTGCTAGTGGAA
Found at i:104044 original size:13 final size:14
Alignment explanation
Indices: 104013--104050 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
104003 CGGTATGAGA
*
104013 GAAGAGAAAGAAGT
1 GAAGGGAAAGAAGT
104027 GAAGGGAAAGAA-T
1 GAAGGGAAAGAAGT
*
104040 GAAGGGGAAGA
1 GAAGGGAAAGA
104051 GTTAATGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.53, C:0.00, G:0.42, T:0.05
Consensus pattern (14 bp):
GAAGGGAAAGAAGT
Left flanking sequence: Indices 103513 -- 104012
GGATATTGATTCGGACCAAATACGTTGTGTAAGGGAAAGGGAGCACTGGATCTCGGTACAGGGAT
AAGGATAAACCACTATCCGCGGCATCATCCATGAAATCTCTAATAAGTCTAAAGGCACTAACAGT
AGATGGAAGTTGTACCAGTACCTGCGAGGGAGACCAACGGAAACACTGAATTTCCGTTTGTGGAC
TATTAGAGATTTCTTGTATGAAATTTGGAATTTGTTCGACTGACCATGCCATGTGTGGGCTAGTC
GTAGAAAAAAGTATGGTTTGGTTTAGGTCTGCTTGAACTGAATTTGTCAAGTCATACTCATCAAA
GGAACCACGGGTGCGATGGATCTGGTTGAGAAGGAACGGATATGGGGGAATAGGGCCTTGTTCCA
TTTTTTCGGGAGATTTTGAGAGAAAAGTTAGGCAAGATTGGACACAGTGAGAAAGATAAGTAAAA
AAAAACTAAGAAAAAAGGAGAAGATCCAGTAGAGACGGTATGAGA
Right flanking sequence: Indices 104051 -- 104550
GTTAATGTGAGAGGCGACGGGAATTGGTAAAAGGAGGGTAGAATCTAAGAAATTAACAGTTTAGT
AAGAGTTTGGTAGGAGGTTTTTGAGAGAACAGACGGAAGAGTTAGAATTCGCCATGATTATCGCC
CAAAATCGCCTGAAAAGTCGCCTTTAACCAAGCGCTCCTTTTAACCCACCAATCTGTTTCGTTGT
CGAATTGGATTACATTGAGGTTAACATCATTTAATTCCCTTTTGTTAGAAAAATAAAGCCTTCTG
TTTTGGTTGATAAAACAACCTAGCACAAGGCCAGTCGGATCAGACAATAACAGAAGCGCCATTAC
ACCAGTACCATGTATCTATCTCTTCATAGACAAAGGGATCAAACAAACCAAACAAAACCCAACAA
GAAAAAAAAGTAGCACAAAATTGAAAAGAAGAAAAAGGAAATTGGAGGGAGACAATTCAACCTAG
ATGAGCTTGACGCGACAGAGAAAGCGAACGGTGAAGAGAGAGGCA
Found at i:111430 original size:13 final size:13
Alignment explanation
Indices: 111412--111439 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
111402 CAAAGAATTC
111412 TTCATTTATCATA
1 TTCATTTATCATA
111425 TTCATTTATCATA
1 TTCATTTATCATA
111438 TT
1 TT
111440 AGATAGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (13 bp):
TTCATTTATCATA
Left flanking sequence: Indices 110912 -- 111411
TTCGTAAGTAGCCCGCTTCAAGCGATAGTAGAAAGGGCGGGCTTATTCTTATCTTTTATAGAAAA
AGGAAGTCATTCTCGTTTTCTAATCGAATCAAAAGTGAGTTAGTGATTGAAATCAGAGCAAATCA
ATCTAGAAAATCGTTGTGACAAAAAGCGGGATTGACCAATAGGAATCACTTAGCTTTTCCCTTCT
TTGAACTAGAACTTTACTTCCCTTATTTGCTGTTCTAACTCAATTACTTTTCCCGGGATCACTTC
TTCTCAGACTGCTTTGAACTGGGAACGATCTAGTCTTTTTCATTTGAATTACACTTCTCTTTTTC
TAGAAACTGTGTTTGCACTGCTTGCCCCTCCCTTGGTGTATCGGTATTTCACAAAAGCACTATCT
GAGAACTGTCCAACGGAGACTGCAACAAAGGAATTCCACTTCTTCCTTTCATCACTTATAACTGA
CTTGAGGTTTTTTTTTATGTGAATTTGTTAAAAAACAAAGAATTC
Right flanking sequence: Indices 111440 -- 111939
AGATAGATATTAAATATTAATGAAATAACTCGTGGCTATTTATTATCCTACTGGCTACTAACTAG
TAAGAAGAAGAAAGACGCTCTCGCTTTACTCAGATAATGAAAACTCATATCGTTCCATGCTATTA
ACAATTGTTTGTTCCAGCTCAGTTAGCTTCCTCTTATGTCTAAGAATAGTTTCTTTGGCGGATAT
CTTATCAGATTGAACTAGTCTACTCATTAATGTAGGGAATCGACGATATGCTATTAATGGATCAC
TAAACGATTCCACAGAGATAGATTCTATTTGCCACTAACCATGAATGCACTACAAGTCTTGTCAA
AAACAGGGGGTTTACTAAACAATAATGCCATGAATTTCTCATTGGCTTACCTCGAAAACAACGCG
GCAAAGATTCTTTGATGGTGGTGGTGAGTAGAGGAAGGTATACCGCGTAGACTCTCATCCAATGG
AACAAAGACAAAGTGGCACAGGAACTAACGATTTGATTGGCATTT
Found at i:117002 original size:24 final size:24
Alignment explanation
Indices: 116966--117013 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
116956 AAGATCTGCC
116966 CCTATGATGGATTTG-CTTTCCATA
1 CCTATGATGGA-TTGCCTTTCCATA
*
116990 CCTATGATTGATTGCCTTTCCATA
1 CCTATGATGGATTGCCTTTCCATA
117014 TAAAAAGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.42
Consensus pattern (24 bp):
CCTATGATGGATTGCCTTTCCATA
Left flanking sequence: Indices 116466 -- 116965
GGGTTGGTGAAGGAAAGGGGCTACTGCTGGAACTAAGATGAGTTAAGTAGTGCTTTATTTAATAA
ATAGGCAAGTAACGGATAGAAATACAGGCGTGGTATAATAAGCATCAGTTTGATTATATCTCTTT
GTATGCATAGGTGAGCAAGGACTAGTAACTAGGGATCGATCGGTCAACATGTCAAGGTGTGCTAT
AGTAGGGACCGGTTAAGTAAGAGTGGTGTATGCAAGGGTAATAGTAAACCAAAGTGGAGTCAAAG
AATAAAGAAGGGTAATACGCTGTATGTAAAAGTAAGTAAAGCGTTTTACCCTCCCGGCGGAATCT
TTCCCTTGTCTGCTGGATTTCCCTACCTAAATATTTTCCTTCTGGGTACCTGATATGTATTCTCG
TAGAAGAAGAAAAAAGAAAGTATTGGTATAGCTGAGTACTTGTCTGGATTTGAAATAGCAACGTA
AGCATCCGCCTTTTCCAATGGACTTACTAAGGGTAAAGATCTGCC
Right flanking sequence: Indices 117014 -- 117513
TAAAAAGAAGATGAACTCACGAATCGATCCACCTCTCCTCTTGCTCATATTAAACCAGATGGAAG
AAGATCGCAGACCGATTTCACCAACTTCCAAGATGGTGTAACTTAGTACTTGACTTGAATTTCGT
TAGTAATTTTCTTAACGAATTTGGGTTTTTTTGTTTGATTTCTCTATTCTATGGCTTTCATTGAC
TTCTGGATGTTCTGGCCACATGTTCATGAAACCCTAGGTTTGTAGTGATGGCTCGAAAGAGGAAA
TTTCCCACCCGCACCACGTAGGATAGACTCGGATATTTTTCGTGACGAAAGTAGTCCAAAACCCA
ACAAGCAACGGCTGCCTGCGCGAAAGCCGTTGCGCGTTAGCACGCTTATCCGTTTTCTTGCAACG
AGTAACTACTAATGTTACGAGTGAAAGGGGATACCTTGGATTTTCATAGAGATTAATGGACTGAG
GCTAGGAAGGACGGTAAGCCACGAAAGTAGGAGACCGACTAGTCT
Found at i:151492 original size:22 final size:22
Alignment explanation
Indices: 151462--151505 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
151452 AAAGATCACC
*
151462 AAAACACACTCTAGTAGAGAAA
1 AAAACACACTATAGTAGAGAAA
* *
151484 AAAATACACTATTGTAGAGAAA
1 AAAACACACTATAGTAGAGAAA
151506 TATGAAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.18
Consensus pattern (22 bp):
AAAACACACTATAGTAGAGAAA
Left flanking sequence: Indices 150962 -- 151461
ATATCTGACCGCACAAAACCTCCGTAGCCAATTTCCAAAATTGGACTCTGAAATCAGAGACTCCT
GCTTTTGGTACTAATCTTATTTCAAAGGATCCAGGAACTTCCATAACATTGGCGTAATTCTGTTT
TAGCAAGAGATCCTGACGTAATATATCTTCGTAATGAAAATGGAGTGGAAACATCATGGCCTTTC
TTCTTTTTTCTTCTTATACTCTAAGGGTGGAATTTCACCCCTCGAGTACTTTTTTTCTATCTAAA
GAGAAGAACGATGAGTGGTAATTCTCTCACTCACGTCGTGTCGGAAATGGCTGAGGATTTGCCTC
AAAAACAAAGAATAGTGGGATTGGTCGTCTGTTTGAAGCAAAAGCAAAAGGCGCGTAGCGTTCTT
TTGTTCGTAACATTAGTAGTTACTCACTGGGCTAAGATAAAGGCGCGGATTCCACTTCAAAAAAG
AAAACACACTATATACGAGAAAAACCAACCAAACAAAAGATCACC
Right flanking sequence: Indices 151506 -- 152005
TATGAAATGAAAAAGAAGACAAGAAAAAGGCGCGTTGCCTAGCAGAAAACGAGGATATTCTGTGC
ATTTTCGAGATACCTTCGCCTTGGGATGGCGCTTGAGCTCTGATCGGAGCGCTTGGAGTGGGAGG
AGAGAGAGGACGGAAAATTCCACCTTAAGAGCATGATTCTATACTGGGAAATTCGTCCAAGAAGT
TTCTGCTTTTGCGGAGGCCCCCTCATGGAGAGCCACTTAATCCACCGTTTTGTGTAGGAGTAGGT
CAGACATCTTAGGTAATTCTCTATGCATTGGTTCACTCCTCTCTCCTCTGTCCACGGACTGAATG
AGGAAAGGGCTGAAGTGAGCCTATTCGGTGATTAAGTAAGGAAGATAGGGGCCGCATCCTGCTAG
TCAAGAAAAAACTCTCCCTGCTACCAGCTCTCCCTATCTAGAAAGTATCGCTTCTTCCCCTTCTT
CTCCTTCTTCTTTGATTTGTAGGACAACCTTAACACATATATATA
Found at i:157995 original size:16 final size:16
Alignment explanation
Indices: 157974--158006 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
157964 GAAGCGCGGC
157974 TTCTATGGTCTATTGG
1 TTCTATGGTCTATTGG
157990 TTCTATGGTCTATTGG
1 TTCTATGGTCTATTGG
158006 T
1 T
158007 AAGAAAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (16 bp):
TTCTATGGTCTATTGG
Left flanking sequence: Indices 157474 -- 157973
TTCTTCGGGAAATCCTTGGGTTCAATGCTATTCATGACCGCTCTCCATAGGGAGGGTAGAGGTCA
ATTAATATGAGTCAATGTGTACTGTATGGAGTGGGAAGGTTCTCCTAATCATAGTGTGTGAAGTA
TACAAAAGTCTAGTGAGAAAGAGTATAGGAAAGTGTATGTGTCATAGTTGTTTTGTGTTAGTAGC
ATTTTTTCTACTCAAGAGTAATGTGAGTGCAAGGGTCTAAAAGGGTGAATGTAGTGATCATTGTT
CGAGTAATACTAGAGTGTGTTTGGAAAGGTCTCAAGCTGTGGAAATGTCTAAGGCAAGGTATGGT
GTAATCATGCAGTAATCACTAAGGGTGGTTCAAATCAAGGGTGCTTTGCTTCCTATGGATAGGTC
AGGTATAAGAAGGACAAGTGAGTAGGCATTTCAACGAGTTGTTGACAAGACATTCACAGAGTGGC
GAGGCATAACGTGGTCGGAATAGCTAGTAGTTGTAGAAGCGCGGC
Right flanking sequence: Indices 158007 -- 158506
AAGAAAACCCGTCCCGCTCGGCTCCAGCTCCTCTTTCTTTGGACTGACATCAAAGAACTCCTATG
AAAGCATTCGGAACTTATGGATAGATGAAGGAATAAGCTCATTGTAAGAACTAACTTCTCAAAAA
AGTAAAGTGAGGCATTGGCGGTTAGTGAAAGGTGAAGGCGAAAGACCAACGACCGGCATGCTACA
GAATCTATAAATCCCACTGAACATCTGACCGATATTGGATTGCCTGACTCTTATGCCAACATATA
GACCGCACCTAACTGCATATGGTTAAAAGCATTGAACCAAGAGAACCTGTATGCCTCAATTCCAA
AACAAATGCAGCATTTATTTGAGTCAAGTCAAAGGAGAAGGAATATCTTCTCCTTGAATTTCTTG
GAAAAGCATACTCTTTTACGGCTGAAAACTGGAGGACTTACCAGGTTCATAGAGAATTATATGGA
GTGGGGCGGCTATTTGTAAATCGAAGCAGTCTTCGCCTTCTTTGC
Found at i:174411 original size:16 final size:16
Alignment explanation
Indices: 174390--174424 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
174380 CTAGGAATAA
174390 TAGAATAGCGACTAGG
1 TAGAATAGCGACTAGG
*
174406 TAGAATAGCGACTCGG
1 TAGAATAGCGACTAGG
174422 TAG
1 TAG
174425 GCGACTAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.20
Consensus pattern (16 bp):
TAGAATAGCGACTAGG
Left flanking sequence: Indices 173890 -- 174389
CGCAGTAATTGTTTATGTCATTGCTTAAGGTAGGGCTTGCTTGTGAGAAGTGGTCCGATACTTAG
GAGTGTCTTTCTTTTAACAGGGTAATCTTACTTTTGTACCCCTACCGATCATAAACATGCAAATA
TCAGCTTAACATGGTTTTTTATCAATTTCAATTGTCGGACAACCTTGTCTCTTTTTAATGATGCT
ATTAGGAAGCTATAGGCTAGGGCATTGCATAGTATTAGGAAACATAAGACTAACATTGTGATTAG
TAGCAGTAGGCAAATAGGTCAAGTAGTACAGGAGTAGTTTAAGCAGGGAAATCCGACCTTACAGT
ACCTACTTTCGCTCCTGCCTTCGTGCTTTGCAGTTGGTAAAGTAGTGCTTGGGGCTTGGCATATT
TATGAGTTAATGTCTGGAGTTAGTTCATAAAGAAGTGACGTATTGGCCTTAGTAAGAGTCAGTAG
GGCAGGTCACTTTGGTCTAGGTGTATGGCTTGTGACTAGGAATAA
Right flanking sequence: Indices 174425 -- 174924
GCGACTAGGAATAATAGAATAGCAGGGACCTACTCCATATTAGTACACGGAACATAGGTCACTTC
GGTCGGTTAAAGCAGGTCACTCTCGACTAGATTAGATAGATTCTTCTTTGAATGGATTTCTTAGT
TGATGTCTACGCCGTGTTTTTCAACGAATGGAAAAACGTCTTTTCTTGGCGAGGAGACCGTAAGG
AGAAGTTTATCAACAAAACGGAGGGAGTTCCTAGAAGGCAGGCGCGCAGCGGTAGGAAGAACCAA
CAGGACCTTGTTGAATGGTATCAAAAGAGGGCTGAACGGCCATAAAGCAAGGTAAGTGGGTTGAT
TAACTACCACATGTGTTGTGGAGCTATAGAACCAGTCCCAAGACTGCAATAGGGGAAAGACCTTT
CAGTCTGGTGTATGGAACAGAGGCAGTAGTTCCAGAAGGAGTTTGAACTAAATCTCACTGAGTCA
ACCATCTTTTCTATGAAGTGATCGCTTACATACTACAAAACCTAA
Found at i:179074 original size:11 final size:12
Alignment explanation
Indices: 179058--179101 Score: 63
Period size: 13 Copynumber: 3.6 Consensus size: 12
179048 TTGGGCTAGC
179058 TACACT-TCCGT
1 TACACTCTCCGT
179069 TACACTCGTCCGT
1 TACACTC-TCCGT
179082 TACACTCATCCGT
1 TACACTC-TCCGT
179095 TACACTC
1 TACACTC
179102 GGTTGTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 6 0.20
13 24 0.80
ACGTcount: A:0.20, C:0.39, G:0.09, T:0.32
Consensus pattern (12 bp):
TACACTCTCCGT
Left flanking sequence: Indices 178558 -- 179057
GAGAGCATATGAAGAGAGAAGCAATTCTATTGAAAAGTCCTGAAATGCGCTTTTCACACCGTGAA
TCAGCCTAACCTACTTATTACTTTCATACTAATCACTCTGCCAATTCCTATGCTATACTTCAGAA
AGAAAGAGCCAATACGCTTCTTCCTTTTCTGCGAGTATGACCTTTTGCCCATACATAGGGGAATC
CTACTTTTGTTATGCTCACTTTCCTCGGCTTCTTTGTTACTAACATGCCGTAGTAATTCACTGGG
TGGATTAAATAAAGGAGGCTCGAAGAGATTAAATTGAATGGGCTAGTTTGGGCTAATACGTTTCC
TTGCTTCGTAACTAACTAATAAGCTCTCTCGTCATACTAAGCTCGGTTACTCTAACAAGCAGTTC
ACAAGCTTAATCCAGCACAAGCTTAATCCGTACTTTGATCGTATATAGTGTAGAATGAAGGTGAA
GTAAAGCTCTCTTTTACTATTACGTCACTTGCTCCTTGGGCTAGC
Right flanking sequence: Indices 179102 -- 179601
GGTTGTGTGTCGCATAGAAAGAAGTGAGCTAAGCTGAAGTTGATTCAGTAGATTAAGCCTGTGAC
TGGGGATTTCAATGATGTCACTTGCTCTCCTTTGACTAGAAAGCCGTTCATGCCGATCTGCTTTC
GGTAAGCTCTGTCTCTTTTACTGTAGCAAGGGTGCGGTGCCGTAGGTTTTATCTCCTGCCGTAGT
AGTAGTCCCTCTCTCGTCATACTAAACTAGTGGAAAAGGTACGTTCTGAAGAACAAGCAGCGTGA
GTTCCTTAAGCTCATCGGTTCGTAACAGACGAGTAACGTAGGCATGTATAGAGTGAAAAAGGTAG
TTCCTCACTGAGTTCAACAGAGTAGCACGCACTGGAAGGAATCGTTCCTCGCTCGGGTACGTATG
TTGTCTCAAGCCAGAATCTATGGTCCTGGTTCAAGTGGGCAGTATAGTTCTCTTTCGAATTGGCG
GCAAGCAATAGGCAATTTTCAAGTGAGTTGCTCTTTCTGTATATT
Found at i:179082 original size:13 final size:13
Alignment explanation
Indices: 179064--179102 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
179054 TAGCTACACT
179064 TCCGTTACACTCG
1 TCCGTTACACTCG
*
179077 TCCGTTACACTCA
1 TCCGTTACACTCG
179090 TCCGTTACACTCG
1 TCCGTTACACTCG
179103 GTTGTGTGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.18, C:0.38, G:0.13, T:0.31
Consensus pattern (13 bp):
TCCGTTACACTCG
Left flanking sequence: Indices 178564 -- 179063
ATATGAAGAGAGAAGCAATTCTATTGAAAAGTCCTGAAATGCGCTTTTCACACCGTGAATCAGCC
TAACCTACTTATTACTTTCATACTAATCACTCTGCCAATTCCTATGCTATACTTCAGAAAGAAAG
AGCCAATACGCTTCTTCCTTTTCTGCGAGTATGACCTTTTGCCCATACATAGGGGAATCCTACTT
TTGTTATGCTCACTTTCCTCGGCTTCTTTGTTACTAACATGCCGTAGTAATTCACTGGGTGGATT
AAATAAAGGAGGCTCGAAGAGATTAAATTGAATGGGCTAGTTTGGGCTAATACGTTTCCTTGCTT
CGTAACTAACTAATAAGCTCTCTCGTCATACTAAGCTCGGTTACTCTAACAAGCAGTTCACAAGC
TTAATCCAGCACAAGCTTAATCCGTACTTTGATCGTATATAGTGTAGAATGAAGGTGAAGTAAAG
CTCTCTTTTACTATTACGTCACTTGCTCCTTGGGCTAGCTACACT
Right flanking sequence: Indices 179103 -- 179602
GTTGTGTGTCGCATAGAAAGAAGTGAGCTAAGCTGAAGTTGATTCAGTAGATTAAGCCTGTGACT
GGGGATTTCAATGATGTCACTTGCTCTCCTTTGACTAGAAAGCCGTTCATGCCGATCTGCTTTCG
GTAAGCTCTGTCTCTTTTACTGTAGCAAGGGTGCGGTGCCGTAGGTTTTATCTCCTGCCGTAGTA
GTAGTCCCTCTCTCGTCATACTAAACTAGTGGAAAAGGTACGTTCTGAAGAACAAGCAGCGTGAG
TTCCTTAAGCTCATCGGTTCGTAACAGACGAGTAACGTAGGCATGTATAGAGTGAAAAAGGTAGT
TCCTCACTGAGTTCAACAGAGTAGCACGCACTGGAAGGAATCGTTCCTCGCTCGGGTACGTATGT
TGTCTCAAGCCAGAATCTATGGTCCTGGTTCAAGTGGGCAGTATAGTTCTCTTTCGAATTGGCGG
CAAGCAATAGGCAATTTTCAAGTGAGTTGCTCTTTCTGTATATTT
Found at i:180155 original size:12 final size:12
Alignment explanation
Indices: 180140--180171 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
180130 AAAGACAGAG
180140 AGGAAGAGGAAC
1 AGGAAGAGGAAC
*
180152 AGGAAGACGAAC
1 AGGAAGAGGAAC
180164 AGGAAGAG
1 AGGAAGAG
180172 CAAGAGCACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.09, G:0.41, T:0.00
Consensus pattern (12 bp):
AGGAAGAGGAAC
Left flanking sequence: Indices 179640 -- 180139
GGCGGCAGATCCAATTCAGAATCTCCGGCCTGCCTAAGGTCGTGGTAATTATCTGAAGGAGAGTA
AGTCAGTTCTGTCACTCTTCCTTTCTGCCGATAGAATAAATGGCTTGCTTGCTTGCTTTCCTAAG
AAGTGTTGCTGCAGCTTCCTTCCCGGACTGAGTAATAAATATGAGTTCGCGCGCGCATTGTCTGT
CTTTCAAGACCTAATAGTACGTCCGAATGACTAAGACGCCTAGTCCAGAGCGTGTTCTAAAATCC
TATCCAGCGGGCAATAGTCAACTGAGCTTTGACTTTGCCCATTGATCATCGAACCTTTTGATATT
CTCTTATATAGTGTATTTTTGGCATTTGCTAGCTGATCTTTGATTGAGGTCTGAAGCTCTTCTGC
TTGCTTCAATCTATATAGTCTAGTAGCAATAAGCAAATAAGGTTACTCGTCAGAGAGAGTACCAC
ACACTTACAGGCTCCTTATAGGATAAAAGACGCTCAAAGACAGAG
Right flanking sequence: Indices 180172 -- 180671
CAAGAGCACCACTCTCTTTGATTACCCTTATAGGATAAAAGACGCTCAAAGAGCAAGAGGACACA
CGCACAATAGACAACTCTTCTCATGGCAGCGGCACGCGGTAACAGGCTGGATGCATTGCCAGCGG
TCAAACTAGAAGCAATATATAAATCCCGGGGATCAACATGTAGCTTGCTGCGGATCTGACAAACT
AGTACGAAACTGTCGGTCGGAAATGTATGTCTATTGCTTCCTCAAGAGAGCTTTTTTCTCCATCT
TCCACTCGCCTCTTCTGTAACTAGTATCCCGTGCTGCCAAAAGAGCTGCTGAGTCTTCTTGCCTT
TGCTGCCTTGGATGCATTGACCTCTATCTTGAAAAAGGAATGAAAAGGGCACTCTTCTCTATCCT
CAATATTGTTTTTCTACTCGCATGCAGGAAAGAGGGACTTCCTTTTAGATGGTAATATAAGCAGA
ACTCCCCAGGAACAACTTCAGGGTATCAAGATCCTATATTGGGTC
Found at i:188160 original size:21 final size:21
Alignment explanation
Indices: 188136--188177 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
188126 AGGTTATTTC
188136 TAGCAGTAAGAGTTTAGGTAG
1 TAGCAGTAAGAGTTTAGGTAG
* *
188157 TAGCAGTAGGAGTTTATGTAG
1 TAGCAGTAAGAGTTTAGGTAG
188178 GAAATTCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.33, T:0.31
Consensus pattern (21 bp):
TAGCAGTAAGAGTTTAGGTAG
Left flanking sequence: Indices 187636 -- 188135
TATATAGAAATATGTGTTTTGTCAACCAATGTAATTGTTCTTCCTTCCTATGAATATGCATGAGT
TGTGACTAGGGCAAGGATGATAACTAAGCTAGAATATATCTCACCTCAAGAGAAAGAGCAAATGG
ATGTGACTTTATGGCAAGAAAGAGTAGTTATTAGAGGAGAATAGGGCAACGGACTAGCCTAGAGA
ATTTCTTGGTTTTGAAGGAAAGTAAACATAAGGAACCTAGGGCAGGGTTATTGTTTCTAATGAGC
AGTGACTTTCTGTCAAAGATAGATTTTAGTATCTTAACAAACAAAAGAAAAAAGGGGCTAAGTTA
CCCGGCATAGATGAGTTTCTTTCTTACTACGCAGGGTTCTCATAATTGGCATTGCTTGGTACTAA
GTCAAGTAGATCATTTATTTTTTATAACGAGGAATGAAAGCATATGAGATAGGTAAACTAGATTG
GAGGATAGGCTTCTTGTACGACTAGTTCTAGGGATAGGTTATTTC
Right flanking sequence: Indices 188178 -- 188677
GAAATTCAGTTTCAGAATAGGCGCTTATCTATCATATATAGTTAGTTGTCTTTGCATTTCTTGTG
ACTAGGCATGGCATTTACTAAAATGGGGCTTCCTTAGGATTAGGCAACATAGGGATTGGGGATCT
ACTAGAATATGTGAATGTCTTAGGTACAATTCACTAACCTATCATCTCACAAAAGTAGGAAAGGA
AAGTTCGGGATTTGGCAACTGGTGAGCAAGCTGGGCTCAGACTCGGTCTACGCTCCGGGGTATAA
CTGAGATGGGTCAGAGATAGGCTACGAAAGTACATATTTGTGGTTCGAATGAGGTACGAATATAG
TTTCAGTGATGTTTTTTTCCCGGAAATAGATAGCTCCGTGTTTCTACAACCTTCTTTTCCCAAAC
CAGAAATAAAGATAGATACGACGAACTGCATTTCCGAAGTTTTAAGCTTCTATATCTTCCTATTT
CCATAATAGCGTCGATCGAACCCTAAAAAAGTGCCATTCGGCTCA
Found at i:221895 original size:23 final size:23
Alignment explanation
Indices: 221865--221908 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
221855 AGATGGGATG
221865 AAGGCAGGGCTGTCAAGCCGGGA
1 AAGGCAGGGCTGTCAAGCCGGGA
221888 AAGGCAGGGCTGTCAAGCCGG
1 AAGGCAGGGCTGTCAAGCCGG
221909 AAATCGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.25, C:0.23, G:0.43, T:0.09
Consensus pattern (23 bp):
AAGGCAGGGCTGTCAAGCCGGGA
Left flanking sequence: Indices 221365 -- 221864
TTGTTCCGGTGGCGGGTGCTCTTGCTGATACGAGGACAAGGCTCTTTCCTACTTTAATAGGCCGA
GAGTGGGGCGGAGTTTCGGGTGGAGTTAGGCGGGGAGTCGGGCTTGTGTTGTAGCCGGACGACTT
TAGAAGACCAGTGCCAGTTAGTCTTGCGCTTGAAAGAAGACAGCCCACTGGTAGAAGAAGTTGAC
AGTTGAGGTGCGCAGCGAATTAGCACCTCGAAAACGAATCTGAAAGCAGCTTTCCGTAGGCGAAG
AATGAATGCTGTAGGGCCTCTCTTAGTTATGTACAATGCATGGAGAGAGACGGAATGCTGCAATT
TTATTACAGTCCTGGAATGCCAATCGATATTTCCATAAATCCGGAAAGAGAACCACCGCAGTACT
CGGTTGGATATTACTAAAAGAGCCATTCAGGATAGTATTAATCGTTGAAATGAGTTGTTTCGGAC
AGTTTTTGAATGATTCGCGTTAGCCAGGGAGTTAGAGATGGGATG
Right flanking sequence: Indices 221909 -- 222408
AAATCGAGTTTTCTTTTATTATGCCTATTTCTTGGTTTTGAGTATAGTTCTGAAGTGATAGTCCT
GAATCGGTAAGAAAGCGACTCCCTAGTAGCTGCTGAAGAAGCTAAGAAAGAAGCCAAAGAAGAGG
TCAAACATTGGAACAGCTGGATCAGAAGGATCGTTGGCAATTGTTTTGGAGAAATCTCAAAAGAG
AAGATACCCTTTTTGTAGGAGGGATTCCAAGTAGCAGTGTGTGGCTGCTGAGAAATCTGAGTCGT
TGATCAATTACCATGCTGTGTCTGTATGGCTAACTCCTCCCATTATCTCTTGGCTTCATTTCCCT
GTCTACACAAGCATTTGATTATATAAGGACGGCGATCGAACTCAAACCTAAAATAAACTCAAGCA
GTAACGGTCCACAAAAGAAAGGATTCAATTCAATAAGTACATCATTGTCACGAGTCAATTTTGAT
ATACTTGTGAGGGAACATGTCAAACAGAAAAAGATGCAAAGCTCC
Found at i:231226 original size:13 final size:13
Alignment explanation
Indices: 231208--231232 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
231198 GCAGTGCCAA
231208 GGCTTCTGTACTC
1 GGCTTCTGTACTC
231221 GGCTTCTGTACT
1 GGCTTCTGTACT
231233 GGATCGAGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.24, T:0.40
Consensus pattern (13 bp):
GGCTTCTGTACTC
Left flanking sequence: Indices 230708 -- 231207
AGGGTGTTTTTATTTATCAAAAGAAGTATGCCCAAAACATTCTCTCTAAGTTGAAAATGGAGAAT
TGTAATCCGGTAATGACACCACACCATTGTTGGTGAATGAAAAGTTGGTGAAAGAAGATGGTAGT
GGTGATGCCGATGCGGCACAATAGAGAAGTTTGGTTTTTCCTTTCTTCCCTAGAGAGAGCTTGGA
AGAAATCAGACTGACTGACACCTAAAAAAAAAAGAAATCTGCCAAATCGGTTGTCTTGTCCTACT
AGACTATTATGGGTTCGGTCACCTACCAATTTGATTACTCAGTGAGAAGCGGATAGGCAGGTAAG
TCAAATAGCTTCATTCTGACAAGGAAAGTAGAGAACAATATCAAAAACTTTCTAGAGAGTGGAAT
ACCGGCTAGAAAGGTGGCACTAAGGTTATCACACCAAAGAACCGGAAGTGTGCAGCGAAGTTCCG
CTAAAAGAGACTGTAACCAGGTCAACTCTGCTGCTGCAGTGCCAA
Right flanking sequence: Indices 231233 -- 231732
GGATCGAGAGACGGTAGGTAGGCTGCTTGCTTCTTGGCTGACCAGGAAAGCGGACCCGTACGCAA
TAACCTGTAGTGGATTTCCTGTCATTCGGGCACCCAATGAGTATCAAAGAACGTGGAGCGAAGAA
TGTTGGCTGAAAAAGAGGCCATATGATATCGTGCCCTTCAGATAGCTTCGTATGCGCTTCAATGC
TGACCAGTAAGGAAGAAGCTAAGGGCGTGGCGGGATCCCAATCAGCCGAGCAGGTTCTAAAGTGT
GATATAGGCTTAGAGAACGTATAGGCAAATGAGGATGGTCAAGAGTGCTTGTCCGGGAGCTTTCT
TAAGATACCTTAGATAGAAAAGCTTCCCAGTAATGTTGTTGAGGGTCACAAATATCGGTACTGGT
ATTGGTTGGCACAACTACTTCAATTTTATTGGGATTATTTTGGGAATGGTTGGGCATATGAAAGG
AGAGCTTTGAAAAGAAAAGAAAGAATTCTTACCTAGTCAAGAGAG
Found at i:238218 original size:18 final size:18
Alignment explanation
Indices: 238189--238244 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
238179 AACCCTAGTC
238189 TACTATGATATCTGGCTTA
1 TACTA-GATATCTGGCTTA
*
238208 TACTCGATATCTGGCTTA
1 TACTAGATATCTGGCTTA
* *
238226 TCCTAAATATCTGGCTTA
1 TACTAGATATCTGGCTTA
238244 T
1 T
238245 CCTCCTGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
18 29 0.88
19 4 0.12
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (18 bp):
TACTAGATATCTGGCTTA
Left flanking sequence: Indices 237689 -- 238188
ATGGACTGAAATGCTTAATCTATATATCGAGAACATTGTTTATATAAATATTAGTTTCCAGGAAT
CAAAGTAATCCCAAGCAATCTAATAAAGAGGAGGCAAGTACGCTTTCTTTCCCTTGCTTTCCAAC
AAGGAAGGGATTGAGCTTAATGAAAGAGTTACCTTATCTTTTTAGAATATACCCGTAGAAGAAAG
AGAGTACGCTATTGCTTCCGCTCATTGACTACAAATTGTATGAGACTGGAGGAATTATTCCTCAC
CTCAGTATTACTCGCCATGTTCGGTTTCCCGACATTTCGTACTATTTTGATTAGTAAGCGCTTTC
TCTCTATTGCTAGAATAAGGTAGCGCTCAAACACAGTTAGTTAATAGTATTTTGCTTGATGTTCA
TGTATTTCTTTTACACACAGACAGGATAGGGCACTTTGACTTTTTTTACTAATTAAGTATTGCTC
CATATAGCACTCTCTAGTAAGATGGTGTTTTGCCGAACCCTAGTC
Right flanking sequence: Indices 238245 -- 238744
CCTCCTGCAGCATTAAACCATAGCTTAGCGCTGCGTTGAAGAGACCCGGGACTTTCTTTGTGCAC
TCTCGCTTCAACCGTCTTGTCTCTAGTGGTTGCAACACAATAACAAAGGAATAAGTCTACTCCCA
TGAACAGTTATGTCAGCTGCTATTGTAACAGCTGCGTTCCTTGGTTTATTATATAACTCCGAAGT
GTGACTGGAATTAATCAAAATAAAATATTGCTTACTTACCTGAGAACCATTTCTACTTCAGAGTT
ACTTGTATCTTCCTTCAGCGCATATTTCATTCATATATGGAGCTGCGTGAGTTTATTTGAAATCG
ACCTAGGAGACTATTCCCTAGCCTCTTATCATAATATGCTTATCCTGTACCCTTACTTACCCTTA
CTCCTATTACTGAACATATCTACATACACCATTACCCGCATCATAGAGATAGCCACCAAGATAAG
AGATAGCCAGGTCGGACGTTATCTCTGAATTTCTCAGCATATTCA
Found at i:238245 original size:18 final size:18
Alignment explanation
Indices: 238196--238247 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
238186 GTCTACTATG
* **
238196 ATATCTGGCTTATACTCG
1 ATATCTGGCTTATCCTAA
238214 ATATCTGGCTTATCCTAA
1 ATATCTGGCTTATCCTAA
238232 ATATCTGGCTTATCCT
1 ATATCTGGCTTATCCT
238248 CCTGCAGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (18 bp):
ATATCTGGCTTATCCTAA
Left flanking sequence: Indices 237696 -- 238195
GAAATGCTTAATCTATATATCGAGAACATTGTTTATATAAATATTAGTTTCCAGGAATCAAAGTA
ATCCCAAGCAATCTAATAAAGAGGAGGCAAGTACGCTTTCTTTCCCTTGCTTTCCAACAAGGAAG
GGATTGAGCTTAATGAAAGAGTTACCTTATCTTTTTAGAATATACCCGTAGAAGAAAGAGAGTAC
GCTATTGCTTCCGCTCATTGACTACAAATTGTATGAGACTGGAGGAATTATTCCTCACCTCAGTA
TTACTCGCCATGTTCGGTTTCCCGACATTTCGTACTATTTTGATTAGTAAGCGCTTTCTCTCTAT
TGCTAGAATAAGGTAGCGCTCAAACACAGTTAGTTAATAGTATTTTGCTTGATGTTCATGTATTT
CTTTTACACACAGACAGGATAGGGCACTTTGACTTTTTTTACTAATTAAGTATTGCTCCATATAG
CACTCTCTAGTAAGATGGTGTTTTGCCGAACCCTAGTCTACTATG
Right flanking sequence: Indices 238248 -- 238747
CCTGCAGCATTAAACCATAGCTTAGCGCTGCGTTGAAGAGACCCGGGACTTTCTTTGTGCACTCT
CGCTTCAACCGTCTTGTCTCTAGTGGTTGCAACACAATAACAAAGGAATAAGTCTACTCCCATGA
ACAGTTATGTCAGCTGCTATTGTAACAGCTGCGTTCCTTGGTTTATTATATAACTCCGAAGTGTG
ACTGGAATTAATCAAAATAAAATATTGCTTACTTACCTGAGAACCATTTCTACTTCAGAGTTACT
TGTATCTTCCTTCAGCGCATATTTCATTCATATATGGAGCTGCGTGAGTTTATTTGAAATCGACC
TAGGAGACTATTCCCTAGCCTCTTATCATAATATGCTTATCCTGTACCCTTACTTACCCTTACTC
CTATTACTGAACATATCTACATACACCATTACCCGCATCATAGAGATAGCCACCAAGATAAGAGA
TAGCCAGGTCGGACGTTATCTCTGAATTTCTCAGCATATTCAAGT
Found at i:246480 original size:21 final size:21
Alignment explanation
Indices: 246438--246480 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
246428 TATCTTCCAT
*
246438 TAGTAATCCTATCATTCCAAA
1 TAGTAATCCTATCATTACAAA
* *
246459 TAGTAATCCTGTCATTAGAAA
1 TAGTAATCCTATCATTACAAA
246480 T
1 T
246481 CTCATTGTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (21 bp):
TAGTAATCCTATCATTACAAA
Left flanking sequence: Indices 245938 -- 246437
AAAAGCACTTCGGAATCCTAGAGGAAAGGTGAAATGCTTGGGGGTAGGTCAAAAGCGCAGTAAGG
ACACCAGTCTCAGTCAGGGAAAAGAGAAAGGAGAAGGCCTTATGAACGTATGCTTGATGCTAAGT
GAATCTTCCCACAAGGCGGCTAGTCACTTACTGGATTGAACTGTTTTCAGTTCTTGCTTTCCAAC
CGTAACTCCGTGATACACCACCTTTCTTACCCGGCTTTCTGAATAGGGGCGGACTCCACTACTTG
TTTGGTAAAGCGTGCCGAGCAACACTTCCCTACTTTCTCTTTGATCTAGATTCCCTCTCTTCTTC
TGCACCTTCTCTTCTTCCCAATTCCTGGAATGAATGTTGTTTTCAGTGAGTGTTTTCATTACTTA
TATTCTTCTCAATGAATAAGAGTCAAAAAGCCAGGTAATTCAGTCAGTCAAGGAAGAGAGATTAG
TGTAAATGGTAAATTGAATATTGAAAGAGGCTGTCTATCTTCCAT
Right flanking sequence: Indices 246481 -- 246980
CTCATTGTCTACATCTTTCTTCCCGTGATTTATCTATAGGAGTCTAGTAAGAAGCATAATGTGCT
CAAACTCAGAGAGAATGAACCTGCCGTTAGTAGTAAGTAGATTCTTTCCCGGCTATCCATCCTCC
CCCTAACAGCCCCTCTGAGCAATTAATCCCTCCTGAATATATTCCGTGCAGAAACCAGCTTTGCT
TCCTTCTTACTTTTTCGAGTAGTCTAGAGCTGCTGGGAAATAGTGAGTTGAGAAAGGAGATAGTG
AAACTTAACTAGTCTTTGTCATGGAAGGGAGCTACTTCTCTCGAGTACTATCAGTACAGAGGACT
TACTCATAGGCAAAGGTTACCAGTACATAGTGGATCTATTCTAGTAGATGGATGGACCACACCAA
CCTCTCTTTCTAGCCGTAATCGATAAGGAAGGAAATATCATGGCATGTCAAAGCAATAAATCTAT
AATAAATAGGTAAAGAAAGGCATATACCCTGGGGTAGGGCACCAT
Found at i:294119 original size:30 final size:31
Alignment explanation
Indices: 294077--294135 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
294067 AATTCTGTAG
*
294077 AACTGTACATGTAGTTAAGCTAATTTGATAT
1 AACTGTACATGTAGTTAAGCTAATGTGATAT
294108 AACTGT-CATGTAGTTAAGCTAATGTGAT
1 AACTGTACATGTAGTTAAGCTAATGTGAT
294136 GCAAGCAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (31 bp):
AACTGTACATGTAGTTAAGCTAATGTGATAT
Left flanking sequence: Indices 293577 -- 294076
AATTACCACTCTTTGGGCATGAAATCTCTCACCACTGCCAAAAACTTTGAAAGAACATACCCCCT
CTTATTTCTCTCGTAATAAAGAGAAGTCTACACTAATCAACCAAGGACCATTCCATTTAGTTCTA
ATCTTTCTTAGAACATTCAATCAAAATCTTCTCAGAATAGAAAGAAGAAAGGCGTACATATACAC
TTATATAGGCGCATCTCAATTTAGTAGTTTCTTTATCTTTACAAAATAGAGTGAAATAGAATCAT
TCGACTTTTACATCTAGAAGACAAGTCAATAAATTATCTGGACCAATACCTATAGAAAAAAGTAT
CATCAGAAAGCAAATAATGCCCAGTATCAACACAACTATGGACTTTCTTAAAGATCTTTTTATAC
TATATTAGTCTTTTTAGGCTATACTACGACATCTACCCTATGTTCCCATAACTTATCTTTTAGTA
ATAATCTACTCTTTCTCTTATTCAGCCTCCTACCCAATTCTGTAG
Right flanking sequence: Indices 294136 -- 294635
GCAAGCAAACTCACTATATCTTCAGTGGTAAGTTCAGCAGAGCTATATCTTTCGTATTATCCATG
ATAAAAAGTGTGTTATCCTTTTTTCTTAACAAAAGTCTCTATATGAAGACAATAGTGTCTTTTTC
TTTATTTTCAGTAAAATGCCATACTGATTAGGTGCGGTAGCTTAATGCCGAATTATAGGTTTGGT
TCTATGCCTAGGTACAGTCAACCACTTATGTATGATTGATGACTTCCCTCTTACCTACTTTGTAT
TCTTGCCCTTTTCAGTCGTACTATTTCTAGTCCTTGTTTTCCTTTGCAGTCGGCGGGATTGCTTT
TTATAAGCCTGTTACGCGAGTTTTTCTATAACCTCTAGATATCTATTATGAGTGCCCTCTTTGGC
TTGCTTGTATCAAGTCAACCCTACCTTTTTTTGTACTTTACGAATCTGCCCCTGCCAAGTTATAC
TATAAATACATAATCCCTGTAGACATACCCCAGTAGTGTAAATTC
Found at i:308418 original size:19 final size:19
Alignment explanation
Indices: 308394--308438 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
308384 CGTAGCCATC
* *
308394 CATAAGATTGTTGGGCGGA
1 CATAAGATTGTAGGGCAGA
308413 CATAAGATTGTAGGGCAGA
1 CATAAGATTGTAGGGCAGA
308432 CATAAGA
1 CATAAGA
308439 GTTGAAAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.22
Consensus pattern (19 bp):
CATAAGATTGTAGGGCAGA
Left flanking sequence: Indices 307894 -- 308393
AGTTGTCTACTCATGAGAGAGAACTCTTGCTTAAACTGTAGTCGTTTCGTACCATGCTCAAGGAA
GTTTGAAAGAAAGATATAAGAGTGGCAACTCGCCTATAGGAATACAAGACAGAAGTTCAGAATAA
AAGACAACTATAAGTTTTCAGTGCAGCTATCAGAAGCCTGCTATAAGTAGTAAGTGAGCTAGAGG
ATTCCAAGTAAGGAATAGGGTTGCAAAGTGGAGCTGTCGTTTAGAGTGTATTACCAAGCTGGTAT
CATTGAAAGGAGGATTGCGAGTCGCCTACAAGATTTCATTCTACTTAACAGTTTGAAGAGCAGCT
CTAATTCGATATGTTTTTTCCATAGTGTAGCAGTTTGATTATCTCTCTTTATCGGATATAAGGAA
GGCTTCCGTTGTAGTTTCTAATGTTTTAGCAGAATGCAAGATAGAACCCAACAACGGTTGTTTAC
CGGGCTTATGAGATTGATTTATTGCTAGAAGCTTTCGTAGCCATC
Right flanking sequence: Indices 308439 -- 308938
GTTGAAAGCTCACTTGTAGTTTCGTATGTATTAGCTAGGCAGATAGAAGAGTATAAAGCCGAGTT
CCGAAATTGCTTTCCCGCCTTTGATGCTGGGTTCTGTCAGCAGTTAGATGCAGATTGTTCGGCTA
GTCAGAGAGCTATGAGTAAGGCAGCTGGCTGGGATGTGGGTGGTAGTAGTACTGATAAGGGTGGT
GAGGCAGGTCAATGGGACAGCTGGGAGTCTATATGAAAAAAGTCTGAGGTGGGTACTAAAACACC
TAAAAAGAATAGTTCTCCTTCCACGAAAGTAACTCCTCGTTCTGGTAAAGGAGCTGTCAGGAAGA
CACCTGCTAGCAAAAGTGCTAAGCAGTCGGGTAGCACTGGTAGAGCTGTTAAAGGTAAGGGTAGT
GGTTCCAAGAGGGGTGCTAGCAAAGCTTCTACTGACATGCCCCCGGTTTATGATTTTGGGGCGTG
GGGTGGAATTTTAGGGGAATGTTGCTACTCAGCATCAGGAGGAGG
Found at i:319164 original size:32 final size:32
Alignment explanation
Indices: 319128--319194 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
319118 TCGTGACTAC
319128 ACTTAGAAAGATAGACCAAGTACGCCCCCTTT
1 ACTTAGAAAGATAGACCAAGTACGCCCCCTTT
319160 ACTTAGAAAGATAGACCAAGTACGCCCCCTTT
1 ACTTAGAAAGATAGACCAAGTACGCCCCCTTT
319192 ACT
1 ACT
319195 CCTACTGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.22
Consensus pattern (32 bp):
ACTTAGAAAGATAGACCAAGTACGCCCCCTTT
Left flanking sequence: Indices 318628 -- 319127
TATGCACTCTCGCGTGTGAACGTCTTATAGCCATACATGTGGCTTGTTCTTATTTGTTGATTTTC
AGAAAGAGTTTCTTCATAGTTTTATCTGTAAGCTGCGCTTGTGTTAAGGTCTCAAAAGGGTTCAC
TTCAGATCCTTATTGTTATCACTGGTGGGGTATACTAGCTCTATCAACTCAGATGGAAAGCCGCC
TCACTACGGACGGGGAGTCTCTAAGTAGCTAATGCTTTCATAGTGAGAGAGGAGAATACAAATTA
AGTAAAAGGCGCTTTTGGTGACTCGGTCTGGTACGCCAAACTCCGAGAAGACACCGTTCAGATAG
GTAGAATCAAGCGAAAAGGCTTCTACTCATATTTTGCAATCAAGCGAAATGAAAGAAATGGCTGA
GCGAGAGAGAAGGCACGTGTCAATAAGGATACGGAAATCCAAAGGTCGAAAGATTTTCCAAGAAA
TGTATAAAGTACTCCCGATGGGTAGACAACGATCTTCGTGACTAC
Right flanking sequence: Indices 319195 -- 319694
CCTACTGTGGGCAGGGCCGCCCACCAAGAAGGCTAACCGCCAGAAGAAGGGAGTTGTTTGTTGAC
CAGGCGCAACTATATATACTTTCCCGAAGCTTTACTACGTACGCTTTTGAACAGAGTGTCCACTA
CTCGTTCATGCATGATAGGCTATTAAATAAAAGTTGGAAACGATTGCCAATAGAAATTAGTACGA
AATAGCATGATGATGAGCAATATAAAAAAACAGGGTATAGAAGCATAATATCTGATGTATGTATA
AAATAAGGAAAGGTGTATGGTTTAGATGAGTCTGAATCCGTCTTAGTGTGTGGTATGTTTAAGTT
GATTGTATGTAGCTTGTGTTGTTGTGAGCAGCATAATAGATGTATGTTGCAAGAAATTAATGCTA
AATAAAATAAAGAAAAGTGTCAATATGCTCCCCGTGGTAGTTAAAAGGCTTGTCTAAGAAAGCAA
ACACGCAACGCCCACCATTAAGTAATGAGATTAGTTTTTTGACAG
Found at i:326854 original size:18 final size:18
Alignment explanation
Indices: 326828--326863 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
326818 GTTTCGGGTG
* *
326828 AACCCACTCTGGTTTATC
1 AACCAACTCGGGTTTATC
326846 AACCAACTCGGGTTTATC
1 AACCAACTCGGGTTTATC
326864 CAAGAAGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.31
Consensus pattern (18 bp):
AACCAACTCGGGTTTATC
Left flanking sequence: Indices 326328 -- 326827
ATACACTTAGCCCTAAATTCGAATTGTAAGCTGGCACTGTTCAAAGCTTATATTCATAAGGCTTT
CGACACGATCAGCTGTACATTTCTGCTCAAGATAATTCTGAAATAAGGATTGGGTGCACAATGGG
CTGAATGGATCAAAAGGCTTGTTCTACCCTTTTACTCACAAGTCATACTGAAAGGGAACGCGGGT
AAGAAGATCTTTCTCAAAAGGGGCGTACGGAAGGGGGATCCCCTATCCCCTATGCTTTTTCTCCT
AGCATTCAATTTCTTTTTCCTTCTATTCGAATGCACGAAGTTGTAGCAGGTGGGCAAGCTCTGCT
AAAGCCATGTTCAAATAGGTGGGTAATCACTTGCCCCTCGCCGTTGGCAGAAGATAAGAACTCTA
GGCGGACAAGAGGAGGGGGAGGTCCAATTATGAAAGCCGGACCGCATTCCTATGCAATTGTGAAT
TGCTTTAAGCAAGGAGAAGTGTTAAGCAATTGAAAGTTTCGGGTG
Right flanking sequence: Indices 326864 -- 327363
CAAGAAGGGGAAGCGGATCTTCTTTTCATAGCCGCCAACAAAGCATAACAAGTTCGATTCTTTAA
GATAAGAAAGACCTTTTTTGAGTTTACGCACCTCGATGATGGATTCTTTCTCGTATTTAGTATGT
CCTCGTCGCCCCACCCATGAGACGCAAAGAATGAAGCGAGCCGTCGTCGGAGCTGACTGAATTTG
ATCCGAACGCTATATGTTTAACACAAGTCGAACCAGGCGCTTTGTGCATTTGTTGGATTTGCTTA
CTTGACTTACCCGTGAGCCAAGACGTGATGTTCTAACGTTGTCGTAGATAAGGGAATACTCGTAA
GCGAAGGGAAGAACGAAGATTCCCTGGATGATCTAAAGAGCCTTCAATGGGACCTAGACAACTCA
GTAAAGCGCGAGGAGATTCCAAATAAGTTTTTCCAAAAGGGATAGGGGTGGGAGGTACGTTTTCA
TTCTCGTGTGTGTGAGGTTTTCGTTCGTAACATGCCGTAGTTACT
Found at i:336312 original size:12 final size:12
Alignment explanation
Indices: 336295--336319 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
336285 CCGCAGATGA
336295 AGGCGCGTAGCG
1 AGGCGCGTAGCG
336307 AGGCGCGTAGCG
1 AGGCGCGTAGCG
336319 A
1 A
336320 ATTCCATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.24, G:0.48, T:0.08
Consensus pattern (12 bp):
AGGCGCGTAGCG
Left flanking sequence: Indices 335795 -- 336294
CTCGGGCAGTTCCCTCCCCCGTGTAAGGTACGCCAAAGTGCGAGTCACCCTTTGCTGCAACTCCA
ACATACGGACAGCTTTTGCCAGTGTATAATTCCCTAATTAAGGCTCAGGGTCTACCCCAATAATG
TACTGGACACCTTTATCAAAAGAGTAGAGGGGGATCAAGCTCAACGCTCCGCGCCTCTTCTTCCA
CGAGGCATCAACTTCTTCCATTGAAGCTTGGCGCCTAGGACAAACAGCGCGGGATACACACTCAC
GGTTTCCATATCTTCCTCAGCTAAGACTATACGTGAACATTGGAACAGCTCACCTATCAAAGCTT
TGAATTGGTCTGTGCGGGCTAGCTCATACAGCTTTTTTCTATGGTCTACTGAAAGTCAAAAAATT
GATTGGCGGAGTAAATAGTGCCCCGTGCTTCAGCTTCTGTTTGAACTTCTTTTTGATTGAATACC
GAGCCGAACCATTTGGGTGATGTGTAGAATGCGATCCGCAGATGA
Right flanking sequence: Indices 336320 -- 336819
ATTCCATTTCCTTATTTTCCATACTAGATCGACTCAACATTCACTACCTACCTTAATCGCTCTCC
ACGGTCACCTCTTTTTCAGTGTGCTTTATAGGTTCAGAAGCCGACAGTATCGAACAACAGCAACA
GATGGATCAATAGAGTTGATAGTCGCTCTACTCAATAAAGGTGGGGCTCTACCTAGTTTACGAGT
TGTCTCTTGATGTTTCGGCTGAGGCAGGAGTGGAGTGATCCGCTTCAAAGAAAGGTCCAGGTAAG
TTTTACTATAATGGTCGTACTTTATTTGCTTTCGTTGGTGAAGCTTGCTAGGGTTTCCTACCTAC
CCGGTAATTAAGCAGACTACCCAATTTTCGTAGTAAAATGAGTGCTTTCGCGGCGAGGCTAGCTT
TCTTTAGGCTTAGGCAGCAGTTTCCTTCAAACGGGATTGATGCAGTGCACACGTCGTTACTAGGT
TTCCCTTTTTTTTGTCAAGTGATTCGCTTCTTGCCCTCGTCGTCC
Found at i:350114 original size:30 final size:30
Alignment explanation
Indices: 350075--350131 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
350065 CTTATTAGGC
*
350075 AAGCCGGTAAAGACCTAATCTTCGGCAGAA
1 AAGCCGGTAAAGACCTAATCTTAGGCAGAA
* *
350105 AAGCTGGTAAAGACCTACTCTTAGGCA
1 AAGCCGGTAAAGACCTAATCTTAGGCA
350132 TCGATAGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (30 bp):
AAGCCGGTAAAGACCTAATCTTAGGCAGAA
Left flanking sequence: Indices 349575 -- 350074
GAAAGCTGATGCTCTTGCCTTTTCGCTCGTAACTACTAATGTTGCGAGTGAAAACCTACTTGACT
TCTTTGCTTACGCCATTCCTATGTGATTTTGCCAGGAAGGACTACTACTGAAAATAGTGGTTCCC
TGGTATTGAAATAGCTGCCTCTTCATGTCCAAAATCCTCTTGAAACGAGTAAAATGACATCGTCT
GCATGAAACTATAGGCAGGCTATAAAATATCTTCCTTGCCTGGGTAAGCTGATAGACCTATTTAA
TTGCTAGGGAAAGTCAAGTATGTATAGAAGAGATGCATATTTCTTAGAAGCAAGAGTAGCACCGG
TGTAGTAATTCATGTCCAAGGTATAGAATGAAGGTCATGGTTGAGTAGCTGGGCAAGAGATGAGT
TTATGGTAAAGCAAGCAAAAAGTACTAAGAAAAAAGAAGCCTGAAAACGTACCCACTCTTCTAGT
ATAAGCTTTTACAAGTAAGCCGGTATTACACTACTCTTATTAGGC
Right flanking sequence: Indices 350132 -- 350631
TCGATAGTAGGTATTGTCAATTTATTCTTATTTGAAAATCTCCTCAATCACATGGCCAGAGAAGG
GAGGTAAGGAAGAGTATGCGGATAAGATATAAGCCAAGGTGGCGCTAAGACCTCTAAGTCAAAGA
GTGAGGTTATAAGGGGAGTATTTAGGAATTATGATGTATTTGATTTCTAAAACATTGAGTCGTAA
ATGACCTACTTTGTTTCGGATGAAATATTTATTGACTTTCCATTATACCCGTCTTCCAGCGAAGT
GCTGTAACTCTCTGACATCTACCCTCTCCTCCAATCAAGTATCTAGAGAAGGTAGCGAGCCTTTT
GAGGTATGGCCTGAGAGCGCCTTATAGTCTTGACCCGAATGCTTTCATTTCTGATCTCACTGGTC
TCAATGGACTAGAAAGAACTTCTTTGCCACCGCAGAAGGAGGTTTTATTCAATGCTTCTACTCAA
CTGCTTGGCTTGGGTAAATAGTGTGAGTCAGACGACAGCCAGTTG
Found at i:356162 original size:16 final size:16
Alignment explanation
Indices: 356141--356171 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
356131 GACTGAAGCC
*
356141 GGGAAGTAACTCCTTG
1 GGGAAGTAAATCCTTG
356157 GGGAAGTAAATCCTT
1 GGGAAGTAAATCCTT
356172 TATCCCCACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (16 bp):
GGGAAGTAAATCCTTG
Left flanking sequence: Indices 355641 -- 356140
TACAAGCGACATTCGTTTTTTTATAACTGGGTCCCAAAACTGAGAAATTGCGTCTGCCACCGCGT
ACGCATCACCCGGGAGAAGTCTAGTGCTTGAAGAATAGAAGTTCTATTTTGTTTTCCTATATAAG
AGAGGCAAGGAAATTCATATCTAGTACTGGAATAGCTATATGCGGAATTTCACTTCATCCTTTGA
ACACTGATTAGAATGCCTGCTGCAATTGCTGCCTACACAAGTAGGTGTTTTTTTCGGTCCATAAG
GTTCATCTATCAGCGCAGGCTGGTTGTACCTCGCTCTACCTATTCCTATAAGTAAGTCTAAATAC
TAGTTTCCTAGGCTCGCTTCAACGCTCGCGTTTTTGGGCTTAGAGTGTAAAGGAATAGGCTTTTC
AAGAATACAAGAAATGCGTATAGGAGCGTAATAGCTAGAACCATTTCTTTATGCACGGGAACATA
GGCTTGTTAGGTAAGCTGATATGTCAAGAGAAGAGGACTGAAGCC
Right flanking sequence: Indices 356172 -- 356671
TATCCCCACTAGCTCTTGTCGTAACGTTTATGCATCTCTTGACTTGATAACAACTACATGACCTG
CTTGGCTAACTAAAAGAAGCTTCTCGGTGCATCTATGTTGCATATCTTTGCTATCGGTGACTTAC
TTGTTTATGGGCTTCCCCTCGCTTCTAGTTGTTGACCTATACCTGGCTCCAACACCTATACTTCT
TCTATGCATATTATCGTCAATAGTGTATTTGCTTTTTCTCTTTCTTGTCATGTTTCGGCATAAAC
AAGCACCGGCTGCGCTCAAGAAAGTAGTACTTTTGCATATATATGAACCTACTTTTTTTATGAAA
TCGAGGTCTCGTATTAGGCAAATCGATGAGTAGTACTTTTGCATATATATGAACCTACTTTTTGT
CAGAAAATCAGATACTCACCTTAGGGAAAAAGGCAAGTAGGAGATTTTTCCCGGGTTTCCTCAAA
TTCTACGCTCAGCCCCTTTTTCACGCGCAACATTATACGTTGCTT
Found at i:366858 original size:74 final size:74
Alignment explanation
Indices: 366768--367109 Score: 684
Period size: 74 Copynumber: 4.6 Consensus size: 74
366758 CTCGAAAAAC
366768 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
1 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
366833 TAGCTTTCG
66 TAGCTTTCG
366842 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
1 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
366907 TAGCTTTCG
66 TAGCTTTCG
366916 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
1 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
366981 TAGCTTTCG
66 TAGCTTTCG
366990 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
1 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
367055 TAGCTTTCG
66 TAGCTTTCG
367064 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCT
1 CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCT
367110 TCGAGTTCTC
Statistics
Matches: 268, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 268 1.00
ACGTcount: A:0.15, C:0.32, G:0.23, T:0.30
Consensus pattern (74 bp):
CTTTCCTCCACTTCTATCGAAGCGGAGCCGGAGCTGAAGCTCGCCTCTCCTGTTTAGTCGAGCTT
TAGCTTTCG
Left flanking sequence: Indices 366268 -- 366767
CCCGGCCAGAATTGAGGGGAGCTTCGCTCTCCATTGAGTAAGGAAATCCAGCCTCGGGAATTCAA
GTAATTAACTGAAATATCCAATAACATATAAAATCTAAATGTTAAAGCATAACGAAAGAGTAAGA
CCTCGGTCGTGCAAATCATTCCGAGGAGGCCGGTAAATTCCTTTCAACAAAATGCAAGGATTCTC
CGGGGGATAGTAGCTATTAAAGCCCTGGGCTGTGGACTCAGTATGGAATTGAGATAAAGCGGTAT
GCCAAGACAATAGAATAAACAGAGCCAGGAAGGAAACGCACCACTTGCTTGTCTTGCTTTTGATC
CAAGTCCATCATTGCTCTCTTCGGGGCGATAGAGCATGAGATATATAGAGAGCGGGTCGTGGGCT
CTCGCGCATGGTATCTTTCTGGGGGAGCAGAGGTAGGAAAAAAATACGCGGTTTCCTACTAAACT
CGCTTTCGCGGTGAACGCTTCCTCTCCTGTTCAGTCTCGAAAAAC
Right flanking sequence: Indices 367110 -- 367609
TCGAGTTCTCCATCCATCTGCAAAGTAGATATGTAGTTTCGGTAGTATTACCTGGGCCTACCCGA
GTAGCTAGTCGGTATCAGAATGAAAGGAAGCAATGAGTTTTCGAGCCAGCTGTAAGGTTTTCAGG
GAATTTCAGGTTTCAAGGCAGTGGGAGTTAACAATAAGATGAAAAGCCATAAGCAGACTTATCGT
ATTTATTGTATTGAGCTTTAGTTTATGTGGGGCTGGCAGCAGTTCTCGTTTCTGAAGTTAAGATT
TGCAAGCCAAGAGTCAAAGTAGTACATAAGATTGCTTGCCGGAAAAAGTTAATATGTCGCTTATG
AAGCTTTAGCAGCTCAAGTACCAGTGTTTTACCAAGGGGGGGTGATAAGGTTTCTTACCAGCTAT
AAGATATAAAGTAAAAAGGAACATGTCAACTCGGACATCAGGTTTCCAGGCAGCCACAAGAAAGA
ATTGAAATGCCAAAAACGAATAGAAAGCTGTAAGTGCAGTGCTCG
Found at i:371216 original size:72 final size:71
Alignment explanation
Indices: 371009--371216 Score: 242
Period size: 72 Copynumber: 2.9 Consensus size: 71
370999 AGTGATCAAA
* * * *
371009 AAGTACTACTTTTGCATATAGGTGATTCCTACTTTTGGTCATACAAT-CAGATACTC-ACCTTAG
1 AAGTATTACTTTTGCATATAGGTGATTCCTACTTTTGGTCAGA-AATATAGGT-CTCTA-CTTAG
371072 GGAAAAGAG
63 GGAAAAGAG
*** **
371081 CTTTGATTACTTTTGCATATAGGTGATTCCTACTTTTGGTCAGAAATATAGGTCAAGTA-TTAGG
1 AAGT-ATTACTTTTGCATATAGGTGATTCCTACTTTTGGTCAGAAATATAGGTC-TCTACTTAGG
*
371145 GAAAATGGG
64 GAAAA-GAG
*
371154 AAGTATTACTTTTGCATATAGGTGATTACTACTTTTGGTCAGAAATATAGGTCTCTACTTAGG
1 AAGTATTACTTTTGCATATAGGTGATTCCTACTTTTGGTCAGAAATATAGGTCTCTACTTAGG
371217 CAAATCGATG
Statistics
Matches: 114, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
71 2 0.02
72 68 0.60
73 43 0.38
74 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (71 bp):
AAGTATTACTTTTGCATATAGGTGATTCCTACTTTTGGTCAGAAATATAGGTCTCTACTTAGGGA
AAAGAG
Left flanking sequence: Indices 370509 -- 371008
GTACGACGAGCCACGGGCAACTTGTACTCTTCAAGCCTAATGCTAAGAAGACTGCTACCACCACT
GATCAGAGGACTTACAGTTCCTCCTGCAACTTTTCTTTCTCAGCCTCATCAAGATGGTTTATTTT
CTTATTAGTTATGAAAGCTTTAGCTTTGTTTGTAATGAAAAGGAAAGAGAAGAAGGCGGCTGTAT
AGATAGAGTCTTTACGGGCAACGAAAGCGGTAGGGCAAGTTAAACATTCTCTCTTTGTCAGGCTT
AAGGTAAAGAAGGGCATAAGTCGCTTATAAGCCGGTAATAGGCTTTCGTTCTAGTTTACATACTT
TTAGTCAGATTGCAAGTGAAGTGAAATCAGCCAAGTTCTTTTTGTTATGAAATCCGGCAATAAAG
TCATACGTTGAAATTTCCGGGCTGATCAAATCCGATCACAATTTACAAAACCCGTGTTTTTTGGC
ATACTCGTCTGTTTCCCTAATAGAGTTACTAGAAAAGTGATCAAA
Right flanking sequence: Indices 371217 -- 371716
CAAATCGATGAGTAGAAGTTTTGCATATGGGTGAATCTTCCCCACAGATGCTACACTCTTTCTCA
ACTGATTATGAGGAGTCGAATCTTTCTCCAGAACTTCCACCCACTACTGCCACCCTTGTCATCCC
TGTGCACAGCCTCAGCAGCTTTCTCTAGAGAGTGAAATTCTGGTTGAGTCATGGGTTGGTTACCT
TCTCTATGCACCCTCTCTTCTAGCTTCTATCCCCAGACCTGGAATGTCGCCAATAGTGATGTACA
CTTGTAAAAACACCTAACACCAGCCCCGTTTGTAGGCTACTTGAGCATATGGTGGAATTCGTAAT
GAATCACACACTGCTACTTTTCTCAGAGCTCCCCGAAAATCAACTTTGTTCTTGGTGGCTGGATG
GATGCCCATTAAAATCCCCCGTGGGGACACTATTTTTCAGAACTAAATCTCATTCCAAGCTTCTA
GAGAGCGTTTCAAAAGCTAAAGGAGTACCTGACCTCCCCGCCAAT
Found at i:380495 original size:25 final size:25
Alignment explanation
Indices: 380464--380524 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
380454 AGCCAAGCCC
380464 CAATATCTTTAGTGAAGACCCCCTG
1 CAATATCTTTAGTGAAGACCCCCTG
**
380489 CGGTATCTTTAGTGAAGACCCCCTG
1 CAATATCTTTAGTGAAGACCCCCTG
380514 CAATATCTTTA
1 CAATATCTTTA
380525 AGCCACCAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (25 bp):
CAATATCTTTAGTGAAGACCCCCTG
Left flanking sequence: Indices 379964 -- 380463
CCGCTCTGCAAGATAGTAATAGTGTTAGAGTCAAGATATGCCTGTTTGTGCAAGCATGCCATGTG
TTCAGTATGCCCCGTGAGAGTAAATGAATTCGGTGTGCCCCATGTAATTTGAGTATGCTTCTTTC
TAGACTTTTGTTCGAAATAGAAAAAAAAAAGGACTACTCGTTGCAGTACTTTAAAGATCCGTCCC
CAGGTGAGCAAGGGCTTATATCGACTGAGGGGGTGTCAGGATGTTTTTCTAACTCTCACTGTTCT
TTCAATTCTCTGGCTTAGTTTGGTTCAACCCCCGATCGTACCGAATGTGTAGAGCCCGCCCGGGT
AAAGAGGCCGAGGAGACATGTTTAGTCTCTCCCCAGTCAATAGTTCAGTCTCAGTGTTCCCATTT
GGTTATCATTGTCTCTAGGTGAAAGGGTCTAGTCACGTCTTGGTGTTAATGTAGGGTTCTATCGG
TTATTCCTCTTATAGGAAGAGCTATGTAACTCCGAAGCCAAGCCC
Right flanking sequence: Indices 380525 -- 381024
AGCCACCAGGCACTACCAGTAGGTAAGCCACCACCCAATATCCCAATACGATATGATGAATGTAA
CCCAATAAATCCCCCACCAGTGTTTCTCCAAGGCGAGGTTGGCCCCAGTAGCACCGAACCAGTAT
GCCAATCCGTATAGTCCTATAAGATTGATCCTCTTGTCTAACAAGGTAGTATACCCTGCTTTCCA
AAGTCCCATCCAGGCCAACTTTACCACTATACCTCCAAGGTGAAGAAAATACAAGAATCCCTAAA
GTCGTCCTCATTGTTTAGTCCCACTTCCTATAAAATGTGAATTACCTACAATCCCCTGGTGTATC
CCCAACTCTTTAGGATAGATAGGCCATTAGCTTCCCGCTTTCCACAAAGAGTAGCCAGCTAGGAT
TCTCCCCTTTTGCTTTCTAGCTGGAAAGATTTCCCCTATGTATGATTCTGGGTCAGGTTTGAATT
ACTTCTTCAGGACCTGGATGTATTTCCCCGCGTGCCAGTAAGTGG
Found at i:381676 original size:18 final size:18
Alignment explanation
Indices: 381655--381690 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
381645 CTTCTTTTAT
381655 GAAATTCTCTTTTGCTTA
1 GAAATTCTCTTTTGCTTA
381673 GAAATTCTCTTTTGCTTA
1 GAAATTCTCTTTTGCTTA
381691 TATCTTGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (18 bp):
GAAATTCTCTTTTGCTTA
Left flanking sequence: Indices 381155 -- 381654
AGTAGGACAGTAGGAACGATAGGTGCTGCAGCAAAGACAGATACTTATACTTGGACAGCTTTTTC
GCATGAAAGGCAGAATTGGACAGTATTAGTTGAGTTGGACAGTACTTGAGGTATCTTGCACAGTC
TTGGACAGTAGTTACAAACAAAGACAAAAATATCTACAATAGTGTCAAAAAATATACAGGGTTCG
AATTGCCAGAACAACTATATTGGGCCCAGTAATCCAGTATTTCATCAACCATATATGTTAATTCT
CATGTGGGTAGCGCCTCCTTCCCATGGAACCGGAATTGGCTGAAAATGGGTTTTGAGCCGAGGTT
CTCTAGTCTGGCATTGTATTTTTGGTTAATTCAAAAACCTTGGGCACAATTCATGACGTGCTGGC
GCTTATGAGAAGAGAGGCGACCTGGCCAAAGATGAAAAGGGCGAAGCTTGGGGGAGTGGTGTTGC
ATGCCTGACAGACACGAACCAGGTTCATAGAAGTTCTTCTTTTAT
Right flanking sequence: Indices 381691 -- 382190
TATCTTGTTATTCGTAGAAAGAAATTCGAGTTCATTACTTTAGAATTAATAAGAAGCATCGTATC
GAAAAGAACAAGTGTAAGGAGAAAAGAGCTTCGCCAAGAGTAGGACAGCTTAGCTTATCAATTAA
GCTTCTAAATAAAGAATAAAGAGTAGTTCGTGTTTACCTTAGTTCACATTGTTTTAGTTCCTGAA
TGAACATACTAATAGTTAAGTTGGAGTTAGGAAGTCAGTTGGAGTTAGCCAAGGTTATAGCATAG
AGTGATTTGCTTCTAGCATGGAGCATAGCCAAAAGAGTAGCATAGTAGAGTCTTTCTTTGCTGAG
TAGAGCAGCTATCTACCTGTCAGAGCGATTTCTCAGAAGAGAAGGATTGTCCTTTGAGAGGTCAA
GGGGAGAATTAGGGGAAGCTCCGCTTTCCTAGTTCATGATAAATTCTCTTAAGCTTCCGCAGGCT
TATTTACTACCAGGCGGAGTTTCTTTCCCAACCAACGGACATAAA
Found at i:384240 original size:21 final size:17
Alignment explanation
Indices: 384201--384235 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
384191 TTCTACTAGC
384201 AGCTATGCTACATCAAT
1 AGCTATGCTACATCAAT
384218 AGCTATGCTACATCAAT
1 AGCTATGCTACATCAAT
384235 A
1 A
384236 TATAGAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (17 bp):
AGCTATGCTACATCAAT
Left flanking sequence: Indices 383701 -- 384200
ATATATACTCGCTGGAGCAGTATCCGTTTTAGTAACAGTAAGACTTGCTTGAGCTTTAGCTCTTT
CTTTAATAACAGCATGAGGAATCCCTCTTTCTAGAAGTAGTAGCTAGCTATTGTAGCTGTTTGTT
TTTCTTCCTGCTAGAACTTTCTCAGTAGTTGCTGTATCAGTAGTTGTACTAGCTGTGACAGTAAT
ATTAGTAACTTAAAAAGAAGGTACTTGAATTAAGTAATCAAGGTAACCCCATTAAGTACCCCTCC
GTATACGTATAAGCTGTTGCTTTAGTAGCTCCTTGAGTATACGCAGTTGCTGGACGACTAGTGGT
TCTAGACTAAGAGACGCGTCCACGCCCTCGTCACCGATTGCTACTTCGGGCAGACAATGCAGTTT
GGAATTCTTATTATTCTATTTCATATTAGAATATGATAACAAGTGCTGACCTATTCTCGTAGTGA
TGATGCAAGCACATCAAAAAAGGTTCCTCTTTTCTTTCTACTAGC
Right flanking sequence: Indices 384236 -- 384735
TATAGAGGTCTTCTTATATAAGAATATATTAACTAAACATGCCAATAAAGATATGCTAGCGGTGG
ACGACAGTGGAATGAGAGTTCAAATCCCGAGCATTGAGTAGTGGGATTCGCCTCTTAAGAAATAG
AATGTAGTTTAATGAATGCCCATATTTATTAGAATATATAAAGAAGGGTAGGGAGAAGTTCATGC
AACAAGCCTGCGAGCCACGTAATCAAATGAAAAAAGACTAATCTAGCCAGCCAGGCTTTAATGAG
CGATGCTCAAAGTATCCTATTCTTTATACTTTTTCCCATTCAAGTAAAGCTTCCCCGGAAGCACA
TTCAAGAGTCAGGGATGTTTGAAGCTAGCTCAGAAGAAAAGTCTCCGTATCCTAGCTCTCGAATA
TCCCCCCCCAGCCTTCGGAACTGTTTACAAGCCAGTGCATTAAAGTCAGTGAGAGGAAGTAGATG
AAGAAAGAGCCGGCTCTAGATAAGAGGGGTTGCACCTCAGACTTT
Found at i:387531 original size:19 final size:19
Alignment explanation
Indices: 387494--387532 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
387484 ACGTAGGCAC
387494 GAGAGATACACTACGCCAT
1 GAGAGATACACTACGCCAT
387513 GAGAGATACACTACGCCAT
1 GAGAGATACACTACGCCAT
387532 G
1 G
387533 TTACGCTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (19 bp):
GAGAGATACACTACGCCAT
Left flanking sequence: Indices 386994 -- 387493
CAGATCGTCTGCATGTTCTTCCTTCGTCCCACTCCCATTTCTGTCATTCCTTCCCTCTTGGCTAT
TCGTGTTTAGCGCTCGCTCTTGCTTACCGCTTAAGCGAGCGAAGCGATCTGGCTTTCCGCTTGAA
GATGGATTCTCCCGCAGTCGTTGATACTAACTAAGAGGGAACGCCCTGCGAAACAAGAACGGGCA
GCAGCTGGACCTTCTAGCCAATCGACAGAGTTACGGATGCCGGACGATCCAGGGTAAAGCCACTC
ATTTCCCATCAATGCCAGCCAAGCTTTGCCACCTCGAGACTCAGGAGATGAATGCTCAGCCAGGA
ATCCAGTTAAGGAAATATGAAAAAGAAGCAATTTATGCAAGAATGAAGCAAGGCCATGGAAAGTC
CGAAAGTGGCGGAGGAGGGTAAGCCGCTTTGCCGGATAACAGGTAATTCAGCTTGGAATTCAACA
AGCAACGGCTTGAGCGCTAGTGAGAGATACGATACACGTAGGCAC
Right flanking sequence: Indices 387533 -- 388032
TTACGCTCTAAAAAAAGCTATAAAAAAAGCTCCTAAAAAAGAGAACAAAAAGCTTTTATCTAAGC
ATAAACAGTTACTTTCGTTCCAATGATAAAGATAAACTAATGAAAATGAAAAACACATTAATGCA
GTACGGACCGGATCTGGTGACAGGCTAAAGAAAGTAATATCTCCTTCACTTCTTTGCAATGGCTT
TCGTTCGCGCGCACTAGGCTAAAAAGAAGCTCCGGTCCGCTGTCCGGCTCAACACTTCGCATGAT
AATAGGGGATGAACGACTAATGCTTTCTGGTCGACCTCTTATTAAATGCGCAAAGTAAAAGGTAT
TTTTTAGCAATTCAAGTAATTCAGTCCGACGAACCTTATTCTCCAATGAGCTACGATCTTGTAAT
GCCAGCCTGGCGGGTATGATATTCCAATTCCTCCACATACATGCGAATGGTTTATTTCAGACTCT
TCGCTTCAACACACATAGAATGAAGTTGGGAAATAGGAGTTGGGC
Found at i:387569 original size:13 final size:12
Alignment explanation
Indices: 387537--387572 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
387527 GCCATGTTAC
387537 GCTCTAAAAAAA
1 GCTCTAAAAAAA
*
387549 GCTATAAAAAAA
1 GCTCTAAAAAAA
387561 GCTCCTAAAAAA
1 GCT-CTAAAAAA
387573 GAGAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.58, C:0.17, G:0.08, T:0.17
Consensus pattern (12 bp):
GCTCTAAAAAAA
Left flanking sequence: Indices 387037 -- 387536
TCATTCCTTCCCTCTTGGCTATTCGTGTTTAGCGCTCGCTCTTGCTTACCGCTTAAGCGAGCGAA
GCGATCTGGCTTTCCGCTTGAAGATGGATTCTCCCGCAGTCGTTGATACTAACTAAGAGGGAACG
CCCTGCGAAACAAGAACGGGCAGCAGCTGGACCTTCTAGCCAATCGACAGAGTTACGGATGCCGG
ACGATCCAGGGTAAAGCCACTCATTTCCCATCAATGCCAGCCAAGCTTTGCCACCTCGAGACTCA
GGAGATGAATGCTCAGCCAGGAATCCAGTTAAGGAAATATGAAAAAGAAGCAATTTATGCAAGAA
TGAAGCAAGGCCATGGAAAGTCCGAAAGTGGCGGAGGAGGGTAAGCCGCTTTGCCGGATAACAGG
TAATTCAGCTTGGAATTCAACAAGCAACGGCTTGAGCGCTAGTGAGAGATACGATACACGTAGGC
ACGAGAGATACACTACGCCATGAGAGATACACTACGCCATGTTAC
Right flanking sequence: Indices 387573 -- 388072
GAGAACAAAAAGCTTTTATCTAAGCATAAACAGTTACTTTCGTTCCAATGATAAAGATAAACTAA
TGAAAATGAAAAACACATTAATGCAGTACGGACCGGATCTGGTGACAGGCTAAAGAAAGTAATAT
CTCCTTCACTTCTTTGCAATGGCTTTCGTTCGCGCGCACTAGGCTAAAAAGAAGCTCCGGTCCGC
TGTCCGGCTCAACACTTCGCATGATAATAGGGGATGAACGACTAATGCTTTCTGGTCGACCTCTT
ATTAAATGCGCAAAGTAAAAGGTATTTTTTAGCAATTCAAGTAATTCAGTCCGACGAACCTTATT
CTCCAATGAGCTACGATCTTGTAATGCCAGCCTGGCGGGTATGATATTCCAATTCCTCCACATAC
ATGCGAATGGTTTATTTCAGACTCTTCGCTTCAACACACATAGAATGAAGTTGGGAAATAGGAGT
TGGGCAATGAAGGAACATACCAATATGCCCTTTCTTCTTTTCTAA
Found at i:392166 original size:28 final size:28
Alignment explanation
Indices: 392135--392210 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 28
392125 AAGTCACGAA
* *
392135 CGTAGTTACTCACTGGTT-CTACACATGC
1 CGTAGTTACTCACT-CTTACCACACATGC
**
392163 CGTAGTTACTCACTCTTACCGTACATGC
1 CGTAGTTACTCACTCTTACCACACATGC
392191 CGTAGTTACTCACTCTTACC
1 CGTAGTTACTCACTCTTACC
392211 GTTCGCTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 2 0.05
28 41 0.95
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.33
Consensus pattern (28 bp):
CGTAGTTACTCACTCTTACCACACATGC
Left flanking sequence: Indices 391635 -- 392134
GTCTTTGACAAACGCTTTCTTTTTTCTTGAACTGAGCTAACAGCGGAAGAAAGATGAAAAGCAAT
TTCCTATCACTTCAGTATACTTACTGACCATAAATAGGAAGAAGAAAATACATGGAATTTTGATC
TTTGGCTCTTCGGGTTACCTGCTCTACCACCCCGCAAGGCACTACTGTAGAGCACTTTTGTCCTG
AGCTTTCTCAATCCATAAATGTCAAAGCAAAGATCAAATATCTTCCAAGAGAAGGAGCAAATCAC
ACTTCATATGCAGTACCGATTCTTAACAGAAGTTGCACTTCGTAGATGAGGATGACTTTGGATCT
GAAGGAATGGCCTACAAGCGCCGCATTCCTGCTTTCCAACTATATAGAATATAACGCCTTTCAAA
CTAGTAGCTTTTTTCCTGATTGAACGATCCCACTCAAACCTTCCCCGCTCTTTATGCTATAGTGG
GTAAGGCTTTATGCTATAGTGGTTACTCGCTTGGAAAGTCACGAA
Right flanking sequence: Indices 392211 -- 392710
GTTCGCTTGGTATTTATCTGGATTTTTGAATGCATGGATCAGCACGTCTCTCCATTCCGGAGACA
GCATTCTGGCATAAAACACACTGAGTAAGGCTGGGATTTGCCTCAGTAAGGCAGTTATTTTCCTC
AAGTGCGCTAGAACGTTATAATAAGTCTTTGTGAGCTTGGCTTTGTCGCTAGCATCATCATCTAT
CACAACCTCCTTATTTTTCTTCTTTTTTTGGCGCTTGCCGCTCAGGTAGAACTTCACCTTGCCGC
AAGTTAATCAAGCACGCATCTTTTGAGGGAAGCCTTTATCTTCGGACTCCTCTGGTTACTCCGGG
AAAGAAAGATATTATTCAACGTCACTCCCAGGACCGCGCATTCCTTTCTGTTTTGCTACGATGAA
TTAGGTTCTTGATTCTTTACGGTTTTCGCCTTCCTTCACTACGTCCCACCATTGGGGCAGGGCTT
GCAGTCTATCAAAGAGCTGAAGATGCTCACTCAATAGTACTACCA
Found at i:392211 original size:28 final size:28
Alignment explanation
Indices: 392157--392212 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
392147 CTGGTTCTAC
392157 ACATGCCGTAGTTACTCACTCTTACCGT
1 ACATGCCGTAGTTACTCACTCTTACCGT
392185 ACATGCCGTAGTTACTCACTCTTACCGT
1 ACATGCCGTAGTTACTCACTCTTACCGT
392213 TCGCTTGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.14, T:0.32
Consensus pattern (28 bp):
ACATGCCGTAGTTACTCACTCTTACCGT
Left flanking sequence: Indices 391657 -- 392156
TTTCTTGAACTGAGCTAACAGCGGAAGAAAGATGAAAAGCAATTTCCTATCACTTCAGTATACTT
ACTGACCATAAATAGGAAGAAGAAAATACATGGAATTTTGATCTTTGGCTCTTCGGGTTACCTGC
TCTACCACCCCGCAAGGCACTACTGTAGAGCACTTTTGTCCTGAGCTTTCTCAATCCATAAATGT
CAAAGCAAAGATCAAATATCTTCCAAGAGAAGGAGCAAATCACACTTCATATGCAGTACCGATTC
TTAACAGAAGTTGCACTTCGTAGATGAGGATGACTTTGGATCTGAAGGAATGGCCTACAAGCGCC
GCATTCCTGCTTTCCAACTATATAGAATATAACGCCTTTCAAACTAGTAGCTTTTTTCCTGATTG
AACGATCCCACTCAAACCTTCCCCGCTCTTTATGCTATAGTGGGTAAGGCTTTATGCTATAGTGG
TTACTCGCTTGGAAAGTCACGAACGTAGTTACTCACTGGTTCTAC
Right flanking sequence: Indices 392213 -- 392712
TCGCTTGGTATTTATCTGGATTTTTGAATGCATGGATCAGCACGTCTCTCCATTCCGGAGACAGC
ATTCTGGCATAAAACACACTGAGTAAGGCTGGGATTTGCCTCAGTAAGGCAGTTATTTTCCTCAA
GTGCGCTAGAACGTTATAATAAGTCTTTGTGAGCTTGGCTTTGTCGCTAGCATCATCATCTATCA
CAACCTCCTTATTTTTCTTCTTTTTTTGGCGCTTGCCGCTCAGGTAGAACTTCACCTTGCCGCAA
GTTAATCAAGCACGCATCTTTTGAGGGAAGCCTTTATCTTCGGACTCCTCTGGTTACTCCGGGAA
AGAAAGATATTATTCAACGTCACTCCCAGGACCGCGCATTCCTTTCTGTTTTGCTACGATGAATT
AGGTTCTTGATTCTTTACGGTTTTCGCCTTCCTTCACTACGTCCCACCATTGGGGCAGGGCTTGC
AGTCTATCAAAGAGCTGAAGATGCTCACTCAATAGTACTACCAGT
Found at i:392823 original size:16 final size:17
Alignment explanation
Indices: 392797--392831 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
392787 GGTATTTCAG
*
392797 TATTGTGAAGTCGGAGT
1 TATTGTGAAGTCGCAGT
392814 TATT-TGAAGTCGCAGT
1 TATTGTGAAGTCGCAGT
392830 TA
1 TA
392832 CAGGCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.37
Consensus pattern (17 bp):
TATTGTGAAGTCGCAGT
Left flanking sequence: Indices 392297 -- 392796
TGAGTAAGGCTGGGATTTGCCTCAGTAAGGCAGTTATTTTCCTCAAGTGCGCTAGAACGTTATAA
TAAGTCTTTGTGAGCTTGGCTTTGTCGCTAGCATCATCATCTATCACAACCTCCTTATTTTTCTT
CTTTTTTTGGCGCTTGCCGCTCAGGTAGAACTTCACCTTGCCGCAAGTTAATCAAGCACGCATCT
TTTGAGGGAAGCCTTTATCTTCGGACTCCTCTGGTTACTCCGGGAAAGAAAGATATTATTCAACG
TCACTCCCAGGACCGCGCATTCCTTTCTGTTTTGCTACGATGAATTAGGTTCTTGATTCTTTACG
GTTTTCGCCTTCCTTCACTACGTCCCACCATTGGGGCAGGGCTTGCAGTCTATCAAAGAGCTGAA
GATGCTCACTCAATAGTACTACCAGTGTGGATTGGGTCCTTGTAAGCGGCAGGCTTGGCAGGCAA
AATGCAGCATTGATGAACAGGAAGAAGTAAGCCAGGGTATTTCAG
Right flanking sequence: Indices 392832 -- 393331
CAGGCTTCTTGGAGTTAGGGGATCGTTCCTTGGGTTCTGAGCTCTGCAGCTGGGAATTCTCTAAG
TAACTCCAAAATGCTAGGGAATCTCTTGGTCTATGATTCTACGCCTAGAGACTTGATCGAAGGAT
GCCGATCCATCGGTCTTTATGCCAATCAATGAATGTGTGCCAGTTACGAAATCAGTATGATGTGT
TGCAGACTAAAGTTATCCCAGAAAAGCTTACTCATATATATGTAGACCTTATATATAAATCCTGT
CCTTTGGGGAGTAAGTCAAAAAAGCCCTTTCTTTCTACTGTCGGGTGAATCACCAACAAACCTAG
CCAGCCGTACTCTGAAATAATTTCCACTCGATTTTGTTGGAAAGTGAAAAGGGTAAGACCAAGTA
GGCTCGTTCACTCGCTGGTTAAGAAAAACCTATATTAGCAGCTACCAAACTTGTTATAATAATGC
ATTACCAAGTCTAATAACTACAATCCTGGACACTGGTTCATGTCC
Found at i:418774 original size:22 final size:22
Alignment explanation
Indices: 418731--418775 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
418721 CTGGACCCAT
*
418731 TGAAACTTTGGATGGTCGAGAC
1 TGAAACTTTGGATGGCCGAGAC
*
418753 TGAAAC-TTGTGATGGCCTAGAC
1 TGAAACTTTG-GATGGCCGAGAC
418775 T
1 T
418776 TTGACTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (22 bp):
TGAAACTTTGGATGGCCGAGAC
Left flanking sequence: Indices 418231 -- 418730
GCCAACAACATAGATTTGCCACGGACAAGCATCTTGCCACCTTATTTGGAATGCCCCTTTTTTGA
TTCAATTGTGTACTCGTTCCTGGTCAATTTTTTGTGCCATTTGAGAATGCCTTGAGAAGACTGTG
TGAAAGAGAGCACGAAGCCGACCATGAATCCAAGTAAAAAAAACCCAATTTGCGTGATCATCTCC
CGATTTCAAAGCACTTTTTTTATGCACCCCACTCTTCTCTTTTTTTCCTATCCGCTGGTCTTGCC
TTTCTGAGAAATGACACTCTCTTTTATAAGAGCGCTCTTTTTTAGTACCTATTAGTAGAAGATGA
GCTGTAGTCATTCTAGCTAGAAAGTCGCATATACGCTTTCAATGTCTACTTCAAAGCCAAGATGC
TTGCTACCATATTTCAAGAAAAGGAATACGCGAACTACTTCACAGAAATACGTAAATTGCGCTGC
TTTTGCCTACTTAACAATCAATATTTTCTTTTTTACTGGACCCAT
Right flanking sequence: Indices 418776 -- 419275
TTGACTTTTGACCCACTGCCTTTACACTTTTCAGGGCCCCCCTTCGACAGCACGAGTAGATAGCA
TAGGCAAGGTCTCAGAGCCCCGCCTCATTGATAAGGAAGGAGTAAAGCTAGTTGGTAAAGTTCAG
AGAGCTTTCTTTCGTCTTTACCGAAGAAGCTTATACCGGATTTTGCCAATTTTTTAGGGTGTTTG
TTCTGGTCTTGCTTAGATTTATCTTGAGTAGTCTTTTTGCGCTCTTGCTTACTTTGTTCTTGAGT
AGGCTGTATTTGATCTTGTTTTCTCGAAAAGTCAGAATTGCTTCACCCGTGGCTTGAACACTGAG
AAAAATGGCGGCGGGCCGTGGTGGTCGACCTGTAGAAAAAGCTTTAGGCTGATAAGCAGCGAGGA
TTACCAAAGGTTGTTGGTAGAACGCTTTTGGGCATGAGTCAAGCCGGTAGAATGGGTCTGGACTC
ATTTACACATACATATTCCTAGCTTTTCCTTAGCTTCGTAAGTAA
Found at i:429710 original size:18 final size:18
Alignment explanation
Indices: 429687--429723 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
429677 TTACGAGCTT
429687 TAGTAGTTCATTCACCCG
1 TAGTAGTTCATTCACCCG
429705 TAGTAGTTCATTCACCCG
1 TAGTAGTTCATTCACCCG
429723 T
1 T
429724 GGATTCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (18 bp):
TAGTAGTTCATTCACCCG
Left flanking sequence: Indices 429187 -- 429686
GGAATCGTGGGAGCAAGAAGGAAAACATCCAACCTTACGGAGAAAGAGGTGGACTGCCGAAAAAG
AGGCATCAGAGGTAGACAGACAAACCACTTTCAGAATCTCAAGCATTCTCGACCACATGCGGGCC
ATCTGAGAAGGAAGAAGACACATCTCTTAATAATAAGTAAGTGCGGCGAGGTCTATTTAACCATA
CCTTTTAGACATACAGGTCCCTTTGTGTCTTTTCCAATTCAACAGTGTATGATTTGAAACTAGAA
TATAAGGATGTGTTCCAAGCTGCACTACATGGAAGACATGTTCTGGGCCAGCATTTCTTCCAGTT
TTCGGGAAAGAATGCGCCGTAGTGACATTTCCTTTTATGAGTGAATTACCTAGCATTGAATGAGA
ATGACTTGAGAGAATTGCCACTCAAATACCTGACAATAGAGGCTGGCTTTCTTTTACTTACATAT
TCGCCTATGTGTGAAGTGAGTGTGGACTTTTTCAATTACGAGCTT
Right flanking sequence: Indices 429724 -- 430223
GGATTCAAATTTCCCCTCGCACTTTCCTGCTTGAAAGTGAGGAACTAGTATTATAGGCAATCTGG
AATACAAAATAGCTTCAGCAGTTACTGGGGGGGTAGTGCCCCTTTGGGTAACTTGCGCTTCGGGC
AGTGGTTTACCCGACAATTGAAGGTGGATCTTGGGGTCCGCTACTTGGTCTTTAATGGGGCTCAC
CGCTATATTGAAATACATTTTTTCACCCCTTCCGTTCACCTTTCTCTACTTCCGTTTCTCTCTTG
CTTTGACTGACTCGAGGGGCCAAGCCACACGCTTCACTCGAAGTAAGTAAAGAAAAGCTAGCGAG
GAATTGAACTTAAAAGGCTGCGGTCAAAAACCTGTACAGCGGGCGCAGGACCTTTCTTAACCGCA
AGTGCATTCGCTAGTTGAGGATGGACTGCTCGCACCCTCGATCCCCCCAAAGTGTTTATCGCTTC
TTTACTTTTTAGCGACAAACGGTAGACTTTCTTATCTATGTTGCC
Found at i:450304 original size:23 final size:23
Alignment explanation
Indices: 450274--450322 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
450264 TAGAGGAGAA
450274 AGATTTGCCTCTTACTTCATTAC
1 AGATTTGCCTCTTACTTCATTAC
450297 AGATTTGCCTCTTACTTCATTAC
1 AGATTTGCCTCTTACTTCATTAC
450320 AGA
1 AGA
450323 CTCCTTGCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (23 bp):
AGATTTGCCTCTTACTTCATTAC
Left flanking sequence: Indices 449774 -- 450273
AGGCCTGGAGCTCGGCCAAAAATTCGGCTTAAGATCCAGAGGGGTACTATGGGACAAGCATTATG
AAGCACTGCATTGACCACGCTAAGAAATGTCACCAATGCCAAATACTTGGTGATTTCATACATCA
AGATCCTCCCAACTGGGCACAACCTGGTCACTTTGCCACTCTTGAAGAAAGGCACTTGAATAGGC
AGGAACATTATCATATCTTCGACTCCTAGGATTCCAATTATTGGACGGATTACCAATACTCTTTC
CACTTTTCTTAGCAGTTTTCCTTTTACAAGTCGGGTTTTCTCTTACCTATCTCGGGCTTTCTCTC
ATCTAAAAGATGGAAGGATGATAAAAAAGTAATGCAACATAGCTGTAGGGCACCTTCTTAAAGTC
ATGACTACTCGGACTAGCAAGACGGAATATGCGCTGCAGTACAAAAGCAAAAAACTGACTAGAAA
GAGCGAAGAGTCGGCAATGGGCAGAGTGGGTGTCATAGAGGAGAA
Right flanking sequence: Indices 450323 -- 450822
CTCCTTGCCCCATCCTCCCGAACTCTTGAAATTGCATCCAAATTGTCAACCTCTTCCTCTCAAAG
CTTTCTCCCTTAAACAAACTGAATAAGATAAAAGAAGATAGACCGCCCCCGCTCAAATACCGCAA
GCAGCTTTAGGGCAGATCCGCGTTAGAGCTCGGAAAACCGCATTAACGTTCCTAAGCTTATGATA
ATGAAGCTCCTTCTGATGAAAGATTATGGCGTGTGCCGACGGAGTGTGAAAGAATGGATAGCTAC
TAAGATGTATTCATGTCAAATTGTGGCCATCCTCTGAGATAAAGGCAATATACTGCAAAGGGCCA
AGGTAGGGTTCTGCGTCGGCGACACGTAGAGAAAATTCGCATGCACTTGGAAGAAAATGCTTGTG
GAATTTGGTAACATCTGTCTCAGTACCGCCTGGTACTCCGTATGATGGCGGGAGACTACACTTAT
CAGCTGAGACCTGTTTACTGAGGGAGCTTACCTAGTAGTTACTGA
Found at i:456776 original size:32 final size:31
Alignment explanation
Indices: 456738--456807 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 31
456728 CTAATCAAAC
* *
456738 TAGAATAGAAGCCTTTCTTTCCTCAGAGAAAG
1 TAGAATAGAAGCCTTTCTTTCATAAGA-AAAG
456770 TAGAATAGAAGCCTTTCTTTCATAAGAAAAG
1 TAGAATAGAAGCCTTTCTTTCATAAGAAAAG
*
456801 TATAATA
1 TAGAATA
456808 ATGCTAGTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
31 10 0.29
32 25 0.71
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (31 bp):
TAGAATAGAAGCCTTTCTTTCATAAGAAAAG
Left flanking sequence: Indices 456238 -- 456737
ACTAGAATATAAAAGGAATCACAGCCCAATGAAATAGAGTGGGACCCATAGCCAGCTTATCCCAA
GGCAATGAGCGCTTTCTCAGAAAGAAATCAGAAGCAATGGCGTGTGCTAGTGTGAAAGAAATCTA
TATCTTAGATTTGCATATGGGAACATCAAAATATTACTCTGGGATAATCTAGTTTAGCAAGCAAA
AGGTCTATCGTATACAGTCTCCTAGCAAGCCATCCATTGCTCTCATCAAAGGGCTAATCAGAAGA
ATGAAGATGCAGGGAAGTAAGCAGACAATTTCTTTCTTAAATAGAGGATTATCCTTCCTTCTAGT
CTAGCTTCATAACCAAAGCTGGGTCTATGCCCCTCCTTATGAAGAACTCGAATATGTATATGCTA
GAAGATGCTAGAAATCCATGCTCTATTTGTGTATAATATTGAGATGCTAGAAAATGCTATAATTC
TATGCTCTAAGAAAGCTCTAAGAAAGAAGCCTTTCCTAATCAAAC
Right flanking sequence: Indices 456808 -- 457307
ATGCTAGTCTAATAAAGAAATAGAATAATGAGAGTCTTAGAAGTCTTCTTATCTCTATCTTATCT
CTATCTTCAGGCTACTAACTAAGATGCTGTGCCTCATTCTCATAGTCATGCGTCTTCATGTTCAT
CTTCAATGTAAGTATGCTTCATGAACTTATGTCATCTCTTATATGAGATATGATGATACTTATGT
ATGAAATCTCTGATAAGATATGATGATAGCAATAGAATAGTGTCAATCCAATAGTGGAAAAGAGA
ACTAATGCCTTATGCTAGAACCAATGTCTTATGATTGATGGTGAGGATTGTTATTAAGATCTCTC
TTCTAATAAGCAATGTGTCATCTCTTGTGATTAAGATCGCTCTTTTCTGGGTAATATCGAATCTG
ATATATTATATACTAGTGATGCTAGCATTCAATGTGTATGAGTGTAGGATACTTTGATTGACTTG
ATTAATGTGAAGGAAGCCCCTCCCTGTTTCAAAGGAAGGAATTTT
Found at i:456870 original size:11 final size:11
Alignment explanation
Indices: 456854--456879 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
456844 TTAGAAGTCT
456854 TCTTATCTCTA
1 TCTTATCTCTA
456865 TCTTATCTCTA
1 TCTTATCTCTA
456876 TCTT
1 TCTT
456880 CAGGCTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (11 bp):
TCTTATCTCTA
Left flanking sequence: Indices 456354 -- 456853
GTGAAAGAAATCTATATCTTAGATTTGCATATGGGAACATCAAAATATTACTCTGGGATAATCTA
GTTTAGCAAGCAAAAGGTCTATCGTATACAGTCTCCTAGCAAGCCATCCATTGCTCTCATCAAAG
GGCTAATCAGAAGAATGAAGATGCAGGGAAGTAAGCAGACAATTTCTTTCTTAAATAGAGGATTA
TCCTTCCTTCTAGTCTAGCTTCATAACCAAAGCTGGGTCTATGCCCCTCCTTATGAAGAACTCGA
ATATGTATATGCTAGAAGATGCTAGAAATCCATGCTCTATTTGTGTATAATATTGAGATGCTAGA
AAATGCTATAATTCTATGCTCTAAGAAAGCTCTAAGAAAGAAGCCTTTCCTAATCAAACTAGAAT
AGAAGCCTTTCTTTCCTCAGAGAAAGTAGAATAGAAGCCTTTCTTTCATAAGAAAAGTATAATAA
TGCTAGTCTAATAAAGAAATAGAATAATGAGAGTCTTAGAAGTCT
Right flanking sequence: Indices 456880 -- 457379
CAGGCTACTAACTAAGATGCTGTGCCTCATTCTCATAGTCATGCGTCTTCATGTTCATCTTCAAT
GTAAGTATGCTTCATGAACTTATGTCATCTCTTATATGAGATATGATGATACTTATGTATGAAAT
CTCTGATAAGATATGATGATAGCAATAGAATAGTGTCAATCCAATAGTGGAAAAGAGAACTAATG
CCTTATGCTAGAACCAATGTCTTATGATTGATGGTGAGGATTGTTATTAAGATCTCTCTTCTAAT
AAGCAATGTGTCATCTCTTGTGATTAAGATCGCTCTTTTCTGGGTAATATCGAATCTGATATATT
ATATACTAGTGATGCTAGCATTCAATGTGTATGAGTGTAGGATACTTTGATTGACTTGATTAATG
TGAAGGAAGCCCCTCCCTGTTTCAAAGGAAGGAATTTTGTAAGCGAAGCAAGAATCTCATTTCCT
ATATCATCAACCAATAAAGAGATCATAATGGTGGTAGTGGATCTA
Found at i:496415 original size:29 final size:29
Alignment explanation
Indices: 496356--496416 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
496346 TTGAACTACT
* **
496356 TAGTGTATGTATAATGCTTACTTTGCCTA
1 TAGTGTATATATAATGCTTACTTCCCCTA
496385 TAGTGTATATATAATGCTTAC-TCCCCTTA
1 TAGTGTATATATAATGCTTACTTCCCC-TA
496414 TAG
1 TAG
496417 ATAGTGTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (29 bp):
TAGTGTATATATAATGCTTACTTCCCCTA
Left flanking sequence: Indices 495856 -- 496355
GGCGGAATAAAAAAATGTACCAATTCTTTTTTTCTGGGCCCCAGTGCCGAATTTAGTTCCTTTCA
AATAAATAAAGAACTTGGTCCAAACAACTTCCCAGTTTACGAATCAAAATCTACTAGTTTACTAA
TATGAAGCCTGCTTTTCCAACAAACAATACCCAAGATAACAAGATAATAAATCCTTGCGCGCCAC
TCGGGAAACAAGATCAAACACTGATGTTCAAATCAGCTTCTCCAAAAGCGCTTTTTTGACTTTCA
ATTGTATGCATCAAAAAGGCTTTTCGTTCGCAACATTAGTAGTTACTCACTGGGTCAAGAAATTC
CATGTGTTTCAGTTAATAGCGAACACATTTCGATGCTCACGAGTCGTAGTAGGAGATGAAGAAAC
CACAGAGGGCAATGTTTATCAGATACTATTTGTTCTGGGGTTATTGGTCCGTTCCAATTCTTTCT
ACTGCTTACGCTTTACCCTAGACGGTACTTGTAAGTTGAACTACT
Right flanking sequence: Indices 496417 -- 496916
ATAGTGTATAATGCGGACTTACCTTATAGTAAGGCTTTCCGGTGCGGTAGTAGCTCTTTACGTAC
GTAGTTTCCGAATAGAACGACTATATCCGAATAGAAGGACTATCAATAACAGGTGTAGCCCATTC
CGAATAGAACGACTGACTATCAATAAAAGGTTTACCACATTGACAATGGAAATTGAGAATGAGCA
CATTAACGTACTACTTCAATTACAGAGATAAGTTCTTTTTTTGTAGGTAAAGATAAGTTCTTTCT
TTGTAGGTCAATATCCTCCTCCGTTTACTACATAAGCACCATGGCCAAAGAATAAAGTGCTGACA
CAATGCAAATCCCATACTGGCGTAAAGCAGCAACAAAAGAAAGGTTTATTTACGCTGGCAAATAG
AGATCTTAGTGCAAGCCCTGGATCAATGCTTCCCCGAGCATTCTTATGGACTGGTTTTTCAAGTG
AGTCAAGTGTAGCACCCGATAAGTCACTATGTCATTTATGCGAGC
Found at i:496512 original size:19 final size:19
Alignment explanation
Indices: 496488--496524 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
496478 GTACGTAGTT
496488 TCCGAATAGAACGACTATA
1 TCCGAATAGAACGACTATA
*
496507 TCCGAATAGAAGGACTAT
1 TCCGAATAGAACGACTAT
496525 CAATAACAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (19 bp):
TCCGAATAGAACGACTATA
Left flanking sequence: Indices 495988 -- 496487
TGAAGCCTGCTTTTCCAACAAACAATACCCAAGATAACAAGATAATAAATCCTTGCGCGCCACTC
GGGAAACAAGATCAAACACTGATGTTCAAATCAGCTTCTCCAAAAGCGCTTTTTTGACTTTCAAT
TGTATGCATCAAAAAGGCTTTTCGTTCGCAACATTAGTAGTTACTCACTGGGTCAAGAAATTCCA
TGTGTTTCAGTTAATAGCGAACACATTTCGATGCTCACGAGTCGTAGTAGGAGATGAAGAAACCA
CAGAGGGCAATGTTTATCAGATACTATTTGTTCTGGGGTTATTGGTCCGTTCCAATTCTTTCTAC
TGCTTACGCTTTACCCTAGACGGTACTTGTAAGTTGAACTACTTAGTGTATGTATAATGCTTACT
TTGCCTATAGTGTATATATAATGCTTACTCCCCTTATAGATAGTGTATAATGCGGACTTACCTTA
TAGTAAGGCTTTCCGGTGCGGTAGTAGCTCTTTACGTACGTAGTT
Right flanking sequence: Indices 496525 -- 497024
CAATAACAGGTGTAGCCCATTCCGAATAGAACGACTGACTATCAATAAAAGGTTTACCACATTGA
CAATGGAAATTGAGAATGAGCACATTAACGTACTACTTCAATTACAGAGATAAGTTCTTTTTTTG
TAGGTAAAGATAAGTTCTTTCTTTGTAGGTCAATATCCTCCTCCGTTTACTACATAAGCACCATG
GCCAAAGAATAAAGTGCTGACACAATGCAAATCCCATACTGGCGTAAAGCAGCAACAAAAGAAAG
GTTTATTTACGCTGGCAAATAGAGATCTTAGTGCAAGCCCTGGATCAATGCTTCCCCGAGCATTC
TTATGGACTGGTTTTTCAAGTGAGTCAAGTGTAGCACCCGATAAGTCACTATGTCATTTATGCGA
GCTGCAACGACGGGGCCCGCCTTGTAAAGAGAGGTTCGATCAGATATAACGAACGAAATGCTTCG
ATCGGCTTTCATTAACCCATACATCCCCTACGTTCTTTCTTGTCT
Found at i:496671 original size:25 final size:25
Alignment explanation
Indices: 496637--496684 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
496627 TCAATTACAG
*
496637 AGATAAGTTCTTTTTTTGTAGGTAA
1 AGATAAGTTCTTTCTTTGTAGGTAA
496662 AGATAAGTTCTTTCTTTGTAGGT
1 AGATAAGTTCTTTCTTTGTAGGT
496685 CAATATCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.48
Consensus pattern (25 bp):
AGATAAGTTCTTTCTTTGTAGGTAA
Left flanking sequence: Indices 496137 -- 496636
TTTCGTTCGCAACATTAGTAGTTACTCACTGGGTCAAGAAATTCCATGTGTTTCAGTTAATAGCG
AACACATTTCGATGCTCACGAGTCGTAGTAGGAGATGAAGAAACCACAGAGGGCAATGTTTATCA
GATACTATTTGTTCTGGGGTTATTGGTCCGTTCCAATTCTTTCTACTGCTTACGCTTTACCCTAG
ACGGTACTTGTAAGTTGAACTACTTAGTGTATGTATAATGCTTACTTTGCCTATAGTGTATATAT
AATGCTTACTCCCCTTATAGATAGTGTATAATGCGGACTTACCTTATAGTAAGGCTTTCCGGTGC
GGTAGTAGCTCTTTACGTACGTAGTTTCCGAATAGAACGACTATATCCGAATAGAAGGACTATCA
ATAACAGGTGTAGCCCATTCCGAATAGAACGACTGACTATCAATAAAAGGTTTACCACATTGACA
ATGGAAATTGAGAATGAGCACATTAACGTACTACTTCAATTACAG
Right flanking sequence: Indices 496685 -- 497184
CAATATCCTCCTCCGTTTACTACATAAGCACCATGGCCAAAGAATAAAGTGCTGACACAATGCAA
ATCCCATACTGGCGTAAAGCAGCAACAAAAGAAAGGTTTATTTACGCTGGCAAATAGAGATCTTA
GTGCAAGCCCTGGATCAATGCTTCCCCGAGCATTCTTATGGACTGGTTTTTCAAGTGAGTCAAGT
GTAGCACCCGATAAGTCACTATGTCATTTATGCGAGCTGCAACGACGGGGCCCGCCTTGTAAAGA
GAGGTTCGATCAGATATAACGAACGAAATGCTTCGATCGGCTTTCATTAACCCATACATCCCCTA
CGTTCTTTCTTGTCTTGTGTTAGCCTTCCTAGCTGCGGGTGTGTCTTTCTTGTCTTGTGTTAGCC
TTCCCGTCCCACACCCATGCCTTATTCCTTTAGTATATAGAACCAGAGACGGAGAAGTGGTCAAC
CGATAAAATACTTGGGGGGGAGTTCATCTATACTATATACCGGTT
Found at i:500760 original size:17 final size:17
Alignment explanation
Indices: 500738--500778 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
500728 TTTACTTTTG
500738 AGTAGGTTAGACAGTAA
1 AGTAGGTTAGACAGTAA
* * *
500755 AGTAGGATAGAGAGTAG
1 AGTAGGTTAGACAGTAA
500772 AGTAGGT
1 AGTAGGT
500779 AACCTCCAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.37, T:0.22
Consensus pattern (17 bp):
AGTAGGTTAGACAGTAA
Left flanking sequence: Indices 500238 -- 500737
AGAAGCTCTACTCAAACTGCTTTCGTGGGTAAAGACCAATTTCAAACAGGTATGGGTAGGTAATT
GCCAAACCCCTCTGACTTTGCACTATCAAGGTATCTGGGTCTCTATCATTGAAAGTACCTTTAGG
TGTGGATGAGGACGAAGGTGCCGAGCTTACTGATCCTTTCCTGTACTTGCATGTGGGTTTGGTAT
AACCCGCAAAAGATCTTACACAGGAAAAAGGAGATGGGTTCCAGTTTCTTACCTATGTTTATTAG
GTACAAGGAGTTTAGGTTAGGAGGTTAGGTCAGTTTCTTAGGTTAGGGGAACAGGTTGACTAGGT
TAGGGGAACGGGTTTAGGACAATAGAATGGGCGGAGCTATGATGCCACGGTTTCTGTTATACTAA
CACAATCAGTTCTATTACCAGCAGTACCAGATCAGTATCCGAGAGCAGAGCTTAATAAGAGGAGA
TCAGAGCTATTAACTTAATAATAGGTGTTCCGCTTTTTACTTTTG
Right flanking sequence: Indices 500779 -- 501278
AACCTCCAGCCTGTCTGTGATGGACAAAGTAGTCTATGTCCGTCCCTAGTGAGAAACTCTTCACC
AGCCCACGGAGTTTCACTCGCTACTGGAAAGACGGTATTCGTCCTCTCTCGTAGAAGCATAGAAT
TCATGTTCTATGGCGGAATCACTAGTTCATTTTTTGAATCTCTATTATCTTTTGGCTTCGTTGTT
TGGTTGTTTACTATCCCCTTCTTGCTGGTCTCTTTCCTTGTATTCAAGGAGTGGGTATTGCCTAA
AAGGTGATCTTTCATGGAGTTTTAGGAAGCAGGGAACCGATGCGACGCGCTTCTTTTTACCCGAC
CTTCTTACTTAACTTTATTTTGTTACCTTAGATTTTCTTCTTGCTTGGCCCAAACTCAATAGTTG
CTGATGTGGACTTCGCGCCCTAGGTTCTTCTGAGCCGAAGGCCAATGAGATTGTGACACGGATCG
TCCCAAATGATCAGATTGTTGAGGAATAGTGGATTGAAGTTCAGT
Found at i:539831 original size:16 final size:16
Alignment explanation
Indices: 539810--539843 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
539800 GGGCGGATAA
539810 ATAAGTCAGTCAATAG
1 ATAAGTCAGTCAATAG
539826 ATAAGTCAGTCAATAG
1 ATAAGTCAGTCAATAG
539842 AT
1 AT
539844 GCAAGAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (16 bp):
ATAAGTCAGTCAATAG
Left flanking sequence: Indices 539310 -- 539809
GAATTCATATCTTTCTTATCCGCTGCTATCTCTATTCGATAAATGCCTTTCTGTTGTTTGGTAGT
CGTATTTCTTCAAGTGCTCTCTTTCATATCTCTTTTCCATCAATACGTCTCTCTCTTTTCTTTTC
TCATTCCTTTTTACATTCTTGAGAGTGAGTGTAAATGAAAAGAAAGAAGAATAGTTCTTGTCTTA
AGAGCTCGAGTGGTTGGTTTCCCTAGGAAAATAGTTCCTCCTTGTCTGATGCCCGGTCGTAAGAG
TAACAGCAGTGATATGAGTACGGGGTTGGATACAAACACACGGGCATATGCGCATTCATGTCAAG
CTTTCTGCGGGATAAGAGATTGCTAGCTAGCAAGTATATAAATAGGAAGCAGTAGTAAGTGTCTT
TCTTTTTAATGCGTAAGCGAGGTAGTAGCAAGATAGGCATCTGTGAATAGTTTCAAAAGCACATG
ATAGGTAGAAAAGAAAGAAGGCATATAGCAAGGGGGGGCGGATAA
Right flanking sequence: Indices 539844 -- 540343
GCAAGAACCTCCTACTTTGAAGATTAATAGAGAGCTTGGTTGATACGGGATAGCCGGCATATGAT
TAACTAGAAGTAAGTCACTAGGCTTGAGCGCTACTAGGAGTTTCTTTTGTAGTTTCAATAACCAA
GGCATGCTCCTTATTTGGTAGGTAGGTCAGCATAGGTGGTAGTAGGTAAGCATAGGTCTTCCTAC
ATAGGTCACAGGAGTAGGACAATTGCCGAAATAGAGTATTGCCGAGTATTTGATCTACCCTCCCT
TCCTTTACTACTTGGGTTCCTACTGATCTTGCCTTTCCTACTTAGTAGATTTCTTCCTATACACC
ATATTCCTTTTCCCCTTGTTATGAAACCTCCGCTTTAACTAGAGAGAAGTTACGCCTTTTGGGAG
ATACACGTAGTCACTAACTTGTTGTCCTCCTTTCCTACGGTACTAGTTTCAAATCACAGGTGTAG
GACTATCTGTCTTGAAAAGAGAAATACGTTCCTTATATACTACAT
Found at i:540020 original size:20 final size:21
Alignment explanation
Indices: 539989--540030 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
539979 GCTCCTTATT
*
539989 TGGTAGGTAGGTCAGCATAGG
1 TGGTAGGTAGGTAAGCATAGG
540010 TGGTA-GTAGGTAAGCATAGG
1 TGGTAGGTAGGTAAGCATAGG
540030 T
1 T
540031 CTTCCTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.26, C:0.07, G:0.40, T:0.26
Consensus pattern (21 bp):
TGGTAGGTAGGTAAGCATAGG
Left flanking sequence: Indices 539489 -- 539988
AATAGTTCTTGTCTTAAGAGCTCGAGTGGTTGGTTTCCCTAGGAAAATAGTTCCTCCTTGTCTGA
TGCCCGGTCGTAAGAGTAACAGCAGTGATATGAGTACGGGGTTGGATACAAACACACGGGCATAT
GCGCATTCATGTCAAGCTTTCTGCGGGATAAGAGATTGCTAGCTAGCAAGTATATAAATAGGAAG
CAGTAGTAAGTGTCTTTCTTTTTAATGCGTAAGCGAGGTAGTAGCAAGATAGGCATCTGTGAATA
GTTTCAAAAGCACATGATAGGTAGAAAAGAAAGAAGGCATATAGCAAGGGGGGGCGGATAAATAA
GTCAGTCAATAGATAAGTCAGTCAATAGATGCAAGAACCTCCTACTTTGAAGATTAATAGAGAGC
TTGGTTGATACGGGATAGCCGGCATATGATTAACTAGAAGTAAGTCACTAGGCTTGAGCGCTACT
AGGAGTTTCTTTTGTAGTTTCAATAACCAAGGCATGCTCCTTATT
Right flanking sequence: Indices 540031 -- 540530
CTTCCTACATAGGTCACAGGAGTAGGACAATTGCCGAAATAGAGTATTGCCGAGTATTTGATCTA
CCCTCCCTTCCTTTACTACTTGGGTTCCTACTGATCTTGCCTTTCCTACTTAGTAGATTTCTTCC
TATACACCATATTCCTTTTCCCCTTGTTATGAAACCTCCGCTTTAACTAGAGAGAAGTTACGCCT
TTTGGGAGATACACGTAGTCACTAACTTGTTGTCCTCCTTTCCTACGGTACTAGTTTCAAATCAC
AGGTGTAGGACTATCTGTCTTGAAAAGAGAAATACGTTCCTTATATACTACATTAGTTGATTCTT
AAACTAGTGATAGATAAACTCCTCTGTGTGGCCCACAACTCAAGTAATTAAAAAAGTGCATCTGT
TTTATTGCAAAGGATTTCGTACTTCCCGTCAGCACGAACACTTGTCTAAGGAACAGATTGAGCGA
ATGCAAGCAAACCTCTTAGGGCTCCACACTAAACGAGAAACTACT
Found at i:542862 original size:26 final size:26
Alignment explanation
Indices: 542833--542889 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
542823 CTGCGCGGGA
542833 CCTGTAACAATCCACTTCTAGT-TGAG
1 CCTGTAACAATCCACTTCTAGTAT-AG
542859 CCTGTAACAATCCACTTCTAGTATAG
1 CCTGTAACAATCCACTTCTAGTATAG
542885 CCTGT
1 CCTGT
542890 GGTTTCTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 29 0.97
27 1 0.03
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (26 bp):
CCTGTAACAATCCACTTCTAGTATAG
Left flanking sequence: Indices 542333 -- 542832
TCGTTCAGAATAATATTTTTAGTTAATAACTAATGGCCGGCCGAGTTTAGAAAGAATCCGCTCTC
CTTTCTTTATAGTGGAGGTATAGTTTAGTTATCGGTCCATATTGGATATTCGCTGGCTCACCTCA
TCCAACATCCATTTCAGAGGTACGTGTAGAACGCCTCGTGGGATTTCTTGAAAAATGCTCTGATA
AACCTACAACCGGGTCTTCTCCTTAATACCTCTCCACTCTCGAGTCCTTTGCCTGCAGGCGAATC
CTCAGATCAAAAAAACCATCAGAATCCCTCATTTTCCTATTCTCCCTTACCCGTTACATATTGAA
TACGGCACTCGCTTCCCCACTTTCCTGACCTGCCATAAAGGTCAAGGCACTTTTGACGTGTATCT
AATTAGAGTGGGCTAATGTTGGTCAGCAGCCCTTTCCTTTTGACTCATAGGCCCAAGACAGACCT
CCACCTGTCTCATTTGCAATCAGGAAGGGCACTCGCTGCGCGGGA
Right flanking sequence: Indices 542890 -- 543389
GGTTTCTGGTTGTCTACTTCCTACATCCAAAGCTTCGAGAAATTATATAGTTCCTCCAAAAATAG
CGGAACGGAAGCCATGCAATACACTTCGCAATGTCTAGGTGGAATCGCCTATTTAAGGTTTAAGT
GAGTCTTATTTAGCTTAGTAAAGCGCTTCAGTTCTTGAGCATATATCAGTACTTGCCAAGCACAC
TTTCTCATAGAATAGAAAAAGCCCAGGGAGTCCTGAGAGAAAGAGGTATAGGCAGCGTAGGCTAT
CCCTAAACTTTCACTATTGAATGAAGGGATAAGAAAGCAGGAAGACAGGCAGAGACAAGGCTTCC
ACAACAAGACAGTTGTAAGTGCTCTTAACAGGCTTTCCTTTGTCGAACAACCTTTCCTCCTGAAT
TTTCCTGTGCTAACAGCCTTACTATTACGAAAGTAGAAAAGTGAACAAAGAGTCGACGGGAAAAG
GGTAAACGTGAGGTTTGGTATCTCCAAAGCTACCCACTCATAAAT
Found at i:580007 original size:20 final size:20
Alignment explanation
Indices: 579982--580021 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
579972 AATCTCTTCT
579982 TTTTGAATGGTTTATTATAA
1 TTTTGAATGGTTTATTATAA
580002 TTTTGAATGGTTTATTATAA
1 TTTTGAATGGTTTATTATAA
580022 GATTTACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (20 bp):
TTTTGAATGGTTTATTATAA
Left flanking sequence: Indices 579482 -- 579981
AAGGTATGCTATTTCTCATTGAATGAATTCTCATGGTTGAGTGTTCTTCGCTCCCGCTTTATCCT
ATGTATTGCTTTTCTCTTAAGCTATTGTTGTTTCTACCAAGAAATGTGTACCACAGCTCAATGTT
TTTTTCTTTCTAAAAAAGAGTATGGCGCTTGCATCCCAAGCCCTTTATGGTACTTTTTCCTGGTA
ATTCCGAGAAAAAGACCTCTTCGACGAGAACAGACCTGTGACCTAGCAATCCATCTACCGATTAA
TAAGCCCGCGCTCTTGGCAAGCTAGCAAATGCTGGCCCTAGTTAACTAAGAGAATTTTGGCAGAT
TTCTTTTCTTCTGTGAAATACGTTCCTGTTCTTTTACTTATCTACGCAAACAAACCTATTCCTTT
TCATCAAAATACTGGATTCGTTCGTCTACTTGATTTATGAGGATAAGGGATGTGCTTTGCCTTCT
GTGCTCGGACCCACATCCGCTTCGTCCTTGGCTCAAATCTCTTCT
Right flanking sequence: Indices 580022 -- 580521
GATTTACAAATAATAGGAATAAATTACCCTATCAAATGTCTTAAAATATTGCATATCTTTTGAAT
GGGAGACATCCGCCCCCTCTAAAGCATGTGGAATTCTTTTCTACGCTCCTTTACTTGCTTAGGAC
CCGGCAAGGGCAGAGGCTCTAAATGACCTTCTCTCCGTAGACCCTTGATTAAGAAATAACGAATT
CCTGGCCAAATGCTCATCGCACTTGATGGTACGTTTTGACTGCCAGTGCTCTGGATCCTGCTTTC
AACTGCTTCTTTTCCTTCCTGTAGCTTTCGAAAACCTTCTTTCGTCACCCACCTGATAGATAAGC
TTGCAACCATTTTTTCGACAGCCACTCTGGAGCTGCCTTCACGGTCCTTGTCACTGCTCACGTTA
TGATACACGCTGCGTTATACGTAATTCCGAGTGGGGGGAGTACATGATCAAGACTATGTAGTCGA
GCGTGGACGCTGGGTCTTTCTTCCCTTTATCGGGCTCCCCTTCTG
Found at i:605240 original size:16 final size:16
Alignment explanation
Indices: 605216--605246 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
605206 TGAGACTCAG
*
605216 GTGGTGTTATACTATA
1 GTGGCGTTATACTATA
605232 GTGGCGTTATACTAT
1 GTGGCGTTATACTAT
605247 TGTTGTTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.42
Consensus pattern (16 bp):
GTGGCGTTATACTATA
Left flanking sequence: Indices 604716 -- 605215
ATCAAGCTGGGAGAGTTGAAGTTAGAGTACGTGGTTAAGGAAGCCATCTTTTTAGCCCCTAAAAG
CTATTGGATAGATGTAGAAGGATCGGATAAAGAGATTTTAGTACACAACGGGGCAGCCAAACTAT
ATGTAACTAGGGAATGGGATATTGCACAATATCGGGATAGAGATCATTACAAAAAAGTGACTGTA
ACCAATCCTTTCACTGTTGATTTCAAAAACATGTCTGTGAGTTATAAGACTGCAGAATCTCTTTG
AACCATGCTTAAATCAATCAAAAGGGAAAATTTCTATGAAAATAAAGGACACTGGGTAGCTACTA
TACCACAAAGAGTTGAAGGAATATCAGACTCTATTCTTAAGCAACTTCTACCTTTATTACCTGTA
GCAAAAAGAAAGTATAACAGCGATGAAGAGGATGTGTTTAGTGGTACTGATAAGGATACCCCAGG
ATACAATAGTGAGTAATAAGCATCTTAATTTACTTTGAGACTCAG
Right flanking sequence: Indices 605247 -- 605746
TGTTGTTTATGAATTAATGCAGGAAACTGCTTAGACAAACTGCTCTTTAAGAGCTTAAAGAGGCT
AAATCTCTGTGCTAGCCTATACCCTAAAGAAAAACATTCGCAATAAGTTCTTAAGTCAGTCTTTA
CAAATGCAAAGCATTCAACTAAACCTCTGGCACTGGACTTAGCCACCCACTACTGAAATAGGAAG
AGCGCCCCTTCCTTAGCCTTTTTTCGAGTGGAAAAGCTACCACTCTAGTCGCAAGCAAAAGTCAG
GTATTTCTTTGAGGGACAACTATCTTGATTGACCTAAATGCCTGAGAATATGTTTCTTCCTGGTC
AACTTGAAGCTTGGGAAAGAAGGGTATTACTTGGTGGAACTAGGACATAGACATTGAGAGGGAAT
TCAGTCCAAAAATACGGCATTGGTAGGGAATTAAGCATAAGTAGAGTCTCGTTCTCTACTCTTAT
CATATCTAGCGTTTTTGCTTTGAATGTCAACGAATTCGATAATGC
Found at i:606914 original size:25 final size:26
Alignment explanation
Indices: 606858--606914 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
606848 CAAAGAGATT
* *
606858 TATGTTACCAACGAAGAAGACTGAGATT
1 TATGTTACCAACGAAGAAAACT--GATA
606886 TATGTTACCAACGAAGAAAACT-ATA
1 TATGTTACCAACGAAGAAAACTGATA
606911 TATG
1 TATG
606915 AAATTGGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 6 0.22
28 21 0.78
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (26 bp):
TATGTTACCAACGAAGAAAACTGATA
Left flanking sequence: Indices 606358 -- 606857
TAAGCAACTCCATTCTGAGGTTTTCGTTATGCATAAACCAGCTCACTAACACAACCTCAAGATGA
AGCAGGATAGCCACGGTTAGGCCTACATATTGATTTGGTTTAGATATGTTATGTCGAATAAGCTT
AGCTTACAAATTGAATTGAAAATAGAATAGGTTGAAACAGAACTCCCAGGGACAGATCTCTAGTT
AACCCTACTATACCTACTATCTAAAGTAGCGGGTAAGAACTACGCACCCGCTGCGCGCCTTTCCC
CTCGCTCTTAACTTGTGTCTGCGCTAGCCCAGATCCCTGCTTCCTGGAGGGGAACTGAAACTGGA
ACTGAATAGCTGGCAACTGACACTCCAACAGTACCAGGATCGAAAGCAAAGATCGAAAAGTATGC
CGGTTCATCCGACTTATACTTATACTTATATATGAATAAAGGAAAGGAAAAAAAAAGTAGTATCG
CCCGCAAACAAAGCACAAGTAAAAGGACAAGGCTTCAAAGAGATT
Right flanking sequence: Indices 606915 -- 607414
AAATTGGTGATGATATTTTGCGAAAGCATGATTTCCTGAACTAGCTTAAGCTGACTTCTCTTTGA
ACTAAGACGCCGCATTTCATTTTCTCGCAGAATTTCCTTCTGTTCTGCCTTTCCTTCAACTCAAC
AACTCAGTGTAGGAAGTAGTCTAGTCAATTGGCTAAGCCCCAGATAGCTGTAAGAAACTCTCTCT
CTAATAAAGAGTGTTAGAATAGAATAAGCGAGAGAGGAACTTGTTTTGTGAATTGCGTGTAGTCC
AAGCAACTAGTCCATCGTGATATGTAAAAGAAGTACAAGCTCTATTTTTCGTATATGGAAAGAGA
ATGTTTTTTATATAACGATGGTAGGCCTGACTTAGTTTCCAGTTCTCCTTTCCTTGCAAGCACCT
TTCCTTCACTCGTGCTTACTCGTAGCGGACCGAGCTTTAGTTCCTTACGCCTTTAGTCTTTGAAT
GAACTAAGGGGCGTAGCGATAAGCAAACTAGTGACTGAGCAACTC
Found at i:627184 original size:13 final size:13
Alignment explanation
Indices: 627166--627190 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
627156 GCAGTGCCAA
627166 GGCTTCTGTACTC
1 GGCTTCTGTACTC
627179 GGCTTCTGTACT
1 GGCTTCTGTACT
627191 GGATCGAGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.24, T:0.40
Consensus pattern (13 bp):
GGCTTCTGTACTC
Left flanking sequence: Indices 626666 -- 627165
AGGGTGTTTTTATTTATCAAAAGAAGTATGCCCAAAACATTCTCTCTAAGTTGAAAATGGAGAAT
TGTAATCCGGTAATGACACCACACCATTGTTGGTGAATGAAAAGTTGGTGAAAGAAGATGGTAGT
GGTGATGCCGATGCGGCACAATAGAGAAGTTTGGTTTTTCCTTTCTTCCCTAGAGAGAGCTTGGA
AGAAATCAGACTGACTGACACCTAAAAAAAAAAGAAATCTGCCAAATCGGTTGTCTTGTCCTACT
AGACTATTATGGGTTCGGTCACCTACCAATTTGATTACTCAGTGAGAAGCGGATAGGCAGGTAAG
TCAAATAGCTTCATTCTGACAAGGAAAGTAGAGAACAATATCAAAAACTTTCTAGAGAGTGGAAT
ACCGGCTAGAAAGGTGGCACTAAGGTTATCACACCAAAGAACCGGAAGTGTGCAGCGAAGTTCCG
CTAAAAGAGACTGTAACCAGGTCAACTCTGCTGCTGCAGTGCCAA
Right flanking sequence: Indices 627191 -- 627690
GGATCGAGAGACGGTAGGTAGGCTGCTTGCTTCTTGGCTGACCAGGAAAGCGGACCCGTACGCAA
TAACCTGTAGTGGATTTCCTGTCATTCGGGCACCCAATGAGTATCAAAGAACGTGGAGCGAAGAA
TGTTGGCTGAAAAAGAGGCCATATGATATCGTGCCCTTCAGATAGCTTCGTATGCGCTTCAATGC
TGACCAGTAAGGAAGAAGCTAAGGGCGTGGCGGGATCCCAATCAGCCGAGCAGGTTCTAAAGTGT
GATATAGGCTTAGAGAACGTATAGGCAAATGAGGATGGTCAAGAGTGCTTGTCCGGGAGCTTTCT
TAAGATACCTTAGATAGAAAAGCTTCCCAGTAATGTTGTTGAGGGTCACAAATATCGGTACTGGT
ATTGGTTGGCACAACTACTTCAATTTTATTGGGATTATTTTGGGAATGGTTGGGCATATGAAAGG
AGAGCTTTGAAAAGAAAAGAAAGAATTCTTACCTAGTCAAGAGAG
Found at i:636481 original size:12 final size:13
Alignment explanation
Indices: 636464--636492 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
636454 AACGACCTAT
636464 GGTAAGTCAAA-A
1 GGTAAGTCAAATA
636476 GGTAAGTCAAATA
1 GGTAAGTCAAATA
636489 GGTA
1 GGTA
636493 TGCCTGGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.45, C:0.07, G:0.28, T:0.21
Consensus pattern (13 bp):
GGTAAGTCAAATA
Left flanking sequence: Indices 635964 -- 636463
GCGGTCGAAAAAGAATGTTCCTCCTCAGGACACGCACCCATACCTTCCCACTGCATCTCTATATT
TTTGGGTCCCATGGATAGCTAAGTTATGAATGACCACTCTAAGCATTCAGTTTCCTCCCATGGTC
AGCAAGCGAGTGAAAAAAGGAAAAGAGAACATGTAAGGAGGACAGCCGGCTACTCTAACTTATGG
TTATTTAATTCAGCTGAACAACAAACAATAGTAAGCGAAAATCTCATTCTACGGAGTCGTGAGCC
AATCACTTATGGTGGTTTTTCTATTTCTCATTGAGCAATGCCCAGCCTGACTTAGGGCCCCTCCC
TGGATGGAAACCCGCGGATACAGAAAGGCGAAGAGAGTCCTTTACACTCAGTGAGTAGTAAGGCA
ATTTAGTCCTTTTTCCCAGTAGTGAATAAAATATAAGGGATTTCCCCTTTCCAGCTTAGTCCTTT
CGCAAGAGTATCCGCTAGTGGAACCACATCCAGTAAACGACCTAT
Right flanking sequence: Indices 636493 -- 636992
TGCCTGGGCAACTGCATCGATCCCACTCCTACTTCACTTGCTTTGGGCGATAACAACCTGTTAGC
TACGGACCTAGCTTTCTTCCCTACTGTGAGCTGCCTGTCTTTGAATTCACTTCCTGGGGTGGGGC
TCCGAAGAACTTCTTCTTAACTTCGTTGCCTTGTAGTGTCGTACCCTCCCTATTAGTTCAGTAGC
TATCGTGCCTTCACCCAGTTAGGAAATGAGTTAAGAAAGCGTATTTCACTAGGATGCGATGAATG
CATCAATTTTGCTTTCTACTTTGCATCTTTCCCCTTCAGGTCTCAGCCCATGGTCTGAGTCAATG
AACTAGTCTCGTACCCTGCTTATGACCAGCCAAAAACAGGTCCTATAGATGCCAACGTTCCGTCC
TTTTAGCCTATTCCCTAGTCTATTATTTTGCTTATTTACCTATCTATTTACAAATTGAAGCGTGA
GTGAAAAGCGCGTATGTATATTGCCTTTTTCGAGTACTCTCGTGT
Found at i:644722 original size:13 final size:13
Alignment explanation
Indices: 644706--644742 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
644696 CAGAGTGTAA
644706 TCAGGAAGTGTCT
1 TCAGGAAGTGTCT
644719 TCAGGAAGTGTCT
1 TCAGGAAGTGTCT
644732 TCAGGAAGTGT
1 TCAGGAAGTGT
644743 AAAAAGGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (13 bp):
TCAGGAAGTGTCT
Left flanking sequence: Indices 644206 -- 644705
AACGCAAGGGCTAGGAGTCCAACGTAAGCAAGTGATGGACATTTAGATGCTAAACTTTCTTTCAT
CACAAGGCCAACACGGTGCGTTGCCGTGCTCTTCTCGGCCCCTGGATAGCTACTTTCTTTAAGAA
ATGAGTAGCATCTCTGCTGTCAAAGGCGAGTTAGCTAGGTAGAGCGGGTAAAAAGCAGCAAGCCT
TGTCTGTGGCCTTTGTGGGCGCTTAGCTCGAAGCGGATCCCTCCTCCGTGTTAACTGGTTTTTCC
GCTTTCACTCTGTAAATTGGGAGGCGACGAGCCGGGCCGAATAAGTCCTGGCCTGGCGCTGGGTG
AGCTGACCCTCTTTCCAGGTTTGAAGTCAAGAAAGAAAGCGGAGACAAGGTAGGGCAAAGGCGCG
AAGCGATGCACTTTTTGTGGGATGTATCGGTTCTTCATCCCTTGGTAGGCAAGGTCGGTTGCCGA
GGCCATCTCGGGCTCTTTCAGAATATTGAAAAGAACAGAGTGTAA
Right flanking sequence: Indices 644743 -- 645242
AAAAAGGCAGTCACGGAAATAGCAGGAATGAAATCCCTCAACTTCTAAGTGCTTGCAACTATTCT
CTTTATTGTATCACTGTCCACTATCTCCACAACCAAGCAAGGCAGCTACATATGCTAGATTGGGG
ATCTCACCCTAGGAACTTAGTAGAAAGAAAAAGGCAATCGTTGGAAGGAAAATATCCCCATGAAG
AGATTGAAGTAATAGTTGGAATGGCCTCTTTTCAAATGCAGAGAGGATAGCATACGTTTTATTAC
TTGAAACCAAATCTCTAGACCAAGGAAGGGCTTTAGGAGGGAGCTTTGCTTCGTTCTGCTCTCAT
TTCCTGGAATTCTCATAGGCTATTTAACACAGTGTTGTTGCCTGATTGACCAAAAGCCATTTCCG
GGGCTTAATTGAAAGACTCTGTGGGGTTAGTTACTCTCCTTGGGGTGAGTGGGTTATCACGATGA
AGACGAATTTCAAGACTGGACTTAGCGATTGACTTACGAAGTGGA
Found at i:646058 original size:13 final size:13
Alignment explanation
Indices: 646040--646065 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
646030 GAGCTCTCTT
646040 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
646053 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
646066 GTAAATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Left flanking sequence: Indices 645540 -- 646039
CCATTCCTTCTTGTTCAGCTCTCCCCCGAGGGGCGCTCCTTCCTTAGGCGCTAGCCAACCAAGCA
TATTCCGCTCTTGCTTTCTAGCCAAGCATATTCTTCCTCTCTTGCTTTCTGGTGCTTGCCCCGGA
GTACTTCCACTCAATCGGCGTTAGCCTCGACCCTCTATTTCCTCTTCCCCTCTGGGATGGGACTG
AAATGCGGCTTGCCAAGAAATAACAGCTACTGCCTCAGGAGCTTACTGCTTCAGCAAATCCTCCT
CCGAAACCACTGCTTCAGAGACGCCTACTCTTACATACAGCTAGCTCAGAAACGACTGCTTCATA
AATCCGACTCCTCAATACCGAACGGAAAGCACCTGCCTATGCCACCACTCCTCAGAAATGGGGCC
TCAACTTTGAATGCATCCGATTCGCTCAGGTAGCCCTAGCCTAATCCCTTGTCTTTTGTCTTCCT
CGGCTCTGGTCCTGCTAACGAACGAGGAACCGCTCGAGCTCTCTT
Right flanking sequence: Indices 646066 -- 646565
GTAAATAAATAGTGGCTTTATTAAACAGTGGAATCCGCGCTTTTGGGATCCGTTTTGATTGAGAA
AGCTCAGGCCCAATGTGCTCTACAGTAGCGCTCCGGAATGGGGCCGTAGAGCCGGTAACCGGAAG
AGCCTAAGATCAACTTGGTCTTTCATTTCGCTCGCTTCGCTGAATATAGAGAGTTTCAAAAGGCA
CTTTCTCTATATGCTTAACACACGCAAGTCGAACGTTGTTTTGTTCCTTTTGTTTGTTGTTTTTC
TTGTTCCGCCCAGTAGGAGCATCCCATTCCTTTTTTTCGTTGGTAGAACCCACGCTAATAGAATA
TTCACTCTCTGGTCGAAGTTTAGACACCCAGAGGGAGTGAAATGCGCAAGAAAAGAACTCTCCCT
TCCAATGTGGTTTTCCTATCAGATAGAAAGTGATAAGAAAAAACAGAGCCCCCTTCTTTAGCAGG
ATCAGAGGGGGGGTGAAGGGGGGTTTACATAAAAAGACCTCCTTT
Found at i:657357 original size:36 final size:36
Alignment explanation
Indices: 657311--657387 Score: 145
Period size: 36 Copynumber: 2.1 Consensus size: 36
657301 AGTCATCTTT
*
657311 ACTTCGGAACACTAGAACAGTAATTCATCTAATACC
1 ACTTTGGAACACTAGAACAGTAATTCATCTAATACC
657347 ACTTTGGAACACTAGAACAGTAATTCATCTAATACC
1 ACTTTGGAACACTAGAACAGTAATTCATCTAATACC
657383 ACTTT
1 ACTTT
657388 AGAAGATGGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (36 bp):
ACTTTGGAACACTAGAACAGTAATTCATCTAATACC
Left flanking sequence: Indices 656811 -- 657310
TTTCCCTGTTCGCATATATTGCTTTACACTTTGACAGCCAATTAAGTGTATATTTCCTAAGTGTA
TATTCCATTCAACAATGAAGTTAAGCAAAGACAATTTCCTAAATATTGTTTGTTCTAGATTTGAT
GTACGAGTCTGTTACCAATCATCTACTTCTGCACATTACAGCAATAAAGCATTTACCCGACACTT
TGGAACAACACGCAAGATAGCCGCCTTTCCTGGCGCTTGGAGAAATATATATCCGAACAACGTCC
GGGCGAAAGCGCTGGAAGGAAGTGAGGCACACAGCACTAAATATTTATAGGAGGTAGGACTTCAA
CATGAGTAGATATGGGTCTACGAGATCGGCCCTTCAACATGAATACACTCTGAAAACACTGTACG
CGAGAAAAGGTAGATCCACCCAAAGAGATTAGTACCGTTTAAGCGTCTAGCATATCATACACACT
TACTGCCTGCAGGGAAATGAGATCGAAAGAGCCCTAGTCATCTTT
Right flanking sequence: Indices 657388 -- 657887
AGAAGATGGAAACAAACATAAAACAGTAAACTCAATATCGGCACTTTTGTTTATCCTGTTGTTTT
TCCCCTTCCTGCAATTCTTGAAATAAAGATTTGACCTGTCCAGGGAGAGACGTCTGAACGCGACA
TAGAGTAGTTTAGGAGATATGAGAAGTGAGGAAGTCCAAAGTTTCAAACTTAATGCACCCTTCTG
TCAATGTACGCGAAACAGTACGCGAAACAAGCAAGGTATTTTTGCCAAAGGAAGGATTACCGGTT
AAGCGGACAGACATGAACAGATAGTCAAACATAGAAAGATGGTACGAAAAGTGGGGAACCCTATT
TCCTCAGATATCCTTTCCCTTAAAAGCGCCCGTATATTAAAATAAAGGAATAGCAAGAGATAGTT
TATTTAATATTGCCTGCCTGGTCTATAATTTCTTTATTTTGCTTTATAGCACTCATATACTTCTT
AACAGTCAAACTATAATATAGGTATACGCCCGCCTAACGACCGAG
Found at i:662306 original size:14 final size:14
Alignment explanation
Indices: 662287--662314 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
662277 GGGTTCGGCG
662287 CTTCTAAATAAAGT
1 CTTCTAAATAAAGT
662301 CTTCTAAATAAAGT
1 CTTCTAAATAAAGT
662315 AGAGAACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
CTTCTAAATAAAGT
Left flanking sequence: Indices 661787 -- 662286
TATACAACACGCAGCTGCTTGTTCGAAAGGATATTTTGGTACAGTATAGAGGAGACGTATTTGTC
TTCCCGCGGGTCGAGATGTCTTTTCCTTGCATTGTAATATATATCTGAAAAGGACGGACTCTCTG
CCATTTCAGTCTTAAGGCATTACAGTTAAGAATTCAAGTTCAGTCTTAAGGCATTGACAGTTAAG
AATTAGAGCGAGAATACAGGTGATGCTGGGAAGTAAAGCCAGTTTGGGGGGAAGTATGCTGATGG
GCATAAACAGTACAAGGTACAAGATGCTTTTGACAAACTATGTGGACGAGTTCGATCCCTTTCTT
GACCAGAAAGAGCATAGGTGAGCGTGCATAGGGTCTTCTGTCTGGGATAGTTGAAATAAATAGAC
TATTGATTTTCTGCATATTCATCTATGAACCATCTTTCTGATTTCAGTACTCTTGCTTGCTTAGT
GGCTTTCTTTTGCTCCACCGTATTATGTAGGTAGAGGGTTCGGCG
Right flanking sequence: Indices 662315 -- 662814
AGAGAACAACAGGAAGTGGGTTTATTACTGTTTAAGGCAGTAAGAAGGCAGTAAATGAAGAAGAC
AGTAAAGGGAAATACGAATGTTCAATAATGGAGCATTGTCCTCGTATACTTTTTCTATCTCGTAG
ACTGTTATGTATACAGCTAGCAGAATATGTGTCCACCAGAGCAAGTATAGTTTATCTTCTTACTG
GGCAGAACTAGTAATGCAAGATTCCGTCCGTGTCGAGCAAAGTCATGCTCGCTCGCATACATTCA
TACCTCCCTTGCCTACCGACTTTACAACGGCTTTTCTTCGACCTCGTTTTGCTTGACGTCGAATG
CCTTGCTTTAAGTGACAGGAGTGAAGTAGGAAATACGCATTTTGGAATTACAGCTTCCCACCTGA
AATAAAACAAAGAAGAAGCACTAAAAGTTTGTCAGTTGAGTGAACGTCGTTCACCCTTTCCATTG
ACAGTCGCTATTTGAGCTAGAGATTAAGCTGAAAAGTGCATTTGC
Found at i:670040 original size:34 final size:34
Alignment explanation
Indices: 669997--670106 Score: 220
Period size: 34 Copynumber: 3.2 Consensus size: 34
669987 AAGCTCCTTG
669997 GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
1 GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
670031 GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
1 GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
670065 GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
1 GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
670099 GCAAGGAA
1 GCAAGGAA
670107 TCCCATATTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 76 1.00
ACGTcount: A:0.45, C:0.15, G:0.27, T:0.14
Consensus pattern (34 bp):
GCAAGGAAGAAAATCGCTTACTTGACGAAGGAAA
Left flanking sequence: Indices 669497 -- 669996
GTTTCATTAGCCACATTCAGTACAATTACTAAGAAAAATCCCAACACCATAAAAAGAACAGTGAC
TAAAACAGCATTCCCTACAGAACCACCAAAGTTGAGACTAAATAGAAAGTACATTATCCTTGATT
ATGAATACACTGAGCCTGGAAATGGAGCAGGAGTTCGGTGGCACTAGTTAACTGATCATCCTCAC
GTATGTCCTTCTCCAGAGATGCTTCAGTCAGCAGGAGCACACTGCATACAAAATCAAGAAATCTC
TTAGACAATATCTAATGAATACGACGTATCTTTAACATGTTTCAAGATGTCACCTTTATTCCAAG
GGTTGCAAGCGAACTGCTGCCAATTCAAGAGATTAGAGGGAAGGCCGGACCTAGGTTACTCAGGT
CCGCTTTTTCTATTGGTCTGCTCTTCTTGTTATTGAACTGGCGTCTTAAATTGGCATGCCCCTGC
CCTAAATCCTCAGAGGGAGGAAGACATCTAGCTAAAAGCTCCTTG
Right flanking sequence: Indices 670107 -- 670606
TCCCATATTATTAAGCAGTTCGATCAACTACTTTAGTAACTACTAGGGTGAAGGCCGCATATTGT
TTAATTGCCAGCTTTATTGATAGAAGCTCTCAGAACGTATTTCATCGTTTAGCTTCAACAGGTTA
GACTAGTGGGCAGATTGGTGTACGCATGCTGTACTGCCAGGTCTGGTTCCAGAAGGGCAGGAGTG
CTTCATTGGTCTTACGGCACATTCTCAAATTCATCTCATAACTTGCTTTCTTCAACCATGGCGAG
TACCTGAACGCTGTCAAAGCATCGACCTTTCTTACTGAGAACTCACACTCTGCCTGAAACACAGG
ACTAGCACATTCACTCACAGCAGAAATTCAATAATGCATAATCTGACAAAGCACTGAGAATTACA
CTCATAGAAGCGATTGAATATGAATTCCAGAGATGTGATTAAATAGAAAGACTCTCATATAAAGT
ACACGAAATATCATTTAATAAGAACACTAGAGGACTAATAACTTG
Found at i:688609 original size:12 final size:12
Alignment explanation
Indices: 688592--688636 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
688582 CCAGACTTTC
688592 CCTTATCCTTGA
1 CCTTATCCTTGA
688604 CCTTATCCTTGA
1 CCTTATCCTTGA
688616 CCTTATCCTT-A
1 CCTTATCCTTGA
688627 CCCTTATCCT
1 -CCTTATCCT
688637 GTTTGACCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 1 0.03
12 31 0.97
ACGTcount: A:0.16, C:0.38, G:0.04, T:0.42
Consensus pattern (12 bp):
CCTTATCCTTGA
Left flanking sequence: Indices 688092 -- 688591
AGAGAGAGGACTTTTTTATGTTCACAAACTTAACAGTTACCTTCTGAACTAACAATCCAAACGAG
AAGCTTTGCAGGAGTACACATTCCCAGATAAGGTCGTTCAGTCTGACTTTTTCTACCAGGCTTCG
GGTGGTATTGCTGTGGGTCTGTTTAGGGTGCTTTAGTGGCTTTCGTTCATTCCTGCGTAAATGAG
TAAAGAACTAGTATTAGGCGGCTATGGGGGGTATTTCTTTAATAGGGTTGCTTTTTCTATCATGA
TAGAGCGTGAGGCTAACGTGAATCTACTCGATCTTTTCCGAGAAACTCCATATATATAGTTGGAA
GGAAACGCTACAATTAGTCTAAATATTGAATGAATGCTTGCTCCTTTAGTACACGCTGATATGCA
GCAGGCTGGTGAGTCAAATAGGTTTTCGGTAAAAGACAAAAAACAAAACGAAACATAAAGTCAAG
GTATAGGAAACACCGTGCTTTTTTTCCTACTCACTCCAGACTTTC
Right flanking sequence: Indices 688637 -- 689136
GTTTGACCACGCCTACGCTTACATGAGGGTGAACCAAAACCACCTTACCCTATTTCTGAACAACA
GGATTTGACTTCCGCTTGACCCAAAAGCAAGAGCAATACGAGAGTGAAGCGAGCCATACGAAGTA
TGCTATTGTATTGGACCAGACAGAAGAGCGAGTATCTTCCTCTTGGTAAGATCAATCATATTCAT
CCCTGACAGACTAGTAGGAGTATACGCCGCTAGTTGATAGATTAGGCGCGTGCTATAAAGAAAGG
CTATTCATGTAATTCTAAACTTGTAACGATTACGCCGTAGATAAACGTATAGTGCGGGTACTAGA
TTTGCCGTAAGTGATTGTTATAGGTACAGGAGAATCCCCTTTTTGACTCTATTTGTTCATCGGGG
AGTAAAGGCCAAAGACATGTAAGTGGGGCTACAGGGATAGGAAAGACTCGTAACTAGGGGTATGA
CCCGGAAAGATTTCACATACTTCCTTTTCCTATTCAGAAATGTAT
Found at i:702006 original size:20 final size:20
Alignment explanation
Indices: 701983--702021 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
701973 TTTTTCGCCT
701983 AAAGAAGTTCTTGGCAAGCA
1 AAAGAAGTTCTTGGCAAGCA
*
702003 AAAGAAGTTGTTGGCAAGC
1 AAAGAAGTTCTTGGCAAGC
702022 TAGGCGCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.21
Consensus pattern (20 bp):
AAAGAAGTTCTTGGCAAGCA
Left flanking sequence: Indices 701483 -- 701982
ACAAGCAAGGGACAACTTTTTATATCTGCATTTCTTGCTTGGCTGGAACGAATTACCTACAGAGC
TAGGTAGGCATTCCAAGACTAGTGCTGTCCACCTACCCCGGATGCATGTGTTAAGCATCTAACCA
ACTGAGCTAGTACCGGTTGTCCTACAAAGCAATAGGCCAGAAGTCTCTTTTCTTGCTGAGCGTTC
GATTCGTTTCACGGGTCCTGGTACAGGACAAGAAAGAAACCTATACGACAAACCCAACTTTCCAA
AGAGAAGCAGCATGCCCAAGCGTTATATTATTACCTGGGTTTGGCTTTCCAACTGTCCATAAGAA
GCACTAGTACCGAAGGGAGGGATTGAAGCAAGGGAGTCAAGAGAGAGGTACCTGGGTTTACAACA
AGCCTACGAAGAAGTTATTGCTGCGGCTGGCTTTCCTGGAACTTTATATTCCGCTACGCTAGATA
CAACTATAAATAGGACAACTGAGAACGGTTAGGTCTTTTTCGCCT
Right flanking sequence: Indices 702022 -- 702521
TAGGCGCGAAAGATATTATATGTCAAAAGTCAGGGCCTATAGTTAGAAGTTAGGTAAATCGAGCG
AGGCCTTACTCCAATGGGAATAGGAAATAGGAATAGCAATTTGAACCAATAAGAAAATATACACT
ATTGACGAAACACGCAAGGGACAAGCTCACAAGCTCTGGACTAGGCCAACTGTCCTACCTAGGAA
GCAAGCTGGGGATGGAGCACAGTCAATAAGCTCGGCTGCAGCACCTAATTAACCAACAGAACCGA
CTAGTCATTATGTTCCTACTGGACAAGAAGCAACTAGTTCAGGGAATAAGAAAGAAGATAAGCAG
CCCTTCCTTTCCTAATCCAGAGACATATTTCTGACTCAAAAATACATACACTGCCTGCGAATACA
TACACTACCTACGACTATACTCTATCTGAGTAAATGCTTAGTGGGTGGGTTTGGCACTGGCTAAA
TCCGGGCACCAACAGAACCTATTGCTTGCCTAAACCTGAGCTTAT
Found at i:712205 original size:24 final size:24
Alignment explanation
Indices: 712175--712223 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
712165 TCCATCATCC
*
712175 TTTCCTTTGTCTTTGTCTTCTTCG
1 TTTCCTTTATCTTTGTCTTCTTCG
712199 TTTCCTTTATCTTTGTCTTCTTCG
1 TTTCCTTTATCTTTGTCTTCTTCG
712223 T
1 T
712224 GCTGATCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.02, C:0.24, G:0.10, T:0.63
Consensus pattern (24 bp):
TTTCCTTTATCTTTGTCTTCTTCG
Left flanking sequence: Indices 711675 -- 712174
TCCTGAACTTAGGGATGACATACCCATCCGGGTACCTTACGGAGTCATATTCCTTGGGATATGGT
CTCCCTGATCGCCTCAGAGGACGAACGAGGTGCCCCGCCCCCGCAGCTTGTAGTTGCTGGTTTAT
CATCTCTTGTAATTCCTGCTTTGTAACCCCTGACAATCCCAGAGTCTCGTAAGAGGTGCTACTTG
GTCCTTCCTCTTCTTTTCCAAATGCATGCTTGGCATTCTCATTGCTTGTCTTGGCTTTAGAGGGA
CTCTTTCCTGGCCTTTCGGAATCGGGCTTAGAAGCACTAGAGTTACCAACAGTGGGGCCAGTCTC
TCCATGAGCCATTTCGGCAATTAAACCTTTTTTGGCTAAAAAGTTATGCAACTCCATGCAGAATC
TTGTGGCATTCCCATTTTCTAAGTGCAAGGCGGCTATTTGTTGGTCTCTTTGCTCCAATTCTCTT
CTCAACCGAGCTACCTCATCATCTTTGTCAGAACCTCCATCATCC
Right flanking sequence: Indices 712224 -- 712723
GCTGATCGAGGGGCCCTTGTGGTCCACTGGTAGAGGTTTCATCTTTTTCATTTTTCTCATTTTTA
GATCTAGTGTTAGCCATATACACAGTAGCATACTCTTCGGGTTCTTCTTCTACACTTATCATGTA
GACAGTGGCCTGCTCTTTTGGTACTTTCTCACGCCAGACCAATCGCTGTCTCTTATTGATCTGTC
GATAAATCGTTTGCTCGCTCAACTTGTGGTTGGCCACCGCGGATTACCACGTTGTCGTGTGTTTC
AGACCTCTCGCAGTCTTTCGTCTCATTTCCTCAAGATGGATGGGACTTGGCAGCATCTAACTTCT
CTCGGAGATCGAATCTCTTCTCCTTCCGTTGTTTAGGCCTCCATACCTTCGTTGTTGGCAAGACG
ATTTTGTGGCTCAGTTGTCGAGCCGAATCATTCGTTCCTGTCCCCTTGGTTAGGCTTTCCTTGAC
AGGAGTGCGAGGAAAAGTCAGTCGTTCATGCACGGGAGTGCGAGG
Found at i:740141 original size:27 final size:27
Alignment explanation
Indices: 740103--740156 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
740093 GAGTAGGTAG
740103 TTCGATCCTTTTTCTTCTGATCTTCCT
1 TTCGATCCTTTTTCTTCTGATCTTCCT
740130 TTCGATCCTTTTTCTTCTGATCTTCCT
1 TTCGATCCTTTTTCTTCTGATCTTCCT
740157 AGTCAAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.07, C:0.30, G:0.07, T:0.56
Consensus pattern (27 bp):
TTCGATCCTTTTTCTTCTGATCTTCCT
Left flanking sequence: Indices 739603 -- 740102
AATTGGGCCATGTTTCGCGAGAGAGACTGCCTTCTCTCAGGCCATAAGTCTGATACTTATAGTTA
GTCGACTGCTCTATGACGGTCTGACCTCTTTACTGGGCTCTGCTCGCTCATCTACGCTCCGACCA
ATTCAGTCAGTAACGAAGTTTCCTTTCAAAAAGTCTAAGAAAATCAAGAAATAGTCAAAAAATGC
ACATTTTCCAGATATTTCTCTTGTTGGGGATCCCTATCTGTATTTATCTCCAAGGAGATATAATA
TCGATAGATCTCTATAGAAATAGATCTATACTCTCCTCCTCCATCCGGAGAGATATGCCCCTATG
AGGAAGCGACTATGCCTTTCTTTTCTTATATGTTTTGACCACGTCTGTTTCCGCTCCAAAGAAGA
AGGTTGAGATCTTTCAATCTTATGTCGTGAGGGATGGAACCTATGTTAGGTCCATAAGATACCAC
CGCTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAG
Right flanking sequence: Indices 740157 -- 740656
AGTCAAAGGGTATCCGGCGCAATAGGTCGATTTTTTATATAACAAAGACTTGTCAACAAAAGGAC
TTCTTTTTTGAGTCAAAATCTTTGGTTTTTTCTCCTTCCTTTTCTTCAATAAGAAGTATTTGAAA
TGAAAAAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGACCTTCCTAAGCATACTTTTGCGGA
TACAACCTTATTTGTTCTTTCGTTGTCTTTTTGTTGCATAGAAACACGCAACTTTTTCTTTTTCA
AACAGCAGTATTTGATTAGTAGGCGGCACCCTCTCTTTGTTTTTAGTAAGCGGAACCATTTTTTT
AAGCGGAACCTTCTTACTAAGCGGAACCATTTTTTTTTGTTTCTTCTCCAAATTCTGTCCGGACA
GCCTTCTCCGAAGATTTTTCCAACTAATATGTCGATATAGAAAGATCTCCTTATTTCTTCACTGC
GGGTTTTCGCCTCATTTTCTGGAAAAGATATGAGATCACCATGGG
Found at i:740484 original size:18 final size:18
Alignment explanation
Indices: 740463--740517 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
740453 TTGTTTTTAG
740463 TAAGCGGAACCATTTTTT
1 TAAGCGGAACCATTTTTT
**
740481 TAAGCGGAACC-TTCTTAC
1 TAAGCGGAACCATT-TTTT
740499 TAAGCGGAACCATTTTTT
1 TAAGCGGAACCATTTTTT
740517 T
1 T
740518 TTGTTTCTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 2 0.06
18 27 0.87
19 2 0.06
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (18 bp):
TAAGCGGAACCATTTTTT
Left flanking sequence: Indices 739963 -- 740462
TGACCACGTCTGTTTCCGCTCCAAAGAAGAAGGTTGAGATCTTTCAATCTTATGTCGTGAGGGAT
GGAACCTATGTTAGGTCCATAAGATACCACCGCTTTTAGTGTTCTATGATTCACCTCCGAATAAT
GAGTAGGTAGTTCGATCCTTTTTCTTCTGATCTTCCTTTCGATCCTTTTTCTTCTGATCTTCCTA
GTCAAAGGGTATCCGGCGCAATAGGTCGATTTTTTATATAACAAAGACTTGTCAACAAAAGGACT
TCTTTTTTGAGTCAAAATCTTTGGTTTTTTCTCCTTCCTTTTCTTCAATAAGAAGTATTTGAAAT
GAAAAAAATTCCTCTTCATTCTGTTGTGCTCAGCGAAGGACCTTCCTAAGCATACTTTTGCGGAT
ACAACCTTATTTGTTCTTTCGTTGTCTTTTTGTTGCATAGAAACACGCAACTTTTTCTTTTTCAA
ACAGCAGTATTTGATTAGTAGGCGGCACCCTCTCTTTGTTTTTAG
Right flanking sequence: Indices 740518 -- 741017
TTGTTTCTTCTCCAAATTCTGTCCGGACAGCCTTCTCCGAAGATTTTTCCAACTAATATGTCGAT
ATAGAAAGATCTCCTTATTTCTTCACTGCGGGTTTTCGCCTCATTTTCTGGAAAAGATATGAGAT
CACCATGGGAAACTTTCCAATGAGTAATGCTGACCAGTCCATTATTCACACAAACCTTTCGATGA
CTTATCAGCTGCCTTGCTTGAGGAAGAGTGTTACTAAAATGGAGACGAACCAGAATCACGTCCAA
TCGTGTTTCTTGATTGAGTAAAAAAGGGATATATGAAGTGCGTTCTCTTCCTCTGTGCATCTCCC
TTATGGGTAAACCCCCATAAAAAAGGGACAACTTTCGTGTAGTTTGTAATTTTATGTTACTGTTT
CGATTTTCTCTCAGAGAAAGATTTCTTTTAATGGATTTCCGCTTTTTCCTCAATCTTCGGAGAAT
GCGGCGTTGTATTTTAGAAAGTTCTCTGTTCCAAACATTTCCTGG
Found at i:766048 original size:19 final size:19
Alignment explanation
Indices: 766024--766062 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
766014 ATCTATGAAG
* *
766024 ACTAGACAGATACTTTACA
1 ACTAGACAGAGACTTGACA
766043 ACTAGACAGAGACTTGACA
1 ACTAGACAGAGACTTGACA
766062 A
1 A
766063 ATTCACTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (19 bp):
ACTAGACAGAGACTTGACA
Left flanking sequence: Indices 765524 -- 766023
TCAAGTAGCTAAGTATTCCACTTATCAGCAGGATGTTACAACATTTCTCACTCATTTTTAGAGTG
TCATCGAGAATGATGAGTTTATTGATAAAGCGTACGTCGCACAAGTACAATCCACTAATAATGCT
AAGTATATAAATCGAGTCTTTCCGTTGTTGGAGGAGCATCGTAGCCTAGTGAAGAATACAGAAGC
AATGAGGGAATTGCAATTCAAGATCGAAAACTTCAGTCTGAGATCTTTCCAATTACCCTCGGAAT
GTATCTACTTAGCTTGAAATTCCAGGTGAGATCTGAAGGTTGAATCCCTCTGTCCCTGCCTGAGA
TGTATGTCTTACCTATCTTTAATATGTCTACTCTATATTTGTGTATAACTTATCTGTTGCTGTAG
TCCAACGATTAACATGCGTCCTTCTTTGAAATCGAAACATATGAGTACCTCCTTCCTTATAAGAA
GAAGAAAATTGACTGCCTGCCCATTAAACCAATAAATCTATGAAG
Right flanking sequence: Indices 766063 -- 766562
ATTCACTAGGTTCCTTCGAGGATTGTGTGAAACATTCATTCCTTGCCAACAGAAAAGGAATTAGG
CTAAATGCATGTCAATATAGATACACTTAGGCTAAATGCATGTCAATATAGATACACTTAGGTCA
ACCTTTTCCGGGTAGAAAATTGCTTAGCTGCCGATACTAGATATAGGAGATAATGGCTTAGTTAG
GATATAGGGGGGAATGGCTTAGTTAGGATATAGGGGGGAATGGCTTAGTTAGCTGCCGATACTAG
ATATAGATTAACCGGATCGTCTATATAGGATAGGAGCAACTGAAGTTAACTAACTGAAGTGAGAA
AGAAAGTGAAAAGAAAGCATATATAAAAAGTATATGTTCGTCAGGCTTCACTTCATTAAAAGCGG
ACAAAAAGAGTAGGAAAAGAATTACACTATTGTAGAGTTGAAAGTTCTCCCCCAATAAGCATATT
TTCGTAAGTAGTTCACTCGAAAGTGAAAGTACAGAATTAACTAAG
Found at i:766161 original size:31 final size:31
Alignment explanation
Indices: 766123--766189 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
766113 AGAAAAGGAA
766123 TTAGGCTAAATGCATGTCAATATAGATACAC
1 TTAGGCTAAATGCATGTCAATATAGATACAC
766154 TTAGGCTAAATGCATGTCAATATAGATACAC
1 TTAGGCTAAATGCATGTCAATATAGATACAC
766185 TTAGG
1 TTAGG
766190 TCAACCTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (31 bp):
TTAGGCTAAATGCATGTCAATATAGATACAC
Left flanking sequence: Indices 765623 -- 766122
CGTCGCACAAGTACAATCCACTAATAATGCTAAGTATATAAATCGAGTCTTTCCGTTGTTGGAGG
AGCATCGTAGCCTAGTGAAGAATACAGAAGCAATGAGGGAATTGCAATTCAAGATCGAAAACTTC
AGTCTGAGATCTTTCCAATTACCCTCGGAATGTATCTACTTAGCTTGAAATTCCAGGTGAGATCT
GAAGGTTGAATCCCTCTGTCCCTGCCTGAGATGTATGTCTTACCTATCTTTAATATGTCTACTCT
ATATTTGTGTATAACTTATCTGTTGCTGTAGTCCAACGATTAACATGCGTCCTTCTTTGAAATCG
AAACATATGAGTACCTCCTTCCTTATAAGAAGAAGAAAATTGACTGCCTGCCCATTAAACCAATA
AATCTATGAAGACTAGACAGATACTTTACAACTAGACAGAGACTTGACAAATTCACTAGGTTCCT
TCGAGGATTGTGTGAAACATTCATTCCTTGCCAACAGAAAAGGAA
Right flanking sequence: Indices 766190 -- 766689
TCAACCTTTTCCGGGTAGAAAATTGCTTAGCTGCCGATACTAGATATAGGAGATAATGGCTTAGT
TAGGATATAGGGGGGAATGGCTTAGTTAGGATATAGGGGGGAATGGCTTAGTTAGCTGCCGATAC
TAGATATAGATTAACCGGATCGTCTATATAGGATAGGAGCAACTGAAGTTAACTAACTGAAGTGA
GAAAGAAAGTGAAAAGAAAGCATATATAAAAAGTATATGTTCGTCAGGCTTCACTTCATTAAAAG
CGGACAAAAAGAGTAGGAAAAGAATTACACTATTGTAGAGTTGAAAGTTCTCCCCCAATAAGCAT
ATTTTCGTAAGTAGTTCACTCGAAAGTGAAAGTACAGAATTAACTAAGTCGTGTTGGTACAGTAG
TTAAAAAGGGTAGTTAGAAGACCACGGCCAGTTAGACTGGATCATCTTTCTTGCTCCGTGTCTGT
GAAGAAAGAGAAGAGCGGGCGGAGAAGCACAAACGAGCCTAATAC
Found at i:766273 original size:26 final size:26
Alignment explanation
Indices: 766244--766309 Score: 132
Period size: 26 Copynumber: 2.5 Consensus size: 26
766234 TATAGGAGAT
766244 AATGGCTTAGTTAGGATATAGGGGGG
1 AATGGCTTAGTTAGGATATAGGGGGG
766270 AATGGCTTAGTTAGGATATAGGGGGG
1 AATGGCTTAGTTAGGATATAGGGGGG
766296 AATGGCTTAGTTAG
1 AATGGCTTAGTTAG
766310 CTGCCGATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.27, C:0.05, G:0.39, T:0.29
Consensus pattern (26 bp):
AATGGCTTAGTTAGGATATAGGGGGG
Left flanking sequence: Indices 765744 -- 766243
GAAAACTTCAGTCTGAGATCTTTCCAATTACCCTCGGAATGTATCTACTTAGCTTGAAATTCCAG
GTGAGATCTGAAGGTTGAATCCCTCTGTCCCTGCCTGAGATGTATGTCTTACCTATCTTTAATAT
GTCTACTCTATATTTGTGTATAACTTATCTGTTGCTGTAGTCCAACGATTAACATGCGTCCTTCT
TTGAAATCGAAACATATGAGTACCTCCTTCCTTATAAGAAGAAGAAAATTGACTGCCTGCCCATT
AAACCAATAAATCTATGAAGACTAGACAGATACTTTACAACTAGACAGAGACTTGACAAATTCAC
TAGGTTCCTTCGAGGATTGTGTGAAACATTCATTCCTTGCCAACAGAAAAGGAATTAGGCTAAAT
GCATGTCAATATAGATACACTTAGGCTAAATGCATGTCAATATAGATACACTTAGGTCAACCTTT
TCCGGGTAGAAAATTGCTTAGCTGCCGATACTAGATATAGGAGAT
Right flanking sequence: Indices 766310 -- 766809
CTGCCGATACTAGATATAGATTAACCGGATCGTCTATATAGGATAGGAGCAACTGAAGTTAACTA
ACTGAAGTGAGAAAGAAAGTGAAAAGAAAGCATATATAAAAAGTATATGTTCGTCAGGCTTCACT
TCATTAAAAGCGGACAAAAAGAGTAGGAAAAGAATTACACTATTGTAGAGTTGAAAGTTCTCCCC
CAATAAGCATATTTTCGTAAGTAGTTCACTCGAAAGTGAAAGTACAGAATTAACTAAGTCGTGTT
GGTACAGTAGTTAAAAAGGGTAGTTAGAAGACCACGGCCAGTTAGACTGGATCATCTTTCTTGCT
CCGTGTCTGTGAAGAAAGAGAAGAGCGGGCGGAGAAGCACAAACGAGCCTAATACTGTGTCTATT
GCTTTATTCTTTTCCTATATTCAGTGGAAAGGCTTGGTGAAAGCGTGCGTCTCCACTTGTTCCGG
TACCTGCGCGGGTAGAGTATTCGTCTCCTCAATCCAGGAACAAAA
Found at i:768215 original size:17 final size:17
Alignment explanation
Indices: 768193--768227 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
768183 ACCTTGCTCG
768193 GCTATTGAAGTAGGTAT
1 GCTATTGAAGTAGGTAT
768210 GCTATTGAAGTAGGTAT
1 GCTATTGAAGTAGGTAT
768227 G
1 G
768228 TAGTAACGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.31, T:0.34
Consensus pattern (17 bp):
GCTATTGAAGTAGGTAT
Left flanking sequence: Indices 767693 -- 768192
GCTTTACGGTAGATCTGCTACTACTGTGACCTATATCGATTGAGCGATTGTAGATCCAGTGGTAG
ACCAGTGAACTCCAGGGTATTAGAGATAATGATAAGGTTACCGGGTCGCGAGCCATGACTCCAGT
TGGAGGAGGAAATAGACTTACTTTGACTTGTAGGCATAGCACATGAGCCTATTTCCTTCTGCGAG
TCAGAAAGCCTTAACGCCTTTTGGGTGCGGGAGAGAAGCACTCTTCATCAGTCTAATTGCATGGC
TTCGACAGACTCCTCCTAGTTCGTGCTACGCTAAAAGAGAGTCAGTCTCACCAACCGTCTTGTTA
GCAGCAGCTTATGAAAGAAAATAAGAGTTCCCACGACTCTACTTAAGAAACTGCTACCATTTCCT
TTGTTGCTCCCGTGTTCGTTCAATCAAAATGAATATAATCCGGATGTCACTTCCTTCGCTCCCCG
TCCTCCAACACTTTCCTCAAAGAAAGAATTGACTTACCTTGCTCG
Right flanking sequence: Indices 768228 -- 768727
TAGTAACGGGACTCTAAGTTGTTTAATATTCCATTCACACCAGTCAGACAAACATGAGAAGAAAA
GAAGTAAAGCCGAGATGCAATTCAGATATTCTTGTTAGAAAGTTTCTCTGCGAAATACATATTAG
ATTCACTATATTGGTAAGACCGGATATGCTACATTCAACAACCATGTTAAGACAAGAACGGATCC
GCTGTTCTGTTTGCAAGGAACTTACATAACATAAGAATTTACGAGGAGGAAGTCTAGATAAGTTC
TCTTTCCCTTGCTTTTAAGGCTTGAACCTGATAGTAGTTGCTACCGAATTGGCACCGGATTTTCT
TTACATAGATTAAGATTAGCTTCAACACATCAAAGCTTCCCTGAACTTCAGAGGGCTTAAAAGCT
CGACCTACTTCTTTCTATCAGAGTTGGAGAACTATGAAATTGGGCCTAGTAATAAGCTTAGAGTG
GAAGAGTCTGTGAGGAGGAGGGCATCTGCTCTTTGTTGACCTTTC
Found at i:771138 original size:20 final size:20
Alignment explanation
Indices: 771113--771153 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
771103 CCCCCCCGTA
* *
771113 GGATTTTATCTCAGTAGGTT
1 GGATTTCATCTCAATAGGTT
771133 GGATTTCATCTCAATAGGTT
1 GGATTTCATCTCAATAGGTT
771153 G
1 G
771154 TGGTCTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.41
Consensus pattern (20 bp):
GGATTTCATCTCAATAGGTT
Left flanking sequence: Indices 770613 -- 771112
AGGGCAGCTCGCTCGGGGCACCTCTTTGCGATTCCCCACAATTCGAACTGAAAGCAGTACGAAAT
GCGATTTACCCACAGGAAAGTAGGCGCTGCGCTTTTGTTCATTGTTTTCCCATTCTTCTTCCCGC
GCACAAGTGATCTCAGGCTCGTTCTTCTCCTCTTCTATAGATGGTGAATCGGAGTTGCCCAAAGA
CATGGCAAGTGCACGTGCAAGGTAATCATCCTCTTGCGGCTCCTCTGGATGTGAGAATAGCCAAT
CAGTTGCAATCGCCACACCGTTTGTGCTGTCTAAGAGCGTCTTAAGCTCTCGCACGGGGGAAACC
CATTTCTACTAGCAAAGCAATTGCAGCCTCAGAAGGTGGTGGACCCGCCAGACGCGAACCACTGC
TACCACTCCCTGTGTTTTTCACCTCAACCCCAGAGTACACATGTCTCATGATAGATGTCAATGCA
CTAACAAACTCCAAGTTGCACTCGGCACATCACCTCCCCCCCGTA
Right flanking sequence: Indices 771154 -- 771653
TGGTCTTTCTCCAATCGATCTATACCTTCCCCGATTACCAGAATCTCACTCTCTTCTTTCTACTT
AATGTTCATCCTCGTCACTGAGCGGATCATCTTCATCAGCCTCCTGAAAGCCATCTTTTTCTCCT
GGATCAGCATCAGATACATTACCATCTCCTTCTTTCCTTCCGTGTTGACAGCCGGGTGGAAGATT
TCTTAGTAAAGATTATGCTATGGGGGGAATTGCCCCAACTGATCTAAAAGGGGGTTACTTGAACC
CAGGTTAAGAAGAGCTAACACCTCGGAGGTACATGACCTCAAAAGACTATGATCACTTCCACGCC
GAGTTCAACAGTGTGGAAGCCTATGAGAGACTATGCAGGTTGTTAAACAACATGCAAGAGGTGCC
GTTCATGATTAATGGAGAAATGCTCGAGAGACAGACTTGTTGGGTACGAAGAAAGTAGAGAAGAA
CTTGTTTCATCGGGTCTGCTGATGCCACCGTTCCTTGCCAAAGTG
Found at i:780791 original size:24 final size:24
Alignment explanation
Indices: 780759--780807 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
780749 AAAATTTCAT
780759 ATTCATGCATCATCATTGGATTGG
1 ATTCATGCATCATCATTGGATTGG
780783 ATTCATGCATCATCATTGGATTGG
1 ATTCATGCATCATCATTGGATTGG
780807 A
1 A
780808 AAATCTATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (24 bp):
ATTCATGCATCATCATTGGATTGG
Left flanking sequence: Indices 780259 -- 780758
CACTCTATTGTCAACTTCTAATAAACGTAATTGACCCAATTCTAAATCATCTTCTGGAATCATAT
AACTGTCAAAAGTGAGTGACTGTTCATCGGAACTGTTATAGTCCGAATACTCATAAGTCCAATAC
CATTGATGCCCAATAGCTTTTATAGTAACGGCTGGATCTACTACAACTTCGTCCATTGAGTATAA
GAGAGCAAAGGAAGGTATAGCAATGAACATCAGGATGATACTTGGAAAGATGGTCCAAATTATCT
CGATAGTAGTTCCATGAACAATCCTTTGCGGGATTGGATTCGTTTTTTCGTTGAAATGCCATAAA
GCCCGAACCAGCATCCATAATACGAAAACCAAAATGAGAATCAGGAAGAAAAAGATATCGTGATG
TAAGTCAATGATTCCTTGCATAATAGGTGTCGCCGCGTCTTGAAATCCTAATTGCCATGGTTCCG
CTGCATCACAAAAAGTGCTAGTGAGGAATCGAGAAAAAATTTCAT
Right flanking sequence: Indices 780808 -- 781307
AAATCTATTCTTTTTTGACTCAGTCTCCCCAACAAGCAACGGATTGAGCTTTAGAAAACCTAAAG
CACGCTCATCCGGAAACTTGCGAGAGAGAATTTCTTGGTTTTTGAACTCTCAGGTTATCTCGTCC
AGAGAGCCAATATTCTAATAGCGTGGGTTTCACCAACGAAATAAAGAATGGGATGCTTTGACTTG
CCGGAAGAAGACACACTCAAAAAAACACACTATTGTAGAGTTTATTCACGAGTAAGAGTTCGGAA
AGCACAAGAATTTACTTTGTGGTCGGTACTGTGTTCAGCATAGACATAGCTATCTTCCTTTTGCT
ACTATCTATGTTCAGCTAAGCGTACTGAATCCCATTTTGGCTCTTAGGCTCTCCCGGTTACCGGC
TCTACGACCCCATTTCGGGGCGCTACTGTAGAGCACATTGGCCCTGAGCTGTCTCAATCCAAAAT
GAAACACATCGCGCTCAACTAAAAAGAAAACACACTATATACGAG
Found at i:818911 original size:20 final size:20
Alignment explanation
Indices: 818886--818926 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
818876 ATTGACTCAA
*
818886 TGCATGTCCATTCCGTTCTT
1 TGCATGCCCATTCCGTTCTT
*
818906 TGCATGCCCATTCCTTTCTT
1 TGCATGCCCATTCCGTTCTT
818926 T
1 T
818927 TGTCTGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.32, G:0.12, T:0.46
Consensus pattern (20 bp):
TGCATGCCCATTCCGTTCTT
Left flanking sequence: Indices 818386 -- 818885
AGAATGCCCCAGTAGCACTCATTGAAATAGGCTTATACTTCTTGCTCTACCATCTACATATCTAA
AAAGACTTAATTGCTCTACCAGTTACATTCTACCATCTACATAGAATCAAGAAGTATAATAACTG
AAAGCACTTGTTTCTTTCTATTTTCACCTTGTGTAGTATAGAGAAGCGAATCTTCACAGTAACCT
TTATTGATAAAGCGTTGGCACCAAAGAGCTCTACTGTTGTGTGGTGGCAGGCGGTCACCGTCCTT
CGCCCTTACTAATTAGATTATTCAGATTCGATCTTGACTTATGCTTTTTATATATGCTTAAAACT
TGCAAGTTTAGCCTTGTGCGGACTACCCCTAAGTCAGTGAGGAAGCCCTAAGTAAGTGAGTCACA
GGGTCTGATTCTCTCTCTTTATGAATTTCTTTGATAAATAGTCTTCGCCAGTGCGATTGCCGGAA
GAGATGCACCACAAAAGAAAAGCTCAGAAGAATAAATTGACTCAA
Right flanking sequence: Indices 818927 -- 819426
TGTCTGATACGCTATTTCTGGGTAATTAGCTGCGCAGAAAGCAATGCATCTCTGGTCTGGGGTGG
AGAAATACGTCCCTTTGGACTCCTCTCCTAATTACAGGAAGATAGAGTGTCAGAATGCGAAGAGA
AAGCGTAAGAATGCGCACCAAGAATCAAAGCTTATAGAGACTGGGCAAGCTTCAATTGCTCGTAC
CACAAAGAAATCTCTACAGATGCTAGGGAATAGCTAGAAGAATCTGTGAATAGGGTCAAAGGTAA
TGGTGGCCCTGCTTCATCTTGTTCGCGAAAGATCAGGGTCAGGTATGAAGAAGAGGAAAGGGAAG
AAAAGCATTATATTATGCTGGGTCAGACACAAACCATATGGGTTGTGAACAAAGAAATAATACGT
ACCGGCAGGCAATAAGGGTAAGTGCGACATGAAAGGGCGGGCGCAGGAATATCCCTACTCTTAGG
AGGATAACAACTTGGGTGATGGACCCTCTTTACGAATCGATTTTT
Found at i:823539 original size:17 final size:16
Alignment explanation
Indices: 823517--823555 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
823507 AAAACGCTAA
823517 TAAGTACCTACACTATG
1 TAAGTACCTACACT-TG
823534 TAAGTA-CTACACTTG
1 TAAGTACCTACACTTG
*
823549 AAAGTAC
1 TAAGTAC
823556 ACTATCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 7 0.35
16 7 0.35
17 6 0.30
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (16 bp):
TAAGTACCTACACTTG
Left flanking sequence: Indices 823017 -- 823516
ATTAAATATACTTTGTTTTCTACTTAATATATTTATCTCCTTTCTTGACAACAGGTGCTTCTTGT
TTGAATTCATCCGTAAACCTAATAACATTCCCCTCGATAAGAAACTAAACCATGTGTGCGGAAAT
GCTGTGAGAAGTCTATATTTCTGCACGCGACTTGGTTGAAGTTTTGAAAAGATTTTGAGGACGGA
CTTTTCTCTATGTTCTGAATTCGATGAGCTTAGTCTTTAGAACAAAGATCATCAGTCTAAAGACA
AAGGTTACTCTTCTTCTGACTCTTCTTCTATATGAAAAATAAGGCAGTGAAAGCTTATTCTTATT
TTTCTTCCATTCAACCTTATCTATTTTCTCCCCAGTGAGTAACTACTAATGTTACGAACAAAGAA
ACCCAGGTGCGAGTCTATTATTTAAGTCAGATTCTTTCTTCGGTCTGGGTAGAGAAGAAGTGGAA
GGCAGGCTATCAAACTCTAATCAATGAGTACACTCAAAACGCTAA
Right flanking sequence: Indices 823556 -- 824055
ACTATCATAATAATTTCTTGATAAGAATTTCTTGCACCTCCCTCGCGTACAAACAAGTAGAAGAC
CTGCATCCATGTATATTTCATATAAGGTTCCGCCTGCGACCGACTCTCGCTAAGCAGAAGAGCTC
AAGGCCCACCAAGGCAGGAGGTCCAAAATAAAAGCAGGCAGATGTTTGGCTCACTCTTTCCGTTC
GCTGGGTCAAACCTTTCACTTCGCGCCTTCATCCGAAGAATCAATTCAATGAAAGAGTGCGTGCA
AGTACAACTCACCTGATATTCTAATAGTTCTAGGAGAACTCACGTAACCTTATAGATAGGTTATA
TCTCTATAGTGATAAGAGCTCTAGTAATAGGGGATGAAATCTCCGAGTAAGTAATGCCCTGCAAG
AAATAATGAAAGCAATTTCATTGAGAAGTCTAAAGAAAGAAGAGCCATAAGAAGCTTCACCTACA
ACCCTATGCTATAGAAGGTGCAAGAAAAGCGTATGCTGGTGCAAG
Found at i:853402 original size:42 final size:42
Alignment explanation
Indices: 853337--853417 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 42
853327 AGTCTATTTT
*
853337 ATGTATGTATTCAAACTAGTAATATAA-GAATAAGTATAACCC
1 ATGTATGTATTCAAACTACTAATA-AAGGAATAAGTATAACCC
*
853379 ATGTATGTATT-ATTACTACTAATAAAGGAATAAGTATAA
1 ATGTATGTATTCA-AACTACTAATAAAGGAATAAGTATAA
853418 TGCCTAGTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (42 bp):
ATGTATGTATTCAAACTACTAATAAAGGAATAAGTATAACCC
Left flanking sequence: Indices 852837 -- 853336
ACGAGATCCTCACCATAAGGGATGTATGTATCGGTATGCCCACGTCCGTACCCACGCCTAATAAA
ACTGTCTTGGTTCTGGTTAGGTATGTAGATTGCAGTCTTTGCATCATCGTAGTATTGAGTCCTAC
CTAAAGATGCTTAGAGCTAGTGAAGATACAGTTATCTTACTTTCAATGTCTACGCTAAACATATT
CTAAGAAATTTCTTGGGCTTTTTGCATTCTACCACCAAGGAGAAGGATATCCCGTTTAAGATAAT
CCAGATTTTCCACTTGATTAGATATCAGGTTGGTTACAGAAACCATATCATGGTCGCGCGCTCCC
CTTTAACACCAAACAAAAATTAGTAGCTAGGGAAGCTAGGTTCCCAGGGAGTAGATGCAATGAAT
CCCTTAATCGGAATAACAGTCTCTTTATCGAGGAAGAGTACCTTACACTGGTTCCATATAATACT
CTTGCCCCTACGGATCTAGGGTAAGTGTTCAAAAAAGTCTATTTT
Right flanking sequence: Indices 853418 -- 853917
TGCCTAGTAAGATGAAAGGAAGAAGTATATATATAAGGTAAGAAGTTGTAAAGAAATTATTATAG
TGGAAGCAGTGGATTGAGAGTCCCTATGTAAACGCTCGTTGAAAACAATCGGGAGACCCGTGCGT
CTGTAGTGGATATCTGATTACTCTCGAGGACCCCATCTATCCTCTATTAGGTAGTCGGGTTGGTT
GGTATACTTTGTTAACGTATTTGAAATTCTTGTCAAGACCGTTCAAAAGAAAAGCACGAGAGATA
AGGAAAACTGCTTTTCAAACCACAGAGCGTCTTTTTGTATACTAAATTTCAGAGTTGGTGGATGC
ACTAAAGGTAGGTGCGCGAAGAAATAATAGTAGTTTCTTCGAAAGGGGATGTCCTCTAAAAAGAA
TGAGTGGAGTAAAATCAAAGTATATCGATGAAAGTTGAAGTCATTTATGGAACTAGAGGACGGCC
TCAAGACGTGTAGAATTGCCAGCCCAAAGTGAATTTCCTTGAATC
Found at i:854152 original size:15 final size:16
Alignment explanation
Indices: 854124--854154 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
854114 GAGCAGGTAG
854124 GAAGGTAGGGAGTACT
1 GAAGGTAGGGAGTACT
854140 GAAGGTA-GGAGTACT
1 GAAGGTAGGGAGTACT
854155 ATGGTGATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.32, C:0.06, G:0.42, T:0.19
Consensus pattern (16 bp):
GAAGGTAGGGAGTACT
Left flanking sequence: Indices 853624 -- 854123
TTAACGTATTTGAAATTCTTGTCAAGACCGTTCAAAAGAAAAGCACGAGAGATAAGGAAAACTGC
TTTTCAAACCACAGAGCGTCTTTTTGTATACTAAATTTCAGAGTTGGTGGATGCACTAAAGGTAG
GTGCGCGAAGAAATAATAGTAGTTTCTTCGAAAGGGGATGTCCTCTAAAAAGAATGAGTGGAGTA
AAATCAAAGTATATCGATGAAAGTTGAAGTCATTTATGGAACTAGAGGACGGCCTCAAGACGTGT
AGAATTGCCAGCCCAAAGTGAATTTCCTTGAATCAAGCTCGAATTCGGTCTTTCTTTCTCCTTCA
ACTTTTTCCAAACCAAAATAGACCGAATCTTACACCATTCAAATAGAAATGAATAGATCATAATA
CTCCCAGGTTGCATCTTTCTCGGGACGATTAGACCACTTGATTGACAACTTCACCACTGCAGAAT
TTCCTTGCTTTCGCAACAAATTGAGGATTCCTTTTGAGCAGGTAG
Right flanking sequence: Indices 854155 -- 854654
ATGGTGATGAATGATTCCTTTCTTGATTCTGTGGTAGCAACTATGAGAGTGTAGAAGATAAAAGT
TATGGGCTTTCTTAATATGTCTAGGTTTCACGGTATTCTTATGATGAAACATATTATTGGCAATA
GGCATGAATGAGTACTGAAGCTATTAAAGATAAAAGTTGACATTTCTGAGTTTTCAGTTCTGATA
GCCTGCCCGGTCTTTCCTACTTTTTTGATCTGGTGTGATCGACTTGTGGAGGGAAGTACTTAATA
CGCGTTTCAAGAACAACCCAGGGAAAGAAGACTGGTGAGATATGGAATGGAAAAGATTGGAAAAA
GGGGAACTAAGAAAAGTGAAAGGCCAGGCTTGTAGCTAAGAAATATACTTAATAACACGACCCCT
TACTCAGTTTGCCTTACTCGAAAGAAGCACTAGCGTCACCCTAGCCAGCATTCTTTGGATTGAGG
AGAATAAAAGCCATCTTATTCTTAGTAGAGGTCAATTCAATGCTC
Found at i:884868 original size:22 final size:22
Alignment explanation
Indices: 884843--884888 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
884833 TCCTTTTACT
*
884843 ATAAGAGCAGTAAGTTCCATAG
1 ATAAGAGCAGTAAGTGCCATAG
*
884865 ATAAGAGCAGTAAGTGCTATAG
1 ATAAGAGCAGTAAGTGCCATAG
884887 AT
1 AT
884889 GAACAGCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (22 bp):
ATAAGAGCAGTAAGTGCCATAG
Left flanking sequence: Indices 884343 -- 884842
ACGAGATCTTCTGGTGCGAAAGCCTTTTATGATTGATTAAGAGCAACTCACTTCGAGTATGGGAA
TGTTGTAAATGAGTACCTTAGAGAATATATTCACCATTCATTAAGAAAGCATCGATTGATTGACA
TCAACCTTCTTCTATCAAGGAAAGTGAAGCTAGCACAGGCATACAGACATACGAATGCATCCACC
AGTATGCAATAAAAGAAGAGTTTGTCGCGGAATTGGCATGTGTAAATGGGGAAATATCAAAAAGT
TCTTGAAATTCGAGTGCCAGCTAATCCGTTTGGTTAACCCCGCCTAGAGCTCAACCCAGCGGAAT
TCCTTTCTGATTCGTAGAGGATTCGAACTCTTTTCTATGAATTCTTCATTTGCTACCCAGGCGTG
CGCCCTGCTTTTTCATTCTACTCTGGAATTCCCGAAGAGCATTGCTATAATTACCTTACTTATAC
TGCTTTTATGCGGAGATCCTTCTTTCAGCTCAAAGTCCTTTTACT
Right flanking sequence: Indices 884889 -- 885388
GAACAGCTAAGATATTTGAATCGTTTAGCTCCTGTGGGTTTGTCTCGTGCGCTGCTTGCACAATT
AGCATGACCATGGGTTCCATAACCTGCAACAACACAAATTCCTCTTACAGCTCACTCAGCCAGAT
ATTCGTAAGGGTAATTCGGGTAGAGAACTCCCATCCCTAACTGCTCGCTCAATCAAGTCAGTGAG
TCAGAAATGGATATTCGTTGAGTTTTTTCACTGATCAAGCTTCCCTTTCTTTATGAAAATACACT
ATATACGAGTTTCTGTGATTAACAAACTACACACACTAGAGTTTGCCTCGATTTGGTACCGCTTG
CGCAGCCCGCACCGAAACAGTGCCCCACCCAGTAGCCATCCCAAACTGAAGAACAAACTGGGTGT
CCTTCCTGCCTTATTCCTTTGCAATAATGGGACATGAACCTTACCAACTTGTGATCGATATGTTT
GACTACCTACTCATGCTGCTCCTACCTACCTAGTTTGAGATTCCA
Found at i:922781 original size:29 final size:29
Alignment explanation
Indices: 922739--922801 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
922729 AAGAACTCAA
922739 AAAGATCAATAGTAAAGGGGAATTGCTTT
1 AAAGATCAATAGTAAAGGGGAATTGCTTT
922768 AAAGATCAATAGTAAAGGGGAATTGCTTT
1 AAAGATCAATAGTAAAGGGGAATTGCTTT
922797 AAAGA
1 AAAGA
922802 AGAGCTCGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.25
Consensus pattern (29 bp):
AAAGATCAATAGTAAAGGGGAATTGCTTT
Left flanking sequence: Indices 922239 -- 922738
CGAATGTAGCTTGCTTTTTGCTAGAACTTTCAGGTCTTGAACAGAGGAATTCACGACCTGCGGCC
TTTATTTCTTCGCACGCGCCTTGCTGAAAGACTCGACTTTACTGTCTGTTTTTGGTCTTTGTTTT
TTCTCGTATATCGATAGCTTTTTTTCTCTTTTTGTGTTCTTGGAAATAAGGCGCGAAGCGTCGAC
TGCTTTATTTGCATAGATCGGCTGCTTGTAGTTTGTCACTACTTGAAAGAAAAGGAATCCATAGA
ACTATTTTTGAAAAAAGCAAGGCACGCAGTGATAGTTTCTTTCGTCGGGAATAAAGTCTTCAAGC
AAGCGAGGGAAGTCATTCTACCAGTAACAGATAGTTTCGGGTTAACGTAGAGTGAACAAATCGAG
TGTTAGGGAAATCGGAATTCCAGAATCGGTTGAATCAATCGAACAAAGAGTTGCAAAAGCAAAGT
AGCAAAGAAACGACGGGAAGGACAGACTGCCAGCAAAGAACTCAA
Right flanking sequence: Indices 922802 -- 923301
AGAGCTCGCTAGGAGATGCTAACTTTTCTCAAGAGAAGAGTTGGTAAAAAGTCAAAGAATAGGAA
AGAGTAGGCTGGAAAGAGTGGCAAGATCCGTAGGTCAAGAATAGGTATAAAGATCCAGACTGAAA
GAGTGTCAACTTACGAGTAGGTCTCAACTTACGTTAGACAGAAAGACAAGAAGAAAAGAGTTTGA
ATCGGGTAGAAAAGCTAACTACAGAAAGCGGAGAAAGTCCATAAAAGCAGTCAAGGTTCATTAGA
CGGACGACAAGAGGAAAGGGTAGATAGACAAGAGTAGTCAGACGGACAAGATGGTAAAGAATTCT
ACTAGCTTGTTGGGCGAATGAAAGGGAGTGATTTCACTACATTACACTTACGCCCCAGACTATAA
GAAATAGGCTAGGCAAGGGTAAAGTGAAGCTTCCATTCCAGTGAAAAAAGCAAGAAAACTTCTTT
CAATCAAACTACTCTTAATGAGATTAGGATCGATAAACTAGCTGG
Found at i:925740 original size:18 final size:19
Alignment explanation
Indices: 925699--925740 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
925689 CTTCCATTCC
*
925699 TTTACCAATTTCTGTGCTTA
1 TTTACCAA-TTCTGTACTTA
*
925719 TTTACCAA-TCTGTACTTG
1 TTTACCAATTCTGTACTTA
925737 TTTA
1 TTTA
925741 GCAGCGGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (19 bp):
TTTACCAATTCTGTACTTA
Left flanking sequence: Indices 925199 -- 925698
TTTCTTTCGATTCAGAACTTCCATTCTCCACACAAGAATTCGTTCGGTGGAAATCATATATGAGA
AAATCTTTTCCATCGGCTTTTCTTCCAAGAAGAAATAAGTAAGAGAAAAAACGACTATCAGTCAC
AGAAAGAAGAGATGAAAGGAAAGGAACAAGACTTATTACACCAATGACTGATTCAACAGAAACTG
GAACACAGCGATCAGAAGCAGTGAATTCATTCCTAAAGGGAGAGAGAAATTCGACTCGTGATTTT
CCATCTCTGATCTATTGGCTTTCTTGTAGAAAGTTCCTCCTACGGCAGTGATCCAACAAGTTACA
AGGAAAGAGAATAAGGTATTTTTCTTTCCAATCTTTCTTCTATATGATGAGTGCTAGTGCTAGCT
GCCCTTATGGGATTCCAGCTTGGCTTAGGGTTTGACTAAGAGCTGGCCTTTTTCTATCTGGTAAG
GGTGGTTGAATGGCTCAGAGAAGGTGCAAGATGTGCTTCCATTCC
Right flanking sequence: Indices 925741 -- 926240
GCAGCGGGCTTCTTTCACTCTTATTTAATATTAAGTGTTTTAATAAGAAATGATGTAGTTGTAAG
ATCCTCCTTCTACTCCCTCTGCTTGGAAATAAGTGTCGGGTGGAAGGGTCAGATTGAGAAAGAGA
GGGTACGTAGAGGGGTCAGAAGTAGCGACGAGTTAAGTTAATCAAAAGTAGCAAGTTTGTTCCGT
AGGCTTTCGTGAATGGGGCTCATGACTTTCGAAGTAGAAATCACCCGGCTCTGATATGTTCTTTC
TAAAAGGGATCATATTGACCCTATTCTTAGACTATGGAAGAAGACTGCTGGGTAGAACACGCTTT
TAGCCCCTGCTTTTTCAGTGCTGTTTCCCGGTCGTCCAATGGTCTTTAGTCGTTATTAAGCCTGG
TATGGCTCCGCCCTGTGTCCACAATTCCAGAACTTCAATCCAGGATCATGCCTTGGCTTAGTTCA
CATGTTCCTGCTTAGTTCGCATTCCGGGTATGTGGCAAGCAAGCA
Found at i:932311 original size:15 final size:15
Alignment explanation
Indices: 932291--932320 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
932281 GCGCTTGGAG
932291 TGCTAGTTGACTATT
1 TGCTAGTTGACTATT
932306 TGCTAGTTGACTATT
1 TGCTAGTTGACTATT
932321 AATGCGAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (15 bp):
TGCTAGTTGACTATT
Left flanking sequence: Indices 931791 -- 932290
TTTCCGTCTAATGGGTTTTCAATGGGTTCGAAGGTATTTGGGGAATCATCGCTACTTGGTTGAAG
CCCCTAGTGCATGGCGTGCTGAATTTCTTCCTCCGGGAGCGTTTTTCTACTTATATATAAGTAAC
TCCTTTTCTCCCGGCCAGGTGGACTGTCCTTTCTGGATTGCTCTTTAACCGATGGAGATGATTTT
TCACATGTTCACTAGCACAACCTATCCCTTGCAGTCCTAATCGAATAAGGCTCGACTTAACCCAA
CAACCAGCCTTACTTGCCTATGAAATCATCATATATGACAATCCTAAGGGAATGCAGCGAGGCCA
CCTGCTCTACTGTCCTACGTTATTCGTGTTAAATAGCTGACCTCCGGCTTTCGAGACAGATCTCG
TCACCACACGCTCAACCAACTCGGCTAGACATTCAGTAAGGTACCTACTCCTTCAATTGCAATTA
GAGTTGCCATGAAAACCAGTCTGCTAATCAGATAAGCGCTTGGAG
Right flanking sequence: Indices 932321 -- 932820
AATGCGAGTGTACTATTCAAAGGGTGTTTTGCGGGGTTACAGTTGGAGTCGCTTTTTTTGGTGCA
AAAGGTTTTTGCTTCTTTGCTGAACTAAAAGGATTTGCTGTAAATGAACCTAATGTTGGAATTGG
AACCTACCCTCTTGTATTATAGATAGTGCCTTGGGAAAAGGTTTTCATTAACCTAGTAAGAATGT
CCATACCTCGAGCACCAACCAATAAGATCTAACAAACTAGGCTGTGGTTGGAACAATGGTAGTTC
ATGCCACATACAAGTATCTTTCCCTAACTCATGCGGTTTTTGAACCAATATAATATTATTTAGTT
TTCCACTTTTGTCGCTTTTCGATAGTGAGTGCTACTACAGAGATTGTGTGTTGTAAACTCTCACA
GGTCATAACACAGATAGGGGGGGGTCGCCTCACTGGTCGAGGCGCCCAATCGAATACGGGCCCGT
CCTCCGTGTATGCAAGTGCCACTCATCACATTGCGAGCTGGGATG
Found at i:961261 original size:15 final size:15
Alignment explanation
Indices: 961241--961270 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
961231 TTCTTTCTAT
961241 ACTCTGGAAAGTAGC
1 ACTCTGGAAAGTAGC
961256 ACTCTGGAAAGTAGC
1 ACTCTGGAAAGTAGC
961271 CGAAAATGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
ACTCTGGAAAGTAGC
Left flanking sequence: Indices 960741 -- 961240
TTGCCTAGTCCGTTACCGTGTTTTACCAGCTTAAGTAGGGTTAGCCAGATAGAGCAGAAGAATAA
GAGTCAGGTTGGTAGTCTCGATAGTGCTTTTAGAGGGATTGGATACTCTTGATTTGGTTCTTCTT
CGAAGAAAGAATTACATCAAACAGGTACTCTTCCGTGACGAAGGATTATAGACTCTATGTGTGCA
AGAGTATTCGTGAGAAAAGTGACAAGCTTTTTTCTTTTGAAAGAGGACGTGGTCACTCCTATCTC
GATATATTCTGTTACTCAAGCACTGAATGGCACTCTTTGGAAGACCAATGCATCTTTCTGAATCC
ATTAGTCCGGATCTCTCCGCTTTGTGAATCAGAGAGTTTTTCACAACATCCCTTATATATTTTCT
TGTTAATTTAGGTCCTTGGGTATCAGACTCGTCTCTCTCAGCATTTTGATTTTCTTCGTTTTGAT
GTACTCGAATCTATACTCTGGTTTTTTGTACTATCTTCTTTCTAT
Right flanking sequence: Indices 961271 -- 961770
CGAAAATGCTTAGAAAGCGATGGGTAAACTAGATTTTCTTTAACAGATACATAGAAATGTCTGGT
GTCTTATATAACAGAAATGTATGTGTTTTTATATCAAAGAAATGTATGTGGTCTGATATCTACAT
ATCTCAACATATTTTGCCAGCTTTCATATTTTGCCTGCTTTTATGAACAAAGAAAACAAGTCAAG
TATCACTAGACAAGAATAATAAGAGAAAGATAAGTCAGATAAGAGGCCAAGATTAATAAGAGGCC
TCATTGCGGCTATATTCATCCTGTGACATTCCTGAAATTTTCTATTCTATATATCATATTTTGTT
TTCAACGCTTATTTTGAAATAATTAAGTAATCCATCTATATCATTGGCAAAACGTTTTCTATCTG
AGTCTATGTGGTAAAACAGTGGTGGTACACCCCTGGCGCATCAGTCAATTTCTTTTTTGACTCCG
CCCCGTGACATTTGCAGAAAATTCTGGTATATAAGATCCATGAAA
Found at i:961394 original size:25 final size:26
Alignment explanation
Indices: 961323--961395 Score: 80
Period size: 25 Copynumber: 2.9 Consensus size: 26
961313 ACAGATACAT
*
961323 AGAAATGTCTG-GTGTCTTATAT-AAC
1 AGAAATGTATGTG-GTCTTATATCAAC
* *
961348 AGAAATGTATGTGTTTTTATATCAA-
1 AGAAATGTATGTGGTCTTATATCAAC
*
961373 AGAAATGTATGTGGTCTGATATC
1 AGAAATGTATGTGGTCTTATATC
961396 TACATATCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
25 37 0.93
26 3 0.08
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (26 bp):
AGAAATGTATGTGGTCTTATATCAAC
Left flanking sequence: Indices 960823 -- 961322
TCGATAGTGCTTTTAGAGGGATTGGATACTCTTGATTTGGTTCTTCTTCGAAGAAAGAATTACAT
CAAACAGGTACTCTTCCGTGACGAAGGATTATAGACTCTATGTGTGCAAGAGTATTCGTGAGAAA
AGTGACAAGCTTTTTTCTTTTGAAAGAGGACGTGGTCACTCCTATCTCGATATATTCTGTTACTC
AAGCACTGAATGGCACTCTTTGGAAGACCAATGCATCTTTCTGAATCCATTAGTCCGGATCTCTC
CGCTTTGTGAATCAGAGAGTTTTTCACAACATCCCTTATATATTTTCTTGTTAATTTAGGTCCTT
GGGTATCAGACTCGTCTCTCTCAGCATTTTGATTTTCTTCGTTTTGATGTACTCGAATCTATACT
CTGGTTTTTTGTACTATCTTCTTTCTATACTCTGGAAAGTAGCACTCTGGAAAGTAGCCGAAAAT
GCTTAGAAAGCGATGGGTAAACTAGATTTTCTTTAACAGATACAT
Right flanking sequence: Indices 961396 -- 961895
TACATATCTCAACATATTTTGCCAGCTTTCATATTTTGCCTGCTTTTATGAACAAAGAAAACAAG
TCAAGTATCACTAGACAAGAATAATAAGAGAAAGATAAGTCAGATAAGAGGCCAAGATTAATAAG
AGGCCTCATTGCGGCTATATTCATCCTGTGACATTCCTGAAATTTTCTATTCTATATATCATATT
TTGTTTTCAACGCTTATTTTGAAATAATTAAGTAATCCATCTATATCATTGGCAAAACGTTTTCT
ATCTGAGTCTATGTGGTAAAACAGTGGTGGTACACCCCTGGCGCATCAGTCAATTTCTTTTTTGA
CTCCGCCCCGTGACATTTGCAGAAAATTCTGGTATATAAGATCCATGAAACCAAAACCATCCATG
AAAGAAGTGTAGTCATCGATAAAGAAAATTGTATGGAGTTTTGGCTTAGGTTATGTAGAAAGCCG
GTGCATGTGTACAACATTGAGGTGTGCTCTATAGAATGTATTTAG
Found at i:961430 original size:17 final size:17
Alignment explanation
Indices: 961408--961441 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
961398 CATATCTCAA
961408 CATATTTTGCCAGCTTT
1 CATATTTTGCCAGCTTT
*
961425 CATATTTTGCCTGCTTT
1 CATATTTTGCCAGCTTT
961442 TATGAACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.50
Consensus pattern (17 bp):
CATATTTTGCCAGCTTT
Left flanking sequence: Indices 960908 -- 961407
ACGAAGGATTATAGACTCTATGTGTGCAAGAGTATTCGTGAGAAAAGTGACAAGCTTTTTTCTTT
TGAAAGAGGACGTGGTCACTCCTATCTCGATATATTCTGTTACTCAAGCACTGAATGGCACTCTT
TGGAAGACCAATGCATCTTTCTGAATCCATTAGTCCGGATCTCTCCGCTTTGTGAATCAGAGAGT
TTTTCACAACATCCCTTATATATTTTCTTGTTAATTTAGGTCCTTGGGTATCAGACTCGTCTCTC
TCAGCATTTTGATTTTCTTCGTTTTGATGTACTCGAATCTATACTCTGGTTTTTTGTACTATCTT
CTTTCTATACTCTGGAAAGTAGCACTCTGGAAAGTAGCCGAAAATGCTTAGAAAGCGATGGGTAA
ACTAGATTTTCTTTAACAGATACATAGAAATGTCTGGTGTCTTATATAACAGAAATGTATGTGTT
TTTATATCAAAGAAATGTATGTGGTCTGATATCTACATATCTCAA
Right flanking sequence: Indices 961442 -- 961941
TATGAACAAAGAAAACAAGTCAAGTATCACTAGACAAGAATAATAAGAGAAAGATAAGTCAGATA
AGAGGCCAAGATTAATAAGAGGCCTCATTGCGGCTATATTCATCCTGTGACATTCCTGAAATTTT
CTATTCTATATATCATATTTTGTTTTCAACGCTTATTTTGAAATAATTAAGTAATCCATCTATAT
CATTGGCAAAACGTTTTCTATCTGAGTCTATGTGGTAAAACAGTGGTGGTACACCCCTGGCGCAT
CAGTCAATTTCTTTTTTGACTCCGCCCCGTGACATTTGCAGAAAATTCTGGTATATAAGATCCAT
GAAACCAAAACCATCCATGAAAGAAGTGTAGTCATCGATAAAGAAAATTGTATGGAGTTTTGGCT
TAGGTTATGTAGAAAGCCGGTGCATGTGTACAACATTGAGGTGTGCTCTATAGAATGTATTTAGG
CCCTGCTTTGAAACGTATGTATGACTTCGGCGTCAAGCATGCTTC
Found at i:962279 original size:17 final size:17
Alignment explanation
Indices: 962257--962290 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
962247 TTTAGCCGCA
962257 GTTGTAGCCCTAATTGC
1 GTTGTAGCCCTAATTGC
*
962274 GTTGTAGCCCTCATTGC
1 GTTGTAGCCCTAATTGC
962291 TAAGAGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.26, G:0.24, T:0.35
Consensus pattern (17 bp):
GTTGTAGCCCTAATTGC
Left flanking sequence: Indices 961757 -- 962256
TAAGATCCATGAAACCAAAACCATCCATGAAAGAAGTGTAGTCATCGATAAAGAAAATTGTATGG
AGTTTTGGCTTAGGTTATGTAGAAAGCCGGTGCATGTGTACAACATTGAGGTGTGCTCTATAGAA
TGTATTTAGGCCCTGCTTTGAAACGTATGTATGACTTCGGCGTCAAGCATGCTTCGCTCGATACT
AGCATAAACAGAAGTTACAGAAAATGCAGGGACCCGCGTGCACAGAAGTGAAATTCATTAGCGCT
AGCTTTTGAAACTATTTGCTATCGCTGCGCCCTTTCTCATTCTTTTCAGGTTGTTCTGGTATCAA
GGGCTATGCCACATACCTAAGGCTCGAAGAGTGGCGTATTTCCAGTTCCACTTTCACAGAAAGTC
TGATTCCCACGTATTAGACATTGGTTTTTTCTTCTCCTCCGAGCCTATGTTTACCTTCAGGCTCT
CTTTCGATACCGAGAAGACAGATTTATTAATTTGTTTTAGCCGCA
Right flanking sequence: Indices 962291 -- 962790
TAAGAGTATAGCGTGGAAAGCTTTTCGGTGCATTGTATGAGTTTGATCATCTCGCCTGCCTTTCA
GCTTGAGCGCTTGAAAGAGGTCTTGGAATTGGCATTCCCGCTGCTAGGATAGATGCTCTTTTTCT
TCTTTAGCTGGAAGCACTAATTTCCATAGTTTCAGAAGTTTCCTTTATCCCTTATAGTGGAGAGA
GTCACTCTAGTGGTCTGCCCCTGTCACTCTAGGCTTTCAAGAAAGAGTGAAATTCTCTTCTTTCT
CTACCCTATACTCATATGGCGAGAAAAGTCAGTCCTTATAGTCGATTGGATAGTTTTCTCTCGAG
AAATGTAATGTAATTAGAGAAGGCTGTGCTTCTTCCCCGGCCCGATCTATCTCTCCATAACACAT
AGACCCGTGACTTATCATACCACCTATACCACTCTAAAGCTTACCCTTGCAAATGGAAGAAAGTC
AACATCGATCCTACCCGGTACGTCTTTGTCCTTATTCCAAGGGAG
Found at i:971522 original size:13 final size:13
Alignment explanation
Indices: 971504--971542 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
971494 GTTATATATC
971504 ACAAGGAAAACAA
1 ACAAGGAAAACAA
971517 ACAAGGAAAACAA
1 ACAAGGAAAACAA
* *
971530 GCAA-CAAAACAA
1 ACAAGGAAAACAA
971542 A
1 A
971543 AAACCATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.69, C:0.18, G:0.13, T:0.00
Consensus pattern (13 bp):
ACAAGGAAAACAA
Left flanking sequence: Indices 971004 -- 971503
GAAAAGCAGAGTTCAGCTCCCCTCCTCACCACTTGAAAACAGAGCTTGGATAGCAGTCTTCTCTC
TTTATAAACCACCGGTTACTCGGAACGTGAGTGATTCCATTTCAAGTCCTCGCTCGCCCGGTCTT
TCATCAGTGGTGGTTCATTACTGATAGTCTGCTCTTTCTTGAATAGTAGTCGTCAGCTCTACCAT
CCATATTTGAGTAGCTGTACTTTATTTTCAATAGGTTCGTTCATTATGTTGTTCTGTTCTTCCGT
GCAATCATAAGCTCTGTCATTCCCTCCATTCCGCCGCTTTCTTTTCCAACTCTATACTTCCTTGG
TCAAAGTCAGACCTGTGTCACGCTTCAAAAGGGAAGACCTTCAAGTCGTAGCAAGTGATAGCAAT
CCAGCGTTCATTGGTAATAGAGAAATCACCTTATTAGCATGGAATAAAGGAATCTCACTCGACGC
TCGGTCGCTACTCATTCCCCGCTCCCTCGGCCTATGTTATATATC
Right flanking sequence: Indices 971543 -- 972042
AAACCATTAATTTCATAAATGACGCATCGAGATTGCCATTTCACGTGGGCCTAGATTAATCAGTT
AGAATCTAACCTGCGGGAAAGGGACGACGGGGGCGGTGCCATGCCTGGAACGAGCCTATTAATCT
TTTGACTCAACCCGGGTCAGGGGTTGGAGTAAGTCGCGTCCTAACCAACGAGTAACAACTCACAA
TACGCGTGCTTCCTGCTATACCAGAGGGGACGGTTCCATACTTGTAAAAGACCATGTACGATTAT
CCTTTTCAACTACTCTTGCCGAGGAATGCATTTATTAATGAATTCATTCTTTTGTAAATCCTTAA
CTTAGTTCAGCTACCCCCTTCGGGGGGAAGAGCGACAAGGCGAAGCCCGGAGCGAAGGGGGAGGA
GCAAGGGAGTTCCTGACACGAATTTTCAAAATAAAGAAAACATTATGGAAGAGTACTTAATCCAT
TCGAAGTAATTCAAAGGAGAAAGAAACCAATTCTCATTAGTATGC
Found at i:977090 original size:6 final size:6
Alignment explanation
Indices: 977079--977103 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
977069 AACAGGGCTC
977079 TGATAA TGATAA TGATAA TGATAA T
1 TGATAA TGATAA TGATAA TGATAA T
977104 AACAAATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (6 bp):
TGATAA
Left flanking sequence: Indices 976579 -- 977078
CCATTTATAAATAGAGACGATTGTTACTATACTGATACTGACTCAATAGTTCTTAGTAAGCCACT
ACCTGAAGACATGGTTTCTCCAATGGAGTTGGGTAAGTTGAAAATGGAACATTTCGTTACGGAAG
CTATCTTCTTATCTCCTAAAAGTTATTGGCTCCATGCTGATGGAGAAGATATTATTGTTCACAAG
GGGGCTCTTAAAGATTCTGTTTCCGCAGATGGGTTTATTAACCAATATGCAGATCCATCTATAAG
AAAAACGATTGTGGTGACAAACCCCTTCAGATTGAACTCTAAAGCATTCACTATCCGTAAGCAGC
AATCTGAATTTACACTAACATTACCCGACTCTACCAAGAGAATACGCATTCATAATGAACAAGGT
ATGTGGGTAGATACCAAACCTTTGCATATAAATGCTATCCCAGGACTATCTGATTCTACGCAAAT
ACTAATAGAATCATTATTGGATAAAATAGATGATAAACAGGGCTC
Right flanking sequence: Indices 977104 -- 977603
AACAAATAACAACTCCACCAATAGATAGAATTGCCTAGTGGTATCCGGCATGCATCCCCTTCTGA
TGAGAAGGTACAAGTTCAAGTGAGATGTTATGAGAATAAAATAACGAGTAATCTTACTCTAGATT
AGAATGAAATCCTGTAACCAAGAAGAATGAAAGCTAGCTGCCCAGTAGTAGTGAGTAGCCGTTTA
CGGAGTCGGGGGTATTAGAAGGCCGGAAGTAGACTCAAAGACAGAAATCGGATTCGTCGCTTGCA
GTTGGCGCTTCCCTAGTTTGAGTTGTACGAAAGAAGCATGCAAAGAAGAGTTCAAGTCAGAGGTA
AGATTCCCAGGGAGGCAGTAGTTTGTAGTTTCTATAGTAGTTTGTAGTATCCCTAGTTTGACCAA
GTAGAAAGCCAGCGAGAAGACTTTCAATAGAAAATCAGACTCCAAGTAAGCTGTTGTATCTACTG
TATTTTCCAGATAGACTGAAAGTCAAAAATCAGAATTGAGTAGGC
Found at i:977485 original size:19 final size:19
Alignment explanation
Indices: 977445--977485 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
977435 CCAGGGAGGC
* *
977445 AGTAGTTTGTAGTTTCTAT
1 AGTAGTTTGTAGTATCCAT
*
977464 AGTAGTTTGTAGTATCCCT
1 AGTAGTTTGTAGTATCCAT
977483 AGT
1 AGT
977486 TTGACCAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.46
Consensus pattern (19 bp):
AGTAGTTTGTAGTATCCAT
Left flanking sequence: Indices 976945 -- 977444
ATACGCATTCATAATGAACAAGGTATGTGGGTAGATACCAAACCTTTGCATATAAATGCTATCCC
AGGACTATCTGATTCTACGCAAATACTAATAGAATCATTATTGGATAAAATAGATGATAAACAGG
GCTCTGATAATGATAATGATAATGATAATAACAAATAACAACTCCACCAATAGATAGAATTGCCT
AGTGGTATCCGGCATGCATCCCCTTCTGATGAGAAGGTACAAGTTCAAGTGAGATGTTATGAGAA
TAAAATAACGAGTAATCTTACTCTAGATTAGAATGAAATCCTGTAACCAAGAAGAATGAAAGCTA
GCTGCCCAGTAGTAGTGAGTAGCCGTTTACGGAGTCGGGGGTATTAGAAGGCCGGAAGTAGACTC
AAAGACAGAAATCGGATTCGTCGCTTGCAGTTGGCGCTTCCCTAGTTTGAGTTGTACGAAAGAAG
CATGCAAAGAAGAGTTCAAGTCAGAGGTAAGATTCCCAGGGAGGC
Right flanking sequence: Indices 977486 -- 977985
TTGACCAAGTAGAAAGCCAGCGAGAAGACTTTCAATAGAAAATCAGACTCCAAGTAAGCTGTTGT
ATCTACTGTATTTTCCAGATAGACTGAAAGTCAAAAATCAGAATTGAGTAGGCGTTTCGATAGCT
TTAATAGTAGGGTTTAATTCTGGCAAGCCGGATATAAGGTTTATAGTTAGCATACCTAGTCGTTT
ACAGAGTATTAATAGTTTCTATCAGCTTCTCGTGTAGCAGGTAGTTTCTAGTGTTAAAGCCGTTA
GAAGATTCCAAGTATTCTCTAAGAATAACAGTCTGTTTGAAAGCGAGCTTTTAGCTCGGTAGTTT
ATACAGTTTTAGCTAAGAAGATGAAAAGTAAGCCATAAGATTAAAAGGAGGATATGAGTGAGAAA
GTCGTAAATCGCCTTGCTTCTCGTGATTCTTGTTATCGTATCCATGGGCTTAGAAAGCAGTTGTT
GTTAAGATTGCTTGTTGTATTCGATCTGTCTTATCAGGTTTCGTA
Found at i:989851 original size:18 final size:18
Alignment explanation
Indices: 989828--989865 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
989818 TCTGCCACTC
989828 CTCTATCTTTAGCCGAAA
1 CTCTATCTTTAGCCGAAA
* *
989846 CTCTATCTTTGGCTGAAA
1 CTCTATCTTTAGCCGAAA
989864 CT
1 CT
989866 TCTTCCTCGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (18 bp):
CTCTATCTTTAGCCGAAA
Left flanking sequence: Indices 989328 -- 989827
TATCAGATTTCAGAGCAGGGAATAAGATTTACAGCACGACATCAAGTTTCACGCACGGTATCAGA
ATCGAAGTTCAGAATTGTAGTAGTGACTCGCCGTTTCGTACCATGCTAAAGGAAGCTCTAAAGAC
AGATTCATTTAGTCTTGGATGTTATCCCTGGGCAAGGGGCAAAGGTAGGGCATCTCATAAATCGA
TATAGTAGCGGTTGGCCCATAACCAAAGCAGCTAGCGGATAGTCTAGTTCAGTAGCGGAAGCAGT
GAAGGGACGCTACTCGAAAAAAAGTCTTGGAGGAAGATCTCTCGAATAAGAGGTTCAGTGGTATA
GCTATTCCTGGCTGAAACCACAATATTCTCTGATTCTAATCGATTCTTTCCTCCCCCTACAAAAG
AATCCTCCGACCGGAACATACGCTGCAGGAGAAGTAGATCTGCTTCTTTCCTCGGGGTACTAAAC
AACTATTTGAATTAAATCAATCAGCCTATTCTAGGTCTGCCACTC
Right flanking sequence: Indices 989866 -- 990365
TCTTCCTCGCCTTAAGCCCAGCTAGGAAGAAGCTTGGAACAGTATGGAGAACTATGAACAGTAGG
GATGAATGTTCATTCATTGAATAAAGTAAGTTTTTTGATGTCGGACATCATAGAATCAGAAGCAT
CTTCAAATCAGAAGTAAGTTCCACTAAAAAGACTCCCAGCCTTTGCAAAAGAAATAGTACTCCTG
TTTGACCCGGAAAGAGAAAGAAAACAAGACTTAAATGCACTCCAACGCTTTGACTAAACCAACTC
TGTATCAGTGCCAGTACTTTACCTTACGTACAGTAAGTCAGGTATTAAATCTAAATAGAGTTTCG
AACTTCGCTGTCGATACAAAGCAGTCATCGTTAATGCGAAGAAGGTATGAAGCAAGACTCGGTGC
AAATAACAAGAGTGGAATTCACCCACTATTGTAGTGCAAGTACGTAACTGCATGCATCAAAAAAC
ATATATATATATCCGACTCTGGGCTTTGTTATAGCTTCCATAGCA
Found at i:992030 original size:15 final size:15
Alignment explanation
Indices: 992010--992039 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
992000 TTTGGTTTCG
992010 GAATATATTGACTTA
1 GAATATATTGACTTA
*
992025 GAATATATTTACTTA
1 GAATATATTGACTTA
992040 TAAAGAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (15 bp):
GAATATATTGACTTA
Left flanking sequence: Indices 991510 -- 992009
CATTGACTTTTCATATTGTCTCCAGGGAATTTGACATGGAATCAGAGTATTTTCCTACCAGGCTA
GTGCATTTAGAAGATTGGAGAAAAAAGAAGTTAATTACTTTCATTCCCGAGACTTTCCCGATACT
GGCATTCCCTATACCTATAATAGTGACTTGGAGAATTTACTAGGGCCCGGAGTGAGTGTTTACTT
AAGCTTTTCCTACTCGGGTTGAAGTGGGAGAATTCCCACCCAGACTGACAAGATTTGCCTGCCTG
ACTCACAGAAGATTTTACTCACGAATTGCATTGTTTCTGAGTTAATTACTTGCATTTCCCCAACT
ATTTGACTCTCCCGAGAAAAGTTATAGAATTGCCTGCCAGCGAGGGAGAATGACTTGATCCACTA
GCGTTTCGGCATGGAATTTCTAGATTCCCCGGGTACTTTGTCTTTTTAGGAGAAAACAACACGAA
TTACTAGATTTGTCCAACTCTTCTTCCCCAGAGACTTTGGTTTCG
Right flanking sequence: Indices 992040 -- 992539
TAAAGAGGATTGCGCCGGGATTCATTGACGAAGAGATATTTCCTTTTGCATATTCTCAGAAGAGG
AGGCAGGCGGCGAGGATGGTTTCATCGCTCAATCCGTCTTACCTAGTCAACAAGCCAAAGGTCAA
CCTTTACACCACACCAAAGAAAGAGGCTGAGCTTTTGAGAAAAAAAAGAAAAAGACATCTTTCAT
TTCCATACAAGAGAGTCAACCGTCTCCTAACATAGAATTAGTAAGGGAACGATTATAGACGAGAT
ATTTTCACTATATCCTGAGTTCAATAGATCTTAGAAACCGGAAGAACGAAGTATATATTGGAAAG
AATGGAACCCTCAAGCGCAGCCCAAGTCTCTCTTGCCTTTCTATTTACCATTTCAGTTCATCATG
CTGTCCAAGAAATTCGATATAGAAAGAGAACAGATGGTTGAAGGATTATTATGGTTCATTAAATG
AATCTATCTCTTTCTCGCTCCTTCTAGCTTCTTCTCTCTTATTCT
Found at i:1021086 original size:31 final size:31
Alignment explanation
Indices: 1021048--1021109 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
1021038 TCCATCCCCA
1021048 GCGAGTAACGTATAATGTTACGAGTGAAAAG
1 GCGAGTAACGTATAATGTTACGAGTGAAAAG
1021079 GCGAGTAACGTATAATGTTACGAGTGAAAAG
1 GCGAGTAACGTATAATGTTACGAGTGAAAAG
1021110 CGCTTCGCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.29, T:0.23
Consensus pattern (31 bp):
GCGAGTAACGTATAATGTTACGAGTGAAAAG
Left flanking sequence: Indices 1020548 -- 1021047
AAAGTGCCAAACATTGGGAACAACCCAGGAAAGAGTTAGGAAAAGGAATAATACGCAGCAAGAAG
CACTGAAATAGAGGAATCGATTGTATTTCCTCCTTTGAAAACCATAGCAACTGGGTATCGAAAAG
CACCAAATTTGATAACTGATGAAGGGAAAGACGAAGGAAGAGCATGCTATTGAAGACGTTGCAAG
ATATGTAGATAAGGCCTCCGTTAATTGTGTACAAACAAAATACGAGTCCAAAGGTAGGGTAAGAA
AGGGTTTAGCTAATAAAAATATTAATTCTTCCGAGAACCAGTAACACGTAACCCATGTAAAAGCA
AGACCGCTCAATATCCGAAGGGAACGAATTCGAACTTCTCCTAGAATAGTTTCCAGTGCAACATT
CAATTAAATGAGTGTAATTCAAAGGACAAAAATAACGCAATCTGATGCAAGCGAACAAGATCGAT
CGTCTCTAGTTGTTATTGTCAACTGAAAAAAGAAATCCATCCCCA
Right flanking sequence: Indices 1021110 -- 1021609
CGCTTCGCCCGCCCTATCTATATGCGCGCTGGCAGGTAGGGGCCACTCTATGTGATTCGCTACGC
TTGCTTGCGCCTATCGGCGGACTCTATTGCCTGCCGGAACCCGAAAGGGTGGTAGTACGAATCGC
TACGCTTCTTTATATATGATAATATGCACCCAAAACACATTGATTAGGAATCTTGGAAGGAAAAG
GGCCTTCGCCTTCCTGCTTCTAGCCTTCTTAGCTGCGCTACCCCTTCCCTGTGGTACGTCAAGAG
AAAGGGTTGGCCCATAGGTGAAGCAAAGAAATAAGATTCCCTTACCCAGTTGTGCGTTAAGCGAT
TGCCATTCCAGCGAGTACATTATAAAGAAAGAGGATCGATTCCCCTCCCGAGGATCCGCCGGCTA
TCCAATTCCCTATATGGGTTGGCTATCCTGTTTTCGTCCCGGGTTGCAAAATGCAAATCCTTTGG
TACACAGCTGTGAAAAAAAAACCTTGGGAGGAAAGACGAATCCGA
Found at i:1031819 original size:28 final size:28
Alignment explanation
Indices: 1031779--1031832 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
1031769 GGAGAAATTA
1031779 CCCAGAGGTAAGTGAATAGGATCATATG
1 CCCAGAGGTAAGTGAATAGGATCATATG
1031807 CCCAGAGGTAAGTGAATAGGATCATA
1 CCCAGAGGTAAGTGAATAGGATCATA
1031833 CCCATCTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (28 bp):
CCCAGAGGTAAGTGAATAGGATCATATG
Left flanking sequence: Indices 1031279 -- 1031778
TTATGTTTATGTGTATTCGCATCTTGCAAATCGTGGAGATTGTATCCCAACCAACCGTTCGCTTT
AAAGTTCCAAAGTACCTATAGTAAAAGAATTGTGCTCTATCCAGAGTCTAAACAAATGATCATGT
CTCATGTTTTTCTTTCTTGAAACTATGGAATATGCAGGCACATATTCAAACCTGCGGTGGACGGC
TTTGATAACCGCTGCTTTTTTTTAGGTTCTTCATCTTCCAATATGGTTTTACAAATTGGAAGTGA
GCAAATCTAGCACATCATTGGCGCTATGATATGAACCTAACTCACTGCTTCTTCCCATTTTCATG
GGCTGTGCTAGCTGGGCTATTAGTCATTTTTTTGGTATGTTCTATGTTTATCCCAACTTTCTTTA
CTGCAACTGGAATGGTGATTCTTTTTCTCATCTAGTAAGAATCAAACTTCAACTGGAATTGAGAT
TTTTTGCATCACACAACCGCAAAGGAGGATGGGGTGGAGAAATTA
Right flanking sequence: Indices 1031833 -- 1032332
CCCATCTACTGCCTAGAAGGGTGTAATACCAAATGAACTCTGAAAATTCGTATTGTACCCACAGT
GAAGCTAATGCAAGCCAACTCAGGTGTGTTTCTGTTGAAATGCCATGCTCCTGAGCCTTGCACAC
ACTGATTAACACGTTCACTCTGTCGCTTTTAGGATGATAGGGAGTGGACATCTAATATGGTAAGC
CCTATTCTTTCCAGAATTGCTCTACAAAAATAGCTTTTTCACACGCAGATCTGTGACAATATCAC
ATGGCAGCGCAATAAAAATGGTAACCAACCGGATGAGAGAGAGAAAATGGGCATACTTTGAGAGC
CTATCAACTACAGTTAGAATGAAATATCCTCCCTCATTTTTTGAAGTCTATTATGAAATAGAAAG
ACTTTGCCTGTATGGGTAAGGGCACATGCTCACCTTTGGTTAGTTCACATACTCTCACATAAATG
TGCACCTTCTCCTTAATACGTGGCCCATAGAACAGTGCCTTTACT
Found at i:1042372 original size:21 final size:21
Alignment explanation
Indices: 1042348--1042388 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1042338 ATCGGGTGTG
1042348 AAGTAGAAGAAGAAAGAGCAT
1 AAGTAGAAGAAGAAAGAGCAT
* *
1042369 AAGTAGAAGAATAGAGAGCA
1 AAGTAGAAGAAGAAAGAGCA
1042389 CTTGCTTCGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.05, G:0.29, T:0.10
Consensus pattern (21 bp):
AAGTAGAAGAAGAAAGAGCAT
Left flanking sequence: Indices 1041848 -- 1042347
TACCTTACTAAAGCCCCAAGAGCGAGAATTCACGAAGGTAAGCATTGCTTCACCAACCAATGGGT
CAAATCACTTTTGATTTGCGCTAAGGCCACTCTCCCACCCAGGAAGTAGGGGTTTATGATCGAGT
TCTTTGATATGATAAAGCAGATTTCAGAGTGTGAGGGAAGAAGTAATTCCAAGATGTCGAAATAA
GCGATCCAGCCACCCACCCATGGGAAGGATTATCTCTCTCCTTACTACCTACAGGTGAAGGAGCG
AAAAAGGAGATCAAGGTGAATTAAGCCTAGCCCATGTAAGGTGTTTAAAGAAATGCCTAGGAAGG
AAGAATATTCTAACATTTTGGAGCATGATCCTGGTTCTGCTTTCCGCTGCGCGCCTCGATATTTC
TTTCTTGGTTCGACACTTTTGTGTGTCTCGGTGTCTCCCCAAGAACTTTGTATCTAGCCTTCGTC
GTCTCGACGAAAGAAAGCGCAATAAATTGAATGAAATCGGGTGTG
Right flanking sequence: Indices 1042389 -- 1042888
CTTGCTTCGCTACGCCCCTTCCTTGTTTGATGTCTTACGGATTCCAGATTCCCAGCCAGACGGGA
TTATATAAAGGAGTCGAAATGATAGGTCCGTGTAGCAAATAGTTTGTTAGGTAGCAGAAGTATTA
GAATCCGGAGTATGGTAGCTATTCTGGTAGCATTATAAATAATTTCTGTACAGAAGGTATCGAAA
GATTGAACTTTGGATGTCAAGACTCTATACCATAAGACTTTTAGTTAAGTAGGTAGTGAGATTGA
AGGAAAGAAGGAGAGTACTGAGCAGCAGCTATGGCACAGTCAGTAGGTAGCGGCATAGACTAATT
AGAGTAACACTTAGTGAAAAGTGAGTATTTATGATGCTTCACGTCCGGGTGGGTAGCATGAACCC
ATGCTTCGGTCTGTCTACCGCTAAAAGAATGTCAAAGATGGATTTTCGAGTTTGTCCTTCGCTCT
CTTATATTTCTCTATATATTATTATATCCTACTCTTCTACAGCAT
Found at i:1043038 original size:34 final size:34
Alignment explanation
Indices: 1042990--1043058 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
1042980 GCAGACTCAT
1042990 AGAAAGCAGAGTAGAAGAAAGGAACTGCAGGAAG
1 AGAAAGCAGAGTAGAAGAAAGGAACTGCAGGAAG
* * *
1043024 AGAAGGCAGAGTAGAAGACAGGAACTGCAGTAAG
1 AGAAAGCAGAGTAGAAGAAAGGAACTGCAGGAAG
1043058 A
1 A
1043059 CAAGAAAAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.48, C:0.10, G:0.35, T:0.07
Consensus pattern (34 bp):
AGAAAGCAGAGTAGAAGAAAGGAACTGCAGGAAG
Left flanking sequence: Indices 1042490 -- 1042989
AAATAGTTTGTTAGGTAGCAGAAGTATTAGAATCCGGAGTATGGTAGCTATTCTGGTAGCATTAT
AAATAATTTCTGTACAGAAGGTATCGAAAGATTGAACTTTGGATGTCAAGACTCTATACCATAAG
ACTTTTAGTTAAGTAGGTAGTGAGATTGAAGGAAAGAAGGAGAGTACTGAGCAGCAGCTATGGCA
CAGTCAGTAGGTAGCGGCATAGACTAATTAGAGTAACACTTAGTGAAAAGTGAGTATTTATGATG
CTTCACGTCCGGGTGGGTAGCATGAACCCATGCTTCGGTCTGTCTACCGCTAAAAGAATGTCAAA
GATGGATTTTCGAGTTTGTCCTTCGCTCTCTTATATTTCTCTATATATTATTATATCCTACTCTT
CTACAGCATCATTATTCTTTACCGCTGCGCGCCTCTATCAGCTCCCTTCCAAATTGACTCATTTC
ACTGGATCAGCTACGACCAGGGAAAGCACCGCTCGGCAGACTCAT
Right flanking sequence: Indices 1043059 -- 1043558
CAAGAAAAGCTCTCAAGAAAGGAGAGGCGGAATCAAAGAAATGAAATCGGAAAGCTTCACGAGTC
AAAGTCATAGAAAGCTTAACGAGTCGGGTGTCTGCTAACCGCTACATACCTCTTTATCTCCTTCC
ACTGAGGTTGCGTGCTTTTCGTGGTAGTTGTCTGCGTGGAGCTTCCATTTGTGATACGGCTCGCT
AAAGCTAATAAAGTATTTTCCTGACGTGTTGTTGTGCTTGCTTCACAGTAGTGGCGGAGTATCGA
GTTACCGACAGTAGATGTAGAAGGAAAGAAAGCTTTGAATTTCAGGGGGGGTAGGGCCTGTAGCT
CGTTCAATTGTTAGTCAAAGGAATGGGTTTACCCACCCGGTAATCCAATCCGTTACACGAAAGGA
ATAGCAGTTAAGTACCAATACCAATATCTGTTCAGTAGTTAGCAAGGGCAACCGAGTCAAAACTA
TACTAATCGCAGCCCTTATAACAACTTGAGTTACCAGCAAAGCTT
Found at i:1048305 original size:35 final size:35
Alignment explanation
Indices: 1048233--1048307 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
1048223 TTTGCATTTC
*
1048233 TTTT-TCATTGCTTCGTTTTTCGTAAATAGATTGT
1 TTTTGTCATTGCTTCGTTTTTCGTAAATAGATTCT
*
1048267 TTTTGTCATTGCTTC-TTTTATCGTAACTAG-TGTCT
1 TTTTGTCATTGCTTCGTTTT-TCGTAAATAGAT-TCT
1048302 TTTTGT
1 TTTTGT
1048308 TTTTCATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
34 9 0.25
35 27 0.75
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.57
Consensus pattern (35 bp):
TTTTGTCATTGCTTCGTTTTTCGTAAATAGATTCT
Left flanking sequence: Indices 1047733 -- 1048232
TCTTGCCACATTGTAGCAGCGTACCCTCTCCATAAAAGTACAAGTAAAAGGCCATCTCCGGACCA
TCCAGAAGTAAGTTCAGCACTTAGAAGGGGAAGAAAGCGCTCTTATTTTGTTTACTTGGTCCATT
TGCTATCGCTCTACGAATCCCAGACATACCCCCTCTCATTTCATTCATTGCCGAAAGAAAGAAGA
AAGATAAGAGCTTGAAAACTAGCTTCAATAAGATATGCTTGCCTACCTATTTTCTTGCTCTTTTT
AAAGAAAACGTTGATTGATAAAGCACCGCCTACGAAGCACTCCAATGGCTTAACTCTCTACGGCT
AGAGGAAAGACTCCTACTCACACAATACAACTAGGGGAAAGAGTACTCTCCAATTTGACTCTAAT
GGTTATGGTTATAGTGGGCAAAGCACTTTCTGGTGGAATTCTACGCAATTCTTCGAACTGATCTT
ATTCATTTTGTTAGTACTCAACATCTCTTTTTTTCTTTGCATTTC
Right flanking sequence: Indices 1048308 -- 1048807
TTTTCATTTCATTTTATCTACAATAGTGTGTTTTTTTGCATTTCTTCATAGATAGTGTGTTTTGG
TTGAAGTTGAGCGATTTGGGGATCATTTTGCGAGGCAAGTTGAGTAGCTTGCAGAGGCCGGATGC
GAAGGTGTGTAGGGGCTGGTCTTTAGTCATTAATGGTCGGATTGTAACATAGGAACCCGTTTTTC
GGTATGCGTTGCGACAAAAAAGAACAAGACTCATTGTTTTCCACAGAAGCTGAAATCATGCATTT
CCAAAATAGAATTAGAAACACATTAAACCAAAATGCACGGCGTCTTTTTCTACCTAACGGAACCC
CCCATATGAAATTGACAGACCACTGTAGCTCTATTACCCATTCTAAAATCTCTAGATTATCTACG
ACACGGGTAATACTCTATAAAAATAGATTCCTTCTTTCTAAGATCTCTATTAGGCACCTGTGCAA
TTCTCCAAAAGTGAACTGGAGTAGTCACTATATAACTATTCATGA
Found at i:1050921 original size:18 final size:18
Alignment explanation
Indices: 1050898--1050932 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
1050888 GATCTCCAGA
1050898 TCCGAGTAGAAAGTAGAC
1 TCCGAGTAGAAAGTAGAC
1050916 TCCGAGTAGAAAGTAGA
1 TCCGAGTAGAAAGTAGA
1050933 AGTAGAGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.14, G:0.29, T:0.17
Consensus pattern (18 bp):
TCCGAGTAGAAAGTAGAC
Left flanking sequence: Indices 1050398 -- 1050897
CAAGAGGAAGTCATCATAAAGCATAAGGGAGTGGCTATGGGCCTATTCCCAGAACCAGAACGAAT
ACGCTTGACTCGAACGAGAATGCCAACTGCGTGTGCTTTTGCTTTCTCCGGAACCGAGACCCAAA
AGGCTTTCCTCGAAGAATACGCTTGACTCGAACGAATCGCATTCCTCGGACAATCGATTTGATTC
CCAACAGAAACGATCGATCTAATCTACTTGCTGCTACTGCTATCCTACCAATCCTACCTCCTGGC
ACTTAGGGAAAAGACTATTTATGAGTTTCTTCAGTGCAAATAGAAGAGTGCGCATGCCAGTTGAA
GACTGAAGTTCTCCAGGGCCAACAAATCAAACGGAAATCGATACCCGACGAGTAATTACTAATGT
TACGAGTTAAAAGATAAGTGCCCGGATCTCATCTCATTCCTTGCTAGATAACAAACTGATTCTTT
GACAACTGCTCCTATTCTTCGCTACAGGCAGGCCTGATCTCCAGA
Right flanking sequence: Indices 1050933 -- 1051432
AGTAGAGTGTAGATACTTGATTCCGTTCTAAACCAGTATCGTACGTAGATTCGAAACCTGGATCA
ATAGCGAGCCACGGACTCATACCCAGCAAGAGGCGAGGCTGCGCGTGCTAACTAAACCGGCTTTC
TAGCTATCAAACAAGGCTGGCTTGGATGAAGCGAATGTTGTTGTGAGTAGGCTCTCTTCTGCTGT
TGTGAGTAGGCAGGCTATTATACGGTTCGCTAGGAAATCGCGATCCGGGGCTGATGGGAAGAAAA
AGATGATTGACGACTGGCACTTCCTAGGAAAGCATATGTATTCGTTCTCCTATGTTATTGTTGAA
AGCCACCCAGTACAGTAGTGGCATAAGCTCGGGACTAGCTGCTCTTCTTCTTCAATTCCTAACCT
GACTCGTAAGTAGTGCACTCAGTTACTAGTCAATAGAATCATTAATAAGGATACTAGTCAACTAT
CTAGTCAATAGTGTTTTGTATGGGCGGGAACTAGTCCTATTCGAC
Found at i:1055877 original size:12 final size:12
Alignment explanation
Indices: 1055860--1055903 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
1055850 ATTGTACATC
1055860 AACAACTCCATT
1 AACAACTCCATT
*
1055872 AACAACTCCAGT
1 AACAACTCCATT
* *
1055884 AAGAACTCCATC
1 AACAACTCCATT
1055896 AACAACTC
1 AACAACTC
1055904 ATGCCCTTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.43, C:0.34, G:0.05, T:0.18
Consensus pattern (12 bp):
AACAACTCCATT
Left flanking sequence: Indices 1055360 -- 1055859
AAAGGAAGGTGTATGGAATAATCCCGCGACGTACGGCGATGCCCTTCACATAGCGAATGACCTGC
ACCGTCTAGATATGATGGCTGATTGAGATAGGGGTATCGAGGGCATGTACTCTGCAACCTAATAG
CAGCCCTACCTAAGAAAAGGGCCTGACAACAAGCTGAGTAAGGTGAAGGCCCGCACGCAGCAATG
CTACCAAGCGGAGAAAGGTAGGGTCAACAACGTAAATGCTCCCACTCCGAAGGCAAGTTACTACA
GTTATTTGACTTTTCCTATCCCGAGTCCGATGGCAAGCCCTAGTCCATAGCCTTTCCGAAGCAAT
CCCTATGCCAGAAAGGAGCTTGCCCAATGCCTTACTTGATGACTCAGGTAATGCCCTGACCTTCC
CTATTTGACTACTGTTTTCGCGACTAACGACTAGCCCTAAGCTGATTTATTAACTGAATCATATT
CTCTAACAGTTTCGTGAGACTGTGCAACCATTCCTATTGTACATC
Right flanking sequence: Indices 1055904 -- 1056403
ATGCCCTTAGCGGCCTTACCTACTCTACTTAGTAAGCAAGAAATGCCCTAGTCCCCCTAGCCCTC
TTCTTTTACCATGCAGTTAGCTTTGATCCTGGTATAGCTGGCCCGATCGCTGTCGATGAAGACCT
CGTTCTGGATGTGCCATGTATCACGACTTTCTTATTAATGGAAAAAGACCTCTCGTATAAACGAA
CGAAAGAAAGCCGCCCCCTATTGAGAGGAGTTTACTCATGCTCGTAGGTTCATTCAAGGCTTGAA
TCGATTCTTCTTTTGTTGGGCGAATCCAGTTTCTTACTCTTTTGAAGTCTGGGGAGGACCTTATG
TAGTGAAAAGCAGAAGTATGCCCCCGATTCCTCCAGTCAGTTTGTAGGTAGGTGGTGGAGTCAAA
AGTTTCTAACCGAATGCGCAAGATCAGCTCGGTTGTCTATGTTGATGGTGGATTGCCCATTTGAT
AGGTTGATGAGCGTTATAGGCGCTGCTTTAAGAACAGACTTTTTG
Found at i:1058601 original size:18 final size:18
Alignment explanation
Indices: 1058533--1058603 Score: 61
Period size: 18 Copynumber: 3.6 Consensus size: 18
1058523 TTCGAGTCTC
1058533 TTCCTCTCTGCGTTCGTTCG
1 TTCCTCTCT-C-TTCGTTCG
* * *
1058553 TTTCTCTCCCTTCGGTCG
1 TTCCTCTCTCTTCGTTCG
1058571 TTTCTCTCGCTCTCTTCGTTCG
1 -TTC-CT--CTCTCTTCGTTCG
1058593 TTCCTCTCTCT
1 TTCCTCTCTCT
1058604 CAGTGCAGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
18 13 0.32
19 3 0.07
20 11 0.27
21 3 0.07
22 11 0.27
ACGTcount: A:0.00, C:0.38, G:0.14, T:0.48
Consensus pattern (18 bp):
TTCCTCTCTCTTCGTTCG
Left flanking sequence: Indices 1058033 -- 1058532
GCTGTATCTCTGAAGCAGTTGTTTCTATTCTGAAGCAGTAGGGTTTCTTGGCTTCTGAGCTAGCT
GTCTTCTGTCGTTCGGTTGTCTTTATCCCTTCGGTCGTAGCTCTCCGAGTCGGCATTTCGGCTGC
AGGAATTGCTGATTTGGTAGGCTTTAAGTTCTGTAGCTCTTATCTGAGGAGTTAGTTCCTCTGAA
GCAGCAGTGTTTCCGGAGTTGGTTGTTCGGAGGAGTTGTTTGTTCCTTAGGCGCTGGGTTCTCTG
AGCTAGCAGTGTTTCCCTCCGGGCGTGTAAGTTCCTTGAGTCGAGTCATTCCCTCTCTTCGATCG
GTAAAGTCTCTTCCTCAGGGGTTGCTGTTATGTCTGTAGCTCCGCTCAGCTCCATCGTTCGAGTT
ATTCCCTCTCTGTGGTCGGGAATTCCTCTCTCTTCGTCTCTTCTGTCAGTCGAGTCTGTCTCTCT
CTTTGTTCGTTCTAGCCTCTCCTTCTTCTCGGTGTTTCGAGTCTC
Right flanking sequence: Indices 1058604 -- 1059103
CAGTGCAGTAAGTCAGCTCAGTTGGTTGGCTCGAGTATATCCCTCTCAGTGTTCGGTCTATTCTC
TCCCTCGGTATGTTTCCTCTGTTCCACTCCGTTCTACTCCGTTCTACTCCGTTCCACTCTGTTGC
ACTTGATTTCTGGTGTTTGTTCTTGGTTTTTCTGGGCGCTTCACCTGTTTTAAGAGTAAAGGAGT
AATCCTTGAGTTTGAAGTTGTAGGAGGTGGAGTAAAAACCAGGCTGCTTTCACGGCGAGGAGCTC
CCAAAATAGACTAAGAAAAAGCGTATTTCTCTGTTAATTGGCGTTATTTATTCCTTTCTTTAAAA
CAACGAGGCTTTGATGTCAAGATTATTCATTGGATTTCTCATCTGGGCGCTATTGTATTAATTTG
AATGGTAATTTCACTGCATATCATGAATGTCGCCGTGGACTCAAACAAGGTGACCCCTTCCTTAC
CTCTTTCTCATTGCGGCCGATGGCCTAAGTAAATTGCTAGATCGT
Found at i:1058707 original size:10 final size:10
Alignment explanation
Indices: 1058689--1058727 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
1058679 TGTTTCCTCT
1058689 GTTCCACTCC
1 GTTCCACTCC
*
1058699 GTTCTACTCC
1 GTTCCACTCC
*
1058709 GTTCTACTCC
1 GTTCCACTCC
1058719 GTTCCACTC
1 GTTCCACTC
1058728 TGTTGCACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.10, C:0.44, G:0.10, T:0.36
Consensus pattern (10 bp):
GTTCCACTCC
Left flanking sequence: Indices 1058189 -- 1058688
AGTTCTGTAGCTCTTATCTGAGGAGTTAGTTCCTCTGAAGCAGCAGTGTTTCCGGAGTTGGTTGT
TCGGAGGAGTTGTTTGTTCCTTAGGCGCTGGGTTCTCTGAGCTAGCAGTGTTTCCCTCCGGGCGT
GTAAGTTCCTTGAGTCGAGTCATTCCCTCTCTTCGATCGGTAAAGTCTCTTCCTCAGGGGTTGCT
GTTATGTCTGTAGCTCCGCTCAGCTCCATCGTTCGAGTTATTCCCTCTCTGTGGTCGGGAATTCC
TCTCTCTTCGTCTCTTCTGTCAGTCGAGTCTGTCTCTCTCTTTGTTCGTTCTAGCCTCTCCTTCT
TCTCGGTGTTTCGAGTCTCTTCCTCTCTGCGTTCGTTCGTTTCTCTCCCTTCGGTCGTTTCTCTC
GCTCTCTTCGTTCGTTCCTCTCTCTCAGTGCAGTAAGTCAGCTCAGTTGGTTGGCTCGAGTATAT
CCCTCTCAGTGTTCGGTCTATTCTCTCCCTCGGTATGTTTCCTCT
Right flanking sequence: Indices 1058728 -- 1059227
TGTTGCACTTGATTTCTGGTGTTTGTTCTTGGTTTTTCTGGGCGCTTCACCTGTTTTAAGAGTAA
AGGAGTAATCCTTGAGTTTGAAGTTGTAGGAGGTGGAGTAAAAACCAGGCTGCTTTCACGGCGAG
GAGCTCCCAAAATAGACTAAGAAAAAGCGTATTTCTCTGTTAATTGGCGTTATTTATTCCTTTCT
TTAAAACAACGAGGCTTTGATGTCAAGATTATTCATTGGATTTCTCATCTGGGCGCTATTGTATT
AATTTGAATGGTAATTTCACTGCATATCATGAATGTCGCCGTGGACTCAAACAAGGTGACCCCTT
CCTTACCTCTTTCTCATTGCGGCCGATGGCCTAAGTAAATTGCTAGATCGTGGAATTGAAAAAGA
GCACTTCTCTGGTTTGGGTACTTCTTGAAACTAGGGTCAAAAACTACTTCATCCCCAGTACGCGG
ACGATACCCTCCTTTTTACGTTGGTGATGAAGGAGCAAAGGCCGC
Found at i:1070433 original size:16 final size:16
Alignment explanation
Indices: 1070412--1070443 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1070402 AATCCATTTT
1070412 CATCTATATGTCTTGG
1 CATCTATATGTCTTGG
1070428 CATCTATATGTCTTGG
1 CATCTATATGTCTTGG
1070444 TGAAACTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (16 bp):
CATCTATATGTCTTGG
Left flanking sequence: Indices 1069912 -- 1070411
CATATGGGTATAAAATAGAAAGACTTTCTGTGATGAAAACTCTCAGAAATTGAAATTCTTGGTGG
GAAAACTCACTTTTATGAGCAAAGTGAAAAGGAAAAAGCATTATGCTTGTTATAAAAGTTGTGCT
TGATGCTGAATGTATGAAAAGTGAATTGCCAAATTTCAAGCAATTTGAAAAGAAGGATTTAACGT
GTTGTTAATGCAGTGATTAAAGAAATGTTTCTCTCCATAAACAAGCTTTGAAGTTGATCTTCTCC
TGTCCCTTTCCATATGTTTTTCTGAAATAGTATGGCTTGATTTGTTGAAAAGGCTTGATAGACTC
AGTGCAAAGGGCAGCAAGCTGAAGCTTGCCTGTAGAGTTCTTCGCTCGGTATGCTTTCTTATCTT
TTGCGAGTCTTTCTATATGCAAAAAGGGCATTCCATGGATACGCCCGGGTTCGTTCAGAAGAGGT
GGACAGACAAGCACTTGACTCATTGCCGTGAAATGAATCCATTTT
Right flanking sequence: Indices 1070444 -- 1070943
TGAAACTCGGGGAATGTTTTTCATTCATGTTGTTAGTCTCAACTGGATGGAGTATACCCGCTTCG
TAGTGTTCACGTGATCGAAATGCATTGGATGTATGCCCGGCCATGTCCAATATTTAATAGATATA
CTTTTGATGTCATGCCTAGACACTACTGACAGTGAGATAATCAAAGCAAAGAGCTTTCTTTCTCT
AGTGCTAATGTGGAAATGGAAATCCTTCCTCAACGCTCCGCGCCTTGCTTATGGAGACTGCAGTT
ACTACGAGTACTCGAGCATCGGGTATTCTAAAGGAAAGGCGGCAAAGCACGTACTAAGCCTCACC
ACCAACCAAGGGCGCATATAAGCTGTTAATACTGAATCTAGGATGTCTAAGACAGATAGAGTGAC
AGGGGGTTGAGAGGCAGGGCTTAGAGATGGATGCAGAAAGCTCCCCTTGTCCGGCCAGGAAGCTT
CTTTCCAAGCAGTTGGCATGTCATAGGCAGGTTTGCAAGGCGATC
Found at i:1093437 original size:22 final size:22
Alignment explanation
Indices: 1093394--1093438 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
1093384 CTGGACCCAT
*
1093394 TGAAACTTTGGATGGTCGAGAC
1 TGAAACTTTGGATGGCCGAGAC
*
1093416 TGAAAC-TTGTGATGGCCTAGAC
1 TGAAACTTTG-GATGGCCGAGAC
1093438 T
1 T
1093439 TTGACTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (22 bp):
TGAAACTTTGGATGGCCGAGAC
Left flanking sequence: Indices 1092894 -- 1093393
GCCAACAACATAGATTTGCCACGGACAAGCATCTTGCCACCTTATTTGGAATGCCCCTTTTTTGA
TTCAATTGTGTACTCGTTCCTGGTCAATTTTTTGTGCCATTTGAGAATGCCTTGAGAAGACTGTG
TGAAAGAGAGCACGAAGCCGACCATGAATCCAAGTAAAAAAAACCCAATTTGCGTGATCATCTCC
CGATTTCAAAGCACTTTTTTTATGCACCCCACTCTTCTCTTTTTTTCCTATCCGCTGGTCTTGCC
TTTCTGAGAAATGACACTCTCTTTTATAAGAGCGCTCTTTTTTAGTACCTATTAGTAGAAGATGA
GCTGTAGTCATTCTAGCTAGAAAGTCGCATATACGCTTTCAATGTCTACTTCAAAGCCAAGATGC
TTGCTACCATATTTCAAGAAAAGGAATACGCGAACTACTTCACAGAAATACGTAAATTGCGCTGC
TTTTGCCTACTTAACAATCAATATTTTCTTTTTTACTGGACCCAT
Right flanking sequence: Indices 1093439 -- 1093938
TTGACTTTTGACCCACTGCCTTTACACTTTTCAGGGCCCCCCTTCGACAGCACGAGTAGATAGCA
TAGGCAAGGTCTCAGAGCCCCGCCTCATTGATAAGGAAGGAGTAAAGCTAGTTGGTAAAGTTCAG
AGAGCTTTCTTTCGTCTTTACCGAAGAAGCTTATACCGGATTTTGCCAATTTTTTAGGGTGTTTG
TTCTGGTCTTGCTTAGATTTATCTTGAGTAGTCTTTTTGCGCTCTTGCTTACTTTGTTCTTGAGT
AGGCTGTATTTGATCTTGTTTTCTCGAAAAGTCAGAATTGCTTCACCCGTGGCTTGAACACTGAG
AAAAATGGCGGCGGGCCGTGGTGGTCGACCTGTAGAAAAAGCTTTAGGCTGATAAGCAGCGAGGA
TTACCAAAGGTTGTTGGTAGAACGCTTTTGGGCATGAGTCAAGCCGGTAGAATGGGTCTGGACTC
ATTTACACATACATATTCCTAGCTTTTCCTTAGCTTCGTAAGTAA
Found at i:1100576 original size:13 final size:13
Alignment explanation
Indices: 1100558--1100584 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1100548 TCCTGATTCC
1100558 CGATAGATTTAGG
1 CGATAGATTTAGG
1100571 CGATAGATTTAGG
1 CGATAGATTTAGG
1100584 C
1 C
1100585 AGCTCTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (13 bp):
CGATAGATTTAGG
Left flanking sequence: Indices 1100058 -- 1100557
ATCCATACTTTTATTCACCATTGAGAGATGTTTCTATTTTTTAGACTCTTCCCTTCGGGAATTTC
AATAAAATAGAGTGCAGCTCTAGCAGCATTCACACTCTTTTCACAGGTTGGTTCTACCAACCGAA
ATGAAGAACTTTGGGAAAGGCAACGAAATGAAGATGATGCCTAACAAAGGAAAAACGGGCAGTCG
AGAGGAAGCACTCTTCTCGTGACCTCAGATCAATATAATTAAGAAAATCTGAAATGAAAAAAAGA
GATGTTGAGGAGGTAGCTGTATTTATTCGGCGCCTTCCTAACTAGGGCTGGAATAAGCTCTTCTA
TTGCCCAGCGCATTGGATGCACCATCGAATAACATAGACCATCTCTCTTCTTCGCCCTGGCGCAC
CTTCCAGTACGGCTACCTTGTTACGACTTCACTTTAGTCACTCCCTCCCTTGCAACTTGGAAAAG
TTATGACATGCCCGCGGTCTAGTATAATGAAGTGTTCCTGATTCC
Right flanking sequence: Indices 1100585 -- 1101084
AGCTCTTTGATTCGTGAAATACCTTAGGATGGAGTCTTCTACTGGGAATTTTGCAGTTCAGCCCC
AGGTAGGCGCATAAGTTCATATATATTCCCGGGAGCGAATACACTGGATCTAGGTATGTAGGCGG
CGGAGTTGAGAGTGGTGGTTCTGGATTTTGACCTAAAACCGCGCCTCTTTATGATTACAAGTAGT
TCCCTGACTTTCGATCTGGTAGTGATGCTGCGGGCTTACTGAAATTCCTAGCCTGTGGTTCCCAT
ACATCCATGTCAAAACCTATCTCGCCATTTCCTTATATTCGTCGAAAAAAAGATCCTTCCGACGG
ATGTCATACCTGGCGGGCCCTTCTTCTATCTTTCGCCCTACCACTGAGCTACTGAGGAACAACGG
ACTTCAACCTATTCGAAATCTGTGTACCGCAGACGTCAAAGCAAAAAGGTGCGTTACTTTTGATG
TGTGCCATACATCAAGTGAACAAGTCCCGGCTGCCTGCGCGAAAG
Found at i:1123821 original size:21 final size:21
Alignment explanation
Indices: 1123781--1123821 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1123771 CATGATCTTC
*
1123781 CTCTTCTTCCTCATCCTTCTG
1 CTCTTCTTCCTCATCATTCTG
*
1123802 CTCTTCTTCCTCCTCATTCT
1 CTCTTCTTCCTCATCATTCT
1123822 CCTGTTCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.44, G:0.02, T:0.49
Consensus pattern (21 bp):
CTCTTCTTCCTCATCATTCTG
Left flanking sequence: Indices 1123281 -- 1123780
CTACACCCAACTGCTTTCTTGCCTGGTGGTAGTGACACAAGCTCCCAGGTTTTATTCTTATCTAG
AGCCCCGAGTTCTTCTTGCATAGCTGCTTTCCACTTTGGATCCTTCTTAGCAACCTGCCAGCACT
TAGGTAAAGTAACAGAGTCTAATGATGCAATGAATGCTCCATGAACATGTGATATGTTAGAGTAT
GAGACAAATTGAGCAATATCATGTGGGAAACCATAACGATCAGGAGGATGGCCTGCATTACTGCG
AGAAGTCCTCCTTAATGTTATTGGAGTGTAAGAAGAAGAGAGAGGATTCATATCACCTGTTTCAG
ATTCAGAGTCTGAGGAATGATCTGTGGGTGTAGGTGTCTCAAGAGTTGGAGTAGACCGAGACAAG
GGACTTGGCACAAGTGGTATGGTTGGTGCATTCATAGGACCTTCTTTCGGCCTCCTAGTATACAC
TCGCAATTCACCTCGAGTTTGAGTCCTAACATTTTCATGATCTTC
Right flanking sequence: Indices 1123822 -- 1124321
CCTGTTCCTCCACCGATGTAGGAATCAACAAAGGAGTTGGTCCCACTTTCTCAATCCTAACACCA
TTCTCCCCCTCTTGTCTTATACTTGCAGACTCAGACAAGTCACCAAAAGGTGAAGTCACCTCCAT
TGTGTAATACGGTTCGAATTCTCGAAAATGTACATCCATACTCACAAACAATCTCTTTTCCACTG
GGCTCCAACAAACATAACCCTTTTGTGTAGCAGAATATCCCACAAATATACATTTCACCGCTCTA
GGATCGAGTTTCCCTACAGAAGGTCTGTTGTCCTTCACAAAACATACGCAACCAAACACCTTCAA
TGGAAGGAGCCCGGCATTATCTCCTTTCAACATCTCACATGGGGACTTCCATTCCAACACCCTCG
AGGGCATCCTGTTAATCAATGCTGCAGCTGTCAAAACTGCCTGCCCCCACAAATGTTTTGGGACA
TTCATGGAGATCATCATACTTCTAGCCACCTCTAGAAGATGTCTG
Found at i:1188136 original size:17 final size:17
Alignment explanation
Indices: 1188114--1188147 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1188104 AGATGGACTG
1188114 TCCGAGCACGACAACTA
1 TCCGAGCACGACAACTA
1188131 TCCGAGCACGACAACTA
1 TCCGAGCACGACAACTA
1188148 GCTAGTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.35, G:0.18, T:0.12
Consensus pattern (17 bp):
TCCGAGCACGACAACTA
Left flanking sequence: Indices 1187614 -- 1188113
CGCGTGACACAACACCGTTCCTGCTTCACGCTATGGGAATTGATTTTCAAAAGAGAGTTCTACGG
TTAGGACAGTTGGGAAAGGAGTGAGTGCTTCTTCAGACTGGGTAGACCTGGAGAAAACTTTTCAT
TTGGAAGCAAAAATCGATTCATCAAATCTTGCTTTGTTATGCTGCCATATATAATATCATTCCTT
GAAATTGTTGTGAGTGACTTTGCCAGACTTACTTATGATGTATACAGCTTGTTTTATAGCTCGAT
CACTGTCTTATGCACTCGCTACGCGCCTATGCACTGACACGAGGATAGATTCTAGATAGCCGCTT
CGGTATTAGCTCTATGACCAGAGAGAACTACTATGGCAGAGGCTGTTGACGTTGTAGCATTTCAA
GGGGAGAAAATCAATCCTACTAAAAGAAATCCAACTACACTTAATATTCGTTTAGGAAAAAGCGG
GAAGTGTCATTACTTGGTTCGCGCCTGGAAGAGAAAGATGGACTG
Right flanking sequence: Indices 1188148 -- 1188647
GCTAGTAGTACTGGACTTTGGAGAAAGGCGGATTTTCCGTTCATAGTTTGGAAGAGTCGTAAGCG
AGAGCATCATATTATTATTATTTTGATGAAGAGATTCTATAGTATAGGGAATATTTTTCCTTCCT
ACCTTTTTTTTCTTCGTGCAAGGTACTGCAAATTATGAGACGCATTGTTTTCCTCTTTATTCTCA
GCTCTATAATAGCTAGGTACTTACTTAGGAGAAAGCTCCGTGGGAGTAAAGCTAGCCCATGTCGA
AGAAAGAAGACGAAAGAGTACTTTTTGCTATTTGACTTTATTTCTAGTCGATGGCCATGTATGTA
TAGCATTTGAAGTGAGTACTAGGGCTAAAAACCCGACTGTCTTACGATTACGGGGTGAAAACTTG
ATGGATTACCTCCGAGGTAGGAATTCTCTTGATAAGGATCTCTACCACCAGATAATCTTTCTATT
TACCTGGGCTAAAGCTACTTACCAAAAATCAAGCTAACTACGACT
Found at i:1190691 original size:21 final size:20
Alignment explanation
Indices: 1190663--1190705 Score: 77
Period size: 21 Copynumber: 2.1 Consensus size: 20
1190653 CCGGTAACCC
1190663 TTTTTCCATGTAGTATTTCG
1 TTTTTCCATGTAGTATTTCG
1190683 TTTTGTCCATGTAGTATTTCG
1 TTTT-TCCATGTAGTATTTCG
1190704 TT
1 TT
1190706 CGGTGGGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.56
Consensus pattern (20 bp):
TTTTTCCATGTAGTATTTCG
Left flanking sequence: Indices 1190163 -- 1190662
CCAATTGGGAATGCAATGTCTGGACGGGGGAAGTTAGTGTGGCTATATGCTTTTGCGAATTTAGT
GCTAAGATTAAGGACGATAATATAGTAAATGCATCTCTTTTCGAAATGGAAGCACTCCACTCAGT
CGTATATAAGCTCGTCAACTTGCTCTTTAATAGACATAGTTGCTTACTCTTTGGAAATATAAGTA
TGGTCTCTGCCTTGAAAGAAACTGAAGTTCTTTGCGAAGTGGTTAATTAAGTAGCCCCATCGGTG
AAGTGTGTATCTGGATTTCTCTATGCCCGTACGTGCTTGCCAAGCCACCAGTTAGTTACAGCCTG
CTGAGTAGCAGTGAGTTAGCGTGTGGTATTTCTTTGATGAAAAAGCTCCTCCCTCTAATTAATTC
ATCTTTGATTCTGTTTTGCGCGCTCTCTCCAACAAAAAAGAAAGTGAAATAAGAATGGAAGGCCC
CCAGAGATTCACAGTATAGCTTGGCGGGGTTTTTTCCGGTAACCC
Right flanking sequence: Indices 1190706 -- 1191205
CGGTGGGACCAACCACTTTTCACCTGTCACTATTTTAATATAGCAAACATACGTGCTTAACACAC
TTGGTGCCTTTGCATTTAGCCCGCTTCGCGAAATAGAAATATATATATGGAATAAACCTATCTGC
TACAAACTTGCTCCTTTTGTTTTTGAATTCCTTCGTTGTCAAGGGAAGGCGCGCATTTCTACCGC
ACTCCTCCTTCTATTGTTGGCGTCATAATCCACTATTTCCCCCCTTTTCCGCTCAGGTGGAATTG
CATCCCAAACCTGTTCTTGGAAAACCAATTTCTTGGAAAACCCATTCTGGATACTTCACATAAAA
CTGTAAGCTTCATAAGCCCAGTTGAAGAGCAAAAACATCAATCATAAAACCATGGGCATTCCCCC
AACGTAGTGCTTCTTCATCCTACCTCTAAACCTACCAGGTTGTTATCCCTATCGGTGAAAAGTCA
ACCCAACGTGATGTGGATGGGCTAGTAGACATAGCTTTCCTTCTT
Found at i:1200602 original size:28 final size:28
Alignment explanation
Indices: 1200570--1200625 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
1200560 ATCATTTCAA
1200570 GCAGCAAGATACTTCCCTTCCTTACTTT
1 GCAGCAAGATACTTCCCTTCCTTACTTT
1200598 GCAGCAAGATACTTCCCTTCCTTACTTT
1 GCAGCAAGATACTTCCCTTCCTTACTTT
1200626 ACTAAGATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.32, G:0.11, T:0.36
Consensus pattern (28 bp):
GCAGCAAGATACTTCCCTTCCTTACTTT
Left flanking sequence: Indices 1200070 -- 1200569
TGAAGGAAGAAAAGCAAGCATACCAAATAGCAATGCTTCTCCATGTTTGTCTCTTTACCTAATAC
GAAATTACACACACGTACCTGGTATGTTTGTGTCAAAGCTTCCCCTCCTTTGTTGTGTTCTCAGC
TGTCAGTCTACCTTATGTCTACTTTACCTCTGAATGATGAGTGGTGGGTAAGCGAGTAGAATCTT
CAATTCCTGGTGATTGTGAGTTTAGTTTTCTTGGTTCGGGCTTACAAACACAAGTTCCACTCCAG
CCTTCTTCCTTGGTGGAAATATAGTTCCATTAGAGGCTCGCTCCTTACGGTGGAGCATAGCATGG
CTTCGTTCCTTTATTCACCTTTCAATTAAAAGGTCTCCTCCCTCTCTCTAAAAGAGTTCCCACAC
ATAGATAGGTATAGAAATTGAATACTAGTCAGGAGAATACTAGTAAGGTAAGGGACATAAGTTCC
AGCAAGAGTGGATAGATACCAGGGCCCATACTACTATCATTTCAA
Right flanking sequence: Indices 1200626 -- 1201125
ACTAAGATAGAATAAACTAGATCCTCTCCCTTTACTAGCTAGAAGGAGTTCCCTAAAGGAAGGGC
TAACCAATCAATAGAGTACCTATATCTTTATGTGCACTCCCTTTCTTTACCTCTTTTTGAGAGAG
CTGTATCCACTAGTTAGTTGTAGGATAGAAGGAGTTAATTAAAGGAACTCCTGATGACTATAAGA
GGTATTGGAATAATATCCAACGAGTTAAGTCCCAGGAAAGAATCAGATGTAACGGAAATGTTGAA
GAATATGTTTGCATAGCATGATATTTGATTTTGAACCCGGGCTTCATGCTTTTTAGGAGAGGAGG
GAAGAAACCCAGCAGCCAGCCAATAAGACTAAGCAAGAAGAGTAACCCAGGTAAGTGACGATGAA
GTTTCTTACTCTCTTTGCTAGCACAAGATGAAGATTCAGTAGCGGCAGATAAAGACTTAGGAGAA
GCATCAACTTAGGAAGCAATCTACTTTTGATGGAAATAAAAGGAA
Found at i:1214330 original size:25 final size:25
Alignment explanation
Indices: 1214302--1214353 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1214292 TGCTCCAGTC
1214302 CAGTTTGGAGAACCTACAAATATAT
1 CAGTTTGGAGAACCTACAAATATAT
1214327 CAGTTTGGAGAACCTACAAATATAT
1 CAGTTTGGAGAACCTACAAATATAT
1214352 CA
1 CA
1214354 AAAATAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.27
Consensus pattern (25 bp):
CAGTTTGGAGAACCTACAAATATAT
Left flanking sequence: Indices 1213802 -- 1214301
CAAAAGCTCAATCTACAGTCAAAGCACAAAGTCATGAAAAGCTTTTTTTGCTGATTACTAATTTC
CAATTTCAAGTTAACTTAAAAGCGAAAGAACTAGGAAAAGAAAGGAAGTGCGTATTTTTGTTTAA
GGAAGCAAGTGCTGCCAAAGCTGTGTAGGGCATCGTGCTCATTCCTCAGTCTTTCAAGCGCAAAG
GAAAGAAAGTGCTTTTCACTTATGCTTATTCTAATGAACAAATGAGACACAAACAGACTAGTCAC
TATTTACGAAATAAATGAAAGAACAAAATTGGGGTGATCGGAGTATCAAAATTGGGATGCTCACT
CAGTAGTGGACTCACCATAGCGCGCTAAAGCAGAATGAACAGGACATGTGGATTGGTTCACCTTT
CAAAATATCTTCTGAGTAGGTGATGAACCGAATGGTTGTGCGGACACTCATCATGTTGCAGCCTC
TCAGAAGCCAGGCCTCACAAATCCTCAGCCAGACCTGCTCCAGTC
Right flanking sequence: Indices 1214354 -- 1214853
AAAATAGAGATATTTCTTATAAGCCATCTGAATACAAGCCCAGAAAAACAGAATAATACCGCTTT
GTAATTATCGAAGCTGATCGCATAGGTAGGTAGGATCAATCTTCCAAGAAGATAGCACTCAATAG
TCAATCCATTCCTATTACTGCCTGGTTCTCGGATGTAGAATAAGTTGGACGAAAGTATACAGACT
TTGGTACATTTAATTTGGATTACTATATCTTTGGGGAGCGACATCGAGGTGCCAAACGGTTGTCA
CTACATCTTGGAGATGATCCAATCTCTAGTTGGCTAGGTTTGTTTTTTTCCTCTCTCCCTATCTC
ATAGGCGCTTGGTTGGCCTTGAACCGGAAAGGCTTTGATGTCAAACTAGGCTTTTCGTTCGTAAC
ATTAGTAGTTACTCACTGGGACCATACATTTTTAGTCAAAAAAGGAAACCCTCTGGGTCTTGCTC
TAGTCATCCTAAGTGAGGTATTCTTCTTTGTATCAGTATTCTGGG
Found at i:1249518 original size:30 final size:28
Alignment explanation
Indices: 1249483--1249542 Score: 104
Period size: 27 Copynumber: 2.1 Consensus size: 28
1249473 CGGCCTTTTC
1249483 TTTTCTCTTAATAATATCATATAGCCGTG
1 TTTTCTC-TAATAATATCATATAGCCGTG
1249512 TTTT-TCTAATAATATCATATAGCCGTG
1 TTTTCTCTAATAATATCATATAGCCGTG
1249539 TTTT
1 TTTT
1249543 TCTTCCTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 25 0.81
28 2 0.06
29 4 0.13
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (28 bp):
TTTTCTCTAATAATATCATATAGCCGTG
Left flanking sequence: Indices 1248983 -- 1249482
GTGAGAACGTTCCCGCTGTTATAGGCGCGGACTCTTGAAGAAGTGGAGACCTTCTCGCTTGACGC
GGGAGATTCCACAAAAACCACGTTGATAGGGGCCACCTCCTGAACAACAAGAAAAATTGCATTCC
GTTTTTGCGGTGTGCCCGGTATTGACCCGGCTGTGATGGGTGACACATCGATTAGCGATTGATGA
GAAGTTCAAATTATGTTTCTTTCTTTTAACTCACTCCTATTGGAGAATTAGGTTTTGGTTCCCTT
CTTAGGTGGGTAAGGCGAGCAAAGCAACCAACACGAGTTTCATTCTCATCTTCTAAGTGAGAAAA
GAAAGGGATTTGCTGCGGCGCTTCTGCTTGAATTAATATTCCTGAATATCTTCCCACACTCTATC
TTTGAAGTGGCTATCGTACCGGGCACTCAACAGCTTCCTAAAGTGCACTCGCTCATCAGTCGTAA
CATTCACGCACTCCTCCATTCACCGCTCTTCCTGGCGGCCTTTTC
Right flanking sequence: Indices 1249543 -- 1250042
TCTTCCTAAAACAATCTAACTAAAGATCCCTAAGGGTAAAAAGATACTAGTAGGAGATACTAGTT
GGAGATACTAGTTGGAAAGACCGGGGAAGAAAGGACGAAGGAGGCGCGTAGCGACAGAGAAAGCC
CAGGAGTTCATTGCGCGATTCAGACTCTTGGCGATGCAATGTTCGGAGCCTATTCCCATAAAATA
CAAGTCTCTCTTGGACTAAAAGCAAGAAAAAACAGAAAGTATTGGGCTTTTTACTAGGAGTAAAG
TAGATGAGTGAGTAATCGTCTGGTTTGCACTTGAAGTGCTGGTTTTGATTTTTATAGTTCTCTGT
CACAAGACTGTTCTTTTCTTTTTTTATTCAAAAAGATCAAGTGCTTGGTCCTTGCAAGGAATACC
GGATTTTCTGCTAGACATACAGCTGACCTTTTATCACAATGCAGTGTTACTCGGCCGACTGGTTG
GTGAAGATCCTGAAAGAGTCGCATTAACCTTGCGCTCTCTTGTGC
Found at i:1249523 original size:27 final size:27
Alignment explanation
Indices: 1249491--1249545 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
1249481 TCTTTTCTCT
1249491 TAATAATATCATATAGCCGTGTTTTTC
1 TAATAATATCATATAGCCGTGTTTTTC
1249518 TAATAATATCATATAGCCGTGTTTTTC
1 TAATAATATCATATAGCCGTGTTTTTC
1249545 T
1 T
1249546 TCCTAAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (27 bp):
TAATAATATCATATAGCCGTGTTTTTC
Left flanking sequence: Indices 1248991 -- 1249490
GTTCCCGCTGTTATAGGCGCGGACTCTTGAAGAAGTGGAGACCTTCTCGCTTGACGCGGGAGATT
CCACAAAAACCACGTTGATAGGGGCCACCTCCTGAACAACAAGAAAAATTGCATTCCGTTTTTGC
GGTGTGCCCGGTATTGACCCGGCTGTGATGGGTGACACATCGATTAGCGATTGATGAGAAGTTCA
AATTATGTTTCTTTCTTTTAACTCACTCCTATTGGAGAATTAGGTTTTGGTTCCCTTCTTAGGTG
GGTAAGGCGAGCAAAGCAACCAACACGAGTTTCATTCTCATCTTCTAAGTGAGAAAAGAAAGGGA
TTTGCTGCGGCGCTTCTGCTTGAATTAATATTCCTGAATATCTTCCCACACTCTATCTTTGAAGT
GGCTATCGTACCGGGCACTCAACAGCTTCCTAAAGTGCACTCGCTCATCAGTCGTAACATTCACG
CACTCCTCCATTCACCGCTCTTCCTGGCGGCCTTTTCTTTTCTCT
Right flanking sequence: Indices 1249546 -- 1250045
TCCTAAAACAATCTAACTAAAGATCCCTAAGGGTAAAAAGATACTAGTAGGAGATACTAGTTGGA
GATACTAGTTGGAAAGACCGGGGAAGAAAGGACGAAGGAGGCGCGTAGCGACAGAGAAAGCCCAG
GAGTTCATTGCGCGATTCAGACTCTTGGCGATGCAATGTTCGGAGCCTATTCCCATAAAATACAA
GTCTCTCTTGGACTAAAAGCAAGAAAAAACAGAAAGTATTGGGCTTTTTACTAGGAGTAAAGTAG
ATGAGTGAGTAATCGTCTGGTTTGCACTTGAAGTGCTGGTTTTGATTTTTATAGTTCTCTGTCAC
AAGACTGTTCTTTTCTTTTTTTATTCAAAAAGATCAAGTGCTTGGTCCTTGCAAGGAATACCGGA
TTTTCTGCTAGACATACAGCTGACCTTTTATCACAATGCAGTGTTACTCGGCCGACTGGTTGGTG
AAGATCCTGAAAGAGTCGCATTAACCTTGCGCTCTCTTGTGCTGC
Found at i:1249620 original size:13 final size:13
Alignment explanation
Indices: 1249584--1249623 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
1249574 AAGGGTAAAA
*
1249584 AGATACTAGTAGG
1 AGATACTAGTTGG
1249597 AGATACTAGTTGG
1 AGATACTAGTTGG
1249610 AGATACTAGTTGG
1 AGATACTAGTTGG
1249623 A
1 A
1249624 AAGACCGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (13 bp):
AGATACTAGTTGG
Left flanking sequence: Indices 1249084 -- 1249583
CTCCTGAACAACAAGAAAAATTGCATTCCGTTTTTGCGGTGTGCCCGGTATTGACCCGGCTGTGA
TGGGTGACACATCGATTAGCGATTGATGAGAAGTTCAAATTATGTTTCTTTCTTTTAACTCACTC
CTATTGGAGAATTAGGTTTTGGTTCCCTTCTTAGGTGGGTAAGGCGAGCAAAGCAACCAACACGA
GTTTCATTCTCATCTTCTAAGTGAGAAAAGAAAGGGATTTGCTGCGGCGCTTCTGCTTGAATTAA
TATTCCTGAATATCTTCCCACACTCTATCTTTGAAGTGGCTATCGTACCGGGCACTCAACAGCTT
CCTAAAGTGCACTCGCTCATCAGTCGTAACATTCACGCACTCCTCCATTCACCGCTCTTCCTGGC
GGCCTTTTCTTTTCTCTTAATAATATCATATAGCCGTGTTTTTCTAATAATATCATATAGCCGTG
TTTTTCTTCCTAAAACAATCTAACTAAAGATCCCTAAGGGTAAAA
Right flanking sequence: Indices 1249624 -- 1250123
AAGACCGGGGAAGAAAGGACGAAGGAGGCGCGTAGCGACAGAGAAAGCCCAGGAGTTCATTGCGC
GATTCAGACTCTTGGCGATGCAATGTTCGGAGCCTATTCCCATAAAATACAAGTCTCTCTTGGAC
TAAAAGCAAGAAAAAACAGAAAGTATTGGGCTTTTTACTAGGAGTAAAGTAGATGAGTGAGTAAT
CGTCTGGTTTGCACTTGAAGTGCTGGTTTTGATTTTTATAGTTCTCTGTCACAAGACTGTTCTTT
TCTTTTTTTATTCAAAAAGATCAAGTGCTTGGTCCTTGCAAGGAATACCGGATTTTCTGCTAGAC
ATACAGCTGACCTTTTATCACAATGCAGTGTTACTCGGCCGACTGGTTGGTGAAGATCCTGAAAG
AGTCGCATTAACCTTGCGCTCTCTTGTGCTGCCATAGCTGCCGCTCTATACTCCGCTTCTGTAGT
CGAGAGAGACACAGTTGGTTGCCTCTTGCTACACCAAGACATGGC
Found at i:1274148 original size:22 final size:23
Alignment explanation
Indices: 1274111--1274153 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
1274101 TAGGGCATGC
*
1274111 AGGATTCTCTCGAAGATTTCTCA
1 AGGATTCTCTCCAAGATTTCTCA
1274134 AGGATT-TCTCCAAGATTTCT
1 AGGATTCTCTCCAAGATTTCT
1274154 TCGCCCCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (23 bp):
AGGATTCTCTCCAAGATTTCTCA
Left flanking sequence: Indices 1273611 -- 1274110
GAGTAGTCGTGTATGTTGTTAGTTAATATTATCGAAAGATTAGTTAAAACGAGTCGATCCTCAAA
GGCGCGAACGAACGTGGCTAAAGAAGGGAGCTATCGGCTCAAAGAAAGAGTAATGAGATTGATTC
CTTGGTTGATTCTTGAGCATTTGTGCCTTAGATTTAGCGAGCTCTTCTGATCTGTATCGTTTCTA
TACCGAGTTCATGTTGCAAAAACCAGAAATACCAACTCCAACTGATAAAAAGAAGGCACTAATAA
GAGAAAGCAAGCAGCTAGACAAAGCACTAACTCAGAATAATGGACAAATTCAAAAGACAGAGCAG
GAAACTATGCTTACTAACCTAGCAAGCTACTATAGAATATAGGTTGAAACTCTCCCATTCCCGGA
CGCATCGTCAGTGCAAGGGGCATCTAGGGTTACAGAGCCAAGGTTTAAGTGATTGAAAAGCTCCC
ACCACCAACCAATGTGAAGGATGTTAGAAGTTTCTTAGGGCATGC
Right flanking sequence: Indices 1274154 -- 1274653
TCGCCCCTATGCAGATTGTTGCAGAGGGGGGGGATTTCTAAAGTGTTTTGAGAGAGTGAGAATGC
AAATCTAGATATAAATGCCATGCCGCCTTACCTGATCAACTTTCACGTTGAAAGAAAAGCCCTCC
TCTGACTAAACTCGACTGTGGGAAATACTCTGTCAAGGGCATGTGTGTTAAGCATATAGCTATCT
TACTTTTATCGTATATAGTGACTCATATCTAGTTGTCTGTAGGTGTTCCTCTTTGCGACACGAAA
GAAGAATGGGAGGCCCAAAGTGCTCTACAGTAGCGCCCCGAAATGGGGTCGTAGTGGCCGGTAAC
CTTCTCCGTCTAGTATCTCGGTAAAACATAGGGCGTAGCACTGAAAGGCTAAAAAGAGAAAGTCA
TCTAGTATAGTAGAACAAGATAGCTATGTCTATGCTGAACACAGGTTCAAAAAGTAAGTGCGAAA
ATGCCACATAAGAGTGGACTTATTATGTGAGATCTCCCACCGGAC
Found at i:1280933 original size:26 final size:26
Alignment explanation
Indices: 1280897--1280950 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
1280887 TGTTGCCACG
1280897 ATTCGAGAGTAGCTATTGAGATTTGA
1 ATTCGAGAGTAGCTATTGAGATTTGA
1280923 ATTCGAGAGTAGCTATTGAGATTTGA
1 ATTCGAGAGTAGCTATTGAGATTTGA
1280949 AT
1 AT
1280951 CAATAGCGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
ATTCGAGAGTAGCTATTGAGATTTGA
Left flanking sequence: Indices 1280397 -- 1280896
GAAGTTGTTGCTTACCCCATTTCTTACACCTCCTCTCTTTAGTACCTAGTCCCCACGTACAAAAC
AGCAGAGGGCATATAAGGACTGAGTGAATTTACTGATTAGTGTATAACTAGTTCAGTGCATTAGG
ATTTCCGTTAGATTTGGTTAACCCATCGTGAAGAGTATGCTTCTCGACCTCTGCCTGTAATATAG
GTTTTGCCCTGTGATTGCATTCCCCCTTCAACTAATATTCTATTGTATCTCAGTCTCTAACTCGC
TAATCGGTCTATTTCCTTCCACCTGAGGCGCTCTAAGGTGTAAATAACCTTTTGTTCATTCAAAA
CTGCGTCCTTCCTATAGTAAGAACTTAATTGATCAGGTCTAGAAATGAACATCACCTTATTTGAG
TACTGATTTCATGATTAGTAGGGCAATCTTCTATCCTTATTTGTACTACAGGGCAGGCGCGCAGC
GAAGCAACGCGCAAGAACAGAGAAAGCGAACCCCTTGTTGCCACG
Right flanking sequence: Indices 1280951 -- 1281450
CAATAGCGACAAATAGAAAGCAATCAGAACGACGAGAAATAGCACTAGTAAAGTTAAGCAAGTAG
TTGAAAGCTAAGGCCGCTAAGGCGCGAAGCGTTTCACACCTCACTTCTAGAACGAAGAGAATGCC
TAGCCGAGTGACAAGAGTTTCAAGCCTAGGAAGGAACCAACACTCTTCCAGTGAATAACTACGGC
ATGTTACGAAGAACAAAGAAGCTTTCTCTGTTGAACTAGACATGGAACGAGTTCAGTAGGCATGT
TACGAAGAACAAAATGGGGGTGGGGCATGAAATCACTTCGGAGCTTCGATCAGTCTGGGAATGCG
CTACACTAGTAAATGAACACTTAGTCAGTCAAATCGGTCTGGTAAAGCAGCCAGCATTCTAGAAC
TTTCCAGGTAACTCACTTCAATAGGTAATTCTTTCTGAAATACGAGACGAGTAGGAAATAAACAA
CGAGGCGCGGAGCAATCACTTCGGAGCTTCAATCAGTCAGGTAAT
Done.