123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_065218
Parameters: 2 7 7 80 10 50 500
Length:  458897

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31176--31271	30	3.2	30	64	21	83	26	13	25	35	1.93
53304--53346	18	2.4	18	81	18	54	34	25	20	18	1.96
62825--62861	17	2.2	17	90	0	56	43	18	8	29	1.79
125057--125091	17	2.1	17	100	0	70	45	28	11	14	1.79
196124--196164	18	2.3	18	87	8	57	26	29	17	26	1.97
197626--197651	13	2.0	13	100	0	52	46	23	15	15	1.83
206366--206391	13	2.0	13	100	0	52	53	0	23	23	1.46
222742--222778	18	2.1	18	94	0	65	56	16	21	5	1.59
222780--222828	24	2.0	24	88	0	71	59	8	10	22	1.56
222803--222858	18	3.1	18	77	10	60	57	8	16	17	1.64
222788--222840	24	2.2	24	82	0	61	58	5	15	20	1.57
222790--222901	30	3.5	30	74	17	118	56	8	15	20	1.64
228016--228057	21	2.0	20	86	4	57	38	4	42	14	1.66
265289--265322	14	2.5	14	90	4	52	23	14	38	23	1.92
285898--285937	8	4.6	8	82	17	53	50	0	2	47	1.14
285890--285932	19	2.3	19	100	0	86	53	0	4	41	1.21
291950--292047	39	2.5	39	100	0	196	26	2	29	41	1.67
321773--321815	18	2.6	16	82	10	52	25	32	20	20	1.97
329963--330041	39	2.0	39	95	0	140	21	29	18	30	1.97
366359--366384	13	2.0	13	100	0	52	53	0	23	23	1.46
407555--407607	22	2.5	22	84	9	65	28	9	47	15	1.76
407572--407616	21	2.1	22	83	4	56	26	15	35	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431412--431451	18	2.5	15	78	21	53	40	12	32	15	1.84
431417--431451	18	1.9	18	100	0	70	40	11	31	17	1.85
442354--442391	20	1.9	20	89	10	60	31	34	10	23	1.89

Tables:   1

The End!