Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_062833
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 351183
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:49367 original size:17 final size:17
Alignment explanation
Indices: 49341--49373 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
49331 TTCCTATCTC
49341 TAAAGGGGC-TTACCCA
1 TAAAGGGGCTTTACCCA
49357 TAAAGGGGGCTTTACCC
1 TAAA-GGGGCTTTACCC
49374 TGACACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (17 bp):
TAAAGGGGCTTTACCCA
Left flanking sequence: Indices 48841 -- 49340
CTTGCGGATGTCCTAATCAGTTTCTCTGAGGCTCTCAAGCTGAGAGAAAGTGTTTGGATGATTTT
TGCATGGTTTCAGGGCGCTTTGAGAAATAGAATATCTTATGTTCTCCTAATATCGATAGGCAAGT
TGCTTATTTCTGTGTGCTCTAGGCTTGACAAGCTAAACAGAAAAACTTTTTTTGGAGAGGAAGAT
CCATCTTGCTAATTAGGATTTGGTGTGTAGACCAAAAGGTATGGGCGCCGGAGTTTCCTCTCGTT
GAGATTTTGGCAATCTCGTGCGGGTTGAAGCAAGCATTAGATATGGGCCTTTCTTCTCTGATGCT
GGAGTCAGACGCGACGCTCAGGCGGTTGTCTTTGCATTGAATGAAGAGGAGAGAAGCGCGCAAAC
AGTGTCGGACGGCAATGCCGACCGGCACTTCAACCACTGAAATAGCAGCAAATTCTTTTTAAAAT
TCTCAATGTTGCCTCAATAAAGCAGCTAGGCCGTTTTCCTATCTC
Right flanking sequence: Indices 49374 -- 49873
TGACACAAGTAGTCTCCGCGGCTATACTATATCAAATAGCCTATAGCGCTACTGTACTTGTTTTT
TTTTGTCTGGTTCTTTGCTAGCCAGACACCTGTCAACCAACCATCCTGCAACTATAAGTTCTTTC
GCAAGCCAAGCCGCCCGAGGAGAATCCGAGTGAAAGCAGCAACCAGCGGCGTGTGTCAGCAAACA
ACTCTAAGCTGAACTGATTACAGATAGGTAGTGCATTCTCTGAGGTGAGTGAAGTGCCCTACTTC
TATCTTACGGGTAGTGGTAGTGTAGCTGGGCTATTGATCCTGGTGAAGGAGCCCTATCAATCAAG
TAAAGGCGGGTGATAGAATAGCAAGCAGGGTAACTTACGCAAGCAAAGGAAAAGACCCTTCCGAC
GACGCAGCAGCCAACCACCTATTCGAGCCTGCAAAAATCTATGTGAACAACTAGGGGCCCGCGAT
TACTAAGGATCGATTGCTAAGAGCACTTTTAGATCAGCTAGCTTC
Found at i:79062 original size:16 final size:16
Alignment explanation
Indices: 79041--79071 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
79031 TAGTCTATCT
79041 ATAACTATAAGAAAGC
1 ATAACTATAAGAAAGC
79057 ATAACTATAAGAAAG
1 ATAACTATAAGAAAG
79072 AGGAGATCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.19
Consensus pattern (16 bp):
ATAACTATAAGAAAGC
Left flanking sequence: Indices 78541 -- 79040
GGAAGGAAAAATACGGGGTACTTTATTGCTTAGTCTAGCTTTCATGGAAGCTTTAACAATTTATG
GGCGCATTAGCTCTTTTATTTGCGAATCCTTTTGTTTAATCCTAAAAACACATATTTTTGTTTAT
TTCCGCTGCTCTTGTTTTTTTCAAATTCTTTTAATATTTAACTTCTACAATTAAATTACTTAGGA
ACAACAACCCACGGAAATCGCCGGTTTGAGGATGAGGATACAACTCATTTTTTCCTTTACCTTCT
GGACGAACTTTTTTTAGGAAGTATTGCAATTGTATTGTAACAAACGAGGTATTTCGCAACTGACC
CGTATAAGACCTGGTACCTAATTCGAATCGAATAAGTATCAGGCTTATTGGAAATTTCCAATTGA
AAAAAATCCATTAAAAACCATTTCTAAATCAATATATTTTTTGACTCAATTTAGTATTTTCTATT
TAGAAATAGGGAAATTCATAATAAAAGAATATAAATAGTCTATCT
Right flanking sequence: Indices 79072 -- 79571
AGGAGATCGTATGAAAAATGTAACCGATTCTTTCCTTTCCTTGGGTTATTGGCCATCCGCCGGAA
GTTTCGGGTTTAATACTGATATTTTTGCAACCAATCTAATAAATCTAAGCGTAGTGCTTGGTGTG
TTGATTTTTTTTGGAAGGGGGGTGTTAAGTGATTTATTAGATAATCGAAAACAGAGGATCTTGAA
GACTATTCAAAATTCAGAAGAATTACGCGAGGGGGCCCTAAACCAGTTAGAAAAAGCCCGGGCCC
GCTTACGGAAAGTAGAAATAGAAGCGAATCAGTTTCGAATGACTGGATACTCTGAAATAGAGCGA
GAAAAATTAAATTTGATTAATGCAACTTCTAAGACTTTGGAACAGTTAGAAAATTACAAAAATGA
AACCATTCATTTTGAACAACAAAGAGCAATTAATCAAGTTCGACAACGGGTTTTTCAACAAGCCT
TACAGGGGGCTTTAGGAACTCTCAATAGTTGTTTGAACAACGAAT
Found at i:100742 original size:31 final size:29
Alignment explanation
Indices: 100689--100764 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 29
100679 GTTGGAAAAA
* *
100689 AAGTAAAACTCCCTCTCCCTAAC-AGTCGAGT
1 AAGT-AAACTCCCT-TCCCTAACAAGT-AAGC
*
100720 AAGTGAAACTCCCTTACTCTAACAAGTAAGC
1 AAGT-AAACTCCCTT-CCCTAACAAGTAAGC
100751 AAGTAAACTCCCTT
1 AAGTAAACTCCCTT
100765 TGAATCTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
30 11 0.28
31 25 0.64
32 3 0.08
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.24
Consensus pattern (29 bp):
AAGTAAACTCCCTTCCCTAACAAGTAAGC
Left flanking sequence: Indices 100189 -- 100688
ACTTTAGGAGAGTCATATTTTCTGGTACGTCCATCTACTTATAAGCGGCCGGCTATGTTCTCTAA
ACTCATCTATTTCCTCTCGGCTCTCAGCGCAACGAGAAAGGATTCCCCAATAGCTGAGATTGGTA
CTAGAATTCGCGAATCTAGAGAGCACCAACGATGTTGACCGGGAGGGAAAGGAGCAATTAAAGCC
TTTCATCTCAATCAAATGACCGAAATGGAGACTCTATTCTTGTTGGCAAATGCAAATACGAATCC
ACTGATTTCCATCCCCATGTTCTCTGAGCAATGACCTTTGTTTCCAACAGTAATGGAGATTTGTT
GCAAACTGTCTCCGAATCCCGTGCTTTTCAAGTAAGCACCAACTCCTGTGATGTGTATTCCCCTC
CAGAGTCTGTCCTCAAACATGGCTTTCTTTGCCTTGACTTTATAAGTTTCATTCTCCACTAAGCT
TCTGAACTCTATTAATTTTTGAAAGATTTCGGACCGTTGGAAAAA
Right flanking sequence: Indices 100765 -- 101264
TGAATCTTATCCATTGAAGAAGACAGACTTCAAGACTGAAACCCGCCCTTTATTATTATATTATT
AGTAAGATAGGTTTGGAACTCGGGCTATAGTTATACTATATGCCCGGGCTTTTCTCGCTTGTTGC
TTTCTTTCTTCGCATGCTTTCGCGCATTTTTTAAAAATTTTTCTTCTGGCCCTATCTTGATCGAA
GTCCTGAAAGGCTTGGTTATGGTAGTCCCTCGGTCTATAAGATGTAGGCTTATCAAGCTGAGGGA
ATTGCATAGTCAAGAGGAACTAAGTGCTGGTGATCGGAGCGTGGGGAACTCAGGCCGCTGGTAGT
AGAGGCAATGCAATTGAACCAATTTCCTTACACTCGGAGAGACTTTACCTTTACTTAGAGAGGGG
CAGCAATACTACTATGCTCTTCGGTGCTCGTAGGTTGACTTCCCTTATGCACCCAGCCGCTTCAC
TAATGTGAATAGGTTATACAGAAGGGTGGGTTGGTTATATACTCT
Found at i:103311 original size:39 final size:39
Alignment explanation
Indices: 103268--103343 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
103258 TTTTCTATTC
* * *
103268 ACTCATGATCTGGCCTGGTCGACTCGATCATGATATTTT
1 ACTCATGATCTGGCCCGGTCGACCCAATCATGATATTTT
*
103307 ACTCATGATCTGGCCCGGTCGGCCCAATCATGATATT
1 ACTCATGATCTGGCCCGGTCGACCCAATCATGATATT
103344 GAAGAATGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (39 bp):
ACTCATGATCTGGCCCGGTCGACCCAATCATGATATTTT
Left flanking sequence: Indices 102768 -- 103267
CACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCTATTTTTGACCTATTGGTCCT
AGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAATTCCATA
AACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCATAC
CATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCCATT
CTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACCATC
CGCTAGAGGTTGTAACAATCCGAACGCTCCCACTACATCAGGACCCTTTCGACGTTGCACAAAAG
CCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATTCCA
AGTATTTCGGCTGGAACAGCTATGTACGTTTTCGATTTTCTATTC
Right flanking sequence: Indices 103344 -- 103843
GAAGAATGGGACCTTTTCTCGAAAAACTCCGGATCAAGTTGAAGGTGGTGCAACATCGAATCTTG
TTACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGGTTCTGAA
AGAAAGTAAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGA
TTTGTGGTTGAGTCAATAAGGGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTCCGCTGCCTGCG
TTCTTCTTCGTGTCCGTACGTATCGCAAAGCTGGTCGACGCCAGCTGTAATGGTTCATTTCGGGA
GTTTGAACACCATCCCAAAAATACAACCCTGTCAAAGGTATTTAACCTTCCTTCCTTCTGAGTGG
AAATCCAATCCCGTTTTGTCTTTTTTGCATAAATACCAAACTAATAATATATATATATATTTCTT
TTAAACCCGTTCTTCCGACCCCTCCAAAAATGACCTTCTCCAGTG
Found at i:225131 original size:22 final size:22
Alignment explanation
Indices: 225105--225148 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
225095 TCATGCCATA
225105 AAAAAATTTAATATGTATAAAG
1 AAAAAATTTAATATGTATAAAG
225127 AAAAAATTTAATATGTATAAAG
1 AAAAAATTTAATATGTATAAAG
225149 GGATCCCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (22 bp):
AAAAAATTTAATATGTATAAAG
Left flanking sequence: Indices 224605 -- 225104
CGGCCGCAACGAACTCTAGAAGCTAGGGCTTTGGACACGAATACTATTCCGTTCTCCGCGGCCTT
AGAAGATTGAACGTCGACTTATCTTATTGCCGTTCAATCTAAGACAGCGCCGATAGCTTGTAGTG
AACAGCCCCCTTATGAAACCAACCGAAAGCAGCCTTTGCTACTTAAGTACTTAAGGTTTGGACCC
CTTGCAACTATGATAGAAAGCCGTTTGCGTGTCCTTTGGACCCTTCGCCCTTAGTTTTGAATCAA
AGTAGGTCGCGACTGTTGTATTTCAGTCGGTCGGGTGGCTTATACGACAGCTCCGCTTCCTCGTC
TTGCTTCTGGCAAAGCTTCTACTTTGCTTGCTTCTCTCGCGCTTGCTTGCGCGAAGGCTTAAAGT
CCTTTTCGCTAGGTCCAAAAGCTTCCGTCAAAGCGAAAGATCTGATCCAACAGAAATCCCGCATA
TTGAGCGCAGCTGATATGCGGCTACAGCTAGGCGATCATGCCATA
Right flanking sequence: Indices 225149 -- 225648
GGATCCCCTAGATATACAGACAGAATAGATATTCATGGATAGACAGACATTCCATTAATTCTTAG
TTTTGGGGCTGAAAAAGCTCGTCGATCCAAATGAATCATTCTTCTGGTCTCTATTCGCCCCCCGC
CCCGAAACTGACCCGCAGCACAGCGCCCATTCGCTTCGCGCGCGGGAAGGCAACGAAGTTCAGTT
CATGAGACCGCGGCGGAGTGGAGCAGCCGCGATACGAAGTTCCTTACCTTAGCTGGATCTCGCTG
GTGCCACCTAAAGGGTAGGTAGGCGACGGATGTGTGACGTTTGGAGTTGTCGTTCGTGCACCTGT
CCCCAATGGAAGAATGAGTGATCCGTTCCCCTGCGGATCATGGCTTTCCCACTTGGTCCCCGATG
GCCAGCGGGGGATTCGGTATAGCAACTCACGTTCGTTTGCGCTGCGCGTTCCCGCTGGACTGGAC
ACGTGTTAGCTGTAGGAAGTATGGTTCCGAAAGTGACTTCGGTTT
Found at i:243498 original size:27 final size:27
Alignment explanation
Indices: 243467--243610 Score: 198
Period size: 27 Copynumber: 5.3 Consensus size: 27
243457 AATAATACCA
243467 CTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTCGTAAAAGAAGTAATCCG
* * ** *
243494 CTACAAACTAGTCAAATCAGTAATCAG
1 CTACAAACTCGTAAAAGAAGTAATCCG
243521 CTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTCGTAAAAGAAGTAATCCG
243548 CTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTCGTAAAAGAAGTAATCCG
* * ** *
243575 CTACAAACTAGTCAAATCAGTAATCAG
1 CTACAAACTCGTAAAAGAAGTAATCCG
243602 CTACAAACT
1 CTACAAACT
243611 AGTCAAATCA
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.20
Consensus pattern (27 bp):
CTACAAACTCGTAAAAGAAGTAATCCG
Left flanking sequence: Indices 242967 -- 243466
AAAACTACGATTAAAGCTGGAGTAGATAGATCGACCAGGCAAACTTACCCTTCCTAGCTTGGACA
GGATCAAGTCATTCGTAGTTCGCAAAGGATTCAATCCAGCCCCAAGCGTACCAGGGGCTAACCTG
TTTACCGGATCCTTAGAGGTCTGCCCGTCCGGCGGCGGTCCCTCCCAATCGGTCATTAGGGCGGC
ACCCTGCTTTCCGGGTGGCCCTCAGAAAAAGGGCGTCGCCCTTGCTTAACTTGTTAATGAAAGCG
AGATGCCGCTTAAGCGGTGGGGCCCTCCTCACCTCTCCCCACCCCTTTCTCACGGAAAGCTATCC
AGTAAATCAGAAGACTCACCATGAGAAAGGCCTTCCGTTCACTGCGTGAAAGAAGTCCTACTCTT
TCACTGCGCTACTTCGGACCCTCTCTAGAAATTCAAAGGCGGCCTACTTGCTTTCCTTTCGGGCA
GCTGCCCCTCAACCGCTTTAGGGGACTTTCAGTCCAATAATACCA
Right flanking sequence: Indices 243611 -- 244110
AGTCAAATCAGTAATCCATAGAAAGATTTGGCGCCGCTCACTAAATTCTGTGGTTAATGACATTT
GTCGATGATATTATTAGGAATCGCCTGGTAGAATAGGCCGCACTACAAACTCCCCATCGGCAATT
ATGTATTCGATGGGAAGACTGCCATTACTTAGCAAGCAGGCGAACGCTACTACCAGGTGCCCCGA
GAGCATCATGAAGATTAGATGTACCACAATACACGCAATAAGGGTGAAGGTTCCCTTTTTTGAAA
ATAACGTAAGAGTGAAATAAATTAAATTAAAATCGAACAAATAAAATAGAACTATAAAACATACT
GCATACCACTTGGCATTCTCATATGCGAAGGCCGTAGCATAAGTAGACAGTGGTTTTAGTAGTTC
GATCTCTATGCCACTCCAAAGGGTAGCTTTAAATGAAACTGGGTTTCCCCAACGAAGAAAGATCC
CCGTTAGAATTAGACAATTGTGCAATAGAATATAGAATTCCGCAC
Found at i:243611 original size:27 final size:27
Alignment explanation
Indices: 243467--243627 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
243457 AATAATACCA
*
243467 CTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTAGTAAAAGAAGTAATCCG
* ** *
243494 CTACAAACTAGTCAAATCAGTAATCAG
1 CTACAAACTAGTAAAAGAAGTAATCCG
*
243521 CTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTAGTAAAAGAAGTAATCCG
*
243548 CTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTAGTAAAAGAAGTAATCCG
* ** *
243575 CTACAAACTAGTCAAATCAGTAATCAG
1 CTACAAACTAGTAAAAGAAGTAATCCG
* **
243602 CTACAAACTAGTCAAATCAGTAATCC
1 CTACAAACTAGTAAAAGAAGTAATCC
243628 ATAGAAAGAT
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.20
Consensus pattern (27 bp):
CTACAAACTAGTAAAAGAAGTAATCCG
Left flanking sequence: Indices 242967 -- 243466
AAAACTACGATTAAAGCTGGAGTAGATAGATCGACCAGGCAAACTTACCCTTCCTAGCTTGGACA
GGATCAAGTCATTCGTAGTTCGCAAAGGATTCAATCCAGCCCCAAGCGTACCAGGGGCTAACCTG
TTTACCGGATCCTTAGAGGTCTGCCCGTCCGGCGGCGGTCCCTCCCAATCGGTCATTAGGGCGGC
ACCCTGCTTTCCGGGTGGCCCTCAGAAAAAGGGCGTCGCCCTTGCTTAACTTGTTAATGAAAGCG
AGATGCCGCTTAAGCGGTGGGGCCCTCCTCACCTCTCCCCACCCCTTTCTCACGGAAAGCTATCC
AGTAAATCAGAAGACTCACCATGAGAAAGGCCTTCCGTTCACTGCGTGAAAGAAGTCCTACTCTT
TCACTGCGCTACTTCGGACCCTCTCTAGAAATTCAAAGGCGGCCTACTTGCTTTCCTTTCGGGCA
GCTGCCCCTCAACCGCTTTAGGGGACTTTCAGTCCAATAATACCA
Right flanking sequence: Indices 243628 -- 244127
ATAGAAAGATTTGGCGCCGCTCACTAAATTCTGTGGTTAATGACATTTGTCGATGATATTATTAG
GAATCGCCTGGTAGAATAGGCCGCACTACAAACTCCCCATCGGCAATTATGTATTCGATGGGAAG
ACTGCCATTACTTAGCAAGCAGGCGAACGCTACTACCAGGTGCCCCGAGAGCATCATGAAGATTA
GATGTACCACAATACACGCAATAAGGGTGAAGGTTCCCTTTTTTGAAAATAACGTAAGAGTGAAA
TAAATTAAATTAAAATCGAACAAATAAAATAGAACTATAAAACATACTGCATACCACTTGGCATT
CTCATATGCGAAGGCCGTAGCATAAGTAGACAGTGGTTTTAGTAGTTCGATCTCTATGCCACTCC
AAAGGGTAGCTTTAAATGAAACTGGGTTTCCCCAACGAAGAAAGATCCCCGTTAGAATTAGACAA
TTGTGCAATAGAATATAGAATTCCGCACAGAGAAAAATGAAAATC
Found at i:243624 original size:81 final size:81
Alignment explanation
Indices: 243467--243627 Score: 286
Period size: 81 Copynumber: 2.0 Consensus size: 81
243457 AATAATACCA
*
243467 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCAGCTACAAACTCG
1 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCAGCTACAAACTAG
243532 TAAAAGAAGTAATCCG
66 TAAAAGAAGTAATCCG
243548 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCAGCTACAAACTAG
1 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCAGCTACAAACTAG
* **
243613 TCAAATCAGTAATCC
66 TAAAAGAAGTAATCC
243628 ATAGAAAGAT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.20
Consensus pattern (81 bp):
CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCAGCTACAAACTAG
TAAAAGAAGTAATCCG
Left flanking sequence: Indices 242967 -- 243466
AAAACTACGATTAAAGCTGGAGTAGATAGATCGACCAGGCAAACTTACCCTTCCTAGCTTGGACA
GGATCAAGTCATTCGTAGTTCGCAAAGGATTCAATCCAGCCCCAAGCGTACCAGGGGCTAACCTG
TTTACCGGATCCTTAGAGGTCTGCCCGTCCGGCGGCGGTCCCTCCCAATCGGTCATTAGGGCGGC
ACCCTGCTTTCCGGGTGGCCCTCAGAAAAAGGGCGTCGCCCTTGCTTAACTTGTTAATGAAAGCG
AGATGCCGCTTAAGCGGTGGGGCCCTCCTCACCTCTCCCCACCCCTTTCTCACGGAAAGCTATCC
AGTAAATCAGAAGACTCACCATGAGAAAGGCCTTCCGTTCACTGCGTGAAAGAAGTCCTACTCTT
TCACTGCGCTACTTCGGACCCTCTCTAGAAATTCAAAGGCGGCCTACTTGCTTTCCTTTCGGGCA
GCTGCCCCTCAACCGCTTTAGGGGACTTTCAGTCCAATAATACCA
Right flanking sequence: Indices 243628 -- 244127
ATAGAAAGATTTGGCGCCGCTCACTAAATTCTGTGGTTAATGACATTTGTCGATGATATTATTAG
GAATCGCCTGGTAGAATAGGCCGCACTACAAACTCCCCATCGGCAATTATGTATTCGATGGGAAG
ACTGCCATTACTTAGCAAGCAGGCGAACGCTACTACCAGGTGCCCCGAGAGCATCATGAAGATTA
GATGTACCACAATACACGCAATAAGGGTGAAGGTTCCCTTTTTTGAAAATAACGTAAGAGTGAAA
TAAATTAAATTAAAATCGAACAAATAAAATAGAACTATAAAACATACTGCATACCACTTGGCATT
CTCATATGCGAAGGCCGTAGCATAAGTAGACAGTGGTTTTAGTAGTTCGATCTCTATGCCACTCC
AAAGGGTAGCTTTAAATGAAACTGGGTTTCCCCAACGAAGAAAGATCCCCGTTAGAATTAGACAA
TTGTGCAATAGAATATAGAATTCCGCACAGAGAAAAATGAAAATC
Found at i:243627 original size:54 final size:54
Alignment explanation
Indices: 243467--243627 Score: 232
Period size: 54 Copynumber: 3.0 Consensus size: 54
243457 AATAATACCA
*
243467 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCAG
1 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCCG
* * **
243521 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTCGTAAAAGAAGTAATCCG
1 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCCG
* * ** *
243575 CTACAAACTAGTCAAATCAGTAATCAGCTACAAACTAGTCAAATCAGTAATCC
1 CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCC
243628 ATAGAAAGAT
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.44, C:0.23, G:0.12, T:0.20
Consensus pattern (54 bp):
CTACAAACTCGTAAAAGAAGTAATCCGCTACAAACTAGTCAAATCAGTAATCCG
Left flanking sequence: Indices 242967 -- 243466
AAAACTACGATTAAAGCTGGAGTAGATAGATCGACCAGGCAAACTTACCCTTCCTAGCTTGGACA
GGATCAAGTCATTCGTAGTTCGCAAAGGATTCAATCCAGCCCCAAGCGTACCAGGGGCTAACCTG
TTTACCGGATCCTTAGAGGTCTGCCCGTCCGGCGGCGGTCCCTCCCAATCGGTCATTAGGGCGGC
ACCCTGCTTTCCGGGTGGCCCTCAGAAAAAGGGCGTCGCCCTTGCTTAACTTGTTAATGAAAGCG
AGATGCCGCTTAAGCGGTGGGGCCCTCCTCACCTCTCCCCACCCCTTTCTCACGGAAAGCTATCC
AGTAAATCAGAAGACTCACCATGAGAAAGGCCTTCCGTTCACTGCGTGAAAGAAGTCCTACTCTT
TCACTGCGCTACTTCGGACCCTCTCTAGAAATTCAAAGGCGGCCTACTTGCTTTCCTTTCGGGCA
GCTGCCCCTCAACCGCTTTAGGGGACTTTCAGTCCAATAATACCA
Right flanking sequence: Indices 243628 -- 244127
ATAGAAAGATTTGGCGCCGCTCACTAAATTCTGTGGTTAATGACATTTGTCGATGATATTATTAG
GAATCGCCTGGTAGAATAGGCCGCACTACAAACTCCCCATCGGCAATTATGTATTCGATGGGAAG
ACTGCCATTACTTAGCAAGCAGGCGAACGCTACTACCAGGTGCCCCGAGAGCATCATGAAGATTA
GATGTACCACAATACACGCAATAAGGGTGAAGGTTCCCTTTTTTGAAAATAACGTAAGAGTGAAA
TAAATTAAATTAAAATCGAACAAATAAAATAGAACTATAAAACATACTGCATACCACTTGGCATT
CTCATATGCGAAGGCCGTAGCATAAGTAGACAGTGGTTTTAGTAGTTCGATCTCTATGCCACTCC
AAAGGGTAGCTTTAAATGAAACTGGGTTTCCCCAACGAAGAAAGATCCCCGTTAGAATTAGACAA
TTGTGCAATAGAATATAGAATTCCGCACAGAGAAAAATGAAAATC
Found at i:255868 original size:18 final size:18
Alignment explanation
Indices: 255841--255895 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
255831 ACAATACTAA
255841 TCAAACATAGTAATTAAC
1 TCAAACATAGTAATTAAC
* *
255859 TCAATA-ATAGCATACTAA-
1 TCAA-ACATAGTA-ATTAAC
255877 TCAAACATAGTAATTAAC
1 TCAAACATAGTAATTAAC
255895 T
1 T
255896 TAATGATAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
17 5 0.17
18 19 0.66
19 5 0.17
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.29
Consensus pattern (18 bp):
TCAAACATAGTAATTAAC
Left flanking sequence: Indices 255341 -- 255840
GGCGAAAGTGGGTCCGTTAGTTGATTCGTTGGAAGAGAAAGGTGCTAGCCCTATGTTAGAAAGCA
AAGTCCCAGAAGTAAGGCAAAGCCTGGTCCAAGAGACGTAGGTGCCTAGAACGAAGACAAGTCTG
GGGTTTGACAGCCGCCGGCGAAGGATTTGTTGAGGAAGATGATGTGTAGAGATGTTTCTAGGAGA
CTATCTGCAGAGGAAGCACTTAGACACCCATGGATCTTGAGTGGTGGAGAAGCAAATCCAATGGA
CTGATTCTGACCCCAAGAAACTTCAAGAGAAGCATTCAAAAGGATGCAACCAAGTATACAAGTCC
TAGCCAATGTATGTATGTAATAGGTTTGAGAAGACCCTTTTTGAAGCTAGGTAGCTGAGGAAGGG
TTGTTCTTTGTAGTTTTAATTAATTAGTACTTTTTTTGTAATGAAATTGTAAATAGAATGGGTTT
GAGGATACTAATCAAACATCAGTTCTTACTTCTTGACAATACTAA
Right flanking sequence: Indices 255896 -- 256395
TAATGATAGCATACGTACTAATCAAACATAAGATCTTAACAATACTAATCAACATCAGTTCTTGA
CAGTACTAATCAAACATCTCACTTCTTAACATGCAGTAGTAATTAAACATAAACCATAGTAGTTC
TTAACTAATTAATTTATGACCAAGTAATCTACTTGCCAAATAGAATGTTGAAGACATTCTTAACA
ATACGTCCCTTCCTTCCCTTGAGAACCTCCCTTACTTGATTCTCCTCCGCCACAAAACCCTTCCG
CTTCATCTCCTCGAAAGACCTCCTCCCCTCCGCCACCTTCTCCCGACGAGCAAACGCCTTAAACA
CAGCTGTGTACGCCACTGCATCGGGACGCAACGCCATGTCCATCATCTCCATCAGATACTTCTTC
GCATCTTCAAGAAACTTCACGTCCGGATCATCCGCCATCGCCTTGATGAGAATCCTGTAAGTGTA
GCTGTTAGGGCGGATCCCGTAGTTCAACATGCGCCGGTACACCTT
Found at i:255881 original size:36 final size:36
Alignment explanation
Indices: 255834--255909 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
255824 CTTCTTGACA
255834 ATACTAATCAAACATAGTAATTAACTCAATAATAGC
1 ATACTAATCAAACATAGTAATTAACTCAATAATAGC
* *
255870 ATACTAATCAAACATAGTAATTAACTTAATGATAGC
1 ATACTAATCAAACATAGTAATTAACTCAATAATAGC
255906 ATAC
1 ATAC
255910 GTACTAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.49, C:0.16, G:0.07, T:0.29
Consensus pattern (36 bp):
ATACTAATCAAACATAGTAATTAACTCAATAATAGC
Left flanking sequence: Indices 255334 -- 255833
GAGAGAAGGCGAAAGTGGGTCCGTTAGTTGATTCGTTGGAAGAGAAAGGTGCTAGCCCTATGTTA
GAAAGCAAAGTCCCAGAAGTAAGGCAAAGCCTGGTCCAAGAGACGTAGGTGCCTAGAACGAAGAC
AAGTCTGGGGTTTGACAGCCGCCGGCGAAGGATTTGTTGAGGAAGATGATGTGTAGAGATGTTTC
TAGGAGACTATCTGCAGAGGAAGCACTTAGACACCCATGGATCTTGAGTGGTGGAGAAGCAAATC
CAATGGACTGATTCTGACCCCAAGAAACTTCAAGAGAAGCATTCAAAAGGATGCAACCAAGTATA
CAAGTCCTAGCCAATGTATGTATGTAATAGGTTTGAGAAGACCCTTTTTGAAGCTAGGTAGCTGA
GGAAGGGTTGTTCTTTGTAGTTTTAATTAATTAGTACTTTTTTTGTAATGAAATTGTAAATAGAA
TGGGTTTGAGGATACTAATCAAACATCAGTTCTTACTTCTTGACA
Right flanking sequence: Indices 255910 -- 256409
GTACTAATCAAACATAAGATCTTAACAATACTAATCAACATCAGTTCTTGACAGTACTAATCAAA
CATCTCACTTCTTAACATGCAGTAGTAATTAAACATAAACCATAGTAGTTCTTAACTAATTAATT
TATGACCAAGTAATCTACTTGCCAAATAGAATGTTGAAGACATTCTTAACAATACGTCCCTTCCT
TCCCTTGAGAACCTCCCTTACTTGATTCTCCTCCGCCACAAAACCCTTCCGCTTCATCTCCTCGA
AAGACCTCCTCCCCTCCGCCACCTTCTCCCGACGAGCAAACGCCTTAAACACAGCTGTGTACGCC
ACTGCATCGGGACGCAACGCCATGTCCATCATCTCCATCAGATACTTCTTCGCATCTTCAAGAAA
CTTCACGTCCGGATCATCCGCCATCGCCTTGATGAGAATCCTGTAAGTGTAGCTGTTAGGGCGGA
TCCCGTAGTTCAACATGCGCCGGTACACCTTGAGAACATCCCTCG
Found at i:255958 original size:26 final size:27
Alignment explanation
Indices: 255911--255978 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 27
255901 ATAGCATACG
*
255911 TACTAATCAAACATAAGATCTTAACAA
1 TACTAATCAAACATCAGATCTTAACAA
* * *
255938 TACTAATC-AACATCAGTTCTTGACAG
1 TACTAATCAAACATCAGATCTTAACAA
255964 TACTAATCAAACATC
1 TACTAATCAAACATC
255979 TCACTTCTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 22 0.61
27 14 0.39
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
TACTAATCAAACATCAGATCTTAACAA
Left flanking sequence: Indices 255411 -- 255910
CCAGAAGTAAGGCAAAGCCTGGTCCAAGAGACGTAGGTGCCTAGAACGAAGACAAGTCTGGGGTT
TGACAGCCGCCGGCGAAGGATTTGTTGAGGAAGATGATGTGTAGAGATGTTTCTAGGAGACTATC
TGCAGAGGAAGCACTTAGACACCCATGGATCTTGAGTGGTGGAGAAGCAAATCCAATGGACTGAT
TCTGACCCCAAGAAACTTCAAGAGAAGCATTCAAAAGGATGCAACCAAGTATACAAGTCCTAGCC
AATGTATGTATGTAATAGGTTTGAGAAGACCCTTTTTGAAGCTAGGTAGCTGAGGAAGGGTTGTT
CTTTGTAGTTTTAATTAATTAGTACTTTTTTTGTAATGAAATTGTAAATAGAATGGGTTTGAGGA
TACTAATCAAACATCAGTTCTTACTTCTTGACAATACTAATCAAACATAGTAATTAACTCAATAA
TAGCATACTAATCAAACATAGTAATTAACTTAATGATAGCATACG
Right flanking sequence: Indices 255979 -- 256478
TCACTTCTTAACATGCAGTAGTAATTAAACATAAACCATAGTAGTTCTTAACTAATTAATTTATG
ACCAAGTAATCTACTTGCCAAATAGAATGTTGAAGACATTCTTAACAATACGTCCCTTCCTTCCC
TTGAGAACCTCCCTTACTTGATTCTCCTCCGCCACAAAACCCTTCCGCTTCATCTCCTCGAAAGA
CCTCCTCCCCTCCGCCACCTTCTCCCGACGAGCAAACGCCTTAAACACAGCTGTGTACGCCACTG
CATCGGGACGCAACGCCATGTCCATCATCTCCATCAGATACTTCTTCGCATCTTCAAGAAACTTC
ACGTCCGGATCATCCGCCATCGCCTTGATGAGAATCCTGTAAGTGTAGCTGTTAGGGCGGATCCC
GTAGTTCAACATGCGCCGGTACACCTTGAGAACATCCCTCGTCCTTCCGGCGCTGGCGTACTCCT
CCATGACGCCGGTGTAGATCAGGCATGAAACCCTGGTTGAAATGA
Found at i:280381 original size:11 final size:11
Alignment explanation
Indices: 280365--280389 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
280355 GGTTGTATGC
280365 TTTCGATTTTA
1 TTTCGATTTTA
280376 TTTCGATTTTA
1 TTTCGATTTTA
280387 TTT
1 TTT
280390 TTCGCTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTCGATTTTA
Left flanking sequence: Indices 279865 -- 280364
TACTACTAGTGACGCATTGTTGATTTCGTTAACGCTACAACCGAATGCTTTATAGAAGTAATGGC
AGGTGAATTAGTAGAATTTGAAGAAGGTACGATAGGCATTGAATTGCCTACAAAAGGAAGTTGCT
GTCGGTATGACAAGACCGCCGTGACACTCATCTATTCAACCCTTCTCGAATGTGATCCCAACTGC
TCGTAGCCATAGATAGTCAAAGCTGAGGGGAAAGCTGCAGTCGTTCCTTACGGATGAGACAGCCC
CACTCTCTTGATTGCTGTCTGGCTTTGCTTTGTTGGTTGCTTTCTTCTTTCAAAATTATCTGGGC
GAAAAGAATGTTCTCTTCTTCCACACTCCTCCAGCTGGTAGGCATCTGAAGCTTTCCACTTCATC
TCACTCTCCGTTGTTTGCTATTCAAGAAGAGTTCACTTTCCGAGGGCTTCTCTCTTTGTTTCCTA
AGTCGACCCAGAGCGATAGATAGGCAGAGGATCGTGGTTGTATGC
Right flanking sequence: Indices 280390 -- 280889
TTCGCTGTGAAGAGAGCCTTAGGAGTAAGTTGAGTTTGGTCTCCCGCTGCGATTGGCCGATAGTG
ATGAGAAGACTGCTAAGTCAAGAGCAGGCTTCAAGGTCCCGAAGTTGCTAAAGTCACGAGGTTGT
GATGCAGGTTTTTACTCTGTTGATAAGGTACTTAGGGGAATTCGATAGAATGAGGGAGAGGAATT
CAAGGATAGCCACCCGGGAAGGAAGGCTGTGAGGCGCATTCTAGTGTGAATAAAGATGGAGCTGC
TGCGGCTGGCTCTTATTGAGGTCACTCTATGTAGATGTGCCCAATCAATTCTTCTTATATATTTG
ATTGATAGCTTTTTAGTGAAAGGTAGCCAAGGAGTTAAATATAGGGCTTTGAGGTTCAGGATCGT
AAAGTGGGCTGGTGCCTTAGTGAAAGTTAGTGTATTTAAGTCAGTTTTAGTGCCCGGTAGTTCGG
AAAGGTGGAGAGGATAAAGATAGTTCAAGGTAGGGCGGATCAAAA
Found at i:287873 original size:24 final size:24
Alignment explanation
Indices: 287846--287893 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
287836 ACCTTCCTTA
287846 TCCAACAAGCAGGAACCATACAAG
1 TCCAACAAGCAGGAACCATACAAG
287870 TCCAACAAGCAGGAACCATACAAG
1 TCCAACAAGCAGGAACCATACAAG
287894 AAGACTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.08
Consensus pattern (24 bp):
TCCAACAAGCAGGAACCATACAAG
Left flanking sequence: Indices 287346 -- 287845
CATTCCCGATGCACTCGGCAAGCCTCCAATTCCCACAGTCACATTCGGCCGCCTCCTCCGGTCGC
TACATCAGCTACTCCAGAGATGATCTCGATAGCGAAATTGGGAGTGGTGACTTTATGAACTACAC
GGCCTCCGACACCAGCCAATGGATCCATCCATTTCGCAGAAGGTTGAAGAGCAGTATGTGTCCAA
TTCGCTCTTCACTGGGGGATTCAACAGTCTTACCCGAGCTCATCTTATGGACAAGGTGATTGAAT
CCGAAGCCAACCATCCTCAGATGGCGTCAAAGGGTCATCATGTGCCATTCCTGGGTGTGATGCAA
AGGTGATGAGCGATCAACGCGGGGAGGACATTCTACCTTGTGGGTGTGATAAGGAGTAGGTGAGG
ACTCACTGACCTGAGCGATTTCGATTCAATCTTTGTCGAGATTGTTATACTGATGCTGTCAAAAC
AGGGGGTGGTAGCATGTCCTTTAGCAACGCTAGCCACCTTCCTTA
Right flanking sequence: Indices 287894 -- 288393
AAGACTGATTTGGATGAAATGGCTATGGAGAGTGCATTGCCTCCGCTTCCCCTGCCTCTGCCTAA
TGGGATGTCTAAAATGGAGAGGAGGTTGTCACTCATGAAGTCAACAAAGTAGGTCCTGATGAGGA
GTCAAACTGGCGATTTGGATCACGGCTCTTTGAAACCAAGGGAACTTATGGCTATGGGAATGCTA
TATGGTCCAAGGTTTCGGTTTAGGAAATGGAAAAGACTACGATGTCGTTGAACCAACTGAGCTGA
TGAACAAACCATGGAGGCCTCTCACCCGGAAACTAAAGATACCTGCAGCTATTCTGAGTACCTAT
AGGTACATCTCTTGCAGTATTTTGTCCCCGCACCTTAACATGGATTATGGAAATCTCATAACAAG
TGAGTCTCCCTATAGCTAGGTATAGCGATATGCTAGTTTCCTATATACACTTACACTTAAAATGA
TTGAAAGACCACCATCCATTATGTTTTTGTCATTGAGATGCATCT
Found at i:332619 original size:18 final size:18
Alignment explanation
Indices: 332598--332634 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
332588 GTCACGGCCG
332598 ATATCGTCACTATCATCA
1 ATATCGTCACTATCATCA
332616 ATATCGTCACTATCATCA
1 ATATCGTCACTATCATCA
332634 A
1 A
332635 CAAGAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATCGTCACTATCATCA
Left flanking sequence: Indices 332098 -- 332597
TACTAATCGATAGGGCCTCATCGGTAAGTGCTACAAGATCTCGTACATTGGAACCCATGGTTATG
GACCCGAATCCATTAGTATAGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGAAAGAGT
GAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTAATTTAT
TCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACAAGAATATTT
CTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAAACCGAGGGATAAGTAATT
CGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCTTTTG
CTAATTCGAATTGAAGGGTGATATAAAATAGGTCTATTTCCGGCATCATATCCATAGTTAGCGCA
TTCATCATAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACGGCCG
Right flanking sequence: Indices 332635 -- 333134
CAAGAAAACCCTTGGGCTTGTTATCCAGGAACTTGTTCAGAAATACTGTAATGAAAGGAACATAG
GAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAAT
ACCCCTAGAGAGGGATAGGGCTAAACGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAAC
TATTAGCCCCACAGGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGCCTT
TCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTA
TCGTAAGTAAATTGCTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGAT
CACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGA
ACCAAGAATTCTCTTTCTTTATCACCAATCGAATCACTGTTCGAG
Found at i:344361 original size:18 final size:18
Alignment explanation
Indices: 344321--344363 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
344311 ACCGCCCTGC
344321 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
344340 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
344357 CATAGTC
1 CATAGTC
344364 AACAAGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 343821 -- 344320
GAAAGCTTTTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACA
ACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACACGA
TCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGA
ACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACC
ATGCCTGTCTGTTGGAGCGAATTGAATGATCGGGCCGAGGGCAGCCCCCTCTTCCCCTCACTCTC
CTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTAC
GCGACTGGCGCTTCAAAAGACGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCCTTTACTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 344364 -- 344863
AACAAGGTTTAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:350899 original size:15 final size:15
Alignment explanation
Indices: 350879--350915 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
350869 AGGAATGGGT
350879 GAACGGGAAACCGGA
1 GAACGGGAAACCGGA
350894 GAACGGGAAACCGGA
1 GAACGGGAAACCGGA
*
350909 GGACGGG
1 GAACGGG
350916 GCCTGTTGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.35, C:0.19, G:0.46, T:0.00
Consensus pattern (15 bp):
GAACGGGAAACCGGA
Left flanking sequence: Indices 350379 -- 350878
GGTAACACCGGAAGGATGTTATTTAAAACCAATAACAACGTAAAAAACACGTGGTTTTGCATGTA
GGTGAAGGGTCAAATTGATCAAAAAAGGAACGCTCTCACTAAGTAAAACGGCTTTTCTAGGTTTT
GTAGCTAGGGCTAGATGGATTTCGTGTCAAAAGAAAAACGAGTGAAAAGACGCGGGGTTTTAGAC
TTTTTTCCAAAAAGCATGCCACTTCACTTCTTATTCACTTCCTCACTTTGTTTACTTCGTAACCT
TTGGTATTGCGTCTCATCCAGGTGATTAATATCACGTCATAGCATTTCTTCCCCTGCTTCTGAAA
GAAAAGAATCATATGACTTACCTAGGCGGTTGTACCACTTGAAAGGTGACATTGAAGAAGCTGAA
TCGAAACTTATACGATATTGTAGAGAACCACTCTGAGTCTTTATTCCCCTAGTCTTCTTCGCATC
CTTACTTACCTCCTTATACTACTGTAAGCATATGAAGGAATGGGT
Right flanking sequence: Indices 350916 -- 351183
GCCTGTTGCCAAGGAGAACGGATAACATGGAAAGACAAGGAATACAAGGAAAGCGTGGGAGTTGC
CGGGGTAACCTCCCTCTCCGGTCGAGTAACCTTCTACCTCTCCTTGTTGCCGAGGAATTCCATTC
CTATTCGGAAAGTCGACTTTGTTCGATAGTTCCCATCTCTCGATCACCCCACAAGAGAAGCCACT
CGAACGAATAGCTCCCCGTGGAATTCCTCAAAGCTATAATATAAATGGAATTATCCCGATCTTTA
AAAAAATT
Done.