Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_068017
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 878988
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Found at i:12501 original size:13 final size:13
Alignment explanation
Indices: 12483--12524 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
12473 ACTAGTCTGA
12483 TAATCAACGCTAG
1 TAATCAACGCTAG
12496 TAATCAACGCTAG
1 TAATCAACGCTAG
*
12509 TAATCTACGCTAG
1 TAATCAACGCTAG
12522 TAA
1 TAA
12525 GAACCTAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (13 bp):
TAATCAACGCTAG
Left flanking sequence: Indices 11983 -- 12482
TCTAGTCTTGACCTGGGCTTTCTTCTTAAAGCCTTGAGCCGGGTATGAACTCGATTGTTGGTCGG
ATCTTGCTGGGTATTCCCACTTTGCTCGGATGGCGCCTTTGATTAGGACTTTTCCGCATTTCATC
TCAAAGAGGATCTAAGCTAACTAAGCTAAACAGTGCTTTTCTCTTCCTAAACCTAAAGAGTCAAA
GTCAAGCATTCCTTCAGGGCTTAGCTTAGGCCCCTTCCTAATCTAATGCCATGCCCAACAACAAG
GGAGTACGGCGTAGCCCCAGTGCATGTCCGGATGGAAGTGCGGTATGCCAAACGTGCATATGGCA
GCATCTCATGCCATTCTGGTGGTCATCTTCTCTATGACCCCTTTGATGTTCTTGTTCGCTGCTTC
AACTGCTCCGTTCATCTGAGGACGGTAAGCTGTAGAGTTCAGGTGCTTGATCTTGAAGCTCTTTC
ATTTTTGATTCTTACGTCGATTACTAGCGTTGATTACTAGTCTGA
Right flanking sequence: Indices 12525 -- 13024
GAACCTAACAGAGTCCATTAAGAAGAGGAGAGGACAGGTAAATGCCCTATTTTGATGAAGGAGAA
ACTTGCTATATTATTTTGTTTTAAGCCATGAAAATGGGATAGATAGAAGGATATAGATCACTACT
GCCAGTGGACGGATTTGACACCCAGGATATAGCAGTTACAAGCACTAAATTGTTAAATGGGTGAA
AGCCCTTTTTTGCAGAGCTGTCATCTTACCCTCTTCCTAAGATCGAGTGGTTTGACACTCCCTTC
TTACAGGGAGGGAGTGGTTGGCCCTGATACCGTGTTGGTGGCTTCGGATTGGATTGATAGACCTG
TGTGTGACTTGTCTCGCTCGAAATCCAACCTCTGCGTGTGTGGTTATCCCGGCAATCGTTTAAGG
GGAGCCGTGCGGGTGACTTCTCTTTCCGTATCAGTATGTCACTCCTTTTTCTTCACCCTTTTGTT
TTGGTTCGAGATCTGTGGTCGAGTTGCTAGAAAGGATCGCTCTTC
Found at i:34057 original size:22 final size:22
Alignment explanation
Indices: 34032--34077 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
34022 TTTCAAATGA
* *
34032 AATTCATATTCACATGAATTTC
1 AATTCAAATTCACATGAAATTC
*
34054 AATTCAAATTCATATGAAATTC
1 AATTCAAATTCACATGAAATTC
34076 AA
1 AA
34078 CCATGCCCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (22 bp):
AATTCAAATTCACATGAAATTC
Left flanking sequence: Indices 33532 -- 34031
AGACGGAGCTTGATTAGTTTCTGCTAGACGAGGAATGAGGAACATAACCAATACGGGGAACAAGG
GAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACGGGGACCTACACAT
ATTAGTACAGTATACCGGGGTCCCCGGCCAGAACCACACGTGCAAGTTTCCCTGCATGTGGCTCG
TCCGTGCTTTCCGAGACGCTGCCTGTGACTCAGCATGGGAGAAGGGGGCGGAACTGCATAGCATA
CTTTAGTGTTTAGAGCATTGTCCGAGTAAGTAGGCAGCGCCTACCAAGCAAAGCTTTCTTGAAGA
GGCTGGGCTGGTTCCTTTTCGGCGCCCGCTGGTGTAGATGTTGGGGCAAGGCAAGCCCCAGGAAA
GTATAGGTTGGCTCCCAGCTCCATCTCGGCCGGCATCCTGCAAACTACTACGCAAGTGGAGGCGT
TGCGTTAGCACTACACCTAACAAGCAGCTTTCATTTTTCAAATGA
Right flanking sequence: Indices 34078 -- 34577
CCATGCCCTATTTATTTGACTTGGACGCGCAGGTTCTACTTGATTTCTAATATGATCGCCTATAA
ACCAGAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCC
GCCTTCTCATCTCGGAGCGGGGGTGGGGCCCTGGAGCGAACTACTCATGTGCTGTGTTGCCCCAA
CCCAAGGAAGGGCATTTGGTGAGGAGCTACGGCCCGGTGGTTGACAAGCCACTTCAAGGAGGCGA
CTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGCCATTCCCATCCCAAGTGGTGGCCCGAT
TCGGCCTGGCCTGGTCGGGAAGAGATTCTAATAGAGACTACTGCTATCCGGGAATAGTTATCTAT
GTTAGCTAGCGGGGGCGGGCTTTCCGGTAGTCCCGCAGCGGCCTCTGACCGTCCGTCCCGTCTCA
TCTTTATTTGGCTATACTTGTAGCCAGCCATGTTAGCTCCACATG
Found at i:34058 original size:16 final size:17
Alignment explanation
Indices: 34023--34062 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
34013 GCTTTCATTT
34023 TTCAAATGAAATTCATA
1 TTCAAATGAAATTCATA
* *
34040 TTCACATGAATTTCA-A
1 TTCAAATGAAATTCATA
34056 TTCAAAT
1 TTCAAAT
34063 TCATATGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (17 bp):
TTCAAATGAAATTCATA
Left flanking sequence: Indices 33523 -- 34022
TGGGAGATCAGACGGAGCTTGATTAGTTTCTGCTAGACGAGGAATGAGGAACATAACCAATACGG
GGAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACGGGGA
CCTACACATATTAGTACAGTATACCGGGGTCCCCGGCCAGAACCACACGTGCAAGTTTCCCTGCA
TGTGGCTCGTCCGTGCTTTCCGAGACGCTGCCTGTGACTCAGCATGGGAGAAGGGGGCGGAACTG
CATAGCATACTTTAGTGTTTAGAGCATTGTCCGAGTAAGTAGGCAGCGCCTACCAAGCAAAGCTT
TCTTGAAGAGGCTGGGCTGGTTCCTTTTCGGCGCCCGCTGGTGTAGATGTTGGGGCAAGGCAAGC
CCCAGGAAAGTATAGGTTGGCTCCCAGCTCCATCTCGGCCGGCATCCTGCAAACTACTACGCAAG
TGGAGGCGTTGCGTTAGCACTACACCTAACAAGCAGCTTTCATTT
Right flanking sequence: Indices 34063 -- 34562
TCATATGAAATTCAACCATGCCCTATTTATTTGACTTGGACGCGCAGGTTCTACTTGATTTCTAA
TATGATCGCCTATAAACCAGAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTG
GAAGGGGAATGTTCCGCCTTCTCATCTCGGAGCGGGGGTGGGGCCCTGGAGCGAACTACTCATGT
GCTGTGTTGCCCCAACCCAAGGAAGGGCATTTGGTGAGGAGCTACGGCCCGGTGGTTGACAAGCC
ACTTCAAGGAGGCGACTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGCCATTCCCATCCC
AAGTGGTGGCCCGATTCGGCCTGGCCTGGTCGGGAAGAGATTCTAATAGAGACTACTGCTATCCG
GGAATAGTTATCTATGTTAGCTAGCGGGGGCGGGCTTTCCGGTAGTCCCGCAGCGGCCTCTGACC
GTCCGTCCCGTCTCATCTTTATTTGGCTATACTTGTAGCCAGCCA
Found at i:44583 original size:7 final size:7
Alignment explanation
Indices: 44571--44599 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
44561 ATGAGAGCTT
44571 TCTCATC
1 TCTCATC
44578 TCTCATC
1 TCTCATC
44585 TCTCATC
1 TCTCATC
44592 TCTCATC
1 TCTCATC
44599 T
1 T
44600 ATGGGCACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.41, G:0.00, T:0.45
Consensus pattern (7 bp):
TCTCATC
Left flanking sequence: Indices 44071 -- 44570
TTAGCCGATTTTGCGAGGCAAGAGCAACTGCTTCGCTCAAAGAGACCCTTACTGCTGAAGGCTCG
GGTTAAAAGGCGTGTGGCAAATGCTGCCCCTCAAAGTAACTACCAAACTTCTCCCTGTGGCGGGG
CATAATCAAAGACGGTGACAGATGTTGTCGCTCAATTCGTTCTTCACCCCCTCCCTGGACACAAG
GCAGTTACCACCTTTGCTGATTGATCGGTTCGTTAGGCTCGGGTCAGTCCCTTGATCCTAAGGGG
AAGGAAGGAACAGAAGCAAGCAAGCCGAAAGCAACCGTTCCTTCTTTCTGTGTATCTTGACTTTG
TTGTACTCGATTTCCCGAGGGTATATTGTACGATTAACGGAGGAAAGTCATGGATCACGGTTAGG
CATGCGAGACTTTGGCAGGGTACGATAAGCCGTAGTACGAGACGCTTTTTCAGGCTATATTTGCA
TTCTGGCTGTATTATCCGACCGGGTCGATGCAGTCATGAGAGCTT
Right flanking sequence: Indices 44600 -- 45099
ATGGGCACCTCTGTTTTAGGCTTTATATATCCCCATCCAGCTCTTAACCTTTGAACCGGGCTCCT
GTTCACGCATGCTTTTAGCTGGAAATGATTTCAGGTGAAGCTCACCCGTCTTGTTCTCATCTTAA
GGGAAGGCCCAGGCGCAGAAGGAAGACTCTTTGATCGGGTAGTTCCCCTTGTTCTCAGTCATCTT
AGGTGCAGTTGGCCAATCAAACTAATTACTCTAGTGGTTCCCTTGTTATTATCATAGTAATAGCA
GTTAGCCTCTAAACCAGCTCTTATTGTTCCAGTTGTCAGTGATGAAATAGAAAGAGAAAAACATT
CCATTTCATATCCAAATCAATCAAGTCAGTTTATGAAGGGAAATCCGTTAAACAAATAAAAAATT
CCTCCCCAATGAACGCTCAAGCACGACAGATTTACTTTGATAAGCGCACTAGCTGACTACGAGAT
CAGTCTCACCTCGAGTTCGACTACGGAACGGAATCCTACCTGTCT
Found at i:75619 original size:10 final size:10
Alignment explanation
Indices: 75600--75639 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
75590 CACTTGTTTC
*
75600 TGCTTCCTTT
1 TGCTTGCTTT
75610 TGCTTGCTTT
1 TGCTTGCTTT
*
75620 TGCTTGCTCT
1 TGCTTGCTTT
*
75630 TGCTTACTTT
1 TGCTTGCTTT
75640 AGCTCTTACC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.03, C:0.25, G:0.15, T:0.57
Consensus pattern (10 bp):
TGCTTGCTTT
Left flanking sequence: Indices 75100 -- 75599
ATGCCCTTCCGGAGGTGGGTGACCTGTCCTCGCTTCGTCAAAGGTTGACTCACTCCGCTGTACAG
CAAGAGTCACAGTAACAGTCCTAGCCTAAGAACAAGCCAAGAACAAGAGCCACACTCATCTGATT
AGCTCAAGGGCGCAAGCGCAAAGGCCAAGGCCACAGCAAGAGCAAGAGCAAGAACTGGTTACCGA
AGAACAAGCCGTGCGCGTGCAAGCGCTACAACCGTTCAATCGGGCACCTCAGCCCTCTCTCACTG
CCTTGGCTTGGCGGCTTTGATCCACCTTCCTAACCGGCTTGCTTCCCTCTCTTCTTTCTTTGTCA
GCAAGTTCTTGTCGCGGTGCAAGCGCTCCTACAACCGTTCACTCGGGCACCCGCCCTCTCTCACT
TACTAGCTCACTGACTTTTATTTCTTTTAAACCGAAGCGCTTCGCTTTGTCGCTTCGCTCCCGGT
GAACGTGCCTCTGGCACACTCACTTTTATTTAGCTCACTTGTTTC
Right flanking sequence: Indices 75640 -- 76139
AGCTCTTACCGTTCACTCGGGCACCTGCCCTCTCTCACTGGCTGGCTTGGCTGACTGGCTTGGCG
GAACAGCAAGAGCAAGAACAAGTTTAGCTGACAAGTGTGCGTTGGTCGGCGGTCCTCGCTCATCA
GATGAGCTGCGAGGCTTAGCTTGGCTGTACAGCAAGAGTCACAGGAAGAGTAAGAGTCCTAGCCA
TGTCATCCCAAGTTCCATGGCTGGACTGAGTGCGCCCCCTCCCAAACTGCAACAACAAAGAATAA
CCCTGCAACAACAAATCAAAGGCTTGATCGCGCTTGCACACTTACGATTATTTCGCTCTTTTACG
ATTATGAATATTGCTGTTCAAAATCAATATCTCTTTATCTTTCACTCTTATTTAGATTGAGTTCC
GGGATTACTTTCACTTTAATTCTTTCGGTCTCCAATTGCTTTAATTACTTGTGCTTGACTTAAAC
AAGTGACACTGCTTTTCTTATTCTTTAAGCCTAGAAAGATCATAT
Found at i:115387 original size:16 final size:17
Alignment explanation
Indices: 115364--115406 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
115354 TAATTTATTC
115364 TATTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
115381 T-TTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
115397 TATTCAATTC
1 TATTCAATTC
115407 GCCCTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTCAATTCAAATGAA
Left flanking sequence: Indices 114864 -- 115363
CGAGAAGATACTTCACACGGGAGGAATCGTTTGTCAAAAAAAGCTGATGCACGTAGCTCGCTGGA
AGCTAAGAGTCAACTAGCCCAAAAACGGGAATCGCTGTTTGAGTAGTTCCTTAATCCCTTCTTAC
TCATTACAGTCAAGTCATGCCACCAGCCAGCCGGGGCACATTGGCCTCAACGCTCGCGTTCTACG
TTTACTATGGGGTACTATTTTCCTTACCGGAAGCAAAGGGCTCATCTCAGTAGGTGCTTGTGCTG
TGGTTTTTAGTTCCTTGGCTTGTGTTCTAATAGTAACCACAGGAAAAAAGCGGGGAGCATTCTCT
AAAAAATAATGATTTAGGAATATGGTAGGGTTCATAGTCCCTAGTCTCGTTTTTGCCGAGCCTGC
AAACGTAGGAGCAAACTACTACGCAAGTGGAGGCGTTGCGTTAGCACTACACCTAACAAGCAGCT
TTCATTTTTCAAATTCAAATGAATATATATTAATTTAATTTATTC
Right flanking sequence: Indices 115407 -- 115906
GCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTGATTTCGGCATATGATCGCCTATAAACCA
GAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCGC
TGAAGCACAAAATGCAAGATTTCATAGAAGAAGGAAAAATCAACGTGGCGGATGAACAGGAAGCT
CCTAAGAACCCCAACGAAAAAATGGGAGAATAGAGCAGCCCCCTAGTCACGCTCCGGTCTCAACA
TGCTGGGCCGAGGAAGTGTCCGATTTCCAACATCCCCTACCATCACTACAATTAAAGCTATTAAT
GCTATCTGGCTTTGTGAGGAAGATCCCTCCCACTGGATCATCATGACCCCTACGTTACGGCTTCC
AAAGGCGATCCTAAGGGAAGAAGAATTTGGAAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGG
AAGCTCCACCGAAAGAAGAAGAGGAAATAAGAGGACTAGAGTTTC
Found at i:136367 original size:13 final size:13
Alignment explanation
Indices: 136349--136374 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
136339 AGAACTCATG
136349 TTTGCGCTTTTGA
1 TTTGCGCTTTTGA
136362 TTTGCGCTTTTGA
1 TTTGCGCTTTTGA
136375 GATTCCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.23, T:0.54
Consensus pattern (13 bp):
TTTGCGCTTTTGA
Left flanking sequence: Indices 135849 -- 136348
AATATGAAAGGGATCCCAATAGCAATAGGAAAAGCAGAGAGGAAAGAGGAAAAAACCATTTTTTT
ATTCAAGTCAGGCTGCTTTCAGGCGTGTGCTCGGGTCTTCTTTTTTCATTAATCCTATTCTAGAG
CCTAGATCGAAATCCATTCTGTCAATGACTTGATTTGGCGACTACTAGCAATCAATCGCCTCTCC
AATTGATTTGAGAAGTAGAGACATTGGTAAGAGAATGAGTATTCGTACATCTCCTCAGAGGCAGC
GTTCGGCGGCTTCTTTGTCTTAATCTAAGCCTCGGATCTTGACCAACCATTCTTAAAGTCAAGCT
TGACTTTAGTGAGACTGATAGGTGATCCCCTTTAGGGACTACTTATCTTGTCTTAAATGGCTCTT
TCACATAGTGATGCAAGGGTATTAAACCATTGCTTATTCCTAATTAACTACGTATCCACCCCCGC
CTACCAGCTCGGTTCAGCTCTGGGGAGGTCAGGGAAGAACTCATG
Right flanking sequence: Indices 136375 -- 136874
GATTCCTTCTGTCCCTTTCCTTTACCTCCGATCTCCCCCGTCGCAGTTAGTATGGCTTGGCTCTC
CACATAGTAGTTCTAATGGCCTTTGTGAGTAAGGGCATCACATCGTCTCTTCTAAAGGATACCCA
TTCTTAACTATTCCATCCTATGGTCTGGTTGGAATAGCGGTACCACTAAAGAAGTCTGTTTCGCT
AGCCCCGATGACTTTGCGATAACTAGCTTGGGGAAACCCCTCCCTTTACGAGAGGGGACTAGAAA
ATGCCTGGACCCATTAGCATATGGAGTACAGTATACTAGTGACCGTGAGTTAGCCTATGCCGAGG
TGCAAAAGAAAGCATTCATAAAGCCTCTGAAACCGTTTCCAAGACATCCCATCCATGAATATGCT
ATGCTGCTTACTCTTCCGCTTAACGCACAAAAGATGGGAACTGTTGGGTACTCTAACACCATCTG
GCTGCCTCTGATCTTTTCGTTGAAGAAGCCTTTTCCACTACGGCG
Found at i:164154 original size:32 final size:32
Alignment explanation
Indices: 164118--164181 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
164108 TTATGACACC
164118 AATCATTTACGAGTGAGTATTACACCAAGAAT
1 AATCATTTACGAGTGAGTATTACACCAAGAAT
164150 AATCATTTACGAGTGAGTATTACACCAAGAAT
1 AATCATTTACGAGTGAGTATTACACCAAGAAT
164182 TGACAAGCGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (32 bp):
AATCATTTACGAGTGAGTATTACACCAAGAAT
Left flanking sequence: Indices 163618 -- 164117
TAGCTTCTGCTATCTTTTTTTCAATTTGGATTTTTTATGCTCCTAATGTTTTGGGGCATCCCGAC
AATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACC
GATCCATGCCATTCTTCGTAGTATACCTGACAAATCGGGAGGTGTAGCCGCAATAGCACCAGTTT
CTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTATGTGCGTAGTTCAAGTTTTCGCCCG
ATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATCGCTTACTACTAGGTTGGATCGGATGTCA
ACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTCCTCCTTTCGTTTTCTTCTTGTTCTTTG
CCATAACGCCCATTCCGGGACGAGTTGGAAGAGGAATTCCTAATTCTTACACGGATGAGCCCTCT
AGCCCTGTAAGTCACACCTGATCAGTGAAAAAATGTTATGACACC
Right flanking sequence: Indices 164182 -- 164681
TGACAAGCGGATGCGTTTTCTAGTTGGCTATGTTGATATAGCGAAAATATAATAAACTATAGGGC
TGGCTTAACTTTCAAGGGGGCTTTGTTCCCGAAACTCCCCTCCGCTTCCTTCCCCTCTTTCGGCC
ACGAAAGAAAAAGAAAAAGAAGGGACGCTTTCGCTGACCAAAACACATGGTCTAAAGTCTTAAAA
ACAGCTAACAACAGAGAGAGATATTCACTTACAGAACTTTCCCTCCCGTGACCCGTACCAGAAAG
AGGTTTTCTCACAGCACCTTAGTTTCCTAACAGCTTTACGGAACTTACCTTTAGAGCACGTGAAG
GAGTCAGAGGAGATAGAGCTTGACCCTCGAAAACAGAGCAGAAAGAAAAACTATCTGATCAAAGC
CGGAGATTGATTTTGTCGACTTGACTGAGAAAGCAACACTTTGAACTGCAACTAGAGGGGCTTCG
CACGCAACGAAATTCTCTTTTCTAAGTCTCCCAAGCTTACCAAGA
Found at i:178970 original size:34 final size:34
Alignment explanation
Indices: 178932--178998 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
178922 CTTTCAGCCC
178932 GTACTTGACCTGCTTCTTTTTGTACTTGAAGACT
1 GTACTTGACCTGCTTCTTTTTGTACTTGAAGACT
178966 GTACTTGACCTGCTTCTTTTTGTACTTGAAGAC
1 GTACTTGACCTGCTTCTTTTTGTACTTGAAGAC
178999 GGTAGTCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.43
Consensus pattern (34 bp):
GTACTTGACCTGCTTCTTTTTGTACTTGAAGACT
Left flanking sequence: Indices 178432 -- 178931
AGATCTGGTTGGTCCAGCTCATCTCAAAAGGCTGGAGGAGATTATCGAATCCGAGGTTTTGGGGA
TGGATACTCCGATTGGGATAGAAGATTCAAGGTTGGGCCATTTCTTCTTATCGAATGCGGGGAAA
GAACTCTTGAGATTCTCCCACCGGGGAAGGGTAGAGGATTATAGTATTAAGGAGAAGGAAGCTAT
TGATCTCCAAGGGAGGAGCCCGAAAAAGATGAGTTGTCATCAGCCCACCAACAGGGGAGTATCTT
CAGTCGATATCCTCTGCCTTAAGATTGACCAAAGGAAGGAGATTGAAGCGGAAAAGAGAAGCTCC
TCCCTCCCACCCCTTCGAGATATTGTTTCAGAGAATACGACACCGGAAGAGAAGATAAGGAAATA
AGCTATCAAAGGAAAAGAGAAGCGTGGCCTCTTCGACTGCTACATCATCATTGCTGGCCGCAGCA
CCGGCCCCGAAATGCCCTTCATTTGTTTATCGCTACTTTCAGCCC
Right flanking sequence: Indices 178999 -- 179498
GGTAGTCTTAAAAGTGACTTTGACTGACGTCAACTCCAACCATCGTCAGAAGATAGGAGAGAGCT
TCGATCTCTTTCCGTCATCCCAGAGCAGAGGAAATCATCTTAGAAATAGGGCTAGACAAAACAAA
GGTACTCCGAAGCTAATGACAGAGCAGAGTACCTCCTCGTTAAATGGAAAGCGATCCTGTCTACA
TACTAGGCTAAAAATGGGCACTTCAAGCGTGGGTGGGTCTACTATCCTACAGTTTATAGGGTGAA
ATAAGTGCCTTCAGCTTCAAGCGAAAGCATGTGATTTCATTCCTAAATGCATTTCTCTTCCAATC
GTTGAGACGGACGGGATGATCGGCCGGGCAAAGGGCAGCTCATTCGTTCCTATCCCGCAGTGCAC
TGCTAATCAGTCATAGCTTGTGTTCGGAGCTATCTGCTGTCCATCGTTCCGAGCTAAGCAAAGCA
GCTAAGCGATCAATCTCCCTCACTCAGCCCTACCAAATCCGTCGA
Found at i:181895 original size:34 final size:33
Alignment explanation
Indices: 181853--181918 Score: 123
Period size: 34 Copynumber: 2.0 Consensus size: 33
181843 AAATGAGATC
181853 AAAAGAAGACTAGGAATAAGACTTATTGTAGTG
1 AAAAGAAGACTAGGAATAAGACTTATTGTAGTG
181886 AAAAGGAAGACTAGGAATAAGACTTATTGTAGT
1 AAAA-GAAGACTAGGAATAAGACTTATTGTAGT
181919 ATCAAGCATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 4 0.12
34 28 0.88
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (33 bp):
AAAAGAAGACTAGGAATAAGACTTATTGTAGTG
Left flanking sequence: Indices 181353 -- 181852
TCCCACATCTTATTAAACATCTTCTTTAGTGGGCTCAAGTCAGCTCACATTCCCAAGGATACCCC
ACCGGAAGGCCTGAAGGCAATGATAGGGCAAATCACCGCACCTCAACCCATCACCTTTACCGAAA
AGGATGCAGCGCATACGGGCCATCCGCGCATGTTGCCTCTCTACATAACTGACTACATAGAGGCG
AGGTTCTTTTTGTTTTTCATCCCTCAATCGGCGGGGCCTCACTGTGCCCTGCGGGGCCTCATTCG
CTCGGGTCTAATCAATCCCATTAGCCCCTCACTGCAAGGCAACACCGATTAGCAACAGTAGCATC
CAAGGAAGAATGCATCCAACCCTTCGATCTCTTCTGACCACCGAACCATGGTTCACTCCTAAGCT
ATCACTTTTGCAGCTATATAAAGATGAAAAATTCGAGAAAAAACGGAGATGTTATTAGTAGAAAA
CCAGGCTATGACTTTTGCAGCTATATAAAGATTCGAAATGAGATC
Right flanking sequence: Indices 181919 -- 182418
ATCAAGCATAAGGAGTTGTTCTTTAACTTCCTTCAGGCCAGAAACATTGACTCCAGAAGAATTAA
AGGGAGCAGTTGAGCAGATGGCCTCAATCAACGCTCTCACCTTCACAGAAAGAAGCTGAATCAAA
AGAAGCATCCATCAACCGGTGCATAAACAGAGGCATAAATGGAAGCCGTTGTTTTAGCCGCTGCT
TATTACATTTTGACCAGTCGTAATACTGAGAGCTTTGAGGTGCGTTTTATGGGTCGTAAGAGTAA
GAGCGTTCTTTATTATTAGAATCATTTCTATCTTCATCTTGATTCCTTTATGAAACGCTTATTCG
GCCAAATCTTAATCGAATTGCCATGCTCTAATGGTAGTAAGAGTGAGTGCCGAAGGTGGGGAAGC
TAGGAAAGAAGCTAGGGCTGCTAGGGATGTTAGGTCTAAGGCAGGGTGTTACACCCGGAGTGCGT
ACCGTACCGACTGAAGTCTCTCTTTCAGTGCCATTCAGCTTCCTT
Found at i:182661 original size:19 final size:19
Alignment explanation
Indices: 182587--182655 Score: 111
Period size: 19 Copynumber: 3.6 Consensus size: 19
182577 AACGCGCAAC
182587 GTATTTCGATACATTACCT
1 GTATTTCGATACATTACCT
**
182606 GTATTTCGATACATTACAA
1 GTATTTCGATACATTACCT
*
182625 GTATTTCGATACATGACCT
1 GTATTTCGATACATTACCT
182644 GTATTTCGATAC
1 GTATTTCGATAC
182656 TTGACCAAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (19 bp):
GTATTTCGATACATTACCT
Left flanking sequence: Indices 182087 -- 182586
ATGGAAGCCGTTGTTTTAGCCGCTGCTTATTACATTTTGACCAGTCGTAATACTGAGAGCTTTGA
GGTGCGTTTTATGGGTCGTAAGAGTAAGAGCGTTCTTTATTATTAGAATCATTTCTATCTTCATC
TTGATTCCTTTATGAAACGCTTATTCGGCCAAATCTTAATCGAATTGCCATGCTCTAATGGTAGT
AAGAGTGAGTGCCGAAGGTGGGGAAGCTAGGAAAGAAGCTAGGGCTGCTAGGGATGTTAGGTCTA
AGGCAGGGTGTTACACCCGGAGTGCGTACCGTACCGACTGAAGTCTCTCTTTCAGTGCCATTCAG
CTTCCTTAGTTACCCGCTCGGGACTTTCAAGTGGAAAGCCCCATCGCTCTATTAGCAGCAGGAAG
AGTTTCTCTCTGAAACCGGAGCAAGGGCCGTTCCCCAAGGGTTACCGTTACGCTCGGGCCTATCG
ACTAAGCAAGAAAACGCCCTATATATCTAAAGGCTAACGCGCAAC
Right flanking sequence: Indices 182656 -- 183155
TTGACCAAAGGGGGACAAATGAGAGAAGCACTCTCGACCAGAGAGAGTGCGAGCGGATACCACAG
GCTTACAATTTGTTTCGTTTCATGATAGCCGTATTCAACTACAAAAAAGAAGCGGTCTTCAAGTA
CTAAAATATGCAGGTAAAGTACGGTCTGCAAAGTCGCTAACAAACACAGTGAATGCTTGAGGTCA
AATCCTACCGTATTACTCGATGAAGGCAATATTAATGCTAATGAAACAAAATAAGGAATTTAAGT
ATTCAAATGAAATAGAATAAGATGGAACAGGCATATCCCAGCCAACCTGTATAGTCTAAAACATA
GAACTAGTTTTCGCAAGTCGTTCTGGAGGTGGCCTATGGTCCTACTGTTGACAGTGACGAGGGGC
CAAAGTTGCCCGGCCAAAGGGCAATGGGGAGCGAGAGCTCTATCTGAAAATGGAAATGCTTTCTA
TTTCCGGCTTAGCTAAGTTTACCAGATCGAGAGGATACCAATCCT
Found at i:196497 original size:45 final size:43
Alignment explanation
Indices: 196363--200712 Score: 1708
Period size: 40 Copynumber: 104.7 Consensus size: 43
196353 GGAGGGGCGG
* * *
196363 GGTGGGG-GGGTG-GTGTGGAGGTGGTGGGT--GTGTGGGGGGGG
1 GGTGGGGTGGGTGTG-GTGGGGGTGG-GGGTGGGTGTGGGTGGGT
*
196404 GGTGGTGGTGGG-GT-GTGGGGGTGGTGGT-GG-G-GGGT-GGT
1 GGTGG-GGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * *
196442 GGTGGGGGTTGGTGGGGTGGGTTGTGGTGG-GGGTGGGGGTGGGT
1 GGT-GGGGTGGGTGTGGTGGG-GGTGGGGGTGGGTGTGGGTGGGT
* * *
196486 -GT-GGGTGGGT-TGG-GGGGGT-GGGGTTGGTGGGGGTTGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGG-TGGGT
*
196525 GGT-GGGTGGGTGTGGGTGTGGGG-GGGGGTGTGG-G-GGTTGGGT
1 GGTGGGGTGGGTGT-GGTG-GGGGTGGGGGTG-GGTGTGGGTGGGT
* * *
196567 GGTGTGGTGGG-GT-GTGGGGGTGGTGGG-GTGTGTGGTGTGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGG-GGGTGGGTGTGG-GTGGGT
*
196609 GGTGGGGT-GGTG-GGTGGGGGTGTGGGGGTGGGTGTTGGTGGGT
1 GGTGGGGTGGGTGTGGT-GGGG-GTGGGGGTGGGTGTGGGTGGGT
*
196652 GGGGGGGGTGGGGTTGGTGGGGTGGGGGTGGGGGTGGGTGTGTGGGGTGGGT
1 -GGTGGGGT-GGG-T-GT--GGTGGGGGTGGGGGT-GG-GTGT-GGGTGGGT
* * *
196704 GG-GGGTGTGGTTGGGGTGGGGTTGTGGGGGGTGGGTGTGGGTGGGG
1 GGTGGG-GTGGGTGTGGTGGGG--GT-GGGGGTGGGTGTGGGTGGGT
*
196750 GGTGGGGGTGTGGGTGGGGTGGTGTTGGGTGGGGGTTGGGTGGTGGGT-GGT
1 GGTGG--G-GTGGGT---GTGGTG-GGGGTGGGGG-TGGGT-GTGGGTGGGT
* *
196801 GGTGGGGTGGG-G-GGTGGTGTTGGGGGTGGGTGTGGGT-GGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
196841 GGGGGGGT-GG-GTGGTGTTGGGTGGGTGGTGGTGTTGGGGGTGGGTT
1 GGTGGGGTGGGTGTGGTG-GGGGTGGG-GGTGG-G-TGTGGGTGGG-T
* *
196887 GGTGGTGTGGG-G-GG-GGGGGTGGGGG-GGTTGT-GGT--G-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
196922 GGTGGGGTGGG-GTGGTGGGGGT--GGGTGGGTGT-GG-GGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
196960 GGGTGGGGTGGGGTGTGGTTGGGGGT-GGGGTGGGGGTGGGGTGGGG
1 -GGTGGGGT-GGGTGTGG-TGGGGGTGGGGGTGGGTGT-GGGTGGGT
* *
197006 GGTGGTGG-GGGGGT-GTTGGGGTGGGGTGTGGGGTTGTGGGTGGGT
1 GGTGG-GGTGGGTGTGGTGGGGGTGGGG-GT-GGG-TGTGGGTGGGT
*
197051 -G-GGGGT-GGTGTTGGGTGGGGGTGGTGGGGTGGG-GTGGTTGGG-
1 GGTGGGGTGGGTG-T-GGTGGGGGT-G-GGGGTGGGTGTGGGTGGGT
* * *
197093 GGTGGGGTGTGTG-GGTGTGGGG-GGTGGGGGGGTGGGGGTGTGG-
1 GGTGGGGTGGGTGTGGTG-GGGGTGG-GGGTGGGTGTGGGTG-GGT
* *
197136 GGTGGGTTGGG-GTGG-GGTGGGGGGGGGTGGGTGTTGGGTGGG-
1 GGTGGGGTGGGTGTGGTGG-GGGTGGGGGTGGGTG-TGGGTGGGT
197178 GGTGGGGGTGTGG-GTGGTTGGGGGGGTGGGGTGTGGG-GT-GGTGGGT
1 GGT-GGGGTG-GGTGTGG-T--GGGGGTGGGG-GTGGGTGTGGGTGGGT
* * * *
197224 -GTGGGGGGGGGGTTGT-TGGGT-GGGGTGGGT-TGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGT-GGGTGGGT
* *
197263 GGTGTGGGTGGGGGTTGTGGGTGGTGGGGGGTGGGTG-GGG-GGGT
1 GGTG-GGGTGGGTGTGGTGGG-GGT-GGGGGTGGGTGTGGGTGGGT
*
197307 GGGTTGGGGGTGTTGG-GT-GTGGGGGTGGGGTGGGGGTTGTGGG-GGTGT
1 -GG-T-GGGGTG--GGTGTGGTGGGGGTGGGG-GTGGG-TGTGGGTGG-GT
* * *
197355 GG-GGGGTGGGTGGGGTGTGGGGTTGGGGGGTGGTGGGGGGGTGGGT
1 GGTGGGGTGGGTGTGGTG-GGGG-T-GGGGGTGG-GTGTGGGTGGGT
*
197401 GGTGGGGTGGG-GTGGTGTGGGGGTGGGGG-GGGGGTGGGGTGGGT
1 GGTGGGGTGGGTGT-G-GTGGGGGTGGGGGTGGGTGT-GGGTGGGT
* * * *
197445 -GTGGGG-GGGGGTGG-GGGGGT-GGTG-GGGTGGGGGTGTG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
197482 GGTGGGGTGGGGGTGG-GGGGGTGTGGG-GGGTGT-GGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
*
197521 GGTGGGGTGGG-GTGG-GGTGTGG-GGGGGTGTGGTGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGG-G-GGTGGGGGTG-GGTGTGGGTGGGT
* * *
197563 GTGTGGGGGGGGTG-GGTGGGGGTGGGGGGGGGTGTGGGTGGGGGG
1 G-GTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGT--GGGT
* *
197608 GGTTGGGTGGGGGTGTGG-GGGGGTGGGTGGGTGGTGTTTGGGTGGG-
1 GG-TGGG-GTGGGTGTGGTGGGGGT-GG-GGGTGG-GTGTGGGTGGGT
* *
197654 GGTGGGGGGTGGTGTGG-GGGTGG-GGGGTGTTGGGGGTGGGTGGG-
1 GGTGGGGTG-GGTGTGGTGGG-GGTGGGG-G-TGGGTGTGGGTGGGT
*
197698 GGTGGGGTGGG-GGGGTGGGTGTTGTGGGGGGGTGGGTGTGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGG-G--GT--GGGGGTGGGTGT--GGGTGGGT
* * * * *
197746 GGTGGGTTGGGGGGGGT-GTGGTGGGGG-GGGTGGGGGTGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
197787 GTGTGGTGG-GGGTGTGG-GGGGGTGGTGGTGGGTGGGGGTGGG-
1 G-GTGG-GGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
*
197829 GGTGGGTGGTGGGGGTGG-GGGGGTGGGGTGTGGG-G-GGG-GGTGT
1 GGT-GG-GGTGGGTGTGGTGGGGGTGGGG-GTGGGTGTGGGTGG-GT
* *
197872 GGGGGGGTGGG-GTGGT-GGGGTGGGGG-GGG-GGGGGTGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGT-GGGT
* * *
197912 GGTGGGGGGGGTGGGGTGGGGTGGTGTGGGG-GGGTGGTTGGTGGGT
1 GGTGGGGTGGGTGTGGT-GGG-GGTG-GGGGTGGGT-GTGGGTGGGT
* * *
197958 -G-GGGG-GGGTGGGGTGGGGG-GTGGG-GGGTGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
197995 GGGGGGGGGGGTGTGGGTGGGGGGTTGGTGTGGG-GTGGG-GGGT
1 GGTGGGGTGGGTGT-GGT-GGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
198038 GGGGGGGGTTGGG-G-GGTGGGGTGTGGTGGGGTGGG-GGGGGTGGGG
1 -GGTGGGG-TGGGTGTGGTGGGG-GT-G-GGGGTGGGTGTGGGTGGGT
* * *
198083 GGTGGGGTGTTGG-GTGGTGGGGGGGGTGGGTGTGGGGGGGTGTGGGT
1 GGTGGGGTG--GGTGTGGTGGGGGTGG-GGGTG-GGTGTGG-GTGGGT
* * *
198130 TGTGGTGGGGGGTGT-GT-GGGGTGGGGGGGGGTGT-GGTGGG-
1 GGTGG-GGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
198170 GGTGTGGG-GGG-GTGGTGGGGGT-GGTGTGGGGGTGGGGGGGG
1 GGTG-GGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
*
198211 GGT-GGG-GGGTGGGGTGGGGGTGGGGGTGGG-GTGGGTGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGT--GGGT
*
198253 GTTGGGGTGGG-G-GGTGGGGTGGTGGGGGTGGG-G-GGGTTGGG-
1 GGTGGGGTGGGTGTGGT-GGG-GGTGGGGGTGGGTGTGGG-TGGGT
*
198294 GGGGGGGT-GGTG-GGTGTGGTGGTGGGGGT--GTGTGGGTGGGT
1 GGTGGGGTGGGTGTGGTG-GG-GGTGGGGGTGGGTGTGGGTGGGT
*
198335 -GTGGGG-GGG-G-GGTGGGGGTGTGTGGG-GGG-G-GGGTTGGT
1 GGTGGGGTGGGTGTGGTGGGGGTG-G-GGGTGGGTGTGGGTGGGT
198373 GG-GGGGT-GGTG-GGTGTGGGGTGGGGGGTGGG-GTGGG-GGGT
1 GGTGGGGTGGGTGTGGTG-GGGGT-GGGGGTGGGTGTGGGTGGGT
* *
198413 GGGGGGGTGGGGGTGG-GTGGGG-GGGGGTGGG-GTGGGTGGGGTT
1 GGTGGGGTGGGTGTGGTG-GGGGTGGGGGTGGGTGTGGGT-GGG-T
* * * *
198456 GGGTGGGG-GTGTGGGGTGGTGGTGGTGGGTGGGGGTGGG-GGGT
1 -GGTGGGGTGGGTGTGGTGGGGGTGG-GGGTGGGTGTGGGTGGGT
* * * *
198499 GGTTGGGGGGGGTGTGGGGGGGGT-GGGG-GGTTGGGGGT-GGT
1 GG-TGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
198540 GG-GGTGTGGGGGTGG-GGTGGGTGGGGG-GGGTGT-GG-GGGT
1 GGTGGGGTGGGTGTGGTGG-GGGTGGGGGTGGGTGTGGGTGGGT
198579 -GTGGTGG-GGGTGTGGT-GGGG-GGGGGT--GTGT---TGGGT
1 GGTGG-GGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
198614 GGTGGGGGGGGTGTTGTGGGTGGTGGGGG-GGGTGGGGGGTTGGT
1 GGTGGGGTGGGTGTGGTGGG-GGTGGGGGTGGGT-GTGGGTGGGT
* *
198658 GGGGGGGGTGGGT-TGGTGGGGG-GGGGG-GGGTGGGGGTGGGT
1 -GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
198699 -G-GGGG-GGTTGT-GT-GGGGTGGTGGGTGGGTGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGG-GGGTGGGTGTGGGTGGGT
*
198737 GG-GGGG-GGGTGTGG-GGGTTGG-GGGGGTGGGTGTTGTGG-GGGG
1 GGTGGGGTGGGTGTGGTGGG--GGTGGGGGTGGGTG-TG-GGTGGGT
* *
198779 GGTGGGGGGGGTG-GGTGGGGGTGGGGGTGGTTGGTGGG-GGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGT-GTGGGTGGGT
* * *
198821 GGTGGTGG-GGG-G-GGTGGGTGGTGGGTGGTGTGTGGGGGGGGGGT
1 GGTGG-GGTGGGTGTGGTGGG-GGTGGG-GGTGGGT-GTGGGTGGGT
* *
198865 GG-GGGGTGTGG-GGGGTGGGTGTGGGGG-GGG-GTGGG-GGGT
1 GGTGGGGTG-GGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
198904 GGGTGGGG-GGGGGTGGTGGGGGTGGGGGTGGGGGGGGGTGGGT
1 -GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
198947 GGGGTGGGGGGGGTGTGG-GTGGGTGTGGGGTGGG-G-GGGTGGGT
1 --GGTGGGGTGGGTGTGGTGGGGGTG-GGGGTGGGTGTGGGTGGGT
* *
198990 GGTGGGG-GGGGGTGGTGGGGG-GGGGG-GGGTGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
199029 GG-GTGGTGGGTGTGGGGGGGGGTGGGTGGGGGGTGTGGG-GGG-
1 GGTGGGGTGGGTGT-GGTGGGGGTGGG-GGTGGGTGTGGGTGGGT
* * *
199071 GGTGGGG-GGTTG-GGTGGTGGGTGTGGGTGGG-GTTGGTGGGT
1 GGTGGGGTGGGTGTGGTGG-GGGTGGGGGTGGGTGTGGGTGGGT
*
199112 GGTGTGG-GGG-G-GGTGGGGGT-GGGGT-GG-G-GGGTGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGT-GGGT
* *
199149 GGT-GGGTGGGGGTGGTGGGGGT-GGGGTGTGGTG-GGGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTG-GGTGTGGGTGGGT
* * *
199190 GGTGGGTGGTGGGTG-GGGGGGGGTTGGGGT-GGTGGGGGTGTGGGTT
1 GGT-GG-GGTGGGTGTGGTGGGGGTGGGGGTGGGT-GTGG-GTGGG-T
199236 GGT-GGG-GGGT-TGG-GGTGGGTGGGGG-GGGTG-GGTGTGGGGTT
1 GGTGGGGTGGGTGTGGTGG-GGGTGGGGGTGGGTGTGG-GT-GGG-T
*
199277 GG-GTGGGTGGG-GTGGTGGTTGGGTGGGGG-GGGGGTGGG-GGGT
1 GGTG-GGGTGGGTGTGGTGG--GGGTGGGGGTGGGTGTGGGTGGGT
* *
199319 GGTGGTGGGGGGTGT-GTGGGGGGTGGGGGTGGGGTGTGTGGGGGGT
1 GGTGG-GGTGGGTGTGGT-GGGGGTGGGGGT-GGGTGTG-GGTGGGT
199365 -GTGGGG-GGGTG-GGTGGGTTGG-GGGGG-GGGTG-GGGTGTGG-
1 GGTGGGGTGGGTGTGGTGGG--GGTGGGGGTGGGTGTGGGTG-GGT
* * * *
199404 GGTGGGGGGGGTGT-GTGGGGGGGGGTGGTGGGGGTGGGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGG-GGTGGGTGTGGGTGGGT
* *
199447 GG-GGGG-GGGTGTTGT-GGGG-GGGGG-GGGTGTGGGGTGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGT-GGGTGGGT
* * * * * * *
199486 GGGGGGGT-GTTGTGGGGGGGGGGGGGGGGGGGGTGGGGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGT-GGGTGGGT
* *
199529 GG-GGGTGTGGGGGGTGGGGGGGGTGGGGG-GTGGTGTGGG-GGGT
1 GGTGGG-GT-GGGTGTGGTGGGGGTGGGGGTG-GGTGTGGGTGGGT
* * *
199572 GG-GGGGGGGGGGGGGTTGGGGG-GGGGGTGGGGGGTGTGTGGTGGG-
1 GGTGGGGTGGGTGTGG-TGGGGGTGGGGGT---GGGTGTG-GGTGGGT
* *
199617 GGT-GGG-GGGTGTTGGGGGGGGTGGGTGGGGGGTG-GGGTGGG-
1 GGTGGGGTGGGTG-TGGTGGGGGTGGG-GGTGGGTGTGGGTGGGT
* * * *
199658 GGGGGGGGGGGTGGGGTGGGGGTGGGGG-GGG-GGGGGTGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
199699 -GTGGGGGGGGGGTGG-GTGGGGTGGTGGG-GGGTGGGGGTGTGGG
1 GGTGGGGTGGGTGTGGTG-GGGGTGG-GGGTGGGTGTGGGTG-GGT
* *
199742 GGTGGGG-GGGGGTGGGGGGGGT-GGGG-GGGT-T-GG-GGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
*
199778 GG-GGGG-GGG-GTGGT-GGGGTGGTGGGTGGG-GTGGGTGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGG-GGGTGGGTGTGGGTGGGT
*
199817 GGTGGGG-GGG-G-GGTGGGGG-GGGTGGTTGGGTGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGG-GG-TGGGTGTGGGTGGGT
* * *
199857 GGTGGGGTGGGTG-GG-GGGGGGGGGGGGGGGTGGGGGT-GGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
*
199897 GG-GGGGTGGGGGGTGG-GGGGGTGGGGGGTGGG-G-GGG-GGG-
1 GGTGGGGT-GGGTGTGGTGGGGGT-GGGGGTGGGTGTGGGTGGGT
* * * * *
199936 GGTGGGGGGGGTGGGGGGGGGGTGGGGGGGGGGGGTGGG-GGGT
1 GGTGGGGTGGGTGTGGTGGGGGT-GGGGGTGGGTGTGGGTGGGT
* * * *
199979 GGGGGGGGGGGGGTGGTGGGGG-GGGGG-GGG-G-GGGTGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
200018 GGGGGGGTGGGTG-GGGGGGGGGGGGGGTGGG-G-GGGTGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
200058 GGTGGGGGTGGG-G-GG-GGGGG-GGGGG-GGG-GGGGGGGGGG
1 GGT-GGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * * * * * *
200096 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
200138 GG-GGGGTGGGGGGTGGTGGGGG-GGGGG-GGGGGGGGGTGGG-
1 GGTGGGGT-GGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
200178 GG-GGGG-GGG-G-GGGGGGGGTGGGGG-GGGGGTGGGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * * *
200216 GGTGGGG-GGG-GGGGGGGGGGTGGGGG-GGGGGGGGGGGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * * * *
200256 GGGGGGGTGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGT-GGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
200297 -GTGGGGGGGGTGGGGTGGGGGTGGGGG-GGGGGGGGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
200337 GGGGGGGTGGG-GTGGGGGGGGGTGGGGG-GGG-G-GGGGGGGT
1 GGTGGGGTGGGTGT-GGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * *
200377 GGT-GGGTGGG-G-GG-GGGGGTGGGGGGGGGTG-GGGGGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
200415 GGTGGGG-GGGTG-GGGGGGGGTGGGGG-GGG-G-GGG-GGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * * * * * * * *
200452 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * * *
200495 GGGGGGGGGGGGGT-GTGGGGGTGTGGG-GGGTGGGGGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
200536 -GTGGGG-GGG-G-GG-GGGGG-GGGGGGGGGT-TGGG-GGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * * * * *
200571 GGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG-G-GGGGGGGT
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
200612 GG-GGGGGGGGGGTGGTGGGGG-GGGGG-GGGTG-GGG-GGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* * * *
200649 GGGGGGGTGGG-G-GGGGGGGGGGGGGGGGGGTG-GGGTGGG-
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
* *
200688 GG-GGGG-GGGGGGGGT-GGGGTGGGGG
1 GGTGGGGTGGGTGTGGTGGGGGTGGGGG
200713 GGGGGGGGGG
Statistics
Matches: 3507, Mismatches: 319, Indels: 969
0.73 0.07 0.20
Matches are distributed among these distances:
33 5 0.00
34 5 0.00
35 33 0.01
36 77 0.02
37 112 0.03
38 201 0.06
39 363 0.10
40 542 0.15
41 448 0.13
42 401 0.11
43 427 0.12
44 323 0.09
45 217 0.06
46 127 0.04
47 75 0.02
48 55 0.02
49 35 0.01
50 16 0.00
51 25 0.01
52 18 0.01
53 2 0.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (43 bp):
GGTGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGTGGGT
Left flanking sequence: Indices 195863 -- 196362
GGGGGGGATTGGGGATGGCAGGTGGGGGTGGGTGGGGGGGGTGTTGGGTGTGAGGTTGGTGTACT
ATGGTGGGTGTTGAAAAGAGGAGAATGGGTGGATGAGTTTTTGTGTAGTGGGGGGTGGGGACATA
GAGCCACACATTCACAAAGCGGATAGGGGGGGGTAGGTAGCGATCAACAAGTAGGAGGGTAGGCA
TACAGGGGGAAAGTGATGATACTGAGTACAAGTTGGGAAGGTGTTGAGTGGTGAGTGTGGTAGGG
AGGAGGGAGTGATGTAGTGGGGGTGTTGGTGATCTGGGATGTGGGAGGGGTTGGTTGGGGGGTGG
GTGTGGTATATGTCAGTGTGGGGTGGTATGTCTCTAGGTAGAGGAATTAGATGTTTTGGGTGTTT
GTGGTTGGGGGTAGAGTATGTTTGGGGGGGGGGGGGGGATGAGGGTGTGATGGAGAGTGAGAGTG
TGGGTAGTGTGAGGGTGTGGGAGGTAGTGGGAGGGGGAGGGGCGG
Right flanking sequence: Indices 200713 -- 201212
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGTGGGTGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGTGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTG
GGGGTGGGGTGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGG
Found at i:196591 original size:178 final size:172
Alignment explanation
Indices: 196364--201723 Score: 2256
Period size: 161 Copynumber: 31.9 Consensus size: 172
196354 GAGGGGCGGG
* * *
196364 GTGGGGGGGTGGTGTGGAGGT-GGTGG-GTGTGTGGGGGGGGGGTGGTGGTGGGGTGTGGGGGTG
1 GTGGGGGGG-GGTGTGGGGGTGGGTGGTGTG-GTGGGGTGTGGG-GGTGGTGGGGTGTGGGGGTG
196427 GTGGTGGGGGGTGGTGGTGGGGGTTGGTGGGGTGGGTTGTGGTGGGGGTGGGGGTGGGTGTGGGT
63 GTGGTGGGGGGTGGTGGTGGGGG-TGG-GGGGTGGG-TGTGGTGGGGGTGGGGGTGGGTGTGGG-
* *
196492 GGGTTGGGGGGGTGGGGTTGGTGGGGGTTGGGGGGTGGGTGGGTGTGGGT
124 GGGGTGGGGGGGTGGGGGTGGTGGGGG-TGGGGGGTGGGTGGGTGTGGGT
*
196542 GTGGGGGGGGGTGTGGGGGTTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGTGGTGTGG
1 GTGGGGGGGGGTGTGGGGG-TGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTG-GGGGTGG
*
196607 -GG-GGTGGGGTGGTGGGTGGGGGTGTGGGGGTGGGTGTTGGTGGGTGGGGGGGGTGGGGTTGGT
64 TGGTGG-GGGGTGGT-GGTGGGGGTG-GGGGGTGGGTG-TGGTGGG-GGTGGGGGT-GGG-T-GT
*
196670 GGGGTGGG-GGTGGGGGTGGGTGTGTGG-GGTGGGTGGGGGTGTGGTTGGG-GTGGGGTT
121 GGGG-GGGTGG-GGGGGTGGG-G-GTGGTGG-GGGTGGGGG-GTGGGTGGGTGT-GGG-T
* * * *
196727 GTGGGGGGTGGGTGTGGGTGGGGGGTGG-G-GGTGTGG-GT-GGGGTGGTGTTGG-GTGGGGGTT
1 GTGGGGGG-GGGTGTGGG-GGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTG-GGGTGTGGGGGTG
* *
196787 G-GGTGGTGGGTGGTGGT-GGGGTGGGGGGT-GGTGT--TGGGGGTGGGTGTGGGTGGTGGGGGG
63 GTGGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGT-GTGGGGGG
* * * * *
196847 GTGGGTGGTGTTGGGTGGGTGGT-GGTGTTGGGGGTGGGTTGGTG-GTGT
127 GTGGG-GG-GGT-GG-GGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * *
196895 GGGGGGGGGGGTGGGGGGGTTGTGGTGGGTGGGGTGGGGTGGTGGGGGTGG-GTGGGTGTGGGGG
1 GTGGGGGGGGGTGTGGGGG-TG-GGT-GGTGTGGTGGGGT-GTGGGGGTGGTG-GGGTGTGGGGG
* *
196959 TGGGTGG-GGTGGGGT-GTGGTTGGGGGTGGGGTGG-GGGTGGGGTGGGGGGTGGTGGGGGGGTG
61 T-GGTGGTGG-GGGGTGGTGG-TGGGGGTGGGG-GGTGGGTGTGGT-GGGGGTGG-GGGTGGGTG
* * * * * *
197021 TTGGGGTGGGGTGTGGGGTTGTGGGTGGGTGGGGGT-GGTGTTGGGTGGGGGT-GGT
120 -T-GGG-GGGGTGGGGGGGTGGGGGT-GGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
197076 G-GGGTGGGGTGGT-TGGGGGT-GG-GGTGT-GT-GGGTGTGGGGGGTGG-GGGG-GTGGGGGT-
1 GTGGG-GGGG-GGTGTGGGGGTGGGTGGTGTGGTGGGGTGT-GGGGGTGGTGGGGTGTGGGGGTG
* *
197132 GTGG-GGTGGGTTGG-GGTGGGGTGGGGGGGGGTGGGTGTTGGGTGGGGGTGGGGGTGTGGGTGG
63 GTGGTGG-GGGGTGGTGGT-GGG-GGTGGGGGGTGGGTG-T-GGTGGGGGT-GGGG-GTGGGT-G
197195 TTGGGGGGGTGGGGTGTGGGGTGGTGGGT-GTGGGGG-GGGGGTTGTTGGGTGGG-GTGGGT
120 -TGGGGGGGT--GG-G-GGGGTGG-GGGTGGTGGGGGTGGGGG--G-TGGGTGGGTGTGGGT
* * * *
197254 -TGGGGTGGGGGTGTGGGTGG-GGGTTGTGGGTGGTGGGGGGTGGGTGGGGGGGTGGGT-TGGGG
1 GTGGGG-GGGGGTGTGGG-GGTGGG-TG-GTGTGGTGGGGTGTGGG-GGTGGTG-GGGTGTGGGG
* * * *
197316 GTGTTGGGTGTGGGGGTGG-GGTGGGGGT-TGTGG-GGGTGT-G-GGGGGTGGGTG-GGGTGTGG
60 GTGGT-GGTG-GGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGG
* * * *
197375 GGTTGG-GGGGTGGTGGGGG-GGTGGGTGGTGGGGTG-GGGT-GGTGTGGGG
123 GG-GGGTGGGGGGGTGGGGGTGGTGGG-GGTGGGGGGTGGGTGGGTGTGGGT
* * *
197423 GTGGGGGGGGG-GT-GGGGTGGGT-GTGGGGGGGGGTGGGGGGGTGGT-GGG-GTGGGGGT-GTG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGT-
* * *
197482 GGTGGGGTGGGGGTGG-GGGGGT-GTGGG-GGGTGTGGTGGGGGT-GGGGTGGG-GT-GGGGTGT
65 GGTGGGG-GGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGT
*
197541 GGGGGGGTGTGGTGGGGGT-GGGGTGTGGGGG-GGGTGGGTG-GGG-
129 GGGGGGGTG-GG-GGTGGTGGGGGTG-GGGGGTGGGTGGGTGTGGGT
* **
197584 GTGGGGGGGGGTGTGGGTGG-GGGGGGT-TGGGTGGGGGTGTGGGGGGGTGGGTGGGTGGTGTTT
1 GTGGGGGGGGGTGTGGG-GGTGGGTGGTGT-GGT-GGGGTGT--GGGGGT-GGT-GG-GGTGTGG
* *
197647 GGGTGGGGGTGGGGGGTGGT-GTGGGGGTGGGGGGT--GT-TGGGGGTGGGTGGGGGTGGG-GTG
58 GGGTGGTGGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGG-GGGTGGGGGTGGGTGTG
*
197707 GGGGGGTGGGTGTTGTGG-GGGGGTGGGTGTGGGG-GTGGGGGTGGGTTGGG-GGGGGT
122 GGGGGGTGGG-G--G-GGTGGGGGT-GGTG-GGGGTG-GGGGGTGGG-TGGGTGTGGGT
*
197763 GTGGTGGGGGGG-GTGGGGGTGGGT-GTGTGGTGGGGGTGTGGGGG-GGT--GGTG-GTGGGTGG
1 GTGG-GGGGGGGTGTGGGGGTGGGTGGTGTGGT-GGGGTGTGGGGGTGGTGGGGTGTGGGGGTGG
*
197822 GGGT-GGGGGTGGGTGGTGGGGGTGGGGGGGTGGG-GT-GTGGGGG-GGGGTGTGGG-G-GGGTG
64 TGGTGGGGGGT-GGTGGTGGGGGT-GGGGGGTGGGTGTGGTGGGGGTGGGG-GTGGGTGTGGG-G
* * *
197881 GGGTGGTGGGGTGGGGG-GGGGGGGGTGGGGTGGTGGG-GGGGGTGGG-
125 GGGTGGGGGGGTGGGGGTGGTGGGGGTGGGG-GGTGGGTGGGTGTGGGT
* * * * * * *
197927 GTGGGGTGGTGTGGGGGGGTGGTTGGTG-GGTGGGGGGGGTGGGGTGG-GGGGTG-GGGGGTGGG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTG-GGGGTGGTGGGGTGTGGGGGTGGT
197989 GGTGGGGGG-GG-GG-GGGGTGTGGGTGGG-GGGT-TGGTGTGGGGT--GGG-GGGTG-GGGGGG
65 GGTGGGGGGTGGTGGTGGGG-GTGGG-GGGTGGGTGTGGTG-GGGGTGGGGGTGGGTGTGGGGGG
* *
198045 GTTGGGGGGTGGGGTGTGGTGGGGTGGGGGGGGTGGG-GGGTG-GGGT
127 GTGGGGGGGTGGGG-GTGGTGGGG-GTGGGGGGTGGGTGGGTGTGGGT
* * * * *
198091 GTTGGGTGGTGG-G-GGGGGTGGGT-GTG-GG-GGGGTGTGGGTTGTGGTGGGGGGTGTGTGG-G
1 G-TGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGG-GGTGGTGGGGTGTG-GGGGTG
* * * *
198150 GTGGGGGGGGGT-GTGGTGGGGGT-GTGGG-GGG-GTGGTGGGGGT-GGTGTGGGGGTGGGGGGG
63 GTGGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGG
* *
198210 -GGGTGGGG-GGTGG-GGTGGGGGT-GGGGGTGGGGTGGGTGGGGGT
128 TGGG-GGGGTGGGGGTGGTGGGGGTGGGGGGT-GGGTGGGTGTGGGT
*
198253 GTTGGGGTGGGGG-GTGGGGTGGTGGG-GGTG-GG-GGGGT-T-GGGG-GG-GGGGTGGTGGGTG
1 G-TGGGG-GGGGGTGT-GGG-GGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGT-GTGGGGG
* *
198310 TGGTGGTGGGGGTGTGTGGGTGGGTGTGGGG-GGGGGGTGGGGGTGTGTGGGGG-GGGGGTTGGT
61 TGGTGGT-GGGG-G-GT-GGT-GGTG-GGGGTGGGGGGTGGGTGTG-GTGGGGGTGGGGGTGGGT
* * * *
198373 G-GGGGGTGGTGGGTGTGGG-GTGGGGGGT-GGGGTGGGGGGTGGGGGGGTGGGGGT
119 GTGGGGG-GGTGGG-G-GGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* *
198427 G-GGTGGGGGGGGGT-GGGGTGGGTGGGGTTGGGTGGGG-GTGTGGGGTGGTGGTGGTGGGTGGG
1 GTGG-GGGGGGGTGTGGGGGTGGGTGGTG-T-GGTGGGGTGTG-GGGGTGGTGG-GGT--GTGGG
* * *
198489 GGTGGGGGGTGGTTGGGGGGGGTGTGGGGGGGGTGGGGGGTTGGGGGTGGTGGGGTGTGGGGGTG
59 GGT----GGTGG-TGGGGGGTG-GTGGTGGGGGTGGGGGG-TGGGTGTGGTGGGG-GTGGGGGTG
* *
198554 GG-GTGGGTGGG-GGGGGTGTGGGGGTGTGGTGGGGGTGTGGTGGG-GGG-GGGTGTGTTGG-
116 GGTGTGGGGGGGTGGGGGGGT-GGGG-GTGGTGGGGGTG-GG-GGGTGGGTGGGTGTG--GGT
** * *
198612 GTGGTGGGGGGG-GT-GTTGTGGGTGGTG-GGGGGGGTG-GGGGGTTGGTGGGG-GGGGTGGGTT
1 GTGG-GGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGG-TGGTGGGGTGTGG-GGG-T
* *
198672 GGTGG-GGGGGG-GGGGGTGGGGGTGGGTGGG-GGG-GTTGTGTGGGGT---GGTGGGTG-GGTG
62 GGTGGTGGGGGGTGGTGGTGGGGGTGGG-GGGTGGGTGTGGTG-GGGGTGGGGGTGGGTGTGG-G
* * *
198729 GGGGTGGGGGGG-GGGGGT-GTGGGGGTTGGGGGGGTGGGTGTTGTGGGGGGG
124 GGGGTGGGGGGGTGGGGGTGGTGGGGG-T-GGGGGGTGGGTG-GGT-GTGGGT
* * * *
198780 GTGGGGGGGGTGGGTGGGGGTGGG-GGTGGTTGGTGGGGGGTGGTGGTGGGGGGGGTGGGTGGTG
1 GTGGGGGGGG-GTGTGGGGGTGGGTGGT-G-TGGTGGGGTGTGGGGGT-GGTGGGGT--GTGG-G
* *
198844 GGTGGTGTGTGGGGGGGGGGTGG-GGGGTGTGGGGGGTGGGTGTGGGGGGGGGTGGGGGGTGGGT
59 GGTGGTG-GT-GGGGGGTGGTGGTGGGG-GTGGGGGGTGGGTGT-GGTGGGGGT-GGGGGTGGGT
* * *
198908 GGGGGGGGGTGGTGGGGGTGGGGGTGG-GGGGG-GGTGGGTGGGGTGGG-GGGGGT
119 GTGGGGGGGTGG-GGGGGTGGGGGTGGTGGGGGTGGGGGGT-GGGTGGGTGTGGGT
* * * * *
198961 GTGGGTGGGTGTGGGGTGGGGGGGTGG-GTGGT-GGG-G-GGGGGTGGTGGGG-G-GGGGGGGGT
1 GTGGGGGGGGGTGTGG-GGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGT
* *
199020 GG-GGGTGGGGGGTGGTGGGTGTGGGGGG-GGGTG-GGTGGGGGGTGTGGGG-GGG-GT-GGGGG
65 GGTGGG-GGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGT-GGGGGTG-GGGGTGGGTGTGGGGGG
* * * * * *
199079 GTTGGGTGGTGGGTGTGGGTGGGGTTGGTGGGTGGTGTGGG-GGGGGT
127 GTGGGGGGGTGGGGGT-GGTGGGGGTGGGGGGTGG-GTGGGTGTGGGT
* *
199126 GGGG-GTGGGGTG-GGGGGTGGGGTGGTG-GGTGGGG-GTGGTGGG-GGTGGGGTGTGGTGGG-G
1 GTGGGGGGGGGTGTGGGGGT-GGGTGGTGTGGTGGGGTGTGG-GGGTGGTGGGGTGTGG-GGGTG
* * * * * *
199185 GGGGTGGTGGGTGGTGG-GTGGGG-GGGGGTTGGG-GTGGTGGGGGTGTGGGTTGGTGGGGGGTT
63 GTGGTGGGGGGTGGTGGTG-GGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGT-GTGGG--
*
199247 GGGGTGGGTGGG-GGGGGTGGGTGTGGGGTTGGGTGGGTGGG-GTGGTGGTTGGGT
124 GGGGTGGGGGGGTGGGGGT-GGTG-GGGG-TGGG-GGGTGGGTG-GGT-G-TGGGT
199301 G-GGGGGGGGGTG-GGGGGT-GGTGGTG-GG-GGGTGTGTGGGGGGTGGGGGTGGGGTGTGTGGG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGG-GTGT-GGGGGT---GGTGGGGTGTG-GGG
*
199361 G-GGT-GTGGGGGGGTGGGTGGGTTGGGG-GGGGGGTGGG-GT-GT-GGGGTGGGGG-GGGTGTG
60 GTGGTGGT-GGGGGGT-GGT-GGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTG
* * * *
199419 TGGGGG-GGGGTGGTGGGGGTGG-GGGGGTGGGGGG-GGGT-GTTGTGGGG
122 GGGGGGTGGGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * * * * * * * *
199466 GGGGGGGGTGTGGGGTGGGGG-GGGGGGTGTTGTGGGGGGGGGGGGGGGGGGGGTGGGGGGGGTG
1 GTGGGGGG-G-GGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGT-GTGGGGGTG
* * * * * *
199530 GGGGTGTGGGG-GGTGGGGGGGGTGGGGGGTGGTGTGGGGGGTGGGGGGGGGGGGGGGT-TGGGG
63 GTGGTGGGGGGTGGTGGTGGGGGTGGGGGGTGG-GT--GTGGTGGGGGTGGGGGTGGGTGTGGGG
* * *
199593 GGG-GGGTGGGG-GGTGTGTGGTGGGGGTGGGGGGTGTTGGGGGGGGTGGGT
125 GGGTGGG-GGGGTGG-GGGTGGTGGGGGTGGGGGGTG--GGTGGGTGTGGGT
* * * * * * *
199643 G-GGGGGTGGGGTGGGGGGGGGGGGGGTGGGGTGGGG-GTGGGGGGGGGGGGGTGGGTGTGGGGG
1 GTGGGGG-GGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGT--GTG-GGGGT
* * * *
199706 GGGGGTGGGTGG-GGTGGTGGGGGGTGGGGGTGTGGGGGTGGGGGGGGGTGGGGG-GGGTG-GGG
62 GGTGGTGGGGGGTGGTGGT-GGGGGTGGGGG-GTGGGTGT-GGTGGGGGTGGGGGTGGGTGTGGG
* * * *
199768 GGGTTGGGGGGG-GGGGGGGGTGGTGGGGTGGTGGGTGGGGTGGGTG-GGGG
124 GGGGTGGGGGGGTGGGGGTGGT-G-GGGGTGGGGGGT-GGGTGGGTGTGGGT
* * *
199818 GTGGGGGGGGG-GTGGGGG-GGGTGGT-TGGGTGGGG-GTGGGGGTGGGGTGGGTGGGGGGGGGG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGT-GGTGGGGTGTGGGGGTGGTG-GGGTGTGGGGGTGG
* * * * * *
199879 GGGGGGGGTGGGGGTGGTGGGGGGTGGGGGGTGGG-GGGGTGGGGGGTGGGGGGGGGGGGTGGGG
64 TGGTGGGG-GGTGGTGGT-GGGGGTGGGGGGTGGGTGTGGT-GGGGGT-GGGGGTGGGTGT-GGG
* * * * * *
199943 GGGGTGGGGGGGGGGTGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGT
124 GGGGTGGGGGGGTGG-GGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * * * *
199993 GGTGGGGGGGGGGGGGGGGGTGGGGGGGGGGGT-GGGTG-GGGGG-GG-GGGG-G-GGTGGG-GG
1 -GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGG-GGGTGG
* * * * * * * *
200051 -GGTGGGGGGTGGGGGTGGGGG-GGGGGG-GGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
64 TGGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGT
* * * *
200112 GGGGGGGGGGGGGGGGGGGGGGTGGGGGG-GGGTGGG-GGGTGGT
129 GGGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTG-GGT
* * * * * * * *
200155 GGGGGGGGGGGGGGGGGGGTGGG-GG-G-GGGGGGGGGGGGGGGTGGGGGGGGGGTGGGGG-GGT
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGT-GGTGGGGTGTGGGGGTGGT
* * * *
200216 GGTGGGGGG-GGGGGGGGGGGTGGGGGG-GGG-G-GG-GGGGG-GGGGGGGGGTG-GGGGGGGGG
65 GGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTG
* * * *
200274 GGGGGGGGGGGGGGGGGGGTGGTGTGGGGG-GGGTGGG-GTGGGG
130 GGGGGGTGGGGGTGGTGGG-GGTG-GGGGGTGGGTGGGTGTGGGT
* * * * *
200317 GT-GGGGGGGG-G-GGGGGTGGG-GGGGGGGTGGGGTG-GGGGGGGGTGGGG-G-GGGGGGGGGG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGTG
* * * * * *
200375 GTGGTGGGTGGGGGGGGGGGTGGGGGG-GGGTG-GG-GGGGGGGGTGGGGGGGTGGGGGGGGGTG
66 GTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGG-GGGTGGGTGTGGGGGGGTG
*
200437 GGGGGG-GGGGG-GG-GGGGG-GGGGGG-GGG-GGG-G-GGGG
130 GGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * * * * * * * *
200472 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTGGGGGT-GTGGGGGGTGGGGG-GG-G
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGTG
* * * * * *
200534 GTGTGGGGG-GG-GG-GGGGG-GGGGGGGGGGT-TGG-GGGGGGGGGGGGGGGGGGGGGGGGGGG
66 GTG-GGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTG
200593 GGGGGGT-GGGG-GG-GGGGGTGGGGGG-GGG-GGGTGGTGGG-
130 GGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGT-GTGGGT
* * * * * * * *
200631 G-GGGGGGGGGTGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGTGGGGTG-GGGGG-GG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGT--GTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGG
* * * *
200693 -GGGGGGGGGTGG-GGTGGGGG-GGGGGG-GGG-G-GG-GGGGG-GGGGG-GGGGGGGGGGGGGG
64 TGGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGT
* * * * * * * *
200749 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG
129 GGGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * * * * * * * * * * * * *
200793 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGT
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGT-GGT
*
200858 GGTGGGGGG-GG-GG-GGGGG-GGGGGG-GGG-G-GG-GGGGG-GGGGG-GGG-G-GGGGGGGGG
65 GGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTG
* * * * *
200911 GGGGGGTGGGGGGGGGTGGGGG-GGGGGG-GGGGGGGGGGGGGG
130 GGGGGGT-GGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * * * * * * * * * * *
200953 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG-GG-GGGGGGGGGGGGGGGTG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGTG
* * * * * *
201016 GGGGGGGGGGGGGGGGGGGGT-GGGGGTGGG-GTGG-GGGGG-GGGGGGGGGGGTGGGGGGG-GG
66 GTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTGG
201076 GGGGG-GGGGG-GG-GGGGG-GGGGGG-GGG-GGG-G-GGG-
131 GGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* * * * * * * * * * * * *
201109 G-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG-GGGGGGGGGG
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGTG
* * * * * * * *
201172 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTG-GGGGGGGGTGGGGG-GGG-G-GGGGGGGAAG
66 GTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGG-TG
* * * * * * *
201233 GGGGGG-GGGGGGGGAAGGGGG-GGGGGGGGGGGGGGGGGGGGG
130 GGGGGGTGGGGGTGG-TGGGGGTGGGGGGTGGGTGGGTGTGGGT
* ***
201275 GGGAGGGGGGGGAAAGGGGG-GGG-GG-G-GG-GGGG-G-GGGGG-GG-GGGG-G-GGGGG-GG-
1 GTG-GGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGT
* * * * * * * * * * * *
201327 GG-GGGGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
65 GGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTG
* * * * *
201390 GGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTGTGAGG-G-GGG-
130 GGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTG-GGTGTGGGT
* * * * * * * * * * * * * *
201431 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTGGGGGGGGTA
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGT-
* * *
201496 GG-GGGGGG-GGAGG-GGGGG-GGGGGG-GGG-GGGGGGGGGGTGGGGG-GGG-G-GGGGGGG-G
65 GGTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTG
201551 GGGGGG-GGGGG-GG-GGGGG-GGGGGG-GGG-GGG-G-GGG-
130 GGGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
* *
201585 G-GGGGGGGGG-GGGGGGGAGGG-GG-G-GG-GGGG-G-GGGGG-GG-GGGG-G-GGGGG-GG-G
1 GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGTG
* * * * * * * *
201636 G-GGGGGG-GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT-TGGGGGGG-GG
66 GTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTGG
* *
201696 GGGGGTGGGGGGGGGGGGGGTAGGGGGG
131 GGGGGTGGGGGTGGTGGGGGT-GGGGGG
201724 GGGGGGGGGG
Statistics
Matches: 4301, Mismatches: 364, Indels: 1063
0.75 0.06 0.19
Matches are distributed among these distances:
138 2 0.00
139 15 0.00
140 6 0.00
141 5 0.00
142 20 0.00
143 3 0.00
144 18 0.00
145 7 0.00
146 7 0.00
147 6 0.00
148 4 0.00
149 8 0.00
150 1 0.00
151 2 0.00
152 10 0.00
153 9 0.00
154 30 0.01
155 79 0.02
156 104 0.02
157 122 0.03
158 129 0.03
159 120 0.03
160 216 0.05
161 246 0.06
162 199 0.05
163 231 0.05
164 175 0.04
165 181 0.04
166 119 0.03
167 113 0.03
168 101 0.02
169 97 0.02
170 120 0.03
171 177 0.04
172 153 0.04
173 159 0.04
174 117 0.03
175 135 0.03
176 127 0.03
177 132 0.03
178 186 0.04
179 93 0.02
180 63 0.01
181 101 0.02
182 88 0.02
183 52 0.01
184 86 0.02
185 50 0.01
186 55 0.01
187 6 0.00
188 5 0.00
189 10 0.00
190 1 0.00
ACGTcount: A:0.00, C:0.00, G:0.83, T:0.16
Consensus pattern (172 bp):
GTGGGGGGGGGTGTGGGGGTGGGTGGTGTGGTGGGGTGTGGGGGTGGTGGGGTGTGGGGGTGGTG
GTGGGGGGTGGTGGTGGGGGTGGGGGGTGGGTGTGGTGGGGGTGGGGGTGGGTGTGGGGGGGTGG
GGGGGTGGGGGTGGTGGGGGTGGGGGGTGGGTGGGTGTGGGT
Left flanking sequence: Indices 195864 -- 196363
GGGGGGATTGGGGATGGCAGGTGGGGGTGGGTGGGGGGGGTGTTGGGTGTGAGGTTGGTGTACTA
TGGTGGGTGTTGAAAAGAGGAGAATGGGTGGATGAGTTTTTGTGTAGTGGGGGGTGGGGACATAG
AGCCACACATTCACAAAGCGGATAGGGGGGGGTAGGTAGCGATCAACAAGTAGGAGGGTAGGCAT
ACAGGGGGAAAGTGATGATACTGAGTACAAGTTGGGAAGGTGTTGAGTGGTGAGTGTGGTAGGGA
GGAGGGAGTGATGTAGTGGGGGTGTTGGTGATCTGGGATGTGGGAGGGGTTGGTTGGGGGGTGGG
TGTGGTATATGTCAGTGTGGGGTGGTATGTCTCTAGGTAGAGGAATTAGATGTTTTGGGTGTTTG
TGGTTGGGGGTAGAGTATGTTTGGGGGGGGGGGGGGGATGAGGGTGTGATGGAGAGTGAGAGTGT
GGGTAGTGTGAGGGTGTGGGAGGTAGTGGGAGGGGGAGGGGCGGG
Right flanking sequence: Indices 201724 -- 202223
GGGGGGGGGGTTTTTTGGGGGGGGGTTTGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGAGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGAGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGGGGGGGGG
GGGGGGGGGGGGGGGGGGGAATAGGGGGCGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGG
Found at i:196927 original size:244 final size:234
Alignment explanation
Indices: 196361--202579 Score: 2590
Period size: 224 Copynumber: 28.0 Consensus size: 234
196351 GGGGAGGGGC
* * * * *
196361 GGGGTGGG-G-GGGTGGTGTGGAGGTGGTGGGTGTGTGGGGGGGGGGTGGTGGT-GGGGTGTGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGG-GGGTG-GTGGGTGGGTGGTGGTGGTGGGGGTGGGGG
* * * * * *
196423 GGTGGTG-GTGGGGGGTGGTGGTGGGGGTTGGTGGG-GTGGGT-TGT-GGTGGGGGTGGGGGTG-
64 GGTGGTGTGGGGGGGGGGGTGG-GGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGT
* * *
196483 GGTGTGGGT-GGGTTG-GGGGGGTGGG-GTTGGTGGGGGTTGGGGG-GTGGGTGGGTGTGGGTGT
128 GGTG-GGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGG-GT-GGTGT
* * *
196544 GGG-GGGGG-GTGTGG-GGGTTGGGTGGTGTGGTGGGGTGTGGG--G
190 GGGTGGGGGTGGGTGGTGGG-TGGG-GGTGGGGTGGGGGGTGGGTTG
* * * * * * *
196586 GTGGTGGG-GTGTGTGGTGTGGGGGGT-GGGGTGGTGGGTGGGGGTGTGGGGGTGGGTGTTGGTG
1 GGGGTGGGTGTGGGTGGTG-GGGGGGTGGGGGTGGTGGGTGGGTG-GTGGTGGTGGGGGTGGGGG
* * *
196649 GGTGG-G-GGGGGTGGGGTTGGTGGGGT-GG-GGGTGGGGGTGGGTGTGTGGGGTGGGTGGGGGT
64 GGTGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTG-G-GGGG-GGGTGGGGGT
*
196710 GTGGTTGGGGTGGGGTTGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGT
126 GTGG-TGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTG-
*
196775 TGGGTGGGGGTTGGGTGGTGGGTGGTGGTGGGGTGGGGGGTGGTGTTG
189 TGGGTGGGGG-TGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGG-GTTG
* * **
196823 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGTGGTGTTGGGTGGGTGGTGGTGTTGGGGGTGGGTTG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGG-GGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGG
* * *
196888 GTGGTGTGGGGGGGGGGGTGGGGGGGT-TGT-GGT--GGGTGGG-GTGGGGTGGTGGGGGTG-GG
65 GTGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGG
* * *
196947 TGGGTGTGGGGGTGG-GTGGGGTGGG-GTGTGGTTGGGGGT-GGGGTGGGGGTGGGGTGG-G-GG
130 TGGG-GT-GGGGTGGTGGGGGGTGGGTGTG-GGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGG
* * * *
197007 GTGGTGGGGGGGTGTTGGGGTGGGGTGTGGGGTTGTGGGTGGG-TG
192 GTGG-GGGTGGGTGGT-GGGTGGGG-GTGGGGTGGGGGGTGGGTTG
* * *
197052 GGGGT-GGTGTTGGGTGG-GGGTGGTGGGGTGGGGTGGTTGG-GGGTGG-GGTGTGTGGGTGTGG
1 GGGGTGGGTG-TGGGTGGTGGG-GG-GGTG-GGGGTGGTGGGTGGGTGGTGGTG-GTGGGGGT-G
* * * *
197113 GGGGTGGGGGGGTGGGGGTGTGGGGTGGGTTGGGGTGGGGTGGGGGGGGGTGGGTGTTGGGTGGG
60 GGGG-GGTGGTGTGGGGG-GGGGGGTGGG--GGGGT-GGGTGGGTGGGGGTGGGTG--GGG-GGG
* * *
197178 GGTGGGGGTGTGG-GTGGTTGGGGGGGTGGGGTGTGGGGTGGTGGGTGTGGGGG-GGGGGTTGTT
117 GGTGGGGGTGTGGTG-GGGTGGGGTGGTGGGGGGT-GGGT-GTGGGTG-GGGGGTGGGGG-TG-T
* *
197241 GGGTGGGGTGG-GTTGGGGTGGGGGTGTGGGTGG-GGGTTGTGGGT--GGTGGGGGGTGGGTGGG
176 GGGTGGGGTGGTG-T-GGGT-GGGG-GTGGGTGGTGGG-TGGGGGTGGGGTGGGGGGTGGGT-TG
* * *
197302 GGGGTGGGT-TGGG-GGTGTTGGGTGTGGGGGTGGGGTGGG-GGTTGTGGGGGT-GTGGGGGGTG
1 GGGGTGGGTGTGGGTGGTG-GGGGGGTGGGGGT--GGTGGGTGG--GTGGTGGTGGT-GGGGGTG
*
197363 GGTGGGGT-GTG-GGGTTGGGGGGTGGTGGGGGGGTGGGT-GGT-GGGGTGGGGTGGTGTGGGGG
60 GG-GGGGTGGTGTGGG--GGGGGG-GGTGGGGGGGTGGGTGGGTGGGGGT-GGGTGG-GGGGGGG
* * *
197424 TGGGGGGGGGGTGGGGTGGGTGTGGGGGGGGGTGGG-G-GGGTGGTGGGGTGGGGGTGTGGGTGG
119 TGGGGGTGTGGTGGGGTGGG-GTGGTGGGGGGTGGGTGTGGGTGG-GGGGTGGGGGTGTGGGTGG
* * *
197487 GGTGGGGGTGGG-GGGGTGTGGGGGGTGTGGTGGGGGTGGGGTGGGGTG-GGGTGTG
182 GGT-GGTGTGGGTGGGG-GTGGGTGGTG-GGTGGGGGTGGGGTGGGGGGTGGGT-TG
* *
197542 GGGG-GGTGTGGTGGG-GGT-GGGGTGTGGGGGGGGTGGGTGGG-GGTGG-GG-GGGGGTGTGGG
1 GGGGTGG-GT-GTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTG-GGG
* * * * ** *
197601 TGGGGGGGGTTGGGTGGGGGTGTGGGGGGGTGGGTGGGTGGTGTTTGGGTGGGGGTGGGG-GGTG
63 -GGGTGGTG-TGGGGGGGGGGGTGGGGGGGTGGGTGGGTGG-GGGTGGGTGGGGG-GGGGTGGGG
* *
197665 GTGT-G-GGGGTGGGG-GGTGTTGGGGGTGGGTGGGGGTGGGGTGG-GGGGGTGGGTGTTGTGGG
124 GTGTGGTGGGGTGGGGTGGTG--GGGGGTGGGTGTGGGTGGGG-GGTGGGGGT--GTG-GGTGGG
* *
197726 GGGGTG-GGTGTGGGGGTGGG-GGTGGGTTGGGGG-GGGTGTGGTGGGG-GGGGTG
183 GTGGTGTGG-GTGGGGGTGGGTGGTGGG-TGGGGGTGGG-GTGG-GGGGTGGGTTG
*
197778 GGGGTGGGTGTGTGGTGG-GGGTGTGGGGGGGTGGTGGTGGGTGGGGGTGGGGGTGGGTGGTGGG
1 GGGGTGGGTGTG-GGTGGTGGG-G-GGGTGGG-GGTGGTGGGT--GGGT---GGT-GGTGGTGGG
*
197842 GGTGGGGGGGTGGGGTGTGGGGGGGGGTGTGGGGGGGTGGG-GTGGT-GGGGTGGG-GGGGGGGG
56 GGTGGGGGGGT--GGTGTGGGGGGGGGGGTGGGGGGGTGGGTG-GGTGGGGGTGGGTGGGGGGGG
*
197904 G-GTGGG-GTGGTGGGG-GGGGTGG-GGTGGGGT-GGTGTGGG-GGGGTGGTTGGTGGGTG-GGG
118 GTGGGGGTGTGGTGGGGTGGGGTGGTGG-GGGGTGGGTGTGGGTGGGG-GG-TGG-GGGTGTGGG
* * *
197962 -GGGGTGGGGTGGG-GGGTGGGGGGTGG-GGGTGGGGG-GGGG-GGGGGTGTGGGTGG
179 TGGGGTGGTGTGGGTGGG-GGTGGGTGGTGGGTGGGGGTGGGGTGGGGG-GTGGGTTG
* * *
198015 GGGGTTGGTGT-GG-GGT-GGGGGGTGGGGGGGGTTGGG-GGGTGG-GGT-GTGGTGGG-GTGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGG-TGGGTGGGTGGTGGTGGTGG-GGGTGGGGG
* ** * *
198073 GG-GG-GTGGGGGGTGGGGT-GTTGGGT-GGTGGG-GGGGGTGGGTGTGGGGGGGTGTGGGT-T-
64 GGTGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTG
* *
198131 GTGGTGG-GGGGT-GTGTGGGGTGGG-G-GGG-GGTGTGGTGGGGGTGTGGG-GGGGT-G-GTGG
129 GTGG-GGTGGGGTGGTGGGGGGTGGGTGTGGGTGG-GGGGTGGGGGTGTGGGTGGGGTGGTGTGG
* * *
198188 G-GGTGGT--GTGG-GGGTGGGGGGGGGGTGGGGGGTGGGGTG
192 GTGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * **
198227 GGGGTGGGGGTGGGGTGG-GTGGGGGTGTTGG-GGTGGG-GGGTGG-GGTGGTGGGGGTGGGGGG
1 GGGGTGGGTGT-GGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGG
* *
198288 GT--TG-GGGGGGGGGTGGTGGGTGTGGTGGTGGGGGTGTGTGGGTGGGTGTGGGGGGGGGGTGG
65 GTGGTGTGGGGGGGGG-GGTGGG-GGGGTGG-GTGGGTG-G-GGGT-GG-GT-GGGGGGGGGTGG
* *
198350 GGGTGT-GTGGGG-GGGG-GGTTGGTGGG-GGGTGGTGGGTGTGGGGTGGGGG-GTGGG-GTGGG
122 GGGTGTGGTGGGGTGGGGTGG-TGGGGGGTGGGT-GTGGGTGGGGGGTGGGGGTGTGGGTG-GGG
198409 -GG-GT-GG-GGGGGTGGG-GGTGGGTGGGGG-GGGGTGGGGTGGGTGGGGTTG
184 TGGTGTGGGTGGGGGTGGGTGGTGGGTGGGGGTGGGGT-GGG-GGGT-GGGTTG
* * * *
198457 GGTGG-GGGTGTGGGGTGGTGGTGGTGGGTGGGGGTGGGGGGTGGTTGGGGGGGGTGTGGGG-GG
1 GG-GGTGGGTGT-GGGTGGTGG-GG-GGGTGGGGGTGGTGGGTGGGTGGTGGTGGTG-GGGGTGG
* *
198520 GGTGGGGGGT-TGGGGGTGGTGGGGTGTGGGGGTGGGGTGGGTGGGGG-GGGTGTGGGGGTGTGG
61 GG-GGGTGGTGTGGGGG-GG-GGGGTGGGGGGGT-GGGTGGGTGGGGGTGGGTG-GGGGG-G-GG
* * * * *
198583 TGGGGGTGTGGTGGGGGGGGGTGTGTTGGGTGGTGGG-GGGGGTGTTGTGGGTGGTGGG-GGGGG
119 TGGGGGTGTGGTGGGGTGGGGTG-G-TGGGGGGTGGGTGTGGGTG--GGGGGTGG-GGGTGTGGG
*
198646 TGGGG-GGTTGGTGGG-GGGGGTGGGTTGGTGGG-GGGGGGGGGGT-GGGGGTGGG-TG
179 TGGGGTGG-T-GTGGGTGGGGGTGGG-TGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
*
198700 GGGG-GGTTGTGTGGGGTGGTGGGTGGGTGGGGGTGG-GGG-GGG-GG-GGT-GTGGGGGTTGGG
1 GGGGTGG--GTGT-GGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGG-TGGG
* * * * *
198759 GGGGTGGGTGTTGTGGGGGGGGTGGGGGGGGTGGGTGGGGGTGGGGGTGGTTGGTGGGGGGTGGT
62 GGGGT-GGTGTGGGGGGGGGGGT-GGGGGGGTGGGT--GGGTGGGGGTGGGTGGGGGGGGGTGGG
* * *
198824 GGTG-GGGGGGGT-GGGTGGTGGGTGGT--GTGTGGGGGGGGGGTGGGGG-GTGTGG-GGGGTGG
123 GGTGTGGTGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTG-GGTGGGGT-G
* * *
198883 GTGTGGGGGGGGGTGGGGGGTGGGTGGGGG-GGGGT-GGTGG-GGG-TG
186 GTGTGGGTGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * *
198928 GGGGTGGGGGGGGGTGGGTGGGGTGGG-GGGGGT-GTGGGTGGGT-GTGG-GGT-GGGG-GGGTG
1 GGGGTGGGTGTGGGT-GGTGGGG-GGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGG
*
198987 GGTGGTG-GGGGGGGGTGGTGGGGGGG-GGG-GGGTGGGGGTGGG-GGGTGGTGGGTGTGGGGG-
64 GGTGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGG-GG-GGG-GTGGGGGT
* *
199047 GGGGT-GGGTGGGG-GGTGTGGGGG-GGGTG-GGG-GGTTGGGTGGTGGGTGTGGGTGGGGTTGG
126 GTGGTGGGGTGGGGTGGTG-GGGGGTGGGTGTGGGTGG-GGGGTGG-GGGTGTGGGTGGGG-TGG
*
199107 TGGGTGGTGTGGGGG-GGGTGG-GGGTGGGGTGGGGGGTGGGGTGGTGGG-TG
187 T--GTGG-GTGGGGGTGGGTGGTGGGTGGGG-GTGGGGTGGGG-GGTGGGTTG
* * * * *
199157 GGGGT-GGTGGGGGTGG-GGTGTGGTGGGGGGGGT-GGTGGGTGGTGGGTGG-GGGGG-GGTTGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGT-GGTGGTGGGGGTGG-GGG
* * * *
199217 GGTGGTG-GGGGTGTGGGTTGGTGGGGGGTTGGGGTGGGTGGGGG-GGGTGGGTGTGGGGT-TGG
64 GGTGGTGTGGGG-G-GGG-GGGTGGGGGGGT-GGGTGGGTGGGGGTGGGTGGG-GGGGGGTGGGG
*
199279 GTG-GGTGGGGT--GGTGGTTGGGTGGG-GGG-G-GGGTGGGGGGTGGTGGTG-GGG-GGTGTGT
124 GTGTGGTGGGGTGGGGTGG-TGGG-GGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGG-G-GT
*
199336 GG-G-GGGTGGGGGTGGGGTGTGTGGG-GGGTGTGGGG-GGGTGGGTGGGTTG
185 GGTGTGGGTGGGGGT-GGGTG-GTGGGTGGGGGTGGGGTGGG-GGGTGGGTTG
* * * * * *
199385 GGGG-GGGGGT-GG-GGT-GTGGGGTGGGGGGGGTGTGTGGGGGGGGGTGGTGGGGGTGGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* ** * *
199446 TGG-G-GGGGGGTGTTGT-GGGGGG-GGG-GGGTGTGGGGTGGGGGGGGGGGTGTTGTGGGGGGG
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTG-GGGGTGGGTGGGGGGG-G--GTGGGGGTG
* * * * *
199506 GGGGGGGGGGGGGTGG-GGGGGGTGGG-G-GTGTGGGGGGTGGGGG-G-GGTGGGGGGTGGTGTG
127 TGGTGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGG-GTGGGGTGGTGTG
199566 GG-GGGTGG-GGG-GG-GGG-GGGGGTTGGGG-GGGGGGTGGG--G
191 GGTGGG-GGTGGGTGGTGGGTGGGGG-TGGGGTGGGGGGTGGGTTG
* * * * *
199604 GGTGTGTG-GTGGG-GGTGGGGGGTGTTGGGGGGGGTGGGTGGGGGGTGG-GGTGGGGGGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGG-G-TGGGGGTGGTGGGTGGGTGGTGGTGGT-GGGGGTGGGG
*
199666 GGGTGGGGTGGGGGTGGGGGG-GGGGGGGTGGGTGTGG-GGGGG-GGGTGGGTGGGGTGGTGGGG
63 GGGTGGTGTGGGGG-GGGGGGTGGGGGGGTGGGTG-GGTGGGGGTGGGTGGG-GGGG-GGTGGGG
* * * *
199728 G-GTGG-GGGTGTGGGGGTGGGGGGGGGTGGG-GGGGGTGGGGGGGTTGGGGG-GGGGGGGGGGT
124 GTGTGGTGGG-GT-GGGGTGGTGGGGGGTGGGTGTGGGT-GGGGGG-TGGGGGTGTGGGTGGGGT
199789 GGTG-GGGTGGTGGGT-GG-GGTGGGTGGGGGGTGGGG-GGGGGGTGGG--G
185 GGTGTGGGTGG-GGGTGGGTGGTGGGT-GGGGGTGGGGTGGGGGGTGGGTTG
* *
199835 GGGGT-GGT-TGGGTGGGGGTGGGGGT-GGGGTGGGTGGG-GGG-GG-GG-GG-GGGGG-GTGGG
1 GGGGTGGGTGTGGGTGGTGG-GGGGGTGGGGGT-GGTGGGTGGGTGGTGGTGGTGGGGGTGGGGG
* * *
199891 GGTGGTG-GGGGGTGGGGGGTGGGGGGGTGGG-GGGTGGGGGGGGGGGGTGGGGGGGGTGGGGGG
64 GGTGGTGTGGGGG-GGGGGGTGGGGGGGTGGGTGGGT-GGGGGTGGGTG-GGGGGGGGTGGGGGT
* * *
199954 GGGGTGGGGGGGGGGGGTGGGGGGTGGG-G-GGG-GGGGGGTGGTGGG-G-GGG-GGGG-GG-G-
126 GTGGTGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGG-GGGTGTGGGTGGGGTGGTGT
*
200010 GGGTGGGGG-GGGGGGTGGGTGGGGG-GGGG-GGGGGGT-GG--G
190 GGGTGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
*
200049 GGGGTGGGGGGTGGG-GGTGGGGGGG-GGGGG-GG-GGG-GGG-GG-GG-GG-GGGGG-GGGGGG
1 GGGGT-GGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGG
* * * *
200104 G-GG-G-GGGGGGGGGGG-GGGGGGGGGGGGGGGTGGGGGGGGGTGGGGGGTGGTGGGGG-G-GG
65 GTGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGG
* * * * *
200163 -GGGG-GGGGGGGTGGGGGG-GGG-GGGGGGGGGGGGTGGGGG-GGGGGTGGGGGGGTGGTGGG-
130 TGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGT-GTGGGT
*
200222 GGGGG-GGG-GGGGGGTGGGGG-GGGG-GGGGGG-GGG--G
194 GGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * * *
200256 GGGG-GGGTG-GGG-GG-GGGGGGG-GGGGGGGGGGGGGGGGTGGT-GTGGGGGGGGTGGGGTGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGG-GG
* * *
200315 G-GGTGGGGGGGGGGGGGGTGGGGGGG-GGGTGGGGTGGGGGGGGGTGGGGGGGGGGGGGGGGTG
65 GTGGT-GTGGGGGGGGGGGTGGGGGGGTGGGT-GGGTGGGGGTGGGT-GGGGGGGGGTGGGGGT-
* * *
200378 GTGGGTGGGG-GGGGGGGTGGGGGG-GGGTG-GGGGGGGGGGTGGGGGGGTGGG-GGGG-GGTG-
126 GT-GGTGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGT
200437 GGG-GGGGG-GGG-GG-GGG-GGGGG-GGGG-GGGGGG-GGG--G
190 GGGTGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * * * *
200472 GGGG-GGG-G-GGG-GG-GGGGGGGGGGGGGGGGGGGGGGGTGTGGGGGT-GTGGGGGGTGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGG-GTGGTGGTGGT-GGGGGTGGGGG
* * * * * * *
200531 GG-GGTGTGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
64 GGTGGTGT-GGGGGGGGGGGTGGGGGGGTGGG-T-GGGTGGGGGTGGGTGGGGGGGGGTGGGGGT
* * * * * *
200595 GGGGTGGGG-GGGGGGGTGGGGGGGGGGGGT-GGTGGGGGG-GGGGGGGTGGG-GGGG-GG-GGG
126 GTGGTGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTG
* * * *
200654 GGTGGGGGGGGGGGGGGGGGGGGGGTGGGGTGGGGGG-GGG--G
191 GGTGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
200695 GGGG-GGGTG-GGGTGG-GGGGGGG-GGGGG-GG-GGG-GGG-GG-GG-GG-GGGGG-GGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * *
200748 -GG-G-GGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG-GGG-GGGGGGGGG-GGGGG-G-GGG
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
* * * * * * * * * *
200805 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT-GGGTGGTG-GGG-GG
131 GGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTGG
* * * * **
200867 GGG-GGG-GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGG
196 GGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * *
200903 GGGGGGGGGGGGGGTGG-GGGGGGGTGGGGG-GG-GGG-GGG-GG-GG-GG-GGGGG-GGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * *
200959 -GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG-GGG-GGGGGGGGG-GGGGGTG-GG-
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
* * * * * *
201018 GGGG-GGGGGGGGGGGGGGTGGGGGTGGGGTGGGGGGGGGGGGGGGGGGTGGGG-GG-G-GGG-G
131 GGGGTGGGGTGGTGGGGGGTGGGTGT-GGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTG
201078 GGGG-GGG-GG-GGG-GGGGG-GGGG-GGGGGG-GGG--G
195 GGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * * * * * * * * * * *
201109 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGG-GGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * * *
201173 -GG-G-GGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGTGGGGGGGGG-GGGGGGGAAGG
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTG-TGG
* * * * * * * *
201234 GGGGGGGGGGGGGAAGGGGGG-GGG-G-GGG-GGGGGG-GGGGG-GGGGGAGGGG-GGGGAAAGG
130 TGGGGTGGGGTGG-TGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTG--TGG
201292 G-GGGGG-GGG-GG-GGG-GGGGG-GGGG-GGGGGG-GGG--G
192 GTGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * * * * *
201325 GGGG-GGG-G-GGG-GG-GGGGGGG-GGGGG-GG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * *
201382 GGGGGGGGGGGGGGGGGGGGGGGGG-GGG-GGG-GGGGGTGTGTGAGGGGGGGG-GGGGG-G-GG
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTG-GGGGGGGGTGGGGGTGTGG
* * * * * * * * * * *
201441 -GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTGGGGGGGGTAG-G-GGG-G
130 TGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTG
*
201502 GGGGAGGG-GG-GGG-GGGGG-GGGG-GGGGGG-GGG-TG
195 GGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
201535 GGGG-GGG-G-GGG-GG-GGGGGGG-GGGGG-GG-GGG-GGG-GG-GG-GG-GGGGG-GGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * *
201586 -GGGGGGGGGGGGGGGGAGGGGGGG-GGG-GGG-GGGGG-GGG-GGGGGGGGG-GGGGG-GGGGG
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
* * * * * * * * *
201643 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT-TGGG-GGGG-GG-GGGGGTGG
131 GGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTGG
* * ***
201704 GGG-GGG-GGGGGGTAGGGGG-GGGGGGGGGGGTTTTTTG
196 GGGTGGGTGGTGGGT-GGGGGTGGGGTGGGGGGTGGGTTG
* * * *
201741 GGGGGGGGT-TTGTTGG-GGGGGGG-GGGGG-GG-GGG-GGG-GG-GG-GG-GGGGGGGGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * * * * * * *
201796 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGAGGGGG-G-GG-
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
201858 GGGG-GGGG-GG-GGGGGG-GGG-G-GGG-GGGGGG-GGGGG-G-GGG-GGGG-GG-G-GGG-GG
131 GGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTGG
* * * *
201908 GGG-GGG-GGGGGGGGGGGGGGGGGAGGGGGG-GGG--G
196 GGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* *
201942 GGGG-GGG-G-GGG-GG-GGGGGGGAGGGGG-GG-GGG-GGG-GGAGG-GG-GGGGG-GGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* *
201995 -GG-G-GGGGGGGGGGG-GGGGGGG-GGG-GGG-GGGGG-GGG-GGGGGGAGGAGGGGG-G-GG-
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
* * * * *
202048 GGGG-GGGG-GG-GGGGGGGGGGAATAGGGGGCGGGGGG-GGGGGGGGGGGTGGGG-GG-G-GGG
131 GGGGTGGGGTGGTGGGGGGTGGG--T-GTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGG
202106 -GGGGG-GGG-GG-GGG-GGGGG-GGGG-GGGGGG-GGG--G
193 TGGGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * * * * * * * * * *
202138 GGGG-GGG-G-GGGAGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * * *
202200 GGGGGAGGGGGGGGGGG-GGGGGGGGGGGGGGGCGGGGG-GGG-GGGGGGGGG-GGGGG-G-GG-
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
* * * * * * * * * * * * *
202258 GGGG-GGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
131 GGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTGG
* * * * * * * **
202321 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
196 GGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
* * * * * * * * * * * * *
202360 GGGGGGGGGGAGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
* * * * * * *
202424 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGGGGG-GGG-GGGGGGGGG-GGGGG-GGGG
66 TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGT-GGGGGTGGGTGGGGGGGGGTGGGGGTGTGG
* * * * * * * * * * * *
202485 TGGGG-GGGG-GGGGGGGGGAGGG-GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
130 TGGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTG
* * * * *
202547 GGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGG
195 GGGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGG
202580 GGGGGGGGGG
Statistics
Matches: 5093, Mismatches: 347, Indels: 1106
0.78 0.05 0.17
Matches are distributed among these distances:
190 33 0.01
191 6 0.00
192 5 0.00
193 3 0.00
194 3 0.00
195 8 0.00
196 35 0.01
197 18 0.00
198 29 0.01
199 33 0.01
200 61 0.01
201 23 0.00
202 53 0.01
203 83 0.02
204 65 0.01
205 59 0.01
206 83 0.02
207 86 0.02
208 138 0.03
209 147 0.03
210 129 0.03
211 132 0.03
212 182 0.04
213 137 0.03
214 102 0.02
215 97 0.02
216 186 0.04
217 104 0.02
218 98 0.02
219 89 0.02
220 52 0.01
221 111 0.02
222 53 0.01
223 119 0.02
224 215 0.04
225 154 0.03
226 169 0.03
227 189 0.04
228 124 0.02
229 146 0.03
230 110 0.02
231 85 0.02
232 94 0.02
233 84 0.02
234 95 0.02
235 77 0.02
236 109 0.02
237 109 0.02
238 107 0.02
239 95 0.02
240 97 0.02
241 44 0.01
242 62 0.01
243 34 0.01
244 65 0.01
245 36 0.01
246 40 0.01
247 23 0.00
248 77 0.02
249 29 0.01
250 27 0.01
251 24 0.00
252 11 0.00
ACGTcount: A:0.00, C:0.00, G:0.85, T:0.14
Consensus pattern (234 bp):
GGGGTGGGTGTGGGTGGTGGGGGGGTGGGGGTGGTGGGTGGGTGGTGGTGGTGGGGGTGGGGGGG
TGGTGTGGGGGGGGGGGTGGGGGGGTGGGTGGGTGGGGGTGGGTGGGGGGGGGTGGGGGTGTGGT
GGGGTGGGGTGGTGGGGGGTGGGTGTGGGTGGGGGGTGGGGGTGTGGGTGGGGTGGTGTGGGTGG
GGGTGGGTGGTGGGTGGGGGTGGGGTGGGGGGTGGGTTG
Left flanking sequence: Indices 195861 -- 196360
GGGGGGGGGATTGGGGATGGCAGGTGGGGGTGGGTGGGGGGGGTGTTGGGTGTGAGGTTGGTGTA
CTATGGTGGGTGTTGAAAAGAGGAGAATGGGTGGATGAGTTTTTGTGTAGTGGGGGGTGGGGACA
TAGAGCCACACATTCACAAAGCGGATAGGGGGGGGTAGGTAGCGATCAACAAGTAGGAGGGTAGG
CATACAGGGGGAAAGTGATGATACTGAGTACAAGTTGGGAAGGTGTTGAGTGGTGAGTGTGGTAG
GGAGGAGGGAGTGATGTAGTGGGGGTGTTGGTGATCTGGGATGTGGGAGGGGTTGGTTGGGGGGT
GGGTGTGGTATATGTCAGTGTGGGGTGGTATGTCTCTAGGTAGAGGAATTAGATGTTTTGGGTGT
TTGTGGTTGGGGGTAGAGTATGTTTGGGGGGGGGGGGGGGATGAGGGTGTGATGGAGAGTGAGAG
TGTGGGTAGTGTGAGGGTGTGGGAGGTAGTGGGAGGGGGAGGGGC
Right flanking sequence: Indices 202580 -- 203079
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAATTTGAGAGGGGGGGGAAGGGGGGGGAAGA
GGAGAGGGAGAAAGGGAAGGAGGGGGGGAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGG
CCTCTATGGTAGAATAAGTCGGGGAGGCCTGAGAGGCAGTGGTTTACCCTGTGGCGGATGTCAGC
GGTTCGAGTCCGCTTATCTCCAGCTCGTGAACTTGGCCGATACAAAGGTATATGATAGCACCAAA
TTTTTCCGATTCGGCAGTTGGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATT
TAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAACGGCGAGGTTCAAACGAGGAAAGGCTTAC
GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTT
GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGTCAACCTTTC
Found at i:202630 original size:1 final size:1
Alignment explanation
Indices: 197419--202611 Score: 4563
Period size: 1 Copynumber: 5193.0 Consensus size: 1
197409 GGGGTGGTGT
* * * * * * * * * * *
197419 GGGGGTGGGGGGGGGGTGGGGTGGGTGTGGGGGGGGGTGGGGGGGTGGTGGGGTGGGGGTGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * * *
197484 TGGGGTGGGGGTGGGGGGGTGTGGGGGGTGTGGTGGGGGTGGGGTGGGGTGGGGTGTGGGGGGGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * **
197549 GTGGTGGGGGTGGGGTGTGGGGGGGGTGGGTGGGGGTGGGGGGGGGTGTGGGTGGGGGGGGTTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * *** * * * * * *
197614 GTGGGGGTGTGGGGGGGTGGGTGGGTGGTGTTTGGGTGGGGGTGGGGGGTGGTGTGGGGGTGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * ** * * * * *
197679 GGTGTTGGGGGTGGGTGGGGGTGGGGTGGGGGGGTGGGTGTTGTGGGGGGGTGGGTGTGGGGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * * * * * *
197744 GGGGTGGGTTGGGGGGGGTGTGGTGGGGGGGGTGGGGGTGGGTGTGTGGTGGGGGTGTGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * * *
197809 TGGTGGTGGGTGGGGGTGGGGGTGGGTGGTGGGGGTGGGGGGGTGGGGTGTGGGGGGGGGTGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
197874 GGGGGTGGGGTGGTGGGGTGGGGGGGGGGGGGTGGGGTGGTGGGGGGGGTGGGGTGGGGTGGTGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * *
197939 GGGGGGGTGGTTGGTGGGTGGGGGGGGTGGGGTGGGGGGTGGGGGGTGGGGGTGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** * * * * ** * * * *
198004 GGTGTGGGTGGGGGGTTGGTGTGGGGTGGGGGGTGGGGGGGGTTGGGGGGTGGGGTGTGGTGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * ** * * * * * * * ** *
198069 TGGGGGGGGTGGGGGGTGGGGTGTTGGGTGGTGGGGGGGGTGGGTGTGGGGGGGTGTGGGTTGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * * * *
198134 GTGGGGGGTGTGTGGGGTGGGGGGGGGTGTGGTGGGGGTGTGGGGGGGTGGTGGGGGTGGTGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * ** *
198199 GGGTGGGGGGGGGGTGGGGGGTGGGGTGGGGGTGGGGGTGGGGTGGGTGGGGGTGTTGGGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * ** * * * * * * * * *
198264 GGGTGGGGTGGTGGGGGTGGGGGGGTTGGGGGGGGGGTGGTGGGTGTGGTGGTGGGGGTGTGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * ** * * * * * *
198329 GTGGGTGTGGGGGGGGGGTGGGGGTGTGTGGGGGGGGGGTTGGTGGGGGGTGGTGGGTGTGGGGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * **
198394 GGGGGGTGGGGTGGGGGGTGGGGGGGTGGGGGTGGGTGGGGGGGGGTGGGGTGGGTGGGGTTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * ** * * *
198459 TGGGGGTGTGGGGTGGTGGTGGTGGGTGGGGGTGGGGGGTGGTTGGGGGGGGTGTGGGGGGGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** * * * * * * * * * * * *
198524 GGGGGTTGGGGGTGGTGGGGTGTGGGGGTGGGGTGGGTGGGGGGGGTGTGGGGGTGTGGTGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * ** * * * ** * * * * *
198589 TGTGGTGGGGGGGGGTGTGTTGGGTGGTGGGGGGGGTGTTGTGGGTGGTGGGGGGGGTGGGGGGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** * * * * ** * * *
198654 TGGTGGGGGGGGTGGGTTGGTGGGGGGGGGGGGGTGGGGGTGGGTGGGGGGGTTGTGTGGGGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * ** * * ** * *
198719 TGGGTGGGTGGGGGTGGGGGGGGGGGGTGTGGGGGTTGGGGGGGTGGGTGTTGTGGGGGGGGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * ** * * * * * * * *
198784 GGGGGGTGGGTGGGGGTGGGGGTGGTTGGTGGGGGGTGGTGGTGGGGGGGGTGGGTGGTGGGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
198849 TGTGTGGGGGGGGGGTGGGGGGTGTGGGGGGTGGGTGTGGGGGGGGGTGGGGGGTGGGTGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * *
198914 GGGTGGTGGGGGTGGGGGTGGGGGGGGGTGGGTGGGGTGGGGGGGGTGTGGGTGGGTGTGGGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * *
198979 GGGGGGTGGGTGGTGGGGGGGGGTGGTGGGGGGGGGGGGGTGGGGGTGGGGGGTGGTGGGTGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * ** * * * * * ** *
199044 GGGGGGGTGGGTGGGGGGTGTGGGGGGGGTGGGGGGTTGGGTGGTGGGTGTGGGTGGGGTTGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * *
199109 GGTGGTGTGGGGGGGGTGGGGGTGGGGTGGGGGGTGGGGTGGTGGGTGGGGGTGGTGGGGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * ** * * * * ** *
199174 GTGTGGTGGGGGGGGTGGTGGGTGGTGGGTGGGGGGGGGTTGGGGTGGTGGGGGTGTGGGTTGGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** * * * * * ** * * * * ** *
199239 GGGGGGTTGGGGTGGGTGGGGGGGGTGGGTGTGGGGTTGGGTGGGTGGGGTGGTGGTTGGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * * * *
199304 GGGGGGGTGGGGGGTGGTGGTGGGGGGTGTGTGGGGGGTGGGGGTGGGGTGTGTGGGGGGTGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** * * * * * * * * *
199369 GGGGGTGGGTGGGTTGGGGGGGGGGTGGGGTGTGGGGTGGGGGGGGTGTGTGGGGGGGGGTGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * ** * * * * * ** *
199434 GGGGTGGGGGGGTGGGGGGGGGTGTTGTGGGGGGGGGGGGTGTGGGGTGGGGGGGGGGGTGTTGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * *
199499 GGGGGGGGGGGGGGGGGGGGTGGGGGGGGTGGGGGTGTGGGGGGTGGGGGGGGTGGGGGGTGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** * * * * * * * *
199564 TGGGGGGTGGGGGGGGGGGGGGGTTGGGGGGGGGGTGGGGGGTGTGTGGTGGGGGTGGGGGGTGT
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * *
199629 TGGGGGGGGTGGGTGGGGGGTGGGGTGGGGGGGGGGGGGGTGGGGTGGGGGTGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * * * * * *
199694 TGGGTGTGGGGGGGGGGTGGGTGGGGTGGTGGGGGGTGGGGGTGTGGGGGTGGGGGGGGGTGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ** * * * * * * * *
199759 GGGGTGGGGGGGTTGGGGGGGGGGGGGGGTGGTGGGGTGGTGGGTGGGGTGGGTGGGGGGTGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** * * * * * *
199824 GGGGGGTGGGGGGGGTGGTTGGGTGGGGGTGGGGGTGGGGTGGGTGGGGGGGGGGGGGGGGGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * *
199889 GGGGTGGTGGGGGGTGGGGGGTGGGGGGGTGGGGGGTGGGGGGGGGGGGTGGGGGGGGTGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * *
199954 GGGGTGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGGGGTGGTGGGGGGGGGGGGGGGGGTGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * *
200019 GGGGGGTGGGTGGGGGGGGGGGGGGGTGGGGGGGTGGGGGGTGGGGGTGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
200084 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGTGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * *
200149 GGTGGTGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGTGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * *
200214 GTGGTGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * *
200279 GGGGGGGGGGGGGGTGGTGTGGGGGGGGTGGGGTGGGGGTGGGGGGGGGGGGGGTGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * * *
200344 TGGGGTGGGGGGGGGTGGGGGGGGGGGGGGGGTGGTGGGTGGGGGGGGGGGTGGGGGGGGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * *
200409 GGGGGGGGTGGGGGGGTGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * * * *
200474 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTGGGGGTGTGGGGGGTGGGGGGGGGTGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** *
200539 GGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * * *
200604 GGGGGGGTGGGGGGGGGGGGTGGTGGGGGGGGGGGGGTGGGGGGGGGGGGGGTGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * *
200669 GGGGGGGGGGTGGGGTGGGGGGGGGGGGGGGGGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
200734 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * *
200799 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
200864 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGTG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
200929 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * *
200994 GGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTGGGGGTGGGGTGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201059 GGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201124 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * ** **
201189 GGGGGGGGGGGGGGTGGGGGGGGGTGGGGGGGGGGGGGGGGAAGGGGGGGGGGGGGGGAAGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* ***
201254 GGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGAAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
201319 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * * *
201384 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTGTGAGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*** ** *
201449 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTGGGGGGGGTAGGGGGGGGGGAGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201514 GGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201579 GGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** *
201644 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGGGGGTGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** ****** *** **
201709 GGGGGGGTAGGGGGGGGGGGGGGGGTTTTTTGGGGGGGGGTTTGTTGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201774 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201839 GGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
201904 GGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
201969 GGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* * **** * *
202034 GGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAATAGGGGGCGGGGGGGGGGGGGGGGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
202099 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
202164 GGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
202229 GGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
202294 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
202359 GGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
** *
202424 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
202489 GGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
*
202554 GGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
202612 AGAATTTGAG
Statistics
Matches: 4015, Mismatches: 1177, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 4015 1.00
ACGTcount: A:0.01, C:0.00, G:0.88, T:0.12
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 196919 -- 197418
GTGGGTGGGGTGGGGTGGTGGGGGTGGGTGGGTGTGGGGGTGGGTGGGGTGGGGTGTGGTTGGGG
GTGGGGTGGGGGTGGGGTGGGGGGTGGTGGGGGGGTGTTGGGGTGGGGTGTGGGGTTGTGGGTGG
GTGGGGGTGGTGTTGGGTGGGGGTGGTGGGGTGGGGTGGTTGGGGGTGGGGTGTGTGGGTGTGGG
GGGTGGGGGGGTGGGGGTGTGGGGTGGGTTGGGGTGGGGTGGGGGGGGGTGGGTGTTGGGTGGGG
GTGGGGGTGTGGGTGGTTGGGGGGGTGGGGTGTGGGGTGGTGGGTGTGGGGGGGGGGTTGTTGGG
TGGGGTGGGTTGGGGTGGGGGTGTGGGTGGGGGTTGTGGGTGGTGGGGGGTGGGTGGGGGGGTGG
GTTGGGGGTGTTGGGTGTGGGGGTGGGGTGGGGGTTGTGGGGGTGTGGGGGGTGGGTGGGGTGTG
GGGTTGGGGGGTGGTGGGGGGGTGGGTGGTGGGGTGGGGTGGTGT
Right flanking sequence: Indices 202612 -- 203111
AGAATTTGAGAGGGGGGGGAAGGGGGGGGAAGAGGAGAGGGAGAAAGGGAAGGAGGGGGGGAAGC
TGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATAAGTCGGGGAGGCCTGA
GAGGCAGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAGCTCGTGAAC
TTGGCCGATACAAAGGTATATGATAGCACCAAATTTTTCCGATTCGGCAGTTGGATCTATGATTT
ATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAG
TTAACGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAG
GGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCGAAT
AGGTCAACCTTTCGAACTGCTGCTGAATCCATGGGCAGGCAAGAG
Found at i:211603 original size:16 final size:17
Alignment explanation
Indices: 211580--211622 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
211570 TAATTTATTC
211580 TATTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
211597 T-TTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
211613 TATTCAATTC
1 TATTCAATTC
211623 GCCCTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTCAATTCAAATGAA
Left flanking sequence: Indices 211080 -- 211579
CGAGAAGATACTTCACACGGGAGGAATCGTTTGTCAAAAAAAGCTGATGCACGTAGCTCGCTGGA
AGCTAAGAGTCAACTAGCCCAAAAACGGGAATCGCTGTTTGAGTAGTTCCTTAATCCCTTCTTAC
TCATTACAGTCAAGTCATGCCACCAGCCAGCCGGGGCACATTGGCCTCAACGCTCGCGTTCTACG
TTTACTATGGGGTACTATTTTCCTTACCGGAAGCAAAGGGCTCATCTCAGTAGGTGCTTGTGCTG
TGGTTTTTAGTTCCTTGGCTTGTGTTCTAATAGTAACCACAGGAAAAAAGCGGGGAGCATTCTCT
AAAAAATAATGATTTAGGAATATGGTAGGGTTCATAGTCCCTAGTCTCGTTTTTGCCGAGCCTGC
AAACGTAGGAGCAAACTACTACGCAAGTGGAGGCGTTGCGTTAGCACTACACCTAACAAGCAGCT
TTCATTTTTCAAATTCAAATGAATATATATTAATTTAATTTATTC
Right flanking sequence: Indices 211623 -- 212122
GCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTGATTTCGGCATATGATCGCCTATAAACCA
GAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCGC
TGAAGCACAAAATGCAAGATTTCATAGAAGAAGGAAAAATCAACGTGGCGGATGAACAGGAAGCT
CCTAAGAACCCCAACGAAAAAATGGGAGAATAGAGCAGCCCCCTAGTCACGCTCCGGTCTCAACA
TGCTGGGCCGAGGAAGTGTCCGATTTCCAACATCCCCTACCATCACTACAATTAAAGCTATTAAT
GCTATCTGGCTTTGTGAGGAAGATCCCTCCCACTGGATCATCATGACCCCTACGTTACGGCTTCC
AAAGGCGATCCTAAGGGAAGAAGAATTTGGAAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGG
AAGCTCCACCGAAAGAAGAAGAGGAAATAAGAGGACTAGAGTTTC
Found at i:232243 original size:13 final size:13
Alignment explanation
Indices: 232225--232252 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
232215 CGCATTTCTC
232225 TCTTAGCCTTGGA
1 TCTTAGCCTTGGA
232238 TCTTAGCCTTGGA
1 TCTTAGCCTTGGA
232251 TC
1 TC
232253 GGAGAATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.39
Consensus pattern (13 bp):
TCTTAGCCTTGGA
Left flanking sequence: Indices 231725 -- 232224
ACGGGCAACTAAGATATTAGGGAGTCTTACTGCCCGTCCCACAATTCGGAATGCGAAGGCCCTTC
TCTTTAAGTTTCCTTCTTTTCAAGAAAGATGGCGAATAAAGGCGAACTAAGAGAGGGTAACGGGT
GAACTACCTGACAGGTAAGAACCGCGCAAATCGATTGCTTGAAACCAGCGATGCAAATCACACTA
AGAGGGGTTCGAAGTGGGTGGTCAACATGGACAGAAGTGGGTTGTCATCTTGGAGCAAGTGAAGG
TACAATTGGAGGCTACAAGTGGAGGCGCTTGAGGCGCCGCAACGCGTTAGGTTGTTAATAGAAGG
GCTCCTGCTAGCCCGTCGGCTGAGCCCAAACGATAGATTCAAGTGAAAAGGAAGGTCTCTTCTTC
ATATAGTGATACGCAAAAGATGCCGGGAAAACAAGGAAAGGTTTATCGTAGATGTGTAAAGTTTG
CTTCTACACGGAACCGAAGACCTTCGGGAACAAATCGCATTTCTC
Right flanking sequence: Indices 232253 -- 232752
GGAGAATTACCTATATTATACAAAATTAGGGCACGGTTAATAAGAAGGCATTCGTTACGACCTTC
TTGGTCTCTTTGGACGCCGCTTCCAGCTTCGGGGAAGTCATTCTACATGCTGGTCCTACTCGGGT
GGTGCTTAATTCATGCCTGTTCAGGCCGATCGGAATGGGAAATAAGAGAGCTAACCCTTCTAAAG
AGAATTGGGGCTTTCCATTTATATAGAGCTAGTGTCGTTCCGGGTAGCGACCCTGGTCGATCCTC
GATGTCGTTGGATCAGTAGATTCGTTTTGTGATTATCCCTTGTTCGTTCCTGGTTGTTTAGCGCA
CCCGCTTCTTCCTAGAGCTTAGGCAGTGGAGGTTCCTCCCATACTACACTCTACAGATTCCTTGA
CTTGAGACTTCTTTCTTTGATCCATTCCCCTATTCATACCAGAATCCATTTGTCATTATGGCTTC
AGGTATGAATGATTTACACAGACTACTTCTGAGACATAGAGACGG
Found at i:235889 original size:13 final size:13
Alignment explanation
Indices: 235871--235898 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
235861 GTAATTCTCC
235871 GATCCAAGGCTAA
1 GATCCAAGGCTAA
235884 GATCCAAGGCTAA
1 GATCCAAGGCTAA
235897 GA
1 GA
235899 GAGAAATGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.14
Consensus pattern (13 bp):
GATCCAAGGCTAA
Left flanking sequence: Indices 235371 -- 235870
CCGTCTCTATGTCTCAGAAGTAGTCTGTGTAAATCATTCATACCTGAAGCCATAATGACAAATGG
ATTCTGGTATGAATAGGGGAATGGATCAAAGAAAGAAGTCTCAAGTCAAGGAATCTGTAGAGTGT
AGTATGGGAGGAACCTCCACTGCCTAAGCTCTAGGAAGAAGCGGGTGCGCTAAACAACCAGGAAC
GAACAAGGGATAATCACAAAACGAATCTACTGATCCAACGACATCGAGGATCGACCAGGGTCGCT
ACCCGGAACGACACTAGCTCTATATAAATGGAAAGCCCCAATTCTCTTTAGAAGGGTTAGCTCTC
TTATTTCCCATTCCGATCGGCCTGAACAGGCATGAATTAAGCACCACCCGAGTAGGACCAGCATG
TAGAATGACTTCCCCGAAGCTGGAAGCGGCGTCCAAAGAGACCAAGAAGGTCGTAACGAATGCCT
TCTTATTAACCGTGCCCTAATTTTGTATAATATAGGTAATTCTCC
Right flanking sequence: Indices 235899 -- 236398
GAGAAATGCGATTTGTTCCCGAAGGTCTTCGGTTCCGTGTAGAAGCAAACTTTACACATCTACGA
TAAACCTTTCCTTGTTTTCCCGGCATCTTTTGCGTATCACTATATGAAGAAGAGACCTTCCTTTT
CACTTGAATCTATCGTTTGGGCTCAGCCGACGGGCTAGCAGGAGCCCTTCTATTAACAACCTAAC
GCGTTGCGGCGCCTCAAGCGCCTCCACTTGTAGCCTCCAATTGTACCTTCACTTGCTCCAAGATG
ACAACCCACTTCTGTCCATGTTGACCACCCACTTCGAACCCCTCTTAGTGTGATTTGCATCGCTG
GTTTCAAGCAATCGATTTGCGCGGTTCTTACCTGTCAGGTAGTTCACCCGTTACCCTCTCTTAGT
TCGCCTTTATTCGCCATCTTTCTTGAAAAGAAGGAAACTTAAAGAGAAGGGCCTTCGCATTCCGA
ATTGTGGGACGGGCAGTAAGACTCCCTAATATCTTAGTTGCCCGT
Found at i:237026 original size:21 final size:21
Alignment explanation
Indices: 237002--237047 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 21
236992 CCATCTCAAT
237002 CTCTTCCATCTGAACCAGCCG
1 CTCTTCCATCTGAACCAGCCG
*
237023 CTC-T--ATCTGAACCAGTCG
1 CTCTTCCATCTGAACCAGCCG
*
237041 CTATTCC
1 CTCTTCC
237048 TTCTTCCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 6
0.71 0.07 0.21
Matches are distributed among these distances:
18 15 0.75
19 1 0.05
20 1 0.05
21 3 0.15
ACGTcount: A:0.20, C:0.39, G:0.13, T:0.28
Consensus pattern (21 bp):
CTCTTCCATCTGAACCAGCCG
Left flanking sequence: Indices 236502 -- 237001
GCTTCCTCATCTCTAAAGCTGTTGAACTGATTCTCGTTCCATACGAACAAACTCGGAATTACCTT
GTACAATTATATTAGAGTCCCTCTTTCTTTTTTTCAAGTGAAATCGACGATCAAAGAACTAGAGC
CGAAAGTGCCCTTGCTAAGGCGAGTCTCTGCTCGCCGAGTCCATCATCTTTCTCACTCCGGATAT
ACGCCATTTCAAGCCATGCGTTCTTTTGCCTTGATTCAAGATAGAGTGACTCTTCATCGTACTGA
TTCAACGCGAAGTGAGTGGTCCATTTTTTGCATCCGGCATTCCTATTGATAGTTGCTTCTGCTTG
TAGCACGCATGTTGCTTTTGTTGCTGATGACCATAGGGTCTTCAATTGGAAAGCCCTTTTGAAGC
CGGATAAGTGTGTTCAATTGCCCGATGCCCCATTACAATATCAGGCAATACTTGATAGCTTGTTT
TCCGGGCTTGGTTTCGAGAGGCCACCACAGCTTGACCATCTCAAT
Right flanking sequence: Indices 237048 -- 237547
TTCTTCCAGGCCTAGGTTTGCGGATGCTAAGCAGATCCCTACCTTGGAGGAAGCCTATTTTTGCT
TCAATCTTGAGGATGCCGTTTTGACTTCAATGGAAAGGTTAAAGCCGGCACTAAGGTCCAGAATG
AAAGAGAAGCAAGTCATGAGGTTGACCGAAACGGGTGATAGTTTCATACCCGTAATTACATAAAA
GAGAGAGAATCACAACGGCAATTGCTCTTCTTTCAAGTGAGTGACATAGGTTCGAGCAACCACTG
ACAAAAGCGCCCTTTTTTCTAAGGTAGATCTCCGGTCGCAAAGATCTTTATCTCACGCTTGCAGC
CCGCGGATGCCCTGTTGTTTTGCCTTGTGGTATAGGGCCTGTTCCGTGTGCTGTATTAAGAATTC
ACAACTTGAAGAGATCTTTCTTCTGCTCAATCATATGAGGGAGCGCCTTCCCTTCTTCCATGTCC
TGGATCTATATCGACGAAGGGCAACGAAGCTTCTGCTCCCGCTGG
Found at i:255888 original size:18 final size:18
Alignment explanation
Indices: 255848--255890 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
255838 AGAGCCCTGC
255848 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
255867 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
255884 CATAGTC
1 CATAGTC
255891 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 255348 -- 255847
CACCTAACAAAGAAGCATAGGTGTAGTTCCGTCAGGCTTCCCCTCGCTCTCCTTTCCCTAATATG
AACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCGCTTC
AAAAGGCGAAACTCTCAATTCTCGATAAAGGGTTTGCTTGTTATTTGAAAAGGCGGACACTTTTA
GTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCT
CCGGCTCCGCGCACCTGCCCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGAACGTCCCGCGT
TCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAC
TATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGCCCTATCACGTAAGGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC
Right flanking sequence: Indices 255891 -- 256390
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:268978 original size:39 final size:39
Alignment explanation
Indices: 268924--269002 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
268914 CGATTTTCTA
*
268924 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
268963 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
269002 T
1 T
269003 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 268424 -- 268923
ACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCCATTGGTCCTA
GTATCATAGGCGACCGAACGGCCGCCCCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 269003 -- 269502
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAAGCGAAGTC
AAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTTGTGGT
TGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTATATAAGG
TCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATGCCGAAATCAAGTAGAACCTTAAG
TCCAAGTCAAATAAATAGGGCGAATTGAATATTCATTTGAATTGAAATTCATTTGAATTGAATAG
AATAAATTAAATTAATATATATTCATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGTG
CTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATTCAGAACT
Found at i:269379 original size:16 final size:17
Alignment explanation
Indices: 269349--269391 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
269339 TAAATAGGGC
269349 GAATTGAATATTCATTT
1 GAATTGAATATTCATTT
269366 GAATTGAA-ATTCATTT
1 GAATTGAATATTCATTT
269382 GAATTGAATA
1 GAATTGAATA
269392 GAATAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (17 bp):
GAATTGAATATTCATTT
Left flanking sequence: Indices 268849 -- 269348
GCTACTCCTAGTAGAAGTGGTAGAATTATTCCAAGTATTTCCGCTGGAACTGCTATGTACGTTTT
CGATTTTCTATTCACTCATGATCTGGCCTGGTCGACCCGATCATGATATTTCACTCATGATCTGG
CCTGGTCGACCCAATCATGATATTGAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGA
AGAGTGGAAGATGGTGCAACATCGAATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTC
ACTTGACTGAGCATAAGCGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCT
ACCTTCATTCAACAGATTTGTGGTTGAGTCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCC
ACCTTCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATAT
GCCGAAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGC
Right flanking sequence: Indices 269392 -- 269891
GAATAAATTAAATTAATATATATTCATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGT
GCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATTCAGAACTTGACTAAGCCTTTTTCCCT
TAAATGACGAGGGTAGTAGTTTGCAGCTTTCAAGCCGGAGTTTGTTGGTTCAGGGCCAGACCGAC
TACTCCCAGAGCACTCATCCATAAACCGGTTACTGGCAAAATGAAATATTAAGAGATGTAACCAA
CGGAAATAGCAAGCCCGAATCTTTGGGACCAGAAGCGGTTAGCAGTGACCCATAGGTCTCTTCAG
CGGTGAAAAGCAAAAGCACGGAATGTAAATTAATTCCCATCTTCGAATTCAGTCTTCTCTACAGT
AGCACCATGAATAGCGCATAGCGGAGCAGCGCCCAGGAGGCAAGCAACTCCAATCATATGAAATG
GGTTCAACAATCAATTATTCAAACAAGAATATCTTTCTAAAAAAA
Found at i:285775 original size:5 final size:5
Alignment explanation
Indices: 285765--285802 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
285755 TCACCGCTGA
*
285765 AAGAG AAGAG AAGAT AAGAG AAGAG AAGAG AAGAG AAG
1 AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAGAG AAG
285803 TGAGCGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.03
Consensus pattern (5 bp):
AAGAG
Left flanking sequence: Indices 285265 -- 285764
AAAGCTCTCTTTCTCATGCTAGTAGTAAAGTAAGGGAGGCTAGCTCTAAGTGGTCAGTAGTCCAG
TACCAAAGCAAGCTTAAAGGAAGCATGCAAGCACTTCAATAGTCTTCTCTTGATCCACTATGCAT
TAAGCAAGTTAATAAACAAAGCCCTCAGAATAAGGAATAAGGCAGGCTCGACAAAAGAGAGAAAG
GAAACAGAGCAAGAGAGTCCGTCCACTGGAAGAAAGAAGGAATAAGGCAAGCCAGCCAGGTAGAT
TAGTTGAGTAGGTATTCACTACCCCACCCAACCAAGCGAGCCATACCAGCAAGGAGGCACCAAGC
AAGCCACAGGACTGAGAGCCTTATAGTTCATGGGAGTACCAATTGACAGATTAGAGGTAGTTGCC
GCTAAATACAAACTGTAGATCGAATTAGAACTAACATTTTCAACATATGTAATTTCACATAAGAG
AGTTTTCTTTCCTCTTAAATTAAATTAAAGAAGGGTCACCGCTGA
Right flanking sequence: Indices 285803 -- 286302
TGAGCGTTTATGACCTATTTAGCTAGATTTCTCTCTAAACTGCATACCACCTTCCAGCAAAGAAA
ACCGCCGTGCTAACGGACAACAGCTTTTTGCGCTCTACCTTGATGTGAGCTTTTGAAGCATACCA
GCTTCTTTGGCCATCGGTTTTATTGTAGCTTCTTTGTAATTAAATCACATACATAGGCACGCACA
TCTTTTTTTCTTTTTGAGAGGTCTTGCTGACAGATTCATCTTCTGCGGTTCTCTGTCAGCTTCCA
CCAAGAAAACACCTGTGGTAACGCTATTAACGAATTGGGGCTGGTAGCGCTAGCGCGCTCATCCG
TTGCTTGTTCGCTCTACCGTTGTTTGTTGCGCTACGGCTTTCGCGCTAGGCGCTCATCCCTAGCT
TGTTCCCTAACGCTTACCTTTCTTTCATTTCTTTCTTAAAGTATAAAACGGATATTGATTCTCTT
CCCCATTCAGGAAGCTCAATTGAAGGATTTCCGTGCTTCAGTTTT
Found at i:300069 original size:25 final size:25
Alignment explanation
Indices: 300039--300094 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
300029 TTCTGAACGA
300039 AAGCCTTACATTCACTATGAATAAG
1 AAGCCTTACATTCACTATGAATAAG
*
300064 ATGCCTTACATTCACTATGAATAAG
1 AAGCCTTACATTCACTATGAATAAG
300089 AAGCCT
1 AAGCCT
300095 AATGCATTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (25 bp):
AAGCCTTACATTCACTATGAATAAG
Left flanking sequence: Indices 299539 -- 300038
GCCAACTCGATTGCATCGATCCTTCTCTATTCTAGGAGCACCCAATCCTGTCATTCTCTTGTAAA
GTGGACGATTTCATCATAACAAGGAGAACCCAGTACAAAGATAGATCCATTCGCTGAGCTCGAGA
GAGCGTTTTGAACATTAACAAGAATTTACCACTGCACAATCATTTCAATTAGGATCTGCACCAGT
AGCTCTCAGCTGCTACAATTGCTTTAGTGGGAGCACCGGTAGAAAAACTGGCGGTCAGCACCCCC
GAGCACAGCCCTCAACACGCAATATTGATTGTCAGGCCACGCTGTCAGGAACACAACGGATTGCA
TCCCGAGCGTTAGGTGAAGAGGTACGTCAAGGTATCCGAAATGAAAAGAATCCGCTTTACAATAG
CCTTTAGTTTCATGTCATTAAAGAGGTCGACGTAGCGAACCAGGTTCTTCTAACTCAAGTCAGTA
GTGAATGGAAGAGCGTATTTGTTGAAAAAGGAGCCTTCTGAACGA
Right flanking sequence: Indices 300095 -- 300594
AATGCATTCCAATCAACCACTTGAAGAACTTCTCATAGAAAGCTGATTTTAGACTGTTTATCAAG
AACTTCATAAACAGAGATCTAAAACTATTATTCCCGACTCTCGCTTCAAAGACAGTTTAAGGAGA
AATCCGGAAGACCTCCTAATAATTTTTATCTAGTCTAGGCTTGCTTCTTTTCCCTCGAATAGAGC
CACCTACGAATGTTTGGGATCACTTCGCCCCTGAACCTTCAATCTCCTTGGGCTTTAAGGAAGTG
GATGGGAAATCAAACCATAAGATGACTCGTACTTCGATCCCCTGGCACTTGGTTTTGAGCTCTCT
ATTTCTTATGGAGAGACAGCCCCTTCCCTCTTTTATACACCATTCATCGCTCCTCATCCCGTGGG
TTCTGCGGGAAAGGAGATAGGGAGAAGCCCCGGCCGTTTTCTTTGGCTTTGACCTCGGGATGCAC
GCAATGTGGGCGGTGTGTCAGGGAGCCTTTGCCTTCTTCGAAAAG
Found at i:309628 original size:21 final size:21
Alignment explanation
Indices: 309590--309629 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
309580 TTCTTTCATC
*
309590 ATAATGAATAAATAAAAAATA
1 ATAATGAACAAATAAAAAATA
309611 ATAAT-AACAAATATAAAAA
1 ATAATGAACAAATA-AAAAA
309630 AAGATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
ATAATGAACAAATAAAAAATA
Left flanking sequence: Indices 309090 -- 309589
GTTGACCACGGCCTATAGGGACCAGGCTATCTACTGCTTTTAACCCTGTTTGCATAGGCTCGTGC
ACGGATTTCCGTTCAATAATCCCCGGGGCTTTCACTTCGACACGTCTTCGTTCGTGATCGCTTAG
AGCCCCTCTTCCATCAATAGGTACTCCCAACGCATCGACCACACGGCCTAGCATTGCCTTTCCTG
CAGGAACATCAACAATAGATCCAGTACGCTTGACAAGATCTCCTTCTTTAATAGCGGTATCACTT
CCAAAGACAACAATACCGACATTCTCATTCTCAAGATTCAACGCTATTCCTTTCACACCGCTGGC
AAATTCCACCATTTCCCCGGCTTGAATCTCATTCAATCCATAAACACGCGCAATCCCATCTCCAA
CTGAGACCACTCGACCGATCTCATCCACTTGGAAATTCGTGTAAAAGTTGGTAATTCGACTTTCT
AAGAGAGTCGTTAGTTCAGCAGCGCGGGGAGAGAATTCTTTCATC
Right flanking sequence: Indices 309630 -- 310129
AAGATTAAATTAATCAATCTAAATTATTTTTTTATATAAAAAATAATCAAAAAAACAAAAAATAA
AAAAGATTAAATTAATCAATATCAATCTTTGCAATTTCTATTTTGATTTGGCCTATGGAACTCAT
TAAATGTCCTCACAAAACAAGAAATGCATTTTTCATTTCATTTTCCATTTCTTTCTTTTATAGAG
TGAAGTCAATTTGTTAGAGTGAAGTAAAGAAATGAAATGAATTACATATAAATGTTATGTTCAAA
AGGCAGAATTTATGTTTAAGAAAGAAAAACCTAAAGAACTAGGGAGAACAGCCAACCAGTAGCTC
AACAAAGAACTGAACTCCCACCCAAAGACAGAAACAATGCAAGAATTTACCTTTCAACCCATATT
TGAGAACTTCATCGGAACAGACCAATTACCAGATCCATCTACATTTTCTCAATGAAAAAAAAAAT
AATGCCAAACAATAAGAAAAAGTCACTCGAAATCCATAAAAATCT
Found at i:317720 original size:42 final size:42
Alignment explanation
Indices: 317660--317756 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 42
317650 AAAGCTAATA
**
317660 CAACAAGCAACTCCTGAGCGCGCT-A-GCGCGAAAGCC-TA-AGTG
1 CAACAAGCAACGGCTGA--GCGCTAACGCGCGAAAGCCGTATA--G
*
317702 CAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAG
1 CAACAAGCAACGGCTGAGCGCTAACGCGCGAAAGCCGTATAG
317744 CAACAAGCAACGG
1 CAACAAGCAACGG
317757 AACAAGCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
40 5 0.10
41 1 0.02
42 39 0.81
43 2 0.04
44 1 0.02
ACGTcount: A:0.34, C:0.29, G:0.28, T:0.09
Consensus pattern (42 bp):
CAACAAGCAACGGCTGAGCGCTAACGCGCGAAAGCCGTATAG
Left flanking sequence: Indices 317160 -- 317659
GCTGGGAGAGATTCTGCTTCCGGACCACCTTTATCAGTCAGATAGCGAGAAATCAATTAGCAATG
AAGACCACCTAAATAACTGCGGCCGAGAATAACTATCCCTCATAAACAACCTCAAGCTTGGAATG
GATCTTACACCAGTGGTTGACCGGCCTACGCAGATCGTACACAAGGTACCTGACCATGATTGCGA
GGCACTACTGGACCCTAGCTTCTTGATGCCTATTCCGTACATGAGGCGATTCGATGAATTGAAGC
TTCTTATATACGCTAAAAAACAAATCGTGGCAATGATAGTTGAGAGTCGACCTCACTTAAGATCA
GCTTTCGAAAGCTAATACGCAACAAACAACGGTAGAGCGCGAAAGCCCCATTCAATAAACGTAAG
GTGCGTTAGTAACGCGTTTAAGACGAATTGCGTTTTCTTGCTGAAGCTAATACGCAACAGAAGCT
AAGGAGCAACAGAAGCTTCTATGCTGAAAAGATAGAAAGCTAATA
Right flanking sequence: Indices 317757 -- 318256
AACAAGCAACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAA
TTGCGTTTTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTAC
TACCGCGAAAGCCCCAGTTCGTGTTAATAGCGTTAGCCTTTACATATATAGGGCGTTTTCTTGCT
CACGCGCATACGTTTTCTTGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGT
TTTCTTGCTGAAGCGAATACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCT
ACAACCGGAAGCTGAAAAAACAAAAAAAGAGAGAAAGAACATACACCAAAGAAGCTCATAGGCAA
CAGAAGCTCATAGGCGACAGAAGCTCATACGCCACAGAAGCGAATATACTATTGCTATGATACGC
TCATAGGCCACAGAAGCTCATAGGCGACAGAACCGGCTCTACAGC
Found at i:317968 original size:22 final size:22
Alignment explanation
Indices: 317940--317996 Score: 70
Period size: 17 Copynumber: 2.8 Consensus size: 22
317930 ATATATAGGG
317940 CGTTTTCTTGCTCACGCGCATA
1 CGTTTTCTTGCTCACGCGCATA
317962 CGTTTTCTTGCT-----GCATA
1 CGTTTTCTTGCTCACGCGCATA
317979 CGTTTTCTTGCTTCACGC
1 CGTTTTCTTGC-TCACGC
317997 CCTTTACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 11
0.73 0.00 0.28
Matches are distributed among these distances:
17 16 0.55
18 1 0.03
22 12 0.41
ACGTcount: A:0.11, C:0.30, G:0.18, T:0.42
Consensus pattern (22 bp):
CGTTTTCTTGCTCACGCGCATA
Left flanking sequence: Indices 317440 -- 317939
CAAATCGTGGCAATGATAGTTGAGAGTCGACCTCACTTAAGATCAGCTTTCGAAAGCTAATACGC
AACAAACAACGGTAGAGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGTAACGCGTTTA
AGACGAATTGCGTTTTCTTGCTGAAGCTAATACGCAACAGAAGCTAAGGAGCAACAGAAGCTTCT
ATGCTGAAAAGATAGAAAGCTAATACAACAAGCAACTCCTGAGCGCGCTAGCGCGAAAGCCTAAG
TGCAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAAGCAACGGAACAAGCA
ACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAATTGCGTTT
TCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTACTACCGCGA
AAGCCCCAGTTCGTGTTAATAGCGTTAGCCTTTACATATATAGGG
Right flanking sequence: Indices 317997 -- 318496
CCTTTACTAAATAATTGCGTTTTCTTGCTGAAGCGAATACGGCTAAGGAGCAACAGAAGCTTCTA
TGCTGAAAAGAAAAGCAGCTACAACCGGAAGCTGAAAAAACAAAAAAAGAGAGAAAGAACATACA
CCAAAGAAGCTCATAGGCAACAGAAGCTCATAGGCGACAGAAGCTCATACGCCACAGAAGCGAAT
ATACTATTGCTATGATACGCTCATAGGCCACAGAAGCTCATAGGCGACAGAACCGGCTCTACAGC
AAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATCTAAAGGATCTACT
TCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGTAGCTGGGTCACTC
GGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCTTATAGTAATAGGT
GGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTT
Found at i:318151 original size:17 final size:17
Alignment explanation
Indices: 318131--318187 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 17
318121 CATACACCAA
318131 AGAAGCTCATAGGCAAC
1 AGAAGCTCATAGGCAAC
*
318148 AGAAGCTCATAGGCGAC
1 AGAAGCTCATAGGCAAC
* *
318165 AGAAGCTCATACGCCAC
1 AGAAGCTCATAGGCAAC
318182 AGAAGC
1 AGAAGC
318188 GAATATACTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.39, C:0.26, G:0.25, T:0.11
Consensus pattern (17 bp):
AGAAGCTCATAGGCAAC
Left flanking sequence: Indices 317631 -- 318130
TTCTATGCTGAAAAGATAGAAAGCTAATACAACAAGCAACTCCTGAGCGCGCTAGCGCGAAAGCC
TAAGTGCAACAAGCAACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAAGCAACGGAACA
AGCAACGGTAGAGCGCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAATTGC
GTTTTCTTGCTGCCTAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTACTACC
GCGAAAGCCCCAGTTCGTGTTAATAGCGTTAGCCTTTACATATATAGGGCGTTTTCTTGCTCACG
CGCATACGTTTTCTTGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTC
TTGCTGAAGCGAATACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCTACAA
CCGGAAGCTGAAAAAACAAAAAAAGAGAGAAAGAACATACACCAA
Right flanking sequence: Indices 318188 -- 318687
GAATATACTATTGCTATGATACGCTCATAGGCCACAGAAGCTCATAGGCGACAGAACCGGCTCTA
CAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATCTAAAGGATC
TACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGTAGCTGGGTC
ACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCTTATAGTAAT
AGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTTGCTTTCTTTCTCCCGG
AATGCATAAAGTATCTGCTGCTAGCTTGACCGCTGCTGGTAGCCGTAATTGGGTGGCGCGCTATA
GATCGGATCCTAAGTAGCTATAGGATGAACCCTGGAAGACGGCCCTACCGGAGGAAGCGGGTAGG
GTGAATCTCCGTAACGATTCTAACGACCTAGCTAACCGTTGATTC
Found at i:318232 original size:17 final size:17
Alignment explanation
Indices: 318210--318243 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
318200 GCTATGATAC
318210 GCTCATAGGCCACAGAA
1 GCTCATAGGCCACAGAA
*
318227 GCTCATAGGCGACAGAA
1 GCTCATAGGCCACAGAA
318244 CCGGCTCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.12
Consensus pattern (17 bp):
GCTCATAGGCCACAGAA
Left flanking sequence: Indices 317710 -- 318209
AACGGGTGAGCGCTAACGCGCGAAAGCCGTATAGCAACAAGCAACGGAACAAGCAACGGTAGAGC
GCGCTAGCGCGAAAGCCTAAGTGCGTTAGTAACGCGTTTAAGACGAATTGCGTTTTCTTGCTGCC
TAGCGCGAAAGCCGTATAGCAACAAGCAACGGGTGAGCGTACTGTACTACCGCGAAAGCCCCAGT
TCGTGTTAATAGCGTTAGCCTTTACATATATAGGGCGTTTTCTTGCTCACGCGCATACGTTTTCT
TGCTGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGAAGCGAAT
ACGGCTAAGGAGCAACAGAAGCTTCTATGCTGAAAAGAAAAGCAGCTACAACCGGAAGCTGAAAA
AACAAAAAAAGAGAGAAAGAACATACACCAAAGAAGCTCATAGGCAACAGAAGCTCATAGGCGAC
AGAAGCTCATACGCCACAGAAGCGAATATACTATTGCTATGATAC
Right flanking sequence: Indices 318244 -- 318743
CCGGCTCTACAGCAAGGTCTACTCCGAAAATCAAATGGGACTGGATCACCGGGATCAATAGAATC
TAAAGGATCTACTTCTGTGTTGTATCTGGATTTGTTACAAGTAACTGATTTCGAACCGTTGATGT
AGCTGGGTCACTCGGGGTCCCAAGCCACTATTCTTGTCATTTTCATCCCCGTCCTTTGGCGGTCT
TATAGTAATAGGTGGAGCACAACTAGTTCCAGCACAAAAATAAGATCTTCGACCACTTGCTTTCT
TTCTCCCGGAATGCATAAAGTATCTGCTGCTAGCTTGACCGCTGCTGGTAGCCGTAATTGGGTGG
CGCGCTATAGATCGGATCCTAAGTAGCTATAGGATGAACCCTGGAAGACGGCCCTACCGGAGGAA
GCGGGTAGGGTGAATCTCCGTAACGATTCTAACGACCTAGCTAACCGTTGATTCAATGTCCTCTT
AATCGGGGCACCGGTTTTTTTCTTGTTTTCAACTAGGTCTTTTCC
Found at i:391292 original size:19 final size:18
Alignment explanation
Indices: 391252--391294 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
391242 AATAGAAAAT
* *
391252 AGAAGAAAAGCGCTAGAT
1 AGAAGAAAAGCGATAGAA
*
391270 AGAAGAATAGCGTATAGAA
1 AGAAGAAAAGCG-ATAGAA
391289 AGAAGA
1 AGAAGA
391295 GAAGAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.53, C:0.07, G:0.28, T:0.12
Consensus pattern (18 bp):
AGAAGAAAAGCGATAGAA
Left flanking sequence: Indices 390752 -- 391251
CAACAGCCCTTGCAGGTGAAGAGAGAAAAGTATCTCCTCCTGCCTTAAGAGTGACGGTACGGGTG
GTACTTATTCGCAAGTACCACCGCTGCCCTCAGCTATGCTCCATCATGCTTTAGCAATACGTTTT
AAGATTCTCCGTTAGGATGTTCATTCATGTTGGTTGTTGAGAGTGACGGTACGAGGTCTCCTTCA
CGGTACGGAGACGCTCTGCCCTTAGCGATTATAGTCCCGATCGCCGCCCGGAGCTACAAGGGCCA
GTCGAAATCACTGCGGGGCAAGACACGGGATGAAGTATCATAGATTGTCAACGAAAGTGTGAGAA
GTATTGTCATAATAGAGCGAATCTTAATGATAAGAGTCGCTATGACTTGGCTCTCTTTATGCTCT
TATCGTTCTCTTAGCCTGATCCTTTAACTGGAATAATCTTAAAAACAAAGTTGAATAGAACCAGA
AAGGCAATGTTCAATCTTAACAAGATTCCCATATAAATAGAAAAT
Right flanking sequence: Indices 391295 -- 391794
GAAGAAATAAAAGAGTCGTCTCATTAGAAATGGGTAATTTGTTTGAGCTTTGACATAGCATTCCG
TTCGACAAAGCGGCAGGGCCAATGTGACTGCAATAGCGCCCACTGGCATTCGTGTCGGGTCGCAG
TCCGGTATCCTTTAGCAGCTGTAAGAAAAGAATTTCTATGTCTCTGTTCTCATATGGCTAGCTAG
TTAAAAGAATAGAAGTTACTCGCCTCCATGCGAGGAAGCAGCTGACTCCTTTTCAATAGAAAGGA
ATAGCCCCAGCTGGCTGGTCAATCTCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCA
CGGTCCCGACCTTACCAGCACCTGAGGTTTACTAATCAATGAACCCCCGAACCCTACTTTCTTTT
CTGACAAAGTCATCAACCAAGCCTAACCTAACCGGTAACGACATGTTGTTGATATTGATTGAGTT
GGCGCTGACTGAATCCATCCATAAACCTAGACCCCGGTAACCTTC
Found at i:401632 original size:13 final size:13
Alignment explanation
Indices: 401591--401635 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
401581 GAAGATATGA
401591 TGAAGACGGTACT
1 TGAAGACGGTACT
*
401604 TGACCAGCATGGTACT
1 TGA--AG-ACGGTACT
401620 TGAAGACGGTACT
1 TGAAGACGGTACT
401633 TGA
1 TGA
401636 CCTGTCCCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
13 13 0.48
14 2 0.07
15 2 0.07
16 10 0.37
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (13 bp):
TGAAGACGGTACT
Left flanking sequence: Indices 401091 -- 401590
AGTCCCTGGTGCTTACTTTATTCTGATCCCAATGTTGCCTTACCAGGTTTTTTTTCTTCATGAAC
TAGGTCTTTCTAAACGGCTTGCGGGTGGTGGTCCTAGATATTCTATGTCACTAGCCCGCTTCTTT
TTTGTAGTTGAATACGGCTATCATGAAACGAAACAAATTGTAAGCCTGTGGTATCCGCTCGCACT
CTCTCTGGTCGAGAGTGCTTCTCTCATTTGTCCCCCTTATATGTTTTCAACTCAGAAGAGAAGAG
AAGAGAAGATATGATATGAGAGGATTTAAGAGAGAATAAAGCTACTTGACGGATACCAACGTATT
TCGATTCATGACCCGCCAACTTATTTGGAGACTTGAATACGGCAAGATGAGATGAGAAGAGAAGA
GAAGAAAACTAATTCAATTCAATTCAATTCAACCATCTGGTATCCGCTCGCACTCTCTCTGGTCG
AGAGTGCTTCTCTCCTTTCTGAAGACGGTTGCCTAGAAGATATGA
Right flanking sequence: Indices 401636 -- 402135
CCTGTCCCAGAAGAGCGTACTCGACCTGCTAGATTTAGCATACCGTACAGGACCTGCTGAAAAGT
ATATGATATGATATGCTATCTGTACTTTCGTGCTTCAAAGCTTTCTACACAAATGCACTACTTTT
TTAGTGAGGCGTGGGAACCCATGGCTCTATCTACTTCTGACTTTCTACCGCATAAATTGACAATT
CATGTACCCAGGTGGTTTTAGAGTACGTATAGCGTGTAGAACGGCATATTCTAGTGCTATGTTGT
AACACTATACTAGGGATTTCCATCATTTGATTTGCGAGATCAGTTGATGTGCCACTACCCAGCCA
TAAAGCGATTTCCAATAGAACCCTCAGGTAAGGTACCTGAGAAACCCACAAGTGTCTTACTCTAT
AAGGAGCACACAATTGTAGGAGTACTTTTTTTTTATTGATTGTAAGGCACTCTCCGAAAGGAAGG
TAAACAGGACGGCAGGCGCAATAGAAAGGCAGTTGGAGGCGATAG
Found at i:422283 original size:13 final size:13
Alignment explanation
Indices: 422265--422290 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
422255 AGAAGGAATC
422265 TCAAAAGCGCAAA
1 TCAAAAGCGCAAA
422278 TCAAAAGCGCAAA
1 TCAAAAGCGCAAA
422291 CATGAGTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.15, T:0.08
Consensus pattern (13 bp):
TCAAAAGCGCAAA
Left flanking sequence: Indices 421765 -- 422264
CGCCGTAGTGGAAAAGGCTTCTTCAACGAAAAGATCAGAGGCAGCCAGATGGTGTTAGAGTACCC
AACAGTTCCCATCTTTTGTGCGTTAAGCGGAAGAGTAAGCAGCATAGCATATTCATGGATGGGAT
GTCTTGGAAACGGTTTCAGAGGCTTTATGAATGCTTTCTTTTGCACCTCGGCATAGGCTAACTCA
CGGTCACTAGTATACTGTACTCCATATGCTAATGGGTCCAGGCATTTTCTAGTCCCCTCTCGTAA
AGGGAGGGGTTTCCCCAAGCTAGTTATCGCAAAGTCATCGGGGCTAGCGAAACAGACTTCTTTAG
TGGTACCGCTATTCCAACCAGACCATAGGATGGAATAGTTAAGAATGGGTATCCTTTAGAAGAGA
CGATGTGATGCCCTTACTCACAAAGGCCATTAGAACTACTATGTGGAGAGCCAAGCCATACTAAC
TGCGACGGGGGAGATCGGAGGTAAAGGAAAGGGACAGAAGGAATC
Right flanking sequence: Indices 422291 -- 422790
CATGAGTTCTTCCCTGACCTCCCCAGAGCTGAACCGAGCTGGTAGGCGGGGGTGGATACGTAGTT
AATTAGGAATAAGCAATGGTTTAATACCCTTGCATCACTATGTGAAAGAGCCATTTAAGACAAGA
TAAGTAGTCCCTAAAGGGGATCACCTATCAGTCTCACTAAAGTCAAGCTTGACTTTAAGAATGGT
TGGTCAAGATCCGAGGCTTAGATTAAGACAAAGAAGCCGCCGAACGCTGCCTCTGAGGAGATGTA
CGAATACTCATTCTCTTACCAATGTCTCTACTTCTCAAATCAATTGGAGAGGCGATTGATTGCTA
GTAGTCGCCAAATCAAGTCATTGACAGAATGGATTTCGATCTAGGCTCTAGAATAGGATTAATGA
AAAAAGAAGACCCGAGCACACGCCTGAAAGCAGCCTGACTTGAATAAAAAAATGGTTTTTTCCTC
TTTCCTCTCTGCTTTTCCTATTGCTATTGGGATCCCTTTCATATT
Found at i:443261 original size:16 final size:17
Alignment explanation
Indices: 443231--443273 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
443221 TAAATAGGGC
443231 GAATTGAATATTCATTT
1 GAATTGAATATTCATTT
443248 GAATTGAA-ATTCATTT
1 GAATTGAATATTCATTT
443264 GAATTGAATA
1 GAATTGAATA
443274 GAATAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (17 bp):
GAATTGAATATTCATTT
Left flanking sequence: Indices 442731 -- 443230
GAAACTCTAGTCCTCTTATTTCCTCTTCTTCTTTCGGTGGAGCTTCCTCTCTAGGTTCTTCTTGC
AGCCTTATCCCTTTTCCAAATTCTTCTTCCCTTAGGATCGCCTTTGGAAGCCGTAACGTAGGGGT
CATGATGATCCAGTGGGAGGGATCTTCCTCACAAAGCCAGATAGCATTAATAGCTTTAATTGTAG
TGATGGTAGGGGATGTTGGAAATCGGACACTTCCTCGGCCCAGCATGTTGAGACCGGAGCGTGAC
TAGGGGGCTGCTCTATTCTCCCATTTTTTCGTTGGGGTTCTTAGGAGCTTCCTGTTCATCCGCCA
CGTTGATTTTTCCTTCTTCTATGAAATCTTGCATTTTGTGCTTCAGCGCGGAACATTCCCCTTCC
ACCTTCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATAT
GCCGAAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGC
Right flanking sequence: Indices 443274 -- 443773
GAATAAATTAAATTAATATATATTCATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGT
GCTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCTCCTACGTTTGCAGGCTCGGCAAAAACGAG
ACTAGGGACTATGAACCCTACCATATTCCTAAATCATTATTTTTTAGAGAATGCTCCCCGCTTTT
TTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTAAAAACCACAGCACAAGCACCTACTGAG
ATGAGCCCTTTGCTTCCGGTAAGGAAAATAGTACCCCATAGTAAACGTAGAACGCGAGCGTTGAG
GCCAATGTGCCCCGGCTGGCTGGTGGCATGACTTGACTGTAATGAGTAAGAAGGGATTAAGGAAC
TACTCAAACAGCGATTCCCGTTTTTGGGCTAGTTGACTCTTAGCTTCCAGCGAGCTACGTGCATC
AGCTTTTTTTGACAAACGATTCCTCCCGTGTGAAGTATCTTCTCG
Found at i:451932 original size:20 final size:20
Alignment explanation
Indices: 451909--451949 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
451899 AATTGCCTTT
451909 CCTCGCCGTTAACTTTAAGG
1 CCTCGCCGTTAACTTTAAGG
451929 CCTCGCCGTTAACTTTAAGG
1 CCTCGCCGTTAACTTTAAGG
451949 C
1 C
451950 TATGCCATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.29
Consensus pattern (20 bp):
CCTCGCCGTTAACTTTAAGG
Left flanking sequence: Indices 451409 -- 451908
GTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGC
AAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCATAAG
CTAGTGATGCTTTCGGCTACTGGACTCTCGCCATCTAGGGTGCAGCACTCCACCGCTTCGCCTAG
CAGCACGACGCCTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGC
TCGCCGCTACTACAACATGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAG
TTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTCGAAAGGTTGACCTATTCGGG
AATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTC
GTCTCTGGGTGCCTAGGTATCCCTTTGTAAGATTTAATTGCCTTT
Right flanking sequence: Indices 451950 -- 452449
TATGCCATCCTAAGGTGCTGCTAAATGGAAGGATCTTATCAACGTCCATGAATGATAAATCATAG
ATCCAACTGCCGAATCGGAAAAATTTGGTGCTATCATATACCTTTGTATCGGCCAAGTTCACGAG
CTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACTGCCTCTCAGGCCTC
CCCGACTTATTCTACCATAGAGGCCAACGATAGACAATAACTCCCCCCCGAACACAGCTTACAAC
TTTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCCAAAATCTCAAAGGGTGCT
GAGTTGGAATCCCATTCTAAGGATTCTTGCGGTTCCGGAGAATCCAGCTACAGGAGAACCAGGAA
CGGAGAGCTTTACCCCCCTTTCCGCCCGACTCTTTGGTCTTAAGAATGCTGGTTTTAAGAATGAG
TGATTGCCCTTCTCCGACCCTTACCTTACTGCCCAACCTAAGAGC
Found at i:483068 original size:10 final size:10
Alignment explanation
Indices: 483048--483087 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
483038 GGTAAGAGCT
*
483048 AAAGTAAGCA
1 AAAGCAAGCA
*
483058 AGAGCAAGCA
1 AAAGCAAGCA
483068 AAAGCAAGCA
1 AAAGCAAGCA
*
483078 AAAGGAAGCA
1 AAAGCAAGCA
483088 GAAACAAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.57, C:0.15, G:0.25, T:0.03
Consensus pattern (10 bp):
AAAGCAAGCA
Left flanking sequence: Indices 482548 -- 483047
ATATGATCTTTCTAGGCTTAAAGAATAAGAAAAGCAGTGTCACTTGTTTAAGTCAAGCACAAGTA
ATTAAAGCAATTGGAGACCGAAAGAATTAAAGTGAAAGTAATCCCGGAACTCAATCTAAATAAGA
GTGAAAGATAAAGAGATATTGATTTTGAACAGCAATATTCATAATCGTAAAAGAGCGAAATAATC
GTAAGTGTGCAAGCGCGATCAAGCCTTTGATTTGTTGTTGCAGGGTTATTCTTTGTTGTTGCAGT
TTGGGAGGGGGCGCACTCAGTCCAGCCATGGAACTTGGGATGACATGGCTAGGACTCTTACTCTT
CCTGTGACTCTTGCTGTACAGCCAAGCTAAGCCTCGCAGCTCATCTGATGAGCGAGGACCGCCGA
CCAACGCACACTTGTCAGCTAAACTTGTTCTTGCTCTTGCTGTTCCGCCAAGCCAGTCAGCCAAG
CCAGCCAGTGAGAGAGGGCAGGTGCCCGAGTGAACGGTAAGAGCT
Right flanking sequence: Indices 483088 -- 483587
GAAACAAGTGAGCTAAATAAAAGTGAGTGTGCCAGAGGCACGTTCACCGGGAGCGAAGCGACAAA
GCGAAGCGCTTCGGTTTAAAAGAAATAAAAGTCAGTGAGCTAGTAAGTGAGAGAGGGCGGGTGCC
CGAGTGAACGGTTGTAGGAGCGCTTGCACCGCGACAAGAACTTGCTGACAAAGAAAGAAGAGAGG
GAAGCAAGCCGGTTAGGAAGGTGGATCAAAGCCGCCAAGCCAAGGCAGTGAGAGAGGGCTGAGGT
GCCCGATTGAACGGTTGTAGCGCTTGCACGCGCACGGCTTGTTCTTCGGTAACCAGTTCTTGCTC
TTGCTCTTGCTGTGGCCTTGGCCTTTGCGCTTGCGCCCTTGAGCTAATCAGATGAGTGTGGCTCT
TGTTCTTGGCTTGTTCTTAGGCTAGGACTGTTACTGTGACTCTTGCTGTACAGCGGAGTGAGTCA
ACCTTTGACGAAGCGAGGACAGGTCACCCACCTCCGGAAGGGCAT
Found at i:488700 original size:28 final size:29
Alignment explanation
Indices: 488648--488705 Score: 93
Period size: 28 Copynumber: 2.0 Consensus size: 29
488638 AGTGGCGCTG
488648 CTAGCGCTACAGCCGATTTTCTCT-CAGC
1 CTAGCGCTACAGCCGATTTTCTCTCCAGC
488676 CTAGCGCTACAGCCGA-TTTCATCTCCAGC
1 CTAGCGCTACAGCCGATTTTC-TCTCCAGC
488705 C
1 C
488706 CTTGCCCGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 4 0.14
28 19 0.68
29 5 0.18
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.26
Consensus pattern (29 bp):
CTAGCGCTACAGCCGATTTTCTCTCCAGC
Left flanking sequence: Indices 488148 -- 488647
AAGGCCCTTGACACCAGACCTGGAATATTTTAAAAAACAAAAACTCTAGAAGAAGGAATTCTTAA
ACCTCCTGCTGTAGTTTGAGTTTTAACGGTATCTTTCAAATAAGAACTTGGGGGAGCGGCTAAAG
CAATAAATATCTTAATTGAAAACTACTAAAGATTTGCCTCCCCGGTAGGTTAAGGGGTAGGAACA
ACGTGCTGCTTGTAGCGTAGGCTAATCGATCAACTATCCTCCGCTACTGGACGACTGCCCCTAAC
TTTACTGGACCAGGGCTTCCCCCAAGCTGCACTACGTTTCGTCTTCAAAAAACAACTCTCTTCCG
GCCAACTAGCTCAGGAACTCTCGCTCAGTAGCTCACTACTGTTTCCGGACTAAGGCTTTTACCGC
CTGAGACTTTGGGGGCGAGTATTTGCTTACCCGCTCCTGGCGGACAGGGAAGGGAGAGGTATGAG
AAGCATAGTCTTCTCCCTTCCGATCCTTGAACTGGAGTGGCGCTG
Right flanking sequence: Indices 488706 -- 489205
CTTGCCCGGCAGGCGCCCTCACCCTCTTTCGATACTGTGAACCTGAATGGTGGATTGAAAGAAGT
CTGGATCCTTCTGGCCCTTTTACACCTTATCTAGTCAAAGGCAGCAATGAAAGGCTTGATCTCCA
TGTTCGAATTGGGGAAGAGTGAATAGAATCATATTTCTTGACCATTATATATTTTGGAGAAAGGG
AGAGGGAATTGGCATGGAGGAATGGTATTCTGTTAATAAGAGGTGGATCCGGAGCGGAGTCGGGA
GCAAACTCCCTCACCAGGGTGAGGAGTTCTAACTCAGGGAAGAAGGGCGACTATTCCTAAGTAGC
AGAGGGTGCCTTATGTGAATAATCATAATTTGGGATGCGCTATTAAGGAACAAGTACGGGGTCTT
CCAACGCTGTTACAAGGGTGGGCGTACTCAATGAGTTCTATCAATATCCAGTTCCTTCTGTACGT
ACACCCGAAGTTGGGCCGGGTAGACATGAAGTTGAAACTACCACA
Found at i:514099 original size:7 final size:7
Alignment explanation
Indices: 514087--514115 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
514077 AGGTGCCCAT
514087 AGATGAG
1 AGATGAG
514094 AGATGAG
1 AGATGAG
514101 AGATGAG
1 AGATGAG
514108 AGATGAG
1 AGATGAG
514115 A
1 A
514116 AAGCTCTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.41, T:0.14
Consensus pattern (7 bp):
AGATGAG
Left flanking sequence: Indices 513587 -- 514086
AGACAGGTAGGATTCCGTTCCGTAGTCGAACTCGAGGTGAGACTGATCTCGTAGTCAGCTAGTGC
GCTTATCAAAGTAAATCTGTCGTGCTTGAGCGTTCATTGGGGAGGAATTTTTTATTTGTTTAACG
GATTTCCCTTCATAAACTGACTTGATTGATTTGGATATGAAATGGAATGTTTTTCTCTTTCTATT
TCATCACTGACAACTGGAACAATAAGAGCTGGTTTAGAGGCTAACTGCTATTACTATGATAATAA
CAAGGGAACCACTAGAGTAATTAGTTTGATTGGCCAACTGCACCTAAGATGACTGAGAACAAGGG
GAACTACCCGATCAAAGAGTCTTCCTTCTGCGCCTGGGCCTTCCCTTAAGATGAGAACAAGACGG
GTGAGCTTCACCTGAAATCATTTCCAGCTAAAAGCATGCGTGAACAGGAGCCCGGTTCAAAGGTT
AAGAGCTGGATGGGGATATATAAAGCCTAAAACAGAGGTGCCCAT
Right flanking sequence: Indices 514116 -- 514615
AAGCTCTCATGACTGCATCGACCCGGTCGGATAATACAGCCAGAATGCAAATATAGCCTGAAAAA
GCGTCTCGTACTACGGCTTATCGTACCCTGCCAAAGTCTCGCATGCCTAACCGTGATCCATGACT
TTCCTCCGTTAATCGTACAATATACCCTCGGGAAATCGAGTACAACAAAGTCAAGATACACAGAA
AGAAGGAACGGTTGCTTTCGGCTTGCTTGCTTCTGTTCCTTCCTTCCCCTTAGGATCAAGGGACT
GACCCGAGCCTAACGAACCGATCAATCAGCAAAGGTGGTAACTGCCTTGTGTCCAGGGAGGGGGT
GAAGAACGAATTGAGCGACAACATCTGTCACCGTCTTTGATTATGCCCCGCCACAGGGAGAAGTT
TGGTAGTTACTTTGAGGGGCAGCATTTGCCACACGCCTTTTAACCCGAGCCTTCAGCAGTAAGGG
TCTCTTTGAGCGAAGCAGTTGCTCTTGCCTCGCAAAATCGGCTAA
Found at i:524640 original size:22 final size:22
Alignment explanation
Indices: 524609--524654 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
524599 TAGGGCATGG
* *
524609 TTGAATTTCATATGAATTTGAA
1 TTGAAATTCATATGAATATGAA
*
524631 TTGAAATTCATGTGAATATGAA
1 TTGAAATTCATATGAATATGAA
524653 TT
1 TT
524655 TCATTTGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (22 bp):
TTGAAATTCATATGAATATGAA
Left flanking sequence: Indices 524109 -- 524608
CATGTGGAGCTAACATGGCTGGCTACAAGTATAGCCAAATAAAGATGAGACGGGACGGACGGTCA
GAGGCCGCTGCGGGACTACCGGAAAGCCCGCCCCCGCTAGCTAACATAGATAACTATTCCCGGAT
AGCAGTAGTCTCTATTAGAATCTCTTCCCGACCAGGCCAGGCCGAATCGGGCCACCACTTGGGAT
GGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCAGTCGCCTCCTTGAAGTGGCTT
GTCAACCACCGGGCCGTAGCTCCTCACCAAATGCCCTTCCTTGGGTTGGGGCAACACAGCACATG
AGTAGTTCGCTCCAGGGCCCCACCCCCGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCCACCT
TCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATATTAGA
AATCAAGTAGAACCTGCGCGTCCAAGTCAAATAAATAGGGCATGG
Right flanking sequence: Indices 524655 -- 525154
TCATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGTGCTAACGCAACGCCTCCACTTGCGTAGTA
GTTTGCAGGATGCCGGCCGAGATGGAGCTGGGAGCCAACCTATACTTTCCTGGGGCTTGCCTTGC
CCCAACATCTACACCAGCGGGCGCCGAAAAGGAACCAGCCCAGCCTCTTCAAGAAAGCTTTGCTT
GGTAGGCGCTGCCTACTTACTCGGACAATGCTCTAAACACTAAAGTATGCTATGCAGTTCCGCCC
CCTTCTCCCATGCTGAGTCACAGGCAGCGTCTCGGAAAGCACGGACGAGCCACATGCAGGGAAAC
TTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATT
CGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCCGTATTGGTT
ATGTTCCTCATTCCTCGTCTAGCAGAAACTAATCGAGCTCCGTCT
Found at i:546180 original size:13 final size:13
Alignment explanation
Indices: 546162--546203 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
546152 TGTTAGGTTC
*
546162 TTACTAGCGTAGA
1 TTACTAGCGTTGA
546175 TTACTAGCGTTGA
1 TTACTAGCGTTGA
546188 TTACTAGCGTTGA
1 TTACTAGCGTTGA
546201 TTA
1 TTA
546204 TCAGACTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (13 bp):
TTACTAGCGTTGA
Left flanking sequence: Indices 545662 -- 546161
GAAGAGCGATCCTTTCTAGCAACTCGACCACAGATCTCGAACCAAAACAAAAGGGTGAAGAAAAA
GGAGTGACATACTGATACGGAAAGAGAAGTCACCCGCACGGCTCCCCTTAAACGATTGCCGGGAT
AACCACACACGCAGAGGTTGGATTTCGAGCGAGACAAGTCACACACAGGTCTATCAATCCAATCC
GAAGCCACCAACACGGTATCAGGGCCAACCACTCCCTCCCTGTAAGAAGGGAGTGTCAAACCACT
CGATCTTAGGAAGAGGGTAAGATGACAGCTCTGCAAAAAAGGGCTTTCACCCATTTAACAATTTA
GTGCTTGTAACTGCTATATCCTGGGTGTCAAATCCGTCCACTGGCAGTAGTGATCTATATCCTTC
TATCTATCCCATTTTCATGGCTTAAAACAAAATAATATAGCAAGTTTCTCCTTCATCAAAATAGG
GCATTTACCTGTCCTCTCCTCTTCTTAATGGACTCTGTTAGGTTC
Right flanking sequence: Indices 546204 -- 546703
TCAGACTAGTAATCAACGCTAGTAATCGACGTAAGAATCAAAAATGAAAGAGCTTCAAGATCAAG
CACCTGAACTCTACAGCTTACCGTCCTCAGATGAACGGAGCAGTTGAAGCAGCGAACAAGAACAT
CAAAGGGGTCATAGAGAAGATGACCACCAGAATGGCATGAGATGCTGCCATATGCACGTTTGGCA
TACCGCACTTCCATCCGGACATGCACTGGGGCTACGCCGTACTCCCTTGTTGTTGGGCATGGCAT
TAGATTAGGAAGGGGCCTAAGCTAAGCCCTGAAGGAATGCTTGACTTTGACTCTTTAGGTTTAGG
AAGAGAAAAGCACTGTTTAGCTTAGTTAGCTTAGATCCTCTTTGAGATGAAATGCGGAAAAGTCC
TAATCAAAGGCGCCATCCGAGCAAAGTGGGAATACCCAGCAAGATCCGACCAACAATCGAGTTCA
TACCCGGCTCAAGGCTTTAAGAAGAAAGCCCAGGTCAAGACTAGA
Found at i:554319 original size:26 final size:27
Alignment explanation
Indices: 554290--554347 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
554280 GCTCGTTTAG
*
554290 CTAGGG-AAATGCCTTAACGTAAATTC
1 CTAGGGCAAAGGCCTTAACGTAAATTC
** *
554316 CTAGGGCCTAGGGCTTAACGTAAATTC
1 CTAGGGCAAAGGCCTTAACGTAAATTC
554343 CTAGG
1 CTAGG
554348 TTTGAGCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (27 bp):
CTAGGGCAAAGGCCTTAACGTAAATTC
Left flanking sequence: Indices 553790 -- 554289
AATACACATCTTGCGGTTCCGTCTTCCGCAAGCAGCGCGTTTAGGTTCAGTGGTCTTATACGACA
TTTGTTGGAACAAGGCCCTAGTAGAGTAATCAGACGATTCTAACCACAAACTCTAACTCTTAATT
CCTGTATTGGGTTTGCACTCATTTTCTTTATCACTTAAAGTTGATGACTAATGAAAATCCCGCGG
TTTGCAACTTCCGAAAAAGGCAAAATTGTTCATGAAAGACAAGACTTTATTCGCATCTACCCTCG
GCAGGGAATAGCCACCTGAAAGCTCATATCTGTGCTCCCTTGCACTCGGTTGAGGTAGGTTTGGT
ATTGCTTGAAAGCAGAGGTGAATAGAGGGGCCCCCTAGCGCCGATTCAAAGGGCTTAGCTGTGAC
TGCCCCATCTCGTTTTAAGTTGAGTTAGGTTTTTGCGTTAACGCCAATGTTGAGAAAGAGATGGG
GGTTGTTGCTTGCCTGAACATTAACCCAATCTTATGCTCGTTTAG
Right flanking sequence: Indices 554348 -- 554847
TTTGAGCAAAGTATAAAGTGGCAAGTTGAGTTAGGCAAAAGCAAATTCAAGTGTTTGGCCACCTT
ATGGATAAATGACTGAAAAAAGGAAAGACGCTAAATAACTAATTACTCTTTACATATTCCTGCCC
TGTCGCTTACAGTCAATCATGCTCTTTCAGTCGAAAGTTGACTTCATCCCCGGTGACCGGTCCAG
TAGGACGCTTTGGGCGGAAACTACTTTTTTATCTGTCGACTGATTGAGCAGGTATACTGTAAGCG
TAAGCGCTTATGATTCTTATTATACGACGCAATTACTGGAATACTGAAATGAATGCTTACAGTTT
ACTTAAAGCTTCACTTCAGCTGATGCGCATTCACATCAGGTTTTCAGATCTTATGCTACACTAAT
AGGTTTAGACAACAACGTGTCAGCAACAGCAAGGTTTGTTTGTTTTCTTATCTATAACTAATGAC
GAGCTTATGCGCCAACCTGAAGCTTAGCACCAGATAACCAAAGAA
Found at i:561474 original size:19 final size:19
Alignment explanation
Indices: 561450--561487 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
561440 AAGAGCTAGA
* *
561450 AACAAGCTAGGGATGAGCG
1 AACAAGCAACGGATGAGCG
561469 AACAAGCAACGGATGAGCG
1 AACAAGCAACGGATGAGCG
561488 CGCTAGCGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.34, T:0.08
Consensus pattern (19 bp):
AACAAGCAACGGATGAGCG
Left flanking sequence: Indices 560950 -- 561449
GCAGAGGGGGCCGGCGAATGCAACACTAGTAAAGCAAGCAATCTGTAGCTACAGCAAGGGAGTTT
GCTTGAAGAACTAAAGAGAGTATTGCATGCATAGGAGAGTATTGCGAAAGCGTAGGCAAAGAAGC
AATGGGAGCAGCAATCGCACACTTCTAACTTCCCATACATCCATCTAAAAACCTTTCTCGGTGAC
AGATGTTATTGATCAAGCCATCCCTGGACAAGCACGCGTCCGTACGGTATAACAGGACCTTAGCT
ATCTAGTGAAATAAAGGGCATACTTTGCTTGTTTCGTGGTATGGACCCCTGAATGGGTAAGGCAA
GCCAGTGAAGTCCTTATTACTGAGTCCAACCCTTCTACTAAGCTAAGCCAGTGATACCCTTTTCA
ACTTTGCCCATTTTGGTGCACGCACGAACGAATTCGTCAATCTGACATTATAGCTTTGCCTTTTT
TAAAGATATGCGATATAAGCAGCTAGAAAGAAGAGAAGAGCTAGA
Right flanking sequence: Indices 561488 -- 561987
CGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTACATATATAGGGCGTTTTCT
TGCTTCACGCGCATACGTTTTCTTGCTTCACGCCCTTTACTAAATAATTGCGTTTTCTTGCTGCG
TTGAACATACAGAATTTAGGCATTCCATACCCCAGCGGAAATGGTAGACTATCGATCCAAGCCGG
ATAGGGTTTACGAGACCGATAAGATAGACGAGACCAAGAAGAAGAAAAGAAAGCGCAACTATACT
AGGCGATCAATTGTATATGAGACCCCACCGCATATCAAAATGTTCAAAGGTAGCTTCTTGCAACT
GAGCAAGTCAGATGCCTATTCCTTTCTGGAGAGTTTGGCAGAGAGAACCCCAGCAATGGGACTTC
TCTAGTTTCAGAGACAGACCTACTACTCAAAAGAAAGGAGGTTTGTATTCAGTCCGGGATGATGT
CAAAGCTAGGATAGAAGCTCTCAACCGTAAGGTAGAGGATCTGGT
Found at i:563948 original size:16 final size:17
Alignment explanation
Indices: 563918--563960 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
563908 TAAATAGGGC
563918 GAATTGAATATTCATTT
1 GAATTGAATATTCATTT
563935 GAATTGAA-ATTCATTT
1 GAATTGAATATTCATTT
563951 GAATTGAATA
1 GAATTGAATA
563961 GAATAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (17 bp):
GAATTGAATATTCATTT
Left flanking sequence: Indices 563418 -- 563917
ATGCGTGGGACAGAGGGCTCGTAGTACCTGCTAGCGCAGCTTTGCAGTGGAAGGGAAGGAGCCTA
AATCGACCCCCTTCTTTCTTTTTATTCAAAGACTCAAAAGCAGTAAGAAAAGATTGGACTCTCGG
ATGAGACTAAGCAGCTACCGACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAAC
CCTATCTAAAGTGGAGCCTAGTTTAAGCTTTCATTAAAATCATAGAAAAACAAGAAAAACCACTT
GTAGGGATATGGATGGACTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAGAACAGGAGAAGAGT
ACGCGCGCTAGCGCGCTACAACTAGCAGCCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCC
ACCTTCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATAT
GCCGAAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGC
Right flanking sequence: Indices 563961 -- 564460
GAATAAATTAAATTAATATATATTCATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGT
GCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATTCAGAACTTGACTAAGCCCCGCGAAGT
AGTTTGCTGGCTAGCGCGCTAGCGCGCAACAACTAGCACTTTGAAACCGTTGCTTGCTGCATGGA
TTCTTTAGATCTAAAGAATCCATGTTTCCCCCGGAGCGAGACTCTATCCAGATCTAAAAATGGAA
GAACGAGCTAGGCGGCCGGCGGGCAAAGAAAGGGGGCGGGCGGGGCCTTGGCGAGACGTTCTTCT
TTCGAAGCGTTTTGCCAAAAGAGCGAGGGCGCCCTTCTGGGGTGGGAGCGTTTCCTTTCAAATGA
CAACTGCCTCTTCCTACTGCGGGGGCGTTGCACGAAACCAAACCGCCCCCCGCCCGATCAAGTAC
CAGTTGCTTCGCTGGTAGGCCCACTTAGGTTAGGAGGGCATTGTC
Found at i:569028 original size:16 final size:17
Alignment explanation
Indices: 568998--569040 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
568988 TAAATAGGGC
568998 GAATTGAATATTCATTT
1 GAATTGAATATTCATTT
569015 GAATTGAA-ATTCATTT
1 GAATTGAATATTCATTT
569031 GAATTGAATA
1 GAATTGAATA
569041 GAATAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (17 bp):
GAATTGAATATTCATTT
Left flanking sequence: Indices 568498 -- 568997
CCGTCACGTGCCGCGGTGAACGAACAAAACCAAAAAGAGGGCCGTCTCAGCGGAAGGAGAAGGAC
CTGCAACGGCAGAGACTACTGACCCTCTTCTTGCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGA
AGCCTGGAATCATCAATATGAGGGATCCCTCAATAAAAATAGAGAAGGGCGGGCAGGGCTTCCGC
AAGAGCCTCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCCCTATCAAGTAAAGGCATAACC
TGCCTCTTTTTTTATGTACGCACACCTTTGTTTCAGGGTGAGGCCGCCCTCCCTCCTGCTAATCC
GGCCATTTCCGAACCTGTCTTTCCCACCCCAGCTCCGAGATGAGAAGGCGGAACATTCCCCTTCC
ACCTTCGCCTTTGACTATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGATCATAT
GCCGAAATCAAGTAGAACCTTAAGTCCAAGTCAAATAAATAGGGC
Right flanking sequence: Indices 569041 -- 569540
GAATAAATTAAATTAATATATATTCATTTGAATTTGAAAAATGAAAGCTGCTTGTTAGGTGTAGT
GCTAACTTGAAGTATGCTTCTTCCCCTTTCAGTCTAATTCAGAACTTGACTAAGCCTTTTTCCCT
TAAATGACGAGGGTAGTAGTTTGCTTATGGACTTCTCCATTCTTGCGATTCCCAGCCCGACGGTA
CGGCTAAATAGGCTCAATGATCTCTTTCTTCGATAGGCCGGTCCGGCGCTCCGCGTGGTTATATT
CGTACATGTTCCGACTCGCCGGTCATTATGGATCTAGTGGCATGGCGAGGCGAAGGGGGAAAGCA
ACTACGAAGCTTCGTAGACTCGACAAGTCGCTTCGCTTATAGAATAGAATGCAAGCAAGGTAGCT
TGCTTACTCTCCTAGTAGCGTGCGTTGGCGGCAAGGAAGGAGGCATTCGGGAAGCGACTAGTCGC
TTCTGGCGAAGCTTCTGGAAGGCCGACCACTACATAGAGAGATCC
Found at i:587312 original size:34 final size:34
Alignment explanation
Indices: 587269--587343 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
587259 TAGGCGTATT
*
587269 AAAGAAGCAGGTCAAGTACCGTCTTCAAGTACAA
1 AAAGAAGCAGGTCAAGTACAGTCTTCAAGTACAA
587303 AAAGAAGCAGGTCAAGTACAGTCTTCAAGTACAA
1 AAAGAAGCAGGTCAAGTACAGTCTTCAAGTACAA
587337 AAAGAAG
1 AAAGAAG
587344 AGAAGAGGCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.16
Consensus pattern (34 bp):
AAAGAAGCAGGTCAAGTACAGTCTTCAAGTACAA
Left flanking sequence: Indices 586769 -- 587268
ACGGAGCGGTATCAGCTACTTCTTCTGCTTCTTCGGTTGTTGCCGCCTAATTAGCTACAATCAAT
GAAAATATCGTAAGAGAAGAAAGCTGTGCCACGAACAGCGCTTTGCCCTTTCTATATAAGCTGCA
CTACGCTGAATGAAAAAGATTTCCTGCTCCCATCTATTTGTTGTGGGGCATCCCATGTCTTTGCT
TGGTTAAAAACCGGTCATTTTCCTACTAGTCTTCCCTCTTTTTTAGAGCGAGAAGCGGAACTACA
CAAAAAAAAAGTGTAATCATGGACTTTCTCGTCTCTGATTACATATTCTCCTTGGGTGTACCTTT
ATCTATAGCCCTTTTAGTCGCCTTTCGAGCCGGTAAAATAGCCGGCGAGATCAATTCCCTCAATC
TCGAGGAAAAGGTAGATTGTTTGACTTTCTGCTATGCTAGAGATGGTATCCTTTGTTTGTGCAGT
ATGCTTTCGTGTAGTATGGTTTGTGATAGTTAATTTAGGCGTATT
Right flanking sequence: Indices 587344 -- 587843
AGAAGAGGCAGAACGACTCAGCAGAGGCTACGTGAGATATATATGGCAGGAGACCCCGAAGTAGA
TCTTCATCTTCTGGGAGAACCGTCAGGAAGATTCAACTATGTTGTATTATACCCCAGGAGTCAGC
CATCGCTCCCCGCTCCCACTACAGTCATACCTCCCGGAAGATCCGCCAATGCAAGGAGACCCAAT
GGTACAATTGAGTGCAGATCTGTCCGCTGTCACAATCAATGAGCCCGGAGCAAACCGGAATCTTC
ATGCCATTCGGAAGCTTCGGAGTCAGTCACCACAGCCAGAGACAGTTGAGGCATCTCCTGGCAAG
CCTTCAAGCAATTGTTGAACTGCTACCCGTGGCCACTTAGCAAAGAATATCGACAGCTTTGAAAG
AAGGCTCATGAAAGAAAGGAAGGAGAGGGTTGATAGGGGCCAGAGCATAGAGTTCGATCCTTCAC
AGCCCTCCCGGGACAGTTATATTTCAGTGACGAAAAGAGTCCGTC
Found at i:625947 original size:8 final size:7
Alignment explanation
Indices: 625909--625950 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
625899 AATCTGTTAC
625909 AAAGAAG
1 AAAGAAG
625916 AAAGAAG
1 AAAGAAG
**
625923 CTA-AAG
1 AAAGAAG
625929 AAAGAAG
1 AAAGAAG
625936 AAAGAGAG
1 AAAGA-AG
625944 AAAGAAG
1 AAAGAAG
625951 TTCGTGAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 4 0.14
7 18 0.62
8 7 0.24
ACGTcount: A:0.67, C:0.02, G:0.29, T:0.02
Consensus pattern (7 bp):
AAAGAAG
Left flanking sequence: Indices 625409 -- 625908
TTGAGCTCTCTCTAAGTACAGTAAGGGGACTCCCTTTAGTTTAGTGAATAAGAAGTGCCACCTCT
TTCGAGGAATGGGACAAATTGCTTATTAAGAAGAGTTGGAGCATATAAATCAATAGCATAGATTC
TTCCTCTCTCCCTTAGGCATTTAGCAGGGCTAAAGAGAGCGATCGGAGGGGAGTCCTAGCCATGA
TTTATCTACACAGGGGTGCTCATTCTATCTATAATCATCGCATGACAGCAAGCGTAGGTTTAGCT
TACGTATGAAAGGGGCTTGACGATCCGTAGTCCGACCCCGTTATCATGGTAGAGGAGGCCTAGCA
AACTACTGCTAAAGGCATATGAAATGAATAAGGGTGACATGCGCTGACCCCTAATCTCTATTGAG
GACCCGAGGCACCAACTTCTTCTTCCCTCTATGGATCAGAGAAGAAAGATTGAATTCAAATAGAA
TAGTACGGATTCACCACGTGGTACTAATATTGGAAAATCTGTTAC
Right flanking sequence: Indices 625951 -- 626450
TTCGTGAGTGCTTGCCAGGGACTACCTCGGATTCAGTTTATTAGTGCTTGCCAGGGTATGCGCCA
TCCCGCGGTGTCTGGCCATAACTAGAAGTCCAAACAGCGATACCATTCAAACGCTAGGAACTATG
ACGATGCTTACAATAAGGTTTAGGGCTCTGTGCCCTTGGCGTGTACTTCAGCCTTCGCGAAGTCA
CTCTCCTTAATTGCCCTAGAAGACGTGGAATCAACATCTGCCAAGCACGCATCTGGCCGACCCGG
AATCGAGTGGAAAAGTGTGCATAGACGAGGCGGTCGGGGAACTATGCTTAAAGGCAAAGTCGACT
AACGAGTCTGATAAATCAAAATCTATGTTTCTCAATCCGTAATGAGGCCAATTCTTTGTGGTTCT
TCTGAGTACGCCTAGCGTTTTCTCTCCGAGAGATGCTGTTAGTACCCATAAAAGGACGGTCCGCT
GGAGGCTCTAGACGAGGAAGGCGAGAATGATTCCAAATAGAGGAT
Found at i:661183 original size:12 final size:12
Alignment explanation
Indices: 661146--661187 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
661136 AAGAATAAGA
*
661146 GTTGCTCTTCTT
1 GTTGCTCTTGTT
661158 AGTTGC-CTTAGTT
1 -GTTGCTCTT-GTT
661171 GTTGCTCTTGTT
1 GTTGCTCTTGTT
661183 GTTGC
1 GTTGC
661188 AGTTTGGGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.05, C:0.19, G:0.24, T:0.52
Consensus pattern (12 bp):
GTTGCTCTTGTT
Left flanking sequence: Indices 660646 -- 661145
CAGGGAGGGGCTCTCTCTGAACAACCAACGAAGCAGAAGGCGGTGCGGGAAAATCCAAGCGACAG
AGCCGATTCTTAAGTACCTGACCAGTATGACCTGGTGGGTGCAGCTTGCTCTTGCGTCTATTACG
ATGCTTTAGGTCGCTTTCTTATCTAGAGCGGAACTAGCCTGAAGGAAGGGGCGCTCAACAAGCCA
TGGATAGCTAGCCTTAGCTCGCTTCTGTAACCATGCGGTGCGGGACGATGTGATGAACAATCGTT
CGAGAAGGGAAGGTCTTAGAAAGGGGCTTCGAAAACTTCTCTCTTTACCTACACCTTGAACAAAC
TATTATGCTGATATTGATCGAGTAAGGCTCCACCACCTAAGTGCAAGGAGTTAAGCCGATCGCTT
TATACAGAAGGAGGAGAACGTCCCTAGGGCGGATGGTGACACATGCCGTTGACCACCTCTACCTT
CTGTTATTCTATAATCAAATAGGCCAACGAATAGAAAGAATAAGA
Right flanking sequence: Indices 661188 -- 661687
AGTTTGGGAGGAGGGAAAAGCGAGTCTTAGAGATCAAGCCACTCGCACTTCGGATCACCGGACTA
TAGCTGAGGCCAACCATATGGAGGTAGGGCGCCGCTCACTACAGGGAAATAGGAAAACCCAGCCC
TGATTGAGGTACCGGCTGGAGGAAGTGAGTGTTCTATCGAGGGAAGAACCGTCGATCCAGGCTCT
TAGGCCCTTACGACGATCTACACCTGGCCCTTCTAGGCCTACTTACAACCTCTTGCTTGTCTTAG
GCTCACTTCTTCGCATTCCTACCCATAGAATGAGTTATAGGCTTCTGGAGCAGGGCAACGAAGGC
TGCTTCTCTTCCCCCTAAACAGGCATGTGAGAATCAAGTAAAGGCAGTCAAGTAATGCTGTCGGG
GAGCTAATTCCTCTATTTAAGTAGCTCACCCGTAGAGATATGAGACCCGTTTTCTAGCGATTATA
TTAGTGACTAAGGTAGTCGGCTCGCGAGTTCTCTTTCCTCCACGT
Found at i:664095 original size:15 final size:15
Alignment explanation
Indices: 664075--664105 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
664065 CAGCTACAAA
*
664075 GCCGAAGTCGAAGAC
1 GCCGAAGTCCAAGAC
664090 GCCGAAGTCCAAGAC
1 GCCGAAGTCCAAGAC
664105 G
1 G
664106 AAGCTTGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.32, T:0.06
Consensus pattern (15 bp):
GCCGAAGTCCAAGAC
Left flanking sequence: Indices 663575 -- 664074
TTTCGGATCCAGCAGAAGAAAGAGAAGAATGTGGTGGAAAGAGGTAGCTTGGTATTGATCCCATT
GGCTCGGCATCAGCATCAATGGCACCACTCGGGTCATATGTCCCAGGTAGAGGTGTAGGAGAAGG
AGTTGAATCGAGGTACTTACTTCCCTCTTCAGTGGATGGAGGAAGGAGAGATGGTTAGTTCGGGT
TACCGGTCAAAGGTTCAATCTCACACTTCGACTTATCGACTTATTTCAATCTCACATTTCGACTT
TAAGATAAGGTCATCCAAGCAAGCACTGATTCCGGGTTCGGTTAAATCAGCTGCAGGAAACCCCT
GACAGCAACTCATAGCTACATTAGCTCAAGCAAGAACAAGAAGCAGCCTTAGCTACAAAGACGAA
GTCAAGGACAAAGTCAAAGACACAGGCTGAAGTCGATCACCAAAGCCGGAGGCTGAGGTATATCC
TGCACTGAAGCGGAAGTCCCAACGGCCGAAGGAAGCAGCTACAAA
Right flanking sequence: Indices 664106 -- 664605
AAGCTTGCTTTGCTCAAGAAAAGAACAAGAAGCTCCACTCGTAGCTGCTAAGTAAAGAGACTCCT
GGCTTAGCCAGTCCCGTGCAAACCCCAACTCGAAGAGCAAACCGAAGGAACTAATGATATTCTTG
CCCCTATCTGAGAACATCTCGACATTGGCAGGCTTACTGAATTAAACCCTTTGCCAAGGCAACTC
CTTAAGCCAAGGACAAGGTCCGAGGGAAGCAAGCCGATTTCATTGTCATAGAAACTCCCCCTTTT
TATGTTCTTTTCGCTATAGACCAATACCTTATTTGAGTCTTATTCACTAAGCGAGTACTTAGACA
TGTACCTAAGAGGATGAGACGGCCTCAGGTCTTATTTCTTATATAAGCTAATCCATGCCCACAAA
TGAAGCAACTGTTCCCTTTGGGGAGTAAGGCTGACCCTTTTCTTTCAATCCTATTGGCCCATTTC
GAGAATAAGAGTAAGCACTCTCCTTGTCATAGTTCGTAATCGAGT
Found at i:669232 original size:19 final size:18
Alignment explanation
Indices: 669192--669234 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
669182 AATAGAAAAT
* *
669192 AGAAGAAAAGCGCTAGAT
1 AGAAGAAAAGCGATAGAA
*
669210 AGAAGAATAGCGTATAGAA
1 AGAAGAAAAGCG-ATAGAA
669229 AGAAGA
1 AGAAGA
669235 GAAGAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.53, C:0.07, G:0.28, T:0.12
Consensus pattern (18 bp):
AGAAGAAAAGCGATAGAA
Left flanking sequence: Indices 668692 -- 669191
CAACAGCCCTTGCAGGTGAAGAGAGAAAAGTATCTCCTCCTGCCTTAAGAGTGACGGTACGGGTG
GTACTTATTCGCAAGTACCACCGCTGCCCTCAGCTATGCTCCATCATGCTTTAGCAATACGTTTT
AAGATTCTCCGTTAGGATGTTCATTCATGTTGGTTGTTGAGAGTGACGGTACGAGGTCTCCTTCA
CGGTACGGAGACGCTCTGCCCTTAGCGATTATAGTCCCGATCGCCGCCCGGAGCTACAAGGGCCA
GTCGAAATCACTGCGGGGCAAGACACGGGATGAAGTATCATAGATTGTCAACGAAAGTGTGAGAA
GTATTGTCATAATAGAGCGAATCTTAATGATAAGAGTCGCTATGACTTGGCTCTCTTTATGCTCT
TATCGTTCTCTTAGCCTGATCCTTTAACTGGAATAATCTTAAAAACAAAGTTGAATAGAACCAGA
AAGGCAATGTTCAATCTTAACAAGATTCCCATATAAATAGAAAAT
Right flanking sequence: Indices 669235 -- 669734
GAAGAAATAAAAGAGTCGTCTCATTAGAAATGGGTAATTTGTTTGAGCTTTGACATAGCATTCCG
TTCGACAAAGCGGCAGGGCCAATGTGACTGCAATAGCGCCCACTGGCATTCGTGTCGGGTCGCAG
TCCGGTATCCTTTAGCAGCTGTAAGAAAAGAATTTCTATGTCTCTGTTCTCATATGGCTAGCTAG
TTAAAAGAATAGAAGTTACTCGCCTCCATGCGAGGAAGCAGCTGACTCCTTTTCAATAGAAAGGA
ATAGCCCCAGCTGGCTGGTCAATCTCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCA
CGGTCCCGACCTTACCAGCACCTGAGGTTTACTAATCAATGAACCCCCGAACCCTACTTTCTTTT
CTGACAAAGTCATCAACCAAGCCTAACCTAACCGGTAACGACATGTTGTTGATATTGATTGAGTT
GGCGCTGACTGAATCCATCCATAAACCTAGACCCCGGTAACCTTC
Found at i:684619 original size:64 final size:63
Alignment explanation
Indices: 684512--684632 Score: 197
Period size: 64 Copynumber: 1.9 Consensus size: 63
684502 TAGCGCTACC
* * *
684512 AGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTATATATATAGGGCGTTTTCTTGCTGCGCGAA
1 AGCCCCAATTCGTGTTAATAGCGTCAGCCTTTATATATATAGGGCGTTTTCTTGCTGCGCGAA
*
684575 AGCCCCAATTCGTGTTAATAGCGTGCCGCCTTTATATATATAGGGCGTTTTCTTGCTG
1 AGCCCCAATTCGTGTTAATAGCGT-CAGCCTTTATATATATAGGGCGTTTTCTTGCTG
684633 GATTGCGCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
63 22 0.42
64 31 0.58
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (63 bp):
AGCCCCAATTCGTGTTAATAGCGTCAGCCTTTATATATATAGGGCGTTTTCTTGCTGCGCGAA
Left flanking sequence: Indices 684012 -- 684511
CTTCCTGGACTTCAGGTAGTGAGACCTCTACTTCTTATTGCTGTCTTTGGTGTTGTTAGCAGTTT
ACTCGTAGCTCCAGTTGTCTAAAACCTCTTCCTCTTCCTTTAGCTTCCGAAACCCTTTCCGAAGC
TTTTAGTCGAGTTTCGTCGAGAAAGGGTGTTCTCCTGTATGAATCTGACTAGTCCTTTAGTCACT
TTAGCTTGATGGCGAAGCACGGAATACCAGCTTAAGCTCACGTTTTTCATCTGCTACTCGACTCG
CTACAACAGCTGCTAGCCCCTATTAGCTTACTAGTGAGCTAATAGGGCAAGAACAACTACCTGAC
AAGCGCACCCAGCAAGAGCAATTCGTTAGTTTAGTAAAGGGCGTTCGCTTTTGACGTTTATTAAC
GAATTGCTCTACTATAGACATTTTGGGGATTGCGGCATCTAGGGGCGCTTACTAACGAATTGGCA
ACTAATGAATCTAAACAAGCAACGGATGAGCGCGCTAGCGCTACC
Right flanking sequence: Indices 684633 -- 685132
GATTGCGCTTAAATTGCTGAAGTTAGTGCGGATGAGAAAAACGGACGCGGCAGGTTGCTAGCGGA
AGTAGCGCGTTAGCCTTTACCTCTCTTCCCTTAATGCGCCAAGGGACTCAGCAAGGTACCACTTG
CCTAACATTGCCTAACTGCTGCAAAAGGAAGAGCTACAAGCCGACCGAACTGCCTATCTCGAACG
TGGCTGACCTAGCTGCTAGAAGAGCAGCTAAAGCAGCTTCTTCAGATGCCGGGTTTTCTCTATCC
TATCTATTTGAGCGTTTTCTCTTTCACTTTTCTATTTTTTCTATAGTCAGAAAAAATTCCCTTCC
CCATTGTATGATTGCATATAAAACTAAGGCAACCTACAACCAATCTACTATTGCGATGCGACTAA
TGCTGCCAGCTAAGGCAAGAAGCGCTACCAACCCTTAGCCCAACTAGAGCTACAAGACCAGAGGA
GCTAGCTACAAGAGCTGCCCTACCTAACAGCTAACCGTTCCTCCC
Found at i:686532 original size:9 final size:9
Alignment explanation
Indices: 686518--686614 Score: 167
Period size: 9 Copynumber: 10.8 Consensus size: 9
686508 TAGTTCGATC
686518 CTTTTGATT
1 CTTTTGATT
*
686527 CTTTTGATC
1 CTTTTGATT
686536 CTTTTGATT
1 CTTTTGATT
*
686545 CTTTTGATC
1 CTTTTGATT
686554 CTTTTGATT
1 CTTTTGATT
*
686563 CTTTTGATC
1 CTTTTGATT
686572 CTTTTGATT
1 CTTTTGATT
686581 CTTTTGATT
1 CTTTTGATT
686590 CTTTTGATT
1 CTTTTGATT
686599 CTTTTGATT
1 CTTTTGATT
686608 CTTTTGA
1 CTTTTGA
686615 CTTGCTCTTT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 82 1.00
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.63
Consensus pattern (9 bp):
CTTTTGATT
Left flanking sequence: Indices 686018 -- 686517
TTTCCCGAGAGAGAAATACACCTCTACATGCTTCTCTCAGGCCAGCAGTCTTTTACTTCTAGTCG
ACTGCTCTATGACGGGCTTCCCTGTTTCCTGGGCTCTGCTCGCTCGTCTACGCTCCGACCCAGCA
AGTCATAATTGAAAAACGATGTTTCCTGATTTAAAACTTGTCGTAAAAAAGGCGGAATCAAAAAA
AATGGAAATAGTGAATCAAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATACCTA
TCTATATGGAGAGAGATCTATCTATGAATCGATCTAGACTATCCTCTATCCGGATAGATATGTCC
GAGCGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGATGAAGGTGTG
GATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGCTTTT
GGTGTTCTATGATTCACCTCCGAATAATTATTAGGTAGTTCGATC
Right flanking sequence: Indices 686615 -- 687114
CTTGCTCTTTTATTGAATAGTGCCGGAATTGCCGCGAATCCCTTGCTTCTTGGCTCCGTTCTCTA
CACATATATGTCCGGATGCGATCGGTGATTCTTTTGATTCTTCTCTTCCTAGTAAACTGATGGGG
GGATCCGGAGCAATAGGTCGAAACTATATATAAAACAGAGTTTTGAACTAGTAGTCGAAGATTTC
GGTTTTTCTCGTTTTTCTTATCGAAGAGAAGGAACGATTTGAAATGAGACAAATTTTGCTTCATT
CTGTTGTGCTCAGCGAAGGAACTGCCTAAGCATACTTTTTTTTCGGATCCAAACTTCTTTGTTCT
TTCTAAGTCTTTTTCTTGCATAGAAGAACGCAACCGTTGCAAAAACGGGGATTTTAGTAGTAGGC
GGCACCCCCTCTTAGTTTTGAGTAGGCGGAACCATTCTGTTTTGGTTCTTCTCCACATTCTTACC
TTTTTATTCAGGAATTTTCCTATGATTTTTTCAACTGATATGTCG
Found at i:686537 original size:18 final size:18
Alignment explanation
Indices: 686514--686614 Score: 184
Period size: 18 Copynumber: 5.6 Consensus size: 18
686504 TAGGTAGTTC
686514 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
686532 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
686550 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
686568 GATCCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
*
686586 GATTCTTTTGATTCTTTT
1 GATCCTTTTGATTCTTTT
*
686604 GATTCTTTTGA
1 GATCCTTTTGA
686615 CTTGCTCTTT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
18 82 1.00
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.61
Consensus pattern (18 bp):
GATCCTTTTGATTCTTTT
Left flanking sequence: Indices 686014 -- 686513
CATGTTTCCCGAGAGAGAAATACACCTCTACATGCTTCTCTCAGGCCAGCAGTCTTTTACTTCTA
GTCGACTGCTCTATGACGGGCTTCCCTGTTTCCTGGGCTCTGCTCGCTCGTCTACGCTCCGACCC
AGCAAGTCATAATTGAAAAACGATGTTTCCTGATTTAAAACTTGTCGTAAAAAAGGCGGAATCAA
AAAAAATGGAAATAGTGAATCAAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATA
CCTATCTATATGGAGAGAGATCTATCTATGAATCGATCTAGACTATCCTCTATCCGGATAGATAT
GTCCGAGCGACTACGCCGATCTTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGATGAAGG
TGTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGC
TTTTGGTGTTCTATGATTCACCTCCGAATAATTATTAGGTAGTTC
Right flanking sequence: Indices 686615 -- 687114
CTTGCTCTTTTATTGAATAGTGCCGGAATTGCCGCGAATCCCTTGCTTCTTGGCTCCGTTCTCTA
CACATATATGTCCGGATGCGATCGGTGATTCTTTTGATTCTTCTCTTCCTAGTAAACTGATGGGG
GGATCCGGAGCAATAGGTCGAAACTATATATAAAACAGAGTTTTGAACTAGTAGTCGAAGATTTC
GGTTTTTCTCGTTTTTCTTATCGAAGAGAAGGAACGATTTGAAATGAGACAAATTTTGCTTCATT
CTGTTGTGCTCAGCGAAGGAACTGCCTAAGCATACTTTTTTTTCGGATCCAAACTTCTTTGTTCT
TTCTAAGTCTTTTTCTTGCATAGAAGAACGCAACCGTTGCAAAAACGGGGATTTTAGTAGTAGGC
GGCACCCCCTCTTAGTTTTGAGTAGGCGGAACCATTCTGTTTTGGTTCTTCTCCACATTCTTACC
TTTTTATTCAGGAATTTTCCTATGATTTTTTCAACTGATATGTCG
Found at i:719586 original size:53 final size:53
Alignment explanation
Indices: 719506--719607 Score: 204
Period size: 53 Copynumber: 1.9 Consensus size: 53
719496 GAAGAAAGAA
719506 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTAGG
1 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTAGG
719559 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGC
1 GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGC
719608 GTTAGCGCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (53 bp):
GCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTAGG
Left flanking sequence: Indices 719006 -- 719505
AAATAAATTCCTCCAGACGTCATTACTAAGTAAATTGGAACTTCCTTGCTAACGTTGAGTTGGGA
GAAGCCCTTCTGCTAACTTATTGAAGTAGGCAAACCAAGCTGGCTGGAAAAGACGAGCAAGGAAA
GATTTAGGCTAACAAATATATTACTCTAAGGGCACAACTTGCCTCGAGCTTCGACGTTCCCTAAC
GCTTCAACAACAGAACAGACCTTCATTGTCAGGCACAAGCCTTCCTCTTCGTCAATGATTATGGC
TCGCTCCTGTCTTGTAGTTCGATACACTACTCTAAGGCCAGTTGCCTATACAACATCTTGACTTT
CTTTATAGTACAGTCAGCTTTGGTTATCGCTACACCCTCTCTAGACAAACGATTTGATTCAAGCC
ACTCCACTACTGGTACAGTAGCATCCTGCCTTACTAATCGTATAGGCACCCGGGAACCCTACTCA
GTAAAGAAGGGGATAGAGAGGCAGGTACGCAGAAAGAAGAAAGAA
Right flanking sequence: Indices 719608 -- 720107
GTTAGCGCTTATCCGTTGCTTGTTCCGTTGTTTGTTGCGCAACGGCTTTCGCGCTAGCGCGCTCA
TCCGTTGCTTGTTCGCTCATCCGTTGCTTGTTCCCTCCTGACCATACAACGACTAGAAACTAGAG
CTCCTTGCACACTGACTTCAATCGTATAGAGATTTCCCACTGCTTACAAGTTAGAATAGGGTCGA
TACCAGAAACTACGACTGAAACCTACCTCTCGTCCGGTGATAGCAATATAGTAAGTGATTGCCTA
CTTTATATGTCAGGAGACGCTTACTGCACTGCTTCTTCTGTCAAGGCAGGCAGGCGGTTATCAGG
ATGTAGACAAGGAGGTAGGCTTAGAGCCAGCAATAAAACTAGCAAAGACAGCTCTACCGCGAGCG
AGTAGCCTTTGCCAAAGAAGCGCTAAGAGCTTACTTGTTGCCTTGCCTGCGTTAGGAGAGGAGTG
AAGGGAGGAAAGAAGAGTTGTACCGAAGACTTTCTCTTAGCATAC
Found at i:719691 original size:19 final size:19
Alignment explanation
Indices: 719667--719705 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
719657 CGCGCTAGCG
719667 CGCTCATCCGTTGCTTGTT
1 CGCTCATCCGTTGCTTGTT
719686 CGCTCATCCGTTGCTTGTT
1 CGCTCATCCGTTGCTTGTT
719705 C
1 C
719706 CCTCCTGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.33, G:0.21, T:0.41
Consensus pattern (19 bp):
CGCTCATCCGTTGCTTGTT
Left flanking sequence: Indices 719167 -- 719666
GCACAACTTGCCTCGAGCTTCGACGTTCCCTAACGCTTCAACAACAGAACAGACCTTCATTGTCA
GGCACAAGCCTTCCTCTTCGTCAATGATTATGGCTCGCTCCTGTCTTGTAGTTCGATACACTACT
CTAAGGCCAGTTGCCTATACAACATCTTGACTTTCTTTATAGTACAGTCAGCTTTGGTTATCGCT
ACACCCTCTCTAGACAAACGATTTGATTCAAGCCACTCCACTACTGGTACAGTAGCATCCTGCCT
TACTAATCGTATAGGCACCCGGGAACCCTACTCAGTAAAGAAGGGGATAGAGAGGCAGGTACGCA
GAAAGAAGAAAGAAGCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCTA
GGGCAGCAAGAAAACGTATGTGCCGCTATTAACGAATTGGGGCTTTCGCGCGTTAGCGCTTATCC
GTTGCTTGTTCCGTTGTTTGTTGCGCAACGGCTTTCGCGCTAGCG
Right flanking sequence: Indices 719706 -- 720205
CCTCCTGACCATACAACGACTAGAAACTAGAGCTCCTTGCACACTGACTTCAATCGTATAGAGAT
TTCCCACTGCTTACAAGTTAGAATAGGGTCGATACCAGAAACTACGACTGAAACCTACCTCTCGT
CCGGTGATAGCAATATAGTAAGTGATTGCCTACTTTATATGTCAGGAGACGCTTACTGCACTGCT
TCTTCTGTCAAGGCAGGCAGGCGGTTATCAGGATGTAGACAAGGAGGTAGGCTTAGAGCCAGCAA
TAAAACTAGCAAAGACAGCTCTACCGCGAGCGAGTAGCCTTTGCCAAAGAAGCGCTAAGAGCTTA
CTTGTTGCCTTGCCTGCGTTAGGAGAGGAGTGAAGGGAGGAAAGAAGAGTTGTACCGAAGACTTT
CTCTTAGCATACAAGACAGAGTTCCCTTAGCCGTGCAGTGAGCGGTACCCCATCCACACAGTGCT
GTCTACGGATCCTTTCCCGGATTCGGGTTAGTATTAGTCTCCCTA
Found at i:734018 original size:21 final size:21
Alignment explanation
Indices: 733992--734033 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
733982 TAATATTCCG
733992 GTCGAATTAATCAAATGAAAT
1 GTCGAATTAATCAAATGAAAT
734013 GTCGAATTAATCAAATGAAAT
1 GTCGAATTAATCAAATGAAAT
734034 TTGCCTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (21 bp):
GTCGAATTAATCAAATGAAAT
Left flanking sequence: Indices 733492 -- 733991
TCGAAGCAGCTACTCTTGCTGCTGCAAAGAGTGGACCACTCCCTTAAACTAATTTCGAAACACGA
TTGTCGTTCTCTAAGTCATCGGCAAAGCTTCTAGACTTGGAGGAGTCCCACCCTCACCTGGATTC
TTATCTGGCTCTCATTAGCCTAAATCCCCAATAAAGGCTTCCCTGTCCTGTTATCAATTGACTGG
CTCAACTACTTCTCCCTCGCCATCAACAGCACAATCGCAGAGGCGGGGGCGGTCCAATCTTGAGA
CTGACGAGCAAGTGCGTTCACTTGCTGACCCTAGGGCTATAATCAAGGCAAATGGGTAAGAAAAG
GGATGAGATAATAGCGATTCAAATGACCTTCGTTCCCCTGATTAAAGGTATGAGCACCGCCTTGG
TGCTTGCACAAAGGAATCTTCGGAGATTGAGAAGACGGATTCATAAATAGCTGCCTAACTTGCGC
TCTTTAGTTGTTCGAACTGAACGGTTTCATTTTAGTAATATTCCG
Right flanking sequence: Indices 734034 -- 734533
TTGCCTCACTCGTAAGTAACTTAGTATAAAATTACGAAGAAGATTCCTCTCGTCTATCGCCAATT
TCTTTGATAGTATGGCAGTAGTCAATTAAGAGGGGACGTTTTGCTGCAGCGATTGCAGTCGCTCC
GAGAGCAGAAGATGCCGGTCGTAAAGGATGTGGTACTCGAGCTGATCCCCTGTCGTCTGAGAAGG
AACTCTCTTTTCCCAGAACTGCAATAGCTGTGACCCAGCATTGGTATGTTGGTCTGCCCTCAGTC
TGGATATCGGCGAATTGTCTCGTAGGTGGTTACTGCACTGTTGGTATCATCGGTAGGCGGTGTAG
GCAATACAAGGAAAATCATGAGCCTTGTAGTCGTAGGGGAAGTTGGGACCCACTGTTAGGTGGGC
CCTAGTGCTAGAGCATTTTCGTGCTCCTTTCACTATTGATTGATAACATATCTGATTTCATCATG
CACCTCCATTAATGCCTAAATTCCTTACTTTACAGAGCCATTCCT
Found at i:740009 original size:24 final size:24
Alignment explanation
Indices: 739977--740026 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
739967 TAGGTTCTTC
739977 ATCAAGCAAAGATCTCTTTTTCGT
1 ATCAAGCAAAGATCTCTTTTTCGT
740001 ATCAAGCAAAGATCTCTTTTTCGT
1 ATCAAGCAAAGATCTCTTTTTCGT
740025 AT
1 AT
740027 TCGGATAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (24 bp):
ATCAAGCAAAGATCTCTTTTTCGT
Left flanking sequence: Indices 739477 -- 739976
AGCTGACTTAGGAAGAATGAAACTTCCTTTGTAAGGAGAGAATAGTGCATTTTTACCAATATATA
TTCTTCTCTTAATAAAGAGTGTTTGACAGGTTCTGAAAGAGCTAAGGGCCTAAAAGACAAAAAGA
GCTTTTAGGTTCGGTCATTTAGTTAGGATCTCGCCTAGTTAGAGCGGTGAGGATCTTTACCCTTC
CTAAGTGAGACGGTTACTAGCTCGGCTTTGCGGCTTTAGGCTTTAGGACAAGACTCGTTCCCTCG
CTCTCCTCGGCTTATCATACATCCAGTTCGGGCTTGACAACGGAAATCGACAAGAATGGTAAATC
AATCTCTTTTCCAGCCATCTCCCTCGGAGTATCACCAGTGGCACCTGTAGCACCCGGTTGAAAGC
TCAAAACGGGAAATGGGGAATTGAAGCTTTAGGATCAGATTTTAGAAGTCTAATTAAGGAACAAG
CAACAGCTTTCGCGCTGCTCAAAGCAAAGATCCGTTAGGTTCTTC
Right flanking sequence: Indices 740027 -- 740526
TCGGATAGGAAAGAAAACATTAATCCACTGAGGCACTTTCCCGATTAGATCAGTTTAGACCTGAC
CTTGGGATTGGCTTGGCCTATCGGTTCCTATAGACAATTCCTAATGCCGCCCTTCTTACTAAGAA
ACTGTTACTACTCCCACTAACATTTCCAGAAACTCTAGTCCTCTTATTTCCTCCGCTTTTTTCGG
GGCAGGTGGACTTTGCACTTTATCTGAAAGCACTTTTTCTTTTCTTTCTTTATGTCTTTTTGTAG
TAAATCATAAATGATGGTTGTGCCATCATTGCCTACATGAATTTGTTTTAAAAATACATCTCCCA
TTTTGTTGTTGAAGTCCTGGACCTGTTTTAGGCTTTTCTGGTGGGTCCTAAAACTTCTATCATAC
GTATATATTAGAAAAGTTATGAGTAGTATGACTATTACTATGAGAATGAAAGTAAGGATTATGTG
GTTTTCAATCAGTGCGGCCCAGGTTGTTGTTGGAGTCGTCATGGG
Found at i:744387 original size:16 final size:17
Alignment explanation
Indices: 744364--744406 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
744354 TAATTTATTC
744364 TATTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
744381 T-TTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
744397 TATTCAATTC
1 TATTCAATTC
744407 GCCCTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTCAATTCAAATGAA
Left flanking sequence: Indices 743864 -- 744363
GTAAAGGGGAGCAAAGCCCGTTTTTTGCTCCCTTTATTGATAGATCAGGGGCCCTCCTGCCGTCG
TTTCAGTGACTCATAGGGCTTCCCTCAGCTCAGACTGGTGTCGTCACCTCTCCCAGGACCGGAAT
GATTATCCCTGCCCGATGGGTCTACATCCATCCCTGAATGTCGTCGGGTACTGTTCACTTCCCCG
CCATTCTTGTAACCGTCACCTGTAATCCGCGCAGGTGTGTCCGCACCCCCCTGAGTGGACGAGAA
AGAAAGGATTTCTCGGAGCCCCTGCTTGCTTCAAAACGTAAGGGCGCTAGCTAGCCCCTAACAGT
AAGGGGGCCAGAACAACCCAGCTTAGTAGGCGCTTAAATGTTAGTTCCGTTCCGTCAAGTGCGCC
AGGAGCAAACTACTTGAGTCTCATGTAGTGTAGGCAGCTGACTACACTACACCTAACAAGCAGCT
TTCATTTTTCAAATTCAAATGAATATATATTAATTTAATTTATTC
Right flanking sequence: Indices 744407 -- 744906
GCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTGATTTCGGCATATGATCGCCTATAAACCA
GAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCCT
TCTCATCTCGGAGCTGACTCAACTTTCCCGTATGAGCATTCGGTACATGTATCAGTCCGTGGAAG
AGTGAAAGGGTCACCACTACTGAGGATCTCCCCCCTAATCTTAGATAGGTCGTCTGAGGGTTCGC
CGCGGTTCATTGCTGTGCTTACACACTAGGCTACCCTTCTCCGAAAGCTCCGCAGGACCACCTAC
CACTAGTCTTCGGCCGGAGGGGTTTATTGCACAAAAACGCCGGGACGCAGGCTCCCGAAGAGGGA
AGCCCAACGAATGTCAGATGCAAAGCCCCGCACCTCATTAAGATCATATTGGCATACTCTCCCAA
AAAAGAAAGAGCAGACCCCATTGAAGACGGGAGTGAGGTACAACA
Found at i:752833 original size:12 final size:12
Alignment explanation
Indices: 752816--752840 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
752806 AGCGCGCTCA
752816 TCCGTTGCTTGT
1 TCCGTTGCTTGT
752828 TCCGTTGCTTGT
1 TCCGTTGCTTGT
752840 T
1 T
752841 TAGATTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.24, T:0.52
Consensus pattern (12 bp):
TCCGTTGCTTGT
Left flanking sequence: Indices 752316 -- 752815
TATTGATAGAAAGATCTTCGTCAAATACCGCTTTGTCTTTTTTTTTTTTTCTTCCTCATATCCAA
GGCAGCTTACCACAAGCACCCCACCCCATACGACTATAAGGGGGGCTGTTCGCCTTTTGAATCAA
ACAAAGTCGTAGGGGCTTCATAGCTACTTTCATTCTAAAGGAAACCGAAGAACCAACCTTTAGTC
AATAGGAGCCCTACTTCCTTCAGTCGCAAACCCAAGAAGCAAGGCCCCGCAATCCAGCAAGAAAA
CGCCCTATATATATAAAGGCTAACGCAATTAACACGAATTGGGGCTGGTAGCGCTAGCGCGCTCA
TCCGTTGCTTGTTTAGATTCATTAGTTGCCAATTCGTTAGTAAGCGCACGAAAGCTCAATGATCG
ATAAAGGCGAACGAACAAGCAACTTCGCGCTAGGCAGCAAGAAAACGCCCTATATATATAAAGGC
TAACGCAATTAACACGAACTGGGGCTGGTAGCGCTAGCGCGCTCA
Right flanking sequence: Indices 752841 -- 753340
TAGATTCATTAGTTGCTTTAAGTAGTGACTTAGATAGAATTCCATACCGTCACAGTGGAATGTAG
TCAGGGCTACGTTTGCGGGGTTGTTCTTCCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTG
ATTTCGGCATATGATCGCCTATAAACCAGAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAG
GCGAAGGTGGAAGGGGAATGTTCCGCCTTCTCATCTCGGAGCTGGGTCGCCTTTGGAAGCGTTCG
CCGGTAACCAAAGCGTCACGACATAATCAAAAGGAAGGAGTGACGCTGACTGAATCCAATCCATA
AACCCGGAAACGAAACTCAGTTCGTTCCCTTTCTTTCGTCAAGTAGGTAAAGTAGGCATACGAAC
CACTTTAGCTTTGCCTTAGACTCTATTGGAACAAAGCAAAGAAGGAAGGAGGCTGAATGAAGAAA
GGAAAGGGACAAGGGCGGTCTTGCTTGGCGCGAAGGCTGCTGGTT
Found at i:756767 original size:16 final size:17
Alignment explanation
Indices: 756744--756786 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
756734 TAATTTATTC
756744 TATTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
756761 T-TTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
756777 TATTCAATTC
1 TATTCAATTC
756787 GCCCTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTCAATTCAAATGAA
Left flanking sequence: Indices 756244 -- 756743
TGCCCGGTCATTTCGGTAGATGAAGTGAGGGGGCGTGTTAAGTTGAAAATTTCGAACAGCCTCCG
GCACTATGAAATTCATTCGTTAGAACAAGCTTAGGATGAGCGCGCTAGCGCTACCAGCCCCAATT
CGTTAATAGCGTTAGCCTTTATATATATAGGGCGTTTTCTTGCTGGTTCTTGACGTTTATTAACG
AATTGGGGAACGGAACTAATTCATCTAGGGGCGCAACTCGCAATTTCATAGTTAGCTAACGAATT
GGCGACTTGCTTGTTGGCTCGCTTCTTCAAGCTCCGCTCGCTGCTTTTCGCCTGCCTCAAAACGG
ACGCGCGCTAGCGCGCAACAACTAGCACTTTGAAGCCAGCAAACTACTTCGCGGGGCTTAGTCAA
GTTCTGAATTAGACTGAAAGGGGAAGAAGCATACTTCAAGTTAGCACTACACCTAACAAGCAGCT
TTCATTTTTCAAATTCAAATGAATATATATTAATTTAATTTATTC
Right flanking sequence: Indices 756787 -- 757286
GCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTGATTTCGGCATATGATCGCCTATAAACCA
GAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCCT
TCTCATCTCGGAGCGGGATTTTCATTAGTCCTATTTCAGGTGCAAAGTCTCTTCAATAAAGACCT
CTTTCTTTCTCCCCCATTTCACATTTTGTTGATTGAAAGAGGATAGGCGCTATCCATTGAGTAAA
GGGAGGGTTTGCTACAGTGATTCGGGCGGTTGGTGGCCCCTTCGAGAGTTGCGGGTCCTTGCCGC
TGCATGAGTGGTAGCTCACGCTCAAAACTCCTCCGACACGATAGTCGTTGCGCTGCGGTCCGTTT
CCCGGCTTCGCTTGCGCGATTTTCACTTCTGATTGGTTCCATCCATCCCGACCCGGAGGTGGGTC
AGTCAAGCGGTTCGGGTTCTCGGTCGGTTCCCGTTCGCCTGCCCT
Found at i:800013 original size:74 final size:78
Alignment explanation
Indices: 799912--800057 Score: 201
Period size: 79 Copynumber: 1.9 Consensus size: 78
799902 GAGCGCCTAG
* *
799912 CGCGAAAGCCGTAGCGCAACAAACAACGG-T-A-GAGC-ACCGCGAAAGCCGTTGTGCAACAAGC
1 CGCGAAAGCCGTAGCGCAACAAACAACGGATGACGAGCTACCGCGAAAGCCGTTGCGCAACAAAC
799973 AACGGATGAGCAC
66 AACGGATGAGCAC
* * * *
799986 CGCGAAAGCCGTTGCGCAACAAGCAACGGATGAGCGCGCTAGCGCGAAAGCCGTTGCGCAACAAA
1 CGCGAAAGCCGTAGCGCAACAAACAACGGATGA-CGAGCTACCGCGAAAGCCGTTGCGCAACAAA
800051 CAACGGA
65 CAACGGA
800058 ACAAGCAACG
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
74 27 0.44
75 1 0.02
76 1 0.02
78 3 0.05
79 29 0.48
ACGTcount: A:0.34, C:0.29, G:0.29, T:0.08
Consensus pattern (78 bp):
CGCGAAAGCCGTAGCGCAACAAACAACGGATGACGAGCTACCGCGAAAGCCGTTGCGCAACAAAC
AACGGATGAGCAC
Left flanking sequence: Indices 799412 -- 799911
TAACTGTATAGTAAGTGCTGGCTTGTAAAACCAGACTTGGTCTGCCATGGGAGAGCAGAGCAAGT
GAGTGTTGTATCCCGTAATTGTACAGCAATCAAAATTGGGCTGGTGCCCTCCCTTTACCATGTGT
TGTTGTGTGTGTTCTTTCATAGACTGCAAAACAGTGTGTGTATGCGTAGTTGAATAGCCTGACTA
GGAAGGATTTCTAGTGGCATCGCAGGGCAAAAAAAAAGTTGGGCTAAAATTGGACCCTGTGACAG
TTGGTAAAGGGCACCAGAAGATCCGGGAGATGCAAGAATTATAAAGGAATAAGAGCTAGGATTCA
ATACTCTTTTTATTATTTGATTGGAGACTATACGAGACTCTTATACTCAACGGTTTTTGAATTCA
TACGTTCTTTCTGAATATGCGTTCTATACTATATGAATAGCGTTCTATTCCATGTAAGCTCTTCT
CCTAATTCCGAACCGGTACTGAACAAGCTAGGGATGAGCGCCTAG
Right flanking sequence: Indices 800058 -- 800557
ACAAGCAACGGATGAGCGCGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTAT
ATATATAGGGCGTTTTCTTGCTGCGCGAAAGCCCCAATTCGTTAATAGCGTTAGCCTTTATATAT
ATAGGGCGTTTTCTTGCTTAGTCGAGAGTGCCGAACGTAACGGAGATAAGATAGAGCGGAACGGA
GCTAAAGCAGTCGATAAAGGCGTTGTTTCTTCTCAAGCTCTTTCTCCTTCCTTCCCAACCCTGCC
CTTTTAGCTCTTAGGTAAGTAAGCTCCTTGCTCTTTCTCCGGAAGCTAATCCACCCCAATACAAC
CTGTCTGGCCTTTCACAAATCTTTTCCTTTCTACCTATTTACTCCATGAATTAGCGTCGACCTGT
CTTTTCAGCTTCGACACCAGCGGCTACTTAAGCTGAAGCTCCTGTTCAAGGGAAGGGTTCCAAAC
CAGCCTTAGAACCAACCTTAGACCGGACCCAGAAGCAACCTGAAG
Found at i:800033 original size:42 final size:39
Alignment explanation
Indices: 799888--800057 Score: 186
Period size: 37 Copynumber: 4.3 Consensus size: 39
799878 ACCGGTACTG
* * * *
799888 AACAAGCTAGGGATGAGCGCCTAGCGCGAAAGCCGTAGCGC
1 AACAAGCAACGGATGAGCG-C-ACCGCGAAAGCCGTTGCGC
* * *
799929 AACAAACAACGG-T-AGAGCACCGCGAAAGCCGTTGTGC
1 AACAAGCAACGGATGAGCGCACCGCGAAAGCCGTTGCGC
799966 AACAAGCAACGGATGA--GCACCGCGAAAGCCGTTGCGC
1 AACAAGCAACGGATGAGCGCACCGCGAAAGCCGTTGCGC
*
800003 AACAAGCAACGGATGAGCGCGCTAGCGCGAAAGCCGTTGCGC
1 AACAAGCAACGGATGA--GCGC-ACCGCGAAAGCCGTTGCGC
*
800045 AACAAACAACGGA
1 AACAAGCAACGGA
800058 ACAAGCAACG
Statistics
Matches: 111, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
37 63 0.57
38 2 0.02
39 4 0.04
40 1 0.01
41 11 0.10
42 30 0.27
ACGTcount: A:0.34, C:0.28, G:0.30, T:0.09
Consensus pattern (39 bp):
AACAAGCAACGGATGAGCGCACCGCGAAAGCCGTTGCGC
Left flanking sequence: Indices 799388 -- 799887
TCTTCTTCTTGTATTGCAGTAGGATAACTGTATAGTAAGTGCTGGCTTGTAAAACCAGACTTGGT
CTGCCATGGGAGAGCAGAGCAAGTGAGTGTTGTATCCCGTAATTGTACAGCAATCAAAATTGGGC
TGGTGCCCTCCCTTTACCATGTGTTGTTGTGTGTGTTCTTTCATAGACTGCAAAACAGTGTGTGT
ATGCGTAGTTGAATAGCCTGACTAGGAAGGATTTCTAGTGGCATCGCAGGGCAAAAAAAAAGTTG
GGCTAAAATTGGACCCTGTGACAGTTGGTAAAGGGCACCAGAAGATCCGGGAGATGCAAGAATTA
TAAAGGAATAAGAGCTAGGATTCAATACTCTTTTTATTATTTGATTGGAGACTATACGAGACTCT
TATACTCAACGGTTTTTGAATTCATACGTTCTTTCTGAATATGCGTTCTATACTATATGAATAGC
GTTCTATTCCATGTAAGCTCTTCTCCTAATTCCGAACCGGTACTG
Right flanking sequence: Indices 800058 -- 800557
ACAAGCAACGGATGAGCGCGCTAGCGCTACCAGCCCCAGTTCGTGTTAATTGCGTTAGCCTTTAT
ATATATAGGGCGTTTTCTTGCTGCGCGAAAGCCCCAATTCGTTAATAGCGTTAGCCTTTATATAT
ATAGGGCGTTTTCTTGCTTAGTCGAGAGTGCCGAACGTAACGGAGATAAGATAGAGCGGAACGGA
GCTAAAGCAGTCGATAAAGGCGTTGTTTCTTCTCAAGCTCTTTCTCCTTCCTTCCCAACCCTGCC
CTTTTAGCTCTTAGGTAAGTAAGCTCCTTGCTCTTTCTCCGGAAGCTAATCCACCCCAATACAAC
CTGTCTGGCCTTTCACAAATCTTTTCCTTTCTACCTATTTACTCCATGAATTAGCGTCGACCTGT
CTTTTCAGCTTCGACACCAGCGGCTACTTAAGCTGAAGCTCCTGTTCAAGGGAAGGGTTCCAAAC
CAGCCTTAGAACCAACCTTAGACCGGACCCAGAAGCAACCTGAAG
Found at i:824763 original size:18 final size:18
Alignment explanation
Indices: 824740--824774 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
824730 AAGGCCCCAT
*
824740 CCTTTGACTTGTGATTGG
1 CCTTTGACTTGCGATTGG
824758 CCTTTGACTTGCGATTG
1 CCTTTGACTTGCGATTG
824775 ATTAGCTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.20, G:0.26, T:0.43
Consensus pattern (18 bp):
CCTTTGACTTGCGATTGG
Left flanking sequence: Indices 824240 -- 824739
CGGATTTCGCCCCGGCTCGTACACCGCCCTGCACTGTAGGAATAGGAAGAGAATCCCTCCCTCCA
GGGAACAGCGTCCCTAGTCCGTAAGAGTGTCTAAAACCTGCCTCCCTCCAAACTAGTCCATTAGT
GGGTCTAGCCTTCCCTCTCGCCAGTCTCGTCTCAGTCTAGAGTCTACAATCCCTGTCCCTTCGGT
TAGCAGTGAACGGAACTATTGTTGCAGGTAGGTTAGGTCCCTATCTCGTGACTTGTTATATAGGC
ACGAAACCATTCCAGCCAGCAAAGGGCTTCGCCTCTGAGTTAACGGCCTTCATCTGGCTCGTGTC
CCGCAAGGTTGAAAATCCAGCTTCTTGACCTTTTGTTCTGAAACAAAGTGATGAGTGGCGCCAGG
CCACCGCATCCCAACCATTGATAGCTACCAGAACGAACGTACATTAGCCTCCAGGCTTCTCCTCG
GCGGATTCCCCCCCTTTATAGCATGAAGGAGCAGCAAGGCCCCAT
Right flanking sequence: Indices 824775 -- 825274
ATTAGCTCTAGTATCCATCCCTCACTATGTGAGTCTCTCCTCGCCCTAACGTAGTTTCAAACAGT
TCCCAGTCAATTCTTAATGGTACATTGGAACACACCACCTGAAGCCTGTTAGAGCTAAGGGCTGG
GGAATAGTAATAGGAATTAAGACTCAATCCTTTTAGATTGCCCTTCCTTCTTGGAAGAAAGCCTT
GGTTGAGCGGTGGATCAGGGAGTGACTCGACTGTGTTGGAGAGGTAAGCGATCAAACGGAAGAGA
GCTACCCTCAAGCTAAAGACGGAACTACTCGCTCTTCTCATTCTGTTGCTTGGTCAGTTTCGGTG
TGTTACACCGGCCTTCGGACGGACTATTCACAGGCACCGAGCCTGTTTTCTTTCCTTTCCGCGCT
AGGGCCTAGGTCAGCCGAAGACTCTTATTTGTGTCTGTCGCCGGTTTTGTTTGATAGGGGAAGTC
GCTTTTCCGCAGAAGGAAGTGCAGTCGGGTGTGCCGATGCCGATA
Found at i:853247 original size:34 final size:34
Alignment explanation
Indices: 853204--853278 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
853194 TGCCTCTTCT
*
853204 CTTCTTTTTGTACTTGAAGACTGTACTTGACCTG
1 CTTCTTTTTGTACTTGAAGACGGTACTTGACCTG
853238 CTTCTTTTTGTACTTGAAGACGGTACTTGACCTG
1 CTTCTTTTTGTACTTGAAGACGGTACTTGACCTG
853272 CTTCTTT
1 CTTCTTT
853279 AATACGCCTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.45
Consensus pattern (34 bp):
CTTCTTTTTGTACTTGAAGACGGTACTTGACCTG
Left flanking sequence: Indices 852704 -- 853203
CGGACTCTTTTCGTCACTGAAATATAACTGTCCCGGGAGGGCTGTGAAGGATCGAACTCTATGCT
CTGGCCCCTATCAACCCTCTCCTTCCTTTCTTTCATGAGCCTTCTTTCAAAGCTGTCGATATTCT
TTGCTAAGTGGCCACGGTATGCAGTTCAAACAATTGCTTGAAGGCTTGCCAGGAGATGCCTCAAC
TGTCTCTGGCTGTGGTGACTGACTCCGAAGCTTCCGAATGGCATGAAGATTCCGGTTTGCTCCGG
GCTCATTGATTGTGACAGCGGACAGATCTGCACTCAATTGTACCATTGGGTCTCCTTGCATTGGC
GGATCTTCCGGGAGGTATGACTGTAGTGGGAGCGGGGAGCGATGGCTGACTCCTGGGGTATAATA
CAACATAGTTGAAATCTTCCTGACGGTTCTCCCAGAAGATGAAGATCTACTTCGGGGTCTCCTGC
CATATATATCTCACGTAGCCTCTGCTGAGTCGTTCTGCCTCTTCT
Right flanking sequence: Indices 853279 -- 853778
AATACGCCTAAATTAACTATCACAAACCATACTACACGAAAGCATACTGCACAAAACAAAGGATA
CCATCCTCTAGCATAGCAGAAAGTCAAACAATCTACCTTTTCCTCGAGATTGAGGGAATTGATCT
CGCCGGCTATTTTACCGCTCGAAAGGCGACTAAAAGGGCTATAGATAAAGGTACACCCAAGGAGA
ATAGGTACCATCAGAGACGAGAAAGTCCATGATTACACTTTTTTTTTGTGTAGTTCCGCTTCTCG
CTCTAAACAGAGGGAAGACTAGTAGGAAAATGACCGGTTTTTAACCAGAACGCACAGATCATGGG
ATGCCCCACAACAAATAGCATGGGCGCAGGAAATCTTTATTCCTTCATGCGTACGTGCCGCTTCG
TAATAGAAAGGGCAAGTCGCGCTCGTTCGTTGGCACACGCTTTCATCTCTACGCACTATTCTCAT
TAGCAATGTCAGCTAATTACGGCGGGCAACAACCGAAGACGGCGA
Found at i:853857 original size:1 final size:1
Alignment explanation
Indices: 853791--853841 Score: 84
Period size: 1 Copynumber: 51.0 Consensus size: 1
853781 AAGTAGCTGA
* *
853791 TTTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
853842 ATTATTTAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.04, C:0.00, G:0.00, T:0.96
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 853291 -- 853790
TTAACTATCACAAACCATACTACACGAAAGCATACTGCACAAAACAAAGGATACCATCCTCTAGC
ATAGCAGAAAGTCAAACAATCTACCTTTTCCTCGAGATTGAGGGAATTGATCTCGCCGGCTATTT
TACCGCTCGAAAGGCGACTAAAAGGGCTATAGATAAAGGTACACCCAAGGAGAATAGGTACCATC
AGAGACGAGAAAGTCCATGATTACACTTTTTTTTTGTGTAGTTCCGCTTCTCGCTCTAAACAGAG
GGAAGACTAGTAGGAAAATGACCGGTTTTTAACCAGAACGCACAGATCATGGGATGCCCCACAAC
AAATAGCATGGGCGCAGGAAATCTTTATTCCTTCATGCGTACGTGCCGCTTCGTAATAGAAAGGG
CAAGTCGCGCTCGTTCGTTGGCACACGCTTTCATCTCTACGCACTATTCTCATTAGCAATGTCAG
CTAATTACGGCGGGCAACAACCGAAGACGGCGAAGAAGTAGCTGA
Right flanking sequence: Indices 853842 -- 854341
ATTATTTAACATTTTTATATATTTTTATATATTATATATATATAATATATATATATATTAACGCT
CCGTGGGCTTTCTTCATTTATCTGAGTCTGCTCGAAAGGTACCTCGAGGAGATAATAAATAACTA
TCATAGAGTATGCCAAGAACCCAGTAAGCTTATTAGCTTGAACGTGTTTTCAGCTCTCACAATCC
AGCTGCTATATGACTCAGCGTAAGGAGAGATGCCGATGAGGGTCCAATAGAGGAAAAGAATGAGC
CCATATTGTTCAGAGACTTGAATCTAATATCAACCCGTATCCCAGCCATAATACGAAATAATACT
AGCTAAGGCATGTAACGCGACCGGACACCCAGGTACATACCGGTAAAAACGTCGACGCAGACAAG
AGAGCCCCCGATCTCCACTAAGCGCCCCTTTTGGAGTCAAGTATCCGTAACCGTGTGTAATAATA
GCGAGCAGTGAAAGGATTTCGGCCAGAACGGGCGCCGGGTCGAAC
Found at i:853872 original size:2 final size:2
Alignment explanation
Indices: 853857--853899 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
853847 TTAACATTTT
* *
853857 TA TA TA TT TT TA TA TA T- TA TA TA TA TA TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
853897 TA T
1 TA T
853900 TAACGCTCCG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 853357 -- 853856
TAGCAGAAAGTCAAACAATCTACCTTTTCCTCGAGATTGAGGGAATTGATCTCGCCGGCTATTTT
ACCGCTCGAAAGGCGACTAAAAGGGCTATAGATAAAGGTACACCCAAGGAGAATAGGTACCATCA
GAGACGAGAAAGTCCATGATTACACTTTTTTTTTGTGTAGTTCCGCTTCTCGCTCTAAACAGAGG
GAAGACTAGTAGGAAAATGACCGGTTTTTAACCAGAACGCACAGATCATGGGATGCCCCACAACA
AATAGCATGGGCGCAGGAAATCTTTATTCCTTCATGCGTACGTGCCGCTTCGTAATAGAAAGGGC
AAGTCGCGCTCGTTCGTTGGCACACGCTTTCATCTCTACGCACTATTCTCATTAGCAATGTCAGC
TAATTACGGCGGGCAACAACCGAAGACGGCGAAGAAGTAGCTGATTTTTTTTTTTTTTTATATTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTTAACATTTT
Right flanking sequence: Indices 853900 -- 854399
TAACGCTCCGTGGGCTTTCTTCATTTATCTGAGTCTGCTCGAAAGGTACCTCGAGGAGATAATAA
ATAACTATCATAGAGTATGCCAAGAACCCAGTAAGCTTATTAGCTTGAACGTGTTTTCAGCTCTC
ACAATCCAGCTGCTATATGACTCAGCGTAAGGAGAGATGCCGATGAGGGTCCAATAGAGGAAAAG
AATGAGCCCATATTGTTCAGAGACTTGAATCTAATATCAACCCGTATCCCAGCCATAATACGAAA
TAATACTAGCTAAGGCATGTAACGCGACCGGACACCCAGGTACATACCGGTAAAAACGTCGACGC
AGACAAGAGAGCCCCCGATCTCCACTAAGCGCCCCTTTTGGAGTCAAGTATCCGTAACCGTGTGT
AATAATAGCGAGCAGTGAAAGGATTTCGGCCAGAACGGGCGCCGGGTCGAACAACTAGGAACCGA
ACTGGACCCCAGGCGACCGAAAAACAAAGAAAAAGCCCATCGGAC
Found at i:853885 original size:13 final size:13
Alignment explanation
Indices: 853867--853901 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
853857 TATATATTTT
853867 TATATATTATATA
1 TATATATTATATA
*
853880 TATATAATATATA
1 TATATATTATATA
853893 TATATATTA
1 TATATATTA
853902 ACGCTCCGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TATATATTATATA
Left flanking sequence: Indices 853367 -- 853866
TCAAACAATCTACCTTTTCCTCGAGATTGAGGGAATTGATCTCGCCGGCTATTTTACCGCTCGAA
AGGCGACTAAAAGGGCTATAGATAAAGGTACACCCAAGGAGAATAGGTACCATCAGAGACGAGAA
AGTCCATGATTACACTTTTTTTTTGTGTAGTTCCGCTTCTCGCTCTAAACAGAGGGAAGACTAGT
AGGAAAATGACCGGTTTTTAACCAGAACGCACAGATCATGGGATGCCCCACAACAAATAGCATGG
GCGCAGGAAATCTTTATTCCTTCATGCGTACGTGCCGCTTCGTAATAGAAAGGGCAAGTCGCGCT
CGTTCGTTGGCACACGCTTTCATCTCTACGCACTATTCTCATTAGCAATGTCAGCTAATTACGGC
GGGCAACAACCGAAGACGGCGAAGAAGTAGCTGATTTTTTTTTTTTTTTATATTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTATTATTTAACATTTTTATATATTTT
Right flanking sequence: Indices 853902 -- 854401
ACGCTCCGTGGGCTTTCTTCATTTATCTGAGTCTGCTCGAAAGGTACCTCGAGGAGATAATAAAT
AACTATCATAGAGTATGCCAAGAACCCAGTAAGCTTATTAGCTTGAACGTGTTTTCAGCTCTCAC
AATCCAGCTGCTATATGACTCAGCGTAAGGAGAGATGCCGATGAGGGTCCAATAGAGGAAAAGAA
TGAGCCCATATTGTTCAGAGACTTGAATCTAATATCAACCCGTATCCCAGCCATAATACGAAATA
ATACTAGCTAAGGCATGTAACGCGACCGGACACCCAGGTACATACCGGTAAAAACGTCGACGCAG
ACAAGAGAGCCCCCGATCTCCACTAAGCGCCCCTTTTGGAGTCAAGTATCCGTAACCGTGTGTAA
TAATAGCGAGCAGTGAAAGGATTTCGGCCAGAACGGGCGCCGGGTCGAACAACTAGGAACCGAAC
TGGACCCCAGGCGACCGAAAAACAAAGAAAAAGCCCATCGGACAT
Found at i:868658 original size:16 final size:17
Alignment explanation
Indices: 868635--868677 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
868625 TAATTTATTC
868635 TATTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
868652 T-TTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
868668 TATTCAATTC
1 TATTCAATTC
868678 GCCCTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTCAATTCAAATGAA
Left flanking sequence: Indices 868135 -- 868634
GGATCTCTCTATGTAGTGGTCGGCCTTCCAGAAGCTTCGCCAGAAGCGACTAGTCGCTTCCCGAA
TGCCTCCTTCCTTGCCGCCAACGCACGCTACTAGGAGAGTAAGCAAGCTACCTTGCTTGCATTCT
ATTCTATAAGCGAAGCGACTTGTCGAGTCTACGAAGCTTCGTAGTTGCTTTCCCCCTTCGCCTCG
CCATGCCACTAGATCCATAATGACCGGCGAGTCGGAACATGTACGAATATAACCACGCGGAGCGC
CGGACCGGCCTATCGAAGAAAGAGATCATTGAGCCTATTTAGCCGTACCGTCGGGCTGGGAATCG
CAAGAATGGAGAAGTCCATAAGCAAACTACTACCCTCGTCATTTAAGGGAAAAAGGCTTAGTCAA
GTTCTGAATTAGACTGAAAGGGGAAGAAGCATACTTCAAGTTAGCACTACACCTAACAAGCAGCT
TTCATTTTTCAAATTCAAATGAATATATATTAATTTAATTTATTC
Right flanking sequence: Indices 868678 -- 869177
GCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTGATTTCGGCATATGATCGCCTATAAACCA
GAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCCT
TCTCATCTCGGAGCTGGGGTGGGAAAGACAGGTTCGGAAATGGCCGGATTAGCAGGAGGGAGGGC
GGCCTCACCCTGAAACAAAGGTGTGCGTACATAAAAAAAGAGGCAGGTTATGCCTTTACTTGATA
GGGCTCCTTCCCATCTATCTTGACCGGGAAGAGGGGGAGGCTCTTGCGGAAGCCCTGCCCGCCCT
TCTCTATTTTTATTGAGGGATCCCTCATATTGATGATTCCAGGCTTCCCGGACTCGTAACAGACG
GCTAGGAACAAGCAAGAAGAGGGTCAGTAGTCTCTGCCGTTGCAGGTCCTTCTCCTTCCGCTGAG
ACGGCCCTCTTTTTGGTTTTGTTCGTTCACCGCGGCACGTGACGG
Found at i:873738 original size:16 final size:17
Alignment explanation
Indices: 873715--873757 Score: 79
Period size: 16 Copynumber: 2.6 Consensus size: 17
873705 TAATTTATTC
873715 TATTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
873732 T-TTCAATTCAAATGAA
1 TATTCAATTCAAATGAA
873748 TATTCAATTC
1 TATTCAATTC
873758 GCCCTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.40
Consensus pattern (17 bp):
TATTCAATTCAAATGAA
Left flanking sequence: Indices 873215 -- 873714
GACAATGCCCTCCTAACCTAAGTGGGCCTACCAGCGAAGCAACTGGTACTTGATCGGGCGGGGGG
CGGTTTGGTTTCGTGCAACGCCCCCGCAGTAGGAAGAGGCAGTTGTCATTTGAAAGGAAACGCTC
CCACCCCAGAAGGGCGCCCTCGCTCTTTTGGCAAAACGCTTCGAAAGAAGAACGTCTCGCCAAGG
CCCCGCCCGCCCCCTTTCTTTGCCCGCCGGCCGCCTAGCTCGTTCTTCCATTTTTAGATCTGGAT
AGAGTCTCGCTCCGGGGGAAACATGGATTCTTTAGATCTAAAGAATCCATGCAGCAAGCAACGGT
TTCAAAGTGCTAGTTGTTGCGCGCTAGCGCGCTAGCCAGCAAACTACTTCGCGGGGCTTAGTCAA
GTTCTGAATTAGACTGAAAGGGGAAGAAGCATACTTCAAGTTAGCACTACACCTAACAAGCAGCT
TTCATTTTTCAAATTCAAATGAATATATATTAATTTAATTTATTC
Right flanking sequence: Indices 873758 -- 874257
GCCCTATTTATTTGACTTGGACTTAAGGTTCTACTTGATTTCGGCATATGATCGCCTATAAACCA
GAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCCT
TCTCATCTCGGAGCTGGCTGCTAGTTGTAGCGCGCTAGCGCGCGTACTCTTCTCCTGTTCTACGA
ATCTACAACTCTCTTTACTGAGCGAGAGTCCATCCATATCCCTACAAGTGGTTTTTCTTGTTTTT
CTATGATTTTAATGAAAGCTTAAACTAGGCTCCACTTTAGATAGGGTTTTCGGTCTTAATCAAGA
TAGGTCAGGGGCGCGTCGGAACGGTCGGTAGCTGCTTAGTCTCATCCGAGAGTCCAATCTTTTCT
TACTGCTTTTGAGTCTTTGAATAAAAAGAAAGAAGGGGGTCGATTTAGGCTCCTTCCCTTCCACT
GCAAAGCTGCGCTAGCAGGTACTACGAGCCCTCTGTCCCACGCAT
Found at i:876212 original size:19 final size:19
Alignment explanation
Indices: 876188--876225 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
876178 AGCGCTAGCG
* *
876188 CGCTCATCCGTTGCTTGTT
1 CGCTCATCCCTAGCTTGTT
876207 CGCTCATCCCTAGCTTGTT
1 CGCTCATCCCTAGCTTGTT
876226 TCTAGCTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.34, G:0.18, T:0.39
Consensus pattern (19 bp):
CGCTCATCCCTAGCTTGTT
Left flanking sequence: Indices 875688 -- 876187
ACCAGATCCTCTACCTTACGGTTGAGAGCTTCTATCCTAGCTTTGACATCATCCCGGACTGAATA
CAAACCTCCTTTCTTTTGAGTAGTAGGTCTGTCTCTGAAACTAGAGAAGTCCCATTGCTGGGGTT
CTCTCTGCCAAACTCTCCAGAAAGGAATAGGCATCTGACTTGCTCAGTTGCAAGAAGCTACCTTT
GAACATTTTGATATGCGGTGGGGTCTCATATACAATTGATCGCCTAGTATAGTTGCGCTTTCTTT
TCTTCTTCTTGGTCTCGTCTATCTTATCGGTCTCGTAAACCCTATCCGGCTTGGATCGATAGTCT
ACCATTTCCGCTGGGGTATGGAATGCCTAAATTCTGTATGTTCAACGCAGCAAGAAAACGCAATT
ATTTAGTAAAGGGCGTGAAGCAAGAAAACGTATGCGCGTGAAGCAAGAAAACGCCCTATATATGT
AAAGGCTAACGCAATTAACACGAACTGGGGCTGGTAGCGCTAGCG
Right flanking sequence: Indices 876226 -- 876725
TCTAGCTCTTCTCTTCTTTCTAGCTGCTTATATCGCATATCTTTAAAAAAGGCAAAGCTATAATG
TCAGATTGACGAATTCGTTCGTGCGTGCACCAAAATGGGCAAAGTTGAAAAGGGTATCACTGGCT
TAGCTTAGTAGAAGGGTTGGACTCAGTAATAAGGACTTCACTGGCTTGCCTTACCCATTCAGGGG
TCCATACCACGAAACAAGCAAAGTATGCCCTTTATTTCACTAGATAGCTAAGGTCCTGTTATACC
GTACGGACGCGTGCTTGTCCAGGGATGGCTTGATCAATAACATCTGTCACCGAGAAAGGTTTTTA
GATGGATGTATGGGAAGTTAGAAGTGTGCGATTGCTGCTCCCATTGCTTCTTTGCCTACGCTTTC
GCAATACTCTCCTATGCATGCAATACTCTCTTTAGTTCTTCAAGCAAACTCCCTTGCTGTAGCTA
CAGATTGCTTGCTTTACTAGTGTTGCATTCGCCGGCCCCCTCTGC
Done.