Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_061056
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 162460
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 2
Found at i:152 original size:14 final size:14
Alignment explanation
Indices: 133--160 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
123 TTTATTTTTT
133 ATTGTGGTTATGGG
1 ATTGTGGTTATGGG
147 ATTGTGGTTATGGG
1 ATTGTGGTTATGGG
161 CGAACGACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (14 bp):
ATTGTGGTTATGGG
Left flanking sequence: Indices 1 -- 132
ATTATATATGATATTTTTAATATCATATTTAAATAGTTTATATATAGTTTATATAAGAAATAGTT
TATAGAAAATTTTATTTATTTTATTATTTATACTACTTGATTTCTATTTCGTATTTATTTATTTT
TT
Right flanking sequence: Indices 161 -- 660
CGAACGACGGGAATTGAACCCGCGCATGGTGGATTCACAATCCACTGCCTTGATCCACTTGGCTA
CATCCGCCCCTAATACTCTATTTACACATTAAATAGATTTGTAATTTCTAGCATTTACCATTTCA
TTTTTTCTTTCTTATAAAAATAAAAAAAAAAAAAATGAAATTTAAAACTTTATCTTTTATTCCTT
TATCATTTTTATATCTTTTTTTGAATCTAACATAATAACTTTACAAAAATTCTTATGTTAATGTT
AAAGTAAAGAAATATTTATGTTATTTATGTAAAGTTAAAAAAATAGTAATAAATATTACTAAAAA
AGGAGCAATACCAAGCTTCTTGATAGAACAAGAAATTGGGTATTGCTCCCCTTTTTAGTTTTTTT
TTTTTCAAAAACTCGTACACACTAAGGCCGAAATATTATACATTATACATTTATAGATGGAGCTT
CGACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCAT
Found at i:4819 original size:14 final size:14
Alignment explanation
Indices: 4800--4833 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
4790 CAAAAAAAAT
4800 AAAAATTCAAGTAA
1 AAAAATTCAAGTAA
4814 AAAAATTCAAGTAA
1 AAAAATTCAAGTAA
4828 ATAAAA
1 A-AAAA
4834 GTAAAGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (14 bp):
AAAAATTCAAGTAA
Left flanking sequence: Indices 4300 -- 4799
TAATTGGAACCGTGGTGCTCTATCCATTTATTCCACTCGACCCAAGCTTAAATTCATTTTTGAAT
GTTCCGCACCAAGAATGCAAACAAGGTTAGTAACCGATCCAGTAAAAATGAAATATTCTCAGAAT
TCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAA
ACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCATAAAAGATGTTAGTCGCGCT
TAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCAAATAAGAACTAAAATAATTAGGTTATGT
AAATACAATCAGAATCAAAATAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTA
AATTAGAAGGAAAGAACCAAGAAATGAAAAAATTTCTAATGGATTCTGAACATAAAAGAAAGATC
AAAAGAAATTCTCAAAAAAATCTCAACTCCAATATCAAAAAAAAT
Right flanking sequence: Indices 4834 -- 5333
GTAAAGAGTAAATAAAAGTAAAGTAAAAGTATAAAGTATAAATAAAAATATATATAGATAAAGTC
AAATAGATAAAGTAAAGATTAGATAAAGTAAAGATAAAGTCAAAACCTATGGATCACCTTTTGTT
TCTTATGTTACTCATTCCTATATTTCTTGTATATTTTGTATATTTATTATAGACTTATTTATTAT
ATCTTATTTAGGATATAGATATTATTTATTATATAAATATATTGAATTTATATAAATAGATTCAT
ATTCACTATATTTACAATATAAATATATGTTATATTTATTTAATAAATATATTTTATAAATATAT
TTTAGTTTATATAACTTAATATATAAATTAGATAACTTATATAAATTAGAACATTAGAACAATAC
TTTTTTAGAATTTATTCTATAATTTAGAACATTTTTTATAAATATAAATTAAATATACATTTTTT
CTTTTTTGAATCAAAAAAATATTTTTGTATCACAGCACATCCAAC
Found at i:4843 original size:17 final size:17
Alignment explanation
Indices: 4823--4856 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4813 AAAAAATTCA
4823 AGTAAATAAAAGTAAAG
1 AGTAAATAAAAGTAAAG
4840 AGTAAATAAAAGTAAAG
1 AGTAAATAAAAGTAAAG
4857 TAAAAGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (17 bp):
AGTAAATAAAAGTAAAG
Left flanking sequence: Indices 4323 -- 4822
CCATTTATTCCACTCGACCCAAGCTTAAATTCATTTTTGAATGTTCCGCACCAAGAATGCAAACA
AGGTTAGTAACCGATCCAGTAAAAATGAAATATTCTCAGAATTCGACATTGATACGACATGCTGT
TTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAA
TCTCTTTATTCATACAAATGCATAAAAGATGTTAGTCGCGCTTAAAAGCCGAGTACTCTACCGTT
GAGTTAGCAACCCAAATAAGAACTAAAATAATTAGGTTATGTAAATACAATCAGAATCAAAATAA
ATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAGGAAAGAACCAAGAA
ATGAAAAAATTTCTAATGGATTCTGAACATAAAAGAAAGATCAAAAGAAATTCTCAAAAAAATCT
CAACTCCAATATCAAAAAAAATAAAAATTCAAGTAAAAAAATTCA
Right flanking sequence: Indices 4857 -- 5356
TAAAAGTATAAAGTATAAATAAAAATATATATAGATAAAGTCAAATAGATAAAGTAAAGATTAGA
TAAAGTAAAGATAAAGTCAAAACCTATGGATCACCTTTTGTTTCTTATGTTACTCATTCCTATAT
TTCTTGTATATTTTGTATATTTATTATAGACTTATTTATTATATCTTATTTAGGATATAGATATT
ATTTATTATATAAATATATTGAATTTATATAAATAGATTCATATTCACTATATTTACAATATAAA
TATATGTTATATTTATTTAATAAATATATTTTATAAATATATTTTAGTTTATATAACTTAATATA
TAAATTAGATAACTTATATAAATTAGAACATTAGAACAATACTTTTTTAGAATTTATTCTATAAT
TTAGAACATTTTTTATAAATATAAATTAAATATACATTTTTTCTTTTTTGAATCAAAAAAATATT
TTTGTATCACAGCACATCCAACAAATTCATTATTTGAATGAAGAA
Found at i:4860 original size:11 final size:11
Alignment explanation
Indices: 4831--4864 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
4821 CAAGTAAATA
4831 AAAGTAAAGAGT
1 AAAGTAAA-AGT
4843 AAA-TAAAAGT
1 AAAGTAAAAGT
4853 AAAGTAAAAGT
1 AAAGTAAAAGT
4864 A
1 A
4865 TAAAGTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.29
11 12 0.57
12 3 0.14
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (11 bp):
AAAGTAAAAGT
Left flanking sequence: Indices 4331 -- 4830
TCCACTCGACCCAAGCTTAAATTCATTTTTGAATGTTCCGCACCAAGAATGCAAACAAGGTTAGT
AACCGATCCAGTAAAAATGAAATATTCTCAGAATTCGACATTGATACGACATGCTGTTTTTTCCA
TTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTA
TTCATACAAATGCATAAAAGATGTTAGTCGCGCTTAAAAGCCGAGTACTCTACCGTTGAGTTAGC
AACCCAAATAAGAACTAAAATAATTAGGTTATGTAAATACAATCAGAATCAAAATAAATAAATAA
AGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAGGAAAGAACCAAGAAATGAAAAA
ATTTCTAATGGATTCTGAACATAAAAGAAAGATCAAAAGAAATTCTCAAAAAAATCTCAACTCCA
ATATCAAAAAAAATAAAAATTCAAGTAAAAAAATTCAAGTAAATA
Right flanking sequence: Indices 4865 -- 5364
TAAAGTATAAATAAAAATATATATAGATAAAGTCAAATAGATAAAGTAAAGATTAGATAAAGTAA
AGATAAAGTCAAAACCTATGGATCACCTTTTGTTTCTTATGTTACTCATTCCTATATTTCTTGTA
TATTTTGTATATTTATTATAGACTTATTTATTATATCTTATTTAGGATATAGATATTATTTATTA
TATAAATATATTGAATTTATATAAATAGATTCATATTCACTATATTTACAATATAAATATATGTT
ATATTTATTTAATAAATATATTTTATAAATATATTTTAGTTTATATAACTTAATATATAAATTAG
ATAACTTATATAAATTAGAACATTAGAACAATACTTTTTTAGAATTTATTCTATAATTTAGAACA
TTTTTTATAAATATAAATTAAATATACATTTTTTCTTTTTTGAATCAAAAAAATATTTTTGTATC
ACAGCACATCCAACAAATTCATTATTTGAATGAAGAAAAAAATCA
Found at i:4879 original size:19 final size:18
Alignment explanation
Indices: 4843--4885 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
4833 AGTAAAGAGT
*
4843 AAATA-AAAGTAAAGTAA
1 AAATATAAAGTAAAATAA
*
4860 AAGTATAAAGTATAAATAA
1 AAATATAAAGTA-AAATAA
4879 AAATATA
1 AAATATA
4886 TATAGATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 4 0.19
18 6 0.29
19 11 0.52
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.23
Consensus pattern (18 bp):
AAATATAAAGTAAAATAA
Left flanking sequence: Indices 4343 -- 4842
AAGCTTAAATTCATTTTTGAATGTTCCGCACCAAGAATGCAAACAAGGTTAGTAACCGATCCAGT
AAAAATGAAATATTCTCAGAATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTC
AAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATG
CATAAAAGATGTTAGTCGCGCTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCAAATAAG
AACTAAAATAATTAGGTTATGTAAATACAATCAGAATCAAAATAAATAAATAAAGAGATTGAATC
GTATGACACAATCAAAACATTAAATTAGAAGGAAAGAACCAAGAAATGAAAAAATTTCTAATGGA
TTCTGAACATAAAAGAAAGATCAAAAGAAATTCTCAAAAAAATCTCAACTCCAATATCAAAAAAA
ATAAAAATTCAAGTAAAAAAATTCAAGTAAATAAAAGTAAAGAGT
Right flanking sequence: Indices 4886 -- 5385
TATAGATAAAGTCAAATAGATAAAGTAAAGATTAGATAAAGTAAAGATAAAGTCAAAACCTATGG
ATCACCTTTTGTTTCTTATGTTACTCATTCCTATATTTCTTGTATATTTTGTATATTTATTATAG
ACTTATTTATTATATCTTATTTAGGATATAGATATTATTTATTATATAAATATATTGAATTTATA
TAAATAGATTCATATTCACTATATTTACAATATAAATATATGTTATATTTATTTAATAAATATAT
TTTATAAATATATTTTAGTTTATATAACTTAATATATAAATTAGATAACTTATATAAATTAGAAC
ATTAGAACAATACTTTTTTAGAATTTATTCTATAATTTAGAACATTTTTTATAAATATAAATTAA
ATATACATTTTTTCTTTTTTGAATCAAAAAAATATTTTTGTATCACAGCACATCCAACAAATTCA
TTATTTGAATGAAGAAAAAAATCAAACCCATGGAACGGAGAAAAA
Found at i:4923 original size:16 final size:16
Alignment explanation
Indices: 4888--4933 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
4878 AAAATATATA
*
4888 TAGATAAAGTCAA-A-
1 TAGATAAAGTAAAGAT
4902 TAGATAAAGTAAAGAT
1 TAGATAAAGTAAAGAT
4918 TAGATAAAGTAAAGAT
1 TAGATAAAGTAAAGAT
4934 AAAGTCAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 12 0.41
15 1 0.03
16 16 0.55
ACGTcount: A:0.57, C:0.02, G:0.17, T:0.24
Consensus pattern (16 bp):
TAGATAAAGTAAAGAT
Left flanking sequence: Indices 4388 -- 4887
AGGTTAGTAACCGATCCAGTAAAAATGAAATATTCTCAGAATTCGACATTGATACGACATGCTGT
TTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAA
TCTCTTTATTCATACAAATGCATAAAAGATGTTAGTCGCGCTTAAAAGCCGAGTACTCTACCGTT
GAGTTAGCAACCCAAATAAGAACTAAAATAATTAGGTTATGTAAATACAATCAGAATCAAAATAA
ATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAGGAAAGAACCAAGAA
ATGAAAAAATTTCTAATGGATTCTGAACATAAAAGAAAGATCAAAAGAAATTCTCAAAAAAATCT
CAACTCCAATATCAAAAAAAATAAAAATTCAAGTAAAAAAATTCAAGTAAATAAAAGTAAAGAGT
AAATAAAAGTAAAGTAAAAGTATAAAGTATAAATAAAAATATATA
Right flanking sequence: Indices 4934 -- 5433
AAAGTCAAAACCTATGGATCACCTTTTGTTTCTTATGTTACTCATTCCTATATTTCTTGTATATT
TTGTATATTTATTATAGACTTATTTATTATATCTTATTTAGGATATAGATATTATTTATTATATA
AATATATTGAATTTATATAAATAGATTCATATTCACTATATTTACAATATAAATATATGTTATAT
TTATTTAATAAATATATTTTATAAATATATTTTAGTTTATATAACTTAATATATAAATTAGATAA
CTTATATAAATTAGAACATTAGAACAATACTTTTTTAGAATTTATTCTATAATTTAGAACATTTT
TTATAAATATAAATTAAATATACATTTTTTCTTTTTTGAATCAAAAAAATATTTTTGTATCACAG
CACATCCAACAAATTCATTATTTGAATGAAGAAAAAAATCAAACCCATGGAACGGAGAAAAATTA
AATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATT
Found at i:5036 original size:14 final size:15
Alignment explanation
Indices: 5004--5061 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
4994 ATATTTTGTA
5004 TATTTATTATAGACT
1 TATTTATTATAGACT
*
5019 TATTTATTATA-TCT
1 TATTTATTATAGACT
* *
5033 TATTTAGGATATAGATAT
1 TATTTA--TTATAGA-CT
5051 TATTTATTATA
1 TATTTATTATA
5062 TAAATATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
14 8 0.24
15 11 0.32
16 8 0.24
18 7 0.21
ACGTcount: A:0.34, C:0.03, G:0.07, T:0.55
Consensus pattern (15 bp):
TATTTATTATAGACT
Left flanking sequence: Indices 4504 -- 5003
ATGGTATGGACGAATCTCTTTATTCATACAAATGCATAAAAGATGTTAGTCGCGCTTAAAAGCCG
AGTACTCTACCGTTGAGTTAGCAACCCAAATAAGAACTAAAATAATTAGGTTATGTAAATACAAT
CAGAATCAAAATAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAG
GAAAGAACCAAGAAATGAAAAAATTTCTAATGGATTCTGAACATAAAAGAAAGATCAAAAGAAAT
TCTCAAAAAAATCTCAACTCCAATATCAAAAAAAATAAAAATTCAAGTAAAAAAATTCAAGTAAA
TAAAAGTAAAGAGTAAATAAAAGTAAAGTAAAAGTATAAAGTATAAATAAAAATATATATAGATA
AAGTCAAATAGATAAAGTAAAGATTAGATAAAGTAAAGATAAAGTCAAAACCTATGGATCACCTT
TTGTTTCTTATGTTACTCATTCCTATATTTCTTGTATATTTTGTA
Right flanking sequence: Indices 5062 -- 5561
TAAATATATTGAATTTATATAAATAGATTCATATTCACTATATTTACAATATAAATATATGTTAT
ATTTATTTAATAAATATATTTTATAAATATATTTTAGTTTATATAACTTAATATATAAATTAGAT
AACTTATATAAATTAGAACATTAGAACAATACTTTTTTAGAATTTATTCTATAATTTAGAACATT
TTTTATAAATATAAATTAAATATACATTTTTTCTTTTTTGAATCAAAAAAATATTTTTGTATCAC
AGCACATCCAACAAATTCATTATTTGAATGAAGAAAAAAATCAAACCCATGGAACGGAGAAAAAT
TAAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGATACATTGTTGT
CAATATGAATGCGAATGCGTTAAAGTTAAAAAAAAAAATATATACACAATGAAAAAAACAAAAGA
ATTAATTCAATTCAATTTAACCAAAAAAATTCACTATAAATTATA
Found at i:5161 original size:13 final size:13
Alignment explanation
Indices: 5111--5162 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
5101 ATATTTACAA
*
5111 TATAAATATATGT
1 TATAAATATATTT
*
5124 TAT--ATTTATTT
1 TATAAATATATTT
*
5135 AATAAATATATTT
1 TATAAATATATTT
5148 TATAAATATATTT
1 TATAAATATATTT
5161 TA
1 TA
5163 GTTTATATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 8 0.25
13 24 0.75
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (13 bp):
TATAAATATATTT
Left flanking sequence: Indices 4611 -- 5110
TAATTAGGTTATGTAAATACAATCAGAATCAAAATAAATAAATAAAGAGATTGAATCGTATGACA
CAATCAAAACATTAAATTAGAAGGAAAGAACCAAGAAATGAAAAAATTTCTAATGGATTCTGAAC
ATAAAAGAAAGATCAAAAGAAATTCTCAAAAAAATCTCAACTCCAATATCAAAAAAAATAAAAAT
TCAAGTAAAAAAATTCAAGTAAATAAAAGTAAAGAGTAAATAAAAGTAAAGTAAAAGTATAAAGT
ATAAATAAAAATATATATAGATAAAGTCAAATAGATAAAGTAAAGATTAGATAAAGTAAAGATAA
AGTCAAAACCTATGGATCACCTTTTGTTTCTTATGTTACTCATTCCTATATTTCTTGTATATTTT
GTATATTTATTATAGACTTATTTATTATATCTTATTTAGGATATAGATATTATTTATTATATAAA
TATATTGAATTTATATAAATAGATTCATATTCACTATATTTACAA
Right flanking sequence: Indices 5163 -- 5662
GTTTATATAACTTAATATATAAATTAGATAACTTATATAAATTAGAACATTAGAACAATACTTTT
TTAGAATTTATTCTATAATTTAGAACATTTTTTATAAATATAAATTAAATATACATTTTTTCTTT
TTTGAATCAAAAAAATATTTTTGTATCACAGCACATCCAACAAATTCATTATTTGAATGAAGAAA
AAAATCAAACCCATGGAACGGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGAT
CGGATTATATTTATTTGATACATTGTTGTCAATATGAATGCGAATGCGTTAAAGTTAAAAAAAAA
AATATATACACAATGAAAAAAACAAAAGAATTAATTCAATTCAATTTAACCAAAAAAATTCACTA
TAAATTATATAAACTATATTAAATAATAATAAAAAAAAAAAAAAAGATTTTTGTCGTTTTTGTCG
TTATAAGTTATAAAACAATAAGTTATAAAACAAAGCATTCTATGA
Found at i:5180 original size:37 final size:37
Alignment explanation
Indices: 5111--5182 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
5101 ATATTTACAA
*
5111 TATAAATATATGTTATATTTATTTAATAAATATATTT
1 TATAAATATATGTTATATTTATATAATAAATATATTT
*
5148 TATAAATATAT-TT-TAGTTTATATAACTTAATATAT
1 TATAAATATATGTTATA-TTTATATAA-TAAATATAT
5183 AAATTAGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 2 0.06
36 10 0.32
37 19 0.61
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (37 bp):
TATAAATATATGTTATATTTATATAATAAATATATTT
Left flanking sequence: Indices 4611 -- 5110
TAATTAGGTTATGTAAATACAATCAGAATCAAAATAAATAAATAAAGAGATTGAATCGTATGACA
CAATCAAAACATTAAATTAGAAGGAAAGAACCAAGAAATGAAAAAATTTCTAATGGATTCTGAAC
ATAAAAGAAAGATCAAAAGAAATTCTCAAAAAAATCTCAACTCCAATATCAAAAAAAATAAAAAT
TCAAGTAAAAAAATTCAAGTAAATAAAAGTAAAGAGTAAATAAAAGTAAAGTAAAAGTATAAAGT
ATAAATAAAAATATATATAGATAAAGTCAAATAGATAAAGTAAAGATTAGATAAAGTAAAGATAA
AGTCAAAACCTATGGATCACCTTTTGTTTCTTATGTTACTCATTCCTATATTTCTTGTATATTTT
GTATATTTATTATAGACTTATTTATTATATCTTATTTAGGATATAGATATTATTTATTATATAAA
TATATTGAATTTATATAAATAGATTCATATTCACTATATTTACAA
Right flanking sequence: Indices 5183 -- 5682
AAATTAGATAACTTATATAAATTAGAACATTAGAACAATACTTTTTTAGAATTTATTCTATAATT
TAGAACATTTTTTATAAATATAAATTAAATATACATTTTTTCTTTTTTGAATCAAAAAAATATTT
TTGTATCACAGCACATCCAACAAATTCATTATTTGAATGAAGAAAAAAATCAAACCCATGGAACG
GAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGATA
CATTGTTGTCAATATGAATGCGAATGCGTTAAAGTTAAAAAAAAAAATATATACACAATGAAAAA
AACAAAAGAATTAATTCAATTCAATTTAACCAAAAAAATTCACTATAAATTATATAAACTATATT
AAATAATAATAAAAAAAAAAAAAAAGATTTTTGTCGTTTTTGTCGTTATAAGTTATAAAACAATA
AGTTATAAAACAAAGCATTCTATGATAAAAAGGAGATTCAATTAA
Found at i:5640 original size:15 final size:15
Alignment explanation
Indices: 5620--5650 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
5610 TTTTGTCGTT
5620 ATAAGTTATAAAACA
1 ATAAGTTATAAAACA
5635 ATAAGTTATAAAACA
1 ATAAGTTATAAAACA
5650 A
1 A
5651 AGCATTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (15 bp):
ATAAGTTATAAAACA
Left flanking sequence: Indices 5120 -- 5619
ATGTTATATTTATTTAATAAATATATTTTATAAATATATTTTAGTTTATATAACTTAATATATAA
ATTAGATAACTTATATAAATTAGAACATTAGAACAATACTTTTTTAGAATTTATTCTATAATTTA
GAACATTTTTTATAAATATAAATTAAATATACATTTTTTCTTTTTTGAATCAAAAAAATATTTTT
GTATCACAGCACATCCAACAAATTCATTATTTGAATGAAGAAAAAAATCAAACCCATGGAACGGA
GAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGATACA
TTGTTGTCAATATGAATGCGAATGCGTTAAAGTTAAAAAAAAAAATATATACACAATGAAAAAAA
CAAAAGAATTAATTCAATTCAATTTAACCAAAAAAATTCACTATAAATTATATAAACTATATTAA
ATAATAATAAAAAAAAAAAAAAAGATTTTTGTCGTTTTTGTCGTT
Right flanking sequence: Indices 5651 -- 6150
AGCATTCTATGATAAAAAGGAGATTCAATTAATTTGCGTATTATTTGAACACGATAAAATTTTTG
AAAAAGATATGATTGCGAAAAAAGTCATTAAAAATAAGAAACAAAAAGTGAATTTATTATCCTCC
TAAATAGAAAATTGTTCAAAAAGGCAATCCTTATTTTCATTTTAATAGATGTTTTCATTTTAATA
TATGAATATAGGTATGCTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGT
TGCCTTACCACTTGGCCACGCCCCATTTATATTTCTATTCAACACTAATAAAAAGTAATAGTGGT
ATGGGTTCTTCGTCAATTCTCGCCCAAGTATCTATGATTAAGATTAGCTTGTTGTTCGGATTTTA
ATATATGTAGATATAAAATTAAACTGAATTGATTGATTCTAATTGATTATAATATATAATTCAAT
TATGATATTGTATGAAAATATGATTTCGTCTATTCTTATTCTTTT
Found at i:6557 original size:14 final size:14
Alignment explanation
Indices: 6538--6567 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6528 ATTCGATAAA
6538 AAAAAAATTATAGC
1 AAAAAAATTATAGC
6552 AAAAAAATTATAGC
1 AAAAAAATTATAGC
6566 AA
1 AA
6568 TTAGCAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAAAAATTATAGC
Left flanking sequence: Indices 6038 -- 6537
TTAATATATGTAGATATAAAATTAAACTGAATTGATTGATTCTAATTGATTATAATATATAATTC
AATTATGATATTGTATGAAAATATGATTTCGTCTATTCTTATTCTTTTTTTATTTCAGAGAATTC
AAGGATTTTTGATTGGGTGAGTTTAAGTTTAAAGAACGTTTTTTGGTCTACCTTATTTTATTTTA
TATCAATAATATATTTATAACTCAGTCAAAATACAATTATTTTCAAGAACAAAATCTTTAACAAA
ATCTTTGTTATGCTTAATCTTTTTAGTTTGATTTGTATCTGTCTTAATTCTGCCCTTTATTCAAG
CAGTTTTTTCTTCACAAAATTGCCCGAAGCCTACGCTTTTTTGAACTCAATCATAGATATTATGC
CAGTAATACCTGTGCTTTTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGA
GATCTTTAATACTAGCCTAAAAGAATTCACGATTTATTCGATAAA
Right flanking sequence: Indices 6568 -- 7067
TTAGCAATTAATAAGATCAAATAAGTCTTATAGTATAAGCCCTCAATTTAAACATTGAAGTTATT
GTATAGACGCGAGAAATCTTAATTACTCCATTTCTTCATTTTGGAATTTTTTCCATTCTATTGAA
AGAAATCCTATTAGAGTCCCCCGCACTATCTAATTGTGGATATGAAAGAAAATTTTTGGCAACGA
AAGATTGGACTCTTATTACAAATGAATTTATACAATTTTTTTTTTTTTTCGATTTCTAGAAACCG
ATTTGTTTCTTGATGTCAAAATATTATATGTAGTATAAAAAGAAAGAATCTATTTTCTTTTTCCA
AACCAAAAAAGATCTTGGAGATTGTATAATGCTTACTCTCAAACTCTTTGTTTACACAGTAGTGA
TATTCTTTGTTTCTCTCTTCATTTTCGGATTTTTATCCAATGATCCGGGGCGCAATCCGGGACGT
GAAGAATAAAAAATAACCGTTTTTCCTTGCTTGATTTTTAAATGT
Found at i:7429 original size:16 final size:17
Alignment explanation
Indices: 7394--7431 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7384 ATTACTTTCC
* *
7394 TAATTCGTAATTCTTTT
1 TAATTCGTAATTATTCT
7411 TAATTC-TAATTATTCT
1 TAATTCGTAATTATTCT
7427 TAATT
1 TAATT
7432 ATCTTAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.58
Consensus pattern (17 bp):
TAATTCGTAATTATTCT
Left flanking sequence: Indices 6894 -- 7393
ACCAAAAAAGATCTTGGAGATTGTATAATGCTTACTCTCAAACTCTTTGTTTACACAGTAGTGAT
ATTCTTTGTTTCTCTCTTCATTTTCGGATTTTTATCCAATGATCCGGGGCGCAATCCGGGACGTG
AAGAATAAAAAATAACCGTTTTTCCTTGCTTGATTTTTAAATGTTTTGGGCGTTTTCTTTATTCT
ACATCTTTAACTATTAAATTAAATAAAACAAAAGTAACTAAAACAAAAGAAAAAAGATTCGATAA
ATTTGACAGATAAAAAGATAAAAAAAATACCAAGTTATCAACAGAACCGGAAAGAGAGGGATTCG
AACCCTCGGTACGAATAACTCGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATC
TCTCCCAATTTTAAATTGGTAATTACTATCTTATATTACATAACAAGTGAGGCTCAAAAAAAACC
TTTTTTTTTCCATTTCTCTTTTTTTAGCTCTCTTTATTACTTTCC
Right flanking sequence: Indices 7432 -- 7931
ATCTTAATTAGAATTCTTTTTAATTAAGAATTTGTACTTGAATTCTAATTAATTGAATATTTTAT
TCTAATTAAATTAATAGCTAATTAATTTAATAGCTAATTAATTTAATAGTATATTAATAGTATAT
ATAGATAATTTATATAATTATATAAATTATCTATATATAATTGTATTTATTATCTATTATATCTA
TTATTATAACTATTATATAATAATAGATATAATAGTCTAGTTTATTCTAGTTTATTAAATAAATA
ATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATTATATTCTAATATATAAATATCAG
AAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTA
ATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAATTAATATATAATCCTTAAG
AGGATTAATATACTTAATATATAAAATATATAATAACTTAATATA
Found at i:7519 original size:16 final size:16
Alignment explanation
Indices: 7498--7554 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
7488 ATATTTTATT
*
7498 CTAATTAAATTAATAG
1 CTAATTAATTTAATAG
7514 CTAATTAATTTAATAG
1 CTAATTAATTTAATAG
7530 CTAATTAATTTAATAG
1 CTAATTAATTTAATAG
7546 -TATATTAAT
1 CTA-ATTAAT
7555 AGTATATATA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
15 2 0.05
16 37 0.95
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (16 bp):
CTAATTAATTTAATAG
Left flanking sequence: Indices 6998 -- 7497
TGATCCGGGGCGCAATCCGGGACGTGAAGAATAAAAAATAACCGTTTTTCCTTGCTTGATTTTTA
AATGTTTTGGGCGTTTTCTTTATTCTACATCTTTAACTATTAAATTAAATAAAACAAAAGTAACT
AAAACAAAAGAAAAAAGATTCGATAAATTTGACAGATAAAAAGATAAAAAAAATACCAAGTTATC
AACAGAACCGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACAACGGATTAGCAAT
CCGACGCTTTAGTCCACTCAGCCATCTCTCCCAATTTTAAATTGGTAATTACTATCTTATATTAC
ATAACAAGTGAGGCTCAAAAAAAACCTTTTTTTTTCCATTTCTCTTTTTTTAGCTCTCTTTATTA
CTTTCCTAATTCGTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTT
AATTAAGAATTTGTACTTGAATTCTAATTAATTGAATATTTTATT
Right flanking sequence: Indices 7555 -- 8054
AGTATATATAGATAATTTATATAATTATATAAATTATCTATATATAATTGTATTTATTATCTATT
ATATCTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTTTATTCTAGTTTATTAA
ATAAATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATTATATTCTAATATATAA
ATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAGGATTTTAGTAGATTTG
AGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAATTAATATATAAT
CCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATATAAAATATATAAT
ATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATAAAAAAAAAATAATAAA
AATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCAT
Found at i:7583 original size:21 final size:23
Alignment explanation
Indices: 7559--7603 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
7549 ATTAATAGTA
*
7559 TATATAGATAAT-T-TATATAAT
1 TATATAAATAATCTATATATAAT
*
7580 TATATAAATTATCTATATATAAT
1 TATATAAATAATCTATATATAAT
7603 T
1 T
7604 GTATTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TATATAAATAATCTATATATAAT
Left flanking sequence: Indices 7059 -- 7558
TTTAAATGTTTTGGGCGTTTTCTTTATTCTACATCTTTAACTATTAAATTAAATAAAACAAAAGT
AACTAAAACAAAAGAAAAAAGATTCGATAAATTTGACAGATAAAAAGATAAAAAAAATACCAAGT
TATCAACAGAACCGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACAACGGATTAG
CAATCCGACGCTTTAGTCCACTCAGCCATCTCTCCCAATTTTAAATTGGTAATTACTATCTTATA
TTACATAACAAGTGAGGCTCAAAAAAAACCTTTTTTTTTCCATTTCTCTTTTTTTAGCTCTCTTT
ATTACTTTCCTAATTCGTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCT
TTTTAATTAAGAATTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAG
CTAATTAATTTAATAGCTAATTAATTTAATAGTATATTAATAGTA
Right flanking sequence: Indices 7604 -- 8103
GTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTT
TATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATT
ATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAG
GATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCT
TAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAAT
ATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATA
AAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGC
AATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAA
Found at i:7586 original size:17 final size:15
Alignment explanation
Indices: 7535--7603 Score: 50
Period size: 17 Copynumber: 4.3 Consensus size: 15
7525 AATAGCTAAT
7535 TAATTTA-ATAGTATA
1 TAATTTATATA-TATA
* *
7550 TTAATAGTATATATAGA
1 -TAAT-TTATATATATA
7567 TAATTTATATAATTATA
1 TAATTTATAT-A-TATA
* *
7584 TAAATTATCTATATA
1 TAATTTATATATATA
7599 TAATT
1 TAATT
7604 GTATTTATTA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
15 13 0.31
16 10 0.24
17 16 0.38
18 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.48
Consensus pattern (15 bp):
TAATTTATATATATA
Left flanking sequence: Indices 7035 -- 7534
ATAACCGTTTTTCCTTGCTTGATTTTTAAATGTTTTGGGCGTTTTCTTTATTCTACATCTTTAAC
TATTAAATTAAATAAAACAAAAGTAACTAAAACAAAAGAAAAAAGATTCGATAAATTTGACAGAT
AAAAAGATAAAAAAAATACCAAGTTATCAACAGAACCGGAAAGAGAGGGATTCGAACCCTCGGTA
CGAATAACTCGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATCTCTCCCAATTT
TAAATTGGTAATTACTATCTTATATTACATAACAAGTGAGGCTCAAAAAAAACCTTTTTTTTTCC
ATTTCTCTTTTTTTAGCTCTCTTTATTACTTTCCTAATTCGTAATTCTTTTTAATTCTAATTATT
CTTAATTATCTTAATTAGAATTCTTTTTAATTAAGAATTTGTACTTGAATTCTAATTAATTGAAT
ATTTTATTCTAATTAAATTAATAGCTAATTAATTTAATAGCTAAT
Right flanking sequence: Indices 7604 -- 8103
GTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTT
TATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATT
ATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAG
GATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCT
TAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAAT
ATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATA
AAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGC
AATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAA
Found at i:7598 original size:23 final size:24
Alignment explanation
Indices: 7571--7623 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
7561 TATAGATAAT
7571 TTATATAATTATATAAATTATCTA
1 TTATATAATTATATAAATTATCTA
* **
7595 -TATATAATTGTATTTATTATCTA
1 TTATATAATTATATAAATTATCTA
7618 TTATAT
1 TTATAT
7624 CTATTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (24 bp):
TTATATAATTATATAAATTATCTA
Left flanking sequence: Indices 7071 -- 7570
GGGCGTTTTCTTTATTCTACATCTTTAACTATTAAATTAAATAAAACAAAAGTAACTAAAACAAA
AGAAAAAAGATTCGATAAATTTGACAGATAAAAAGATAAAAAAAATACCAAGTTATCAACAGAAC
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACAACGGATTAGCAATCCGACGCT
TTAGTCCACTCAGCCATCTCTCCCAATTTTAAATTGGTAATTACTATCTTATATTACATAACAAG
TGAGGCTCAAAAAAAACCTTTTTTTTTCCATTTCTCTTTTTTTAGCTCTCTTTATTACTTTCCTA
ATTCGTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTTAATTAAGA
ATTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTA
ATAGCTAATTAATTTAATAGTATATTAATAGTATATATAGATAAT
Right flanking sequence: Indices 7624 -- 8123
CTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTTTATTCTAGTTTATTAAATAA
ATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATTATATTCTAATATATAAATAT
CAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAGGATTTTAGTAGATTTGAGTA
TTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAATTAATATATAATCCTT
AAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATATAAAATATATAATATTA
AATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATAAAAAAAAAATAATAAAAATA
TAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTA
GATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAAAAAGTA
Found at i:7794 original size:20 final size:20
Alignment explanation
Indices: 7766--7803 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7756 GAAAAATTAG
7766 AATAGTAAAATAGGATTTAT
1 AATAGTAAAATAGGATTTAT
*
7786 AATATTAAAATAGGATTT
1 AATAGTAAAATAGGATTT
7804 TAGTAGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (20 bp):
AATAGTAAAATAGGATTTAT
Left flanking sequence: Indices 7266 -- 7765
TTAGTCCACTCAGCCATCTCTCCCAATTTTAAATTGGTAATTACTATCTTATATTACATAACAAG
TGAGGCTCAAAAAAAACCTTTTTTTTTCCATTTCTCTTTTTTTAGCTCTCTTTATTACTTTCCTA
ATTCGTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTTAATTAAGA
ATTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTA
ATAGCTAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAATTA
TCTATATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATA
TAATAGTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTAC
ATTCAGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAG
Right flanking sequence: Indices 7804 -- 8303
TAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAAT
TAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATATA
AAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATAAAAAA
AAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGCAATTC
TTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAAAAAGTATCTTA
AACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAGAAAAAAAACTC
AAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAAAAATTTATAAA
AGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAA
Found at i:7903 original size:9 final size:8
Alignment explanation
Indices: 7890--7983 Score: 58
Period size: 7 Copynumber: 11.9 Consensus size: 8
7880 CCTTAAGAGG
7890 ATTAATAT
1 ATTAATAT
7898 ACTTAATAT
1 A-TTAATAT
*
7907 A-TAAAAT
1 ATTAATAT
7914 ATATAATA-
1 AT-TAATAT
7922 ACTTAATAT
1 A-TTAATAT
*
7931 A-TAAAAT
1 ATTAATAT
7938 ATATAATAT
1 AT-TAATAT
*
7947 -TAAATAAGT
1 ATTAAT-A-T
7956 ATTAATAT
1 ATTAATAT
7964 A-TAATA-
1 ATTAATAT
7970 ATTAATAT
1 ATTAATAT
7978 A-TAATA
1 ATTAATA
7984 AAAAATAATA
Statistics
Matches: 68, Mismatches: 6, Indels: 25
0.69 0.06 0.25
Matches are distributed among these distances:
6 1 0.01
7 30 0.44
8 12 0.18
9 21 0.31
10 4 0.06
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.40
Consensus pattern (8 bp):
ATTAATAT
Left flanking sequence: Indices 7390 -- 7889
TTCCTAATTCGTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTTAA
TTAAGAATTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATT
AATTTAATAGCTAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATAT
AAATTATCTATATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAA
TAGATATAATAGTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTT
TATTACATTCAGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGG
ATTTATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGG
AGAATCAATATATAATCCTTAAATTAATATATAATCCTTAAGAGG
Right flanking sequence: Indices 7984 -- 8483
AAAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAA
TTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTT
TAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATC
AAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTA
TGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTA
TATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATTATATAAAATAAATATAT
ATTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTA
CCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCAT
Found at i:7946 original size:31 final size:32
Alignment explanation
Indices: 7889--7984 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 32
7879 TCCTTAAGAG
*
7889 GATTAATATACTTAATATATAAAATATATAATAA
1 GATTAATATA--TAATATATATAATATATAATAA
* *
7923 -CTTAATATATAAAATATATAATAT-TAAATAA
1 GATTAATATATAATATATATAATATAT-AATAA
7954 GTATTAATATATAATA-AT-TAATATATAATAA
1 G-ATTAATATATAATATATATAATATATAATAA
7985 AAAATAATAA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
30 1 0.02
31 29 0.55
32 3 0.06
33 20 0.38
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (32 bp):
GATTAATATATAATATATATAATATATAATAA
Left flanking sequence: Indices 7389 -- 7888
TTTCCTAATTCGTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTTA
ATTAAGAATTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAAT
TAATTTAATAGCTAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATA
TAAATTATCTATATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATA
ATAGATATAATAGTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTT
TTATTACATTCAGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAG
GATTTATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAG
GAGAATCAATATATAATCCTTAAATTAATATATAATCCTTAAGAG
Right flanking sequence: Indices 7985 -- 8484
AAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAAT
TTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTT
AAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCA
AAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTAT
GAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTAT
ATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATTATATAAAATAAATATATA
TTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTAC
CCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATG
Found at i:7984 original size:14 final size:14
Alignment explanation
Indices: 7911--7984 Score: 69
Period size: 14 Copynumber: 4.9 Consensus size: 14
7901 TAATATATAA
7911 AATATATAATAACTT
1 AATATATAATAA-TT
*
7926 AATATATAAAATATAT
1 AATATATAATA-AT-T
7942 AATAT-TAAATAAGTATT
1 AATATAT-AAT-A--ATT
7959 AATATATAATAATT
1 AATATATAATAATT
7973 AATATATAATAA
1 AATATATAATAA
7985 AAAATAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
14 15 0.29
15 12 0.24
16 10 0.20
17 10 0.20
18 4 0.08
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (14 bp):
AATATATAATAATT
Left flanking sequence: Indices 7411 -- 7910
TAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTTAATTAAGAATTTGTACTTGAATT
CTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTAATAGCTAATTAATTT
AATAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAATTATCTATATATAATTGT
ATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTTTA
TTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATTAT
ATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAGGA
TTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTA
AATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAA
Right flanking sequence: Indices 7985 -- 8484
AAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAAT
TTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTT
AAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCA
AAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTAT
GAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTAT
ATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATTATATAAAATAAATATATA
TTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTAC
CCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATG
Found at i:7990 original size:14 final size:13
Alignment explanation
Indices: 7959--8029 Score: 78
Period size: 14 Copynumber: 5.6 Consensus size: 13
7949 AATAAGTATT
**
7959 AATATATAATAATT
1 AATA-ATAATAAAA
7973 AATATATAATAAAA
1 AATA-ATAATAAAA
7987 AATAATAA-AAAA
1 AATAATAATAAAA
7999 AA-AATAAT-AAA
1 AATAATAATAAAA
8010 AAT-ATAATAAAA
1 AATAATAATAAAA
8022 AATAATAA
1 AATAATAA
8030 AACTAGAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
11 15 0.29
12 12 0.24
13 8 0.16
14 16 0.31
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AATAATAATAAAA
Left flanking sequence: Indices 7459 -- 7958
GAATTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATT
TAATAGCTAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAAT
TATCTATATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGA
TATAATAGTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATT
ACATTCAGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTT
ATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAA
TCAATATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAAT
ATATAATAACTTAATATATAAAATATATAATATTAAATAAGTATT
Right flanking sequence: Indices 8030 -- 8529
AACTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAA
GTAGATAAATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATAT
ATATCAAGCAATCTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGA
TTTATTTAGAAAAGATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTAT
ATAATATAAATTAAAATTATATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAA
TTATATAAAATAAATATATATTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATA
AAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATG
ACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAG
Found at i:7991 original size:24 final size:24
Alignment explanation
Indices: 7900--7994 Score: 108
Period size: 24 Copynumber: 4.0 Consensus size: 24
7890 ATTAATATAC
7900 TTAATATATAA-AATATATAATAA
1 TTAATATATAATAATATATAATAA
7923 CTTAATATATAA-AATATATAAT-A
1 -TTAATATATAATAATATATAATAA
*
7946 TTAA-ATAAGTATTAATATATAATAA
1 TTAATAT-A-TAATAATATATAATAA
* *
7971 TTAATATATAATAAAAAATAATAA
1 TTAATATATAATAATATATAATAA
7995 AAAAAAAATA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
21 2 0.03
22 5 0.08
23 3 0.05
24 44 0.71
25 6 0.10
26 2 0.03
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (24 bp):
TTAATATATAATAATATATAATAA
Left flanking sequence: Indices 7400 -- 7899
GTAATTCTTTTTAATTCTAATTATTCTTAATTATCTTAATTAGAATTCTTTTTAATTAAGAATTT
GTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTAATAG
CTAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAATTATCTA
TATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATATAAT
AGTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACATTC
AGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATA
TTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATA
TATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATAC
Right flanking sequence: Indices 7995 -- 8494
AAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGCA
ATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAAAAAGTAT
CTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAGAAAAAAA
ACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAAAAATTTA
TAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTATATAATATAAA
TTATATAATATAAATTAAAATTATATAATATAAAATTATATAAAATAAATATATATTATATAAAA
TAAATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTT
TTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGCCCG
Found at i:7995 original size:10 final size:10
Alignment explanation
Indices: 7978--8031 Score: 63
Period size: 10 Copynumber: 4.9 Consensus size: 10
7968 TAATTAATAT
7978 ATAATAAAAA
1 ATAATAAAAA
7988 ATAATAAAAAAAAA
1 ATAAT----AAAAA
8002 ATAATAAAAA
1 ATAATAAAAA
8012 TATAATAAAAA
1 -ATAATAAAAA
8023 ATAATAAAA
1 ATAATAAAA
8032 CTAGAAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
10 19 0.49
11 10 0.26
14 10 0.26
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
ATAATAAAAA
Left flanking sequence: Indices 7478 -- 7977
AATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTAATAGCTAATTAATTTAA
TAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAATTATCTATATATAATTGTAT
TTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTTTATT
CTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATTATAT
TCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAGGATT
TTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAA
TTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATAT
AAAATATATAATATTAAATAAGTATTAATATATAATAATTAATAT
Right flanking sequence: Indices 8032 -- 8531
CTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGT
AGATAAATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATAT
ATCAAGCAATCTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATT
TATTTAGAAAAGATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATAT
AATATAAATTAAAATTATATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATT
ATATAAAATAAATATATATTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAA
AAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGAC
CGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTG
Found at i:8015 original size:35 final size:36
Alignment explanation
Indices: 7966--8049 Score: 116
Period size: 35 Copynumber: 2.3 Consensus size: 36
7956 ATTAATATAT
* *
7966 AATAATTAATATATAATAAAAAATAATAAAA-AAAA
1 AATAATAAAAATATAATAAAAAATAATAAAACAAAA
* *
8001 AATAATAAAAATATAATAAAAAATAATAAAACTAGA
1 AATAATAAAAATATAATAAAAAATAATAAAACAAAA
8037 AATATATAAAAAT
1 AATA-ATAAAAAT
8050 TTCATCAGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 29 0.67
36 6 0.14
37 8 0.19
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.25
Consensus pattern (36 bp):
AATAATAAAAATATAATAAAAAATAATAAAACAAAA
Left flanking sequence: Indices 7466 -- 7965
TACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTAATAGC
TAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAATTATCTAT
ATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATATAATA
GTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACATTCA
GTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATAT
TAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATAT
ATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAAT
AACTTAATATATAAAATATATAATATTAAATAAGTATTAATATAT
Right flanking sequence: Indices 8050 -- 8549
TTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTT
AAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCA
AAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTAT
GAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTAT
ATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATTATATAAAATAAATATATA
TTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTAC
CCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGC
CATTTTATATTCCAACAAATCATAGTGGATAACATGACTTATTTG
Found at i:8028 original size:24 final size:24
Alignment explanation
Indices: 7925--8029 Score: 88
Period size: 24 Copynumber: 4.2 Consensus size: 24
7915 TATAATAACT
**
7925 TAATATATAAAATATATAATATTAAA
1 TAATA-ATAAAA-ATATAATAAAAAA
* * **
7951 TAAGT-ATTAATATATAATAATTAA
1 TAA-TAATAAAAATATAATAAAAAA
7975 TATATAATAAAAA-ATAATAAAAAAA
1 TA-ATAATAAAAATATAAT-AAAAAA
*
8000 AAATAATAAAAATATAATAAAAAA
1 TAATAATAAAAATATAATAAAAAA
8024 TAATAA
1 TAATAA
8030 AACTAGAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
24 40 0.62
25 20 0.31
26 3 0.05
27 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (24 bp):
TAATAATAAAAATATAATAAAAAA
Left flanking sequence: Indices 7425 -- 7924
CTTAATTATCTTAATTAGAATTCTTTTTAATTAAGAATTTGTACTTGAATTCTAATTAATTGAAT
ATTTTATTCTAATTAAATTAATAGCTAATTAATTTAATAGCTAATTAATTTAATAGTATATTAAT
AGTATATATAGATAATTTATATAATTATATAAATTATCTATATATAATTGTATTTATTATCTATT
ATATCTATTATTATAACTATTATATAATAATAGATATAATAGTCTAGTTTATTCTAGTTTATTAA
ATAAATAATATATATTAAATTAAATGGTTTTATTACATTCAGTTTTATTATATTCTAATATATAA
ATATCAGAAAAATTAGAATAGTAAAATAGGATTTATAATATTAAAATAGGATTTTAGTAGATTTG
AGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAATTAATATATAAT
CCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACT
Right flanking sequence: Indices 8030 -- 8529
AACTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAA
GTAGATAAATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATAT
ATATCAAGCAATCTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGA
TTTATTTAGAAAAGATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTAT
ATAATATAAATTAAAATTATATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAA
TTATATAAAATAAATATATATTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATA
AAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATG
ACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAG
Found at i:8049 original size:10 final size:11
Alignment explanation
Indices: 7962--8031 Score: 70
Period size: 11 Copynumber: 6.0 Consensus size: 11
7952 AAGTATTAAT
7962 ATATAATAATTAA
1 ATATAATAA--AA
7975 TATATAATAAAAA
1 -ATATAAT-AAAA
*
7988 ATAATAAAAAAA
1 AT-ATAATAAAA
*
8000 AAATAATAAAA
1 ATATAATAAAA
8011 ATATAATAAAA
1 ATATAATAAAA
8022 A-ATAATAAAA
1 ATATAATAAAA
8032 CTAGAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
10 9 0.18
11 19 0.38
12 7 0.14
13 6 0.12
14 7 0.14
15 2 0.04
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
ATATAATAAAA
Left flanking sequence: Indices 7462 -- 7961
TTTGTACTTGAATTCTAATTAATTGAATATTTTATTCTAATTAAATTAATAGCTAATTAATTTAA
TAGCTAATTAATTTAATAGTATATTAATAGTATATATAGATAATTTATATAATTATATAAATTAT
CTATATATAATTGTATTTATTATCTATTATATCTATTATTATAACTATTATATAATAATAGATAT
AATAGTCTAGTTTATTCTAGTTTATTAAATAAATAATATATATTAAATTAAATGGTTTTATTACA
TTCAGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATAGGATTTATA
ATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCA
ATATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATA
TAATAACTTAATATATAAAATATATAATATTAAATAAGTATTAAT
Right flanking sequence: Indices 8032 -- 8531
CTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGT
AGATAAATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATAT
ATCAAGCAATCTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATT
TATTTAGAAAAGATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATAT
AATATAAATTAAAATTATATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATT
ATATAAAATAAATATATATTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAA
AAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGAC
CGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTG
Found at i:8237 original size:15 final size:15
Alignment explanation
Indices: 8213--8244 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8203 TTTTTCTTTG
8213 ATTTAAAAAAGATTT
1 ATTTAAAAAAGATTT
*
8228 ATTTAGAAAAGATTT
1 ATTTAAAAAAGATTT
8243 AT
1 AT
8245 GAAAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (15 bp):
ATTTAAAAAAGATTT
Left flanking sequence: Indices 7713 -- 8212
TTTATTACATTCAGTTTTATTATATTCTAATATATAAATATCAGAAAAATTAGAATAGTAAAATA
GGATTTATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTA
GGAGAATCAATATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATA
TAAAATATATAATAACTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATT
AATATATAATAAAAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAA
ATATATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAA
ATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAG
CAATCTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTG
Right flanking sequence: Indices 8245 -- 8744
GAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTAT
ATAATATAAATTATATAATATAAATTAAAATTATATAATATAAAATTATATAAAATAAATATATA
TTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTAC
CCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGC
CATTTTATATTCCAACAAATCATAGTGGATAACATGACTTATTTGATTCGAAAACAAAAATAGTT
GTTATTGAAACAACAACAATCAGAAGCAGGACGATTTACATTCCTATGATATAGGATCAAATAAT
ATAGAATCAACAATTCTTCTTTTCTCATTAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTA
ATTCTAATTTTCATGATTCTTTTAAAATTCTATCTTAATCTTAAT
Found at i:8298 original size:5 final size:5
Alignment explanation
Indices: 8288--8387 Score: 55
Period size: 5 Copynumber: 20.2 Consensus size: 5
8278 TAGGAAAATT
* * *
8288 ATATA ATATA A-ATTA AAATT ATATA ATATA A-ATT ATATA ATATA A-ATTA
1 ATATA ATATA ATA-TA ATATA ATATA ATATA ATATA ATATA ATATA ATA-TA
* * * * * * *
8337 AAATT ATATA ATATA AAATT ATATA AAATA A-ATA TATATT ATATA AAATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA -ATATA ATATA ATATA
8387 A
1 A
8388 ATTATAAAAA
Statistics
Matches: 72, Mismatches: 16, Indels: 14
0.71 0.16 0.14
Matches are distributed among these distances:
4 8 0.11
5 60 0.83
6 4 0.06
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Left flanking sequence: Indices 7788 -- 8287
TATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAA
TATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATAT
AATAACTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAAT
AAAAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAA
ATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCT
TTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAAT
CAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTT
ATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATT
Right flanking sequence: Indices 8388 -- 8887
ATTATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTT
CTTTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGCCATTTTATATTCC
AACAAATCATAGTGGATAACATGACTTATTTGATTCGAAAACAAAAATAGTTGTTATTGAAACAA
CAACAATCAGAAGCAGGACGATTTACATTCCTATGATATAGGATCAAATAATATAGAATCAACAA
TTCTTCTTTTCTCATTAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTAATTCTAATTTTCA
TGATTCTTTTAAAATTCTATCTTAATCTTAATTCTGCCCGATTCTCTTATCTCGACAAAAGGTTC
ATTTATATATAATAATCGCATCATAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATT
AATCCTAAGAAATTAAGGGATCCCTCGGCGCATATCCATATTCCG
Found at i:8302 original size:14 final size:14
Alignment explanation
Indices: 8303--8402 Score: 82
Period size: 14 Copynumber: 7.3 Consensus size: 14
8293 ATATAAATTA
8303 AAATTATATAATAT
1 AAATTATATAATAT
8317 AAATTATATAATAT
1 AAATTATATAATAT
* *
8331 AAATTAAAATTATAT
1 AAATT-ATATAATAT
* * *
8346 AATATAAAATTATAT
1 AA-ATTATATAATAT
8361 AAA--ATA-AATAT
1 AAATTATATAATAT
* *
8372 ATATTATATAAAAT
1 AAATTATATAATAT
*
8386 AAATTATA-AAAAT
1 AAATTATATAATAT
8399 AAAT
1 AAAT
8403 GATAAAAAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
11 6 0.08
12 2 0.03
13 12 0.16
14 31 0.42
15 20 0.27
16 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATTATATAATAT
Left flanking sequence: Indices 7803 -- 8302
TTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATATAATCCTTAAA
TTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATAT
AAAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATAAAAA
AAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGCAATT
CTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAAAAAGTATCTT
AAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAGAAAAAAAACT
CAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAAAAATTTATAA
AAGGTTATAAATAAAAAAATTAGGAAAATTATATAATATAAATTA
Right flanking sequence: Indices 8403 -- 8902
GATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGG
TCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTGG
ATAACATGACTTATTTGATTCGAAAACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGCA
GGACGATTTACATTCCTATGATATAGGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCAT
TAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAAT
TCTATCTTAATCTTAATTCTGCCCGATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATAA
TCGCATCATAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAAATTA
AGGGATCCCTCGGCGCATATCCATATTCCGATCAAAAACTTTATT
Found at i:8307 original size:20 final size:20
Alignment explanation
Indices: 8282--8353 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
8272 AAAAATTAGG
8282 AAAATTATATAATATAAATT
1 AAAATTATATAATATAAATT
8302 AAAATTATAT-A-AT--A-T
1 AAAATTATATAATATAAATT
8317 -AAATTATATAATATAAATT
1 AAAATTATATAATATAAATT
8336 AAAATTATATAATATAAA
1 AAAATTATATAATATAAA
8354 ATTATATAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
14 9 0.20
15 2 0.04
16 3 0.07
18 3 0.07
19 2 0.04
20 27 0.59
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTATATAATATAAATT
Left flanking sequence: Indices 7782 -- 8281
TTATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAG
AATCAATATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAA
ATATATAATAACTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATA
TATAATAAAAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATAT
ATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTA
AGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAAT
CTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAA
AGATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGG
Right flanking sequence: Indices 8354 -- 8853
ATTATATAAAATAAATATATATTATATAAAATAAATTATAAAAATAAATGATAAAAAAAAATGAT
AAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCAT
GACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTGGATAACATGACTTATTT
GATTCGAAAACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGCAGGACGATTTACATTCC
TATGATATAGGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCATTAAGTCCGCTGAAGAA
ATACAATACGTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAATTCTATCTTAATCTTAA
TTCTGCCCGATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATAATCGCATCATAGCGGGT
ATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAA
Found at i:8321 original size:34 final size:34
Alignment explanation
Indices: 8283--8402 Score: 172
Period size: 34 Copynumber: 3.5 Consensus size: 34
8273 AAAATTAGGA
*
8283 AAATTATATAATATAAATTAAAATTATATAATAT
1 AAATTATATAAAATAAATTAAAATTATATAATAT
*
8317 AAATTATATAATATAAATTAAAATTATATAATAT
1 AAATTATATAAAATAAATTAAAATTATATAATAT
* *
8351 AAAATTATATAAAATAAA-TATATATTATATAAAAT
1 -AAATTATATAAAATAAATTA-AAATTATATAATAT
8386 AAATTATA-AAAATAAAT
1 AAATTATATAAAATAAAT
8403 GATAAAAAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
33 8 0.10
34 44 0.55
35 28 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (34 bp):
AAATTATATAAAATAAATTAAAATTATATAATAT
Left flanking sequence: Indices 7783 -- 8282
TATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGA
ATCAATATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAA
TATATAATAACTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATAT
ATAATAAAAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATA
TAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAA
GGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATC
TAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAA
GATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGGA
Right flanking sequence: Indices 8403 -- 8902
GATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGG
TCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTGG
ATAACATGACTTATTTGATTCGAAAACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGCA
GGACGATTTACATTCCTATGATATAGGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCAT
TAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAAT
TCTATCTTAATCTTAATTCTGCCCGATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATAA
TCGCATCATAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAAATTA
AGGGATCCCTCGGCGCATATCCATATTCCGATCAAAAACTTTATT
Found at i:8367 original size:20 final size:19
Alignment explanation
Indices: 8282--8389 Score: 99
Period size: 20 Copynumber: 6.0 Consensus size: 19
8272 AAAAATTAGG
*
8282 AAAATTATATAATATAAATT
1 AAAATTATATAAAATAAA-T
8302 AAAATTATAT--AAT--AT
1 AAAATTATATAAAATAAAT
*
8317 -AAATTATATAATATAAATT
1 AAAATTATATAAAATAAA-T
8336 AAAATTATAT--AAT--AT
1 AAAATTATATAAAATAAAT
8351 AAAATTATATAAAATAAAT
1 AAAATTATATAAAATAAAT
*
8370 ATATATTATATAAAATAAAT
1 A-AAATTATATAAAATAAAT
8390 TATAAAAATA
Statistics
Matches: 73, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
14 9 0.12
15 12 0.16
16 4 0.05
17 3 0.04
18 5 0.07
19 4 0.05
20 36 0.49
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTATATAAAATAAAT
Left flanking sequence: Indices 7782 -- 8281
TTATAATATTAAAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAG
AATCAATATATAATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAA
ATATATAATAACTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATA
TATAATAAAAAATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATAT
ATAAAAATTTCATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTA
AGGGCTTTAAAAAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAAT
CTAAATCAAAGAAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAA
AGATTTATGAAAAATTTATAAAAGGTTATAAATAAAAAAATTAGG
Right flanking sequence: Indices 8390 -- 8889
TATAAAAATAAATGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCT
TTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGCCATTTTATATTCCAA
CAAATCATAGTGGATAACATGACTTATTTGATTCGAAAACAAAAATAGTTGTTATTGAAACAACA
ACAATCAGAAGCAGGACGATTTACATTCCTATGATATAGGATCAAATAATATAGAATCAACAATT
CTTCTTTTCTCATTAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTAATTCTAATTTTCATG
ATTCTTTTAAAATTCTATCTTAATCTTAATTCTGCCCGATTCTCTTATCTCGACAAAAGGTTCAT
TTATATATAATAATCGCATCATAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATTAA
TCCTAAGAAATTAAGGGATCCCTCGGCGCATATCCATATTCCGAT
Found at i:8368 original size:49 final size:48
Alignment explanation
Indices: 8293--8401 Score: 148
Period size: 49 Copynumber: 2.2 Consensus size: 48
8283 AAATTATATA
* *
8293 ATATAAATTAAAATTATATAATATAAAT-TATATAATATAAATTAAAATT
1 ATATAAA-TAAAATTATATAAAATAAATATATATAATATAAAAT-AAATT
*
8342 ATATAATATAAAATTATATAAAATAAATATATATTATATAAAATAAATT
1 ATATAA-ATAAAATTATATAAAATAAATATATATAATATAAAATAAATT
*
8391 ATAAAAATAAA
1 ATATAAATAAA
8402 TGATAAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
48 5 0.09
49 35 0.65
50 14 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (48 bp):
ATATAAATAAAATTATATAAAATAAATATATATAATATAAAATAAATT
Left flanking sequence: Indices 7793 -- 8292
AAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATAT
AATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAA
CTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAA
ATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTC
ATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAA
AAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAG
AAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAA
AAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATA
Right flanking sequence: Indices 8402 -- 8901
TGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGG
GTCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTG
GATAACATGACTTATTTGATTCGAAAACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGC
AGGACGATTTACATTCCTATGATATAGGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCA
TTAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAA
TTCTATCTTAATCTTAATTCTGCCCGATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATA
ATCGCATCATAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAAATT
AAGGGATCCCTCGGCGCATATCCATATTCCGATCAAAAACTTTAT
Found at i:8374 original size:15 final size:15
Alignment explanation
Indices: 8293--8401 Score: 87
Period size: 15 Copynumber: 6.8 Consensus size: 15
8283 AAATTATATA
*
8293 ATATAAATTAAAATT
1 ATATAAAATAAAATT
*
8308 ATATAATATAAATTATAT
1 ATATAAAATAAA--AT-T
*
8326 AATATAAATTAAAATT
1 -ATATAAAATAAAATT
*
8342 ATATAATATAAAATT
1 ATATAAAATAAAATT
8357 ATATAAAATAAATATAT
1 ATATAAAATAAA-AT-T
8374 ATTATATAAA-ATAAATT
1 A-TATA-AAATA-AAATT
8391 ATA-AAAATAAA
1 ATATAAAATAAA
8402 TGATAAAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
14 5 0.06
15 36 0.47
16 5 0.06
17 8 0.10
18 8 0.10
19 15 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATAAAATAAAATT
Left flanking sequence: Indices 7793 -- 8292
AAATAGGATTTTAGTAGATTTGAGTATTAATTAATATAATTGAAGTATTAGGAGAATCAATATAT
AATCCTTAAATTAATATATAATCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAA
CTTAATATATAAAATATATAATATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAA
ATAATAAAAAAAAAATAATAAAAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTC
ATCAGCAATTCTTCCAATTTCATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAA
AAAGTATCTTAAACTCAATCTTCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAG
AAAAAAAACTCAAATAAATTTTTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAA
AAATTTATAAAAGGTTATAAATAAAAAAATTAGGAAAATTATATA
Right flanking sequence: Indices 8402 -- 8901
TGATAAAAAAAAATGATAAAAAAAAAAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGG
GTCCCTTTTATTTTCATGACCGAGCCCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTG
GATAACATGACTTATTTGATTCGAAAACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGC
AGGACGATTTACATTCCTATGATATAGGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCA
TTAAGTCCGCTGAAGAAATACAATACGTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAA
TTCTATCTTAATCTTAATTCTGCCCGATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATA
ATCGCATCATAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAAATT
AAGGGATCCCTCGGCGCATATCCATATTCCGATCAAAAACTTTAT
Found at i:8422 original size:12 final size:12
Alignment explanation
Indices: 8379--8426 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
8369 TATATATTAT
* *
8379 ATAAAATAAATT
1 ATAAAAAAAATG
8391 ATAAAAATAAATG
1 ATAAAAA-AAATG
8404 ATAAAAAAAAATG
1 AT-AAAAAAAATG
8417 ATAAAAAAAA
1 ATAAAAAAAA
8427 AAAAAGAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 14 0.44
13 13 0.41
14 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (12 bp):
ATAAAAAAAATG
Left flanking sequence: Indices 7879 -- 8378
TCCTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATATAAAATATATAA
TATTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATAAAAAAAAAATAATAA
AAATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTC
ATTTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCT
TCCAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAGAAAAAAAACTCAAATAAATTT
TTTTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAAAAATTTATAAAAGGTTATAAA
TAAAAAAATTAGGAAAATTATATAATATAAATTAAAATTATATAATATAAATTATATAATATAAA
TTAAAATTATATAATATAAAATTATATAAAATAAATATATATTAT
Right flanking sequence: Indices 8427 -- 8926
AAAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGC
CCGGATCATGGGCCATTTTATATTCCAACAAATCATAGTGGATAACATGACTTATTTGATTCGAA
AACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGCAGGACGATTTACATTCCTATGATAT
AGGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCATTAAGTCCGCTGAAGAAATACAATA
CGTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAATTCTATCTTAATCTTAATTCTGCCC
GATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATAATCGCATCATAGCGGGTATAGTTTA
GTGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAAATTAAGGGATCCCTCGGCGCATATCCAT
ATTCCGATCAAAAACTTTATTTCTTACAAGGATTAAATCCTTTAC
Found at i:8428 original size:14 final size:13
Alignment explanation
Indices: 8381--8427 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
8371 TATATTATAT
* *
8381 AAAATAAATTATA
1 AAAAAAAATGATA
*
8394 AAAATAAATGATA
1 AAAAAAAATGATA
8407 AAAAAAAATGATA
1 AAAAAAAATGATA
8420 AAAAAAAA
1 AAAAAAAA
8428 AAAAGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (13 bp):
AAAAAAAATGATA
Left flanking sequence: Indices 7881 -- 8380
CTTAAGAGGATTAATATACTTAATATATAAAATATATAATAACTTAATATATAAAATATATAATA
TTAAATAAGTATTAATATATAATAATTAATATATAATAAAAAATAATAAAAAAAAAATAATAAAA
ATATAATAAAAAATAATAAAACTAGAAATATATAAAAATTTCATCAGCAATTCTTCCAATTTCAT
TTAGATTAAAGTAAATAAAGTAGATAAATTAAGGGCTTTAAAAAAGTATCTTAAACTCAATCTTC
CAATCAAAAAATCTAATATATATCAAGCAATCTAAATCAAAGAAAAAAAACTCAAATAAATTTTT
TTCTTTGATTTAAAAAAGATTTATTTAGAAAAGATTTATGAAAAATTTATAAAAGGTTATAAATA
AAAAAATTAGGAAAATTATATAATATAAATTAAAATTATATAATATAAATTATATAATATAAATT
AAAATTATATAATATAAAATTATATAAAATAAATATATATTATAT
Right flanking sequence: Indices 8428 -- 8927
AAAAGAAACTACCCCTTTTTTTTTTCTTTTTTCCGAGGGGTCCCTTTTATTTTCATGACCGAGCC
CGGATCATGGGCCATTTTATATTCCAACAAATCATAGTGGATAACATGACTTATTTGATTCGAAA
ACAAAAATAGTTGTTATTGAAACAACAACAATCAGAAGCAGGACGATTTACATTCCTATGATATA
GGATCAAATAATATAGAATCAACAATTCTTCTTTTCTCATTAAGTCCGCTGAAGAAATACAATAC
GTCAACGCTCTAATTCTAATTTTCATGATTCTTTTAAAATTCTATCTTAATCTTAATTCTGCCCG
ATTCTCTTATCTCGACAAAAGGTTCATTTATATATAATAATCGCATCATAGCGGGTATAGTTTAG
TGGTAAAAGTGTGATTCGTTCTATTAATCCTAAGAAATTAAGGGATCCCTCGGCGCATATCCATA
TTCCGATCAAAAACTTTATTTCTTACAAGGATTAAATCCTTTACC
Found at i:9684 original size:16 final size:16
Alignment explanation
Indices: 9663--9695 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9653 TCTATATATT
9663 TTCATTTTCATCCATA
1 TTCATTTTCATCCATA
9679 TTCATTTTCATCCATA
1 TTCATTTTCATCCATA
9695 T
1 T
9696 ATATATACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (16 bp):
TTCATTTTCATCCATA
Left flanking sequence: Indices 9163 -- 9662
GAAGCAAAATAAGTATTAAACGACGACTTTGGTTTACTATAGGTATCGACGTTTTGTTTTAACTC
GGTAGAAACAAAAAGCTTTTCCTAAGGATTCTCTCAAATAGAAATAGAGAACGAAGTAACTAGAA
AGATTATTAAAACCCCTCTCTCTCGTGTCTAGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATC
TATTAAAATAAAATAGCGAAAGGCTGACATAGATGTTATGGGTCAAATTTTTTTTCGCTCACGTC
TTATAGCTGGAAATTTTTCCAGCTTCCATAAAGGAGCCGAATGAAACCAAAGTTTCATATTCGGT
TTTGAATTAGAGATGTTAAAGATGATGAATCAACATCGACTATAACCCCTAGCCTTCCAAGCTAA
CGATGCGGGTTCGATTCCCGCTACCCGCTTCATCCATCCATATATCCATATATATACTTTATATT
TTCATTATATTTTCATCCAAAATCCAAATATATACTCTATATATT
Right flanking sequence: Indices 9696 -- 10195
ATATATACTCTATATATATATATACTCTATATATATACTCTATATATACTCTATATCTCTATATA
TAGAGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTATTTTAGTATA
TTTTTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATT
ATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGT
ATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATA
GAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAA
TCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAG
CAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTG
Found at i:9699 original size:2 final size:2
Alignment explanation
Indices: 9692--9772 Score: 54
Period size: 2 Copynumber: 38.5 Consensus size: 2
9682 ATTTTCATCC
* *
9692 AT AT AT AT AT ACT CT AT AT AT AT AT AT ACT CT AT AT AT AT ACT
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T
* * * * * *
9735 CT AT AT AT ACT CT AT AT CT CT AT AT AT AG AG AT AT AT A
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT A
9773 GAGATATAGA
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
2 59 0.94
3 4 0.06
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 9192 -- 9691
TGGTTTACTATAGGTATCGACGTTTTGTTTTAACTCGGTAGAAACAAAAAGCTTTTCCTAAGGAT
TCTCTCAAATAGAAATAGAGAACGAAGTAACTAGAAAGATTATTAAAACCCCTCTCTCTCGTGTC
TAGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAAAATAAAATAGCGAAAGGCTGACA
TAGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAGCTGGAAATTTTTCCAGCTTCCAT
AAAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAATTAGAGATGTTAAAGATGATGAA
TCAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCT
TCATCCATCCATATATCCATATATATACTTTATATTTTCATTATATTTTCATCCAAAATCCAAAT
ATATACTCTATATATTTTCATTTTCATCCATATTCATTTTCATCC
Right flanking sequence: Indices 9773 -- 10272
GAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTATTTTAGTATATTTTTTATTTTA
GTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTATACTATATCTG
TAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATATTACTAGAA
TGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAATATTAATAC
TATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCCATCATTTAG
TTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAA
TAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCT
TTGGTATAGGTTCAAATCCTATTGGACGCAATATTTTTTCATTCC
Found at i:9711 original size:13 final size:13
Alignment explanation
Indices: 9710--9751 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
9700 ATACTCTATA
9710 TATATATATACTC
1 TATATATATACTC
9723 TATATATATACTC
1 TATATATATACTC
9736 --TATATATACTC
1 TATATATATACTC
9747 TATAT
1 TATAT
9752 CTCTATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.41
13 16 0.59
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (13 bp):
TATATATATACTC
Left flanking sequence: Indices 9210 -- 9709
GACGTTTTGTTTTAACTCGGTAGAAACAAAAAGCTTTTCCTAAGGATTCTCTCAAATAGAAATAG
AGAACGAAGTAACTAGAAAGATTATTAAAACCCCTCTCTCTCGTGTCTAGAGGGATCATCTAGAA
AGCGCGTTGTTTTGAATCTATTAAAATAAAATAGCGAAAGGCTGACATAGATGTTATGGGTCAAA
TTTTTTTTCGCTCACGTCTTATAGCTGGAAATTTTTCCAGCTTCCATAAAGGAGCCGAATGAAAC
CAAAGTTTCATATTCGGTTTTGAATTAGAGATGTTAAAGATGATGAATCAACATCGACTATAACC
CCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTTCATCCATCCATATATCC
ATATATATACTTTATATTTTCATTATATTTTCATCCAAAATCCAAATATATACTCTATATATTTT
CATTTTCATCCATATTCATTTTCATCCATATATATATACTCTATA
Right flanking sequence: Indices 9752 -- 10251
CTCTATATATAGAGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTAT
TTTAGTATATTTTTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAAT
ATTGAAATTATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGA
ATGTACTGTATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAA
ATAGTAATAGAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTAT
AAAGTTTAATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATC
ATTTATCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATA
GGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTG
Found at i:9714 original size:17 final size:17
Alignment explanation
Indices: 9692--9762 Score: 87
Period size: 17 Copynumber: 4.3 Consensus size: 17
9682 ATTTTCATCC
9692 ATATATATATACTCTAT
1 ATATATATATACTCTAT
9709 ATATATATATACTC---
1 ATATATATATACTCTAT
9723 -TATATATATACTCTAT
1 ATATATATATACTCTAT
*
9739 ATATACTCTATATCTCTAT
1 ATATA-TATATA-CTCTAT
9758 ATATA
1 ATATA
9763 GAGATATATA
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
13 13 0.28
17 18 0.38
18 5 0.11
19 11 0.23
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATATATATACTCTAT
Left flanking sequence: Indices 9192 -- 9691
TGGTTTACTATAGGTATCGACGTTTTGTTTTAACTCGGTAGAAACAAAAAGCTTTTCCTAAGGAT
TCTCTCAAATAGAAATAGAGAACGAAGTAACTAGAAAGATTATTAAAACCCCTCTCTCTCGTGTC
TAGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAAAATAAAATAGCGAAAGGCTGACA
TAGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAGCTGGAAATTTTTCCAGCTTCCAT
AAAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAATTAGAGATGTTAAAGATGATGAA
TCAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCT
TCATCCATCCATATATCCATATATATACTTTATATTTTCATTATATTTTCATCCAAAATCCAAAT
ATATACTCTATATATTTTCATTTTCATCCATATTCATTTTCATCC
Right flanking sequence: Indices 9763 -- 10262
GAGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTATTTTAGTATATT
TTTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTAT
ACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTAT
ATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGA
ATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATC
CATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCA
AGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTC
TTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATT
Found at i:9729 original size:30 final size:32
Alignment explanation
Indices: 9693--9762 Score: 117
Period size: 30 Copynumber: 2.2 Consensus size: 32
9683 TTTTCATCCA
9693 TATATATATACTCTATATATA-TATATA-CTC
1 TATATATATACTCTATATATACTATATATCTC
*
9723 TATATATATACTCTATATATACTCTATATCTC
1 TATATATATACTCTATATATACTATATATCTC
9755 TATATATA
1 TATATATA
9763 GAGATATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
30 21 0.57
31 5 0.14
32 11 0.30
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.47
Consensus pattern (32 bp):
TATATATATACTCTATATATACTATATATCTC
Left flanking sequence: Indices 9193 -- 9692
GGTTTACTATAGGTATCGACGTTTTGTTTTAACTCGGTAGAAACAAAAAGCTTTTCCTAAGGATT
CTCTCAAATAGAAATAGAGAACGAAGTAACTAGAAAGATTATTAAAACCCCTCTCTCTCGTGTCT
AGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAAAATAAAATAGCGAAAGGCTGACAT
AGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAGCTGGAAATTTTTCCAGCTTCCATA
AAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAATTAGAGATGTTAAAGATGATGAAT
CAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTT
CATCCATCCATATATCCATATATATACTTTATATTTTCATTATATTTTCATCCAAAATCCAAATA
TATACTCTATATATTTTCATTTTCATCCATATTCATTTTCATCCA
Right flanking sequence: Indices 9763 -- 10262
GAGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTATTTTAGTATATT
TTTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTAT
ACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTAT
ATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGA
ATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATC
CATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCA
AGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTC
TTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATT
Found at i:9769 original size:10 final size:10
Alignment explanation
Indices: 9756--9797 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
9746 CTATATCTCT
9756 ATATATAGAG
1 ATATATAGAG
9766 ATATATAGAG
1 ATATATAGAG
9776 --ATATAGAG
1 ATATATAGAG
*
9784 -TATAGAGAG
1 ATATATAGAG
9793 ATATA
1 ATATA
9798 GAGTATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 8 0.28
9 7 0.24
10 14 0.48
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (10 bp):
ATATATAGAG
Left flanking sequence: Indices 9256 -- 9755
TTCTCTCAAATAGAAATAGAGAACGAAGTAACTAGAAAGATTATTAAAACCCCTCTCTCTCGTGT
CTAGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAAAATAAAATAGCGAAAGGCTGAC
ATAGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAGCTGGAAATTTTTCCAGCTTCCA
TAAAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAATTAGAGATGTTAAAGATGATGA
ATCAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGC
TTCATCCATCCATATATCCATATATATACTTTATATTTTCATTATATTTTCATCCAAAATCCAAA
TATATACTCTATATATTTTCATTTTCATCCATATTCATTTTCATCCATATATATATACTCTATAT
ATATATATACTCTATATATATACTCTATATATACTCTATATCTCT
Right flanking sequence: Indices 9798 -- 10297
GAGTATATTTCTTTTTTATTTTAGTATATTTTTTATTTTAGTATATTTAAATAGTGATTTCAATA
TTGATTAATATATTTCAATATTGAAATTATACTATATCTGTAATGTATTTATTATCTATATTTTG
TTATCTATATATTACTAGAATGTACTGTATATTACTAGAATGTAATAATAATAAAAGTAATAATA
AACAATAAATAATAATAAAATAGTAATAGAATATTAATACTATAATTATAGAAATACAATTTCTA
ATATAGAATAGAATTCTATAAAGTTTAATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTT
TTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGC
GTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGG
ACGCAATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATAT
Found at i:9792 original size:17 final size:17
Alignment explanation
Indices: 9758--9804 Score: 76
Period size: 17 Copynumber: 2.7 Consensus size: 17
9748 ATATCTCTAT
*
9758 ATATAGAGATATATAGAG
1 ATATAGAG-TATAGAGAG
9776 ATATAGAGTATAGAGAG
1 ATATAGAGTATAGAGAG
9793 ATATAGAGTATA
1 ATATAGAGTATA
9805 TTTCTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 20 0.71
18 8 0.29
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.28
Consensus pattern (17 bp):
ATATAGAGTATAGAGAG
Left flanking sequence: Indices 9258 -- 9757
CTCTCAAATAGAAATAGAGAACGAAGTAACTAGAAAGATTATTAAAACCCCTCTCTCTCGTGTCT
AGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAAAATAAAATAGCGAAAGGCTGACAT
AGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAGCTGGAAATTTTTCCAGCTTCCATA
AAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAATTAGAGATGTTAAAGATGATGAAT
CAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTT
CATCCATCCATATATCCATATATATACTTTATATTTTCATTATATTTTCATCCAAAATCCAAATA
TATACTCTATATATTTTCATTTTCATCCATATTCATTTTCATCCATATATATATACTCTATATAT
ATATATACTCTATATATATACTCTATATATACTCTATATCTCTAT
Right flanking sequence: Indices 9805 -- 10304
TTTCTTTTTTATTTTAGTATATTTTTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTA
ATATATTTCAATATTGAAATTATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTA
TATATTACTAGAATGTACTGTATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATA
AATAATAATAAAATAGTAATAGAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGA
ATAGAATTCTATAAAGTTTAATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATA
TTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATT
GTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAAT
ATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAATATT
Found at i:9823 original size:21 final size:20
Alignment explanation
Indices: 9799--9845 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 20
9789 AGAGATATAG
9799 AGTATATTTCTTTTTTATTTT
1 AGTATATTT-TTTTTTATTTT
9820 AGTATA---TTTTTTATTTT
1 AGTATATTTTTTTTTATTTT
9837 AGTATATTT
1 AGTATATTT
9846 AAATAGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 17 0.74
21 6 0.26
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.68
Consensus pattern (20 bp):
AGTATATTTTTTTTTATTTT
Left flanking sequence: Indices 9299 -- 9798
TTAAAACCCCTCTCTCTCGTGTCTAGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAA
AATAAAATAGCGAAAGGCTGACATAGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAG
CTGGAAATTTTTCCAGCTTCCATAAAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAA
TTAGAGATGTTAAAGATGATGAATCAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGC
GGGTTCGATTCCCGCTACCCGCTTCATCCATCCATATATCCATATATATACTTTATATTTTCATT
ATATTTTCATCCAAAATCCAAATATATACTCTATATATTTTCATTTTCATCCATATTCATTTTCA
TCCATATATATATACTCTATATATATATATACTCTATATATATACTCTATATATACTCTATATCT
CTATATATAGAGATATATAGAGATATAGAGTATAGAGAGATATAG
Right flanking sequence: Indices 9846 -- 10345
AAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTATACTATATCTGTAATGTAT
TTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATATTACTAGAATGTAATAA
TAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAATATTAATACTATAATTA
TAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCCATCATTTAGTTAAATAT
GCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACA
AATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATA
GGTTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAA
TATTTTTTTATTCCATTTTATTCTAATTTTATTCCATATTATAAT
Found at i:9831 original size:17 final size:17
Alignment explanation
Indices: 9809--9845 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
9799 AGTATATTTC
9809 TTTTTTATTTTAGTATA
1 TTTTTTATTTTAGTATA
9826 TTTTTTATTTTAGTATA
1 TTTTTTATTTTAGTATA
9843 TTT
1 TTT
9846 AAATAGTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTTTATTTTAGTATA
Left flanking sequence: Indices 9309 -- 9808
TCTCTCTCGTGTCTAGAGGGATCATCTAGAAAGCGCGTTGTTTTGAATCTATTAAAATAAAATAG
CGAAAGGCTGACATAGATGTTATGGGTCAAATTTTTTTTCGCTCACGTCTTATAGCTGGAAATTT
TTCCAGCTTCCATAAAGGAGCCGAATGAAACCAAAGTTTCATATTCGGTTTTGAATTAGAGATGT
TAAAGATGATGAATCAACATCGACTATAACCCCTAGCCTTCCAAGCTAACGATGCGGGTTCGATT
CCCGCTACCCGCTTCATCCATCCATATATCCATATATATACTTTATATTTTCATTATATTTTCAT
CCAAAATCCAAATATATACTCTATATATTTTCATTTTCATCCATATTCATTTTCATCCATATATA
TATACTCTATATATATATATACTCTATATATATACTCTATATATACTCTATATCTCTATATATAG
AGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTC
Right flanking sequence: Indices 9846 -- 10345
AAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTATACTATATCTGTAATGTAT
TTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATATTACTAGAATGTAATAA
TAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAATATTAATACTATAATTA
TAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCCATCATTTAGTTAAATAT
GCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACA
AATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATA
GGTTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAA
TATTTTTTTATTCCATTTTATTCTAATTTTATTCCATATTATAAT
Found at i:10288 original size:21 final size:21
Alignment explanation
Indices: 10264--10342 Score: 86
Period size: 21 Copynumber: 3.8 Consensus size: 21
10254 CGCAATATTT
*
10264 TTTCATTCCATTTTATTCTAA
1 TTTCATTCCATATTATTCTAA
* * **
10285 TTTCATTCCATATTAATATTT
1 TTTCATTCCATATTATTCTAA
* *
10306 TTTTATTCCATTTTATTCTAA
1 TTTCATTCCATATTATTCTAA
*
10327 TTTTATTCCATATTAT
1 TTTCATTCCATATTAT
10343 AATCCATATT
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.25, C:0.15, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTCATTCCATATTATTCTAA
Left flanking sequence: Indices 9764 -- 10263
AGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTATTTTAGTATATTT
TTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTATA
CTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATA
TTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAA
TATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCC
ATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAA
GAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCT
TCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATTT
Right flanking sequence: Indices 10343 -- 10842
AATCCATATTATAATATATATATTTTAATTTAGTATGTATATAGTATATATATATTATATATTTT
ATATATTATATATTTTTTTATATATTTTTTTTTGAATTGAATATATTATTGAATTTTATTATTGA
ATTTTTTTTTTTCATTTTATTTATTTATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGATA
TTTTGAATGGTTTGAATAAAAGACGTTTATACTTATTGTATAACTTAGTTATAGCTTCTACTTAA
TTTAATTTATTTTTATTTATTTTTTGTTTTATAGTTTATATTTATAATTTGTTTATAATTTGATT
TTTATAATTTTATTTAAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTA
AGAGTGATCAATTTCTTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCT
TCTTTCAAAAGGGCTTCCGCTTCTTCGGTGAATGTTTTGGTAGAA
Found at i:10316 original size:42 final size:42
Alignment explanation
Indices: 10257--10341 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
10247 TATTGGACGC
10257 AATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATT
1 AATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATT
* *
10299 AATATTTTTTTATTCCATTTTATTCTAATTTTATTCCATATT
1 AATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATT
10341 A
1 A
10342 TAATCCATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.14, G:0.00, T:0.59
Consensus pattern (42 bp):
AATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATT
Left flanking sequence: Indices 9757 -- 10256
TATATAGAGATATATAGAGATATAGAGTATAGAGAGATATAGAGTATATTTCTTTTTTATTTTAG
TATATTTTTTATTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGA
AATTATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTA
CTGTATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGT
AATAGAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGT
TTAATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTA
TCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACA
GAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGC
Right flanking sequence: Indices 10342 -- 10841
TAATCCATATTATAATATATATATTTTAATTTAGTATGTATATAGTATATATATATTATATATTT
TATATATTATATATTTTTTTATATATTTTTTTTTGAATTGAATATATTATTGAATTTTATTATTG
AATTTTTTTTTTTCATTTTATTTATTTATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGAT
ATTTTGAATGGTTTGAATAAAAGACGTTTATACTTATTGTATAACTTAGTTATAGCTTCTACTTA
ATTTAATTTATTTTTATTTATTTTTTGTTTTATAGTTTATATTTATAATTTGTTTATAATTTGAT
TTTTATAATTTTATTTAAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATT
AAGAGTGATCAATTTCTTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGC
TTCTTTCAAAAGGGCTTCCGCTTCTTCGGTGAATGTTTTGGTAGA
Found at i:10350 original size:12 final size:12
Alignment explanation
Indices: 10333--10357 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10323 CTAATTTTAT
10333 TCCATATTATAA
1 TCCATATTATAA
10345 TCCATATTATAA
1 TCCATATTATAA
10357 T
1 T
10358 ATATATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TCCATATTATAA
Left flanking sequence: Indices 9833 -- 10332
TTTTAGTATATTTAAATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTATACTAT
ATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATATTAC
TAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAATATT
AATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCCATCA
TTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAA
AAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTA
AACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATTCTAATTT
CATTCCATATTAATATTTTTTTATTCCATTTTATTCTAATTTTAT
Right flanking sequence: Indices 10358 -- 10857
ATATATATTTTAATTTAGTATGTATATAGTATATATATATTATATATTTTATATATTATATATTT
TTTTATATATTTTTTTTTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTCAT
TTTATTTATTTATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTTGA
ATAAAAGACGTTTATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTTATTTTTA
TTTATTTTTTGTTTTATAGTTTATATTTATAATTTGTTTATAATTTGATTTTTATAATTTTATTT
AAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATTTC
TTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGGCT
TCCGCTTCTTCGGTGAATGTTTTGGTAGAAGATATGATTTTTTGG
Found at i:10394 original size:9 final size:9
Alignment explanation
Indices: 10380--10420 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
10370 ATTTAGTATG
10380 TATATAGTA-
1 TATATA-TAT
10389 TATATATAT
1 TATATATAT
10398 TATATAT-T
1 TATATATAT
10406 T-TATATAT
1 TATATATAT
10414 TATATAT
1 TATATAT
10421 TTTTTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
7 5 0.17
8 6 0.21
9 18 0.62
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
TATATATAT
Left flanking sequence: Indices 9880 -- 10379
ATATTGAAATTATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTA
GAATGTACTGTATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATA
AAATAGTAATAGAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCT
ATAAAGTTTAATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTA
TCATTTATCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGA
TAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATTTTTTCAT
TCCATTTTATTCTAATTTCATTCCATATTAATATTTTTTTATTCCATTTTATTCTAATTTTATTC
CATATTATAATCCATATTATAATATATATATTTTAATTTAGTATG
Right flanking sequence: Indices 10421 -- 10920
TTTTTTATATATTTTTTTTTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTC
ATTTTATTTATTTATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTT
GAATAAAAGACGTTTATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTTATTTT
TATTTATTTTTTGTTTTATAGTTTATATTTATAATTTGTTTATAATTTGATTTTTATAATTTTAT
TTAAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATT
TCTTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGG
CTTCCGCTTCTTCGGTGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTCGTT
TTTAAGTAAGTACGTAACTCAACGAGAAATTTCCTTACTTGTGAA
Found at i:10410 original size:16 final size:16
Alignment explanation
Indices: 10391--10423 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
10381 ATATAGTATA
10391 TATATATTATATATTT
1 TATATATTATATATTT
10407 TATATATTATATATTT
1 TATATATTATATATTT
10423 T
1 T
10424 TTTATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATATTATATATTT
Left flanking sequence: Indices 9891 -- 10390
ATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGT
ATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATA
GAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAA
TCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAG
CAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGG
TCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATT
CTAATTTCATTCCATATTAATATTTTTTTATTCCATTTTATTCTAATTTTATTCCATATTATAAT
CCATATTATAATATATATATTTTAATTTAGTATGTATATAGTATA
Right flanking sequence: Indices 10424 -- 10923
TTTATATATTTTTTTTTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTCATT
TTATTTATTTATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTTGAA
TAAAAGACGTTTATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTTATTTTTAT
TTATTTTTTGTTTTATAGTTTATATTTATAATTTGTTTATAATTTGATTTTTATAATTTTATTTA
AGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATTTCT
TTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGGCTT
CCGCTTCTTCGGTGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTCGTTTTT
AAGTAAGTACGTAACTCAACGAGAAATTTCCTTACTTGTGAAATT
Found at i:10421 original size:7 final size:7
Alignment explanation
Indices: 10348--10433 Score: 51
Period size: 7 Copynumber: 12.7 Consensus size: 7
10338 ATTATAATCC
10348 ATATTAT
1 ATATTAT
10355 A-ATATAT
1 ATAT-TAT
*
10362 ATATTTT
1 ATATTAT
10369 A-ATT-T
1 ATATTAT
10374 AGTATGTAT
1 A-TAT-TAT
*
10383 ATAGTAT
1 ATATTAT
10390 ATA-TAT
1 ATATTAT
10396 AT-TATAT
1 ATAT-TAT
*
10403 ATTTTAT
1 ATATTAT
10410 ATATTAT
1 ATATTAT
10417 ATATT-T
1 ATATTAT
*
10423 -TTTTAT
1 ATATTAT
10429 ATATT
1 ATATT
10434 TTTTTTTGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 22
0.70 0.06 0.24
Matches are distributed among these distances:
5 5 0.08
6 12 0.19
7 38 0.60
8 6 0.10
9 2 0.03
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (7 bp):
ATATTAT
Left flanking sequence: Indices 9848 -- 10347
ATAGTGATTTCAATATTGATTAATATATTTCAATATTGAAATTATACTATATCTGTAATGTATTT
ATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATATTACTAGAATGTAATAATA
ATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAATATTAATACTATAATTATA
GAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCCATCATTTAGTTAAATATGC
AATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACAAA
TTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGG
TTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAATA
TTTTTTTATTCCATTTTATTCTAATTTTATTCCATATTATAATCC
Right flanking sequence: Indices 10434 -- 10933
TTTTTTTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTCATTTTATTTATTT
ATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTTGAATAAAAGACGT
TTATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTTATTTTTATTTATTTTTTG
TTTTATAGTTTATATTTATAATTTGTTTATAATTTGATTTTTATAATTTTATTTAAGTATTTTGA
CTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATTTCTTTATACTTGT
TCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGGCTTCCGCTTCTTC
GGTGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTCGTTTTTAAGTAAGTAC
GTAACTCAACGAGAAATTTCCTTACTTGTGAAATTTCGAATGAAT
Found at i:10430 original size:12 final size:12
Alignment explanation
Indices: 10413--10438 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10403 ATTTTATATA
10413 TTATATATTTTT
1 TTATATATTTTT
10425 TTATATATTTTT
1 TTATATATTTTT
10437 TT
1 TT
10439 TTGAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATATATTTTT
Left flanking sequence: Indices 9913 -- 10412
ATTATCTATATTTTGTTATCTATATATTACTAGAATGTACTGTATATTACTAGAATGTAATAATA
ATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAATAGAATATTAATACTATAATTATA
GAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTTAATCCATCATTTAGTTAAATATGC
AATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACAAA
TTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGG
TTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAATA
TTTTTTTATTCCATTTTATTCTAATTTTATTCCATATTATAATCCATATTATAATATATATATTT
TAATTTAGTATGTATATAGTATATATATATTATATATTTTATATA
Right flanking sequence: Indices 10439 -- 10938
TTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTCATTTTATTTATTTATTTT
TTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTTGAATAAAAGACGTTTATA
CTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTTATTTTTATTTATTTTTTGTTTTA
TAGTTTATATTTATAATTTGTTTATAATTTGATTTTTATAATTTTATTTAAGTATTTTGACTTAA
GTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATTTCTTTATACTTGTTCCTG
AAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGGCTTCCGCTTCTTCGGTGA
ATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTCGTTTTTAAGTAAGTACGTAAC
TCAACGAGAAATTTCCTTACTTGTGAAATTTCGAATGAATCAAGA
Found at i:10435 original size:9 final size:9
Alignment explanation
Indices: 10389--10435 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
10379 GTATATAGTA
*
10389 TATATATAT
1 TATATATTT
10398 TATATATTT
1 TATATATTT
*
10407 TATATATTA
1 TATATATTT
*
10416 TATATTTTTT
1 TATA-TATTT
10426 TATATATTT
1 TATATATTT
10435 T
1 T
10436 TTTTTGAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
9 25 0.78
10 7 0.22
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TATATATTT
Left flanking sequence: Indices 9889 -- 10388
TTATACTATATCTGTAATGTATTTATTATCTATATTTTGTTATCTATATATTACTAGAATGTACT
GTATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAGTAA
TAGAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAGTTT
AATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATC
AGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGA
GGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATTTTTTCATTCCATTTTA
TTCTAATTTCATTCCATATTAATATTTTTTTATTCCATTTTATTCTAATTTTATTCCATATTATA
ATCCATATTATAATATATATATTTTAATTTAGTATGTATATAGTA
Right flanking sequence: Indices 10436 -- 10935
TTTTTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTCATTTTATTTATTTAT
TTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTTGAATAAAAGACGTTT
ATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTTATTTTTATTTATTTTTTGTT
TTATAGTTTATATTTATAATTTGTTTATAATTTGATTTTTATAATTTTATTTAAGTATTTTGACT
TAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATTTCTTTATACTTGTTC
CTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGGCTTCCGCTTCTTCGG
TGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTCGTTTTTAAGTAAGTACGT
AACTCAACGAGAAATTTCCTTACTTGTGAAATTTCGAATGAATCA
Found at i:10469 original size:13 final size:13
Alignment explanation
Indices: 10451--10477 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10441 GAATTGAATA
10451 TATTATTGAATTT
1 TATTATTGAATTT
10464 TATTATTGAATTT
1 TATTATTGAATTT
10477 T
1 T
10478 TTTTTTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TATTATTGAATTT
Left flanking sequence: Indices 9951 -- 10450
ACTGTATATTACTAGAATGTAATAATAATAAAAGTAATAATAAACAATAAATAATAATAAAATAG
TAATAGAATATTAATACTATAATTATAGAAATACAATTTCTAATATAGAATAGAATTCTATAAAG
TTTAATCCATCATTTAGTTAAATATGCAATTCCCAAAATTTTTTCAATATTCTTTTTTATCATTT
ATCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCATTGTCTAATGGATAGGAC
AGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATATTTTTTCATTCCATT
TTATTCTAATTTCATTCCATATTAATATTTTTTTATTCCATTTTATTCTAATTTTATTCCATATT
ATAATCCATATTATAATATATATATTTTAATTTAGTATGTATATAGTATATATATATTATATATT
TTATATATTATATATTTTTTTATATATTTTTTTTTGAATTGAATA
Right flanking sequence: Indices 10478 -- 10977
TTTTTTTCATTTTATTTATTTATTTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTG
AATGGTTTGAATAAAAGACGTTTATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAA
TTTATTTTTATTTATTTTTTGTTTTATAGTTTATATTTATAATTTGTTTATAATTTGATTTTTAT
AATTTTATTTAAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGT
GATCAATTTCTTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTT
CAAAAGGGCTTCCGCTTCTTCGGTGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTT
TATTCGTTTTTAAGTAAGTACGTAACTCAACGAGAAATTTCCTTACTTGTGAAATTTCGAATGAA
TCAAGATAACCATTCGTTCCAGTATAAATAGTTATTATCTGTTCC
Found at i:10671 original size:25 final size:25
Alignment explanation
Indices: 10611--10677 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
10601 AATTTAATTT
* **
10611 ATTTTTATTTATTTTTTGTTTTATA
1 ATTTATATTTATAATTTGTTTTATA
*
10636 GTTTATATTTATAATTTG-TTTATA
1 ATTTATATTTATAATTTGTTTTATA
*
10660 ATTTGATTTTTATAATTT
1 ATTT-ATATTTATAATTT
10678 TATTTAAGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 9 0.26
25 26 0.74
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (25 bp):
ATTTATATTTATAATTTGTTTTATA
Left flanking sequence: Indices 10111 -- 10610
TCCCAAAATTTTTTCAATATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACAAATTA
GAATTAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTC
AAATCCTATTGGACGCAATATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAATATTT
TTTTATTCCATTTTATTCTAATTTTATTCCATATTATAATCCATATTATAATATATATATTTTAA
TTTAGTATGTATATAGTATATATATATTATATATTTTATATATTATATATTTTTTTATATATTTT
TTTTTGAATTGAATATATTATTGAATTTTATTATTGAATTTTTTTTTTTCATTTTATTTATTTAT
TTTTTAGAATATATTTTTTTGGATTTCTATAAAGATATTTTGAATGGTTTGAATAAAAGACGTTT
ATACTTATTGTATAACTTAGTTATAGCTTCTACTTAATTTAATTT
Right flanking sequence: Indices 10678 -- 11177
TATTTAAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCA
ATTTCTTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAA
GGGCTTCCGCTTCTTCGGTGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTC
GTTTTTAAGTAAGTACGTAACTCAACGAGAAATTTCCTTACTTGTGAAATTTCGAATGAATCAAG
ATAACCATTCGTTCCAGTATAAATAGTTATTATCTGTTCCTCGACTGTGAGAGGGGCTGATTGGG
ATTGTTTGAGCAACTCGCGTAATCGTTGACCTCTTGCCAACTGATTCTGAGTAGCTTTATCGAGA
TCCGAAGCGAATTGGGCAAAGGCTTCTAATTCTGCGAATTGCGCCAATTCCAATTTTAATTTGCC
AGCTACTTGTTTCATAGCTTTAATTTGAGCTGCGGATCCGACTCT
Found at i:10673 original size:14 final size:14
Alignment explanation
Indices: 10629--10682 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
10619 TTATTTTTTG
*
10629 TTTTATAGTTT-AT
1 TTTTATAATTTGAT
*
10642 ATTTATAATTTG--
1 TTTTATAATTTGAT
10654 -TTTATAATTTGAT
1 TTTTATAATTTGAT
*
10667 TTTTATAATTTTAT
1 TTTTATAATTTGAT
10681 TT
1 TT
10683 AAGTATTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
11 11 0.32
13 9 0.26
14 14 0.41
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (14 bp):
TTTTATAATTTGAT
Left flanking sequence: Indices 10129 -- 10628
ATTCTTTTTTATCATTTATCAGCAAGAAAAAAAATAAGAACAAATTAGAATTAAAAAGCGTCCAT
TGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAA
TATTTTTTCATTCCATTTTATTCTAATTTCATTCCATATTAATATTTTTTTATTCCATTTTATTC
TAATTTTATTCCATATTATAATCCATATTATAATATATATATTTTAATTTAGTATGTATATAGTA
TATATATATTATATATTTTATATATTATATATTTTTTTATATATTTTTTTTTGAATTGAATATAT
TATTGAATTTTATTATTGAATTTTTTTTTTTCATTTTATTTATTTATTTTTTAGAATATATTTTT
TTGGATTTCTATAAAGATATTTTGAATGGTTTGAATAAAAGACGTTTATACTTATTGTATAACTT
AGTTATAGCTTCTACTTAATTTAATTTATTTTTATTTATTTTTTG
Right flanking sequence: Indices 10683 -- 11182
AAGTATTTTGACTTAAGTATTATATTTATTATAATCAAGATTAAAGATTAAGAGTGATCAATTTC
TTTATACTTGTTCCTGAAGCCGAAAACGTTCTCTCTGTTCTTGAATAGCTTCTTTCAAAAGGGCT
TCCGCTTCTTCGGTGAATGTTTTGGTAGAAGATATGATTTTTTGGAACTGAGGTTTATTCGTTTT
TAAGTAAGTACGTAACTCAACGAGAAATTTCCTTACTTGTGAAATTTCGAATGAATCAAGATAAC
CATTCGTTCCAGTATAAATAGTTATTATCTGTTCCTCGACTGTGAGAGGGGCTGATTGGGATTGT
TTGAGCAACTCGCGTAATCGTTGACCTCTTGCCAACTGATTCTGAGTAGCTTTATCGAGATCCGA
AGCGAATTGGGCAAAGGCTTCTAATTCTGCGAATTGCGCCAATTCCAATTTTAATTTGCCAGCTA
CTTGTTTCATAGCTTTAATTTGAGCTGCGGATCCGACTCTGGAGA
Found at i:13677 original size:14 final size:14
Alignment explanation
Indices: 13658--13688 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
13648 CATTATTCTT
13658 TTTATTTGTTATTA
1 TTTATTTGTTATTA
13672 TTTATTTGTTATTA
1 TTTATTTGTTATTA
13686 TTT
1 TTT
13689 TTTTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (14 bp):
TTTATTTGTTATTA
Left flanking sequence: Indices 13158 -- 13657
TTCCAACTATTCATTTTAAACCCATTTATTTATGTATTAACATAGTAGTAGAAAGAGTACCTTGC
TGCGTCTGGACTTCAAACAGTTTAGCTTTAGCTTTAACCATACCATGTTAATGGTCCTACCTTAT
TGGTTGATAGAGAATCAAATTTACCAATAAATCACGAAATGCTATGGTTCTTAAAGATGATTTTT
TAATTTATTTAGAAGTAATTCGCGGGATCATGCACCTTTTTTTCTTTACTAGTTGCTAGGTAAAA
CGAAAAAAAGTACAACTGGTTCAATCCAACCTATTCGTGAAATAAACAACTCGCACACACTCCCT
TTCCAAAAAAAATCAATACACCAAGGACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCG
GTATTAAGTCCGAAACTCCCAGCAGACGGCCAGTGACCCAAAGAAACGAAAGAATCGGTTACATT
TTTCATAGGATCTCCTCTTCTCTTATAGACAGAGTCATTATTCTT
Right flanking sequence: Indices 13689 -- 14188
TTTTTTTTTATTGGAAATTTATAATAAAAGAAAGACTTTTTGATTGGAATTCGGTACCAGGTCTT
GTGTAAATTATGAAATATATCCTTTGCTTTTGTTGCAACACTTCCTTAAAAAACTTAAAAAAGTT
TCGATTGAACTAAGAGGGTGGAAGGAAGAAAGCGAGTCGGTATACTAATTCCTCATCCTCAGATC
AATCCTTCCCGTGGGTTATTGTCCCAATAGAATCCCAATATAATAAAAAATAATACAATAAAAAA
TACAATAAAAAAAAAAATGATAGGAGTCAAATCTTGATATAATTTGAAAAAGAAAGCAGCAAATC
CAAGGTAATAAAAAAATATGTATTTTTTTTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCT
AATGCTACAACCAGGCCATAAATTGTTAAAGCTTCCATAAAAGCCAGACTAAGCAATAAAGTACC
TCGTATTTTTCCCTCCGCCTCGGGTTGTCTCGCGATACCTTCTAC
Found at i:13943 original size:15 final size:15
Alignment explanation
Indices: 13920--13950 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13910 ATAGAATCCC
*
13920 AATATAATAAAAAAT
1 AATACAATAAAAAAT
13935 AATACAATAAAAAAT
1 AATACAATAAAAAAT
13950 A
1 A
13951 CAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
AATACAATAAAAAAT
Left flanking sequence: Indices 13420 -- 13919
AAAAAAAGTACAACTGGTTCAATCCAACCTATTCGTGAAATAAACAACTCGCACACACTCCCTTT
CCAAAAAAAATCAATACACCAAGGACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCGGT
ATTAAGTCCGAAACTCCCAGCAGACGGCCAGTGACCCAAAGAAACGAAAGAATCGGTTACATTTT
TCATAGGATCTCCTCTTCTCTTATAGACAGAGTCATTATTCTTTTTATTTGTTATTATTTATTTG
TTATTATTTTTTTTTTTTATTGGAAATTTATAATAAAAGAAAGACTTTTTGATTGGAATTCGGTA
CCAGGTCTTGTGTAAATTATGAAATATATCCTTTGCTTTTGTTGCAACACTTCCTTAAAAAACTT
AAAAAAGTTTCGATTGAACTAAGAGGGTGGAAGGAAGAAAGCGAGTCGGTATACTAATTCCTCAT
CCTCAGATCAATCCTTCCCGTGGGTTATTGTCCCAATAGAATCCC
Right flanking sequence: Indices 13951 -- 14450
CAATAAAAAAAAAAATGATAGGAGTCAAATCTTGATATAATTTGAAAAAGAAAGCAGCAAATCCA
AGGTAATAAAAAAATATGTATTTTTTTTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAA
TGCTACAACCAGGCCATAAATTGTTAAAGCTTCCATAAAAGCCAGACTAAGCAATAAAGTACCTC
GTATTTTTCCCTCCGCCTCGGGTTGTCTCGCGATACCTTCTACAGCTTGGCCCGCGGCAGTACCT
TGACCAACCCCAGGTCCAATAGAAGCAAGCCCAACGGCTAACCCAGCAGCAATAACGGAAGCGGC
AGAAATCAATGGATTCATGATAAGTTCCTCGCACCAAAATAAAATAAAGAAATGGTTAATGATAC
AATCAACCAATAAATTATGATTTAATTATTCTATTCCATTGATAAGATTTTCAATCAGTCGAAGC
AAAATAATTAAGAACGCCGAATTAAAATAATAGTATTAGTGAATC
Found at i:13950 original size:12 final size:12
Alignment explanation
Indices: 13930--13960 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
13920 AATATAATAA
13930 AAAATAATACAAT
1 AAAA-AATACAAT
13943 AAAAAATACAAT
1 AAAAAATACAAT
13955 AAAAAA
1 AAAAAA
13961 AAAAATGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAATACAAT
Left flanking sequence: Indices 13430 -- 13929
CAACTGGTTCAATCCAACCTATTCGTGAAATAAACAACTCGCACACACTCCCTTTCCAAAAAAAA
TCAATACACCAAGGACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCGGTATTAAGTCCG
AAACTCCCAGCAGACGGCCAGTGACCCAAAGAAACGAAAGAATCGGTTACATTTTTCATAGGATC
TCCTCTTCTCTTATAGACAGAGTCATTATTCTTTTTATTTGTTATTATTTATTTGTTATTATTTT
TTTTTTTTATTGGAAATTTATAATAAAAGAAAGACTTTTTGATTGGAATTCGGTACCAGGTCTTG
TGTAAATTATGAAATATATCCTTTGCTTTTGTTGCAACACTTCCTTAAAAAACTTAAAAAAGTTT
CGATTGAACTAAGAGGGTGGAAGGAAGAAAGCGAGTCGGTATACTAATTCCTCATCCTCAGATCA
ATCCTTCCCGTGGGTTATTGTCCCAATAGAATCCCAATATAATAA
Right flanking sequence: Indices 13961 -- 14460
AAAAATGATAGGAGTCAAATCTTGATATAATTTGAAAAAGAAAGCAGCAAATCCAAGGTAATAAA
AAAATATGTATTTTTTTTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAATGCTACAACC
AGGCCATAAATTGTTAAAGCTTCCATAAAAGCCAGACTAAGCAATAAAGTACCTCGTATTTTTCC
CTCCGCCTCGGGTTGTCTCGCGATACCTTCTACAGCTTGGCCCGCGGCAGTACCTTGACCAACCC
CAGGTCCAATAGAAGCAAGCCCAACGGCTAACCCAGCAGCAATAACGGAAGCGGCAGAAATCAAT
GGATTCATGATAAGTTCCTCGCACCAAAATAAAATAAAGAAATGGTTAATGATACAATCAACCAA
TAAATTATGATTTAATTATTCTATTCCATTGATAAGATTTTCAATCAGTCGAAGCAAAATAATTA
AGAACGCCGAATTAAAATAATAGTATTAGTGAATCATCAAAATTA
Found at i:15087 original size:13 final size:13
Alignment explanation
Indices: 15071--15096 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15061 TATTAATATT
15071 TTCTTTTGTTTTG
1 TTCTTTTGTTTTG
15084 TTCTTTTGTTTTG
1 TTCTTTTGTTTTG
15097 GTCAATCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.15, T:0.77
Consensus pattern (13 bp):
TTCTTTTGTTTTG
Left flanking sequence: Indices 14571 -- 15070
CATTTTTTTATTCAATATTCAATTCACAGTTACAAACGAGAAGAAGAAGAAAGGACTCTTATTTT
ATTGGAATTCCTATCTAAATTCCCATTACCATTAGTAGTAGGGCGGATTAAATTATATCTTTTAG
CTCATATATAACTAGTTAATACCTAATATTACATATACATGTCTTTCTGCCATAACGTAAACCAA
CTGTTCGTATCTTAAATGCAATCAGATTCAAAAATTCAAATTATTTTTTGAAACATCCACAAAGT
AAAGTAGGCTTATATCCATTATATATATATTCTATACACCTAGTTTGATCCCACTCTCCTGAATA
ACCCCCCTTTTTTTCTGAATCTCATTTTTTATAAACTATTCTCTTCCTTTTATTTATCGTTTTCC
CACACGGATCCAATCAATCTAAATGGACAAATTCATTAGTCTGAATCATTGCATAGAAATATAAG
TCTTTGGTTGATCTAAGTTCATGTAATTTATTATTTATTAATATT
Right flanking sequence: Indices 15097 -- 15596
GTCAATCGTTGAATTGAATAAAAAAAACGACTGAAATTAGAAATTAAATGGGCATTACTCTATAA
AACCTTTTTTAATCACACATCATAAAAAATTAAAAAATAAAGAATTCCTAGGTAAATTATGGTTA
CTAAGATTGGAATTGAATGAACGAAACAATCAACAATGACAATATAAAGAAAATTTTCATTGGAA
GTAGGTATAAAAGGACCAAACGAATTTTAGGAAAAAGATCTTTTAGATCTCTTTCCCTTTTTTTT
TTTTACAATTCGCCAATATCGTAAGCTGTTTTACTATTCCTCTAGATTGTATAGACTTTTTTGTC
TATTTGTGTATATTTTTGTTTACTAAGTAGATTCTCTTGAGCAAGGCCGGGATTCTAAGCTTAAG
CTAAAAAAAACTATTTCGAAAATTAGTCAATGATGCCCCTCCATGGATTCGCCTATATAAGCCGC
AGCTAAAGTTGCAAAAATAAGAGCTTGAATCCCGCTTGTAAATAA
Found at i:17360 original size:21 final size:21
Alignment explanation
Indices: 17317--17362 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
17307 AATCCAAGCG
*
17317 ATTAATTTCTTTCTATTCCTT
1 ATTAATTTCTTTATATTCCTT
*
17338 ATTAATTATCTTTAT-TTCTTT
1 ATTAATT-TCTTTATATTCCTT
17359 ATTA
1 ATTA
17363 TTTTGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTAATTTCTTTATATTCCTT
Left flanking sequence: Indices 16817 -- 17316
CTGAACTTTTGAAGTCTCATTTCCGTAGTGGACCAATTCGTTAAAATACCGCCGAGCCATTTTTT
ATTAACGTAATGACACCGAGATCTTATCGCAGCCCGCATTACTAAATCAGCTGCTTTTTTTTTGG
TACCAACAATTAAGAATTGCTTTGTCCTACTTGCTGCATCAAAAACTAAATCACAAGCTTCTGAT
AAAAAACGAGCAGTTCTAGTAAGATTTGTAATATGAATACCTTTACGCTTTGCAGAAATATAAGG
TCCCATTCTCGGATTCCATTTTCTAGTACCATGACCAAAATGAACTCCTGCTTCCAGCATCTCTT
CCAAATTAATGTTCCAATATCTTCTTATCATTTCTCCACACACTTCCTCTCTCTTTTTCTTTTTC
TCTTTTTTCAATGAAAAAAAAAAGAGAGACAAGGTACCCTGAAATAAATAATTGTTCCGATGGAA
CCTTCTCTTTTCCCGGAAATTGGACGTTAATACATAATCCAAGCG
Right flanking sequence: Indices 17363 -- 17862
TTTTGATTAGTCTTTATTACTATTAACTATTAACAAATCTAACAAATCACGTGTAAAAAAAAAAA
TCACAGGACCACCGATAGTTAGATAGTTAAAAGAATAAATCCGCTTTTAGGAATCATTAAATCCT
AGAAATGATTGTTTTGATGTATCATAGAAATTTTTTGAACTGCAAGAATCAAATAATTCTTTGTG
GTGGAACAAAATATCTCTCATTTTCTCCTTGAATAAACTCTTCTTTTTGGTTTTCATTTTCAAAG
GAATGTTCTTATGTTGCCTTGAGCAGTACATGAATCCTTTGAATCCGGTCCCAACGGGTATCATA
CCACCTAGAACAACGTTTTCTTTCAGGCCTTTCAACCAATCAATACGACCGCGGAGAGCCGCTTT
TGCTAAAACGCGAGCAGTTTCTTGAAAACTCGCCTCCGATATGAAACTTTGAGTATTCAGAGAAG
CTCTCGTTATTCCTAATAATATGACTCGGTAACAGATCGCTTCTT
Found at i:28443 original size:15 final size:15
Alignment explanation
Indices: 28423--28452 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
28413 AGACTTCGTA
28423 TCATATAAATCATAT
1 TCATATAAATCATAT
28438 TCATATAAATCATAT
1 TCATATAAATCATAT
28453 AATATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
TCATATAAATCATAT
Left flanking sequence: Indices 27923 -- 28422
CCCATTATTGGATCGTTCTTCATCCAATTATATGGATCAATCTAGCAATGATGGAATTTTTTTAT
ATTCTGTTTACAGAATCACATAAAATTTTATCTAACTCTATATATGGAATGTGTAAAATACGTAT
GAACGGAGGAATAAAGAAAATTTTATACTCAAATTGGAATTTGCAGCAGATATAACTGGAAAGGA
ATTGAGAAATTCCACTTAACTTCGCTTCGACTTATGGAGTTTTGTATAGAATAGCAAAACAAAAA
GTGATTCAATTTATAATACCATTATTATGATATTCAATATTTCAATATAATTGAATATCAGTAAA
CTAAAAGGATTCGGGATTTTATCTGTTTGATGAGATAAAGACCCAATAATCAGAAACAATATTAA
AGTGGATTTTTTTAGCACTTAGTCTTTTTCGTGGATTTCATTTCATTGTTCAGTTCAAAAAAAAA
GGTTCGTGAGATATATTTTTCTCTATTTTTTTAATAGACTTCGTA
Right flanking sequence: Indices 28453 -- 28952
AATATAATAAAATATAATAATATGTTTGAATAATATGTTTGAATAATATGTTTGAAGTGCATAAA
AAGGTCTCTGAACTATACGCAAATATAACTATAGCTATTTATATATACATCTCTCCTTTTATTTC
AGTTCTATTCTGGACAGTACATGCTGTGCTCTATCAAAATTTCTATATTTTTTATTCAATTTTGA
ATTGAATAGAAAATTTTCTATAGGAATTATAGACAGATAAGATATCCGATTAGATATCTGTATAA
GAATTTCTATTCTGGGATTTACATATACTCATAATTATTGTTATAATTAACATTGAGAAGGATTC
TTTTTTATTGAAAAGAATCAATATTGATTAGTTATGTTTCAATTTTGATTTTCTTATATCATTAG
GGAAAAAAGGGAAAAACAATTTTCGATTCAAATCCAAGATTTTTTCACGCATTCCCAGTCAATAG
TTAAAGGTTCCAATTTGTCCAGAATTTTGTCTTTTGTGACTGAAA
Found at i:28484 original size:13 final size:13
Alignment explanation
Indices: 28468--28508 Score: 82
Period size: 13 Copynumber: 3.2 Consensus size: 13
28458 AATAAAATAT
28468 AATAATATGTTTG
1 AATAATATGTTTG
28481 AATAATATGTTTG
1 AATAATATGTTTG
28494 AATAATATGTTTG
1 AATAATATGTTTG
28507 AA
1 AA
28509 GTGCATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (13 bp):
AATAATATGTTTG
Left flanking sequence: Indices 27968 -- 28467
CAATGATGGAATTTTTTTATATTCTGTTTACAGAATCACATAAAATTTTATCTAACTCTATATAT
GGAATGTGTAAAATACGTATGAACGGAGGAATAAAGAAAATTTTATACTCAAATTGGAATTTGCA
GCAGATATAACTGGAAAGGAATTGAGAAATTCCACTTAACTTCGCTTCGACTTATGGAGTTTTGT
ATAGAATAGCAAAACAAAAAGTGATTCAATTTATAATACCATTATTATGATATTCAATATTTCAA
TATAATTGAATATCAGTAAACTAAAAGGATTCGGGATTTTATCTGTTTGATGAGATAAAGACCCA
ATAATCAGAAACAATATTAAAGTGGATTTTTTTAGCACTTAGTCTTTTTCGTGGATTTCATTTCA
TTGTTCAGTTCAAAAAAAAAGGTTCGTGAGATATATTTTTCTCTATTTTTTTAATAGACTTCGTA
TCATATAAATCATATTCATATAAATCATATAATATAATAAAATAT
Right flanking sequence: Indices 28509 -- 29008
GTGCATAAAAAGGTCTCTGAACTATACGCAAATATAACTATAGCTATTTATATATACATCTCTCC
TTTTATTTCAGTTCTATTCTGGACAGTACATGCTGTGCTCTATCAAAATTTCTATATTTTTTATT
CAATTTTGAATTGAATAGAAAATTTTCTATAGGAATTATAGACAGATAAGATATCCGATTAGATA
TCTGTATAAGAATTTCTATTCTGGGATTTACATATACTCATAATTATTGTTATAATTAACATTGA
GAAGGATTCTTTTTTATTGAAAAGAATCAATATTGATTAGTTATGTTTCAATTTTGATTTTCTTA
TATCATTAGGGAAAAAAGGGAAAAACAATTTTCGATTCAAATCCAAGATTTTTTCACGCATTCCC
AGTCAATAGTTAAAGGTTCCAATTTGTCCAGAATTTTGTCTTTTGTGACTGAAAATTGACATTTG
GTTTTTCATTTCAATAGAAAGTGGGAAAATTTGGATAATGTATGT
Found at i:29720 original size:18 final size:18
Alignment explanation
Indices: 29699--29734 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
29689 CCTTTTTTTT
29699 TTATATAAAATTATATAA
1 TTATATAAAATTATATAA
29717 TTATATAAAATTATATAA
1 TTATATAAAATTATATAA
29735 AAAAAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TTATATAAAATTATATAA
Left flanking sequence: Indices 29199 -- 29698
TAAGGCGGGGGACTGCAAATCCTTTTTCCCCAGTTCAAATCCGGGTGTCGCCTGATCAACAAAAC
AAAAGACGCGAAATATTTTATTGCCGCTTTGCTGATATAACTTGTTGAATTTGCTCCCAACAGAA
ACACGTGGGGTAAAAGTACTCTTGATATTTCCTTGATTCTAAACATTTAAAAGTTCTGTTCTCTA
AAGTGTTGTAAATTCTTGGCTCTAGGATTCAAGGAAAATTTATAGTAGTGAAAGGGAATCGGTAA
ATCTTGATAGAATAGACCTTCTACTATTAATGTAATGCCTACTGACTGGGTCTTGAATTAAATTG
GATAGCGGAGCAAAGAATCAAATTAGTACTCGTCGAAAAGGCGGAAGTTACTTTGTATACAAACT
TAGAAAAGTTCCTGAGTACTCAGGAATTCAATCAATCGAATAGCGATTGAATGGATAATTGGCTT
TTATCCACATATCCATTTTTTACATATATATATTTCCTTTTTTTT
Right flanking sequence: Indices 29735 -- 30234
AAAAAAAGTAATTTTGATATTTTTATTTTTCTTATTTTTCTATTTTTATATATTTTTATATAAAT
TTTATATTTTTATATAAAGTAGAAATAATATATATAGCAAATAAATAAAATAGATCAAATGGAAA
AAGGATATTAAAAAAAAAAAATAGGGATATGTAATAGATAGTGATCTATCTTGATTCTATATTTT
TCGATTTTTTGACTTAATGAAGTGCAACAAAAGAAAGAATAGGTCTTATTATTCTTACATCTTAG
TAACATTTTCTTGACACTTCCGGGAGTGCCGTTGCGTATTTTATTTGTACTTAATGTTTTTCGAT
TCTACTAGCAATCATATAAGAACTTCTTATAATTAATAATTAATTGTATTTTTTGTATTGTTTCA
TCAATGGTATTGGACAGAATCCTTTTTTTTTGACTCCGCGCTAGCGGTTTATTATTAGTGAACAA
TAATTATTAATGAACAATACTGGAAAAATTCTTTCATATTCATAG
Found at i:29738 original size:12 final size:10
Alignment explanation
Indices: 29699--29736 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
29689 CCTTTTTTTT
29699 TTATATAAAA
1 TTATATAAAA
29709 TTATAT--AA
1 TTATATAAAA
29717 TTATATAAAA
1 TTATATAAAA
29727 TTATATAAAA
1 TTATATAAAA
29737 AAAAAGTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.31
10 18 0.69
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TTATATAAAA
Left flanking sequence: Indices 29199 -- 29698
TAAGGCGGGGGACTGCAAATCCTTTTTCCCCAGTTCAAATCCGGGTGTCGCCTGATCAACAAAAC
AAAAGACGCGAAATATTTTATTGCCGCTTTGCTGATATAACTTGTTGAATTTGCTCCCAACAGAA
ACACGTGGGGTAAAAGTACTCTTGATATTTCCTTGATTCTAAACATTTAAAAGTTCTGTTCTCTA
AAGTGTTGTAAATTCTTGGCTCTAGGATTCAAGGAAAATTTATAGTAGTGAAAGGGAATCGGTAA
ATCTTGATAGAATAGACCTTCTACTATTAATGTAATGCCTACTGACTGGGTCTTGAATTAAATTG
GATAGCGGAGCAAAGAATCAAATTAGTACTCGTCGAAAAGGCGGAAGTTACTTTGTATACAAACT
TAGAAAAGTTCCTGAGTACTCAGGAATTCAATCAATCGAATAGCGATTGAATGGATAATTGGCTT
TTATCCACATATCCATTTTTTACATATATATATTTCCTTTTTTTT
Right flanking sequence: Indices 29737 -- 30236
AAAAAGTAATTTTGATATTTTTATTTTTCTTATTTTTCTATTTTTATATATTTTTATATAAATTT
TATATTTTTATATAAAGTAGAAATAATATATATAGCAAATAAATAAAATAGATCAAATGGAAAAA
GGATATTAAAAAAAAAAAATAGGGATATGTAATAGATAGTGATCTATCTTGATTCTATATTTTTC
GATTTTTTGACTTAATGAAGTGCAACAAAAGAAAGAATAGGTCTTATTATTCTTACATCTTAGTA
ACATTTTCTTGACACTTCCGGGAGTGCCGTTGCGTATTTTATTTGTACTTAATGTTTTTCGATTC
TACTAGCAATCATATAAGAACTTCTTATAATTAATAATTAATTGTATTTTTTGTATTGTTTCATC
AATGGTATTGGACAGAATCCTTTTTTTTTGACTCCGCGCTAGCGGTTTATTATTAGTGAACAATA
ATTATTAATGAACAATACTGGAAAAATTCTTTCATATTCATAGAA
Found at i:29780 original size:17 final size:17
Alignment explanation
Indices: 29754--29791 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
29744 AATTTTGATA
*
29754 TTTTTATTTTTCT-TAT
1 TTTTTATTTTTATATAT
29770 TTTTCTATTTTTATATAT
1 TTTT-TATTTTTATATAT
29788 TTTT
1 TTTT
29792 ATATAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 8 0.42
18 7 0.37
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTTATATAT
Left flanking sequence: Indices 29254 -- 29753
TCAACAAAACAAAAGACGCGAAATATTTTATTGCCGCTTTGCTGATATAACTTGTTGAATTTGCT
CCCAACAGAAACACGTGGGGTAAAAGTACTCTTGATATTTCCTTGATTCTAAACATTTAAAAGTT
CTGTTCTCTAAAGTGTTGTAAATTCTTGGCTCTAGGATTCAAGGAAAATTTATAGTAGTGAAAGG
GAATCGGTAAATCTTGATAGAATAGACCTTCTACTATTAATGTAATGCCTACTGACTGGGTCTTG
AATTAAATTGGATAGCGGAGCAAAGAATCAAATTAGTACTCGTCGAAAAGGCGGAAGTTACTTTG
TATACAAACTTAGAAAAGTTCCTGAGTACTCAGGAATTCAATCAATCGAATAGCGATTGAATGGA
TAATTGGCTTTTATCCACATATCCATTTTTTACATATATATATTTCCTTTTTTTTTTATATAAAA
TTATATAATTATATAAAATTATATAAAAAAAAAGTAATTTTGATA
Right flanking sequence: Indices 29792 -- 30291
ATATAAATTTTATATTTTTATATAAAGTAGAAATAATATATATAGCAAATAAATAAAATAGATCA
AATGGAAAAAGGATATTAAAAAAAAAAAATAGGGATATGTAATAGATAGTGATCTATCTTGATTC
TATATTTTTCGATTTTTTGACTTAATGAAGTGCAACAAAAGAAAGAATAGGTCTTATTATTCTTA
CATCTTAGTAACATTTTCTTGACACTTCCGGGAGTGCCGTTGCGTATTTTATTTGTACTTAATGT
TTTTCGATTCTACTAGCAATCATATAAGAACTTCTTATAATTAATAATTAATTGTATTTTTTGTA
TTGTTTCATCAATGGTATTGGACAGAATCCTTTTTTTTTGACTCCGCGCTAGCGGTTTATTATTA
GTGAACAATAATTATTAATGAACAATACTGGAAAAATTCTTTCATATTCATAGAAATAGGGGACA
TAATTCACATGGATATAGTAAGTCTCGCTTGGGCTGCTTTAATGG
Found at i:29788 original size:10 final size:10
Alignment explanation
Indices: 29775--29815 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
29765 CTTATTTTTC
29775 TATTTTTATA
1 TATTTTTATA
29785 TATTTTTATA
1 TATTTTTATA
**
29795 TAAATTT-TA
1 TATTTTTATA
29804 TATTTTTATA
1 TATTTTTATA
29814 TA
1 TA
29816 AAGTAGAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
TATTTTTATA
Left flanking sequence: Indices 29275 -- 29774
AATATTTTATTGCCGCTTTGCTGATATAACTTGTTGAATTTGCTCCCAACAGAAACACGTGGGGT
AAAAGTACTCTTGATATTTCCTTGATTCTAAACATTTAAAAGTTCTGTTCTCTAAAGTGTTGTAA
ATTCTTGGCTCTAGGATTCAAGGAAAATTTATAGTAGTGAAAGGGAATCGGTAAATCTTGATAGA
ATAGACCTTCTACTATTAATGTAATGCCTACTGACTGGGTCTTGAATTAAATTGGATAGCGGAGC
AAAGAATCAAATTAGTACTCGTCGAAAAGGCGGAAGTTACTTTGTATACAAACTTAGAAAAGTTC
CTGAGTACTCAGGAATTCAATCAATCGAATAGCGATTGAATGGATAATTGGCTTTTATCCACATA
TCCATTTTTTACATATATATATTTCCTTTTTTTTTTATATAAAATTATATAATTATATAAAATTA
TATAAAAAAAAAGTAATTTTGATATTTTTATTTTTCTTATTTTTC
Right flanking sequence: Indices 29816 -- 30315
AAGTAGAAATAATATATATAGCAAATAAATAAAATAGATCAAATGGAAAAAGGATATTAAAAAAA
AAAAATAGGGATATGTAATAGATAGTGATCTATCTTGATTCTATATTTTTCGATTTTTTGACTTA
ATGAAGTGCAACAAAAGAAAGAATAGGTCTTATTATTCTTACATCTTAGTAACATTTTCTTGACA
CTTCCGGGAGTGCCGTTGCGTATTTTATTTGTACTTAATGTTTTTCGATTCTACTAGCAATCATA
TAAGAACTTCTTATAATTAATAATTAATTGTATTTTTTGTATTGTTTCATCAATGGTATTGGACA
GAATCCTTTTTTTTTGACTCCGCGCTAGCGGTTTATTATTAGTGAACAATAATTATTAATGAACA
ATACTGGAAAAATTCTTTCATATTCATAGAAATAGGGGACATAATTCACATGGATATAGTAAGTC
TCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCCCTTTCAC
Found at i:29794 original size:8 final size:8
Alignment explanation
Indices: 29745--29814 Score: 54
Period size: 8 Copynumber: 8.2 Consensus size: 8
29735 AAAAAAAGTA
*
29745 ATTTTGAT
1 ATTTTTAT
29753 ATTTTTAT
1 ATTTTTAT
29761 -TTTTCT-T
1 ATTTT-TAT
*
29768 ATTTTTCT
1 ATTTTTAT
29776 ATTTTTATAT
1 A-TTTT-TAT
29786 ATTTTTAT
1 ATTTTTAT
29794 ATAAATTTTAT
1 AT---TTTTAT
29805 ATTTTTAT
1 ATTTTTAT
29813 AT
1 AT
29815 AAAGTAGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
7 6 0.12
8 27 0.52
9 8 0.15
10 3 0.06
11 8 0.15
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (8 bp):
ATTTTTAT
Left flanking sequence: Indices 29245 -- 29744
GTCGCCTGATCAACAAAACAAAAGACGCGAAATATTTTATTGCCGCTTTGCTGATATAACTTGTT
GAATTTGCTCCCAACAGAAACACGTGGGGTAAAAGTACTCTTGATATTTCCTTGATTCTAAACAT
TTAAAAGTTCTGTTCTCTAAAGTGTTGTAAATTCTTGGCTCTAGGATTCAAGGAAAATTTATAGT
AGTGAAAGGGAATCGGTAAATCTTGATAGAATAGACCTTCTACTATTAATGTAATGCCTACTGAC
TGGGTCTTGAATTAAATTGGATAGCGGAGCAAAGAATCAAATTAGTACTCGTCGAAAAGGCGGAA
GTTACTTTGTATACAAACTTAGAAAAGTTCCTGAGTACTCAGGAATTCAATCAATCGAATAGCGA
TTGAATGGATAATTGGCTTTTATCCACATATCCATTTTTTACATATATATATTTCCTTTTTTTTT
TATATAAAATTATATAATTATATAAAATTATATAAAAAAAAAGTA
Right flanking sequence: Indices 29815 -- 30314
AAAGTAGAAATAATATATATAGCAAATAAATAAAATAGATCAAATGGAAAAAGGATATTAAAAAA
AAAAAATAGGGATATGTAATAGATAGTGATCTATCTTGATTCTATATTTTTCGATTTTTTGACTT
AATGAAGTGCAACAAAAGAAAGAATAGGTCTTATTATTCTTACATCTTAGTAACATTTTCTTGAC
ACTTCCGGGAGTGCCGTTGCGTATTTTATTTGTACTTAATGTTTTTCGATTCTACTAGCAATCAT
ATAAGAACTTCTTATAATTAATAATTAATTGTATTTTTTGTATTGTTTCATCAATGGTATTGGAC
AGAATCCTTTTTTTTTGACTCCGCGCTAGCGGTTTATTATTAGTGAACAATAATTATTAATGAAC
AATACTGGAAAAATTCTTTCATATTCATAGAAATAGGGGACATAATTCACATGGATATAGTAAGT
CTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCCCTTTCA
Found at i:30197 original size:17 final size:17
Alignment explanation
Indices: 30175--30208 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
30165 CTAGCGGTTT
*
30175 ATTATTAGTGAACAATA
1 ATTATTAATGAACAATA
30192 ATTATTAATGAACAATA
1 ATTATTAATGAACAATA
30209 CTGGAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (17 bp):
ATTATTAATGAACAATA
Left flanking sequence: Indices 29675 -- 30174
ACATATATATATTTCCTTTTTTTTTTATATAAAATTATATAATTATATAAAATTATATAAAAAAA
AAGTAATTTTGATATTTTTATTTTTCTTATTTTTCTATTTTTATATATTTTTATATAAATTTTAT
ATTTTTATATAAAGTAGAAATAATATATATAGCAAATAAATAAAATAGATCAAATGGAAAAAGGA
TATTAAAAAAAAAAAATAGGGATATGTAATAGATAGTGATCTATCTTGATTCTATATTTTTCGAT
TTTTTGACTTAATGAAGTGCAACAAAAGAAAGAATAGGTCTTATTATTCTTACATCTTAGTAACA
TTTTCTTGACACTTCCGGGAGTGCCGTTGCGTATTTTATTTGTACTTAATGTTTTTCGATTCTAC
TAGCAATCATATAAGAACTTCTTATAATTAATAATTAATTGTATTTTTTGTATTGTTTCATCAAT
GGTATTGGACAGAATCCTTTTTTTTTGACTCCGCGCTAGCGGTTT
Right flanking sequence: Indices 30209 -- 30708
CTGGAAAAATTCTTTCATATTCATAGAAATAGGGGACATAATTCACATGGATATAGTAAGTCTCG
CTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGCAGAAGTGGT
CTCTAAGGGTACTAGTAATTGAGTTAAAAAATGAAACCAATTCTTTTCTAGATCGTTTTGTTTTG
CAAAGACTTTTTGATTTAACTATTTAAATTGAATTGAATTCAATTATTTAATTCAATTCAATTTC
TATTGGATTCGCATGGAGTAATCTATTCTATGAATAATACCCTTTTAATCATAATCAACTCAAAC
AAATATTTCAATGATTCCCGTGCTCATATTTCTAAAGTGATCATATTTCGAAAGTAAAAGGAATA
TAAATGATAGGAAATTGAATTCAACCGAATTCTTCCTAAATTTTTTAGTTCGATAAACAGGCTCT
TACCAGAATTATATATAGATAATGAGGAAAAGTGTAATCCTTTTT
Found at i:31531 original size:21 final size:21
Alignment explanation
Indices: 31507--31546 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
31497 TAACTTTCAG
*
31507 ATATACTGGAATAACAAAAAA
1 ATATACTAGAATAACAAAAAA
31528 ATATACTAGAATAACAAAA
1 ATATACTAGAATAACAAAA
31547 TGAGATCCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.20
Consensus pattern (21 bp):
ATATACTAGAATAACAAAAAA
Left flanking sequence: Indices 31007 -- 31506
GGATTTATGCGATACTTCATTCTTCATTGATTTATTTCATATCATGATTCAAAAGTTAAAAATCC
GCGAGGTTTACTAATCCTTTTCGCTGAAATTTGAAAAAGTTTTTATAGAACTCATTTATTTGGAT
GACCTGTTAATTGCTCAATCGATTACTTTTTTTAGAGTGTTAAAAAAAGATTTCTCGATTTTATT
TTATTAATATATGTCCAGATTATTATTATTTTTCCCTTTCAGTGATTTTATTCTTTCGGCAGATG
TCATGTCGGGATTCATATTGAAAATAATCAGAAATATAACAATTAGAATCGTAAGAGTAAGGATG
GGTTTTCGATTATTTCAGATTAATTGGAATCAACACAAAACAAATCAAATTAAATAGATGCAAAA
AGAAATCGAATTGGGATTACATATAGATAATTGATATCTAGATAGATGAATATGAAGATGACATT
CTAGATTGATCGATATTAAACCTATATCTTTATTATAACTTTCAG
Right flanking sequence: Indices 31547 -- 32046
TGAGATCCGATAGTATGGTAGAAAGAAGGATCTACCATACTATCGGATCTCATAGAATACTACTG
ATTCTAGTTCGCTCTTTTTATCTAAGATGCGAAATTGGAATCCTTTTCATTTTTTTTTCTGCAAT
CATTGATAAGAAGTAAGAAGTCAAGTTTCATTCAAATCAATCACTTTGACTAACAGTTTTTACGT
AAATTATAAGTAAAAAGGCAGTAGGAACTAGAATGAACAATGCAGTAGCAATAAATGCGAGAATA
TTTACTTCCATAATCTCATCCTTTCTCTTTTCTTTACGTCGCAATAACTCGGGATTTAATCCCAT
AGAGATGATAAATCTTTCGCCTATAAATTGGATAAATTCCATGTTGATCATGTCGAATCGGATCA
ATATCATGAATAACAATATCTGAGCTATCAAATCGATTCATCGTCGAAAATTGAATAGTATAACA
TAGAAAGATTGTTTATCCATATCAAATCAAAAAATGGAGTTCTGC
Found at i:32097 original size:12 final size:12
Alignment explanation
Indices: 32082--32107 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32072 CTCTTTACTT
32082 TATTTTGATTTA
1 TATTTTGATTTA
32094 TATTTTGATTTA
1 TATTTTGATTTA
32106 TA
1 TA
32108 CTTTATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (12 bp):
TATTTTGATTTA
Left flanking sequence: Indices 31582 -- 32081
CATACTATCGGATCTCATAGAATACTACTGATTCTAGTTCGCTCTTTTTATCTAAGATGCGAAAT
TGGAATCCTTTTCATTTTTTTTTCTGCAATCATTGATAAGAAGTAAGAAGTCAAGTTTCATTCAA
ATCAATCACTTTGACTAACAGTTTTTACGTAAATTATAAGTAAAAAGGCAGTAGGAACTAGAATG
AACAATGCAGTAGCAATAAATGCGAGAATATTTACTTCCATAATCTCATCCTTTCTCTTTTCTTT
ACGTCGCAATAACTCGGGATTTAATCCCATAGAGATGATAAATCTTTCGCCTATAAATTGGATAA
ATTCCATGTTGATCATGTCGAATCGGATCAATATCATGAATAACAATATCTGAGCTATCAAATCG
ATTCATCGTCGAAAATTGAATAGTATAACATAGAAAGATTGTTTATCCATATCAAATCAAAAAAT
GGAGTTCTGCTCTAATCGATAATTTCTTTTCTTTACTCTTTACTT
Right flanking sequence: Indices 32108 -- 32607
CTTTATTTTTCTTTATTCTTCTTTTCCATTCTTTTCTATTCTATCAAACTATCGCCTTTCTTGTA
CAATCATCTGCCGAAGTATCATCTAACCGCCTTTACACTTACATTGGTTCCAAACAAACCTAACA
AACCCAAACAAATAATGGAAGCCAAACTAAAAAAAGGGGGAGTTAAGTTCTAAACTCTTTTGTTT
TTTAATGATCTAATCTTATTGGCTTATTGGAAGACAAAAAACTGTGATAAAGACAAACTCAGTCT
CAGTACGATATTTCTTGGAATCCTGAATATGGCGGGACTGAAATTCTCCTATTTGTCACCCTTTT
ACAGAAAAGGGGAAGATGGGTTGATGTATTTTTTATTGGATTTGGATCCGTCGGGACTGACGGGG
CTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCAATTGAACTACAATCCCAGGGA
AATGAAATAAAGTGTACAGGATACATATTCTATCGCCTCCTTGAA
Found at i:33279 original size:5 final size:5
Alignment explanation
Indices: 33265--33310 Score: 53
Period size: 5 Copynumber: 9.8 Consensus size: 5
33255 GTAATTTTCG
* *
33265 ATTA- ATTAT ATTAT ATTAT -TTA- ATTAT ATTAT ATAAG ATTAT ATTA
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTA
33311 GAATTATATA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
4 10 0.29
5 25 0.71
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (5 bp):
ATTAT
Left flanking sequence: Indices 32765 -- 33264
ACAGGAAGAGATATATCAGAAATTTTTACTTTTTTCCATATCAGGCATTTCGAGAGAACAAAGGG
GTTCTATCATTTCATGGCGGATCAGTGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACA
TATTGCCAACGAATTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAAT
TCCAGACTTATTATATTAATAATCCATGATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAA
GTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCG
ACCGTCAACACGCTATGCTCATAGTATGAACAGTTTTTTGAAATTGTCAATATAACGAAATCATA
TGACTAGATTCCAAAGATCTTTCCGTCTTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTAT
ATTCGTGATTTAGTCATTATAATCGCCATTATCCAGTAATTTTCG
Right flanking sequence: Indices 33311 -- 33810
GAATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATATAATAGAAATAATAATAGAA
AATAGAAATAGAAAAAATAGAAATAATAATAGAAAATAGAAATAGAATGGAAGAATAGAAAAAAT
AGGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCATTTCTTCCACTTTCATTCA
TTAATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGCTAAACCAGGAAATTAACA
AATGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATTCTCAATTTTTTTTTTTTT
CTAAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGATTCGATGAAATATCTTGGA
TCTATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTTTTTTATTTTTTTTATTAG
GATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATT
Found at i:33292 original size:13 final size:15
Alignment explanation
Indices: 33274--33310 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
33264 GATTAATTAT
*
33274 ATTATATTAT-TTA-
1 ATTATATTATATAAG
33287 ATTATATTATATAAG
1 ATTATATTATATAAG
33302 ATTATATTA
1 ATTATATTA
33311 GAATTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
ATTATATTATATAAG
Left flanking sequence: Indices 32774 -- 33273
GATATATCAGAAATTTTTACTTTTTTCCATATCAGGCATTTCGAGAGAACAAAGGGGTTCTATCA
TTTCATGGCGGATCAGTGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAA
CGAATTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAATTCCAGACTT
ATTATATTAATAATCCATGATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAAGTCGAATCC
CCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCGACCGTCAAC
ACGCTATGCTCATAGTATGAACAGTTTTTTGAAATTGTCAATATAACGAAATCATATGACTAGAT
TCCAAAGATCTTTCCGTCTTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTATATTCGTGAT
TTAGTCATTATAATCGCCATTATCCAGTAATTTTCGATTAATTAT
Right flanking sequence: Indices 33311 -- 33810
GAATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATATAATAGAAATAATAATAGAA
AATAGAAATAGAAAAAATAGAAATAATAATAGAAAATAGAAATAGAATGGAAGAATAGAAAAAAT
AGGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCATTTCTTCCACTTTCATTCA
TTAATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGCTAAACCAGGAAATTAACA
AATGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATTCTCAATTTTTTTTTTTTT
CTAAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGATTCGATGAAATATCTTGGA
TCTATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTTTTTTATTTTTTTTATTAG
GATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATT
Found at i:33379 original size:19 final size:19
Alignment explanation
Indices: 33357--33441 Score: 90
Period size: 19 Copynumber: 4.7 Consensus size: 19
33347 TATAAAATAT
33357 AATAGAAATAATAATAGAA
1 AATAGAAATAATAATAGAA
*
33376 AATAGAAAT-A-GA-A-AA
1 AATAGAAATAATAATAGAA
33391 AATAGAAATAATAATAGAA
1 AATAGAAATAATAATAGAA
* *
33410 AATAGAAAT-AGAATGGAA
1 AATAGAAATAATAATAGAA
*
33428 GAATAGAAAAAATA
1 -AATAGAAATAATA
33442 GGAAGGATCC
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
15 11 0.20
16 2 0.04
17 2 0.04
18 9 0.17
19 28 0.52
20 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18
Consensus pattern (19 bp):
AATAGAAATAATAATAGAA
Left flanking sequence: Indices 32857 -- 33356
AATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCC
CCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAATTCCAGACTTATTATATTAATAATCCAT
GATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAG
AGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCGACCGTCAACACGCTATGCTCATAGTAT
GAACAGTTTTTTGAAATTGTCAATATAACGAAATCATATGACTAGATTCCAAAGATCTTTCCGTC
TTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTATATTCGTGATTTAGTCATTATAATCGCC
ATTATCCAGTAATTTTCGATTAATTATATTATATTATTTAATTATATTATATAAGATTATATTAG
AATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATAT
Right flanking sequence: Indices 33442 -- 33941
GGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCATTTCTTCCACTTTCATTCAT
TAATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGCTAAACCAGGAAATTAACAA
ATGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATTCTCAATTTTTTTTTTTTTC
TAAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGATTCGATGAAATATCTTGGAT
CTATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTTTTTTATTTTTTTTATTAGG
ATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATTCCATTGATATTCATCAAATTG
ATATTTATCAAATTCAATAAACCATTTTTTTTTTACCTATATTTACTAATTTAGCCTATACTCTA
CTCATCAGGTAAATTAAATTTCTCGTTTATGACGAAGCTACTATG
Found at i:33384 original size:6 final size:6
Alignment explanation
Indices: 33357--33422 Score: 61
Period size: 6 Copynumber: 11.2 Consensus size: 6
33347 TATAAAATAT
33357 AATAGA AATA-A TAATAGAA AATAGA AATAG- AA-A-A AATAGA AATA-A
1 AATAGA AATAGA -AATAG-A AATAGA AATAGA AATAGA AATAGA AATAGA
33402 TAATAGAA AATAGA AATAGA A
1 -AATAG-A AATAGA AATAGA A
33423 TGGAAGAATA
Statistics
Matches: 51, Mismatches: 0, Indels: 18
0.74 0.00 0.26
Matches are distributed among these distances:
4 3 0.06
5 5 0.10
6 31 0.61
7 10 0.20
8 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (6 bp):
AATAGA
Left flanking sequence: Indices 32857 -- 33356
AATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCC
CCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAATTCCAGACTTATTATATTAATAATCCAT
GATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAG
AGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCGACCGTCAACACGCTATGCTCATAGTAT
GAACAGTTTTTTGAAATTGTCAATATAACGAAATCATATGACTAGATTCCAAAGATCTTTCCGTC
TTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTATATTCGTGATTTAGTCATTATAATCGCC
ATTATCCAGTAATTTTCGATTAATTATATTATATTATTTAATTATATTATATAAGATTATATTAG
AATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATAT
Right flanking sequence: Indices 33423 -- 33922
TGGAAGAATAGAAAAAATAGGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCAT
TTCTTCCACTTTCATTCATTAATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGC
TAAACCAGGAAATTAACAAATGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATT
CTCAATTTTTTTTTTTTTCTAAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGAT
TCGATGAAATATCTTGGATCTATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTT
TTTTATTTTTTTTATTAGGATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATTCC
ATTGATATTCATCAAATTGATATTTATCAAATTCAATAAACCATTTTTTTTTTACCTATATTTAC
TAATTTAGCCTATACTCTACTCATCAGGTAAATTAAATTTCTCGT
Found at i:33385 original size:13 final size:13
Alignment explanation
Indices: 33357--33436 Score: 62
Period size: 13 Copynumber: 6.2 Consensus size: 13
33347 TATAAAATAT
33357 AATAG-AAATA-A
1 AATAGAAAATAGA
33368 TAATAGAAAATAGA
1 -AATAGAAAATAGA
33382 AATAGAAAAAATAGA
1 AATAG--AAAATAGA
*
33397 AATA-ATAATAGAA
1 AATAGAAAATAG-A
33410 AATAG-AAATAG-
1 AATAGAAAATAGA
*
33421 AATGGAAGAATAGA
1 AATAGAA-AATAGA
33435 AA
1 AA
33437 AAATAGGAAG
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
11 4 0.07
12 12 0.21
13 25 0.45
14 3 0.05
15 12 0.21
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.17
Consensus pattern (13 bp):
AATAGAAAATAGA
Left flanking sequence: Indices 32857 -- 33356
AATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCC
CCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAATTCCAGACTTATTATATTAATAATCCAT
GATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAG
AGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCGACCGTCAACACGCTATGCTCATAGTAT
GAACAGTTTTTTGAAATTGTCAATATAACGAAATCATATGACTAGATTCCAAAGATCTTTCCGTC
TTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTATATTCGTGATTTAGTCATTATAATCGCC
ATTATCCAGTAATTTTCGATTAATTATATTATATTATTTAATTATATTATATAAGATTATATTAG
AATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATAT
Right flanking sequence: Indices 33437 -- 33936
AAATAGGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCATTTCTTCCACTTTCA
TTCATTAATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGCTAAACCAGGAAATT
AACAAATGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATTCTCAATTTTTTTTT
TTTTCTAAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGATTCGATGAAATATCT
TGGATCTATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTTTTTTATTTTTTTTA
TTAGGATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATTCCATTGATATTCATCA
AATTGATATTTATCAAATTCAATAAACCATTTTTTTTTTACCTATATTTACTAATTTAGCCTATA
CTCTACTCATCAGGTAAATTAAATTTCTCGTTTATGACGAAGCTA
Found at i:33395 original size:34 final size:34
Alignment explanation
Indices: 33357--33422 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
33347 TATAAAATAT
33357 AATAGAAATAATAATAGAAAATAGAAATAGAAAA
1 AATAGAAATAATAATAGAAAATAGAAATAGAAAA
33391 AATAGAAATAATAATAGAAAATAGAAATAGAA
1 AATAGAAATAATAATAGAAAATAGAAATAGAA
33423 TGGAAGAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (34 bp):
AATAGAAATAATAATAGAAAATAGAAATAGAAAA
Left flanking sequence: Indices 32857 -- 33356
AATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCC
CCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAATTCCAGACTTATTATATTAATAATCCAT
GATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAG
AGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCGACCGTCAACACGCTATGCTCATAGTAT
GAACAGTTTTTTGAAATTGTCAATATAACGAAATCATATGACTAGATTCCAAAGATCTTTCCGTC
TTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTATATTCGTGATTTAGTCATTATAATCGCC
ATTATCCAGTAATTTTCGATTAATTATATTATATTATTTAATTATATTATATAAGATTATATTAG
AATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATAT
Right flanking sequence: Indices 33423 -- 33922
TGGAAGAATAGAAAAAATAGGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCAT
TTCTTCCACTTTCATTCATTAATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGC
TAAACCAGGAAATTAACAAATGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATT
CTCAATTTTTTTTTTTTTCTAAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGAT
TCGATGAAATATCTTGGATCTATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTT
TTTTATTTTTTTTATTAGGATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATTCC
ATTGATATTCATCAAATTGATATTTATCAAATTCAATAAACCATTTTTTTTTTACCTATATTTAC
TAATTTAGCCTATACTCTACTCATCAGGTAAATTAAATTTCTCGT
Found at i:33408 original size:12 final size:12
Alignment explanation
Indices: 33343--33410 Score: 69
Period size: 12 Copynumber: 6.1 Consensus size: 12
33333 TATTATTTCT
33343 ATAAT-ATA-AA
1 ATAATAATAGAA
33353 AT-ATAATAGAA
1 ATAATAATAGAA
33364 ATAATAATAGAAA
1 ATAATAATAG-AA
33377 ATAGA-AATAG-A
1 ATA-ATAATAGAA
33388 A-AA-AATAGAA
1 ATAATAATAGAA
33398 ATAATAATAGAA
1 ATAATAATAGAA
33410 A
1 A
33411 ATAGAAATAG
Statistics
Matches: 50, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
9 8 0.16
10 8 0.16
11 8 0.16
12 15 0.30
13 10 0.20
14 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (12 bp):
ATAATAATAGAA
Left flanking sequence: Indices 32843 -- 33342
ATGGCGGATCAGTGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAA
TTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCAGGAAGAATCAATTCCAGACTTATTA
TATTAATAATCCATGATCAACTTCCTTTCATAATACCCTACCCCCAGGGGAAGTCGAATCCCCGC
TGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATCCCGACCGTCAACACGC
TATGCTCATAGTATGAACAGTTTTTTGAAATTGTCAATATAACGAAATCATATGACTAGATTCCA
AAGATCTTTCCGTCTTTCCGGATTCCGTAGAATTTTGAAATTCGTCATTTATATTCGTGATTTAG
TCATTATAATCGCCATTATCCAGTAATTTTCGATTAATTATATTATATTATTTAATTATATTATA
TAAGATTATATTAGAATTATATAAATATAATCCCTTATTATTTCT
Right flanking sequence: Indices 33411 -- 33910
ATAGAAATAGAATGGAAGAATAGAAAAAATAGGAAGGATCCTTTGATCTGCCAGAAAGCCAGAAA
AGTAAATCCCATTTCTTCCACTTTCATTCATTAATTCACTCAGTGTTAAGATAGATAGACATATC
TCTATCTCACGCTAAACCAGGAAATTAACAAATGATAAATATGGAAATCCAGGTAGGGGGATAAG
TATCAACAAATTCTCAATTTTTTTTTTTTTCTAAGAATTTTGTTCAGGGGGACAAATAGAATCTC
TTCATCAGTGATTCGATGAAATATCTTGGATCTATGTTGAATTGGTAAGTACATGTATCAATCAA
ATGCATTTTTTTTTTTATTTTTTTTATTAGGATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAA
ACAATTCATTCCATTGATATTCATCAAATTGATATTTATCAAATTCAATAAACCATTTTTTTTTT
ACCTATATTTACTAATTTAGCCTATACTCTACTCATCAGGTAAAT
Found at i:33831 original size:15 final size:15
Alignment explanation
Indices: 33813--33845 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
33803 AATTCATTCC
33813 ATTGATATTCATCAA
1 ATTGATATTCATCAA
*
33828 ATTGATATTTATCAA
1 ATTGATATTCATCAA
33843 ATT
1 ATT
33846 CAATAAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (15 bp):
ATTGATATTCATCAA
Left flanking sequence: Indices 33313 -- 33812
ATTATATAAATATAATCCCTTATTATTTCTATAATATAAAATATAATAGAAATAATAATAGAAAA
TAGAAATAGAAAAAATAGAAATAATAATAGAAAATAGAAATAGAATGGAAGAATAGAAAAAATAG
GAAGGATCCTTTGATCTGCCAGAAAGCCAGAAAAGTAAATCCCATTTCTTCCACTTTCATTCATT
AATTCACTCAGTGTTAAGATAGATAGACATATCTCTATCTCACGCTAAACCAGGAAATTAACAAA
TGATAAATATGGAAATCCAGGTAGGGGGATAAGTATCAACAAATTCTCAATTTTTTTTTTTTTCT
AAGAATTTTGTTCAGGGGGACAAATAGAATCTCTTCATCAGTGATTCGATGAAATATCTTGGATC
TATGTTGAATTGGTAAGTACATGTATCAATCAAATGCATTTTTTTTTTTATTTTTTTTATTAGGA
TGGGAGTCAATTCAATTGGGTTCGGCCTTGAAAACAATTCATTCC
Right flanking sequence: Indices 33846 -- 34345
CAATAAACCATTTTTTTTTTACCTATATTTACTAATTTAGCCTATACTCTACTCATCAGGTAAAT
TAAATTTCTCGTTTATGACGAAGCTACTATGAATCTACATCTACTCCATATATTTAATTATATTT
AGTATATGTATATTTAGATTTATTAGAATCTATTTCATATATTTAATATATTTCATTTACTATAT
TTACTTTACATTACTATATTTACTTTACATTACTATATTTACTTTACATTACTTTACATAGATTT
GATTTCTAATCACCATAGATATATCCTATCCGCATAATGGCTGATTCAGGAATTGAATCAAAGAG
GCCCTTTTAACTCAGTGGTAGAGTAACGCTATGGTAAGGCGTAAGTCATCGGTTCAAATCCGATA
AGGGGCTTTACCTCTTTTTTCAGTTTTTTGATAAAACTCCAGCGGTAGTATTTCTATTTGCATTT
GCAAGGAGAATAGAAATATTGTTGATATTTGGAATAATTTGTAAT
Found at i:34048 original size:5 final size:5
Alignment explanation
Indices: 34031--34097 Score: 59
Period size: 5 Copynumber: 14.0 Consensus size: 5
34021 ATATATTTCA
* * * * *
34031 TTTAC TATA- TTTAC TTTAC ATTAC TATA- TTTAC TTTAC ATTAC TATA-
1 TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC TTTAC
*
34078 TTTAC TTTAC ATTAC TTTAC
1 TTTAC TTTAC TTTAC TTTAC
34098 ATAGATTTGA
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
4 9 0.19
5 38 0.81
ACGTcount: A:0.30, C:0.16, G:0.00, T:0.54
Consensus pattern (5 bp):
TTTAC
Left flanking sequence: Indices 33531 -- 34030
TAGACATATCTCTATCTCACGCTAAACCAGGAAATTAACAAATGATAAATATGGAAATCCAGGTA
GGGGGATAAGTATCAACAAATTCTCAATTTTTTTTTTTTTCTAAGAATTTTGTTCAGGGGGACAA
ATAGAATCTCTTCATCAGTGATTCGATGAAATATCTTGGATCTATGTTGAATTGGTAAGTACATG
TATCAATCAAATGCATTTTTTTTTTTATTTTTTTTATTAGGATGGGAGTCAATTCAATTGGGTTC
GGCCTTGAAAACAATTCATTCCATTGATATTCATCAAATTGATATTTATCAAATTCAATAAACCA
TTTTTTTTTTACCTATATTTACTAATTTAGCCTATACTCTACTCATCAGGTAAATTAAATTTCTC
GTTTATGACGAAGCTACTATGAATCTACATCTACTCCATATATTTAATTATATTTAGTATATGTA
TATTTAGATTTATTAGAATCTATTTCATATATTTAATATATTTCA
Right flanking sequence: Indices 34098 -- 34597
ATAGATTTGATTTCTAATCACCATAGATATATCCTATCCGCATAATGGCTGATTCAGGAATTGAA
TCAAAGAGGCCCTTTTAACTCAGTGGTAGAGTAACGCTATGGTAAGGCGTAAGTCATCGGTTCAA
ATCCGATAAGGGGCTTTACCTCTTTTTTCAGTTTTTTGATAAAACTCCAGCGGTAGTATTTCTAT
TTGCATTTGCAAGGAGAATAGAAATATTGTTGATATTTGGAATAATTTGTAATAAAAAATTATAC
ATTATAATTAATTATTAAATTTTAAATAATAGAAATTAGAAAAGTATTTTATTATAAAGTATTTT
ATTATAATAAATAATAATAATATAATAAATTAATGATAAGTTGACTCTTAAATCTCCAAATTTTT
CTATTTTACATTATTCTAATCTAATTAATTATAAAGATTAAATTTTAAATTAATAAAAGAAAAGT
AAGTGGACCTAACCCATTGAATCATTACTATATCCACTATTATGA
Found at i:34056 original size:19 final size:19
Alignment explanation
Indices: 34032--34093 Score: 124
Period size: 19 Copynumber: 3.3 Consensus size: 19
34022 TATATTTCAT
34032 TTACTATATTTACTTTACA
1 TTACTATATTTACTTTACA
34051 TTACTATATTTACTTTACA
1 TTACTATATTTACTTTACA
34070 TTACTATATTTACTTTACA
1 TTACTATATTTACTTTACA
34089 TTACT
1 TTACT
34094 TTACATAGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (19 bp):
TTACTATATTTACTTTACA
Left flanking sequence: Indices 33532 -- 34031
AGACATATCTCTATCTCACGCTAAACCAGGAAATTAACAAATGATAAATATGGAAATCCAGGTAG
GGGGATAAGTATCAACAAATTCTCAATTTTTTTTTTTTTCTAAGAATTTTGTTCAGGGGGACAAA
TAGAATCTCTTCATCAGTGATTCGATGAAATATCTTGGATCTATGTTGAATTGGTAAGTACATGT
ATCAATCAAATGCATTTTTTTTTTTATTTTTTTTATTAGGATGGGAGTCAATTCAATTGGGTTCG
GCCTTGAAAACAATTCATTCCATTGATATTCATCAAATTGATATTTATCAAATTCAATAAACCAT
TTTTTTTTTACCTATATTTACTAATTTAGCCTATACTCTACTCATCAGGTAAATTAAATTTCTCG
TTTATGACGAAGCTACTATGAATCTACATCTACTCCATATATTTAATTATATTTAGTATATGTAT
ATTTAGATTTATTAGAATCTATTTCATATATTTAATATATTTCAT
Right flanking sequence: Indices 34094 -- 34593
TTACATAGATTTGATTTCTAATCACCATAGATATATCCTATCCGCATAATGGCTGATTCAGGAAT
TGAATCAAAGAGGCCCTTTTAACTCAGTGGTAGAGTAACGCTATGGTAAGGCGTAAGTCATCGGT
TCAAATCCGATAAGGGGCTTTACCTCTTTTTTCAGTTTTTTGATAAAACTCCAGCGGTAGTATTT
CTATTTGCATTTGCAAGGAGAATAGAAATATTGTTGATATTTGGAATAATTTGTAATAAAAAATT
ATACATTATAATTAATTATTAAATTTTAAATAATAGAAATTAGAAAAGTATTTTATTATAAAGTA
TTTTATTATAATAAATAATAATAATATAATAAATTAATGATAAGTTGACTCTTAAATCTCCAAAT
TTTTCTATTTTACATTATTCTAATCTAATTAATTATAAAGATTAAATTTTAAATTAATAAAAGAA
AAGTAAGTGGACCTAACCCATTGAATCATTACTATATCCACTATT
Found at i:34073 original size:10 final size:10
Alignment explanation
Indices: 34041--34099 Score: 68
Period size: 10 Copynumber: 6.1 Consensus size: 10
34031 TTTACTATAT
34041 TTACTTTACA
1 TTACTTTACA
* *
34051 TTACTATA-T
1 TTACTTTACA
34060 TTACTTTACA
1 TTACTTTACA
* *
34070 TTACTATA-T
1 TTACTTTACA
34079 TTACTTTACA
1 TTACTTTACA
34089 TTACTTTACA
1 TTACTTTACA
34099 T
1 T
34100 AGATTTGATT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 14 0.36
10 25 0.64
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (10 bp):
TTACTTTACA
Left flanking sequence: Indices 33541 -- 34040
TCTATCTCACGCTAAACCAGGAAATTAACAAATGATAAATATGGAAATCCAGGTAGGGGGATAAG
TATCAACAAATTCTCAATTTTTTTTTTTTTCTAAGAATTTTGTTCAGGGGGACAAATAGAATCTC
TTCATCAGTGATTCGATGAAATATCTTGGATCTATGTTGAATTGGTAAGTACATGTATCAATCAA
ATGCATTTTTTTTTTTATTTTTTTTATTAGGATGGGAGTCAATTCAATTGGGTTCGGCCTTGAAA
ACAATTCATTCCATTGATATTCATCAAATTGATATTTATCAAATTCAATAAACCATTTTTTTTTT
ACCTATATTTACTAATTTAGCCTATACTCTACTCATCAGGTAAATTAAATTTCTCGTTTATGACG
AAGCTACTATGAATCTACATCTACTCCATATATTTAATTATATTTAGTATATGTATATTTAGATT
TATTAGAATCTATTTCATATATTTAATATATTTCATTTACTATAT
Right flanking sequence: Indices 34100 -- 34599
AGATTTGATTTCTAATCACCATAGATATATCCTATCCGCATAATGGCTGATTCAGGAATTGAATC
AAAGAGGCCCTTTTAACTCAGTGGTAGAGTAACGCTATGGTAAGGCGTAAGTCATCGGTTCAAAT
CCGATAAGGGGCTTTACCTCTTTTTTCAGTTTTTTGATAAAACTCCAGCGGTAGTATTTCTATTT
GCATTTGCAAGGAGAATAGAAATATTGTTGATATTTGGAATAATTTGTAATAAAAAATTATACAT
TATAATTAATTATTAAATTTTAAATAATAGAAATTAGAAAAGTATTTTATTATAAAGTATTTTAT
TATAATAAATAATAATAATATAATAAATTAATGATAAGTTGACTCTTAAATCTCCAAATTTTTCT
ATTTTACATTATTCTAATCTAATTAATTATAAAGATTAAATTTTAAATTAATAAAAGAAAAGTAA
GTGGACCTAACCCATTGAATCATTACTATATCCACTATTATGATA
Found at i:34411 original size:16 final size:15
Alignment explanation
Indices: 34392--34426 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
34382 AATAATAGAA
34392 ATTAGAAAAGTATTTT
1 ATTA-AAAAGTATTTT
*
34408 ATTATAAAGTATTTT
1 ATTAAAAAGTATTTT
34423 ATTA
1 ATTA
34427 TAATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
ATTAAAAAGTATTTT
Left flanking sequence: Indices 33892 -- 34391
CTCTACTCATCAGGTAAATTAAATTTCTCGTTTATGACGAAGCTACTATGAATCTACATCTACTC
CATATATTTAATTATATTTAGTATATGTATATTTAGATTTATTAGAATCTATTTCATATATTTAA
TATATTTCATTTACTATATTTACTTTACATTACTATATTTACTTTACATTACTATATTTACTTTA
CATTACTTTACATAGATTTGATTTCTAATCACCATAGATATATCCTATCCGCATAATGGCTGATT
CAGGAATTGAATCAAAGAGGCCCTTTTAACTCAGTGGTAGAGTAACGCTATGGTAAGGCGTAAGT
CATCGGTTCAAATCCGATAAGGGGCTTTACCTCTTTTTTCAGTTTTTTGATAAAACTCCAGCGGT
AGTATTTCTATTTGCATTTGCAAGGAGAATAGAAATATTGTTGATATTTGGAATAATTTGTAATA
AAAAATTATACATTATAATTAATTATTAAATTTTAAATAATAGAA
Right flanking sequence: Indices 34427 -- 34926
TAATAAATAATAATAATATAATAAATTAATGATAAGTTGACTCTTAAATCTCCAAATTTTTCTAT
TTTACATTATTCTAATCTAATTAATTATAAAGATTAAATTTTAAATTAATAAAAGAAAAGTAAGT
GGACCTAACCCATTGAATCATTACTATATCCACTATTATGATATTCAAATTCGATATAGATGAAA
TTCGAACAGTAGATCCGCTTTTTCTTTCATTTTTATATTTCTTTTTCTTTGGACTCCGAAAAAAT
CTGTCGATATTTCTGATTAAATCTTCTTGTTCCTAGTTATTCTATAAGAATAAATTAATATTTTT
TTCCTCCACAGAAAAGTTTAGTTGAAGTCATAATATAAGACATATAATATATAAGAGAGATCTTA
AATATCTTTCTTTGATTCCAGAACACAAGATAAATTTATATTGATATCTATACTTATATAAGATT
TATATATAATAAACAAGATTTATATATCTATTAGACTATTAGATC
Found at i:34433 original size:18 final size:15
Alignment explanation
Indices: 34398--34429 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
34388 AGAAATTAGA
34398 AAAGTATTTTATTAT
1 AAAGTATTTTATTAT
34413 AAAGTATTTTATTAT
1 AAAGTATTTTATTAT
34428 AA
1 AA
34430 TAAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (15 bp):
AAAGTATTTTATTAT
Left flanking sequence: Indices 33898 -- 34397
TCATCAGGTAAATTAAATTTCTCGTTTATGACGAAGCTACTATGAATCTACATCTACTCCATATA
TTTAATTATATTTAGTATATGTATATTTAGATTTATTAGAATCTATTTCATATATTTAATATATT
TCATTTACTATATTTACTTTACATTACTATATTTACTTTACATTACTATATTTACTTTACATTAC
TTTACATAGATTTGATTTCTAATCACCATAGATATATCCTATCCGCATAATGGCTGATTCAGGAA
TTGAATCAAAGAGGCCCTTTTAACTCAGTGGTAGAGTAACGCTATGGTAAGGCGTAAGTCATCGG
TTCAAATCCGATAAGGGGCTTTACCTCTTTTTTCAGTTTTTTGATAAAACTCCAGCGGTAGTATT
TCTATTTGCATTTGCAAGGAGAATAGAAATATTGTTGATATTTGGAATAATTTGTAATAAAAAAT
TATACATTATAATTAATTATTAAATTTTAAATAATAGAAATTAGA
Right flanking sequence: Indices 34430 -- 34929
TAAATAATAATAATATAATAAATTAATGATAAGTTGACTCTTAAATCTCCAAATTTTTCTATTTT
ACATTATTCTAATCTAATTAATTATAAAGATTAAATTTTAAATTAATAAAAGAAAAGTAAGTGGA
CCTAACCCATTGAATCATTACTATATCCACTATTATGATATTCAAATTCGATATAGATGAAATTC
GAACAGTAGATCCGCTTTTTCTTTCATTTTTATATTTCTTTTTCTTTGGACTCCGAAAAAATCTG
TCGATATTTCTGATTAAATCTTCTTGTTCCTAGTTATTCTATAAGAATAAATTAATATTTTTTTC
CTCCACAGAAAAGTTTAGTTGAAGTCATAATATAAGACATATAATATATAAGAGAGATCTTAAAT
ATCTTTCTTTGATTCCAGAACACAAGATAAATTTATATTGATATCTATACTTATATAAGATTTAT
ATATAATAAACAAGATTTATATATCTATTAGACTATTAGATCATG
Found at i:35277 original size:14 final size:15
Alignment explanation
Indices: 35258--35295 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
35248 GTATTAAAAT
* *
35258 AATAAAATCTAA-AG
1 AATAAAATATAATAA
35272 AATAAAATATAATAA
1 AATAAAATATAATAA
35287 AATAAAATA
1 AATAAAATA
35296 ATAAGATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (15 bp):
AATAAAATATAATAA
Left flanking sequence: Indices 34758 -- 35257
CACAGAAAAGTTTAGTTGAAGTCATAATATAAGACATATAATATATAAGAGAGATCTTAAATATC
TTTCTTTGATTCCAGAACACAAGATAAATTTATATTGATATCTATACTTATATAAGATTTATATA
TAATAAACAAGATTTATATATCTATTAGACTATTAGATCATGGTTTCATGTACCAAATATTCCCA
TATCGATGCATACAATATATTTATTCCGACAATATAATTGTAATGTAGACTAGGTGTAAGAAAAA
TACTTTCATTTCAAGTTTACCATTATTTATAATATTGTAGTGAAGTGAATAATAGGAAAATTCAT
TCCCCTTATTCGTTTTTCATTTTCTTTTCTGACAGATAGAAAGTCAATAGAAAATATTCAAAGTG
CCTTTCTTGCTTTGATCTGTTAAAAGACATATTCTGGTGTTTTCTATTCATCTGAAAAAAAAAAG
AAATATAACAAAGATGACAATAAAAGAAGAATAAAGTATTAAAAT
Right flanking sequence: Indices 35296 -- 35795
ATAAGATATATGATACTTTAACTTTACTAATTTAATGCACATAAAAATTTTAAGAATAGATAAAA
ATGTTTCTTTGTATAAATCTTACGAACAAGATCCAAGAATAAGATTCATTTAATAGAATTAGAAT
GGACGAAGGAAGTCTGAGGATCAACTGGTAACAAGAGGGGGAATCACTTGTTCTTTGAACAGTTC
TTTCAAAAAACAAAAAATGCATCTATCCGATTGATGAGTCTTAAAAAAATTTATGGTTTATGGGA
TTATTAAGACTAAGAAGGAATAACCGAATTGAGTTCATGAATTTACCTATTACTTAAGTCAGGTT
ATAAACCAATAAAGCGTTTTTTTCTTCGAAATCCCTTAGGAATTAGAAAGGGAATGCAATGTACA
AGAAATCAAATCATACATAAATGATAGATACTTCAAAGGCCCTGAAAATGCTATGAGGTGTCCGG
AAATGGAAATGATTTAAAGTAGTTGAATAGGAGGATCACTATGAC
Found at i:35304 original size:23 final size:24
Alignment explanation
Indices: 35256--35305 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
35246 AAGTATTAAA
*
35256 ATAATAAAATCTAAAGAATAAAAT
1 ATAATAAAATCAAAAGAATAAAAT
* *
35280 ATAATAAAAT-AAAATAATAAGAT
1 ATAATAAAATCAAAAGAATAAAAT
35303 ATA
1 ATA
35306 TGATACTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (24 bp):
ATAATAAAATCAAAAGAATAAAAT
Left flanking sequence: Indices 34756 -- 35255
TCCACAGAAAAGTTTAGTTGAAGTCATAATATAAGACATATAATATATAAGAGAGATCTTAAATA
TCTTTCTTTGATTCCAGAACACAAGATAAATTTATATTGATATCTATACTTATATAAGATTTATA
TATAATAAACAAGATTTATATATCTATTAGACTATTAGATCATGGTTTCATGTACCAAATATTCC
CATATCGATGCATACAATATATTTATTCCGACAATATAATTGTAATGTAGACTAGGTGTAAGAAA
AATACTTTCATTTCAAGTTTACCATTATTTATAATATTGTAGTGAAGTGAATAATAGGAAAATTC
ATTCCCCTTATTCGTTTTTCATTTTCTTTTCTGACAGATAGAAAGTCAATAGAAAATATTCAAAG
TGCCTTTCTTGCTTTGATCTGTTAAAAGACATATTCTGGTGTTTTCTATTCATCTGAAAAAAAAA
AGAAATATAACAAAGATGACAATAAAAGAAGAATAAAGTATTAAA
Right flanking sequence: Indices 35306 -- 35805
TGATACTTTAACTTTACTAATTTAATGCACATAAAAATTTTAAGAATAGATAAAAATGTTTCTTT
GTATAAATCTTACGAACAAGATCCAAGAATAAGATTCATTTAATAGAATTAGAATGGACGAAGGA
AGTCTGAGGATCAACTGGTAACAAGAGGGGGAATCACTTGTTCTTTGAACAGTTCTTTCAAAAAA
CAAAAAATGCATCTATCCGATTGATGAGTCTTAAAAAAATTTATGGTTTATGGGATTATTAAGAC
TAAGAAGGAATAACCGAATTGAGTTCATGAATTTACCTATTACTTAAGTCAGGTTATAAACCAAT
AAAGCGTTTTTTTCTTCGAAATCCCTTAGGAATTAGAAAGGGAATGCAATGTACAAGAAATCAAA
TCATACATAAATGATAGATACTTCAAAGGCCCTGAAAATGCTATGAGGTGTCCGGAAATGGAAAT
GATTTAAAGTAGTTGAATAGGAGGATCACTATGACTATAGCCCTT
Found at i:38699 original size:10 final size:10
Alignment explanation
Indices: 38686--38716 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
38676 ATATAAAAAA
38686 ATATATATAG
1 ATATATATAG
38696 ATATATATAG
1 ATATATATAG
38706 ATATATATAG
1 ATATATATAG
38716 A
1 A
38717 AAGATGCAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (10 bp):
ATATATATAG
Left flanking sequence: Indices 38186 -- 38685
TTTGAACCTGTTCTTTCCATGACTCCTCTTAACTAACTGAAACAAGAGATCCAATACTTGATTGA
AGTAGGAATCAATTTGAGTCTACCATACCATACATATTGCTTGGGTAGATCTTAAAAAGTATTCT
TTTTTCTTTTCAACTCATTTAGATCTAATCTATTTTTTTCTGGCTCGGCTAGGTGAGATAGCCGA
GTCATTGACCTTTATGATACGGAGCCGGTCAAAACCAATAAAGACATAAATCTATTCAAAAGGAG
AGAGAGGGATTCGAACCCTCGATAGTTCCTTGCGAACTATACCGGTTTTCAAGACCGGAGCTATC
AACCACTCGGCCATCTCTCCAAAAGATAATTTCTATTTTACTATTTTATTTTTATTTTACCGAAC
CGAATAGGACATGGCTGTAGGAGTTGAGACCATCACTGTACTAGAGAAAGACATTCTAGATGTGA
GTCGATAAGTCTAGCTATCTATCTCTATATAATCTATATAAAAAA
Right flanking sequence: Indices 38717 -- 39216
AAGATGCAGGATCTAGCATGACCATTTGTGAAGTAAAAAACAACTCTCGATCCCATGTTTGAATA
AAGCGAAAAGGGGCGGTAATACGTCATAGAGAATCAATGGATTCATGGTACAACCCCCCCATGAT
GTATTTTTTTTTTACAATTTTTTGACTGATAGAAGGATCAAATGGTATAGTTCTTTTGTTGGTAG
CTTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTGCTACTTCA
TTAATCTTATTGATTAGTGTACCCGTTGTTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAA
TGTTGTCTTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTC
TTATCTATTGACCCTATTCGTTCCAGATATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGG
GTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAATACAAA
Found at i:39282 original size:22 final size:22
Alignment explanation
Indices: 39254--39306 Score: 99
Period size: 21 Copynumber: 2.5 Consensus size: 22
39244 GTCAAACTTT
39254 CTTGTAATTTTGAGTTTATAAA
1 CTTGTAATTTTGAGTTTATAAA
39276 CTTGTAA-TTTGAGTTTATAAA
1 CTTGTAATTTTGAGTTTATAAA
39297 CTTGTAATTT
1 CTTGTAATTT
39307 ATAAAAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.70
22 9 0.30
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (22 bp):
CTTGTAATTTTGAGTTTATAAA
Left flanking sequence: Indices 38754 -- 39253
AAACAACTCTCGATCCCATGTTTGAATAAAGCGAAAAGGGGCGGTAATACGTCATAGAGAATCAA
TGGATTCATGGTACAACCCCCCCATGATGTATTTTTTTTTTACAATTTTTTGACTGATAGAAGGA
TCAAATGGTATAGTTCTTTTGTTGGTAGCTTGGAGGATTAGAAACATGACTATTGCTTTCCAATT
GGCTGTTTTTGCATTAATTGCTACTTCATTAATCTTATTGATTAGTGTACCCGTTGTTTTTTCTT
CTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATTATGGATTGGATTA
GTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAAAATG
AAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAA
AATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTT
Right flanking sequence: Indices 39307 -- 39806
ATAAAAATTAATTTATAAAAATAATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGT
GATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAATGAATTTAATATCTAATATATAATAT
AATAATAAGGTACTAATATCTAATATAATTCTAATATTTCTATCTAATATTTCTAATATAATCCT
AATATAAAATAATATTAATAAAATAATATTAATATAATAATATATTAATATTTATATATTTTAAA
TATATTTTAATATATAAATAAAATATATATATAAATTTAATATATAAATGTATAAAAAATGTTTA
ATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATATAGAAATCATATTATTAA
TATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATATATATAATAAACCATATA
TAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATA
Found at i:39331 original size:13 final size:14
Alignment explanation
Indices: 39301--39332 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
39291 TATAAACTTG
39301 TAATTTATAAAAAT
1 TAATTTATAAAAAT
39315 TAATTTATAAAAA-
1 TAATTTATAAAAAT
39328 TAATT
1 TAATT
39333 AAATGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTTATAAAAAT
Left flanking sequence: Indices 38801 -- 39300
TACGTCATAGAGAATCAATGGATTCATGGTACAACCCCCCCATGATGTATTTTTTTTTTACAATT
TTTTGACTGATAGAAGGATCAAATGGTATAGTTCTTTTGTTGGTAGCTTGGAGGATTAGAAACAT
GACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTGCTACTTCATTAATCTTATTGATTAGTG
TACCCGTTGTTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACA
TCATTATGGATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTC
GTTCCAGATATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAG
TTCAATATAAATTCCCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCT
TGTAATTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAACTTG
Right flanking sequence: Indices 39333 -- 39832
AAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATC
TAATTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAATAT
AATTCTAATATTTCTATCTAATATTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAA
TATTAATATAATAATATATTAATATTTATATATTTTAAATATATTTTAATATATAAATAAAATAT
ATATATAAATTTAATATATAAATGTATAAAAAATGTTTAATATATAAAATGAAAATATTATTAAT
ATAGAAATCATATTATTAATATAGAAATCATATTATTAATATAGAAATCATATTAATATAGAAAT
CATATTAATAAAGAAATCATATATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGA
AATCAAACCAATATATATAACCTATATAGATAGAAATTAAAAAAA
Found at i:39347 original size:16 final size:16
Alignment explanation
Indices: 39322--39358 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
39312 AATTAATTTA
39322 TAAAAATAATTAAATG
1 TAAAAATAATTAAATG
*
39338 TAAAAGTAATTAAATG
1 TAAAAATAATTAAATG
39354 TAAAA
1 TAAAA
39359 TAAAATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (16 bp):
TAAAAATAATTAAATG
Left flanking sequence: Indices 38822 -- 39321
ATTCATGGTACAACCCCCCCATGATGTATTTTTTTTTTACAATTTTTTGACTGATAGAAGGATCA
AATGGTATAGTTCTTTTGTTGGTAGCTTGGAGGATTAGAAACATGACTATTGCTTTCCAATTGGC
TGTTTTTGCATTAATTGCTACTTCATTAATCTTATTGATTAGTGTACCCGTTGTTTTTTCTTCTC
CTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATTATGGATTGGATTAGTC
TTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAAAATGAAA
TGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAAT
ACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAAC
TTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTA
Right flanking sequence: Indices 39359 -- 39858
TAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAATGAATTTAATATC
TAATATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAATATTTCTATCTAATATTT
CTAATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAATAATATATTAATATT
TATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATATATAAATGTA
TAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATATAGAA
ATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATATATAT
AATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTATA
TAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAA
Found at i:39404 original size:19 final size:19
Alignment explanation
Indices: 39380--39420 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
39370 GTGATAAAAA
39380 AATTATTGGAAAGGAATCT
1 AATTATTGGAAAGGAATCT
* * *
39399 AATTATTGTAAATGAATTT
1 AATTATTGGAAAGGAATCT
39418 AAT
1 AAT
39421 ATCTAATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.15, T:0.39
Consensus pattern (19 bp):
AATTATTGGAAAGGAATCT
Left flanking sequence: Indices 38880 -- 39379
AGGATCAAATGGTATAGTTCTTTTGTTGGTAGCTTGGAGGATTAGAAACATGACTATTGCTTTCC
AATTGGCTGTTTTTGCATTAATTGCTACTTCATTAATCTTATTGATTAGTGTACCCGTTGTTTTT
TCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATTATGGATTGG
ATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAA
AATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTC
CCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTT
TATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAA
ATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAA
Right flanking sequence: Indices 39421 -- 39920
ATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAATATTTCTATCTAATA
TTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAATAATATATTAAT
ATTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATATATAAAT
GTATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATATA
GAAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATATA
TATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCT
ATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAA
TTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATA
Found at i:39469 original size:11 final size:11
Alignment explanation
Indices: 39450--39508 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
39440 AATAAGGTAC
39450 TAATATCTAATA
1 TAAT-TCTAATA
39462 TAATTCTAATA
1 TAATTCTAATA
*
39473 T--TTCTATCTAA
1 TAATTCTA-AT-A
*
39484 TATTTCTAATA
1 TAATTCTAATA
*
39495 TAATCCTAATA
1 TAATTCTAATA
39506 TAA
1 TAA
39509 AATAATATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.13
10 1 0.03
11 23 0.59
12 5 0.13
13 5 0.13
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (11 bp):
TAATTCTAATA
Left flanking sequence: Indices 38950 -- 39449
GCTGTTTTTGCATTAATTGCTACTTCATTAATCTTATTGATTAGTGTACCCGTTGTTTTTTCTTC
TCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATTATGGATTGGATTAG
TCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAAAATGA
AATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAA
ATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAA
ACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTA
AAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTAT
TGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTAC
Right flanking sequence: Indices 39509 -- 40008
AATAATATTAATAAAATAATATTAATATAATAATATATTAATATTTATATATTTTAAATATATTT
TAATATATAAATAAAATATATATATAAATTTAATATATAAATGTATAAAAAATGTTTAATATATA
AAATGAAAATATTATTAATATAGAAATCATATTATTAATATAGAAATCATATTATTAATATAGAA
ATCATATTAATATAGAAATCATATTAATAAAGAAATCATATATATAATAAACCATATATAGAAAC
CAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTATATAGATAGAAATTAAAAAAAT
AAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAATTATCTAATTCTATATAATTAAA
TATAGAAATAAACATTATTATAATTTGAATTTTGTAATATAATGGAATATGATTTTGACATAATT
CTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAGAATAT
Found at i:39484 original size:13 final size:13
Alignment explanation
Indices: 39466--39491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39456 CTAATATAAT
39466 TCTAATATTTCTA
1 TCTAATATTTCTA
39479 TCTAATATTTCTA
1 TCTAATATTTCTA
39492 ATATAATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
TCTAATATTTCTA
Left flanking sequence: Indices 38966 -- 39465
TTGCTACTTCATTAATCTTATTGATTAGTGTACCCGTTGTTTTTTCTTCTCCTGATGGTTGGTCG
AGTAACAAAAATGTTGTCTTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTAGGTAT
CCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAAAATGAAATGACCCCTCCCCCG
AATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAATACAAATAAAGAAAA
AAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAACTTGTAATTTGAGTT
TATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTAAAAGTAATTAAATGTA
AAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAATGAATTTAAT
ATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAAT
Right flanking sequence: Indices 39492 -- 39991
ATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAATAATATATTAATATTTAT
ATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATATATAAATGTATAA
AAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATATAGAAATC
ATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATATATATAAT
AAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTATATAG
ATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAATTATCT
AATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATATAATGGAAT
ATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAAT
Found at i:39520 original size:16 final size:16
Alignment explanation
Indices: 39501--39552 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
39491 AATATAATCC
39501 TAATATAAAATAATAT
1 TAATATAAAATAATAT
39517 T-A-ATAAAATAATAT
1 TAATATAAAATAATAT
39531 TAATATAATAAT-ATAT
1 TAATATAA-AATAATAT
39547 TAATAT
1 TAATAT
39553 TTATATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
14 13 0.39
15 2 0.06
16 15 0.45
17 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TAATATAAAATAATAT
Left flanking sequence: Indices 39001 -- 39500
GTTGTTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATT
ATGGATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCC
AGATATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAA
TATAAATTCCCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAA
TTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAA
AATAATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAA
AGGAATCTAATTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATAT
CTAATATAATTCTAATATTTCTATCTAATATTTCTAATATAATCC
Right flanking sequence: Indices 39553 -- 40052
TTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATATATAAATGT
ATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATATAGA
AATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATATATA
TAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTAT
ATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAATT
ATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATATAATG
GAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAGAATA
TCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGC
Found at i:39524 original size:14 final size:14
Alignment explanation
Indices: 39505--39544 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
39495 TAATCCTAAT
39505 ATAAAATAATATTA
1 ATAAAATAATATTA
39519 ATAAAATAATATTA
1 ATAAAATAATATTA
*
39533 ATATAATAATAT
1 ATAAAATAATAT
39545 ATTAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAAAATAATATTA
Left flanking sequence: Indices 39005 -- 39504
TTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATTATGG
ATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGAT
ATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATA
AATTCCCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTT
GAGTTTATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATA
ATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGA
ATCTAATTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAA
TATAATTCTAATATTTCTATCTAATATTTCTAATATAATCCTAAT
Right flanking sequence: Indices 39545 -- 40044
ATTAATATTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATAT
ATAAATGTATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATT
AATATAGAAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAAT
CATATATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATA
TAACCTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAG
ATTGAATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTA
ATATAATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGA
AAAGAATATCCTAGCATAGCTATTCATAAATATAAATATGATCCA
Found at i:39528 original size:30 final size:30
Alignment explanation
Indices: 39494--39551 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
39484 TATTTCTAAT
*
39494 ATAATCCTAATATAA-AATAATATTAATAAA
1 ATAATACTAATATAATAAT-ATATTAATAAA
*
39524 ATAATATTAATATAATAATATATTAATA
1 ATAATACTAATATAATAATATATTAATA
39552 TTTATATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (30 bp):
ATAATACTAATATAATAATATATTAATAAA
Left flanking sequence: Indices 38994 -- 39493
TGTACCCGTTGTTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTA
CATCATTATGGATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTAT
TCGTTCCAGATATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAA
AGTTCAATATAAATTCCCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTT
CTTGTAATTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAAT
TTATAAAAATAATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATT
ATTGGAAAGGAATCTAATTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTA
CTAATATCTAATATAATTCTAATATTTCTATCTAATATTTCTAAT
Right flanking sequence: Indices 39552 -- 40051
TTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATATATAAATG
TATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATATAG
AAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATATAT
ATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTA
TATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAAT
TATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATATAAT
GGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAGAAT
ATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTG
Found at i:39558 original size:14 final size:15
Alignment explanation
Indices: 39501--39613 Score: 71
Period size: 16 Copynumber: 7.7 Consensus size: 15
39491 AATATAATCC
*
39501 TAATATAAAATAATAT
1 TAATATATAAT-ATAT
39517 TAATA-A-AATAATAT
1 TAATATATAAT-ATAT
39531 TAATATAATAATATAT
1 TAATAT-ATAATATAT
* *
39547 TAATATTTATATATTT
1 TAATATATA-ATATAT
39563 TAA-ATAT-AT-T-T
1 TAATATATAATATAT
39574 TAATATATAA-ATA-
1 TAATATATAATATAT
* *
39587 AAATATATATATAAATT
1 TAATATATA-ATATA-T
39604 TAATATATAA
1 TAATATATAA
39614 ATGTATAAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
11 4 0.05
12 5 0.06
13 12 0.15
14 14 0.18
15 8 0.10
16 25 0.32
17 11 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATATATAATATAT
Left flanking sequence: Indices 39001 -- 39500
GTTGTTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTCTTTTCCGGTACATCATT
ATGGATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCC
AGATATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAA
TATAAATTCCCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAA
TTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAA
AATAATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAA
AGGAATCTAATTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATAT
CTAATATAATTCTAATATTTCTATCTAATATTTCTAATATAATCC
Right flanking sequence: Indices 39614 -- 40113
ATGTATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAATA
TAGAAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCATA
TATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAAC
CTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTG
AATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATAT
AATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAG
AATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACGAAAA
AAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAG
Found at i:39598 original size:17 final size:17
Alignment explanation
Indices: 39576--39612 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
39566 ATATATTTTA
39576 ATATATAAATAAAATAT
1 ATATATAAATAAAATAT
**
39593 ATATATAAATTTAATAT
1 ATATATAAATAAAATAT
39610 ATA
1 ATA
39613 AATGTATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATAAATAAAATAT
Left flanking sequence: Indices 39076 -- 39575
TTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAAA
ATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCC
CAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTT
ATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAA
TGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAA
TTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAAT
TCTAATATTTCTATCTAATATTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAATAT
TAATATAATAATATATTAATATTTATATATTTTAAATATATTTTA
Right flanking sequence: Indices 39613 -- 40112
AATGTATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAAT
ATAGAAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCAT
ATATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAA
CCTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATT
GAATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATA
TAATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAA
GAATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACGAAA
AAAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAA
Found at i:39609 original size:40 final size:43
Alignment explanation
Indices: 39483--39612 Score: 105
Period size: 41 Copynumber: 3.1 Consensus size: 43
39473 TTTCTATCTA
*
39483 ATATTTCTAATATAATCCTAATATA-AAATA-ATAT-TAA-TAAAAT
1 ATATTT-TAATATAA---TAATATATAAATATATATATAATTTAAAT
* * * *
39526 A-ATATTAATATAATAATATATTAATATTTATATATTTTAAAT
1 ATATTTTAATATAATAATATATAAATATATATATAATTTAAAT
39568 ATATTTTAATAT-ATAA-ATA-AAATATATATATAAATTTAATAT
1 ATATTTTAATATAATAATATATAAATATATATAT-AATTTAA-AT
39610 ATA
1 ATA
39613 AATGTATAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
38 7 0.10
39 4 0.06
40 13 0.18
41 19 0.27
42 18 0.25
43 10 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (43 bp):
ATATTTTAATATAATAATATATAAATATATATATAATTTAAAT
Left flanking sequence: Indices 38983 -- 39482
TTATTGATTAGTGTACCCGTTGTTTTTTCTTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGT
CTTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTAGGTATCCTTAATTCTCTTATCT
ATTGACCCTATTCGTTCCAGATATAAAAATGAAATGACCCCTCCCCCGAATTCTTTAGGGTTACG
AGATACATTAAAGTTCAATATAAATTCCCAAAATACAAATAAAGAAAAAAAAAAATAGAGGGAGG
GGTCAAACTTTCTTGTAATTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTA
TAAAAATTAATTTATAAAAATAATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTG
ATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAATGAATTTAATATCTAATATATAATATA
ATAATAAGGTACTAATATCTAATATAATTCTAATATTTCTATCTA
Right flanking sequence: Indices 39613 -- 40112
AATGTATAAAAAATGTTTAATATATAAAATGAAAATATTATTAATATAGAAATCATATTATTAAT
ATAGAAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAATAAAGAAATCAT
ATATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAA
CCTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATT
GAATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATA
TAATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAA
GAATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACGAAA
AAAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAA
Found at i:39647 original size:24 final size:23
Alignment explanation
Indices: 39602--39665 Score: 58
Period size: 24 Copynumber: 2.6 Consensus size: 23
39592 TATATATAAA
39602 TTTAATATATAAATGTATAAAAAAT
1 TTTAATATATAAATG--TAAAAAAT
*
39627 GTTTAATATATAAAATG-AAAATAT
1 -TTTAATATAT-AAATGTAAAAAAT
*
39651 TATTAATATAGAAAT
1 T-TTAATATATAAAT
39666 CATATTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 5 0.15
24 14 0.41
26 10 0.29
27 5 0.15
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (23 bp):
TTTAATATATAAATGTAAAAAAT
Left flanking sequence: Indices 39102 -- 39601
TTCTCTTATCTATTGACCCTATTCGTTCCAGATATAAAAATGAAATGACCCCTCCCCCGAATTCT
TTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAATACAAATAAAGAAAAAAAAAA
ATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAA
CTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTAAAAGTAATTAAATGTAAAATAA
AATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAATGAATTTAATATCTAA
TATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAATATTTCTATCTAATATTTCTA
ATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAATAATATATTAATATTTAT
ATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAA
Right flanking sequence: Indices 39666 -- 40165
CATATTATTAATATAGAAATCATATTATTAATATAGAAATCATATTAATATAGAAATCATATTAA
TAAAGAAATCATATATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAAC
CAATATATATAACCTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAA
CAAAAATAGATTGAATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTG
AATTTTGTAATATAATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAA
TTGTCCTGAAAAGAATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTA
TCAAAAACGAAAAAAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGA
CGCGGGTTCGATTCCCGCTATCCGCCCAAGGTCCAAGGTAATTTA
Found at i:39671 original size:17 final size:17
Alignment explanation
Indices: 39651--39744 Score: 125
Period size: 17 Copynumber: 5.2 Consensus size: 17
39641 ATGAAAATAT
39651 TATTAATATAGAAATCATA
1 TATTAATATAGAAATC--A
39670 TTATTAATATAGAAATCATA
1 -TATTAATATAGAAATC--A
39690 TTATTAATATAGAAATCA
1 -TATTAATATAGAAATCA
39708 TATTAATATAGAAATCA
1 TATTAATATAGAAATCA
*
39725 TATTAATAAAGAAATCA
1 TATTAATATAGAAATCA
39742 TAT
1 TAT
39745 ATATAATAAA
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
17 36 0.49
18 1 0.01
20 36 0.49
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.37
Consensus pattern (17 bp):
TATTAATATAGAAATCA
Left flanking sequence: Indices 39151 -- 39650
CCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAATACAA
ATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAACTTGT
AATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTAAAAGTA
ATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAA
TGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAATATTT
CTATCTAATATTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAATA
ATATATTAATATTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTA
ATATATAAATGTATAAAAAATGTTTAATATATAAAATGAAAATAT
Right flanking sequence: Indices 39745 -- 40244
ATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACC
TATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGA
ATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATATA
ATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAGA
ATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACGAAAAA
AAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGACGCGGGTTCGATTC
CCGCTATCCGCCCAAGGTCCAAGGTAATTTATTTAATAGGATAAAAGATTCAGTATAGTTGACCA
TGATCGTATAGTGATTCTATACCCCCCCTTTTTTTCTTTCCTCCC
Found at i:39672 original size:20 final size:20
Alignment explanation
Indices: 39647--39729 Score: 145
Period size: 20 Copynumber: 4.3 Consensus size: 20
39637 TAAAATGAAA
39647 ATATTATTAATATAGAAATC
1 ATATTATTAATATAGAAATC
39667 ATATTATTAATATAGAAATC
1 ATATTATTAATATAGAAATC
39687 ATATTATTAATATAGAAATC
1 ATATTATTAATATAGAAATC
39707 --A-TATTAATATAGAAATC
1 ATATTATTAATATAGAAATC
39724 ATATTA
1 ATATTA
39730 ATAAAGAAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.27
18 1 0.02
19 1 0.02
20 42 0.70
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (20 bp):
ATATTATTAATATAGAAATC
Left flanking sequence: Indices 39147 -- 39646
TGACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAAT
ACAAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAAC
TTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTAAA
AGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTG
TAAATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAAT
ATTTCTATCTAATATTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATAT
AATAATATATTAATATTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAA
TTTAATATATAAATGTATAAAAAATGTTTAATATATAAAATGAAA
Right flanking sequence: Indices 39730 -- 40229
ATAAAGAAATCATATATATAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAA
CCAATATATATAACCTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAA
ACAAAAATAGATTGAATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTT
GAATTTTGTAATATAATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTA
ATTGTCCTGAAAAGAATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGT
ATCAAAAACGAAAAAAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAG
ACGCGGGTTCGATTCCCGCTATCCGCCCAAGGTCCAAGGTAATTTATTTAATAGGATAAAAGATT
CAGTATAGTTGACCATGATCGTATAGTGATTCTATACCCCCCCTT
Found at i:39750 original size:17 final size:18
Alignment explanation
Indices: 39654--39747 Score: 129
Period size: 20 Copynumber: 5.1 Consensus size: 18
39644 AAAATATTAT
39654 TAATATAGAAATCATATTA
1 TAATATAGAAATCATA-TA
39673 TTAATATAGAAATCATATTA
1 -TAATATAGAAATCATA-TA
39693 TTAATATAGAAATCATAT-
1 -TAATATAGAAATCATATA
39711 TAATATAGAAATCATAT-
1 TAATATAGAAATCATATA
*
39728 TAATAAAGAAATCATATA
1 TAATATAGAAATCATATA
39746 TA
1 TA
39748 TAATAAACCA
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
17 33 0.46
18 2 0.03
19 1 0.01
20 36 0.50
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
TAATATAGAAATCATATA
Left flanking sequence: Indices 39154 -- 39653
TCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAATACAAATA
AAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAACTTGTAAT
TTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTAAAAGTAATT
AAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTGTAAATGA
ATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAATATTTCTA
TCTAATATTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAATAATA
TATTAATATTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATTTAATA
TATAAATGTATAAAAAATGTTTAATATATAAAATGAAAATATTAT
Right flanking sequence: Indices 39748 -- 40247
TAATAAACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTAT
ATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAATT
ATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATATAATG
GAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAGAATA
TCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACGAAAAAAAA
AATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGACGCGGGTTCGATTCCCG
CTATCCGCCCAAGGTCCAAGGTAATTTATTTAATAGGATAAAAGATTCAGTATAGTTGACCATGA
TCGTATAGTGATTCTATACCCCCCCTTTTTTTCTTTCCTCCCGTT
Found at i:39752 original size:37 final size:39
Alignment explanation
Indices: 39649--39752 Score: 139
Period size: 37 Copynumber: 2.8 Consensus size: 39
39639 AAATGAAAAT
39649 ATTATTAATATAGAAATCATAT-TATTAATATAGAAATCA
1 ATTATTAATATAGAAATCATATATA-TAATATAGAAATCA
39688 TATTATTAATATAGAAATC--ATAT-TAATATAGAAATC-
1 -ATTATTAATATAGAAATCATATATATAATATAGAAATCA
*
39724 A-TATTAATAAAGAAATCATATATATAATA
1 ATTATTAATATAGAAATCATATATATAATA
39753 AACCATATAT
Statistics
Matches: 59, Mismatches: 1, Indels: 11
0.83 0.01 0.15
Matches are distributed among these distances:
34 15 0.25
35 1 0.02
36 4 0.07
37 18 0.31
38 2 0.03
39 1 0.02
40 18 0.31
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (39 bp):
ATTATTAATATAGAAATCATATATATAATATAGAAATCA
Left flanking sequence: Indices 39149 -- 39648
ACCCCTCCCCCGAATTCTTTAGGGTTACGAGATACATTAAAGTTCAATATAAATTCCCAAAATAC
AAATAAAGAAAAAAAAAAATAGAGGGAGGGGTCAAACTTTCTTGTAATTTTGAGTTTATAAACTT
GTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTAATTTATAAAAATAATTAAATGTAAAAG
TAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAATTATTGGAAAGGAATCTAATTATTGTA
AATGAATTTAATATCTAATATATAATATAATAATAAGGTACTAATATCTAATATAATTCTAATAT
TTCTATCTAATATTTCTAATATAATCCTAATATAAAATAATATTAATAAAATAATATTAATATAA
TAATATATTAATATTTATATATTTTAAATATATTTTAATATATAAATAAAATATATATATAAATT
TAATATATAAATGTATAAAAAATGTTTAATATATAAAATGAAAAT
Right flanking sequence: Indices 39753 -- 40252
AACCATATATAGAAACCAAGAAACCAATATATAGAAATCAAACCAATATATATAACCTATATAGA
TAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAGATTGAATTATCTA
ATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTAATATAATGGAATA
TGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGAAAAGAATATCCTA
GCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACGAAAAAAAAAATGC
GGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGACGCGGGTTCGATTCCCGCTATC
CGCCCAAGGTCCAAGGTAATTTATTTAATAGGATAAAAGATTCAGTATAGTTGACCATGATCGTA
TAGTGATTCTATACCCCCCCTTTTTTTCTTTCCTCCCGTTCCAAA
Found at i:39784 original size:22 final size:19
Alignment explanation
Indices: 39752--39804 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
39742 TATATATAAT
39752 AAACC-ATATATAGAAACC
1 AAACCAATATATAGAAACC
*
39770 AAGAAACCAATATATAGAAATC
1 ---AAACCAATATATAGAAACC
39792 AAACCAATATATA
1 AAACCAATATATA
39805 TAACCTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 13 0.43
21 5 0.17
22 12 0.40
ACGTcount: A:0.58, C:0.17, G:0.06, T:0.19
Consensus pattern (19 bp):
AAACCAATATATAGAAACC
Left flanking sequence: Indices 39252 -- 39751
TTCTTGTAATTTTGAGTTTATAAACTTGTAATTTGAGTTTATAAACTTGTAATTTATAAAAATTA
ATTTATAAAAATAATTAAATGTAAAAGTAATTAAATGTAAAATAAAATGTAATGTGATAAAAAAA
TTATTGGAAAGGAATCTAATTATTGTAAATGAATTTAATATCTAATATATAATATAATAATAAGG
TACTAATATCTAATATAATTCTAATATTTCTATCTAATATTTCTAATATAATCCTAATATAAAAT
AATATTAATAAAATAATATTAATATAATAATATATTAATATTTATATATTTTAAATATATTTTAA
TATATAAATAAAATATATATATAAATTTAATATATAAATGTATAAAAAATGTTTAATATATAAAA
TGAAAATATTATTAATATAGAAATCATATTATTAATATAGAAATCATATTATTAATATAGAAATC
ATATTAATATAGAAATCATATTAATAAAGAAATCATATATATAAT
Right flanking sequence: Indices 39805 -- 40304
TAACCTATATAGATAGAAATTAAAAAAATAAAATTATATAATCAAATTATATAAAACAAAAATAG
ATTGAATTATCTAATTCTATATAATTAAATATAGAAATAAACATTATTATAATTTGAATTTTGTA
ATATAATGGAATATGATTTTGACATAATTCTAATAGAATAGGAAATAGAATAGTAATTGTCCTGA
AAAGAATATCCTAGCATAGCTATTCATAAATATAAATATGATCCAGACATTGCGTATCAAAAACG
AAAAAAAAAATGCGGATATAGTCGAATGGTAAAATTTCTCTTTGCCAAGGAGAAGACGCGGGTTC
GATTCCCGCTATCCGCCCAAGGTCCAAGGTAATTTATTTAATAGGATAAAAGATTCAGTATAGTT
GACCATGATCGTATAGTGATTCTATACCCCCCCTTTTTTTCTTTCCTCCCGTTCCAAAAGAAAAG
TGGTCATTAATTACTAGTTAAGTTAACAGGGATAAGTCTCAATTT
Found at i:45959 original size:18 final size:19
Alignment explanation
Indices: 45932--45967 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
45922 ACAGAAAAGA
45932 AAAATATAAAATATAGAAT
1 AAAATATAAAATATAGAAT
45951 AAAAT-TAAAATATAGAA
1 AAAATATAAAATATAGAA
45968 AATATCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (19 bp):
AAAATATAAAATATAGAAT
Left flanking sequence: Indices 45432 -- 45931
CAAAATTTTCACTTCTGGTTCCGGCGAACGAATAATCATTGAGTCCTCCTCTTTCTCTTTCCGGA
CAACACATACAAAGAGACCCGCCAACAGTCAAGTAATTAACGAATCTATGAGAAATGTTGAGAAT
TTGTTTCTTTCTCTTCTATCTCCCATCTAGTTTCTTTAGTTATTCACTGGAGCAATTATGATCTG
GAAGTCGATCCAGGGCAAGTGTTCGGATCTATTATGACATAGCCGCGGGGCGCTCAAGGGACCTT
TCTGGGCTTTGAATTGATGCAAAAACAATTTTTTGCGCAACCTAATATTCCTATCTTAATGAAAA
GTTCCTAGATGGGGTTTCTTTATGTTTTACATAGAACATATTACTATTACTCTTACTCTATTCCA
AATCAGATTATAAGTCATTAGTCATTCCTAAGAGACACCTCACTATCTATATTTAAGCATTCAAA
AGGTATCTTTTATTCATTTTAATAACAGAAAAATAACAGAAAAGA
Right flanking sequence: Indices 45968 -- 46467
AATATCTATTCTCTATTGTCTGTATTTGTGTCGTATATCGTTTATTCCTATGAAATCTCAGATGA
AAAGAAACAATTTTAGAAGGAGTATAATGAACTTCATAAAATTCGTTGATCGGTTCTTCCCACAG
AAATGATCCATTTTATTTGACTGATGGGGACAATAAACAATTAATTATAACAAATTAAAATATAA
AAATAATAAAAATATAACAAATACTAAAAACAAATATTAAAAAACAAATACTAAATAATAATATA
ATAAATAAAAAAAAAGAGAGTCTTCCTATCTTATTCGAAACGCCTTGTAATCTTCAACCAATTCT
GCGCTTCAATATAATTTCCAGGAGTAAGCGCTAGAGCTTGTTTCCAATATTCAGCGGCTTGATCG
AACCACGCCTCCGCAATTTCAGAGTCTCCTTGCCGAATGGCCTGTTCCCCTCGGTCGGAATAGGC
GAGGAATTTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCT
Found at i:46173 original size:9 final size:8
Alignment explanation
Indices: 46154--46192 Score: 51
Period size: 9 Copynumber: 4.5 Consensus size: 8
46144 ATAACAAATT
46154 AAAATATA
1 AAAATATA
46162 AAAATAATA
1 AAAAT-ATA
46171 AAAATATA
1 AAAATATA
46179 ACAAATACTA
1 A-AAATA-TA
46189 AAAA
1 AAAA
46193 CAAATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 9 0.32
9 16 0.57
10 3 0.11
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATATA
Left flanking sequence: Indices 45654 -- 46153
TCTATTATGACATAGCCGCGGGGCGCTCAAGGGACCTTTCTGGGCTTTGAATTGATGCAAAAACA
ATTTTTTGCGCAACCTAATATTCCTATCTTAATGAAAAGTTCCTAGATGGGGTTTCTTTATGTTT
TACATAGAACATATTACTATTACTCTTACTCTATTCCAAATCAGATTATAAGTCATTAGTCATTC
CTAAGAGACACCTCACTATCTATATTTAAGCATTCAAAAGGTATCTTTTATTCATTTTAATAACA
GAAAAATAACAGAAAAGAAAAATATAAAATATAGAATAAAATTAAAATATAGAAAATATCTATTC
TCTATTGTCTGTATTTGTGTCGTATATCGTTTATTCCTATGAAATCTCAGATGAAAAGAAACAAT
TTTAGAAGGAGTATAATGAACTTCATAAAATTCGTTGATCGGTTCTTCCCACAGAAATGATCCAT
TTTATTTGACTGATGGGGACAATAAACAATTAATTATAACAAATT
Right flanking sequence: Indices 46193 -- 46692
CAAATATTAAAAAACAAATACTAAATAATAATATAATAAATAAAAAAAAAGAGAGTCTTCCTATC
TTATTCGAAACGCCTTGTAATCTTCAACCAATTCTGCGCTTCAATATAATTTCCAGGAGTAAGCG
CTAGAGCTTGTTTCCAATATTCAGCGGCTTGATCGAACCACGCCTCCGCAATTTCAGAGTCTCCT
TGCCGAATGGCCTGTTCCCCTCGGTCGGAATAGGCGAGGAATTTCCTTCCCTTAGAACCGTACTT
GAGAGTTTCCTACCTCATACGGCTCCGCAGTTAATTCTTTGGATGCCCCATTTTTTCTCGAGTTA
ACCAAAAGAGGGTAATCACATGAGTTTCAAACTTGAATTTGGATTTGATTAATAATCAGTTTTAT
CTTTTCTCCCACCTTCAGAAGAATAAAACAAACAAATATAGGCATTCTACTATCGTTAGAATTTT
CTGAAAGGTAACTATCTCGATTTCATATATAAATTTATATAGATA
Found at i:46176 original size:17 final size:18
Alignment explanation
Indices: 46143--46192 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
46133 AACAATTAAT
46143 TATAACAAAT--T-AAAA
1 TATAACAAATAATAAAAA
46158 TATAA-AAATAATAAAAA
1 TATAACAAATAATAAAAA
*
46175 TATAACAAATACTAAAAA
1 TATAACAAATAATAAAAA
46193 CAAATATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 4 0.13
15 5 0.17
16 1 0.03
17 9 0.30
18 11 0.37
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (18 bp):
TATAACAAATAATAAAAA
Left flanking sequence: Indices 45643 -- 46142
AAGTGTTCGGATCTATTATGACATAGCCGCGGGGCGCTCAAGGGACCTTTCTGGGCTTTGAATTG
ATGCAAAAACAATTTTTTGCGCAACCTAATATTCCTATCTTAATGAAAAGTTCCTAGATGGGGTT
TCTTTATGTTTTACATAGAACATATTACTATTACTCTTACTCTATTCCAAATCAGATTATAAGTC
ATTAGTCATTCCTAAGAGACACCTCACTATCTATATTTAAGCATTCAAAAGGTATCTTTTATTCA
TTTTAATAACAGAAAAATAACAGAAAAGAAAAATATAAAATATAGAATAAAATTAAAATATAGAA
AATATCTATTCTCTATTGTCTGTATTTGTGTCGTATATCGTTTATTCCTATGAAATCTCAGATGA
AAAGAAACAATTTTAGAAGGAGTATAATGAACTTCATAAAATTCGTTGATCGGTTCTTCCCACAG
AAATGATCCATTTTATTTGACTGATGGGGACAATAAACAATTAAT
Right flanking sequence: Indices 46193 -- 46692
CAAATATTAAAAAACAAATACTAAATAATAATATAATAAATAAAAAAAAAGAGAGTCTTCCTATC
TTATTCGAAACGCCTTGTAATCTTCAACCAATTCTGCGCTTCAATATAATTTCCAGGAGTAAGCG
CTAGAGCTTGTTTCCAATATTCAGCGGCTTGATCGAACCACGCCTCCGCAATTTCAGAGTCTCCT
TGCCGAATGGCCTGTTCCCCTCGGTCGGAATAGGCGAGGAATTTCCTTCCCTTAGAACCGTACTT
GAGAGTTTCCTACCTCATACGGCTCCGCAGTTAATTCTTTGGATGCCCCATTTTTTCTCGAGTTA
ACCAAAAGAGGGTAATCACATGAGTTTCAAACTTGAATTTGGATTTGATTAATAATCAGTTTTAT
CTTTTCTCCCACCTTCAGAAGAATAAAACAAACAAATATAGGCATTCTACTATCGTTAGAATTTT
CTGAAAGGTAACTATCTCGATTTCATATATAAATTTATATAGATA
Found at i:46190 original size:27 final size:26
Alignment explanation
Indices: 46155--46228 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
46145 TAACAAATTA
46155 AAATA-TAAAAATAATA-AAAATATAAC
1 AAATACTAAAAATAATATAAAA-A-AAC
* *
46181 AAATACTAAAAACAAATATTAAAAAAC
1 AAATACTAAAAA-TAATATAAAAAAAC
46208 AAATACTAAATAATAATATAA
1 AAATACTAAA-AATAATATAA
46229 TAAATAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 5 0.12
27 25 0.62
28 7 0.17
29 3 0.08
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (26 bp):
AAATACTAAAAATAATATAAAAAAAC
Left flanking sequence: Indices 45655 -- 46154
CTATTATGACATAGCCGCGGGGCGCTCAAGGGACCTTTCTGGGCTTTGAATTGATGCAAAAACAA
TTTTTTGCGCAACCTAATATTCCTATCTTAATGAAAAGTTCCTAGATGGGGTTTCTTTATGTTTT
ACATAGAACATATTACTATTACTCTTACTCTATTCCAAATCAGATTATAAGTCATTAGTCATTCC
TAAGAGACACCTCACTATCTATATTTAAGCATTCAAAAGGTATCTTTTATTCATTTTAATAACAG
AAAAATAACAGAAAAGAAAAATATAAAATATAGAATAAAATTAAAATATAGAAAATATCTATTCT
CTATTGTCTGTATTTGTGTCGTATATCGTTTATTCCTATGAAATCTCAGATGAAAAGAAACAATT
TTAGAAGGAGTATAATGAACTTCATAAAATTCGTTGATCGGTTCTTCCCACAGAAATGATCCATT
TTATTTGACTGATGGGGACAATAAACAATTAATTATAACAAATTA
Right flanking sequence: Indices 46229 -- 46728
TAAATAAAAAAAAAGAGAGTCTTCCTATCTTATTCGAAACGCCTTGTAATCTTCAACCAATTCTG
CGCTTCAATATAATTTCCAGGAGTAAGCGCTAGAGCTTGTTTCCAATATTCAGCGGCTTGATCGA
ACCACGCCTCCGCAATTTCAGAGTCTCCTTGCCGAATGGCCTGTTCCCCTCGGTCGGAATAGGCG
AGGAATTTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTCCGCAGTTAATT
CTTTGGATGCCCCATTTTTTCTCGAGTTAACCAAAAGAGGGTAATCACATGAGTTTCAAACTTGA
ATTTGGATTTGATTAATAATCAGTTTTATCTTTTCTCCCACCTTCAGAAGAATAAAACAAACAAA
TATAGGCATTCTACTATCGTTAGAATTTTCTGAAAGGTAACTATCTCGATTTCATATATAAATTT
ATATAGATATAGAATCCTTGAAAAAGACCTTTTCTCATAAGAAAG
Found at i:46196 original size:13 final size:13
Alignment explanation
Indices: 46178--46217 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
46168 ATAAAAATAT
46178 AACAAATACTAAA
1 AACAAATACTAAA
*
46191 AACAAATATTAAAA
1 AACAAATACT-AAA
46205 AACAAATACTAAA
1 AACAAATACTAAA
46218 TAATAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (13 bp):
AACAAATACTAAA
Left flanking sequence: Indices 45678 -- 46177
GCTCAAGGGACCTTTCTGGGCTTTGAATTGATGCAAAAACAATTTTTTGCGCAACCTAATATTCC
TATCTTAATGAAAAGTTCCTAGATGGGGTTTCTTTATGTTTTACATAGAACATATTACTATTACT
CTTACTCTATTCCAAATCAGATTATAAGTCATTAGTCATTCCTAAGAGACACCTCACTATCTATA
TTTAAGCATTCAAAAGGTATCTTTTATTCATTTTAATAACAGAAAAATAACAGAAAAGAAAAATA
TAAAATATAGAATAAAATTAAAATATAGAAAATATCTATTCTCTATTGTCTGTATTTGTGTCGTA
TATCGTTTATTCCTATGAAATCTCAGATGAAAAGAAACAATTTTAGAAGGAGTATAATGAACTTC
ATAAAATTCGTTGATCGGTTCTTCCCACAGAAATGATCCATTTTATTTGACTGATGGGGACAATA
AACAATTAATTATAACAAATTAAAATATAAAAATAATAAAAATAT
Right flanking sequence: Indices 46218 -- 46717
TAATAATATAATAAATAAAAAAAAAGAGAGTCTTCCTATCTTATTCGAAACGCCTTGTAATCTTC
AACCAATTCTGCGCTTCAATATAATTTCCAGGAGTAAGCGCTAGAGCTTGTTTCCAATATTCAGC
GGCTTGATCGAACCACGCCTCCGCAATTTCAGAGTCTCCTTGCCGAATGGCCTGTTCCCCTCGGT
CGGAATAGGCGAGGAATTTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTC
CGCAGTTAATTCTTTGGATGCCCCATTTTTTCTCGAGTTAACCAAAAGAGGGTAATCACATGAGT
TTCAAACTTGAATTTGGATTTGATTAATAATCAGTTTTATCTTTTCTCCCACCTTCAGAAGAATA
AAACAAACAAATATAGGCATTCTACTATCGTTAGAATTTTCTGAAAGGTAACTATCTCGATTTCA
TATATAAATTTATATAGATATAGAATCCTTGAAAAAGACCTTTTC
Found at i:46207 original size:14 final size:14
Alignment explanation
Indices: 46178--46217 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
46168 ATAAAAATAT
46178 AACAAATACT-AAA
1 AACAAATACTAAAA
*
46191 AACAAATATTAAAA
1 AACAAATACTAAAA
46205 AACAAATACTAAA
1 AACAAATACTAAA
46218 TAATAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (14 bp):
AACAAATACTAAAA
Left flanking sequence: Indices 45678 -- 46177
GCTCAAGGGACCTTTCTGGGCTTTGAATTGATGCAAAAACAATTTTTTGCGCAACCTAATATTCC
TATCTTAATGAAAAGTTCCTAGATGGGGTTTCTTTATGTTTTACATAGAACATATTACTATTACT
CTTACTCTATTCCAAATCAGATTATAAGTCATTAGTCATTCCTAAGAGACACCTCACTATCTATA
TTTAAGCATTCAAAAGGTATCTTTTATTCATTTTAATAACAGAAAAATAACAGAAAAGAAAAATA
TAAAATATAGAATAAAATTAAAATATAGAAAATATCTATTCTCTATTGTCTGTATTTGTGTCGTA
TATCGTTTATTCCTATGAAATCTCAGATGAAAAGAAACAATTTTAGAAGGAGTATAATGAACTTC
ATAAAATTCGTTGATCGGTTCTTCCCACAGAAATGATCCATTTTATTTGACTGATGGGGACAATA
AACAATTAATTATAACAAATTAAAATATAAAAATAATAAAAATAT
Right flanking sequence: Indices 46218 -- 46717
TAATAATATAATAAATAAAAAAAAAGAGAGTCTTCCTATCTTATTCGAAACGCCTTGTAATCTTC
AACCAATTCTGCGCTTCAATATAATTTCCAGGAGTAAGCGCTAGAGCTTGTTTCCAATATTCAGC
GGCTTGATCGAACCACGCCTCCGCAATTTCAGAGTCTCCTTGCCGAATGGCCTGTTCCCCTCGGT
CGGAATAGGCGAGGAATTTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTC
CGCAGTTAATTCTTTGGATGCCCCATTTTTTCTCGAGTTAACCAAAAGAGGGTAATCACATGAGT
TTCAAACTTGAATTTGGATTTGATTAATAATCAGTTTTATCTTTTCTCCCACCTTCAGAAGAATA
AAACAAACAAATATAGGCATTCTACTATCGTTAGAATTTTCTGAAAGGTAACTATCTCGATTTCA
TATATAAATTTATATAGATATAGAATCCTTGAAAAAGACCTTTTC
Found at i:49070 original size:14 final size:14
Alignment explanation
Indices: 49051--49077 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49041 CCCCCCTTGT
49051 TTGTTATTTTAGTC
1 TTGTTATTTTAGTC
49065 TTGTTATTTTAGT
1 TTGTTATTTTAGT
49078 TAGGTTTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.15, T:0.67
Consensus pattern (14 bp):
TTGTTATTTTAGTC
Left flanking sequence: Indices 48551 -- 49050
AGAATTGATTATCCGTAGTGTACCTATCCAACAATCTAATAGGAATGACTCGCGATTCACTAGGT
TTCGGGGCCATAATCATTATGTAGGAGAGATGGCCGAGTGGTTCAAGGCGTAGCATTGGAACTGC
TATGTAGGCTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTACCTTTACCTAAATTATCA
ACTTTACTAACCGCAATATATCAAATCACATAACAATAAATACTCTTATTCTAACAGCTAGACCT
TTACTTGATATAGATTTTCTATTCCTAATTTCTGCGGTACAGAAAATAAAATACTGGAAAGAATG
AACAAGGAATGAGAATATCCCTATCATTCTATGATATATGAAGGGGAAAAAACAAAAAATATATT
ATATGAAGGGGAAAAAATCCGTCAATTAACCCATTACTTTGGGTCTCTTTACTTATTACACTTAT
TACTTAGGCGACAGGGGACAAAATTGTCCGAACCCCCCCCCTTGT
Right flanking sequence: Indices 49078 -- 49577
TAGGTTTAAGTCTGACGAGAATAATATTCTACGACTAGCAATTCATTTATTTTCAAGCCGACCCA
TTTACTATCTATTATTTGATTGACCAATCCTTTATATTGGAATGGGTGAAGAGTCAAATGGTTTG
GCAATTCCTCCTGGGGAAATGAATCAAGATAATTTTGGATCAAAGTTCTAGATTTTTGTTCATCC
CTTGCTGTAATAATATCTCGGGGTTTACAGCGATAACTTGGTATATCTACTATACGACCATTAAC
TAAAATATGCCTGTGGTTAACTAATTGGCGGGCTCGAGGAATAGTTGACGCCATACCCAATCTAA
AAAGGATGTTATCTAAACGCATTTCAAGTAATTGTAGTAAAACTTGACCTGTCGATCCTTTGGCT
TTTGCGGCAATACGAACGTATTTAAGTAATTGTCGTTCTGTAAGACCATAATGAAAACGCAATTT
TTGTTTTTCTTCTAAACGAATACGATATTGAGATTTTTTACCGGA
Found at i:50785 original size:20 final size:20
Alignment explanation
Indices: 50760--50801 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
50750 AAAAGTTTAT
50760 AAAGACAGAATAAAAGAAAA
1 AAAGACAGAATAAAAGAAAA
50780 AAAGACAGAATAAAAGAAAA
1 AAAGACAGAATAAAAGAAAA
50800 AA
1 AA
50802 GGGATAGGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.76, C:0.05, G:0.14, T:0.05
Consensus pattern (20 bp):
AAAGACAGAATAAAAGAAAA
Left flanking sequence: Indices 50260 -- 50759
AAAAGGAATTGACCGTTCGAGTATTCCAAATTGTCCGAGAAAAATGAGAGCAAGAGAGACATATA
TAATACATGTGGTATATATACATCTATATTGAATTGCGGATACAGAAATGATAGAATCGTTTCTG
ATTATACCAAATATGAGTCTCCGATAGAGATGAAAGAAGATAGACAAGAAATAATAAAGAAGAGG
AAACCTTTTTATAGGAATCAGTTATTAGGAATCAGTATTTAATAACTTCAATAGTTCCAGTAGAA
TATGAATATAAAAGAAAGAAACAAAAGAAAAAAAAAAGAGAATGGCATAATAAGATTTTAATCTC
AAAACACAAAGCAAAGGGGATATGGCGAAATTGGTAGACGCTACGGACTTAATTGGATTGAGCCT
TGGTATGGAAACTTACTAAGTGATAACTTTCAAATTCAGAGAAACCCTGGAATAAAATAATGGGT
AATCCTGAGCCAAATCCTGTTTTACGAAAACAAACAAAAGTTTAT
Right flanking sequence: Indices 50802 -- 51301
GGGATAGGTGCAGAGACTCAATGGAAGTTGTTCTAACAAATGGAGTTGGCTGTCTTTCATTAGTA
AAGTAAAAGTAAAGGAATCCTTCTGTCAAAAAAAAAAAAAAAATGCCAGAAAAGAGAAAATAAAG
GAAAACCCTATATACATACGTATACGTATTGAAATAATATCTCAAATGATTAATGATAACCCGAA
TTTTTCTTTTTTTGGATATTGGATATTTATCTAAAAAAGGAAATAAAATAAAAATAATTGTTTTG
AATCGATTCCAAGTTGAAGAAAGGATCGAATATTACTTAATCAAATCAATCACTCCATAGTCTGA
TAGATAATTGACTCACTCCATAGTCTGATAGATAATTGATTAATCGGACGAGAATAAAGATAGAG
TCCCATTATTGTACATGTCAATATCGACAACAAGGAAATTGATAGTAAGAGGAAAATCCGTCGAC
TTTTGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAATAAAA
Found at i:51151 original size:28 final size:28
Alignment explanation
Indices: 51111--51165 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
51101 ATCAAATCAA
51111 TCACTCCATAGTCTGATAGATAATTGAC
1 TCACTCCATAGTCTGATAGATAATTGAC
51139 TCACTCCATAGTCTGATAGATAATTGA
1 TCACTCCATAGTCTGATAGATAATTGA
51166 TTAATCGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (28 bp):
TCACTCCATAGTCTGATAGATAATTGAC
Left flanking sequence: Indices 50611 -- 51110
GAAATTGGTAGACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATAA
CTTTCAAATTCAGAGAAACCCTGGAATAAAATAATGGGTAATCCTGAGCCAAATCCTGTTTTACG
AAAACAAACAAAAGTTTATAAAGACAGAATAAAAGAAAAAAAGACAGAATAAAAGAAAAAAGGGA
TAGGTGCAGAGACTCAATGGAAGTTGTTCTAACAAATGGAGTTGGCTGTCTTTCATTAGTAAAGT
AAAAGTAAAGGAATCCTTCTGTCAAAAAAAAAAAAAAAATGCCAGAAAAGAGAAAATAAAGGAAA
ACCCTATATACATACGTATACGTATTGAAATAATATCTCAAATGATTAATGATAACCCGAATTTT
TCTTTTTTTGGATATTGGATATTTATCTAAAAAAGGAAATAAAATAAAAATAATTGTTTTGAATC
GATTCCAAGTTGAAGAAAGGATCGAATATTACTTAATCAAATCAA
Right flanking sequence: Indices 51166 -- 51665
TTAATCGGACGAGAATAAAGATAGAGTCCCATTATTGTACATGTCAATATCGACAACAAGGAAAT
TGATAGTAAGAGGAAAATCCGTCGACTTTTGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAA
ATAAAAAAGGGGCTCGTTCGACTCCCTAATTTGTTATTATATTCTCTCTTTTCGTTAACGGTTCA
CAATTCGTTATCTTTCTTTTCTCATCCATTCGATTCTTTCACAAACGTATCCGGGCTGAATTTTT
TTTTTATTTTCACAAGTCTTGTGATAGATATGAGACACATACAAATAAACATTTTTGAGCAAAAC
AAAAGATAGAAAACATTCCAAGTCCTTAATAGGATTTTCGAAGACTTTGTCGTCTTTTTTTTTAA
TTGACATAGACCCAAGTCCTTTAGTAAAATGAAAAAGATGACGCGTTGGGAATGGTCGGGATAGC
TCAGCTGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAGTTC
Found at i:51713 original size:20 final size:20
Alignment explanation
Indices: 51688--51728 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
51678 TGGCACATGA
51688 TTAATTTGTGTATGAGTATC
1 TTAATTTGTGTATGAGTATC
51708 TTAATTTGTGTATGAGTATC
1 TTAATTTGTGTATGAGTATC
51728 T
1 T
51729 ATTCTACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.20, T:0.51
Consensus pattern (20 bp):
TTAATTTGTGTATGAGTATC
Left flanking sequence: Indices 51188 -- 51687
AGAGTCCCATTATTGTACATGTCAATATCGACAACAAGGAAATTGATAGTAAGAGGAAAATCCGT
CGACTTTTGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAATAAAAAAGGGGCTCGTTCGAC
TCCCTAATTTGTTATTATATTCTCTCTTTTCGTTAACGGTTCACAATTCGTTATCTTTCTTTTCT
CATCCATTCGATTCTTTCACAAACGTATCCGGGCTGAATTTTTTTTTTATTTTCACAAGTCTTGT
GATAGATATGAGACACATACAAATAAACATTTTTGAGCAAAACAAAAGATAGAAAACATTCCAAG
TCCTTAATAGGATTTTCGAAGACTTTGTCGTCTTTTTTTTTAATTGACATAGACCCAAGTCCTTT
AGTAAAATGAAAAAGATGACGCGTTGGGAATGGTCGGGATAGCTCAGCTGGTAGAGCAGAGGACT
GAAAATCCTCGTGTCACCAGTTCAAATCTGGTTCCTGGCACATGA
Right flanking sequence: Indices 51729 -- 52228
ATTCTACAACTTAATTAAATGATATAGATCAACATATATATTCATGAATACTAATATAGTATAAA
TCATGATACATAATTATGCATTTAGGTGTCTGGAGATATAGTCTTTTTTTTTTTTTGAGTAAAGA
GTATATGTTATAAAGTATGTAAAAGAAAAAAATTAGAATATCTTTCCTCTTCTTTTATTATTTGT
TCACAATATGTTTCCTTGCGGTCAAAAAGAATGTTAATACTTCATATAAATTCGAAAAGTTAAAT
GAATTGGTTATTACATGAATTGTTTAAAAGATTAAAAACTCTAGTCTAAAGGAATTGCAGGGTAG
GAATATCCAAAATTTATCTTAGATACAGTACAAATAGAATTCGACCCTCTTTTATTTCTTTGTAT
TTTCTTTCATATTCTATTTTTTCATTCCCTCCTATGTAATTTTATATAGTTCATCTAAGGGTTCT
ACGCGGTAGAAAGTTCATGATGCCAAACCCATTTAGTTCAGCCTA
Found at i:52335 original size:12 final size:12
Alignment explanation
Indices: 52318--52353 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
52308 TCTAATTGTA
52318 TTGTCTTTTTTT
1 TTGTCTTTTTTT
52330 TTGTCTTTTTTT
1 TTGTCTTTTTTT
52342 TT-TCTTTTTTT
1 TTGTCTTTTTTT
52353 T
1 T
52354 AGTTTATCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (12 bp):
TTGTCTTTTTTT
Left flanking sequence: Indices 51818 -- 52317
GGTGTCTGGAGATATAGTCTTTTTTTTTTTTTGAGTAAAGAGTATATGTTATAAAGTATGTAAAA
GAAAAAAATTAGAATATCTTTCCTCTTCTTTTATTATTTGTTCACAATATGTTTCCTTGCGGTCA
AAAAGAATGTTAATACTTCATATAAATTCGAAAAGTTAAATGAATTGGTTATTACATGAATTGTT
TAAAAGATTAAAAACTCTAGTCTAAAGGAATTGCAGGGTAGGAATATCCAAAATTTATCTTAGAT
ACAGTACAAATAGAATTCGACCCTCTTTTATTTCTTTGTATTTTCTTTCATATTCTATTTTTTCA
TTCCCTCCTATGTAATTTTATATAGTTCATCTAAGGGTTCTACGCGGTAGAAAGTTCATGATGCC
AAACCCATTTAGTTCAGCCTATTTCTATATTCCTATTATATTAGTTTTAGTTCAGCTTGTCCTAA
ATAAATATCTTCTAAATTTGAGAATCCAACGAATCTCTAATTGTA
Right flanking sequence: Indices 52354 -- 52853
AGTTTATCCATATTTATAATAATATGAATGAGACTTAAATAACTCTCTTGATCTATAAGAGAACG
CACTCCTTGAATATCGGGAGTTGTAGCATCAAGGATTCGTTTTTTATTATTCAATGAGCATCTTG
TATTTCATAAAAATTGGGAGCAATATAATCCTTACGCAAGGGCCACCCTATCCAACTTTCCGGCA
TTAAGATACGTTTCAGACACGGATGATTATCATAAGAGATTCCCAACATATCATAAGATTCCCTT
TCTTGAAAATCCGAACTTTTCCAAACCCAGAAAACGGACGGGATTCTAGGATTCCTCCTTAGGAC
AAATACTTTTATACATACTTCTTCTGGTTGGTCTATACCATACTCTATTCTCGTAAGATGATATA
CACTAGCTAACAGCCCGCCCGGTGCTACATCATAGGCACATTGGGAACGCAAATAATTGTAACCA
TATACATATAAAATGACAGCAATGGAATGCCAATCCTCAGGCTTT
Found at i:52340 original size:11 final size:11
Alignment explanation
Indices: 52318--52353 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
52308 TCTAATTGTA
52318 TTGTCTTTTTTT
1 TTGTC-TTTTTT
52330 TTGTCTTTTTT
1 TTGTCTTTTTT
*
52341 TTTTCTTTTTT
1 TTGTCTTTTTT
52352 TT
1 TT
52354 AGTTTATCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (11 bp):
TTGTCTTTTTT
Left flanking sequence: Indices 51818 -- 52317
GGTGTCTGGAGATATAGTCTTTTTTTTTTTTTGAGTAAAGAGTATATGTTATAAAGTATGTAAAA
GAAAAAAATTAGAATATCTTTCCTCTTCTTTTATTATTTGTTCACAATATGTTTCCTTGCGGTCA
AAAAGAATGTTAATACTTCATATAAATTCGAAAAGTTAAATGAATTGGTTATTACATGAATTGTT
TAAAAGATTAAAAACTCTAGTCTAAAGGAATTGCAGGGTAGGAATATCCAAAATTTATCTTAGAT
ACAGTACAAATAGAATTCGACCCTCTTTTATTTCTTTGTATTTTCTTTCATATTCTATTTTTTCA
TTCCCTCCTATGTAATTTTATATAGTTCATCTAAGGGTTCTACGCGGTAGAAAGTTCATGATGCC
AAACCCATTTAGTTCAGCCTATTTCTATATTCCTATTATATTAGTTTTAGTTCAGCTTGTCCTAA
ATAAATATCTTCTAAATTTGAGAATCCAACGAATCTCTAATTGTA
Right flanking sequence: Indices 52354 -- 52853
AGTTTATCCATATTTATAATAATATGAATGAGACTTAAATAACTCTCTTGATCTATAAGAGAACG
CACTCCTTGAATATCGGGAGTTGTAGCATCAAGGATTCGTTTTTTATTATTCAATGAGCATCTTG
TATTTCATAAAAATTGGGAGCAATATAATCCTTACGCAAGGGCCACCCTATCCAACTTTCCGGCA
TTAAGATACGTTTCAGACACGGATGATTATCATAAGAGATTCCCAACATATCATAAGATTCCCTT
TCTTGAAAATCCGAACTTTTCCAAACCCAGAAAACGGACGGGATTCTAGGATTCCTCCTTAGGAC
AAATACTTTTATACATACTTCTTCTGGTTGGTCTATACCATACTCTATTCTCGTAAGATGATATA
CACTAGCTAACAGCCCGCCCGGTGCTACATCATAGGCACATTGGGAACGCAAATAATTGTAACCA
TATACATATAAAATGACAGCAATGGAATGCCAATCCTCAGGCTTT
Found at i:54340 original size:39 final size:39
Alignment explanation
Indices: 54297--54377 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 39
54287 AGAATTTTTT
*
54297 TTTATTATTATAC-CTTATATACTAC-TTTATTTTATTATA
1 TTTATTA-TATACACTT-TATACTACTTTTACTTTATTATA
*
54336 TTTATTATATACTACTTTATACTACTTTTACTTTATTTTA
1 TTTATTATATAC-ACTTTATACTACTTTTACTTTATTATA
54376 TT
1 TT
54378 ACTTTATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
38 5 0.14
39 15 0.41
40 17 0.46
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.60
Consensus pattern (39 bp):
TTTATTATATACACTTTATACTACTTTTACTTTATTATA
Left flanking sequence: Indices 53797 -- 54296
TCGTAATATTCAAATTCAAGAGCTAAGACCATTCTAATGCTCCTTTTCGCCATGCATAAACTGAA
CCAACAATTAGGATAAGCACGAAAATTAAAGCTTCTATAAATACAGATACCCCCAATACATCGAA
ACTCATTGCCCAGGGATAAAGAAAAACCGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACA
TATAATAACGGATTCGAAATTGTAACCAAGCATCGCCCATTGGTTCTATGCCCGATTCATAACTC
GAAAGTTTCTCGGGCCCTTTGTTAATCGGGGATAAAACTCCGGAAATTATAAATGCCAAAATAGG
AATAATGCTTGATATTATCAGAAATGCCCAGAAAATATCATATTCGTAAAGCAGAAACATAGGTG
CACTCCTATGAATGTGAAAAATATAATAGAAAATATACTAGATTAGTCGAGTTGAATTGAAATTA
ATTGTCAACTCATCCATAACTGTTTAGTCAAAACAAGAATTTTTT
Right flanking sequence: Indices 54378 -- 54877
ACTTTATTTTATATTATATTTTTTTTTATGTTTATAACTAGAGTTTACAATTCTAATCATCAAAT
AGAATCATCAAAGGAGAGAGACTCCTTTCTTTTATATATTATATATGGTTTCTTATTAATTTAAA
ATGGAATGGAGGAAAAAGCCAGATGTCGGAGAATGTCTAGGAATTTTCATCTTACAATTTAAAGT
TAGAGTATAATGTGGTGTTGGTATATTCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAA
TAATATTATATCGATAAAATAATAAAATCTTTTTATTTTATTGATTATTATTTTAGAATCTATAA
ATAATATTATATCGATAAAATAATAAAATAAATCTATAAAAAAAAAAGAACTCTATAAAATAATA
ATATAAAACAATAATAAATTATATTAAGTTCTATTAAGTTCTATTAAGTTATATAGAATTAGATA
TTAATATCTTAATATGGATTAATATATAGATTAATATGGGCTTAT
Found at i:54351 original size:29 final size:29
Alignment explanation
Indices: 54311--54398 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
54301 TTATTATACC
54311 TTATATACTACTTTATTTTATTATATTTA
1 TTATATACTACTTTATTTTATTATATTTA
** *
54340 TTATATACTACTTTATACTACTTTTACTTTA
1 TTATATACTACTTTATTTTA-TTATA-TTTA
*
54371 TT-T-TATTACTTTATTTTATATTATATTT
1 TTATATACTACTTTA-TTT-TATTATATTT
54399 TTTTTTATGT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 30 0.62
30 10 0.21
31 8 0.17
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (29 bp):
TTATATACTACTTTATTTTATTATATTTA
Left flanking sequence: Indices 53811 -- 54310
TTCAAGAGCTAAGACCATTCTAATGCTCCTTTTCGCCATGCATAAACTGAACCAACAATTAGGAT
AAGCACGAAAATTAAAGCTTCTATAAATACAGATACCCCCAATACATCGAAACTCATTGCCCAGG
GATAAAGAAAAACCGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACATATAATAACGGATT
CGAAATTGTAACCAAGCATCGCCCATTGGTTCTATGCCCGATTCATAACTCGAAAGTTTCTCGGG
CCCTTTGTTAATCGGGGATAAAACTCCGGAAATTATAAATGCCAAAATAGGAATAATGCTTGATA
TTATCAGAAATGCCCAGAAAATATCATATTCGTAAAGCAGAAACATAGGTGCACTCCTATGAATG
TGAAAAATATAATAGAAAATATACTAGATTAGTCGAGTTGAATTGAAATTAATTGTCAACTCATC
CATAACTGTTTAGTCAAAACAAGAATTTTTTTTTATTATTATACC
Right flanking sequence: Indices 54399 -- 54898
TTTTTTATGTTTATAACTAGAGTTTACAATTCTAATCATCAAATAGAATCATCAAAGGAGAGAGA
CTCCTTTCTTTTATATATTATATATGGTTTCTTATTAATTTAAAATGGAATGGAGGAAAAAGCCA
GATGTCGGAGAATGTCTAGGAATTTTCATCTTACAATTTAAAGTTAGAGTATAATGTGGTGTTGG
TATATTCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAATA
ATAAAATCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAATAATATTATATCGATAAAAT
AATAAAATAAATCTATAAAAAAAAAAGAACTCTATAAAATAATAATATAAAACAATAATAAATTA
TATTAAGTTCTATTAAGTTCTATTAAGTTATATAGAATTAGATATTAATATCTTAATATGGATTA
ATATATAGATTAATATGGGCTTATATTGATTGAATAGGGCAATAG
Found at i:54376 original size:36 final size:38
Alignment explanation
Indices: 54296--54378 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 38
54286 AAGAATTTTT
**
54296 TTTTATTATTATACCTTATATACTACTTTATTTTATTA
1 TTTTATTATTATACCTTATATACTACTTTATACTATTA
54334 TATTTATTA-TATACTACTT-TATACTACTTT-TACT-TTA
1 T-TTTATTATTATAC--CTTATATACTACTTTATACTATTA
54371 TTTTATTA
1 TTTTATTA
54379 CTTTATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
36 7 0.17
37 4 0.10
38 8 0.20
39 18 0.45
40 3 0.08
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (38 bp):
TTTTATTATTATACCTTATATACTACTTTATACTATTA
Left flanking sequence: Indices 53796 -- 54295
GTCGTAATATTCAAATTCAAGAGCTAAGACCATTCTAATGCTCCTTTTCGCCATGCATAAACTGA
ACCAACAATTAGGATAAGCACGAAAATTAAAGCTTCTATAAATACAGATACCCCCAATACATCGA
AACTCATTGCCCAGGGATAAAGAAAAACCGTTTCAACATCAAAAACAACAAAAACTAGAGCAAAC
ATATAATAACGGATTCGAAATTGTAACCAAGCATCGCCCATTGGTTCTATGCCCGATTCATAACT
CGAAAGTTTCTCGGGCCCTTTGTTAATCGGGGATAAAACTCCGGAAATTATAAATGCCAAAATAG
GAATAATGCTTGATATTATCAGAAATGCCCAGAAAATATCATATTCGTAAAGCAGAAACATAGGT
GCACTCCTATGAATGTGAAAAATATAATAGAAAATATACTAGATTAGTCGAGTTGAATTGAAATT
AATTGTCAACTCATCCATAACTGTTTAGTCAAAACAAGAATTTTT
Right flanking sequence: Indices 54379 -- 54878
CTTTATTTTATATTATATTTTTTTTTATGTTTATAACTAGAGTTTACAATTCTAATCATCAAATA
GAATCATCAAAGGAGAGAGACTCCTTTCTTTTATATATTATATATGGTTTCTTATTAATTTAAAA
TGGAATGGAGGAAAAAGCCAGATGTCGGAGAATGTCTAGGAATTTTCATCTTACAATTTAAAGTT
AGAGTATAATGTGGTGTTGGTATATTCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAAT
AATATTATATCGATAAAATAATAAAATCTTTTTATTTTATTGATTATTATTTTAGAATCTATAAA
TAATATTATATCGATAAAATAATAAAATAAATCTATAAAAAAAAAAGAACTCTATAAAATAATAA
TATAAAACAATAATAAATTATATTAAGTTCTATTAAGTTCTATTAAGTTATATAGAATTAGATAT
TAATATCTTAATATGGATTAATATATAGATTAATATGGGCTTATA
Done.