Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_066808
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 521583
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:7324 original size:47 final size:47
Alignment explanation
Indices: 7268--7362 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
7258 TCAAGGGGTG
7268 GATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATT
1 GATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATT
7315 GATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATT
1 GATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATT
7362 G
1 G
7363 GTGCCCTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.06, G:0.39, T:0.21
Consensus pattern (47 bp):
GATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATT
Left flanking sequence: Indices 6768 -- 7267
ACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTGACTATTGGACAAATTTCTCCTT
TTGTTTTCTTCTTGTTCTTTGCCATAACGCCCATTCTGGGACGAGTTGGAAGAGGAATTCCTAAT
TCTTACACGGATGAAACTGCCTGAAAAGTGAGAAATTCTGACACCCATCATTTTCGAGTGAGTAT
TACACCAAGAATTGACAAGCCTTTAGTTGTACGAGTTGTACGTTTTCTATTTCTTACGTGACTTT
GATGAAAGAAAGCATTCCGGGAACAGGAATCAGAGTGCTTTGCTTTCCTTCCTTGTCATTGTAGT
AGGCTTGTTTGCAAGAGAGAAGAAGTCAACGATGCAATCAGACCTGTGAGAGTAAGCATGAGAAG
GCAGTCTGTCTGCAATTGACTTGCCTTGTCTATAGATGTGAGAAAGCATCATGCCAGAAGACAAT
AAGCTGATGCATTCTCTGATCAAGTCAAGCACATCTCAAGGGGTG
Right flanking sequence: Indices 7363 -- 7862
GTGCCCTAAATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAA
TGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATGCTAGGATTT
GAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTATTTGAGGTTAGGCTAGGTAGCTTCCTT
TCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCATTAGCTGCTAGGAAAGAAAAGTTCTCA
ATCATAGTAGTCAATCTAAAATAAGAAATAGCTTTCATAATCTCATATCTTTAATAAGAAATAGC
TTTCATAATCTCATATCTTTCTAGTATTTCATAATCTCATATCTTTCTAGTAAGAGCTAGGAAAG
ACAAAAAACTAGCTTCAAACCCTTAGGAAAGACAAAAAACTAGCTTCAAACCCTCGCTAATGCCC
TATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCAAAAAGGC
Found at i:7408 original size:17 final size:17
Alignment explanation
Indices: 7386--7488 Score: 66
Period size: 17 Copynumber: 5.7 Consensus size: 17
7376 AGGGGAAGGC
7386 ATGAATGCTAGGTAAGT
1 ATGAATGCTAGGTAAGT
* * *
7403 ATGAATATG-AAGGGGAAGGC
1 ATG-A-ATGCTA-GGTAA-GT
7423 ATGAATGCTAGGTAAGT
1 ATGAATGCTAGGTAAGT
* * *
7440 ATGAATATG-AAGGGGAAGGC
1 ATG-A-ATGCTA-GGTAA-GT
7460 ATGAATGCTAGGTAAGT
1 ATGAATGCTAGGTAAGT
7477 ATGAATGCTAGG
1 ATGAATGCTAGG
7489 ATTTGAGGTT
Statistics
Matches: 64, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
17 20 0.31
18 18 0.28
19 18 0.28
20 8 0.12
ACGTcount: A:0.37, C:0.06, G:0.34, T:0.23
Consensus pattern (17 bp):
ATGAATGCTAGGTAAGT
Left flanking sequence: Indices 6886 -- 7385
GGAATTCCTAATTCTTACACGGATGAAACTGCCTGAAAAGTGAGAAATTCTGACACCCATCATTT
TCGAGTGAGTATTACACCAAGAATTGACAAGCCTTTAGTTGTACGAGTTGTACGTTTTCTATTTC
TTACGTGACTTTGATGAAAGAAAGCATTCCGGGAACAGGAATCAGAGTGCTTTGCTTTCCTTCCT
TGTCATTGTAGTAGGCTTGTTTGCAAGAGAGAAGAAGTCAACGATGCAATCAGACCTGTGAGAGT
AAGCATGAGAAGGCAGTCTGTCTGCAATTGACTTGCCTTGTCTATAGATGTGAGAAAGCATCATG
CCAGAAGACAATAAGCTGATGCATTCTCTGATCAAGTCAAGCACATCTCAAGGGGTGGATATAAG
ATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGATATAAGATAGTATAGCAAGGGGTG
AAGTCGGGAGAAGTCGGGATTGGTGCCCTAAATGAAGGGGAAGGC
Right flanking sequence: Indices 7489 -- 7988
ATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTATTTGAGGTTAGGCTAGGTAGCTT
CCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCATTAGCTGCTAGGAAAGAAAAGTT
CTCAATCATAGTAGTCAATCTAAAATAAGAAATAGCTTTCATAATCTCATATCTTTAATAAGAAA
TAGCTTTCATAATCTCATATCTTTCTAGTATTTCATAATCTCATATCTTTCTAGTAAGAGCTAGG
AAAGACAAAAAACTAGCTTCAAACCCTTAGGAAAGACAAAAAACTAGCTTCAAACCCTCGCTAAT
GCCCTATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCAAAAAGGCTAAATAATAGGTCTAT
AGGCAAAGGGAAAGGGGTGCTTGAAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTAAA
GGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTCGGCTAACCA
Found at i:7422 original size:37 final size:37
Alignment explanation
Indices: 7372--7482 Score: 222
Period size: 37 Copynumber: 3.0 Consensus size: 37
7362 GGTGCCCTAA
7372 ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
1 ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
7409 ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
1 ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
7446 ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
1 ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
7483 GCTAGGATTT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.38, C:0.05, G:0.35, T:0.22
Consensus pattern (37 bp):
ATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAAT
Left flanking sequence: Indices 6872 -- 7371
GACGAGTTGGAAGAGGAATTCCTAATTCTTACACGGATGAAACTGCCTGAAAAGTGAGAAATTCT
GACACCCATCATTTTCGAGTGAGTATTACACCAAGAATTGACAAGCCTTTAGTTGTACGAGTTGT
ACGTTTTCTATTTCTTACGTGACTTTGATGAAAGAAAGCATTCCGGGAACAGGAATCAGAGTGCT
TTGCTTTCCTTCCTTGTCATTGTAGTAGGCTTGTTTGCAAGAGAGAAGAAGTCAACGATGCAATC
AGACCTGTGAGAGTAAGCATGAGAAGGCAGTCTGTCTGCAATTGACTTGCCTTGTCTATAGATGT
GAGAAAGCATCATGCCAGAAGACAATAAGCTGATGCATTCTCTGATCAAGTCAAGCACATCTCAA
GGGGTGGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGATATAAGATAG
TATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGGTGCCCTAA
Right flanking sequence: Indices 7483 -- 7982
GCTAGGATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTATTTGAGGTTAGGCTAGG
TAGCTTCCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCATTAGCTGCTAGGAAAGA
AAAGTTCTCAATCATAGTAGTCAATCTAAAATAAGAAATAGCTTTCATAATCTCATATCTTTAAT
AAGAAATAGCTTTCATAATCTCATATCTTTCTAGTATTTCATAATCTCATATCTTTCTAGTAAGA
GCTAGGAAAGACAAAAAACTAGCTTCAAACCCTTAGGAAAGACAAAAAACTAGCTTCAAACCCTC
GCTAATGCCCTATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCAAAAAGGCTAAATAATAG
GTCTATAGGCAAAGGGAAAGGGGTGCTTGAAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATC
AGTAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTCGGC
Found at i:7428 original size:20 final size:20
Alignment explanation
Indices: 7403--7465 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
7393 CTAGGTAAGT
7403 ATGAATATGAAGGGGAAGGC
1 ATGAATATGAAGGGGAAGGC
* * *
7423 ATG-A-ATGCTA-GGTAA-GT
1 ATGAATATG-AAGGGGAAGGC
7440 ATGAATATGAAGGGGAAGGC
1 ATGAATATGAAGGGGAAGGC
7460 ATGAAT
1 ATGAAT
7466 GCTAGGTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
17 4 0.12
18 9 0.28
19 9 0.28
20 10 0.31
ACGTcount: A:0.40, C:0.05, G:0.35, T:0.21
Consensus pattern (20 bp):
ATGAATATGAAGGGGAAGGC
Left flanking sequence: Indices 6903 -- 7402
CACGGATGAAACTGCCTGAAAAGTGAGAAATTCTGACACCCATCATTTTCGAGTGAGTATTACAC
CAAGAATTGACAAGCCTTTAGTTGTACGAGTTGTACGTTTTCTATTTCTTACGTGACTTTGATGA
AAGAAAGCATTCCGGGAACAGGAATCAGAGTGCTTTGCTTTCCTTCCTTGTCATTGTAGTAGGCT
TGTTTGCAAGAGAGAAGAAGTCAACGATGCAATCAGACCTGTGAGAGTAAGCATGAGAAGGCAGT
CTGTCTGCAATTGACTTGCCTTGTCTATAGATGTGAGAAAGCATCATGCCAGAAGACAATAAGCT
GATGCATTCTCTGATCAAGTCAAGCACATCTCAAGGGGTGGATATAAGATAGTATAGCAAGGGGT
GAAGTCGGGAGAAGTCGGGATTGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGG
GATTGGTGCCCTAAATGAAGGGGAAGGCATGAATGCTAGGTAAGT
Right flanking sequence: Indices 7466 -- 7965
GCTAGGTAAGTATGAATGCTAGGATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTA
TTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCA
TTAGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTCAATCTAAAATAAGAAATAGCTTTCAT
AATCTCATATCTTTAATAAGAAATAGCTTTCATAATCTCATATCTTTCTAGTATTTCATAATCTC
ATATCTTTCTAGTAAGAGCTAGGAAAGACAAAAAACTAGCTTCAAACCCTTAGGAAAGACAAAAA
ACTAGCTTCAAACCCTCGCTAATGCCCTATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCA
AAAAGGCTAAATAATAGGTCTATAGGCAAAGGGAAAGGGGTGCTTGAAAAGGCTTTCCTGCCTGG
CAAAGTACAGGGCTATCAGTAAAGGCTTTCCTGCCTGGCAAAGTA
Found at i:7546 original size:41 final size:41
Alignment explanation
Indices: 7489--7571 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
7479 GAATGCTAGG
7489 ATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATT
1 ATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATT
7530 ATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATT
1 ATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATT
7571 A
1 A
7572 ACTGCTAGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.43
Consensus pattern (41 bp):
ATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATT
Left flanking sequence: Indices 6989 -- 7488
TTGTACGAGTTGTACGTTTTCTATTTCTTACGTGACTTTGATGAAAGAAAGCATTCCGGGAACAG
GAATCAGAGTGCTTTGCTTTCCTTCCTTGTCATTGTAGTAGGCTTGTTTGCAAGAGAGAAGAAGT
CAACGATGCAATCAGACCTGTGAGAGTAAGCATGAGAAGGCAGTCTGTCTGCAATTGACTTGCCT
TGTCTATAGATGTGAGAAAGCATCATGCCAGAAGACAATAAGCTGATGCATTCTCTGATCAAGTC
AAGCACATCTCAAGGGGTGGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGAT
TGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGGTGCCCTAAATGAAGG
GGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGA
ATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATGCTAGG
Right flanking sequence: Indices 7572 -- 8071
ACTGCTAGGAAAGAGAAAATAGCATTAGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTCAA
TCTAAAATAAGAAATAGCTTTCATAATCTCATATCTTTAATAAGAAATAGCTTTCATAATCTCAT
ATCTTTCTAGTATTTCATAATCTCATATCTTTCTAGTAAGAGCTAGGAAAGACAAAAAACTAGCT
TCAAACCCTTAGGAAAGACAAAAAACTAGCTTCAAACCCTCGCTAATGCCCTATTGAATAGGTTG
AGTTATAGGGAGATTGACCTTGCAAAAAGGCTAAATAATAGGTCTATAGGCAAAGGGAAAGGGGT
GCTTGAAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTAAAGGCTTTCCTGCCTGGCAA
AGTACAGGGCTATCAGTCGGCTAACCACCCTAGCTAGCATTTTCTATAAGATAGGGCGTTCATCA
AGCCTTCTTTAAGTCGGAGTGTAGCGAAGTGATTCCCCAAAGAGT
Found at i:7679 original size:17 final size:17
Alignment explanation
Indices: 7654--7708 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
7644 TAAGAAATAG
7654 CTTTCATAATCTCATAT
1 CTTTCATAATCTCATAT
* *** *
7671 CTTTAATAA-GAAATAG
1 CTTTCATAATCTCATAT
7687 CTTTCATAATCTCATAT
1 CTTTCATAATCTCATAT
7704 CTTTC
1 CTTTC
7709 TAGTATTTCA
Statistics
Matches: 27, Mismatches: 10, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.44
Consensus pattern (17 bp):
CTTTCATAATCTCATAT
Left flanking sequence: Indices 7154 -- 7653
GAAGGCAGTCTGTCTGCAATTGACTTGCCTTGTCTATAGATGTGAGAAAGCATCATGCCAGAAGA
CAATAAGCTGATGCATTCTCTGATCAAGTCAAGCACATCTCAAGGGGTGGATATAAGATAGTATA
GCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGATATAAGATAGTATAGCAAGGGGTGAAGTCGGG
AGAAGTCGGGATTGGTGCCCTAAATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAA
GGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTAT
GAATGCTAGGATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTATTTGAGGTTAGGC
TAGGTAGCTTCCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCATTAGCTGCTAGGA
AAGAAAAGTTCTCAATCATAGTAGTCAATCTAAAATAAGAAATAG
Right flanking sequence: Indices 7709 -- 8208
TAGTATTTCATAATCTCATATCTTTCTAGTAAGAGCTAGGAAAGACAAAAAACTAGCTTCAAACC
CTTAGGAAAGACAAAAAACTAGCTTCAAACCCTCGCTAATGCCCTATTGAATAGGTTGAGTTATA
GGGAGATTGACCTTGCAAAAAGGCTAAATAATAGGTCTATAGGCAAAGGGAAAGGGGTGCTTGAA
AAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTAAAGGCTTTCCTGCCTGGCAAAGTACAG
GGCTATCAGTCGGCTAACCACCCTAGCTAGCATTTTCTATAAGATAGGGCGTTCATCAAGCCTTC
TTTAAGTCGGAGTGTAGCGAAGTGATTCCCCAAAGAGTGAAAGTGGAACAAGACGGGATAGTTGC
CTGCATCTCCTTAACAGTAGAGAGAGCTATTTCTCACCAGTGAGGGCTGAAGAACGAGTGACTCT
TGTTTTCGGGTCTATGCCCATTGCCGATCATGTGGTCAGTTTCCC
Found at i:7679 original size:33 final size:33
Alignment explanation
Indices: 7642--7707 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
7632 GTCAATCTAA
7642 AATAAGAAATAGCTTTCATAATCTCATATCTTT
1 AATAAGAAATAGCTTTCATAATCTCATATCTTT
7675 AATAAGAAATAGCTTTCATAATCTCATATCTTT
1 AATAAGAAATAGCTTTCATAATCTCATATCTTT
7708 CTAGTATTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.39
Consensus pattern (33 bp):
AATAAGAAATAGCTTTCATAATCTCATATCTTT
Left flanking sequence: Indices 7142 -- 7641
GAGTAAGCATGAGAAGGCAGTCTGTCTGCAATTGACTTGCCTTGTCTATAGATGTGAGAAAGCAT
CATGCCAGAAGACAATAAGCTGATGCATTCTCTGATCAAGTCAAGCACATCTCAAGGGGTGGATA
TAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGATATAAGATAGTATAGCAAGG
GGTGAAGTCGGGAGAAGTCGGGATTGGTGCCCTAAATGAAGGGGAAGGCATGAATGCTAGGTAAG
TATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATG
CTAGGTAAGTATGAATGCTAGGATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTAT
TTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCAT
TAGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTCAATCTAA
Right flanking sequence: Indices 7708 -- 8207
CTAGTATTTCATAATCTCATATCTTTCTAGTAAGAGCTAGGAAAGACAAAAAACTAGCTTCAAAC
CCTTAGGAAAGACAAAAAACTAGCTTCAAACCCTCGCTAATGCCCTATTGAATAGGTTGAGTTAT
AGGGAGATTGACCTTGCAAAAAGGCTAAATAATAGGTCTATAGGCAAAGGGAAAGGGGTGCTTGA
AAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTAAAGGCTTTCCTGCCTGGCAAAGTACA
GGGCTATCAGTCGGCTAACCACCCTAGCTAGCATTTTCTATAAGATAGGGCGTTCATCAAGCCTT
CTTTAAGTCGGAGTGTAGCGAAGTGATTCCCCAAAGAGTGAAAGTGGAACAAGACGGGATAGTTG
CCTGCATCTCCTTAACAGTAGAGAGAGCTATTTCTCACCAGTGAGGGCTGAAGAACGAGTGACTC
TTGTTTTCGGGTCTATGCCCATTGCCGATCATGTGGTCAGTTTCC
Found at i:7695 original size:16 final size:16
Alignment explanation
Indices: 7643--7695 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
7633 TCAATCTAAA
7643 ATAAGAAATAGCTTTC
1 ATAAGAAATAGCTTTC
*** * *
7659 ATAATCTCATATCTTTA
1 ATAA-GAAATAGCTTTC
7676 ATAAGAAATAGCTTTC
1 ATAAGAAATAGCTTTC
7692 ATAA
1 ATAA
7696 TCTCATATCT
Statistics
Matches: 26, Mismatches: 10, Indels: 2
0.68 0.26 0.05
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (16 bp):
ATAAGAAATAGCTTTC
Left flanking sequence: Indices 7143 -- 7642
AGTAAGCATGAGAAGGCAGTCTGTCTGCAATTGACTTGCCTTGTCTATAGATGTGAGAAAGCATC
ATGCCAGAAGACAATAAGCTGATGCATTCTCTGATCAAGTCAAGCACATCTCAAGGGGTGGATAT
AAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGATATAAGATAGTATAGCAAGGG
GTGAAGTCGGGAGAAGTCGGGATTGGTGCCCTAAATGAAGGGGAAGGCATGAATGCTAGGTAAGT
ATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGC
TAGGTAAGTATGAATGCTAGGATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTATT
TGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCATT
AGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTCAATCTAAA
Right flanking sequence: Indices 7696 -- 8195
TCTCATATCTTTCTAGTATTTCATAATCTCATATCTTTCTAGTAAGAGCTAGGAAAGACAAAAAA
CTAGCTTCAAACCCTTAGGAAAGACAAAAAACTAGCTTCAAACCCTCGCTAATGCCCTATTGAAT
AGGTTGAGTTATAGGGAGATTGACCTTGCAAAAAGGCTAAATAATAGGTCTATAGGCAAAGGGAA
AGGGGTGCTTGAAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTAAAGGCTTTCCTGCC
TGGCAAAGTACAGGGCTATCAGTCGGCTAACCACCCTAGCTAGCATTTTCTATAAGATAGGGCGT
TCATCAAGCCTTCTTTAAGTCGGAGTGTAGCGAAGTGATTCCCCAAAGAGTGAAAGTGGAACAAG
ACGGGATAGTTGCCTGCATCTCCTTAACAGTAGAGAGAGCTATTTCTCACCAGTGAGGGCTGAAG
AACGAGTGACTCTTGTTTTCGGGTCTATGCCCATTGCCGATCATG
Found at i:7717 original size:26 final size:26
Alignment explanation
Indices: 7688--7739 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7678 AAGAAATAGC
7688 TTTCATAATCTCATATCTTTCTAGTA
1 TTTCATAATCTCATATCTTTCTAGTA
7714 TTTCATAATCTCATATCTTTCTAGTA
1 TTTCATAATCTCATATCTTTCTAGTA
7740 AGAGCTAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.04, T:0.50
Consensus pattern (26 bp):
TTTCATAATCTCATATCTTTCTAGTA
Left flanking sequence: Indices 7188 -- 7687
TATAGATGTGAGAAAGCATCATGCCAGAAGACAATAAGCTGATGCATTCTCTGATCAAGTCAAGC
ACATCTCAAGGGGTGGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGAT
ATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGGTGCCCTAAATGAAGGGGAA
GGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATAT
GAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATGCTAGGATTTGAGGTTAGGCTAGGTAGCTT
CCTTTCTTTATAGCATTATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTAACTGCT
AGGAAAGAGAAAATAGCATTAGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTCAATCTAAA
ATAAGAAATAGCTTTCATAATCTCATATCTTTAATAAGAAATAGC
Right flanking sequence: Indices 7740 -- 8239
AGAGCTAGGAAAGACAAAAAACTAGCTTCAAACCCTTAGGAAAGACAAAAAACTAGCTTCAAACC
CTCGCTAATGCCCTATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCAAAAAGGCTAAATAA
TAGGTCTATAGGCAAAGGGAAAGGGGTGCTTGAAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCT
ATCAGTAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTCGGCTAACCACCCTAGCTAGC
ATTTTCTATAAGATAGGGCGTTCATCAAGCCTTCTTTAAGTCGGAGTGTAGCGAAGTGATTCCCC
AAAGAGTGAAAGTGGAACAAGACGGGATAGTTGCCTGCATCTCCTTAACAGTAGAGAGAGCTATT
TCTCACCAGTGAGGGCTGAAGAACGAGTGACTCTTGTTTTCGGGTCTATGCCCATTGCCGATCAT
GTGGTCAGTTTCCCCGTGGAAAGCGAGGGAGCTGTTGATGGAAGA
Found at i:7780 original size:31 final size:31
Alignment explanation
Indices: 7745--7806 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7735 TAGTAAGAGC
7745 TAGGAAAGACAAAAAACTAGCTTCAAACCCT
1 TAGGAAAGACAAAAAACTAGCTTCAAACCCT
7776 TAGGAAAGACAAAAAACTAGCTTCAAACCCT
1 TAGGAAAGACAAAAAACTAGCTTCAAACCCT
7807 CGCTAATGCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.16
Consensus pattern (31 bp):
TAGGAAAGACAAAAAACTAGCTTCAAACCCT
Left flanking sequence: Indices 7245 -- 7744
AGTCAAGCACATCTCAAGGGGTGGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCG
GGATTGATATAAGATAGTATAGCAAGGGGTGAAGTCGGGAGAAGTCGGGATTGGTGCCCTAAATG
AAGGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGT
ATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATGCTAGGATTTGAGGTTAGGCTA
GGTAGCTTCCTTTCTTTATAGCATTATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCAT
TAACTGCTAGGAAAGAGAAAATAGCATTAGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTC
AATCTAAAATAAGAAATAGCTTTCATAATCTCATATCTTTAATAAGAAATAGCTTTCATAATCTC
ATATCTTTCTAGTATTTCATAATCTCATATCTTTCTAGTAAGAGC
Right flanking sequence: Indices 7807 -- 8306
CGCTAATGCCCTATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCAAAAAGGCTAAATAATA
GGTCTATAGGCAAAGGGAAAGGGGTGCTTGAAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTAT
CAGTAAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGTCGGCTAACCACCCTAGCTAGCAT
TTTCTATAAGATAGGGCGTTCATCAAGCCTTCTTTAAGTCGGAGTGTAGCGAAGTGATTCCCCAA
AGAGTGAAAGTGGAACAAGACGGGATAGTTGCCTGCATCTCCTTAACAGTAGAGAGAGCTATTTC
TCACCAGTGAGGGCTGAAGAACGAGTGACTCTTGTTTTCGGGTCTATGCCCATTGCCGATCATGT
GGTCAGTTTCCCCGTGGAAAGCGAGGGAGCTGTTGATGGAAGAGGAATCACCGGGTTGTTCGGTT
CAATGGTTGGGAAGCTAAGCTCCTTAGAAAGGATTGACCGACAAG
Found at i:7947 original size:38 final size:38
Alignment explanation
Indices: 7903--7978 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
7893 GGGTGCTTGA
7903 AAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGT
1 AAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGT
7941 AAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGT
1 AAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGT
7979 CGGCTAACCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (38 bp):
AAAGGCTTTCCTGCCTGGCAAAGTACAGGGCTATCAGT
Left flanking sequence: Indices 7403 -- 7902
ATGAATATGAAGGGGAAGGCATGAATGCTAGGTAAGTATGAATATGAAGGGGAAGGCATGAATGC
TAGGTAAGTATGAATGCTAGGATTTGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTATT
TGAGGTTAGGCTAGGTAGCTTCCTTTCTTTATAGCATTAACTGCTAGGAAAGAGAAAATAGCATT
AGCTGCTAGGAAAGAAAAGTTCTCAATCATAGTAGTCAATCTAAAATAAGAAATAGCTTTCATAA
TCTCATATCTTTAATAAGAAATAGCTTTCATAATCTCATATCTTTCTAGTATTTCATAATCTCAT
ATCTTTCTAGTAAGAGCTAGGAAAGACAAAAAACTAGCTTCAAACCCTTAGGAAAGACAAAAAAC
TAGCTTCAAACCCTCGCTAATGCCCTATTGAATAGGTTGAGTTATAGGGAGATTGACCTTGCAAA
AAGGCTAAATAATAGGTCTATAGGCAAAGGGAAAGGGGTGCTTGA
Right flanking sequence: Indices 7979 -- 8478
CGGCTAACCACCCTAGCTAGCATTTTCTATAAGATAGGGCGTTCATCAAGCCTTCTTTAAGTCGG
AGTGTAGCGAAGTGATTCCCCAAAGAGTGAAAGTGGAACAAGACGGGATAGTTGCCTGCATCTCC
TTAACAGTAGAGAGAGCTATTTCTCACCAGTGAGGGCTGAAGAACGAGTGACTCTTGTTTTCGGG
TCTATGCCCATTGCCGATCATGTGGTCAGTTTCCCCGTGGAAAGCGAGGGAGCTGTTGATGGAAG
AGGAATCACCGGGTTGTTCGGTTCAATGGTTGGGAAGCTAAGCTCCTTAGAAAGGATTGACCGAC
AAGCCGCCCTCCATGCAGTAACCATCGAGGAGATCCGCGTAGAGATCAGCGAGAGCTCGCCACTC
CGTCCATATATCAGCAGTCTCAGTCTAGCTAAGAAGGTCTGACAGCTGAAAGTGACTTGTTGGCC
TTGCATCGTTTGCCCCAATGATGGCCTTTCTGATCTCATCCGTAT
Found at i:12392 original size:28 final size:28
Alignment explanation
Indices: 12352--12408 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
12342 TTTGATTCTC
12352 TATGGATCAGATAAGGTTGTATAGGCAG
1 TATGGATCAGATAAGGTTGTATAGGCAG
12380 TATGGATCAGATAAGGTTGTATAGGCAG
1 TATGGATCAGATAAGGTTGTATAGGCAG
12408 T
1 T
12409 CTAACAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.30
Consensus pattern (28 bp):
TATGGATCAGATAAGGTTGTATAGGCAG
Left flanking sequence: Indices 11852 -- 12351
AATTGAAACTGCGATTAGGAAATTTATTTCCAGAATCTAGTTGGACTTAGAGTCCGATGCCTATC
TTGTAAGTCTTTACAGAATGGACTTTGACTTTTGAAAGTGTGGAATTTTGCAGGATTGAAGGTAT
TAGGTAAAAATCCACTTTCTTGAATGAAGTGGACTGGGAAGGGAATGCGAATAGGATAGGTTTGC
GAAAGACCGAGGTCTTGACTTCTGCCTGCGCCTCTCGCTTTCATTCACAGGTTAGCCGAAGTCCT
TTGAAGGTCTGCTTGCACGGAGATAGTGATTCGATCTTCCCTGCCTTCCTTCGTAGTGCTTGCGA
GAAGGCTTTCTTGCGTTCTTGCTTAGCTTATTTCAAAGGGGAGGCAGTGGACCAATAAGCTAGCT
GTCCCAACCAAGCTTTATAAGCACGGTCTCTAAGATCAACTTTCCCCACTTATCCTATATGATAT
GACCAGCTTCATACTCATCTTTTCCTGTTTGGCTTTTTGATTCTC
Right flanking sequence: Indices 12409 -- 12908
CTAACAAGTATTCGTCTATGGTGGGCACAAGGAAAGAGTAGAATAGGCAAAGGCTGACATCCAGG
TTCTCCTAAGGAACATCGACATCTGAAAAGAATCACGCTAGTTTCAGCCATCACAAAGGGAATCA
CCCTGTCCTAGCACAATTCTTCTATATCTTATTGGCCCATGCGCGCTGAATTCATTACTTCTTAG
CCCAGGTTGAGGGGTGAGTTCCGTTCACTGATCGCTGGCCTGCAATCCGATCTTAGGCAGCATAC
ATCAGCCTGCCAATACTCCGTATTTTAGGTTACAACTTTCTTTCCTTTTATTTAATAGCCTGATC
GATTCATCCCAGGAAAGAGAAAATTCCAGCATATCACTCTCACACCGCACTCTGAGGTATGCCAG
AACTAAATCCGTGACCACCGCATACAAGCATATGCCATCGATCCTGACCTTCAACTCCCACAGCA
ATTGTCTTATCAGTAGCATGCGGACCAGGCTCTCTCTTATCAATA
Found at i:26144 original size:39 final size:41
Alignment explanation
Indices: 26089--26169 Score: 130
Period size: 39 Copynumber: 2.0 Consensus size: 41
26079 CCCATCCTTC
*
26089 AATATCATGATTGGGTCGACCAGG-C-CAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCACAGATCATGAGTGA
*
26128 AATATCATGATCGGGTCGACTAGGCCACAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCACAGATCATGAGTGA
26169 A
1 A
26170 TAGAAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 22 0.58
40 1 0.03
41 15 0.39
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (41 bp):
AATATCATGATCGGGTCGACCAGGCCACAGATCATGAGTGA
Left flanking sequence: Indices 25589 -- 26088
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
TGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGTTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAATAGCCCCATGAAGTGAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 26170 -- 26669
TAGAAAATAGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:42231 original size:16 final size:16
Alignment explanation
Indices: 42197--42235 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
42187 TTTCCTTTGC
* *
42197 AAGCCTCTTTCGTTGAT
1 AAGCC-CTTCCGTTCAT
42214 AAGCCCTTCCGTTCAT
1 AAGCCCTTCCGTTCAT
42230 AAGCCC
1 AAGCCC
42236 ATGAAATTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (16 bp):
AAGCCCTTCCGTTCAT
Left flanking sequence: Indices 41697 -- 42196
CAAAAAGCATTTCACCGGCACTAAGCCCTTCTCCCCTTACTCCAAGAGCCGAAACAGCCTCTATT
CCTTCAACAGCAGTTAGGCCTTTTTCTAATCCTACAGCCCTTCTCCCAAGAGTTTCAGAAAAGGC
TACCGACTTGGCCTACTTTGACTACGCTATTCTTCTCATTTCGAAAGAAGAAGAAGTAGCCCCGC
CGACGACAACAGATTCAATAGCTGGGGATCTTGCTAAGAATGAAACTCCTAACCTTAAATCATAG
AACCGGGGATGATTTCCAAGAATCCGAAGTTGGAGCGGGGAAAAAAAATCCCCAGTGGGTTTACT
TACTGAACTTCTTAGTCCCTCGCTAAAGTGCCAACATCCTTAGCAAGATGAGCTGACTGGGCTGG
CTTGTCTGAAAATTTATATGGGCTTGTATATGGCCCTCATATAGCGTGGATAAAGCTTTGATAGG
GTGGCTCCCTGTAATACCAGTAATAGCAAGAATTCTTTCCTTTGC
Right flanking sequence: Indices 42236 -- 42735
ATGAAATTCCAAGGCCTTCCACTAAGAATGGTGGATGAAGGTCAAATGAGAGAATTTCCCCTTGT
ACCTTTGAAGGAGCTATTGACTTCTCTTTCCCCGAGTAACTCACTAGGGGGACAAGAGCTAAAAT
GAGACCACGAAAGAGCAATCCAGCGAGCAAGGAAGCTAGTGGGTTATCTGGGTAGAGTGCGGCAT
ATCTGGAAACTGAGGATTGTTACAACCTCCAGGCAGCGGAAGCGAAGAGTGAAATGAGAGGAAGC
GAAAACTATGGTTTTCTATAGGAAGTAGTGTGTAGGCTAGCACTTCGGGAGTCCAAGCTGGACCC
ATTGTCTCACTAGCTTCTGAAAGACGAAGAAGTCTAAGTCCCGTAGTCTTGCTGCATGCATCTAC
TGAAAGAGAAGGGGGCTACCTTCAAATAAGCTGGATCATCTGGAGTTGCTAATTACCTCACTCAG
AATGATATTCCCCCGATCCGATTGAGTCGTTTTTGTAGACCATTC
Found at i:68673 original size:12 final size:12
Alignment explanation
Indices: 68656--68685 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68646 CAAGTGATTC
*
68656 AGTCAGTAGGAA
1 AGTCAGTAAGAA
68668 AGTCAGTAAGAA
1 AGTCAGTAAGAA
68680 AGTCAG
1 AGTCAG
68686 ATGCCTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.10, G:0.30, T:0.17
Consensus pattern (12 bp):
AGTCAGTAAGAA
Left flanking sequence: Indices 68156 -- 68655
ATCCGGTCAGTCAAAAAATAGTAAAAAAAAGAAAGTGTGTCTGGTCTGGTGTAGCTAATGTGACT
TTCTCGATCTATAGTTCTTCTTCTTTCTCTCTCTTGACCAATGCTCTGGCTTCCCTCACTCAAAA
AATAAGCCGTTGTGACATAGGTGTATCGAGGTAGGCCGTGGATTGAATAGAGAAAGAAGGGCTCG
TATTTGACAGATTTCGAGCAAGCCCCAACCTTCTATAAGGCCAGTCCTATCCCTTATGAATAAGT
GACCTGACCACTTTCATGCTTCGAATGAGAAGTTGCGCTTTCGATCTTGTTCTCAGCTCCCGGTC
TGGTCCTTTAGGCGAGGCTCTTTACAGGGCGGTTCCCTTTACGGTTCAGGAATTCGTGGTTGGCT
TACTTTTCTTTGGTTACAGTTCATGCCCACTCGTCATGAACCCCCGCCCGCCTCGACGCGGAGTT
GCAACTCTTCCTGTAGAAACCTCCTTCAACTGATTCAAGTGATTC
Right flanking sequence: Indices 68686 -- 69185
ATGCCTCTCCTGCAGGCCGAAACATTTACTTTGAATAGATGCGGTTCTCCCCATAAAATAAAGAA
AGAGTGAGCGCTCACTCTTTCTTTATGGGGCCCACCCAATTTTTGTTGCGAAATCTCACCTTTTG
GAAATCTCAAAGAAAGGAAAGTGGGAGTATAGGTTTTTTTGAAGACCTCTCCCTTCTCCATTATT
CTAATCTAACAATTAGGTAGGACACTCGTCCTACTTCTAAGGATAGATAGAAAAGGCGGGAGAGG
GTTTCACTATCTCTTTTCTTTCCGAGTCTACTTGACTTCTTTTTTTCTTTATGCAAGACCAGTAA
GTGGTTTTGGTATATCTTATGCAATCGATTGATTCTATCAGGTCCATTCTTCGGTAGTGCATAGG
CTCCGGCTTCTTCCTCTAGCCGAGCCACTACTTGCGTGTGTGTAATTCATGGCAGTTATTTATTA
TGGAGCGACTCTCTTTCTTGGATTTTCTTATAGTAGAGAGCGGTA
Found at i:82084 original size:7 final size:7
Alignment explanation
Indices: 82072--82102 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
82062 CCAGTTATTC
82072 AAAATAA
1 AAAATAA
82079 AAAATAA
1 AAAATAA
82086 AAAATAA
1 AAAATAA
82093 AAAATAA
1 AAAATAA
82100 AAA
1 AAA
82103 GACTCCCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAA
Left flanking sequence: Indices 81572 -- 82071
ACCCAAGCCCTTCCTTCGTAGAGCCATGTATTGTAAGTGATCCGAACCTGCCCGGAGCGAGCCCC
CCATAGAGGCAAGTGAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTCGGAGAGGA
CTCAGCTGTTAGTTAGTACCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTATATAC
GCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGATCGT
GACAAGTCGTTACTACTAGCAATGACTTCCTCTTTCATTACTTCATTCTTTCCATATCCCTCTCC
TTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAATTTAAGTTCGATCATTGAC
AAGGTTCAAAGAAAGGGTGGGCTATTGATAAAGAATCGATTCCAAACCACAATGCTAGCAGATGG
CGGGCCTCCGCTTTTATTTTCATTCATTTTTCCCGCCAGTTATTC
Right flanking sequence: Indices 82103 -- 82602
GACTCCCGGCGATCTTTGACCGGGCGGGGTAGGCAGAAGTTGATCCGGTAGATCGACTAGCAGTT
TCAGCTACTGCTCGTGATGATGATTTTGATTAGCGAGATGTTCACTTTTACTTGGATTATGCAAT
AGATTTTGCTTATTCTCCTCCCACGACCTAGCTATTACATTCCGACTCATGCATCTGCCGGTAAA
GTAAAGCACGTCCAAAGTGATGCGCGCCCCCATAGAAAGAAGCACGCCCGCCCGAAGTAGCATCC
TTAGACACGGCCTTATCGCGGGAGGAGAAGAGATGAAAGATTCATAGTTTCGAAGACCTTTCCAT
TGATAAGGCATTAAGGTATTCTTTCTTGAGGTTTTATCCTTTTCATGTATAGATAGATCGTTTAT
TCCAAAACCCAATAAACCTGGGAAGCTACGCCGTCTTACTCAACCACATAAAAACGACAGTGATG
GATGCAATTTCTCAAGTCTTGAATAAGGTCTTTGCTGGCATATTC
Found at i:96709 original size:25 final size:25
Alignment explanation
Indices: 96681--96730 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96671 ATTCAACTCC
96681 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
96706 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
96731 ACCCCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (25 bp):
TGAGAGATTCTATAGTTCCTGAGCT
Left flanking sequence: Indices 96181 -- 96680
TTAACAATTCATGGCATGAATTAGAGTTGAAGGAAGAAAGACATGAAATGCTAGAAAGATGGAAT
CTATGAATGAGCTCTTTCGTCTAAGCCTAGAACTAGGCAAGAGCAAGGAATGGACTTTAAGTGAG
TTAAAACCGGAAGGAGGGGACAAAGGTCAGTTCTATAAGGCAAGAAAGCAAGATCAGAAGAAGGA
GCAATGCAGAATAACTAAGCATGACAAGGAGAGGATAGCTAGACTTTCAAAGACAGTAGCAATGG
CAAGGAGACTAATCCCGATGTTCTTTCCCTAGCAATTGGAGGATTCTATTGATCCAAGACCTGTA
TGTAGACCTGGGCCTCCCCCGCTTTCAGTTAAGGCCAGAAAGGATTATCTTACCTTTCTCTTCTG
TCAGTCTTTGAAGTTTCCTTTCTTTGAAAACCAAGGATGAAGCTAGAATGTGGAGTACGGACTTA
TCATGCTTCCCAATTCCACTAGCATAAAAGAGTTTATTCAACTCC
Right flanking sequence: Indices 96731 -- 97230
ACCCCAATTTGATGAGAATGAGGGAAGAAGTCCTTAGCTATTCCTTTGGCCTATAATAAGAAAGG
TCCATCAAGACTCAGAAATTACCCTCGATCTTTTCAATCCCTCTAGTAGAGAATTCTTAGCCTTC
GTCTTAGAAACTGAGCTCTCACAAAGCAAGTCATTACTTATTGTTTACACACACTTTCTATTTTA
CTTAGCCTACTTCTTTATCATTAGATCAATTAGGCAGGGGAAGACTCTGTGTACTAACTTTCTCT
TCTTTCTTCTTCTTTGAAATCCCTTGCCACTTCCCTTCTTTGCTAGCACGTACCTGTCTTTGCTT
TGCACAAGAGATCCCCCTACTCTTCACACCCCTCTAGTCCTGATCTTGCTTATGCATTACTTGGG
AAGGATTGCCCTATCCCTTTGTTGGGGGCTTTGGCTACCCTACCTCATTCCCTTCACAAGCCAAG
GACAAGATGAATCTATTGCCCTGCCTCCAAGAGAAGAAATGGCAC
Found at i:98332 original size:21 final size:21
Alignment explanation
Indices: 98308--98351 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
98298 TCTTTGAGAG
98308 CATAAAGAGGGCCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
*
98329 CATAAAGAGGGTCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
98350 CA
1 CA
98352 AACTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.25
Consensus pattern (21 bp):
CATAAAGAGGGCCTTAGAATT
Left flanking sequence: Indices 97808 -- 98307
AGATTCCCCTTTCGATTGGAGTTCTACGGTGGGAAAGAAAGTAAGGAGTTAGAGCTCGGAAGTGA
GAACTAGCTTATAGGAGCGAAGCCACTCGACCAGAGGGAGAGGAATGAGTACTCTCTCTCCTCAT
TCAAAGAAGATAGAGGAATTCCCCAGTACTGCTATAACTATAGGGGGAGAAGTGAGAACTAGCTA
GACCATATTTACTTTTCTATAGGCTCGACCTTAAAAGAGGGAGTAAAAACTGACTTATAGGGGTT
GCCAGTCATAGCTATAGGAAGAGGGAATCCAACTATCGCAATTCAATCATAGGGCTAAACTGTGC
TTGATTAGTACCGGCTTTCGTTGAACTGAACAAGCGAAATGAGAATGTCAGTCTAGTGCTAAAAA
GGGCGAATAGCAATCGGGCTAAATGCATGGCTTCGACTCCTAATTCTACCTTTAAAGGGCTTCGT
TTCGGCCTATGGAATCTCAGTTCTGTAAAAGCCGGTCTTTGAGAG
Right flanking sequence: Indices 98352 -- 98851
AACTAGATATCGGATGAAAGTGGTATGACAACCTCAAACCCCGGTCCCATGGGGAGAGTTTTCTA
TTTGAGTTTCGGAAAAGAAAGGAGAAAGGACTTTTGAAGCTTGCTGACTAGGGTTGGAAGCTAAA
TTCAGTCTTCGCCATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGCTAC
TTTCTTGTGGTAGTCATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGA
CCGCAATTGCAGGAATAGGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTTCTTTCGTT
TAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAA
ACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTT
AGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGG
Found at i:99984 original size:18 final size:18
Alignment explanation
Indices: 99963--100005 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
99953 CAACCTTGTT
99963 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
99981 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
99999 GACTATG
1 GACTATG
100006 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 99463 -- 99962
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 100006 -- 100505
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAGGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACGCTGAACGAGACATT
CGAAAACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCC
CGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAA
AGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTA
GGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAG
AGTGAGGGGAAGAGGGAGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGT
TCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACG
Found at i:125082 original size:24 final size:23
Alignment explanation
Indices: 125054--125120 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 23
125044 ACAAAAAAGA
125054 TTTGTCTAAGTCACTTCCTTTCTT
1 TTTGTCTAAGTCACTT-CTTTCTT
*
125078 TTTGTCCAAGT---TTCTTCTCTT
1 TTTGTCTAAGTCACTTCTT-TCTT
*
125099 TTTGTCTAACTCACTTTCTTTC
1 TTTGTCTAAGTCAC-TTCTTTC
125121 GTAAAAGCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
20 3 0.09
21 15 0.43
24 12 0.34
25 5 0.14
ACGTcount: A:0.12, C:0.25, G:0.07, T:0.55
Consensus pattern (23 bp):
TTTGTCTAAGTCACTTCTTTCTT
Left flanking sequence: Indices 124554 -- 125053
TTGGAAGATCCAAAACAAAAAAGAGTGGTATTTGCTAGAAACAACATAATGGAGGCAGTCAATCA
ATATGGATTGATCCTAAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATGTAT
TGACTCAATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCCA
ATAGGAAATGGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTT
ATCGAATTTGAAACAGAGTCAGAAGAAATGGTTCGATCCTCTTCTTTTTCTTTCTCGAACCGAGA
GATCCATGAATTGGGATCCTAATGCATATAGATACAAATGGTCTAATGGGAGCAAGAATTTCCAG
GAACATTTCATTTCTGAGCGGAAGAACCGTTTTCTTTTTCAAGTAGTGTTCTATCGATTACGTAT
TAATCAATATTCGATGGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 125121 -- 125620
GTAAAAGCCAACCCTGAAAAGAAGAACTTTATGCCCCCTTTGTACACTTAGTTTAGGCAACTTCT
TTAAACGTGCCAAGTTGAAAAGCCAGGTAGAAACCCCACTCTACCCCCGCCGGATCCAGGAAATA
GAAAAGAAAGACAAGAAAAAAGCCCACCTCCGCATTCTCATGGCTGACTAGACCCGATCAACTCG
GAAAAGGAGTGAAACTGTCTTTTCTTCGAATGGCAATGCATCCGATTGTTTGCTAATAGACGACA
ACTTCTTCTTTGGATCAACCTTATTTATATATTCTATTATTACACCGACCCGCTCTTTAGAACGA
AATGAATGTTGGCATAGAGGCCATCTATGCGCAAGCCCCATTACGAAATGATACATCCGATACCG
AGTCTCCTTTTAGAGTAGCAGCCGGAGTGAGGCATCCGTGCCTAAACCATATTTTTTCTTCCATG
ACATTAGCATGGCTTATTCTCTTTTCTCGAATGGTGTATATTAGC
Found at i:173708 original size:34 final size:34
Alignment explanation
Indices: 173664--173792 Score: 240
Period size: 34 Copynumber: 3.8 Consensus size: 34
173654 AGCGGAATCG
*
173664 GGTTGAAAGGTAAGGATAGCGTGATTGGCCGATT
1 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
173698 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
1 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
173732 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
1 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
*
173766 GGTTGGAAGGTAAGGATAGCATGATTG
1 GGTTGGAAGGTAAGGATAGCGTGATTG
173793 ACTGGTTGCG
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 93 1.00
ACGTcount: A:0.26, C:0.08, G:0.40, T:0.26
Consensus pattern (34 bp):
GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
Left flanking sequence: Indices 173164 -- 173663
TATTCATATTAAATAAAAATCAATAAAATAAGTAAATAAAAATGAAGTAGAAGAACTCAGATTCC
AAATGAACCCACATATAAAATATAAAAGTGGGCTGGTCTGCTCATTTTTTGTGTTCGTACATTTA
TTCATTATTGCAATACAAATAACACCTCCACTATACTAGTTATGGAGGGGATTCGCGCCGGATGG
AACAAGGCGTTTTGAACCATATACTACTGTTGCTGGAATGAAACGCAGCCTCGGAACATAATTAT
GCTGCTTGCTGGGCCCTGATGGTGGAACTGGCATTTTTTGGGGGAAGAAAGCGGCCCCCTTTTGC
GGCGGAGTGGGCAGCATCGCTTTCCCTCGTGTAGCTATGATGCCATTCAGAAACAACACAAGAAG
AAGAAAAAAAAGCAGTATTTCGCGGATTCTTGCCATCACTGGAAAACAAATTGAGCTGTAGGCAT
CAAGGTAAGGGACCGAGATTATATACTGCTGCGGAAGCGGAATCG
Right flanking sequence: Indices 173793 -- 174292
ACTGGTTGCGGGTCCTTTGGATCATGGGCCACAGCTACTTGGGTAGAGACCGCTGAAGATCATTT
GGACAGGCCGAGGCTATATGGGCTTAGGCCTTTTGATGGCTGTCATTTTCTGGGCTATTTGGAAG
GGTTAACTAATTATGTATATAAGCAGTCAACCAAGATCGGGTGTTCTTTGCTTTTTCATGAGGAA
ATACTGCTCTTTTATTTCATTTGCTGTTGCTAACACATCTTTGGTCATGACGATGTAGATGGTTT
TACGGCATATGCTTACTTATTATATGGATTAGCTATCTTTAAGTGGTTTGGAGCAATCAATAATT
AGGTTAGCTAGGGCGAAGGGAGAAACTGCCTTGAAGGCAGCCATGGCTTCAGAGTCTGTAGTCCA
ACTGGGACTTATAATGGCCTTGCCCATGATTATGGAGATTGGACTAGAAAGAGGATTAACCGCAT
TGAGTGAAATGATCATCATGCAGTTGCAACTAGCAGCTGTTTTCT
Found at i:194128 original size:25 final size:25
Alignment explanation
Indices: 194100--194149 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
194090 ATTCAACTCC
194100 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
194125 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
194150 ACCCCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (25 bp):
TGAGAGATTCTATAGTTCCTGAGCT
Left flanking sequence: Indices 193600 -- 194099
TTAACAATTCATGGCATGAATTAGAGTTGAAGGAAGAAAGACATGAAATGCTAGAAAGATGGAAT
CTATGAATGAGCTCTTTCGTCTAAGCCTAGAACTAGGCAAGAGCAAGGAATGGACTTTAAGTGAG
TTAAAACCGGAAGGAGGGGACAAAGGTCAGTTCTATAAGGCAAGAAAGCAAGATCAGAAGAAGGA
GCAATGCAGAATAACTAAGCATGACAAGGAGAGGATAGCTAGACTTTCAAAGACAGTAGCAATGG
CAAGGAGACTAATCCCGATGTTCTTTCCCTAGCAATTGGAGGATTCTATTGATCCAAGACCTGTA
TGTAGACCTGGGCCTCCCCCGCTTTCAGTTAAGGCCAGAAAGGATTATCTTACCTTTCTCTTCTG
TCAGTCTTTGAAGTTTCCTTTCTTTGAAAACCAAGGATGAAGCTAGAATGTGGAGTACGGACTTA
TCATGCTTCCCAATTCCACTAGCATAAAAGAGTTTATTCAACTCC
Right flanking sequence: Indices 194150 -- 194649
ACCCCAATTTGATGAGAATGAGGGAAGAAGTCCTTAGCTATTCCTTTGGCCTATAATAAGAAAGG
TCCATCAAGACTCAGAAATTACCCTCGATCTTTTCAATCCCTCTAGTAGAGAATTCTTAGCCTTC
GTCTTAGAAACTGAGCTCTCACAAAGCAAGTCATTACTTATTGTTTACACACACTTTCTATTTTA
CTTAGCCTACTTCTTTATCATTAGATCAATTAGGCAGGGGAAGACTCTGTGTACTAACTTTCTCT
TCTTTCTTCTTCTTTGAAATCCCTTGCCACTTCCCTTCTTTGCTAGCACGTACCTGTCTTTGCTT
TGCACAAGAGATCCCCCTACTCTTCACACCCCTCTAGTCCTGATCTTGCTTATGCATTACTTGGG
AAGGATTGCCCTATCCCTTTGTTGGGGGCTTTGGCTACCCTACCTCATTCCCTTCACAAGCCAAG
GACAAGATGAATCTATTGCCCTGCCTCCAAGAGAAGAAATGGCAC
Found at i:195751 original size:21 final size:21
Alignment explanation
Indices: 195727--195770 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
195717 TCTTTGAGAG
195727 CATAAAGAGGGCCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
*
195748 CATAAAGAGGGTCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
195769 CA
1 CA
195771 AACTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.25
Consensus pattern (21 bp):
CATAAAGAGGGCCTTAGAATT
Left flanking sequence: Indices 195227 -- 195726
AGATTCCCCTTTCGATTGGAGTTCTACGGTGGGAAAGAAAGTAAGGAGTTAGAGCTCGGAAGTGA
GAACTAGCTTATAGGAGCGAAGCCACTCGACCAGAGGGAGAGGAATGAGTACTCTCTCTCCTCAT
TCAAAGAAGATAGAGGAATTCCCCAGTACTGCTATAACTATAGGGGGAGAAGTGAGAACTAGCTA
GACCATATTTACTTTTCTATAGGCTCGACCTTAAAAGAGGGAGTAAAAACTGACTTATAGGGGTT
GCCAGTCATAGCTATAGGAAGAGGGAATCCAACTATCGCAATTCAATCATAGGGCTAAACTGTGC
TTGATTAGTACCGGCTTTCGTTGAACTGAACAAGCGAAATGAGAATGTCAGTCTAGTGCTAAAAA
GGGCGAATAGCAATCGGGCTAAATGCATGGCTTCGACTCCTAATTCTACCTTTAAAGGGCTTCGT
TTCGGCCTATGGAATCTCAGTTCTGTAAAAGCCGGTCTTTGAGAG
Right flanking sequence: Indices 195771 -- 196270
AACTAGATATCGGATGAAAGTGGTATGACAACCTCAAACCCCGGTCCCATGGGGAGAGTTTTCTA
TTTGAGTTTCGGAAAAGAAAGGAGAAAGGACTTTTGAAGCTTGCTGACTAGGGTTGGAAGCTAAA
TTCAGTCTTCGCCATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGCTAC
TTTCTTGTGGTAGTCATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGA
CCGCAATTGCAGGAATAGGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTTCTTTCGTT
TAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAA
ACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTT
AGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGG
Found at i:197403 original size:18 final size:18
Alignment explanation
Indices: 197382--197424 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
197372 CAACCTTGTT
197382 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
197400 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
197418 GACTATG
1 GACTATG
197425 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 196882 -- 197381
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 197425 -- 197924
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAGGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACGCTGAACGAGACATT
CGAAAACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCC
CGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAA
AGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTA
GGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAG
AGTGAGGGGAAGAGGGAGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGT
TCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACG
Found at i:222501 original size:24 final size:23
Alignment explanation
Indices: 222473--222539 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 23
222463 ACAAAAAAGA
222473 TTTGTCTAAGTCACTTCCTTTCTT
1 TTTGTCTAAGTCACTT-CTTTCTT
*
222497 TTTGTCCAAGT---TTCTTCTCTT
1 TTTGTCTAAGTCACTTCTT-TCTT
*
222518 TTTGTCTAACTCACTTTCTTTC
1 TTTGTCTAAGTCAC-TTCTTTC
222540 GTAAAAGCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
20 3 0.09
21 15 0.43
24 12 0.34
25 5 0.14
ACGTcount: A:0.12, C:0.25, G:0.07, T:0.55
Consensus pattern (23 bp):
TTTGTCTAAGTCACTTCTTTCTT
Left flanking sequence: Indices 221973 -- 222472
TTGGAAGATCCAAAACAAAAAAGAGTGGTATTTGCTAGAAACAACATAATGGAGGCAGTCAATCA
ATATGGATTGATCCTAAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATGTAT
TGACTCAATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCCA
ATAGGAAATGGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTT
ATCGAATTTGAAACAGAGTCAGAAGAAATGGTTCGATCCTCTTCTTTTTCTTTCTCGAACCGAGA
GATCCATGAATTGGGATCCTAATGCATATAGATACAAATGGTCTAATGGGAGCAAGAATTTCCAG
GAACATTTCATTTCTGAGCGGAAGAACCGTTTTCTTTTTCAAGTAGTGTTCTATCGATTACGTAT
TAATCAATATTCGATGGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 222540 -- 223039
GTAAAAGCCAACCCTGAAAAGAAGAACTTTATGCCCCCTTTGTACACTTAGTTTAGGCAACTTCT
TTAAACGTGCCAAGTTGAAAAGCCAGGTAGAAACCCCACTCTACCCCCGCCGGATCCAGGAAATA
GAAAAGAAAGACAAGAAAAAAGCCCACCTCCGCATTCTCATGGCTGACTAGACCCGATCAACTCG
GAAAAGGAGTGAAACTGTCTTTTCTTCGAATGGCAATGCATCCGATTGTTTGCTAATAGACGACA
ACTTCTTCTTTGGATCAACCTTATTTATATATTCTATTATTACACCGACCCGCTCTTTAGAACGA
AATGAATGTTGGCATAGAGGCCATCTATGCGCAAGCCCCATTACGAAATGATACATCCGATACCG
AGTCTCCTTTTAGAGTAGCAGCCGGAGTGAGGCATCCGTGCCTAAACCATATTTTTTCTTCCATG
ACATTAGCATGGCTTATTCTCTTTTCTCGAATGGTGTATATTAGC
Found at i:247754 original size:20 final size:21
Alignment explanation
Indices: 247724--247767 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
247714 AAGACAGGCA
247724 AAGGTAAGGGGAAAAACAGAT
1 AAGGTAAGGGGAAAAACAGAT
*
247745 AAGG-AAGGGGAAAAACAGTT
1 AAGGTAAGGGGAAAAACAGAT
247765 AAG
1 AAG
247768 AATGACTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09
Consensus pattern (21 bp):
AAGGTAAGGGGAAAAACAGAT
Left flanking sequence: Indices 247224 -- 247723
TCTAGCAAAGAAGTCAGCTATGGGCAAGACTTGGGGCGGGCCACCAAAGCGGGTTTAGCCGGTTA
GAGCTCAAGAGAATCGCTTCACGCCTTGCTTGCAAGAGCTAGACAGCAAAACCATTCCTAGCCAC
CATTGCTTTCGAAAGAGCTTACATTTCAGGGAACATCTACTTGATAATTTTCTATAGTGAAAGCC
TTTTTCCAGGCAAAGACCCCACTCATAGGGTGAAGGCAGCCATCACTGGAGAATAGCTCCTAGCC
TTATTCTAAGAAGGCGCATGCCATCAAACGAAAGGAAGGGCCCAAACCGTTAGGGAGCATATGTT
TCCAATAGCAAGAGTCAGTCCAAGCAGCGGAACACGTTACCCATTTCAACTAGGGAAGTTTCCAA
ACTAAAATTCGAAATGAGATCTTCCATCTTGATTAGCATGGTAGGTAGGCATGAAAGATGAGGCA
AAGAATGTTCCGCATCTCCCCGGCCAGAAGCTTTCAAGACAGGCA
Right flanking sequence: Indices 247768 -- 248267
AATGACTTTGCTAGGAGTTAGGACCTTTCATCCAATACATGTCAGGGGATTTTGATCCCAATAGA
ATGCTATTTTACCTAGGTCAAAACCACGTTAAGGATACCTCTTTATACCCTTTCTATTATAGGCT
TAAAGCATGAGGGTGGACCCTTATTTTAGCTTGCCTATAGCAGGTATTAGAGAAGGATGACCCGC
ATGTGGGTGAAAAGCCTCTCTAATACTAATAGCGGAGAGTGATAGTACGATGGATAGGTCTCATC
AGAGGTTCTGGCTGGTATTGCTGCTATAAGTCCGTTCGGGGAGTCCGTGGCGTAAACAAAGAAGG
ATTTGAGTCTGAGAAAGACTGTTTCCCCATTTTCATACGAATAGTGAGAAATCTCAGAGTTTATC
CAGTTGGGGCATAGAAAGAAGACCTGAACTCGGTGTTTCCTCAATCTGAATAGATCAATCTGGAT
TATAGGCCAGCAAGCCCGGAACCAGCAAGTGGGAGCCTGCTGGCA
Found at i:315528 original size:36 final size:36
Alignment explanation
Indices: 315481--315553 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
315471 TCTCAACTAG
315481 TGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTAC
1 TGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTAC
315517 TGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTAC
1 TGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTAC
315553 T
1 T
315554 CCTACTCCGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (36 bp):
TGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTAC
Left flanking sequence: Indices 314981 -- 315480
TCATCCTTCATCATCGTTTACTTAGAATCTCTCTATCTATGCTATGAAGGGTTAAAACCTTGCCC
TTTCAATCTCGACCTACGCTTGGAATAGTGGCTTTAGATAGTCATCTTCCTCCACTGCACGAGCC
AGACCTTGTACGGGCTTTTCCCTTGAGTGGACAGGCTTGAGCGAGCATTCCGCCTTATGAACAAG
GAAAGGAAAGGACGAGATAGCCAATAGACGAGGAAAGGTTCCGGGAGAAGGGGGATTAAGCAAGT
CTTCTTTGATCCTGCTTATTAATAAGTTTTCCCGCGAAGGCTGCCCCACTATGGCAGTGGTGTGC
TTAGGGTGAAATGCCACTCCTGAGCTAGCAGGTTCTCCCCTTGAGGCGCAGCTATCGGAAAGGGA
AGCAAGTAAGCCTAAGCCCTATCGTATCAGTGAGTCAGGCATAAAGCTAGGGGTAAGTGGCCCAG
GAAGCCTGCTCGTACAACCTTGAGTAATCTGTCTATCTCAACTAG
Right flanking sequence: Indices 315554 -- 316053
CCTACTCCGCAGAAGATTTGCTAGAATTAAACATGGAGACACTCTTCCTTTCTCTTCTCTCTGCT
TCGGGGAAACTAACTTTCTTTAGTCTCTATCCTTCTACTAGCTAGAAAAGCCTGACTTCACGGGT
ACTAAGATTAACTGCTTTTCTCCTCTTGCCACAGCTTGACTACCCCTTTACTACTTGAACTATCA
AGCTTGACTACCCCTTTACTATCAAGCCAAGCCTCCTTTACTACTTGAACTATCAAGCCTCCTTT
ACTACTTGAACTATCAAGCCTTAATCGTATCGTTTAGCAGGAAAGTAAGACAGGCCAGGCTCCTT
AAGCATAGTTGAAAAGAAATGGTAAGGATCTATACACCAGAGAGGAAGTACTGCCCTTTATGGCA
ATTCTCTCGATCTCTGATAAGTCAGCTAACGGATGAACTCAAAAGTCTCCCATTGGATAAGATAG
AGCTAATTCTGTATTACCCTAAAATAAAGGGGATTTTTTTCTACA
Found at i:315802 original size:31 final size:31
Alignment explanation
Indices: 315766--315833 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 31
315756 CTACCCCTTT
315766 ACTATCAAGCCAAGCCTCCTTTACTACTTGA
1 ACTATCAAGCCAAGCCTCCTTTACTACTTGA
315797 ACTAT-----CAAGCCTCCTTTACTACTTGA
1 ACTATCAAGCCAAGCCTCCTTTACTACTTGA
315823 ACTATCAAGCC
1 ACTATCAAGCC
315834 TTAATCGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
26 26 0.81
31 6 0.19
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (31 bp):
ACTATCAAGCCAAGCCTCCTTTACTACTTGA
Left flanking sequence: Indices 315266 -- 315765
GTTTTCCCGCGAAGGCTGCCCCACTATGGCAGTGGTGTGCTTAGGGTGAAATGCCACTCCTGAGC
TAGCAGGTTCTCCCCTTGAGGCGCAGCTATCGGAAAGGGAAGCAAGTAAGCCTAAGCCCTATCGT
ATCAGTGAGTCAGGCATAAAGCTAGGGGTAAGTGGCCCAGGAAGCCTGCTCGTACAACCTTGAGT
AATCTGTCTATCTCAACTAGTGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTACTGAAAGAAG
TTACTTGCCTACTCAACTAGGTGCTACTCCTACTCCGCAGAAGATTTGCTAGAATTAAACATGGA
GACACTCTTCCTTTCTCTTCTCTCTGCTTCGGGGAAACTAACTTTCTTTAGTCTCTATCCTTCTA
CTAGCTAGAAAAGCCTGACTTCACGGGTACTAAGATTAACTGCTTTTCTCCTCTTGCCACAGCTT
GACTACCCCTTTACTACTTGAACTATCAAGCTTGACTACCCCTTT
Right flanking sequence: Indices 315834 -- 316333
TTAATCGTATCGTTTAGCAGGAAAGTAAGACAGGCCAGGCTCCTTAAGCATAGTTGAAAAGAAAT
GGTAAGGATCTATACACCAGAGAGGAAGTACTGCCCTTTATGGCAATTCTCTCGATCTCTGATAA
GTCAGCTAACGGATGAACTCAAAAGTCTCCCATTGGATAAGATAGAGCTAATTCTGTATTACCCT
AAAATAAAGGGGATTTTTTTCTACATCAAGAGAAGTAGGTTTGGATAATAATGCCAGCTGGGACA
GATCTTATTTTCAAGAAAGTTAGCTCGTCCATTCGTTGGGTGATCCCTTGCTCTCACGTTCGAGT
GTTTGCTCGTCGTTTAGGCCGGTGAGTGAACATAGGCATTTTTCTCTTAATAATGGAGACTGTAG
TTGGGAACGTCTAAGTTATGATTTAGAATCATATCTTTGAATTTCTCATATTTTTGCAGATGAGA
ATCCCAACCTTCATTTGTATTTGTACATTCACCTCCACATACAAG
Found at i:315806 original size:26 final size:26
Alignment explanation
Indices: 315776--315834 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
315766 ACTATCAAGC
315776 CAAGCCTCCTTTACTACTTGAACTAT
1 CAAGCCTCCTTTACTACTTGAACTAT
315802 CAAGCCTCCTTTACTACTTGAACTAT
1 CAAGCCTCCTTTACTACTTGAACTAT
315828 CAAGCCT
1 CAAGCCT
315835 TAATCGTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.32
Consensus pattern (26 bp):
CAAGCCTCCTTTACTACTTGAACTAT
Left flanking sequence: Indices 315276 -- 315775
GAAGGCTGCCCCACTATGGCAGTGGTGTGCTTAGGGTGAAATGCCACTCCTGAGCTAGCAGGTTC
TCCCCTTGAGGCGCAGCTATCGGAAAGGGAAGCAAGTAAGCCTAAGCCCTATCGTATCAGTGAGT
CAGGCATAAAGCTAGGGGTAAGTGGCCCAGGAAGCCTGCTCGTACAACCTTGAGTAATCTGTCTA
TCTCAACTAGTGAAAGAAGTTACTTGCCTACTCAACTAGGTGCTACTGAAAGAAGTTACTTGCCT
ACTCAACTAGGTGCTACTCCTACTCCGCAGAAGATTTGCTAGAATTAAACATGGAGACACTCTTC
CTTTCTCTTCTCTCTGCTTCGGGGAAACTAACTTTCTTTAGTCTCTATCCTTCTACTAGCTAGAA
AAGCCTGACTTCACGGGTACTAAGATTAACTGCTTTTCTCCTCTTGCCACAGCTTGACTACCCCT
TTACTACTTGAACTATCAAGCTTGACTACCCCTTTACTATCAAGC
Right flanking sequence: Indices 315835 -- 316334
TAATCGTATCGTTTAGCAGGAAAGTAAGACAGGCCAGGCTCCTTAAGCATAGTTGAAAAGAAATG
GTAAGGATCTATACACCAGAGAGGAAGTACTGCCCTTTATGGCAATTCTCTCGATCTCTGATAAG
TCAGCTAACGGATGAACTCAAAAGTCTCCCATTGGATAAGATAGAGCTAATTCTGTATTACCCTA
AAATAAAGGGGATTTTTTTCTACATCAAGAGAAGTAGGTTTGGATAATAATGCCAGCTGGGACAG
ATCTTATTTTCAAGAAAGTTAGCTCGTCCATTCGTTGGGTGATCCCTTGCTCTCACGTTCGAGTG
TTTGCTCGTCGTTTAGGCCGGTGAGTGAACATAGGCATTTTTCTCTTAATAATGGAGACTGTAGT
TGGGAACGTCTAAGTTATGATTTAGAATCATATCTTTGAATTTCTCATATTTTTGCAGATGAGAA
TCCCAACCTTCATTTGTATTTGTACATTCACCTCCACATACAAGA
Found at i:320318 original size:34 final size:34
Alignment explanation
Indices: 320279--320407 Score: 240
Period size: 34 Copynumber: 3.8 Consensus size: 34
320269 CGCAACCAGT
*
320279 CAATCATGCTATCCTTACCTTCCAACCAATCGGC
1 CAATCACGCTATCCTTACCTTCCAACCAATCGGC
320313 CAATCACGCTATCCTTACCTTCCAACCAATCGGC
1 CAATCACGCTATCCTTACCTTCCAACCAATCGGC
320347 CAATCACGCTATCCTTACCTTCCAACCAATCGGC
1 CAATCACGCTATCCTTACCTTCCAACCAATCGGC
*
320381 CAATCACGCTATCCTTACCTTTCAACC
1 CAATCACGCTATCCTTACCTTCCAACC
320408 CGATTCCGCT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 93 1.00
ACGTcount: A:0.26, C:0.40, G:0.08, T:0.26
Consensus pattern (34 bp):
CAATCACGCTATCCTTACCTTCCAACCAATCGGC
Left flanking sequence: Indices 319779 -- 320278
AGAAAACAGCTGCTAGTTGCAACTGCATGATGATCATTTCACTCAATGCGGTTAATCCTCTTTCT
AGTCCAATCTCCATAATCATGGGCAAGGCCATTATAAGTCCCAGTTGGACTACAGACTCTGAAGC
CATGGCTGCCTTCAAGGCAGTTTCTCCCTTCGCCCTAGCTAACCTAATTATTGATTGCTCCAAAC
CACTTAAAGATAGCTAATCCATATAATAAGTAAGCATATGCCGTAAAACCATCTACATCGTCATG
ACCAAAGATGTGTTAGCAACAGCAAATGAAATAAAAGAGCAGTATTTCCTCATGAAAAAGCAAAG
AACACCCGATCTTGGTTGACTGCTTATATACATAATTAGTTAACCCTTCCAAATAGCCCAGAAAA
TGACAGCCATCAAAAGGCCTAAGCCCATATAGCCTCGGCCTGTCCAAATGATCTTCAGCGGTCTC
TACCCAAGTAGCTGTGGCCCATGATCCAAAGGACCCGCAACCAGT
Right flanking sequence: Indices 320408 -- 320907
CGATTCCGCTTCCGCAGCAGTATATAATCTCGGTCCCTTACCTTGATGCCTACAGCTCAATTTGT
TTTCCAGTGATGGCAAGAATCCGCGAAATACTGCTTTTTTTTCTTCTTCTTGTGTTGTTTCTGAA
TGGCATCATAGCTACACGAGGGAAAGCGATGCTGCCCACTCCGCCGCAAAAGGGGGCCGCTTTCT
TCCCCCAAAAAATGCCAGTTCCACCATCAGGGCCCAGCAAGCAGCATAATTATGTTCCGAGGCTG
CGTTTCATTCCAGCAACAGTAGTATATGGTTCAAAACGCCTTGTTCCATCCGGCGCGAATCCCCT
CCATAACTAGTATAGTGGAGGTGTTATTTGTATTGCAATAATGAATAAATGTACGAACACAAAAA
ATGAGCAGACCAGCCCACTTTTATATTTTATATGTGGGTTCATTTGGAATCTGAGTTCTTCTACT
TCATTTTTATTTACTTATTTTATTGATTTTTATTTAATATGAATA
Found at i:343129 original size:12 final size:12
Alignment explanation
Indices: 343112--343141 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
343102 CAAGTGATTC
*
343112 AGTCAGTAGGAA
1 AGTCAGTAAGAA
343124 AGTCAGTAAGAA
1 AGTCAGTAAGAA
343136 AGTCAG
1 AGTCAG
343142 ATGCCTCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.10, G:0.30, T:0.17
Consensus pattern (12 bp):
AGTCAGTAAGAA
Left flanking sequence: Indices 342612 -- 343111
ATCCGGTCAGTCAAAAAATAGTAAAAAAAAGAAAGTGTGTCTGGTCTGGTGTAGCTAATGTGACT
TTCTCGATCTATAGTTCTTCTTCTTTCTCTCTCTTGACCAATGCTCTGGCTTCCCTCACTCAAAA
AATAAGCCGTTGTGACATAGGTGTATCGAGGTAGGCCGTGGATTGAATAGAGAAAGAAGGGCTCG
TATTTGACAGATTTCGAGCAAGCCCCAACCTTCTATAAGGCCAGTCCTATCCCTTATGAATAAGT
GACCTGACCACTTTCATGCTTCGAATGAGAAGTTGCGCTTTCGATCTTGTTCTCAGCTCCCGGTC
TGGTCCTTTAGGCGAGGCTCTTTACAGGGCGGTTCCCTTTACGGTTCAGGAATTCGTGGTTGGCT
TACTTTTCTTTGGTTACAGTTCATGCCCACTCGTCATGAACCCCCGCCCGCCTCGACGCGGAGTT
GCAACTCTTCCTGTAGAAACCTCCTTCAACTGATTCAAGTGATTC
Right flanking sequence: Indices 343142 -- 343641
ATGCCTCTCCTGCAGGCCGAAACATTTACTTTGAATAGATGCGGTTCTCCCCATAAAATAAAGAA
AGAGTGAGCGCTCACTCTTTCTTTATGGGGCCCACCCAATTTTTGTTGCGAAATCTCACCTTTTG
GAAATCTCAAAGAAAGGAAAGTGGGAGTATAGGTTTTTTTGAAGACCTCTCCCTTCTCCATTATT
CTAATCTAACAATTAGGTAGGACACTCGTCCTACTTCTAAGGATAGATAGAAAAGGCGGGAGAGG
GTTTCACTATCTCTTTTCTTTCCGAGTCTACTTGACTTCTTTTTTTCTTTATGCAAGACCAGTAA
GTGGTTTTGGTATATCTTATGCAATCGATTGATTCTATCAGGTCCATTCTTCGGTAGTGCATAGG
CTCCGGCTTCTTCCTCTAGCCGAGCCACTACTTGCGTGTGTGTAATTCATGGCAGTTATTTATTA
TGGAGCGACTCTCTTTCTTGGATTTTCTTATAGTAGAGAGCGGTA
Found at i:356540 original size:7 final size:7
Alignment explanation
Indices: 356528--356558 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
356518 CCAGTTATTC
356528 AAAATAA
1 AAAATAA
356535 AAAATAA
1 AAAATAA
356542 AAAATAA
1 AAAATAA
356549 AAAATAA
1 AAAATAA
356556 AAA
1 AAA
356559 GACTCCCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAATAA
Left flanking sequence: Indices 356028 -- 356527
ACCCAAGCCCTTCCTTCGTAGAGCCATGTATTGTAAGTGATCCGAACCTGCCCGGAGCGAGCCCC
CCATAGAGGCAAGTGAAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTCGGAGAGGA
CTCAGCTGTTAGTTAGTACCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTATTTTATTATATAC
GCTTAGTGAAAAGAATGTTTTTTGATACACCTAGGACATGGATTCTATATGAACCAATGGATCGT
GACAAGTCGTTACTACTAGCAATGACTTCCTCTTTCATTACTTCATTCTTTCCATATCCCTCTCC
TTTGTTCTCAGTTACTCATCAAATGGCACTCAGTTCATATCTTTAATTTAAGTTCGATCATTGAC
AAGGTTCAAAGAAAGGGTGGGCTATTGATAAAGAATCGATTCCAAACCACAATGCTAGCAGATGG
CGGGCCTCCGCTTTTATTTTCATTCATTTTTCCCGCCAGTTATTC
Right flanking sequence: Indices 356559 -- 357058
GACTCCCGGCGATCTTTGACCGGGCGGGGTAGGCAGAAGTTGATCCGGTAGATCGACTAGCAGTT
TCAGCTACTGCTCGTGATGATGATTTTGATTAGCGAGATGTTCACTTTTACTTGGATTATGCAAT
AGATTTTGCTTATTCTCCTCCCACGACCTAGCTATTACATTCCGACTCATGCATCTGCCGGTAAA
GTAAAGCACGTCCAAAGTGATGCGCGCCCCCATAGAAAGAAGCACGCCCGCCCGAAGTAGCATCC
TTAGACACGGCCTTATCGCGGGAGGAGAAGAGATGAAAGATTCATAGTTTCGAAGACCTTTCCAT
TGATAAGGCATTAAGGTATTCTTTCTTGAGGTTTTATCCTTTTCATGTATAGATAGATCGTTTAT
TCCAAAACCCAATAAACCTGGGAAGCTACGCCGTCTTACTCAACCACATAAAAACGACAGTGATG
GATGCAATTTCTCAAGTCTTGAATAAGGTCTTTGCTGGCATATTC
Found at i:371165 original size:25 final size:25
Alignment explanation
Indices: 371137--371186 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
371127 ATTCAACTCC
371137 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
371162 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
371187 ACCCCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (25 bp):
TGAGAGATTCTATAGTTCCTGAGCT
Left flanking sequence: Indices 370637 -- 371136
TTAACAATTCATGGCATGAATTAGAGTTGAAGGAAGAAAGACATGAAATGCTAGAAAGATGGAAT
CTATGAATGAGCTCTTTCGTCTAAGCCTAGAACTAGGCAAGAGCAAGGAATGGACTTTAAGTGAG
TTAAAACCGGAAGGAGGGGACAAAGGTCAGTTCTATAAGGCAAGAAAGCAAGATCAGAAGAAGGA
GCAATGCAGAATAACTAAGCATGACAAGGAGAGGATAGCTAGACTTTCAAAGACAGTAGCAATGG
CAAGGAGACTAATCCCGATGTTCTTTCCCTAGCAATTGGAGGATTCTATTGATCCAAGACCTGTA
TGTAGACCTGGGCCTCCCCCGCTTTCAGTTAAGGCCAGAAAGGATTATCTTACCTTTCTCTTCTG
TCAGTCTTTGAAGTTTCCTTTCTTTGAAAACCAAGGATGAAGCTAGAATGTGGAGTACGGACTTA
TCATGCTTCCCAATTCCACTAGCATAAAAGAGTTTATTCAACTCC
Right flanking sequence: Indices 371187 -- 371686
ACCCCAATTTGATGAGAATGAGGGAAGAAGTCCTTAGCTATTCCTTTGGCCTATAATAAGAAAGG
TCCATCAAGACTCAGAAATTACCCTCGATCTTTTCAATCCCTCTAGTAGAGAATTCTTAGCCTTC
GTCTTAGAAACTGAGCTCTCACAAAGCAAGTCATTACTTATTGTTTACACACACTTTCTATTTTA
CTTAGCCTACTTCTTTATCATTAGATCAATTAGGCAGGGGAAGACTCTGTGTACTAACTTTCTCT
TCTTTCTTCTTCTTTGAAATCCCTTGCCACTTCCCTTCTTTGCTAGCACGTACCTGTCTTTGCTT
TGCACAAGAGATCCCCCTACTCTTCACACCCCTCTAGTCCTGATCTTGCTTATGCATTACTTGGG
AAGGATTGCCCTATCCCTTTGTTGGGGGCTTTGGCTACCCTACCTCATTCCCTTCACAAGCCAAG
GACAAGATGAATCTATTGCCCTGCCTCCAAGAGAAGAAATGGCAC
Found at i:372788 original size:21 final size:21
Alignment explanation
Indices: 372764--372807 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
372754 TCTTTGAGAG
372764 CATAAAGAGGGCCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
*
372785 CATAAAGAGGGTCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
372806 CA
1 CA
372808 AACTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.25
Consensus pattern (21 bp):
CATAAAGAGGGCCTTAGAATT
Left flanking sequence: Indices 372264 -- 372763
AGATTCCCCTTTCGATTGGAGTTCTACGGTGGGAAAGAAAGTAAGGAGTTAGAGCTCGGAAGTGA
GAACTAGCTTATAGGAGCGAAGCCACTCGACCAGAGGGAGAGGAATGAGTACTCTCTCTCCTCAT
TCAAAGAAGATAGAGGAATTCCCCAGTACTGCTATAACTATAGGGGGAGAAGTGAGAACTAGCTA
GACCATATTTACTTTTCTATAGGCTCGACCTTAAAAGAGGGAGTAAAAACTGACTTATAGGGGTT
GCCAGTCATAGCTATAGGAAGAGGGAATCCAACTATCGCAATTCAATCATAGGGCTAAACTGTGC
TTGATTAGTACCGGCTTTCGTTGAACTGAACAAGCGAAATGAGAATGTCAGTCTAGTGCTAAAAA
GGGCGAATAGCAATCGGGCTAAATGCATGGCTTCGACTCCTAATTCTACCTTTAAAGGGCTTCGT
TTCGGCCTATGGAATCTCAGTTCTGTAAAAGCCGGTCTTTGAGAG
Right flanking sequence: Indices 372808 -- 373307
AACTAGATATCGGATGAAAGTGGTATGACAACCTCAAACCCCGGTCCCATGGGGAGAGTTTTCTA
TTTGAGTTTCGGAAAAGAAAGGAGAAAGGACTTTTGAAGCTTGCTGACTAGGGTTGGAAGCTAAA
TTCAGTCTTCGCCATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGCTAC
TTTCTTGTGGTAGTCATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGA
CCGCAATTGCAGGAATAGGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTTCTTTCGTT
TAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAA
ACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTT
AGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGG
Found at i:374440 original size:18 final size:18
Alignment explanation
Indices: 374419--374461 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
374409 CAACCTTGTT
374419 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
374437 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
374455 GACTATG
1 GACTATG
374462 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 373919 -- 374418
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 374462 -- 374961
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAGGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACGCTGAACGAGACATT
CGAAAACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCC
CGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAA
AGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTA
GGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAG
AGTGAGGGGAAGAGGGAGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGT
TCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACG
Found at i:399538 original size:24 final size:23
Alignment explanation
Indices: 399510--399576 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 23
399500 ACAAAAAAGA
399510 TTTGTCTAAGTCACTTCCTTTCTT
1 TTTGTCTAAGTCACTT-CTTTCTT
*
399534 TTTGTCCAAGT---TTCTTCTCTT
1 TTTGTCTAAGTCACTTCTT-TCTT
*
399555 TTTGTCTAACTCACTTTCTTTC
1 TTTGTCTAAGTCAC-TTCTTTC
399577 GTAAAAGCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
20 3 0.09
21 15 0.43
24 12 0.34
25 5 0.14
ACGTcount: A:0.12, C:0.25, G:0.07, T:0.55
Consensus pattern (23 bp):
TTTGTCTAAGTCACTTCTTTCTT
Left flanking sequence: Indices 399010 -- 399509
TTGGAAGATCCAAAACAAAAAAGAGTGGTATTTGCTAGAAACAACATAATGGAGGCAGTCAATCA
ATATGGATTGATCCTAAATCTGATTCAAATCCAATATAGTACCTATGGGTACATAAGAAATGTAT
TGACTCAATTCTTTTTAATGAATAGATCCGATCGCAACTTCGAATATGGAATTCAAAGGGATCCA
ATAGGAAATGGAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTT
ATCGAATTTGAAACAGAGTCAGAAGAAATGGTTCGATCCTCTTCTTTTTCTTTCTCGAACCGAGA
GATCCATGAATTGGGATCCTAATGCATATAGATACAAATGGTCTAATGGGAGCAAGAATTTCCAG
GAACATTTCATTTCTGAGCGGAAGAACCGTTTTCTTTTTCAAGTAGTGTTCTATCGATTACGTAT
TAATCAATATTCGATGGATTGGTCTGAGGTTATCGACAAAAAAGA
Right flanking sequence: Indices 399577 -- 400076
GTAAAAGCCAACCCTGAAAAGAAGAACTTTATGCCCCCTTTGTACACTTAGTTTAGGCAACTTCT
TTAAACGTGCCAAGTTGAAAAGCCAGGTAGAAACCCCACTCTACCCCCGCCGGATCCAGGAAATA
GAAAAGAAAGACAAGAAAAAAGCCCACCTCCGCATTCTCATGGCTGACTAGACCCGATCAACTCG
GAAAAGGAGTGAAACTGTCTTTTCTTCGAATGGCAATGCATCCGATTGTTTGCTAATAGACGACA
ACTTCTTCTTTGGATCAACCTTATTTATATATTCTATTATTACACCGACCCGCTCTTTAGAACGA
AATGAATGTTGGCATAGAGGCCATCTATGCGCAAGCCCCATTACGAAATGATACATCCGATACCG
AGTCTCCTTTTAGAGTAGCAGCCGGAGTGAGGCATCCGTGCCTAAACCATATTTTTTCTTCCATG
ACATTAGCATGGCTTATTCTCTTTTCTCGAATGGTGTATATTAGC
Found at i:448164 original size:34 final size:34
Alignment explanation
Indices: 448120--448248 Score: 240
Period size: 34 Copynumber: 3.8 Consensus size: 34
448110 AGCGGAATCG
*
448120 GGTTGAAAGGTAAGGATAGCGTGATTGGCCGATT
1 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
448154 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
1 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
448188 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
1 GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
*
448222 GGTTGGAAGGTAAGGATAGCATGATTG
1 GGTTGGAAGGTAAGGATAGCGTGATTG
448249 ACTGGTTGCG
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 93 1.00
ACGTcount: A:0.26, C:0.08, G:0.40, T:0.26
Consensus pattern (34 bp):
GGTTGGAAGGTAAGGATAGCGTGATTGGCCGATT
Left flanking sequence: Indices 447620 -- 448119
TATTCATATTAAATAAAAATCAATAAAATAAGTAAATAAAAATGAAGTAGAAGAACTCAGATTCC
AAATGAACCCACATATAAAATATAAAAGTGGGCTGGTCTGCTCATTTTTTGTGTTCGTACATTTA
TTCATTATTGCAATACAAATAACACCTCCACTATACTAGTTATGGAGGGGATTCGCGCCGGATGG
AACAAGGCGTTTTGAACCATATACTACTGTTGCTGGAATGAAACGCAGCCTCGGAACATAATTAT
GCTGCTTGCTGGGCCCTGATGGTGGAACTGGCATTTTTTGGGGGAAGAAAGCGGCCCCCTTTTGC
GGCGGAGTGGGCAGCATCGCTTTCCCTCGTGTAGCTATGATGCCATTCAGAAACAACACAAGAAG
AAGAAAAAAAAGCAGTATTTCGCGGATTCTTGCCATCACTGGAAAACAAATTGAGCTGTAGGCAT
CAAGGTAAGGGACCGAGATTATATACTGCTGCGGAAGCGGAATCG
Right flanking sequence: Indices 448249 -- 448748
ACTGGTTGCGGGTCCTTTGGATCATGGGCCACAGCTACTTGGGTAGAGACCGCTGAAGATCATTT
GGACAGGCCGAGGCTATATGGGCTTAGGCCTTTTGATGGCTGTCATTTTCTGGGCTATTTGGAAG
GGTTAACTAATTATGTATATAAGCAGTCAACCAAGATCGGGTGTTCTTTGCTTTTTCATGAGGAA
ATACTGCTCTTTTATTTCATTTGCTGTTGCTAACACATCTTTGGTCATGACGATGTAGATGGTTT
TACGGCATATGCTTACTTATTATATGGATTAGCTATCTTTAAGTGGTTTGGAGCAATCAATAATT
AGGTTAGCTAGGGCGAAGGGAGAAACTGCCTTGAAGGCAGCCATGGCTTCAGAGTCTGTAGTCCA
ACTGGGACTTATAATGGCCTTGCCCATGATTATGGAGATTGGACTAGAAAGAGGATTAACCGCAT
TGAGTGAAATGATCATCATGCAGTTGCAACTAGCAGCTGTTTTCT
Found at i:472282 original size:18 final size:18
Alignment explanation
Indices: 472242--472284 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
472232 ACCGCCCTGC
472242 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
472261 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
472278 CATAGTC
1 CATAGTC
472285 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 471742 -- 472241
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCTCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 472285 -- 472784
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:473922 original size:21 final size:21
Alignment explanation
Indices: 473896--473939 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
473886 ATATCTAGTT
473896 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
473917 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
473938 TG
1 TG
473940 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 473396 -- 473895
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 473940 -- 474439
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTTAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTCTCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCT
Found at i:475545 original size:25 final size:25
Alignment explanation
Indices: 475517--475566 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
475507 AAATTGGGGT
475517 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
475542 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
475567 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 475017 -- 475516
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTTCAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 475567 -- 476066
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATCCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAG
AATCCTCCAATTGCTAGGGAAAGAACATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Found at i:490157 original size:7 final size:7
Alignment explanation
Indices: 490145--490175 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
490135 GCCGGGAGTC
490145 TTTTTAT
1 TTTTTAT
490152 TTTTTAT
1 TTTTTAT
490159 TTTTTAT
1 TTTTTAT
490166 TTTTTAT
1 TTTTTAT
490173 TTT
1 TTT
490176 GAATAACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Left flanking sequence: Indices 489645 -- 490144
GAATATGCCAGCAAAGACCTTATTCAAGACTTGAGAAATTGCATCCATCACTGTCGTTTTTATGT
GGTTGAGTAAGACGGCGTAGCTTCCCAGGTTTATTGGGTTTTGGAATAAACGATCTATCTATACA
TGAAAAGGATAAAACCTCAAGAAAGAATACCTTAATGCCTTATCAATGGAAAGGTCTTCGAAACT
ATGAATCTTTCATCTCTTCTCCTCCCGCGATAAGGCCGTGTCTAAGGATGCTACTTCGGGCGGGC
GTGCTTCTTTCTATGGGGGCGCGCATCACTTTGGACGTGCTTTACTTTACCGGCAGATGCATGAG
TCGGAATGTAATAGCTAGGTCGTGGGAGGAGAATAAGCAAAATCTATTGCATAATCCAAGTAAAA
GTGAACATCTCGCTAATCAAAATCATCATCACGAGCAGTAGCTGAAACTGCTAGTCGATCTACCG
GATCAACTTCTGCCTACCCCGCCCGGTCAAAGATCGCCGGGAGTC
Right flanking sequence: Indices 490176 -- 490675
GAATAACTGGCGGGAAAAATGAATGAAAATAAAAGCGGAGGCCCGCCATCTGCTAGCATTGTGGT
TTGGAATCGATTCTTTATCAATAGCCCACCCTTTCTTTGAACCTTGTCAATGATCGAACTTAAAT
TAAAGATATGAACTGAGTGCCATTTGATGAGTAACTGAGAACAAAGGAGAGGGATATGGAAAGAA
TGAAGTAATGAAAGAGGAAGTCATTGCTAGTAGTAACGACTTGTCACGATCCATTGGTTCATATA
GAATCCATGTCCTAGGTGTATCAAAAAACATTCTTTTCACTAAGCGTATATAATAAAATAGAGTG
AAAGGGTCCACCCCGAAACCAAGGGGGTACTAACTAACAGCTGAGTCCTCTCCGAACCGCAGGAG
ATAGTTGCCCATCATACGGCTCACCAACTTCACTTGCCTCTATGGGGGGCTCGCTCCGGGCAGGT
TCGGATCACTTACAATACATGGCTCTACGAAGGAAGGGCTTGGGT
Found at i:503579 original size:12 final size:12
Alignment explanation
Indices: 503562--503591 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
503552 GGAGAGGCAT
*
503562 CTGACTTTCTTA
1 CTGACTTTCCTA
503574 CTGACTTTCCTA
1 CTGACTTTCCTA
503586 CTGACT
1 CTGACT
503592 GAATCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (12 bp):
CTGACTTTCCTA
Left flanking sequence: Indices 503062 -- 503561
TACCGCTCTCTACTATAAGAAAATCCAAGAAAGAGAGTCGCTCCATAATAAATAACTGCCATGAA
TTACACACACGCAAGTAGTGGCTCGGCTAGAGGAAGAAGCCGGAGCCTATGCACTACCGAAGAAT
GGACCTGATAGAATCAATCGATTGCATAAGATATACCAAAACCACTTACTGGTCTTGCATAAAGA
AAAAAAGAAGTCAAGTAGACTCGGAAAGAAAAGAGATAGTGAAACCCTCTCCCGCCTTTTCTATC
TATCCTTAGAAGTAGGACGAGTGTCCTACCTAATTGTTAGATTAGAATAATGGAGAAGGGAGAGG
TCTTCAAAAAAACCTATACTCCCACTTTCCTTTCTTTGAGATTTCCAAAAGGTGAGATTTCGCAA
CAAAAATTGGGTGGGCCCCATAAAGAAAGAGTGAGCGCTCACTCTTTCTTTATTTTATGGGGAGA
ACCGCATCTATTCAAAGTAAATGTTTCGGCCTGCAGGAGAGGCAT
Right flanking sequence: Indices 503592 -- 504091
GAATCACTTGAATCAGTTGAAGGAGGTTTCTACAGGAAGAGTTGCAACTCCGCGTCGAGGCGGGC
GGGGGTTCATGACGAGTGGGCATGAACTGTAACCAAAGAAAAGTAAGCCAACCACGAATTCCTGA
ACCGTAAAGGGAACCGCCCTGTAAAGAGCCTCGCCTAAAGGACCAGACCGGGAGCTGAGAACAAG
ATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACTTATTCATAAGGGATAGG
ACTGGCCTTATAGAAGGTTGGGGCTTGCTCGAAATCTGTCAAATACGAGCCCTTCTTTCTCTATT
CAATCCACGGCCTACCTCGATACACCTATGTCACAACGGCTTATTTTTTGAGTGAGGGAAGCCAG
AGCATTGGTCAAGAGAGAGAAAGAAGAAGAACTATAGATCGAGAAAGTCACATTAGCTACACCAG
ACCAGACACACTTTCTTTTTTTTACTATTTTTTGACTGACCGGAT
Done.