123.fas.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NC_060346

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 563202
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:83514 original size:127 final size:127

Alignment explanation


    Indices: 83353--83607  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

      83343 AAGAAATTAA

                                                                             
      83353 GAAATTATATGTAAGAACCATAGCATTTCGTGATTAATTGGCAAATCTACTTTGATTCTCTAGGA
          1 GAAATTATATGTAAGAACCATAGCATTTCGTGATTAATTGGCAAATCTACTTTGATTCTCTAGGA

                                                                          
      83418 ACCAATAATGTGGGACTGTTAAGATGGTTAAAGCAAACCGTTTGAAGTCTAGATGCGGCATG
         66 ACCAATAATGTGGGACTGTTAAGATGGTTAAAGCAAACCGTTTGAAGTCTAGATGCGGCATG

                                                                             
      83480 GAAATTATATGTAAGAACCATAGCATTTCGTGATTAATTGGCAAATCTACTTTGATTCTCTAGGA
          1 GAAATTATATGTAAGAACCATAGCATTTCGTGATTAATTGGCAAATCTACTTTGATTCTCTAGGA

                                                                          
      83545 ACCAATAATGTGGGACTGTTAAGATGGTTAAAGCAAACCGTTTGAAGTCTAGATGCGGCATG
         66 ACCAATAATGTGGGACTGTTAAGATGGTTAAAGCAAACCGTTTGAAGTCTAGATGCGGCATG

             
      83607 G
          1 G

      83608 TACTCTTTCT


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31


Consensus pattern (127 bp):   
GAAATTATATGTAAGAACCATAGCATTTCGTGATTAATTGGCAAATCTACTTTGATTCTCTAGGA
ACCAATAATGTGGGACTGTTAAGATGGTTAAAGCAAACCGTTTGAAGTCTAGATGCGGCATG

Left flanking sequence: Indices 82853 -- 83352
TAAGGGCTGCGGTGGTCTTAGTTAGTTTCATTTTCTTCTTTCAAAAGCATTCTTTTGGGTCTCGT
ACATACATAAAATCTTTAATCTTAGTCCTAGGAAAAATTCATTCAAGCCAATTCGATTCGCTCGG
GAACAATCACATTGGAAACTTCTCTACTCGAACTCGATTTTGAATCCCTAATCTAATAAACAATT
CAAAAAAAAAAGCTTTAATCCAAATATAGTACAATTATAGAAGAATATAAACAAGGATAAAAAGC
TGAATCAAGGAATAAAGGAGTAGAAAATACTTATAACTTATAATAGTCCAAATTACATAACATAA
TAATAATAATAAAAGAATATATACTATAAAAAAAACGCACTTGGATATAGAAAGAACCATGCTTA
CACTAAATCACATCATTAAGGACCCATGACTCGTCTCATTCTGGACCTTTTTCCTTTATAACTAG
GAAAGAGAGGTGCATGATCTCGCGAATTACTTCTGAAGAAATTAA


Right flanking sequence: Indices 83608 -- 84107
TACTCTTTCTACCACTATGTTAATATAGTGATGGTTTTCAAATGAATATTTTATCGATATAGAAC
ACTCATCTCGATAAAATGATTTGAACCACTTATTCTAAAATGGGCATTTTCCCTCTTTTATCCAA
TGCTGAATCGACGACCTATGTCTTATGTATAAGTCAGAAGAATTTTTTGGATTTGAAGTGAAGAA
AAAAAAGAAACAACTTTGCTGACAATTACATATTTTTTATTTTGTCAGAAGAGTCCTCCGAGTAT
TTTGGTTTTGCATTAGATTAAGTTTTTTTTAATATGAATAAAGAAGAGAGGATAGGCTCATTACA
TTCATAAAAAAAAATATGAGAATTTACGCTAAGTAATTGAGCGTGAGAGCCAAATGAATCGAAAG
ATTCATGTTTGGTTCGGGAAGGGATTATGGAAGTTTTGAAATGAATGGAAAGATAATCTACTTTC
ATTAAGTGATTTATTAGATAATCGAAAACAGAGGATCTTGAATAC



Found at i:86855 original size:127 final size:127

Alignment explanation


    Indices: 86700--86956  Score: 514
    Period size: 127  Copynumber: 2.0  Consensus size: 127

      86690 ATAACAATCT

                                                                             
      86700 TTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAGGATCTTAAGGAAAAGGATTTTGTTTCCACC
          1 TTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAGGATCTTAAGGAAAAGGATTTTGTTTCCACC

                                                                          
      86765 GAGCTAAAACAATATGTCGATGTCTCTAGTAAACCAAAGTCATCGTTTAATAGCTATTTTGC
         66 GAGCTAAAACAATATGTCGATGTCTCTAGTAAACCAAAGTCATCGTTTAATAGCTATTTTGC

                                                                             
      86827 TTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAGGATCTTAAGGAAAAGGATTTTGTTTCCACC
          1 TTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAGGATCTTAAGGAAAAGGATTTTGTTTCCACC

                                                                          
      86892 GAGCTAAAACAATATGTCGATGTCTCTAGTAAACCAAAGTCATCGTTTAATAGCTATTTTGC
         66 GAGCTAAAACAATATGTCGATGTCTCTAGTAAACCAAAGTCATCGTTTAATAGCTATTTTGC

               
      86954 TTC
          1 TTC

      86957 CATTTCTTTC


Statistics
Matches: 130,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  130  1.00

ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38


Consensus pattern (127 bp):   
TTCTAGTTACTTCGTTCTCTATTTCTATTTGAGAGGATCTTAAGGAAAAGGATTTTGTTTCCACC
GAGCTAAAACAATATGTCGATGTCTCTAGTAAACCAAAGTCATCGTTTAATAGCTATTTTGC

Left flanking sequence: Indices 86200 -- 86699
TGAACCTATACCAAAGGTTTAGAAGACCTCTGTCCTATCCATTAGACAATGGACGCTGTTCATTC
CGATTTTTTCGTATTTTGACTTTTCTACCTCTTGTTTAAAAAAAAAATCGGATTGTATGTGAGAA
ATTTTTTGGAATTGTATATTCAATGATTCACTAATTCTAATTAGAGTATATTCTAGAATATAATA
TATAATTCGAATCGAATATTTAGAAAAAGGATATAAGCGGGTAGCGGGAATCGAACCCGCATCGT
TAGCTTGGAAGGCTAGGGGTTATAGTCGACGTCGATTCAGCATTTTGAACGTCTCTAATTCAAAA
CCGAACATGAAACTTTGGTTTCATTCGGCTCCTTTATGGAAGATGAGTAAATTCCTAGATCTAAG
ATGTGAACAAAATTCTACCCATAACACCTATGTCAGCTTTTTGTCTGAATACAGACAAAACGAAT
CGCTTTCTAGATGATCCTTCTAGAAGAAGGTGATTATAACAATCT


Right flanking sequence: Indices 86957 -- 87456
CATTTCTTTCTCTACTAATCAAAAATGGAACATTTAGTTACGATTAGAAATCTACTTTCAGGAAT
TCCTTCTTTCCTTTGAAGGAACTGTTCTAGTGTTGAAAACCAAAGGATAAAGAGAAAATAGAGCT
AGTTGTGAACCAGAAGAAATTCCTGTAGTTGAATAGGCCTCGTTCGATAAGTTCAATCCTTTCAA
TATGTTCTCTTTGCTTAGTCCGGCATTCCCAATCTCTTTCTTTTCCTTTTTTAAGGAGAAGTACC
ACTATTGCTTCCTTATCCGTAGGCGAGAAAAGGTAGTCGCTCTGCTTGCCTGACTAGCTGAATAC
CTTGCTTCGCCATTAGCTAGGGTGAGGGACTATCCGCAACTTGAAAGCCGAAAGCAGCAAGGCAA
GAAGGAAAGAGATTGACACAACCTTCTCCCTTTGGCCGAAAACGGAAGACAGATATTCATACAAC
CTTTTCCCTTGGCTAGCTGAGGCTAGCAAAGTCACTGAACGGATA



Found at i:125075 original size:20 final size:20

Alignment explanation


    Indices: 125046--125084  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

     125036 CCGTTGATGT

                 *    *         
     125046 ATAGAGATGGGTGCGCTTCA
          1 ATAGAAATGGATGCGCTTCA

                               
     125066 ATAGAAATGGATGCGCTTC
          1 ATAGAAATGGATGCGCTTC

     125085 CCACTAATTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26


Consensus pattern (20 bp):   
ATAGAAATGGATGCGCTTCA

Left flanking sequence: Indices 124546 -- 125045
TGGGATGAAATTCCATATGATTAGTGGACCGATAGCCTCACGTTCCTCTTATTGATGGACGAATA
GGAATTTCCCCTTTCTTCTTTTGGTCGTTTCCAAGTCTTGTGACTGTCAGTTACTCGGAAAGGAA
AGTAGGCCCACGGAATCGCTCTTCTTAGGTATTTTCTGATCCATGGGTCGCATTAAAAACGAGAT
CGATGGAGCTTTCTTCTATTATTCCTCTCGCTACGATGACGGTATTGAAATAACAAGAACCCTGG
CGGTACCAAAACTGACGCTAAGACTTTCCGGGATAGTATTAGGATCTCCTTGTCCTCGGTTGTGT
TCCAAGCTGCTTTCACTCCGCTAAGAGATATGGGGGATACTCGTCGCTGAACGCCAACCCAATCT
GGTCTTTCGTTGAAAATCTCTTTGATAAAGTGCGAGTTCGGTGGCACTGAGACAGATGACGATCC
TGGTACTACATAATGAGAGAATCTTTGCACCAAACCCGTTGATGT


Right flanking sequence: Indices 125085 -- 125584
CCACTAATTCTGTCTTGAGCCTTGAATGAACTACATTCGATTCCTTTGCGGAACCTGTGTCCACC
CTTGAAGCCTAAATTCAGTGGTTTTTGAGCGTATTGGTTCCTCTCGGGACTTGGTCTGCAACGAT
TTCCTCTGTTTCGGGGCGTACTTCTACTCTCGACCTTCTCTTCGGCCGTGTTCTAAGCTGCTTCC
ATTCACTAAGAAAGGAGAAGGCCTATTGCGTGATTCGTCCGGTTGAACCTCCTTCTTCAGTCGGG
AGGCAGACCAGAAGAGAAGTATGTCTCAGCAGTCTAAAAAGCGTATCGATGTTTCAAGCACCGGG
TCATTCTTCTTTATATTATATTGTTCCAGTTCCGAGGCAGTCGCATCAAAATGAGGCTGCAACAA
AAAAAAACTATCAGTGATTGGGCCATTCGCTCCTCGAAGGAGGGGGATCTTGTGTGGTTCAAGGT
CTTCTCGCTTCCCTCTCTTTAATTTAAGGTTATTTCGGATTCCGG



Found at i:141780 original size:127 final size:127

Alignment explanation


    Indices: 141554--141808  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     141544 CCTTCAATTC

                                                                             
     141554 TCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCT
          1 TCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCT

                                                                          
     141619 GAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT
         66 GAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT

                                                                             
     141681 TCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCT
          1 TCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCT

                                                                          
     141746 GAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT
         66 GAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT

             
     141808 T
          1 T

     141809 GTGCTCAGCC


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25


Consensus pattern (127 bp):   
TCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCGCT
GAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGT

Left flanking sequence: Indices 141054 -- 141553
CCGAGACCTCTACTGATAGGAGTTCTTCCTTCTCACTTGGCAAGCTTATTCTCCCTCTTCTGGGC
GGCTACTTGCTCTTTTTCAAATTGCTAAGACTATGAGCTAAACCGACTGAAAATGAAAAGTGCTT
ATTTCGATTTATTCATCGGTCTTGCTTCTTTCGCTCCTGAGCTGCATTGACATTGCCTGATTACC
GGCTTTCAGCTTGAAGTTCACTTCTTTCAGTTTCAGACTTAGTCTAGCTATGAACCCACCTACTT
TGTAAAGCTTCTCCTGATTCAGTTTGTGACCCCCAACCTTCGCCAGATTATGTTGAGCTGGTAAC
GTACCCGGTTGAGCAACTCTCCTTTTAGCTTTAGTCGGTCGAGTAGCTAGGAAGAAGTGTAACGA
ACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCTACGA
TATTCTAAGTTTCTTCCTCTTGACCGAATCTCTAACCTTCAATTC


Right flanking sequence: Indices 141809 -- 142308
GTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAG
AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAA
TATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTA
ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCCCCGTTGTATAACCATT
CATCAACGGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATA
ATGGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATC
AATATCTACTGGAGGAGCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATG
GCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACA



Found at i:142315 original size:127 final size:127

Alignment explanation


    Indices: 142089--142343  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     142079 TGCCGCTTCC

                                                                             
     142089 CAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT
          1 CAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT

                                                                          
     142154 GTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG
         66 GTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG

                                                                             
     142216 CAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT
          1 CAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT

                                                                          
     142281 GTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG
         66 GTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG

             
     142343 C
          1 C

     142344 TACAATGAAG


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.37, C:0.17, G:0.24, T:0.23


Consensus pattern (127 bp):   
CAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT
GTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAG

Left flanking sequence: Indices 141589 -- 142088
AGAAGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTA
ACATGTGAAATGGGTGCATAAGGATGTTCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGA
AGTTACCAAGGAACCATGCATAGCGCTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACA
TGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCA
GAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGC
GGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAGACGGAAAC
TAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCA
TAAGGACCCCCGTTGTATAACCATTCATCAACGGATGCCGCTTCC


Right flanking sequence: Indices 142344 -- 142843
TACAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAA
ACCATCCAATGTAAAGACGCTTTTATACAATTCAAAAAAGAAGAAAAAAACTATGTTTTAAATAA
GTCTACCTAGCCGTATTCTACTACCAATTTGATTTGACTCTTTCCTTCATTGTTGATGAGAATGA
AGCCACCTGAGAAAGGGGTAAATACTCCTCCCCTAACAGCACGTTCTAAAGTTGGCGGAAGAAGA
TTGAATTTCTTTATGAATATATCGTTCAAAACCTCACAATAAGACTGTTCTTTTTCTTCATAATC
AAAAATGGGAATTAATATTTCATTTTGATAGCGTGCATATTTCAGTTTAGGCAATCGTTCTTCAA
TTTCCCGATCAATATCGTCCATATAGATATTGAATAGTACTTCAGCTATGAAAGGAATAGGAGGA
ACGCCAGTATTTATCGAGAAGTCCCTGTCCATATTATCAACAATG



Found at i:143451 original size:21 final size:21

Alignment explanation


    Indices: 143427--143472  Score: 83
    Period size: 21  Copynumber: 2.2  Consensus size: 21

     143417 GGATCAAATA

                                 
     143427 TCATGCTTACCATTTTCATAT
          1 TCATGCTTACCATTTTCATAT

                             *   
     143448 TCATGCTTACCATTTTCTTAT
          1 TCATGCTTACCATTTTCATAT

                
     143469 TCAT
          1 TCAT

     143473 ATTTTTATAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.22, C:0.24, G:0.04, T:0.50


Consensus pattern (21 bp):   
TCATGCTTACCATTTTCATAT

Left flanking sequence: Indices 142927 -- 143426
GAACTTTAATTCAGAATTGGAACAATTTAGTATAAGAAGAGTTTTAATATCCCTATACTCTTGAA
TGGTATCGAGGTAATGGGTTATTGTTCTATCTTTAGAATAAGAACTATAGCACGATTTACTAAAA
TAGGAAGATTGGCCAAACTCTTTGATTAAGATACCAGCAAGTGCCCCAATAACAACTTCGTCAGC
TAGAGAGGCTTCGACTTCGACGGGTAAGGCTGGGATCAAATTCGACCCGGGGGATTCACTATATG
TGCGAACAAGTCTAAGTGAGGAAAAGTTGTAATTTCCTGATAGAACCAAGTTTTGAATATTAAGA
ATATCACCTTCCGAAAGTTCATAGTCGCGATTATTATGCTTATAGACAGCGTAAACATCATTTAT
TTCAAATGCCAAACTATGAAGAGAACATTTTGGAACATCACCCCCCGGCCTACCATCAGTATATG
ATCTATACGTTACACGGAAATGCATATTAGAACCAGGATCAAATA


Right flanking sequence: Indices 143473 -- 143972
ATTTTTATATATACTCCATACTGCGAAACGGACTCTGTAAGTGCAATAGATATAATAATCGTTGC
AACCATTAATGACACAGTTTTTATCTTACCGCTTTGTTTATTATCTATTTGGAGTGGGTCAAAGG
AATTTAGCGGAAAGAGATCTCTAGCTGTTTTATTGAGGGGCTCCCCGCATTCGCATGGGCTACTC
ACTCCAAGGTGGGTGCTACAAACGTGGTCAACATAAGTATCGTTAATCAAATCTATTAAGATTTT
TAAATTGGGTGAGCTAAGTGCTAATGGTTTTAGCAAAAGGGGTTCGGGTGCTATGAACCCCCATA
TTGTGAAACCAAATAAGATAGAAAGAAAGATAACAAAGCGAGTATCTTTGTAATACGATAACAAT
ATTGCATCCGATAGTTTAAAGCTTTTGATTCTCCCCGACTCCCGGCATATATCTGCAAGCCCAAT
TTGCTTCTCCGGTGATCGCATTATCTGATTTCCAGCTATGTTTAT



Found at i:144412 original size:8 final size:8

Alignment explanation


    Indices: 144351--144411  Score: 77
    Period size: 8  Copynumber: 7.6  Consensus size: 8

     144341 TTGTCTGCTC

                  * 
     144351 TGCTTTCA
          1 TGCTTTGA

                  * 
     144359 TGCTTTCA
          1 TGCTTTGA

                  * 
     144367 TGCTTTCA
          1 TGCTTTGA

            *       
     144375 AGCTTTGA
          1 TGCTTTGA

                    
     144383 TGCTTTGA
          1 TGCTTTGA

                    
     144391 TGCTTTGA
          1 TGCTTTGA

                 *  
     144399 TGCTTGGA
          1 TGCTTTGA

                 
     144407 TGCTT
          1 TGCTT

     144412 GAATCTCGAT


Statistics
Matches: 49,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   8   49  1.00

ACGTcount: A:0.13, C:0.18, G:0.21, T:0.48


Consensus pattern (8 bp):   
TGCTTTGA

Left flanking sequence: Indices 143851 -- 144350
TACGATAACAATATTGCATCCGATAGTTTAAAGCTTTTGATTCTCCCCGACTCCCGGCATATATC
TGCAAGCCCAATTTGCTTCTCCGGTGATCGCATTATCTGATTTCCAGCTATGTTTATAGGAATAT
TCTTTTTAGCTGTCAAAGGTGCCCATTTAGCAAAAGTATATTTAGAAGAAATACCATTATGATTA
TATACAACACTCTTTATCCCCGAAGGAGCATGCTGCATAACTAACTTGAGATTCATTATATGCTC
AGAATTCTTATGTAGACTCAAAAGTCTATATAAATTACCACTTATATATTTAAACCAGCATGGTT
CACTCTGAATTGTTGAATTAATAATATGCGTTGGTTGTTCACGTATCTCTGTTTTCTGAGAAGTT
AATTTGAAAAAGATCCTCATCATTGTTTATGTTAATGTTTCTTTTTTGTTTCATATTACATTGGA
TTTTCCTTCGATTCTTTGTTGCTTTCATTTGATTCTTGTCTGCTC


Right flanking sequence: Indices 144412 -- 144911
GAATCTCGATTCTGTCCTATCGATGTTGCTTTTCATTTATCTTCTGTGCCATCGTTTTTGTTAGA
ATTTGATTCTTGTCTGCTAGAAAGTTGCTAGAATTTCGATTCGCTGCAGCTAGAATGAGGTGTCT
CTACCATGGACGCTCCCGTCTCCTTTTATGACTTACCTACAGCTATGAGAGGTTTTCGGTCAGCC
GAGTCCGAATACATACCGCCAGTAGAACGGCATTGAATAGTCCTTACCTTACAGTGAAGGTTAGT
CTATTCGTGGGATTATTTCTCCTAAAGTGCCACAACCCAGCCATAAAAGAACGGAGGCATCCCTC
AAGTTATACTGCAAGTAGTATTACCCGAGAACGACAGCAGTAATACTCTAAAGGGGGAGACAAGG
GTATATGTACTTTTTTATTTACTTCCTCCTTTCTTTAATCCGCAGGAGGTAAAATTCAGGTTGCT
CTTCAAGTTAGTGAAGTTATTTCATTGTAATTAGACCTAACAAGA



Found at i:158906 original size:18 final size:17

Alignment explanation


    Indices: 158875--158908  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

     158865 ATTTTATATC

                     *       
     158875 TAAATAATAGAAAGATA
          1 TAAATAATAAAAAGATA

                             
     158892 TAAATAAATAAAAAGAT
          1 TAAAT-AATAAAAAGAT

     158909 TCGATGTCTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    5  0.33
  18   10  0.67

ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24


Consensus pattern (17 bp):   
TAAATAATAAAAAGATA

Left flanking sequence: Indices 158375 -- 158874
TATTTCACCAAGTAGTGCCAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAA
GTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAACATAGGG
CTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCGGTCTAG
TAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATAGGTTTGTG
CCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCT
TTCTTTCATTCATCAATAGGGCCCTGGTCGGTCACTTTTCTGGGCCGGGATCGATAAGTGGAAGT
CATAAAAAAGAGATCTTTCTCTTCGCACCTCAGATCAAGAGGAAGGGTTTCTTGTCAAGCTGGCC
TATAAATAAAATAAGAATATCTTTCTATTATTATTATTTTATATC


Right flanking sequence: Indices 158909 -- 159408
TCGATGTCTTTTAACCGGCTCTTCTTCTTTGTCAACGCTACTAAGGCGACCGGTTAGGGAGTGCC
TACTTGACTTATGAAAGATAATGAGAATGGGTTATTCAAAAAGGAAAAGGCGCTACTTAGTTTCG
CAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGGCCTGAGGCCCCCTGCGAATCCGTAAATCTGA
GGAGCATGCCGCAACAAAAGGATGGTCCCCTATGCATTTCATTCTTTCCGGAAGGGAAAAAAAAG
GTACCCCCATCATAGTGAACCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCCCAGCCGGGGGG
CGGATCGAATCGGAGTTTCCTTAGGTAGCCACCGACCTACAGTTATCCTTAAACTTCCGTGCTTG
GTGGAGAAGAAGCGAACAAAGGTACGCTCGCTTGCTGTCTTGTTCTCTGTCGCGAACTGGGATCG
CTCGCCAGCTAGGTCAGATTGGAGCAAGAATGGTTGAGAACTTAT



Found at i:191154 original size:127 final size:127

Alignment explanation


    Indices: 190974--191227  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     190964 AACGATTTTG

                                                                             
     190974 ATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTCAAAATATGAAGAAATAGATATGCCTAGCT
          1 ATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTCAAAATATGAAGAAATAGATATGCCTAGCT

                                                                          
     191039 ACTTTTTTCTATGGATAAAAAAAGGATCTAATTGATAGAGGAAGCACCGTAAAGATCAATTA
         66 ACTTTTTTCTATGGATAAAAAAAGGATCTAATTGATAGAGGAAGCACCGTAAAGATCAATTA

                                                                             
     191101 ATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTCAAAATATGAAGAAATAGATATGCCTAGCT
          1 ATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTCAAAATATGAAGAAATAGATATGCCTAGCT

                                                                          
     191166 ACTTTTTTCTATGGATAAAAAAAGGATCTAATTGATAGAGGAAGCACCGTAAAGATCAATTA
         66 ACTTTTTTCTATGGATAAAAAAAGGATCTAATTGATAGAGGAAGCACCGTAAAGATCAATTA

     191228 GCGAGGTTTT


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25


Consensus pattern (127 bp):   
ATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTCAAAATATGAAGAAATAGATATGCCTAGCT
ACTTTTTTCTATGGATAAAAAAAGGATCTAATTGATAGAGGAAGCACCGTAAAGATCAATTA

Left flanking sequence: Indices 190474 -- 190973
CCAAACCTGCCTTACACTCTACTATGAGTAAGGACTAATTCGTGCCTTCAAAGATGACTCTTTGG
CCTTTAGACTCGCTTCGGCGACTTCGCCCTTTAAGTGACAAGGGGGTGAGGCCAGTCGCAGATGG
TATGTTAGTCGGGACAGTCGGTGGAGAGGATGGGCCTACAGAAGTAGGGCAAGTGGGTTCGGATG
CAGAGTAGGACTGATCAGAGTCCGCACCGGAAGGAGAGATTAAGTGAAATCTATTTAAAGAGGCA
AGTCCTATTCCTAAGAACTTGTCTGAGGAGAGTCCTCTGAAGATAATGGCAATGGTCGGTCGGAT
GATTCCAGTAGGGAAATTTGACGAGTATCACATAAATAAGTCGGTGATGATGATGAGGGACATGG
CCGGGCATTGACATGTATCTAAAAATTGAAAAAAAAAAGACCAAAAAATCTGCTAGTAAATACGA
AAAAATAGGCTTTCTACATATGCATCGTCTAAAACAACGATTTTG


Right flanking sequence: Indices 191228 -- 191727
GCGAGGTTTTGGGCCGATACGATAATAACTGCGTACTTATGTCATGATGGTAGATATACCTACTC
ATGATGTGAGATAAAAATTAGGAATCAACTTATGTAATAGAGTCGATCCACTAAAGTCTTGAGCA
GCGGTGTAGGATCAGATCCCAAAGATAGTAAGTCTTTTCTTTCTTAAGAAGGAAAGTCTTTTTCA
AAGATTCTATAGAAATTTATATATGAAACCGAGATAGTTACCTTTCAGAAAATTCTAACGATAGG
AGGAATTTATTCTTCTGAAGGTGGGAAAAAAGATAAAACGAAATAAAACGGATTATTAATCCAAA
TTGAATCCAAATTTCAGTTTAAAACTCAGGTAATGAACCTCTTTGGTTAACCCCCAAAATGGGAT
AGATCCAGCAGAAATCTCATTCGTTAGATATGGTAGATTAAAGGGGGACACCAAATGATTGCTGA
GCCGTATGAGTTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGA



Found at i:192036 original size:127 final size:127

Alignment explanation


    Indices: 191810--192064  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     191800 TTGATCAAGC

                                                                             
     191810 AGCTGAGTATTGGAAACAGGCTATAGCGCTTACTCCTGGTAATTATATTGAAGCACATAATTGGT
          1 AGCTGAGTATTGGAAACAGGCTATAGCGCTTACTCCTGGTAATTATATTGAAGCACATAATTGGT

                                                                          
     191875 TGAAGATCACGGGGCGTTTCGAATAAAAGAAGACGCCGTTTATTTAGTTTATTAATTCTATT
         66 TGAAGATCACGGGGCGTTTCGAATAAAAGAAGACGCCGTTTATTTAGTTTATTAATTCTATT

                                                                             
     191937 AGCTGAGTATTGGAAACAGGCTATAGCGCTTACTCCTGGTAATTATATTGAAGCACATAATTGGT
          1 AGCTGAGTATTGGAAACAGGCTATAGCGCTTACTCCTGGTAATTATATTGAAGCACATAATTGGT

                                                                          
     192002 TGAAGATCACGGGGCGTTTCGAATAAAAGAAGACGCCGTTTATTTAGTTTATTAATTCTATT
         66 TGAAGATCACGGGGCGTTTCGAATAAAAGAAGACGCCGTTTATTTAGTTTATTAATTCTATT

             
     192064 A
          1 A

     192065 TTTATATATA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33


Consensus pattern (127 bp):   
AGCTGAGTATTGGAAACAGGCTATAGCGCTTACTCCTGGTAATTATATTGAAGCACATAATTGGT
TGAAGATCACGGGGCGTTTCGAATAAAAGAAGACGCCGTTTATTTAGTTTATTAATTCTATT

Left flanking sequence: Indices 191310 -- 191809
TTAGGAATCAACTTATGTAATAGAGTCGATCCACTAAAGTCTTGAGCAGCGGTGTAGGATCAGAT
CCCAAAGATAGTAAGTCTTTTCTTTCTTAAGAAGGAAAGTCTTTTTCAAAGATTCTATAGAAATT
TATATATGAAACCGAGATAGTTACCTTTCAGAAAATTCTAACGATAGGAGGAATTTATTCTTCTG
AAGGTGGGAAAAAAGATAAAACGAAATAAAACGGATTATTAATCCAAATTGAATCCAAATTTCAG
TTTAAAACTCAGGTAATGAACCTCTTTGGTTAACCCCCAAAATGGGATAGATCCAGCAGAAATCT
CATTCGTTAGATATGGTAGATTAAAGGGGGACACCAAATGATTGCTGAGCCGTATGAGTTAGGAA
ACTCTCAAGTACGGTTCTAAGGGAAGGAATTAACCTACCTATTCCGACCGGGGAGAACAGGCCAT
TCGCCAGGGAGATTCTGAAATTGCGGAGGCTTGGTTTGATCAAGC


Right flanking sequence: Indices 192065 -- 192564
TTTATATATATTTGTTAGAATTTTTTGTTTGTTGGCCCCATCAGTCAAATAAAAAAATGGATCAT
TCCTTTGCTTTGGGAAGAGCCAATCAAAGAATTTCATTATATCCCTTCTAAGCGTTCTATTTCAT
CTGATATTTCGTAGGGATAAAAAAGGGATAGAGTCAAAAATAGACTTCTTTACTTTTTTATTAAG
AATTTTATTATTAATATGAAAACGAATTCTTTTTTAAAAACCTAAATTGAAATCTAAATTAACAA
CTAAATTAAATATATATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGT
AATTCATATCATCTATGGAAAAGATAAAGCAGCTCTATCTAAGACCTTCTAATTGAGATATGAAT
CTACACTAGGTTATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGTAAT
TCATATCATCTATGGAAAAGATAAAGCAGCTCTATCTAAGACCTT



Found at i:192565 original size:127 final size:127

Alignment explanation


    Indices: 192339--192593  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     192329 ATTAAATATA

                                                                             
     192339 TATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGTAATTCATATCATCT
          1 TATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGTAATTCATATCATCT

                                                                          
     192404 ATGGAAAAGATAAAGCAGCTCTATCTAAGACCTTCTAATTGAGATATGAATCTACACTAGGT
         66 ATGGAAAAGATAAAGCAGCTCTATCTAAGACCTTCTAATTGAGATATGAATCTACACTAGGT

                                                                             
     192466 TATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGTAATTCATATCATCT
          1 TATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGTAATTCATATCATCT

                                                                          
     192531 ATGGAAAAGATAAAGCAGCTCTATCTAAGACCTTCTAATTGAGATATGAATCTACACTAGGT
         66 ATGGAAAAGATAAAGCAGCTCTATCTAAGACCTTCTAATTGAGATATGAATCTACACTAGGT

             
     192593 T
          1 T

     192594 GTACAAAAAA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32


Consensus pattern (127 bp):   
TATACCGGGATGTCTCTTAGTAATGGCTGCTCGCGTGATTTGGAATAGAGTAATTCATATCATCT
ATGGAAAAGATAAAGCAGCTCTATCTAAGACCTTCTAATTGAGATATGAATCTACACTAGGT

Left flanking sequence: Indices 191839 -- 192338
TTACTCCTGGTAATTATATTGAAGCACATAATTGGTTGAAGATCACGGGGCGTTTCGAATAAAAG
AAGACGCCGTTTATTTAGTTTATTAATTCTATTAGCTGAGTATTGGAAACAGGCTATAGCGCTTA
CTCCTGGTAATTATATTGAAGCACATAATTGGTTGAAGATCACGGGGCGTTTCGAATAAAAGAAG
ACGCCGTTTATTTAGTTTATTAATTCTATTATTTATATATATTTGTTAGAATTTTTTGTTTGTTG
GCCCCATCAGTCAAATAAAAAAATGGATCATTCCTTTGCTTTGGGAAGAGCCAATCAAAGAATTT
CATTATATCCCTTCTAAGCGTTCTATTTCATCTGATATTTCGTAGGGATAAAAAAGGGATAGAGT
CAAAAATAGACTTCTTTACTTTTTTATTAAGAATTTTATTATTAATATGAAAACGAATTCTTTTT
TAAAAACCTAAATTGAAATCTAAATTAACAACTAAATTAAATATA


Right flanking sequence: Indices 192594 -- 193093
GTACAAAAAAGTCGTTTTTGCATCAATCCAAAGCTACAAAAAGGTTTTATAAGATTTTATAAGAT
AAAAAAGGTCCGTTGAGCGCCTCATGGCTATGTCATAATAGATCCGAACACTTGCCCCGGATCGA
CTTCCAGATCCTAATTGCTCTAGTGAATAACTAAAGAAAATAGATAAATGGGAGATAGAAGAGAA
ACAAACTAATTATAGAAATATCTCTCAAATCAAAGGTTTACTAATTATTTGACTGTTGGCGGGTC
TCTTTGTATGTGTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAGAAGTC
AAAATTTTGGTGGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCAGACCGGGCCATTT
CTCAAGAACAATAGCTAAAGGACCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTC
ACGATTTCGATAGCCATACCAGTGATTTGGAGGAGATCTCTCGAA



Found at i:195391 original size:127 final size:127

Alignment explanation


    Indices: 195165--195420  Score: 512
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     195155 TTGAAAGGCA

                                                                             
     195165 TTATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATT
          1 TTATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATT

                                                                          
     195230 TGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCT
         66 TGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCT

                                                                             
     195292 TTATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATT
          1 TTATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATT

                                                                          
     195357 TGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCT
         66 TGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCT

              
     195419 TT
          1 TT

     195421 CTCAGAATAT


Statistics
Matches: 129,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  129  1.00

ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32


Consensus pattern (127 bp):   
TTATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATT
TGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCT

Left flanking sequence: Indices 194665 -- 195164
GGACTATTCTGGATGTACAATTCCATTTCGGTAGTAATATTCCATTTCAGTTGGAAAATGCAGTC
AGATGTTTGGGGCAGTATAAGTGATCAAGGGGTAGTAACTCATATCACGGGAGGAAACTTCGCCC
AGAGTTCTATTACTATTAATGGGTGGCTCCGGGATTTCTTATGGGCACAGGCATCCCAGGTAATT
CAGTCTTATGGTTCTTCATTATCTGCATATGGACTTTTTTTCCTAGGTGCTCATTTTGTATGGGC
TTTTAGTTTGATGTTTCTATTCAGCGGACGTGGTTATTGGCAAGAACTTATTGAATCCATCGTTT
GGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCGAGAGCCTTGAGCATTGTACAAGGA
CGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGC
AAGAATTATTGCAGTAGGATAATGGCTAGGAGGATTTGAAAGGCA


Right flanking sequence: Indices 195421 -- 195920
CTCAGAATATTTTTGCTTCTCACTTCGGTCAATTAGCAATAATTTTTCTGTGGACTTCAGGAAAT
CTGTTTCATGTAGCTTGGCAAGGAAATTTTGAATCATGGGTACAGGACCCTTTACATGTAAGACC
TATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCTGGGCGTCCCTTACTCCATTCAT
ACTGAATGGCGGGACGGGAGGAAACAATTTCTCACTCTGTACGAGCTGTGTTCGAATTACGGCTC
CCCCGTCGCCCAAAAAAGCCCTATAGAGATGGGCGGTGTGCAATACCCGCCAATGGAGATTAAAT
GTTTAGGACGACGAAACTGTATAATGAGAAAATGGAGTGGATTTGTTTACCTTCGATTCGAACTT
GATCAATGGATACGGGAAAGACTCAACAAGAAAACTAAGAGTAAGAGCTAATACCTGGCGAATAC
CTGCTCCAACCTCTGAGTTCCAGACTCGAGCCTCCTACTATTGGA



Found at i:261979 original size:127 final size:127

Alignment explanation


    Indices: 261753--262008  Score: 512
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     261743 TTGTCTAGGG

                                                                             
     261753 GATGTAAAAGAGGGCTTTCTCATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTA
          1 GATGTAAAAGAGGGCTTTCTCATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTA

                                                                          
     261818 CGAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTA
         66 CGAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTA

                                                                             
     261880 GATGTAAAAGAGGGCTTTCTCATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTA
          1 GATGTAAAAGAGGGCTTTCTCATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTA

                                                                          
     261945 CGAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTA
         66 CGAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTA

              
     262007 GA
          1 GA

     262009 GGCGGAATCG


Statistics
Matches: 129,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  129  1.00

ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18


Consensus pattern (127 bp):   
GATGTAAAAGAGGGCTTTCTCATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTA
CGAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTA

Left flanking sequence: Indices 261253 -- 261752
CTGGTGCGCGTTGAGCTTTTTTATTCCTTTCCGTCTTTAAACCCACCTCCCGAAATAGGTTTCAT
AATAAGTTGAAAAATAACTAGAATGAACACCATCTGGAGCTATGTCTGAAAGTATATTAATGTAG
GTACGCTTAGCGCTTGGTAGGTCAGGAGCAGAGGTTGTAGTATAGTAGTTCCAAATCCAACTTCT
TCTGAAGCAGGGGATATCCCGTACGCTTGTTTTCAAAAAGTAATGCAATCAAAAAGCATTCTATG
AATGAATTCCTTCATAGCCTTACTTAATAGATAGAGTAGAGAGAAATGGGAGTAAGCCTTTGGTA
TTCTGTTCTTATTGCTTAGTTCCTGTCTATCTCTATCTATCAAAATTTCCCCTCTTTGCTTCTTT
TGTTTGAAATAGGACCGGGCCGGGTATAATCCGGTTGTAAAGAAAGAAACCCCCGGAGTGGTTCA
TCGTCAAAAGAAGGGTTGTAGCATTTCCTATTGATTTGTCTAGGG


Right flanking sequence: Indices 262009 -- 262508
GGCGGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTTG
AACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGAGGC
GGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTTGAAG
TTTTTGGTTTCTTTTTTTTGGGGAGGTTTTTTACTACTTTTTATCTTTCGAACGAAGCACCCCAT
CCTGTATTGGGTCTTCGTTCAATCCTGTTCGTTTTTTATAACCAAACTTTATTGTGGTTTTCCTT
TAGTCATAGGGGAGGGAAGTACTGGGCTTCTTTCTGCAATGTCGCCAGATTCGTTCGGAAACGTT
CCCATTTCCGCTGGACAGTCGTCCCTCGATTCTGCCGAGGACTTCCGTCGCTGTCTGGATTCTCT
AGAGGGGGACGAAAACGAGGTAAACTCAGCGTTGCCTTCCTCCGA



Found at i:262077 original size:127 final size:127

Alignment explanation


    Indices: 261946--262202  Score: 514
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     261936 TGACCACTAC

                                                                             
     261946 GAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGAGG
          1 GAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGAGG

                                                                          
     262011 CGGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTT
         66 CGGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTT

                                                                             
     262073 GAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGAGG
          1 GAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGAGG

                                                                          
     262138 CGGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTT
         66 CGGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTT

               
     262200 GAA
          1 GAA

     262203 GTTTTTGGTT


Statistics
Matches: 130,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  130  1.00

ACGTcount: A:0.39, C:0.14, G:0.32, T:0.16


Consensus pattern (127 bp):   
GAACGAAGGACCAACGACGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGAGG
CGGAATCGAATGATTACGAGATAGACAATGAGACAAAGGAGAGCACTTAGACAATTCACTTT

Left flanking sequence: Indices 261446 -- 261945
CTTCTGAAGCAGGGGATATCCCGTACGCTTGTTTTCAAAAAGTAATGCAATCAAAAAGCATTCTA
TGAATGAATTCCTTCATAGCCTTACTTAATAGATAGAGTAGAGAGAAATGGGAGTAAGCCTTTGG
TATTCTGTTCTTATTGCTTAGTTCCTGTCTATCTCTATCTATCAAAATTTCCCCTCTTTGCTTCT
TTTGTTTGAAATAGGACCGGGCCGGGTATAATCCGGTTGTAAAGAAAGAAACCCCCGGAGTGGTT
CATCGTCAAAAGAAGGGTTGTAGCATTTCCTATTGATTTGTCTAGGGGATGTAAAAGAGGGCTTT
CTCATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTACGAACGAAGGACCAACGA
CGATGAAGGAAGAGAAGGAGGAGGAGTAGGAGCTAGCCTTTGTAGATGTAAAAGAGGGCTTTCTC
ATCTAAAGGCAGGGGGGAGCTTTCTCACTATACAATGACCACTAC


Right flanking sequence: Indices 262203 -- 262702
GTTTTTGGTTTCTTTTTTTTGGGGAGGTTTTTTACTACTTTTTATCTTTCGAACGAAGCACCCCA
TCCTGTATTGGGTCTTCGTTCAATCCTGTTCGTTTTTTATAACCAAACTTTATTGTGGTTTTCCT
TTAGTCATAGGGGAGGGAAGTACTGGGCTTCTTTCTGCAATGTCGCCAGATTCGTTCGGAAACGT
TCCCATTTCCGCTGGACAGTCGTCCCTCGATTCTGCCGAGGACTTCCGTCGCTGTCTGGATTCTC
TAGAGGGGGACGAAAACGAGGTAAACTCAGCGTTGCCTTCCTCCGATCCGGCTGTTAATGCCGAA
GAGGCACCAACCCAGCACGAACAAAAACGGGAAGTCCCTTCTTCCTCTGCGCCTCACCGGGCAGA
AGAAGAAAAAAGGCTCGAAAATAGGATCGAAGCGGTTCTTCACAAACATCTGAAAAAGTTTTGTG
AGCGGAAGAGCGTTGTCGGGGCTTTTCCAGAACTGGATTTTTCCA



Found at i:267862 original size:127 final size:127

Alignment explanation


    Indices: 267636--267890  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     267626 TAATGGGACT

                                                                             
     267636 TGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCA
          1 TGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCA

                                                                          
     267701 CCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGC
         66 CCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGC

                                                                             
     267763 TGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCA
          1 TGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCA

                                                                          
     267828 CCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGC
         66 CCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGC

             
     267890 T
          1 T

     267891 ACTCCCCGAA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.18, C:0.20, G:0.27, T:0.34


Consensus pattern (127 bp):   
TGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCA
CCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGC

Left flanking sequence: Indices 267136 -- 267635
TTTCAATAAGGCTCGCGCAGGGGCGCTCATCTGGCTCCTTTCCGGCCCGGAAGTTCGCTTCTGGC
GACTAGCTCCGCTAGCGCTTGGACTTGGATGGAAGCAAGCTAAAGCTACCTTGAATCAATCAATG
AATGAAAAAAACCGCTTACCTAGAAAGGGAGGACAGGTTGGTTTGAGGACCCGTTGGTCAAAGGA
AAGGGAAGGTCCTGATTCCGGGACGGAGCCGTATGACGCGAGAGTGTCACGTACGGTTCCTTTGA
GAAGGGTGTGATACCACCACCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCATCCCTACTCAC
CTGGTCCATGCACATCGCTCTCTCCAGGAGGTTGGCCGCCTATCCTAGATCTTCCCATTTCCAAG
AAGATCCCCGGCTCGATCTGGTTTAGTATCAAGGTGATTCTGTTTCCGTTCCTATATATATGGGT
CCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACT


Right flanking sequence: Indices 267891 -- 268390
ACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAATCCTTCCTTGCTCG
TTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGCATGGGAAGCGGGCTACT
CCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAATCCTTCCTTGCTCGTTC
CTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGCAATTCTGTAGATCCTTCAGG
TACTTTGGCAGATTACCAAGGTTAGTATAGATATGGATAAGAGTTAGGTTAGTCCAGCTCAGCTG
CTTATGCAATACCGAAGGTGAAACATCTTCAGATGAATGAACTTGATTAGCCACATACTCTCCAT
TTACTGTAATTTCCTCGAACGGTGCCATTTCTCTTACAGAGATCTACTTAACTTTTTTTTGATCT
CTGAACTGGTGAAGAGTTGCTATTATTCTTTTACCATGGAGCCTT



Found at i:268130 original size:127 final size:127

Alignment explanation


    Indices: 267877--268131  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     267867 CTATTGAGTA

                                                                             
     267877 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA
          1 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA

                                                                          
     267942 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC
         66 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC

                                                                             
     268004 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA
          1 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA

                                                                          
     268069 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC
         66 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC

             
     268131 A
          1 A

     268132 ATTCTGTAGA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24


Consensus pattern (127 bp):   
ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA
TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC

Left flanking sequence: Indices 267377 -- 267876
TCACGTACGGTTCCTTTGAGAAGGGTGTGATACCACCACCTATCAGGCCCGACGAGCGGTCCACG
GAGCTGCATCCCTACTCACCTGGTCCATGCACATCGCTCTCTCCAGGAGGTTGGCCGCCTATCCT
AGATCTTCCCATTTCCAAGAAGATCCCCGGCTCGATCTGGTTTAGTATCAAGGTGATTCTGTTTC
CGTTCCTATATATATGGGTCCGTGCAGCATTTCCACGATATCGTTATGATCAATTAATGGGACTT
GGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCAC
CTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGCTGGC
CGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCACCTT
TCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTA


Right flanking sequence: Indices 268132 -- 268631
ATTCTGTAGATCCTTCAGGTACTTTGGCAGATTACCAAGGTTAGTATAGATATGGATAAGAGTTA
GGTTAGTCCAGCTCAGCTGCTTATGCAATACCGAAGGTGAAACATCTTCAGATGAATGAACTTGA
TTAGCCACATACTCTCCATTTACTGTAATTTCCTCGAACGGTGCCATTTCTCTTACAGAGATCTA
CTTAACTTTTTTTTGATCTCTGAACTGGTGAAGAGTTGCTATTATTCTTTTACCATGGAGCCTTA
GCTTCCTGCTTTTTGCTTTTCTTCAGGACATTTCGCACGAGCAGAAGTACCCGATTTTACACACT
CGAATAAGCGTCAGGTAAGCTGCTTTAACTTATAAATTGAATCTAATATCTTTCTTCAAAAAGTC
TTCCTTGAATCACAGAAGTCATTTTTCTTTGAGGAGTGGGTGTGCTAGAGAAGGCTTGTGAAGAA
GTAGGATCTCTGTCTTCTCGTCTTCTCATTCTCATCATCGAAATG



Found at i:278472 original size:127 final size:127

Alignment explanation


    Indices: 278246--278499  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     278236 CTTCAGCCCA

                                                                             
     278246 TATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGGCGGCTTTTT
          1 TATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGGCGGCTTTTT

                                                                          
     278311 GTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCCTGGCCT
         66 GTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCCTGGCCT

                                                                             
     278373 TATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGGCGGCTTTTT
          1 TATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGGCGGCTTTTT

                                                                          
     278438 GTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCCTGGCCT
         66 GTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCCTGGCCT

     278500 CTGATATCCA


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30


Consensus pattern (127 bp):   
TATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGGCGGCTTTTT
GTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCCTGGCCT

Left flanking sequence: Indices 277746 -- 278245
TCGCTTCTGGTGGTTCACCAGCACCTATGACGGATTGCATTAATGAAAATATTTGTCTATCAATT
TCCTCATCGGTGCAAGGAGCTAACTCCTTTTCCCGCATACCGGCAAGATACACTCGAATGTATAT
ACCTGATAGTCTGGATTCATCGTAATCCTCAGCTTTTTGAATTAAGTATTTGATAATAATAGCAC
ATAGACCACTGTTAGGAATAGCATCACCACTCTTATCTACTAAAGAAATAGCATCACCTATTGTA
TAGGTAACCTCTCCTTCTCCTGTAGGTATTTTCATGACATAACCTATGGTAAACTTACCATACTC
AAACACAGTAGAGTAAACATATTTCATTAACAGTCGCATTATAGCCAATGCTATGACTTCAATGT
CTGTACATAGCAGGTATGGCTCTTTAAATCTTACTTCAGCTATTCTCAATCCTAAATAGGGATCC
TTGCATTTTGCCCTCCTGCTGAGAAAGCATTCATTCTTCAGCCCA


Right flanking sequence: Indices 278500 -- 278999
CTGATATCCATATAAAGGACACGACGAGCATAAATACCCTCTTTAACTTCTATTCTAACGGACTG
AATATCTTTTATAAGGAATCGGAAGAATATGCGACGATTTTTTCCAGGAAATCCCCAACGAAAAA
TACACACTATCCCTTCCTTTCTATCGAATCGATCATAACCACTACCTACATTCCAGGAAATTGTG
CACCACAAATAGGAACTAATAAAGAGACCCGCGATCCCGTCCAGGAAATCCCCAACGAAAAATAC
ACACTATCCCTTCCTTTCTATCGAATCGATCATAACCACTACCTACATTCCAGGAAATTGTGCAC
CACAAATAGGAACTAATAAAGAGACCCGCGATCCCGCTCTTTAAAGAAAAAGAAGAAAGACCAGG
CGAACGGGAAATTTTTTAGATAGAAAAGCTATTCCATTTCCGCTGCTCTTGTTCACGAATCCTTT
TCTAGTGGACTTGGCTAGAAAGCCTAAAAAAGAAAGGAAGAAGTT



Found at i:278804 original size:127 final size:127

Alignment explanation


    Indices: 278607--278860  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     278597 GACGATTTTT

                                                                             
     278607 TCCAGGAAATCCCCAACGAAAAATACACACTATCCCTTCCTTTCTATCGAATCGATCATAACCAC
          1 TCCAGGAAATCCCCAACGAAAAATACACACTATCCCTTCCTTTCTATCGAATCGATCATAACCAC

                                                                          
     278672 TACCTACATTCCAGGAAATTGTGCACCACAAATAGGAACTAATAAAGAGACCCGCGATCCCG
         66 TACCTACATTCCAGGAAATTGTGCACCACAAATAGGAACTAATAAAGAGACCCGCGATCCCG

                                                                             
     278734 TCCAGGAAATCCCCAACGAAAAATACACACTATCCCTTCCTTTCTATCGAATCGATCATAACCAC
          1 TCCAGGAAATCCCCAACGAAAAATACACACTATCCCTTCCTTTCTATCGAATCGATCATAACCAC

                                                                          
     278799 TACCTACATTCCAGGAAATTGTGCACCACAAATAGGAACTAATAAAGAGACCCGCGATCCCG
         66 TACCTACATTCCAGGAAATTGTGCACCACAAATAGGAACTAATAAAGAGACCCGCGATCCCG

     278861 CTCTTTAAAG


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.36, C:0.31, G:0.13, T:0.20


Consensus pattern (127 bp):   
TCCAGGAAATCCCCAACGAAAAATACACACTATCCCTTCCTTTCTATCGAATCGATCATAACCAC
TACCTACATTCCAGGAAATTGTGCACCACAAATAGGAACTAATAAAGAGACCCGCGATCCCG

Left flanking sequence: Indices 278107 -- 278606
CATTATAGCCAATGCTATGACTTCAATGTCTGTACATAGCAGGTATGGCTCTTTAAATCTTACTT
CAGCTATTCTCAATCCTAAATAGGGATCCTTGCATTTTGCCCTCCTGCTGAGAAAGCATTCATTC
TTCAGCCCATATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGG
CGGCTTTTTGTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCC
TGGCCTTATTTACATTTCTCAAAAGACTTCAATTGGTACGCGCAAGAAATAGGCCAATTCGGCGG
CTTTTTGTTCAATTTCTCGTGGAGTCAAATTCTCATCAGTACGGGTCAAGGGAATGGCCCCCTGG
CCTCTGATATCCATATAAAGGACACGACGAGCATAAATACCCTCTTTAACTTCTATTCTAACGGA
CTGAATATCTTTTATAAGGAATCGGAAGAATATGCGACGATTTTT


Right flanking sequence: Indices 278861 -- 279360
CTCTTTAAAGAAAAAGAAGAAAGACCAGGCGAACGGGAAATTTTTTAGATAGAAAAGCTATTCCA
TTTCCGCTGCTCTTGTTCACGAATCCTTTTCTAGTGGACTTGGCTAGAAAGCCTAAAAAAGAAAG
GAAGAAGTTGTAACTCGGAATAGAAGCTCTTTTCGCGACTCCGTTGCTAGTGGACTGCTTTCAAG
GGCTAGAATAGAAAGAGGGTCGGAATCCAATCTTTGAAGGCTTGTAAGGGATGCCATTGAATCTG
GTGTCGTAAGTAATCACAGAAACTTCATACCGATATGTTAGATCGAAGACTCTCTACTCCCAAGC
CTCGTGAGGATCTCGCGAATGGGCTTGGCTTGGACGAATGCCCGGAAACCCCTGATCGCCCTGAG
CAGAGAGCAGAGTACTCTCAGCCTCTTTTCTCAGTTTCCGAATGGCACGACCTATCCTTAAAAGG
GAAGGCACTTTCATGAAGAATGCCATGGTCTATCACTTGGGGGTA



Found at i:284495 original size:127 final size:127

Alignment explanation


    Indices: 284269--284522  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     284259 CTATAGAAGA

                                                                             
     284269 TTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATT
          1 TTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATT

                                                                          
     284334 TTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTC
         66 TTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTC

                                                                             
     284396 TTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATT
          1 TTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATT

                                                                          
     284461 TTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTC
         66 TTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTC

     284523 CTATGTTCCT


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31


Consensus pattern (127 bp):   
TTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATT
TTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTC

Left flanking sequence: Indices 283769 -- 284268
TAAGGGAGTGGGGGGTGCTTCTCGAGAAGCAATCGGCTTGGGATGAATATCATAGGTTCTTTTCC
TCTCGCGAGCTTCCTTTCGGAGTTGACGTGCTTCCTTAGCTGCGAGAATTTCTTTTCTCCGGTGC
TGTCTCCTCACTAAGCGCTCTTCTTTTCCTTTCCTCATATCTAAGCTTTTTTTTTTGTGGAATCC
GTTTCCAATTCTGGTTATGGTACGGACAAAGCCCCAGAGGGCCATGACCAAGATCTTCAAGGACA
TGTTGCATAAGACGAAAATGCAGTCAAGAGCCGAGACCCACCTCCGAGCGGTCTTCGAAAGGTTA
CGACAGCACAACCTGAAGATGAACCCGTTAAAGTCTTTCTTTGGGCTGTCTTCGGACAAGTTTCT
TGGATTCATTGTGCGGAAAGACACAAGTCGATCCTGCACTAAAGCCATCCTCGAGATGAAGCCAC
CTCGGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGA


Right flanking sequence: Indices 284523 -- 285022
CTATGTTCCTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTA
TTGATGATATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGAC
GATATCTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTG
ATGATATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGAT
ATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATAT
GATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGATATC
GATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGAT
GCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGC



Found at i:284606 original size:15 final size:17

Alignment explanation


    Indices: 284586--284649  Score: 78
    Period size: 18  Copynumber: 3.8  Consensus size: 17

     284576 AAGGTTTTCT

                             
     284586 TATTGATGATA-T-CAA
          1 TATTGATGATAGTACAA

                            * 
     284601 TATTGATGATAGTGACGA
          1 TATTGATGATAGT-ACAA

                              
     284619 TATTGATGATAGTGACAA
          1 TATTGATGATAGT-ACAA

                    *    
     284637 TATTGATGCTAGT
          1 TATTGATGATAGT

     284650 GACGATATCT


Statistics
Matches: 43,  Mismatches: 3, Indels: 3
        0.88            0.06        0.06

Matches are distributed among these distances:
  15   11  0.26
  16    1  0.02
  18   31  0.72

ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38


Consensus pattern (17 bp):   
TATTGATGATAGTACAA

Left flanking sequence: Indices 284086 -- 284585
AAAGGTTACGACAGCACAACCTGAAGATGAACCCGTTAAAGTCTTTCTTTGGGCTGTCTTCGGAC
AAGTTTCTTGGATTCATTGTGCGGAAAGACACAAGTCGATCCTGCACTAAAGCCATCCTCGAGAT
GAAGCCACCTCGGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCCCAT
CTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGT
TCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCATCTC
ATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCT
ATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTAC
GGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCT


Right flanking sequence: Indices 284650 -- 285149
GACGATATCTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTA
TTGATGATATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGAC
GATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGA
TATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGAT
ATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATAT
GATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTT
GCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGT
CTATTAGTGAACCATCTCTCTGAAAGATGTTCCACTAGAAATATT



Found at i:284621 original size:18 final size:18

Alignment explanation


    Indices: 284600--284657  Score: 98
    Period size: 18  Copynumber: 3.2  Consensus size: 18

     284590 GATGATATCA

                              
     284600 ATATTGATGATAGTGACG
          1 ATATTGATGATAGTGACG

                             *
     284618 ATATTGATGATAGTGACA
          1 ATATTGATGATAGTGACG

                     *        
     284636 ATATTGATGCTAGTGACG
          1 ATATTGATGATAGTGACG

                
     284654 ATAT
          1 ATAT

     284658 CTTTCATTAC


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  18   37  1.00

ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34


Consensus pattern (18 bp):   
ATATTGATGATAGTGACG

Left flanking sequence: Indices 284100 -- 284599
CACAACCTGAAGATGAACCCGTTAAAGTCTTTCTTTGGGCTGTCTTCGGACAAGTTTCTTGGATT
CATTGTGCGGAAAGACACAAGTCGATCCTGCACTAAAGCCATCCTCGAGATGAAGCCACCTCGGA
GAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCCCATCTCATGGAAAACCC
TTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCTATAGGAACTGG
ACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCATCTCATGGAAAACCCTTT
TCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCTATAGGAACTGGACG
ATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACGGTATTTCTGAACA
AGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCA


Right flanking sequence: Indices 284658 -- 285157
CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT
ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATATCGA
TCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGC
CGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGATATCGATCG
TGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGCCGG
AAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATA
TGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTAGT
GAACCATCTCTCTGAAAGATGTTCCACTAGAAATATTCTTGTTAT



Found at i:284644 original size:36 final size:33

Alignment explanation


    Indices: 284586--284657  Score: 108
    Period size: 36  Copynumber: 2.1  Consensus size: 33

     284576 AAGGTTTTCT

                                             
     284586 TATTGATGATATCAATATTGATGATAGTGACGA
          1 TATTGATGATATCAATATTGATGATAGTGACGA

                                      *         
     284619 TATTGATGATAGTGACAATATTGATGCTAGTGACGA
          1 TATTGATGATA-T--CAATATTGATGATAGTGACGA

               
     284655 TAT
          1 TAT

     284658 CTTTCATTAC


Statistics
Matches: 35,  Mismatches: 1, Indels: 3
        0.90            0.03        0.08

Matches are distributed among these distances:
  33   11  0.31
  34    1  0.03
  36   23  0.66

ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36


Consensus pattern (33 bp):   
TATTGATGATATCAATATTGATGATAGTGACGA

Left flanking sequence: Indices 284086 -- 284585
AAAGGTTACGACAGCACAACCTGAAGATGAACCCGTTAAAGTCTTTCTTTGGGCTGTCTTCGGAC
AAGTTTCTTGGATTCATTGTGCGGAAAGACACAAGTCGATCCTGCACTAAAGCCATCCTCGAGAT
GAAGCCACCTCGGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCCCAT
CTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGT
TCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCATCTC
ATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCT
ATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTAC
GGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCT


Right flanking sequence: Indices 284658 -- 285157
CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT
ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATATCGA
TCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGC
CGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGATATCGATCG
TGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGCCGG
AAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATA
TGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTAGT
GAACCATCTCTCTGAAAGATGTTCCACTAGAAATATTCTTGTTAT



Found at i:284693 original size:127 final size:127

Alignment explanation


    Indices: 284531--284785  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     284521 TCCTATGTTC

                                                                             
     284531 CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT
          1 CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT

                                                                          
     284596 ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATAT
         66 ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATAT

                                                                             
     284658 CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT
          1 CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT

                                                                          
     284723 ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATAT
         66 ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATAT

             
     284785 C
          1 C

     284786 GATCGTGACC


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36


Consensus pattern (127 bp):   
CTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGAT
ATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATAT

Left flanking sequence: Indices 284031 -- 284530
TTGCATAAGACGAAAATGCAGTCAAGAGCCGAGACCCACCTCCGAGCGGTCTTCGAAAGGTTACG
ACAGCACAACCTGAAGATGAACCCGTTAAAGTCTTTCTTTGGGCTGTCTTCGGACAAGTTTCTTG
GATTCATTGTGCGGAAAGACACAAGTCGATCCTGCACTAAAGCCATCCTCGAGATGAAGCCACCT
CGGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCCCATCTCATGGAAA
ACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCTATAGGAA
CTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCATCTCATGGAAAACC
CTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCTATAGGAACTG
GACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTC


Right flanking sequence: Indices 284786 -- 285285
GATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGAT
GCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGATATCGAT
CGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGCC
GGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAA
TATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTA
GTGAACCATCTCTCTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCC
CAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAAGATACGAAGGC
TTCTTATTCCACAACAACAAAAGCACTTTTTCACTCTTTCATATA



Found at i:284733 original size:15 final size:17

Alignment explanation


    Indices: 284713--284776  Score: 78
    Period size: 18  Copynumber: 3.8  Consensus size: 17

     284703 AAGGTTTTCT

                             
     284713 TATTGATGATA-T-CAA
          1 TATTGATGATAGTACAA

                            * 
     284728 TATTGATGATAGTGACGA
          1 TATTGATGATAGT-ACAA

                              
     284746 TATTGATGATAGTGACAA
          1 TATTGATGATAGT-ACAA

                    *    
     284764 TATTGATGCTAGT
          1 TATTGATGATAGT

     284777 GACGATATCG


Statistics
Matches: 43,  Mismatches: 3, Indels: 3
        0.88            0.06        0.06

Matches are distributed among these distances:
  15   11  0.26
  16    1  0.02
  18   31  0.72

ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38


Consensus pattern (17 bp):   
TATTGATGATAGTACAA

Left flanking sequence: Indices 284213 -- 284712
GATGAAGCCACCTCGGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCC
CATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATA
GGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCAT
CTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGT
TCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCAT
TACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCAATA
TTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATATCTTTCATTAC
GGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCT


Right flanking sequence: Indices 284777 -- 285276
GACGATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTAT
GGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGAC
GATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGA
TATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTC
CTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTC
GGTCTATTAGTGAACCATCTCTCTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGAC
TCATATTCCCAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAAGA
TACGAAGGCTTCTTATTCCACAACAACAAAAGCACTTTTTCACTC



Found at i:284748 original size:18 final size:18

Alignment explanation


    Indices: 284727--284784  Score: 98
    Period size: 18  Copynumber: 3.2  Consensus size: 18

     284717 GATGATATCA

                              
     284727 ATATTGATGATAGTGACG
          1 ATATTGATGATAGTGACG

                             *
     284745 ATATTGATGATAGTGACA
          1 ATATTGATGATAGTGACG

                     *        
     284763 ATATTGATGCTAGTGACG
          1 ATATTGATGATAGTGACG

                
     284781 ATAT
          1 ATAT

     284785 CGATCGTGAC


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  18   37  1.00

ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34


Consensus pattern (18 bp):   
ATATTGATGATAGTGACG

Left flanking sequence: Indices 284227 -- 284726
GGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCCCATCTCATGGAAAA
CCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCTATAGGAAC
TGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCATCTCATGGAAAACCC
TTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGTTCTATAGGAACTGG
ACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACGGTATTTCTGA
ACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCAATATTGATGATAGTGAC
GATATTGATGATAGTGACAATATTGATGCTAGTGACGATATCTTTCATTACGGTATTTCTGAACA
AGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCA


Right flanking sequence: Indices 284785 -- 285284
CGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGA
TGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGATATCGA
TCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGC
CGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATA
ATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATT
AGTGAACCATCTCTCTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTC
CCAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAAGATACGAAGG
CTTCTTATTCCACAACAACAAAAGCACTTTTTCACTCTTTCATAT



Found at i:284771 original size:36 final size:33

Alignment explanation


    Indices: 284713--284784  Score: 108
    Period size: 36  Copynumber: 2.1  Consensus size: 33

     284703 AAGGTTTTCT

                                             
     284713 TATTGATGATATCAATATTGATGATAGTGACGA
          1 TATTGATGATATCAATATTGATGATAGTGACGA

                                      *         
     284746 TATTGATGATAGTGACAATATTGATGCTAGTGACGA
          1 TATTGATGATA-T--CAATATTGATGATAGTGACGA

               
     284782 TAT
          1 TAT

     284785 CGATCGTGAC


Statistics
Matches: 35,  Mismatches: 1, Indels: 3
        0.90            0.03        0.08

Matches are distributed among these distances:
  33   11  0.31
  34    1  0.03
  36   23  0.66

ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36


Consensus pattern (33 bp):   
TATTGATGATATCAATATTGATGATAGTGACGA

Left flanking sequence: Indices 284213 -- 284712
GATGAAGCCACCTCGGAGAGAAAGGACTTCAAGGACGTCAGCCTACCTATAGAAGATTCATTTCC
CATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATA
GGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCTTCATTTCCCAT
CTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGGGATTTTAGTGATAGGT
TCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCAT
TACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCAATA
TTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGACGATATCTTTCATTAC
GGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCT


Right flanking sequence: Indices 284785 -- 285284
CGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGA
TGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATATTGATGCTAGTGACGATATCGA
TCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGATGAATGCGCTAACTATGGATATGATGC
CGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATA
ATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATT
AGTGAACCATCTCTCTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTC
CCAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACGTGCATTAAGATACGAAGG
CTTCTTATTCCACAACAACAAAAGCACTTTTTCACTCTTTCATAT



Found at i:284893 original size:127 final size:127

Alignment explanation


    Indices: 284762--285018  Score: 514
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     284752 TGATAGTGAC

                                                                             
     284762 AATATTGATGCTAGTGACGATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGAT
          1 AATATTGATGCTAGTGACGATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGAT

                                                                          
     284827 GAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCG
         66 GAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCG

                                                                             
     284889 AATATTGATGCTAGTGACGATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGAT
          1 AATATTGATGCTAGTGACGATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGAT

                                                                          
     284954 GAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCG
         66 GAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCG

               
     285016 AAT
          1 AAT

     285019 TAGCAAAAGC


Statistics
Matches: 130,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  130  1.00

ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Consensus pattern (127 bp):   
AATATTGATGCTAGTGACGATATCGATCGTGACCTTGATACGGAGCTGGAACTGCTAACTATGAT
GAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCG

Left flanking sequence: Indices 284262 -- 284761
TAGAAGATTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAG
GGGGATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAA
ACTCTTCATTTCCCATCTCATGGAAAACCCTTTTCGCTCCGCTTAGCCTTATCCCCCTCTAGGGG
GATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACT
CCTATGTTCCTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTT
ATTGATGATATCAATATTGATGATAGTGACGATATTGATGATAGTGACAATATTGATGCTAGTGA
CGATATCTTTCATTACGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATT
GATGATATCAATATTGATGATAGTGACGATATTGATGATAGTGAC


Right flanking sequence: Indices 285019 -- 285518
TAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAG
TCGAATTACTTATCCCTCGGTCTATTAGTGAACCATCTCTCTGAAAGATGTTCCACTAGAAATAT
TCTTGTTATTGCTTCGACTCATATTCCCAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAAT
TAAATACGTGCATTAAGATACGAAGGCTTCTTATTCCACAACAACAAAAGCACTTTTTCACTCTT
TCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGGTCCATAAC
CATGGGTTCCAATGCACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACAC
AGAAGAAATCAATTATAGACACTAATACAATTAGATCCGCTCTTCATAGACAAACTTGGGATTTG
CGATCCCAGGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTAT



Found at i:287151 original size:127 final size:127

Alignment explanation


    Indices: 286925--287178  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     286915 GCGAACAACC

                                                                             
     286925 AGTTCAGATATTCACGACCAAGAAGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGGA
          1 AGTTCAGATATTCACGACCAAGAAGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGGA

                                                                          
     286990 AGGCTGGAATGCCAACAGGCGTCTATTATTGAATTCACCCGACCCGATAGTACCCATTTTGG
         66 AGGCTGGAATGCCAACAGGCGTCTATTATTGAATTCACCCGACCCGATAGTACCCATTTTGG

                                                                             
     287052 AGTTCAGATATTCACGACCAAGAAGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGGA
          1 AGTTCAGATATTCACGACCAAGAAGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGGA

                                                                          
     287117 AGGCTGGAATGCCAACAGGCGTCTATTATTGAATTCACCCGACCCGATAGTACCCATTTTGG
         66 AGGCTGGAATGCCAACAGGCGTCTATTATTGAATTCACCCGACCCGATAGTACCCATTTTGG

     287179 TTTCGTCCAG


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24


Consensus pattern (127 bp):   
AGTTCAGATATTCACGACCAAGAAGTACTGGATTCTCTTTCGGATAGGCCCTGAAAGGAGAAGGA
AGGCTGGAATGCCAACAGGCGTCTATTATTGAATTCACCCGACCCGATAGTACCCATTTTGG

Left flanking sequence: Indices 286425 -- 286924
TCTATATATAAACGCTGGTTTATCAAGAATACACAAGAAAAGCACTTCGAATTGTTGATTAATCG
TCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATCTTTCCGTTCTAATACTCTATCCG
AGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAG
ACATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGAAAATTGGATTCATGTAACAGGAGAA
AGATTTCCCATTCCTTAGCCGGAAAGATATGTGGCCATGAAAGAGAAAGAGGGATTAAGTAGAAC
AGAATTGACTGGGTGGTAGAGTCGTGGAAACGCTTCTTTCTTCCATATTTTGGACCTTAGCTCCA
TGGAACAATATGTTACTGCTGAAACACGGAAGAATTGAAATCTTAGATCAAAACACTATGTATGG
ATGGTATGAACTGCCCAAACAAGAATTCTTGAACAGCGAACAACC


Right flanking sequence: Indices 287179 -- 287678
TTTCGTCCAGTCATTAATAACTTGATTCTTTTTAGATAATAGTAGATAGAAACAACGCTTGTAAG
GAGTCCTATTAAAACCAAGGAATATAGGCCTGCCTGCCATCCACACCAGAATAAATAGAGTTTTC
CGAAAAAACCTGCTACGGAACTACCGAGAAATACGATAAGTAGATACATTCGAGTGTGATCAGAC
AACCTTTCGCTCCTTGCTCGCGGAGCGGCATACCGAAAAAAAGAAAAGATTGGAAGCGATGACTT
ATGGTTGACTTTCTTGGTTATGTAAAGTGAAAGTAGTTTCGTTTAGTACGAGATCGCTTCACACC
TCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTCCGAGAACTTGTATA
GAGAAGGATTTCCCGCTGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGG
CATAACAACCGGTAGACCATAGGTTGGCCCAACCCAGTCCTCTCG



Found at i:298530 original size:127 final size:127

Alignment explanation


    Indices: 298304--298557  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     298294 GGATGGTAGC

                                                                             
     298304 ATCGGTTGCGGTTGCCGCTCTATCTATTCTCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGAT
          1 ATCGGTTGCGGTTGCCGCTCTATCTATTCTCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGAT

                                                                          
     298369 AGGAATGACAAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCA
         66 AGGAATGACAAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCA

                                                                             
     298431 ATCGGTTGCGGTTGCCGCTCTATCTATTCTCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGAT
          1 ATCGGTTGCGGTTGCCGCTCTATCTATTCTCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGAT

                                                                          
     298496 AGGAATGACAAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCA
         66 AGGAATGACAAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCA

     298558 TAGATCCATT


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28


Consensus pattern (127 bp):   
ATCGGTTGCGGTTGCCGCTCTATCTATTCTCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGAT
AGGAATGACAAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCA

Left flanking sequence: Indices 297804 -- 298303
CTTAACTGACATAGCATTTAAGATTCGCCGACGTCGGGAAATAGAAAATCAGTCTTACCTGTCCT
ATCAAGAAGAAGGTACGAAAGGACGGCATACTCTGTCCCTTAGTGAAAGCGTGAAAGCTCAATCT
CTAAGTGTGAAACTATCCTCCTCTTTTTGAGCTAAACCTATTGCTCGCCCCTTAGTGACTCCTTT
CTACAATTGAATTGATCCTTAGACCCTCCGTAAACTGCATGGTCTAGGTCAGATGCAAGATCAAG
ACCCTGATGCGCAACTGATTGTAAAAACCCGGGATTTTTGATTAAAAAAGAGCGATTTAAGCATT
CACAAACTATAATGAGGACTTCCTTACTCAACTAGAATAGAGAGAGTAAAGCTACCATCCCAGAG
GTAAGATTGAAGACCTCTCTTTCCTCTTCACTTCACTAGCTGCCCTATTCGCTTAGCTACTTGCC
TCAGGTATTCCCACAACAGCGGATAAAACTACAGCGGATGGTAGC


Right flanking sequence: Indices 298558 -- 299057
TAGATCCATTTTTGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAG
CTATTAGGAAAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCATAG
ATCCATTTTTGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAGCTA
TTAGGAACATAGAGCTACCTGAATCAAAGTTCTACTTGCTTATCTATCTTGAGCAACTGGACGAG
AGGACAATTAAAAGAGATAGAGCAAGAAGTTGGGTGAAGCGAGTATCTATCATTAATAGTTCAGT
TCTGAATCCGTATAAAACAAAAGAGATCTGAGCCCGTGGAAGGAGGATTGCTTATCTCACCAGTA
GGCGAACAGAGCTTTCAGGCATCGGGATCAGAGTCTCACCTATGACTAAGCTCCGTGACTAGGTC
CATTGTCATCATCTAAGTTCTTCTTCTTCAAAAAAAGGCTAACCG



Found at i:298636 original size:127 final size:127

Alignment explanation


    Indices: 298505--298759  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     298495 TAGGAATGAC

                                                                             
     298505 AAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCATAGATCCATTTT
          1 AAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCATAGATCCATTTT

                                                                          
     298570 TGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAGCTATTAGGA
         66 TGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAGCTATTAGGA

                                                                             
     298632 AAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCATAGATCCATTTT
          1 AAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCATAGATCCATTTT

                                                                          
     298697 TGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAGCTATTAGGA
         66 TGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAGCTATTAGGA

             
     298759 A
          1 A

     298760 CATAGAGCTA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27


Consensus pattern (127 bp):   
AAGAACAAGAACTACTAGCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCATAGATCCATTTT
TGTACTAATACAAATGCGCACTATCAGGAGCATCTTCCTGCGAGTCTGCCTAGCTATTAGGA

Left flanking sequence: Indices 298005 -- 298504
TTGAATTGATCCTTAGACCCTCCGTAAACTGCATGGTCTAGGTCAGATGCAAGATCAAGACCCTG
ATGCGCAACTGATTGTAAAAACCCGGGATTTTTGATTAAAAAAGAGCGATTTAAGCATTCACAAA
CTATAATGAGGACTTCCTTACTCAACTAGAATAGAGAGAGTAAAGCTACCATCCCAGAGGTAAGA
TTGAAGACCTCTCTTTCCTCTTCACTTCACTAGCTGCCCTATTCGCTTAGCTACTTGCCTCAGGT
ATTCCCACAACAGCGGATAAAACTACAGCGGATGGTAGCATCGGTTGCGGTTGCCGCTCTATCTA
TTCTCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGATAGGAATGACAAGAACAAGAACTACTA
GCTACCCAGCTCTTGGCTTGGTAATGCACTCGGGCAATCGGTTGCGGTTGCCGCTCTATCTATTC
TCTTAGTTCCATAGCCGCGCTTCCTACTAGTCGGATAGGAATGAC


Right flanking sequence: Indices 298760 -- 299259
CATAGAGCTACCTGAATCAAAGTTCTACTTGCTTATCTATCTTGAGCAACTGGACGAGAGGACAA
TTAAAAGAGATAGAGCAAGAAGTTGGGTGAAGCGAGTATCTATCATTAATAGTTCAGTTCTGAAT
CCGTATAAAACAAAAGAGATCTGAGCCCGTGGAAGGAGGATTGCTTATCTCACCAGTAGGCGAAC
AGAGCTTTCAGGCATCGGGATCAGAGTCTCACCTATGACTAAGCTCCGTGACTAGGTCCATTGTC
ATCATCTAAGTTCTTCTTCTTCAAAAAAAGGCTAACCGAACCGCTCGACCATAGGAAAATGAGGA
ACCAATAGGACTGGCCTGAAGTGCCTGCATCTTCCGAGTCATGCCCGGAATGAGTACTTTGCCCT
TGAGATCTATCCAAAGCAAAAGACAGAGGATCGGACTTTTCCCATTCGATTGACACGAGCTCTGT
CTTATAGAAGAGATTGTCAAGATAGTTTCGTGGTACTTTCAAAGA



Found at i:302301 original size:21 final size:21

Alignment explanation


    Indices: 302276--302318  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     302266 GCTCGAGAAC

                     *            
     302276 TCACGAACTGAAGA-GCTCACG
          1 TCACGAACTAAAGATGCT-ACG

                                 
     302297 TCACGAACTAAAGATGCTACG
          1 TCACGAACTAAAGATGCTACG

             
     302318 T
          1 T

     302319 GACGCTTCCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  21   17  0.85
  22    3  0.15

ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19


Consensus pattern (21 bp):   
TCACGAACTAAAGATGCTACG

Left flanking sequence: Indices 301776 -- 302275
GGACAGTTTCACTCAGCTGAGACCCAGAGCTTCTTCTCTTTCATATGCTACATCGGCCACATCCT
TTGAAGAATCCGAAGTAGCGATTCCCTTCCTCGCTCAGGAAAGTAAGAAGGAAAGGCATAAAGCA
AGTACTGCGAACCCCTTTAAGCACGAGATTAGACAGTTGTGATTGCGCTTTCACCCATGATGGGA
TTCTTTGGGCTAGGATGCTAAAGAGATGGCTATGAGAGGGTCTTAGCCTGTAGTAGCTTGACAGT
AGGAAGAGTCTAAAGGCCTAACCGCAGCTATTGAATCAACTATTCTTATTCAAGCTTTCTTGACG
TCTTTCTACGCGGAAAGCTATAGATTCATAGATCGGTCGTTCCAGATGTGATGTTGCAAGCCGCC
GATCAACGCAACCAATATCTGACGCGAGGCCTTTATACGATTACGATAAAGATCGAGTCGATTAG
TCAGCTTTGCCTTGTTGATAGGCTAAAGCATAGCAGCTCGAGAAC


Right flanking sequence: Indices 302319 -- 302818
GACGCTTCCTTCATATGCGGATACAAGGGCCCAGCCCATTATGACTAGTGAAGGCTCCTTTTTTG
TTTGCTTTACTTCCCCCCCCTTATTTTTTTTTCATAAGTGGTCATATTCATCTAGTTTTCTCGCT
TTAGGAGTCTGAACAAATTGAAGAACCTAATGGATCCAACTTATAGAAGGACCCGAACCCGCGTA
TCGCCTTGGTGGAATCTATAAAAGTTATGTCGAATTGCGATATGATTGAGAGGGCCCCTCTTTTA
ATGATGAGTAGGATCACATCACGACAGGGAACAAGCTCTTTGCGCCCCACGTATGGCTTCTACTG
TGATGTTCGATGAATAGTATGCCGAGGGGGCTGCTTGCTGTTTCGATTTCACTCGTTGAAGAATG
TCTTTCCTTTTCAAAACTTGTATCTGGCGGGTTTCTAAACTATACAATCAAAAGTGATAAGGTAA
TATTCGCCTGAAGCGAATGGAGACCTCTCTTTATCCGCCTTCGGG



Found at i:303351 original size:127 final size:127

Alignment explanation


    Indices: 302996--303376  Score: 644
    Period size: 127  Copynumber: 3.0  Consensus size: 127

     302986 TTCAATCTTA

                                                                             
     302996 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
          1 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA

                                                 *      *  *        ***      
     303061 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCCCGA-A-GTAGTTGGTATTTCAATCTT-A
         66 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCT-CCGGAGAGGAAGCT-GT-TTTTTGT-TTGA

             
     303123 -
        127 T

                                                                             
     303123 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
          1 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA

                                                                          
     303188 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT
         66 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT

                                                                             
     303250 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
          1 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA

                                                                          
     303315 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT
         66 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT

     303377 AGAAAGTTCG


Statistics
Matches: 244,  Mismatches: 6, Indels: 8
        0.95            0.02        0.03

Matches are distributed among these distances:
 125    2  0.01
 126    9  0.04
 127  229  0.94
 128    4  0.02

ACGTcount: A:0.31, C:0.15, G:0.12, T:0.41


Consensus pattern (127 bp):   
TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT

Left flanking sequence: Indices 302496 -- 302995
AGGACCCGAACCCGCGTATCGCCTTGGTGGAATCTATAAAAGTTATGTCGAATTGCGATATGATT
GAGAGGGCCCCTCTTTTAATGATGAGTAGGATCACATCACGACAGGGAACAAGCTCTTTGCGCCC
CACGTATGGCTTCTACTGTGATGTTCGATGAATAGTATGCCGAGGGGGCTGCTTGCTGTTTCGAT
TTCACTCGTTGAAGAATGTCTTTCCTTTTCAAAACTTGTATCTGGCGGGTTTCTAAACTATACAA
TCAAAAGTGATAAGGTAATATTCGCCTGAAGCGAATGGAGACCTCTCTTTATCCGCCTTCGGGCT
TTGAAAAAAGGCTTCGTACCATCAATCATATATAGATAGATTGATTGACTCGCGGCTAGTAGTGT
GCGACAAGCAGACCAAACGCCTCCCTTGACCTCCCGGCTGTAAGTCAGCCAGAAAAGAGACTTGC
TTTTTCCCTCCGAGCCCCGCCGAAGTAGTTGGTATTTCAATCTTA


Right flanking sequence: Indices 303377 -- 303876
AGAAAGTTCGCTTCCCCGTGATTTGACTGGTTTCACAGTGGTTCGAATCCCTTTGCCGCTGGAGA
TACGAGACGCTCCTTCTTTCAAATGAAAATACTATGGCCAAGAAAGCCGATTCTTAGAAAGTAAG
ATGGAAGGGTGGTCGTGGATCACTCTATAGGCCGTCCATAGTCCATTAACGCCTCGTAGTACCAC
TTACAGTACTCGCAGAGCGATTGAATCCAATATTTGGACTCAATCTGCTTAACGAGGAAAGAAGC
ATCGTCGTCGAGCTGCCGAGAGAGATCCTCTAGAAGTAAGTCTCTCTACGTAACCCCAATCGGGC
TTACAGCTCTCAACTAACATCCATCTTACCATACCAATCAATCTGATAACAGCTCACCAGAAAAC
CTTCCGGAAAGCCTAACCAGACTGATAAAGACATAGGTTTTTTTCCTGGAGAGAGGGCGACAAGA
ATGTGCCGAAACCAGTGACGATTGGTTTTTGGGTTAATGTTACAA



Found at i:353299 original size:21 final size:21

Alignment explanation


    Indices: 353269--353308  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

     353259 GAGTACCCAT

                                 
     353269 GAAGAGAGTACACAGAATGAA
          1 GAAGAGAGTACACAGAATGAA

                 *     *       
     353290 GAAGATAGTACTCAGAATG
          1 GAAGAGAGTACACAGAATG

     353309 CTAAAAAGAC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.47, C:0.10, G:0.28, T:0.15


Consensus pattern (21 bp):   
GAAGAGAGTACACAGAATGAA

Left flanking sequence: Indices 352769 -- 353268
TGTGGTGTCCATGGTCCATGAGAGTAAATAATCATTCCTTGCCCAATTCTATCAGTACTACTCTG
CTTCTTTCTTCGAACCCAAAGTGGTGGCCTAGCAAGGATTCCTTGATTTCCTATTCGAATCCAAT
GTCGTTCGCTAAGACTACCGTCCGGAGGGAATCTTCGAATAGCAGGTACTTTAGAGGTTAATGTA
TTGAAGATGTTAATCATAGTTTCTTTTTTTATTGTTGTTCATTCGCTCTGCTCGCTGAGCGGCAT
ACCGGAAAAATCAAAGAAGAACAGGCGGAAGATATCGGACTATTAGGATATTACACAATTAGTTG
TGAATATTATTAATAATAGTCTGCTGGATCGCAAACTTGTACATCACAATCATAAATGTCCACAA
AGAGAAATCAATCGAACGGTACACAGGATGAAGAGAAGACAAAATCAACCCTAAATGAAGATGAT
AGTTCCATGAATCAAGATGATAGTACACGTCAAGAGAGTACCCAT


Right flanking sequence: Indices 353309 -- 353808
CTAAAAAGACAATAAACAAATCTATTAAGAAGAAAAGTTGTAATACTAAATCTGAACAGTATAAG
CAAGAAGTCTTCGATATTTTGCATGATTCAAAAAAAAGCCTCCCATTATCAGAAAATGAATTAAA
AAAGATCCAAATGAAGATTGAGGACCTGACTATGTTGTTCGATGAGGAATCTATGTTTAAGACTG
TTCCCAACATAATGAAAATCTTAATAAGGTCAAATCAGGATAATGCAAAAGATTATCTAAGGGGA
AAGTTACTCGAAATGGATGAAATAGAATTGCTTTCAGAGTTCGGTCAATATACTATTGAAGCCTT
AATAGTTCATGTACTAGGAATGCTTTTTAACAATGAAGAATCTAACACAATGATTCGTGTTGCTA
CTTTGGTAGAACAACTAGAGTCTAGTGTCCGGAAACAAGCATTATTTTTGAAATCACGCAGGAGT
AAAAAACCTTTATCTAAGGCCACTGATGGTCTTTCTAATGCGAAG



Found at i:363854 original size:2 final size:2

Alignment explanation


    Indices: 363849--363890  Score: 54
    Period size: 2  Copynumber: 22.5  Consensus size: 2

     363839 ATATAAAATA

                            *                                             
     363849 AT AT AT AT AT AG AT AT -T AT AT AT AT AT -T AT A- AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                
     363888 AT A
          1 AT A

     363891 AGCGGCTGGC


Statistics
Matches: 35,  Mismatches: 2, Indels: 6
        0.81            0.05        0.14

Matches are distributed among these distances:
   1    3  0.09
   2   32  0.91

ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48


Consensus pattern (2 bp):   
AT

Left flanking sequence: Indices 363349 -- 363848
GAACGAGCAAGAACGCTTTGCTCCTGGGGCTCGTCTACACCACATCGACCTAGAGCTTAGGCTTC
TCTTTATGTTTTGGTTCCTTTGATTGATTTATTTGTAAACCTTTCCCCTTCATTCCATCCAGCCT
TACTATTCTTTCAGGGAAACTCCTGAAGTTACGTCTTTCAGTACTGGGACTCAAGTCAAGTAGTT
GAGATAAGCTGTTTGCTCTTTGTCAGATGCCCTTAGTTAAGTTCCTTTTGTCCTATAGGTTCGTT
CTAAAGGTCAGTGGTTCAAGTCAATAAGCGAGGAGGCCCTTCTCACTCAAGCTCAAGCATTTACT
TTTCGAGTTAGAGACCAACGTCTTGGGACTAACGTGGGATCCGCTCAAGGTAGCTTGCTTAGGTA
AATATCTCATGCCTTTCCCGACTGGCCCGACTGGAGAGGTCATTTTTGGAAGAGAAAGTATGCGC
TTTTCAAAAAAGGTCGGAAGAAGGGTTTCAAAAAAATATAAAATA


Right flanking sequence: Indices 363891 -- 364390
AGCGGCTGGCTGCTTTTTATGCAAAAAAAAAGACAAAACGGGATTGGATTTCCACTCATAAGGAA
GGAAGGTTAGATATCTTTGACAGGGTTGTATTTTTGGTTAAAATGGGATGGTGTTCAAACTCCCG
AAATGCAGTCTAGACAGCGGGCCCTCCCCTTTCTGACTGGACTGACTCGGAGAAGGGTCAATCTC
CTCCGGAGCATGCTGCACAGCCACTCATTCGTCCTGACCAGAATCTATCTCTCAGCAATTCTTTT
CTCCGCTAATCACCCCTCTCCTAACGAAGGCAAGGCAAGTGCCACTCCTAGCGCTAAGCATAGAA
AGCTCTCACGCGCGCAATAGACTCTATCAGAGACGGAATCTGTTACCGTTCCCTAACCCAAAGAG
GTTAATCGATGCAACTGCACTGTGTCTTGTGTTTCCTTGAAAGACTAGCTCTTCCTTACTCGTTG
TTTAGCTGGAAGAAGCTGTCCGCTCGTGCTTCTTTCGAGTGAGAT



Found at i:363890 original size:11 final size:11

Alignment explanation


    Indices: 363846--363891  Score: 62
    Period size: 11  Copynumber: 4.4  Consensus size: 11

     363836 AAAATATAAA

                       
     363846 ATAATATATAT
          1 ATAATATATAT

                        
     363857 ATAGATAT-TAT
          1 ATA-ATATATAT

                       
     363868 AT-ATATAT-T
          1 ATAATATATAT

                       
     363877 ATAATATATAT
          1 ATAATATATAT

                
     363888 ATAA
          1 ATAA

     363892 GCGGCTGGCT


Statistics
Matches: 31,  Mismatches: 0, Indels: 8
        0.79            0.00        0.21

Matches are distributed among these distances:
   9    7  0.23
  10    7  0.23
  11   13  0.42
  12    4  0.13

ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46


Consensus pattern (11 bp):   
ATAATATATAT

Left flanking sequence: Indices 363346 -- 363845
AAGGAACGAGCAAGAACGCTTTGCTCCTGGGGCTCGTCTACACCACATCGACCTAGAGCTTAGGC
TTCTCTTTATGTTTTGGTTCCTTTGATTGATTTATTTGTAAACCTTTCCCCTTCATTCCATCCAG
CCTTACTATTCTTTCAGGGAAACTCCTGAAGTTACGTCTTTCAGTACTGGGACTCAAGTCAAGTA
GTTGAGATAAGCTGTTTGCTCTTTGTCAGATGCCCTTAGTTAAGTTCCTTTTGTCCTATAGGTTC
GTTCTAAAGGTCAGTGGTTCAAGTCAATAAGCGAGGAGGCCCTTCTCACTCAAGCTCAAGCATTT
ACTTTTCGAGTTAGAGACCAACGTCTTGGGACTAACGTGGGATCCGCTCAAGGTAGCTTGCTTAG
GTAAATATCTCATGCCTTTCCCGACTGGCCCGACTGGAGAGGTCATTTTTGGAAGAGAAAGTATG
CGCTTTTCAAAAAAGGTCGGAAGAAGGGTTTCAAAAAAATATAAA


Right flanking sequence: Indices 363892 -- 364391
GCGGCTGGCTGCTTTTTATGCAAAAAAAAAGACAAAACGGGATTGGATTTCCACTCATAAGGAAG
GAAGGTTAGATATCTTTGACAGGGTTGTATTTTTGGTTAAAATGGGATGGTGTTCAAACTCCCGA
AATGCAGTCTAGACAGCGGGCCCTCCCCTTTCTGACTGGACTGACTCGGAGAAGGGTCAATCTCC
TCCGGAGCATGCTGCACAGCCACTCATTCGTCCTGACCAGAATCTATCTCTCAGCAATTCTTTTC
TCCGCTAATCACCCCTCTCCTAACGAAGGCAAGGCAAGTGCCACTCCTAGCGCTAAGCATAGAAA
GCTCTCACGCGCGCAATAGACTCTATCAGAGACGGAATCTGTTACCGTTCCCTAACCCAAAGAGG
TTAATCGATGCAACTGCACTGTGTCTTGTGTTTCCTTGAAAGACTAGCTCTTCCTTACTCGTTGT
TTAGCTGGAAGAAGCTGTCCGCTCGTGCTTCTTTCGAGTGAGATG



Found at i:405720 original size:127 final size:127

Alignment explanation


    Indices: 405494--405748  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     405484 GACATAATTG

                                                                             
     405494 ACTGCATTAATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAACCTAAAGGAGCATGAGTCAT
          1 ACTGCATTAATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAACCTAAAGGAGCATGAGTCAT

                                                                          
     405559 ATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCA
         66 ATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCA

                                                                             
     405621 ACTGCATTAATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAACCTAAAGGAGCATGAGTCAT
          1 ACTGCATTAATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAACCTAAAGGAGCATGAGTCAT

                                                                          
     405686 ATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCA
         66 ATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCA

             
     405748 A
          1 A

     405749 TCCATTTGGA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28


Consensus pattern (127 bp):   
ACTGCATTAATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAACCTAAAGGAGCATGAGTCAT
ATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCA

Left flanking sequence: Indices 404994 -- 405493
CGCATCTTATCAGCTACAGACACTGTGATCGCATGCATAGCCCCACCAGACCAAAACAAGATGAA
AATGGCTTCTTACTCGCCACATCCTCCGGTTTACCTTCAGCAATTATCCAACATTCCTGGCCCAT
CAAGAAGAACTTTACCTCTTCACTCCAATTTACATAATTTTCGCCATGTTGGAGTGAATGGCACA
CAATCGACAAGCCAGACATTATTTCCCAATGCAAAAAAAAGGAAGACTTTTTAAGTATAACCTGA
TCCCAATATGTATGATAGAATCAAAGTGATTCTTACTTCAATTCAAGCATTGGATCTCCTGTCTC
ATCTCAATTAAGAGGGGTCATGGAAAGAACAGGTTCAAAATCACGATCAATTCCTTTTTAAAATC
CTGCTGCAGCTGCACGAGCCCTTCCCGCGTGCCACAAATGACCTACGAAGAAAAAGAATCCTAGA
ACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTG


Right flanking sequence: Indices 405749 -- 406248
TCCATTTGGACCTCTTAGAGGTTCTAACCAGGGAGCACGCAGATCCCAAAAACGCATAGTTTCTC
CTCCAAAAATGACTTCTCCGGTTGGGGAACGCATTAGATATTTACCTAAACCTGTAGGTCCTTGC
GCAGATCCTACATTAGCCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGA
AGCTTCTGGTCCAGTAGGTCCGTAAAACTCGCTAGGATAAGCGGTATTATTGAACCAGACAAAAC
AACAAGCAGTGAAACCAAAGATGGATAAAGCCGCTAAACTATAAGATAAGTAAGCCTCCCCAGAC
CATACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGATATGCCAGATTCCACCAAGTAT
ACAAATGGAACCTAACCATACATGTCCTCCGATTATATCTTGATAAGTAAGCCTCCCCAGACCAT
ACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGATATGC



Found at i:406279 original size:127 final size:127

Alignment explanation


    Indices: 406053--406310  Score: 509
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     406043 TAAACTATAA

                                                                             
     406053 GATAAGTAAGCCTCCCCAGACCATACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGAT
          1 GATAAGTAAGCCTCCCCAGACCATACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGAT

                                                                          
     406118 ATGCCAGATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCTCCGATTATATCTT
         66 ATGCCAGATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCTCCGATTATATCTT

                                                                             
     406180 GATAAGTAAGCCTCCCCAGACCATACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGAT
          1 GATAAGTAAGCCTCCCCAGACCATACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGAT

                                                                          
     406245 ATGCCAGATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCTCCGATTATATCTT
         66 ATGCCAGATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCTCCGATTATATCTT

                 
     406307 -ATAA
          1 GATAA

     406311 ATCGTCCACA


Statistics
Matches: 131,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
 126    4  0.03
 127  127  0.97

ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23


Consensus pattern (127 bp):   
GATAAGTAAGCCTCCCCAGACCATACAAGAGCGCGTCGAGCCCATGCGAAGGGTTTGGTTAAGAT
ATGCCAGATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCTCCGATTATATCTT

Left flanking sequence: Indices 405553 -- 406052
AGTCATATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGT
CCAACTGCATTAATCTCGGTAGCTACGCCACCCACAGAATTTAAAGAACCTAAAGGAGCATGAGT
CATATATTCTGCGGAACGCCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCA
ATCCATTTGGACCTCTTAGAGGTTCTAACCAGGGAGCACGCAGATCCCAAAAACGCATAGTTTCT
CCTCCAAAAATGACTTCTCCGGTTGGGGAACGCATTAGATATTTACCTAAACCTGTAGGTCCTTG
CGCAGATCCTACATTAGCCCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAG
AAGCTTCTGGTCCAGTAGGTCCGTAAAACTCGCTAGGATAAGCGGTATTATTGAACCAGACAAAA
CAACAAGCAGTGAAACCAAAGATGGATAAAGCCGCTAAACTATAA


Right flanking sequence: Indices 406311 -- 406810
ATCGTCCACACTAAGAATCCATCCTTCCCCTCCAAAGGGCGATTTTAGTAAATAACCAAATAGAA
TACTTGGGCTAAGGGTCAAGTTGGTAATTTTTCTTACATCTCCCCCTCCCGTATCATATACGCCC
CCAAAATAAAGAGCCTTGAATACTAAAAGCACCTAGACCTAACAAGATTAAGTGAATACCTAAAA
TTGTGGTCATTTTATTTCTATCTTTCCATACATAAACGAAGAATGGAAAAGATTCTTCAAGTGTC
TCAGGTCCCAGAAGTGCATGATAAATACCGCCAAAGCCCAATACTGCAGAGGAAATTAAATGAAG
TACTCCAGATACAAAGTATGGAAAGGTGTCTATAACTTCCCCCCCAGGACCTACCCCCCAACCTA
GAGTAGCTAGATGGGGAAGTCAAATTAATCCTTGTTCATACATAGGCTTCTCTGGTACGAAATGA
GCCACTTCAAATAGGTTCATTGCTCCGGCCCAGAATACGATTAAT



Found at i:406948 original size:127 final size:128

Alignment explanation


    Indices: 406722--406984  Score: 519
    Period size: 127  Copynumber: 2.1  Consensus size: 128

     406712 TGGGGAAGTC

                                                                             
     406722 AAATTAATCCTTGTTCATACATAGGCTTCTCTGGTACGAAATGAGCCACTTCAAATAGGTTCATT
          1 AAATTAATCCTTGTTCATACATAGGCTTCTCTGGTACGAAATGAGCCACTTCAAATAGGTTCATT

                                                                           
     406787 GCTCCGGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCTAGTAGTTTACCGGA-
         66 GCTCCGGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCTAGTAGTTTACCGGAT

                                                                             
     406849 AAATTAATCCTTGTTCATACATAGGCTTCTCTGGTACGAAATGAGCCACTTCAAATAGGTTCATT
          1 AAATTAATCCTTGTTCATACATAGGCTTCTCTGGTACGAAATGAGCCACTTCAAATAGGTTCATT

                                                                           
     406914 GCTCCGGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCTAGTAGTTTACCGGAT
         66 GCTCCGGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCTAGTAGTTTACCGGAT

                    
     406977 AAATTAAT
          1 AAATTAAT

     406985 AAGTCGAGCA


Statistics
Matches: 135,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
 127  127  0.94
 128    8  0.06

ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29


Consensus pattern (128 bp):   
AAATTAATCCTTGTTCATACATAGGCTTCTCTGGTACGAAATGAGCCACTTCAAATAGGTTCATT
GCTCCGGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCTAGTAGTTTACCGGAT

Left flanking sequence: Indices 406222 -- 406721
CATGCGAAGGGTTTGGTTAAGATATGCCAGATTCCACCAAGTATACAAATGGAACCTAACCATAC
ATGTCCTCCGATTATATCTTATAAATCGTCCACACTAAGAATCCATCCTTCCCCTCCAAAGGGCG
ATTTTAGTAAATAACCAAATAGAATACTTGGGCTAAGGGTCAAGTTGGTAATTTTTCTTACATCT
CCCCCTCCCGTATCATATACGCCCCCAAAATAAAGAGCCTTGAATACTAAAAGCACCTAGACCTA
ACAAGATTAAGTGAATACCTAAAATTGTGGTCATTTTATTTCTATCTTTCCATACATAAACGAAG
AATGGAAAAGATTCTTCAAGTGTCTCAGGTCCCAGAAGTGCATGATAAATACCGCCAAAGCCCAA
TACTGCAGAGGAAATTAAATGAAGTACTCCAGATACAAAGTATGGAAAGGTGTCTATAACTTCCC
CCCCAGGACCTACCCCCCAACCTAGAGTAGCTAGATGGGGAAGTC


Right flanking sequence: Indices 406985 -- 407484
AAGTCGAGCATTCCCGGCCCACCAAGCAAAACCGGTGGTTTCTTGGTCACGACCAGTTACAGCTA
AAGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGG
CTGATCTTGAGCTGCCATCCAAGCACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAAAG
TCTCAAATTCAGGATCTTCCGCTGCGCGAATTTCCTGAGAAACGAAGTCATAGGCGCGTAGGTTC
AGGGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAATAACATAAA
GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCGG
TGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGGAATGTATTTGCACCATCA
CCATCTTCAAATAAAGTATTTTCCACGGTAGCACCATGAATAGCG



Found at i:408194 original size:127 final size:127

Alignment explanation


    Indices: 408037--408291  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     408027 TACAAAAACG

                                                                             
     408037 AAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTCGTCTTTGGTAAATTT
          1 AAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTCGTCTTTGGTAAATTT

                                                                          
     408102 ACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAACTACTTCGACCATTTCCGAGCACCTC
         66 ACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAACTACTTCGACCATTTCCGAGCACCTC

                                                                             
     408164 AAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTCGTCTTTGGTAAATTT
          1 AAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTCGTCTTTGGTAAATTT

                                                                          
     408229 ACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAACTACTTCGACCATTTCCGAGCACCTC
         66 ACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAACTACTTCGACCATTTCCGAGCACCTC

             
     408291 A
          1 A

     408292 TAGTATTTTC


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31


Consensus pattern (127 bp):   
AAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTCGTCTTTGGTAAATTT
ACCAAGGGCTATAGTCATAGTGATCCTCCTATTCAACTACTTCGACCATTTCCGAGCACCTC

Left flanking sequence: Indices 407537 -- 408036
TTAGCGTCCAATTATGAAATCCTTGAAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAA
CTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGC
AATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGCTCGAATT
GACGTAACATGAAACCTATTAGTCCGAAAGCGCCATGGAGAGCAACAAAAGCCCACAGACCGCCT
AATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCACAGTAACAATAAAGAATGCGC
TAAACTATTAGCAGGAGTAGAAACTGCGGCCGTTAAGAAATTACAGCCTTCCAAATAGGAACTAG
CCAATCCATGGGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCTCCTAGAGCGAAA
TAGGCACAAGGAAAGAGTAATAGACCGGACCAGCCTACAAAAACG


Right flanking sequence: Indices 408292 -- 408791
TAGTATTTTCGGGGCGTCCGAAGATTCGATCATTTCTCTATGATTTCTCTTGCACTGCCCCTTCC
AATGGGTTTCGAAGATAAAAATCCTTTATTGGCCCATAAACTGACCTAGGGAAATCCATGAACTC
AATTTGATTATTCTTTCTTACTAAGCATATGAACCATGAATTGTCTTCTTATGATTCATCAATCA
GATAGATGAATCCTTTGAAAGAACTTTTCAAGGAACAAGCGATCCCCTCTCTCACTACTAACTGA
TCCTCCGACCTACCCCCCTCTTGTTCGATTAACTAATGTTATTCTTAGATCTTGTTCGTGAGATT
TTTAAAAATAAAGATATTTATAGATTATTCTAATTTCTATGTATACTAAACTATTACAATTACAT
TATTTTTTTAATTTATTTTTTCATTTTCTTTGAGTGTCTTCTTTGTTATATCTCCTTTTCCTTCA
GATAAATCTAAAACTCCAGAGTATATCTTCCCACGGGTCAAAGCA



Found at i:409015 original size:127 final size:127

Alignment explanation


    Indices: 408853--409107  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     408843 GAATTTCCTA

                                                                             
     408853 TTTTTTTCCTTAAAAAAAATGAAAGTCTCTTTCTCGCATCCATTCTCCATCACACTGTCGGAACA
          1 TTTTTTTCCTTAAAAAAAATGAAAGTCTCTTTCTCGCATCCATTCTCCATCACACTGTCGGAACA

                                                                          
     408918 AAAATATCGGATGCAGCGATATAGAAATGTTTGGTACATGAAGCCACGATCTGATAGATATC
         66 AAAATATCGGATGCAGCGATATAGAAATGTTTGGTACATGAAGCCACGATCTGATAGATATC

                                                                             
     408980 TTTTTTTCCTTAAAAAAAATGAAAGTCTCTTTCTCGCATCCATTCTCCATCACACTGTCGGAACA
          1 TTTTTTTCCTTAAAAAAAATGAAAGTCTCTTTCTCGCATCCATTCTCCATCACACTGTCGGAACA

                                                                          
     409045 AAAATATCGGATGCAGCGATATAGAAATGTTTGGTACATGAAGCCACGATCTGATAGATATC
         66 AAAATATCGGATGCAGCGATATAGAAATGTTTGGTACATGAAGCCACGATCTGATAGATATC

             
     409107 T
          1 T

     409108 ATCTAAATAT


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Consensus pattern (127 bp):   
TTTTTTTCCTTAAAAAAAATGAAAGTCTCTTTCTCGCATCCATTCTCCATCACACTGTCGGAACA
AAAATATCGGATGCAGCGATATAGAAATGTTTGGTACATGAAGCCACGATCTGATAGATATC

Left flanking sequence: Indices 408353 -- 408852
TTCCAATGGGTTTCGAAGATAAAAATCCTTTATTGGCCCATAAACTGACCTAGGGAAATCCATGA
ACTCAATTTGATTATTCTTTCTTACTAAGCATATGAACCATGAATTGTCTTCTTATGATTCATCA
ATCAGATAGATGAATCCTTTGAAAGAACTTTTCAAGGAACAAGCGATCCCCTCTCTCACTACTAA
CTGATCCTCCGACCTACCCCCCTCTTGTTCGATTAACTAATGTTATTCTTAGATCTTGTTCGTGA
GATTTTTAAAAATAAAGATATTTATAGATTATTCTAATTTCTATGTATACTAAACTATTACAATT
ACATTATTTTTTTAATTTATTTTTTCATTTTCTTTGAGTGTCTTCTTTGTTATATCTCCTTTTCC
TTCAGATAAATCTAAAACTCCAGAGTATATCTTCCCACGGGTCAAAGCAAAAAAGACACTTCGAA
TATTTTTCTATTGAGTTTAATCTCTTAGAAAGAGAGAATTTCCTA


Right flanking sequence: Indices 409108 -- 409607
ATCTAAATATACTTAGATAGATATAAATTCATCTTGATCTGTAATCAAAGAAAGATAATGGAAAT
GGCTCTTATCTTGTGACTTGGAAGAAAGGTTTCTCTGTAGAGGAAGGGAATAACAATTTATTCCC
ATAGAAAATCTAGGAACAAGAAGATTTAATCGGAAATATCGACAAATTCTTTCGAGGTCCAAAGA
AATGAAATAAAAAAAAAAGGGGGGTCCACTGTTCCAATTCCAATTTCATCTCTATCGAATTTTAA
TATCAGAATAGCGGATATAGTCATAATTCAATAGGTCAGGTCCACTTACTTTTTCTTTTGTTGAT
TTCGAATCTTTCCAATGGATTTGATTGGTATAATGTAAAATAGGGATCTTTGGTGATTCAAGAGG
CGGCTTATCATTATTCATAATAATGAGAATTGACTGAAAAAATGTTCAACTTTCTAACTAGAACT
ACTATACTCTAACTCAGTATAATGATAACGTATTATCCAGTTAGT



Found at i:411098 original size:127 final size:127

Alignment explanation


    Indices: 410872--411128  Score: 514
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     410862 GGGATTGTAG

                                                                             
     410872 TTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGA
          1 TTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGA

                                                                          
     410937 CGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTCAGGGGGCAGAA
         66 CGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTCAGGGGGCAGAA

                                                                             
     410999 TTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGA
          1 TTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGA

                                                                          
     411064 CGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTCAGGGGGCAGAA
         66 CGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTCAGGGGGCAGAA

               
     411126 TTC
          1 TTC

     411129 CATTTCCAAA


Statistics
Matches: 130,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  130  1.00

ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23


Consensus pattern (127 bp):   
TTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGA
CGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTCAGGGGGCAGAA

Left flanking sequence: Indices 410372 -- 410871
AATGAACGATTCATGAATATGGATGACGAATCAAAAAATTCTATACAATTCTGAAAAACGGAAAG
ATCCCGCGAGTCTAATCATACCATTCCATTATATTGACAATTTCAAAAAACTGTTCATACTATGA
TCATAGTATGAGGGCGGTTGGGCAAGTCGGCCCCCATCGTCTAGTGGTTTAGGACATCTCTCTTT
CAAGGAGGCAGCGGGGATTCGAATTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATGG
ATTACCAATAAGCCTAAAGTGGATTCTTCCTGGGTCGATGCCCGAGCGGTTAATGGGGACGGACT
GTAAATTCGTTGGCAATATGCCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCCAATCT
ACCATGAGATGGTATAACCCCCTTGTCCTTCCGAAATACCCCATACGAAATACGAAGATAAAAAA
AGAATAAAATTTTCTGCTAGATCCCTTATTTCCCTGGGATTGTAG


Right flanking sequence: Indices 411129 -- 411628
CATTTCCAAAACAAAGGGGCTTTTTTTCTTTCCTATTTTTCCATTTCGCTTTTCTTGTTTGTTTG
GGTTTGTAACTATGTGACTAATCGAAGTGGAAGGGCAATCTGATGATACTTCATCAGATGATTGT
ACAAGGAAGACGTAAGGTAGGTTATAGAAAAATTTTTCCATTTCGCTTTTCTTGTTTGTTTGGGT
TTGTAACTATGTGACTAATCGAAGTGGAAGGGCAATCTGATGATACTTCATCAGATGATTGTACA
AGGAAGACGTAAGGTAGGTTATAGAAAAAAGAAGGGAAACAAATGATAAATAAAGGAATTTTGGA
TTGATTGGGTCAGGAATCCAAGTTTGGATTCGGTATGGATAAAAGAACTTCCTATGTTATACTAT
TCAAGTCTCGACGACGAATTGATTTGATAGCTCAGATATTGTTATTCATGATATTGATCCGATTC
AAGATCGTCGAGAGGTAATTCATTCATTGAATTTACAGGCGAAAG



Found at i:411389 original size:127 final size:127

Alignment explanation


    Indices: 411163--411417  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     411153 TTTCTTTCCT

                                                                             
     411163 ATTTTTCCATTTCGCTTTTCTTGTTTGTTTGGGTTTGTAACTATGTGACTAATCGAAGTGGAAGG
          1 ATTTTTCCATTTCGCTTTTCTTGTTTGTTTGGGTTTGTAACTATGTGACTAATCGAAGTGGAAGG

                                                                          
     411228 GCAATCTGATGATACTTCATCAGATGATTGTACAAGGAAGACGTAAGGTAGGTTATAGAAAA
         66 GCAATCTGATGATACTTCATCAGATGATTGTACAAGGAAGACGTAAGGTAGGTTATAGAAAA

                                                                             
     411290 ATTTTTCCATTTCGCTTTTCTTGTTTGTTTGGGTTTGTAACTATGTGACTAATCGAAGTGGAAGG
          1 ATTTTTCCATTTCGCTTTTCTTGTTTGTTTGGGTTTGTAACTATGTGACTAATCGAAGTGGAAGG

                                                                          
     411355 GCAATCTGATGATACTTCATCAGATGATTGTACAAGGAAGACGTAAGGTAGGTTATAGAAAA
         66 GCAATCTGATGATACTTCATCAGATGATTGTACAAGGAAGACGTAAGGTAGGTTATAGAAAA

             
     411417 A
          1 A

     411418 AGAAGGGAAA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36


Consensus pattern (127 bp):   
ATTTTTCCATTTCGCTTTTCTTGTTTGTTTGGGTTTGTAACTATGTGACTAATCGAAGTGGAAGG
GCAATCTGATGATACTTCATCAGATGATTGTACAAGGAAGACGTAAGGTAGGTTATAGAAAA

Left flanking sequence: Indices 410663 -- 411162
GGGTCGATGCCCGAGCGGTTAATGGGGACGGACTGTAAATTCGTTGGCAATATGCCTACGCTGGT
TCAAATCCAGCTCGGCCCAATAATTCGCCAATCTACCATGAGATGGTATAACCCCCTTGTCCTTC
CGAAATACCCCATACGAAATACGAAGATAAAAAAAGAATAAAATTTTCTGCTAGATCCCTTATTT
CCCTGGGATTGTAGTTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGC
CCCGTCAGTCCCGACGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTC
AGGGGGCAGAATTCAATTGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCC
GTCAGTCCCGACGGATCCAATAAATACATCAATTAATTTCTCCCTTTCTATGAAAGGATGTCAGG
GGGCAGAATTCCATTTCCAAAACAAAGGGGCTTTTTTTCTTTCCT


Right flanking sequence: Indices 411418 -- 411917
AGAAGGGAAACAAATGATAAATAAAGGAATTTTGGATTGATTGGGTCAGGAATCCAAGTTTGGAT
TCGGTATGGATAAAAGAACTTCCTATGTTATACTATTCAAGTCTCGACGACGAATTGATTTGATA
GCTCAGATATTGTTATTCATGATATTGATCCGATTCAAGATCGTCGAGAGGTAATTCATTCATTG
AATTTACAGGCGAAAGATTTATCATCTCTATGGGATTAAATCCCGAGTTATTGCGAAGTAAAAAA
ACCGATGAGATTATGGAAGTAAATATTCTTGCATTTATTGCGACTGCACTATTCATTCTAGTTCC
TACCGCTTTTCTACTTATCATTTACGTAAAAACAGTCAGTCAAAATGATTAATTCAATTCAATTT
TCAAATGAATTTGAATGAAACTTTCCTTCTGAGTTCTTATCAAAAATGGACGAAGTAAAATGAAA
AGGATTCCAATTTCGCGTCTTAAATGAAATGAGCGGACTATAATC



Found at i:412293 original size:127 final size:127

Alignment explanation


    Indices: 412067--412321  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     412057 ATTCTCTTCA

                                                                             
     412067 TATATGTGTATATAAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGC
          1 TATATGTGTATATAAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGC

                                                                          
     412132 TACATCTACTTGTTCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAAT
         66 TACATCTACTTGTTCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAAT

                                                                             
     412194 TATATGTGTATATAAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGC
          1 TATATGTGTATATAAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGC

                                                                          
     412259 TACATCTACTTGTTCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAAT
         66 TACATCTACTTGTTCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAAT

             
     412321 T
          1 T

     412322 TTGATTCGAA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41


Consensus pattern (127 bp):   
TATATGTGTATATAAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGC
TACATCTACTTGTTCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAAT

Left flanking sequence: Indices 411567 -- 412066
TGATATTGATCCGATTCAAGATCGTCGAGAGGTAATTCATTCATTGAATTTACAGGCGAAAGATT
TATCATCTCTATGGGATTAAATCCCGAGTTATTGCGAAGTAAAAAAACCGATGAGATTATGGAAG
TAAATATTCTTGCATTTATTGCGACTGCACTATTCATTCTAGTTCCTACCGCTTTTCTACTTATC
ATTTACGTAAAAACAGTCAGTCAAAATGATTAATTCAATTCAATTTTCAAATGAATTTGAATGAA
ACTTTCCTTCTGAGTTCTTATCAAAAATGGACGAAGTAAAATGAAAAGGATTCCAATTTCGCGTC
TTAAATGAAATGAGCGGACTATAATCGGCAGTATTTTATGAATTCGATAGTATGGTAAGAACGAT
TCATCTATTTCTTTCTTACCATACTATCTATCTCTTAGTCTATAAAGTTCTACTCTAGAATAAAG
ATAGAGGCTTCATTTTATATAGATCAATCTACAATATTCTCTTCA


Right flanking sequence: Indices 412322 -- 412821
TTGATTCGAATTACTAGATTTTTTATGATTTCCAATCTGAATATCGGTATTTATGGAAAGAATCA
ATAATTGATTTAACTATTGACAGGAGGACCACGGGCACTTCTTCGGATTTCGAAAAGGAAGAGTA
AACCTCACCGATTTTTAACGCCCGAACCATGATATGAAATAAGTCGATAAAGAAAAAATATCCTT
TCTAAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTTATTAT
TGCATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCGTCCTTTCT
AAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTTATTATTGC
ATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCGTATACACTTAA
CAAAACGACTTCTTCTTTGAAGAGTCAAGAGGGATCAAAAAAAGG



Found at i:412728 original size:127 final size:127

Alignment explanation


    Indices: 412512--412766  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     412502 AGAAAAAATA

                                                                             
     412512 TCCTTTCTAAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTT
          1 TCCTTTCTAAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTT

                                                                          
     412577 ATTATTGCATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCG
         66 ATTATTGCATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCG

                                                                             
     412639 TCCTTTCTAAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTT
          1 TCCTTTCTAAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTT

                                                                          
     412704 ATTATTGCATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCG
         66 ATTATTGCATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCG

             
     412766 T
          1 T

     412767 ATACACTTAA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32


Consensus pattern (127 bp):   
TCCTTTCTAAAATTAGAAACCCATCGGTAAATGCGCAATATGTGACTCGCCTGAGGCAAGATCTT
ATTATTGCATAGTCTCTCGTTAGACAACCACTATGTCTATATCATTTCTCATAGAAAGTGCG

Left flanking sequence: Indices 412012 -- 412511
TAGAATAAAGATAGAGGCTTCATTTTATATAGATCAATCTACAATATTCTCTTCATATATGTGTA
TATAAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGCTACATCTACT
TGTTCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAATTATATGTGTATAT
AAATTCCCTATATTGTATGGAATTGACATAGCACCCAATTCTATTTATTTGCTACATCTACTTGT
TCCGATCAATCTGAAATAATCGCCTTAACTCTTATCTTATGATTCTAATTTTGATTCGAATTACT
AGATTTTTTATGATTTCCAATCTGAATATCGGTATTTATGGAAAGAATCAATAATTGATTTAACT
ATTGACAGGAGGACCACGGGCACTTCTTCGGATTTCGAAAAGGAAGAGTAAACCTCACCGATTTT
TAACGCCCGAACCATGATATGAAATAAGTCGATAAAGAAAAAATA


Right flanking sequence: Indices 412767 -- 413266
ATACACTTAACAAAACGACTTCTTCTTTGAAGAGTCAAGAGGGATCAAAAAAAGGTCTGGTCTTC
CTCAGTATCCATCTAATCTTAATCTATAAGGATAGTAAGAGCCCCTTAATTGAAATAGCAAATTT
CAGAAGAATTAGATTGGAAAAAATTTCCAATCATCTGGATCCCTTTCCTTTCGAAATACAAACAT
GGGAATCATTGAAATAGTTCTTTGATTGAAAGAGTATGATTCCTATCATACATTACTCCATTGGA
CTCCAATGGAATTGGAAATTCAGATATTTTGATTTTAAATAGTTCAAAACGCGTTGCAGAACGAT
CTATAAAACAATTGATACAGTTTGATTCCTCAACTCAATTAGTAGTACTTCTAAAGTCCACTTCT
TCCCCACACTACGAGTGAAAGGGAAAATGTAAAGACTACCATTAAAGCAGCCCAGGCGAGACTTA
CTATATCCATGTGAGTTATGTCCCCTATCTCTATAAATATGAAGG



Found at i:414139 original size:127 final size:127

Alignment explanation


    Indices: 413920--414173  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     413910 GGATTCACAA

                                                                             
     413920 TCTTTTAGAAAACCCTCAGACCAGATGCTTAGAATCAAACAAGTATCAACAGAACAGAAGAGAAG
          1 TCTTTTAGAAAACCCTCAGACCAGATGCTTAGAATCAAACAAGTATCAACAGAACAGAAGAGAAG

                                                                          
     413985 AAAAGATTTAGAGCTTTTTGTTGATCAGGCGACACCCGGATTTGAACTGGGGAAAAAGGATT
         66 AAAAGATTTAGAGCTTTTTGTTGATCAGGCGACACCCGGATTTGAACTGGGGAAAAAGGATT

                                                                             
     414047 TCTTTTAGAAAACCCTCAGACCAGATGCTTAGAATCAAACAAGTATCAACAGAACAGAAGAGAAG
          1 TCTTTTAGAAAACCCTCAGACCAGATGCTTAGAATCAAACAAGTATCAACAGAACAGAAGAGAAG

                                                                          
     414112 AAAAGATTTAGAGCTTTTTGTTGATCAGGCGACACCCGGATTTGAACTGGGGAAAAAGGATT
         66 AAAAGATTTAGAGCTTTTTGTTGATCAGGCGACACCCGGATTTGAACTGGGGAAAAAGGATT

     414174 CTATGCGCAG


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23


Consensus pattern (127 bp):   
TCTTTTAGAAAACCCTCAGACCAGATGCTTAGAATCAAACAAGTATCAACAGAACAGAAGAGAAG
AAAAGATTTAGAGCTTTTTGTTGATCAGGCGACACCCGGATTTGAACTGGGGAAAAAGGATT

Left flanking sequence: Indices 413420 -- 413919
CAAGGGAATGGGAACATGTAGGAATAATAAGGCCTATTCTTTTTTTGTTTTTGTTGACCTTCGTA
AGTAAAAACATAAAGGGGGAAATCACTAAAAAAGAGAAATCACTATCTATTACAGACCCCTATTT
CCCCCTTTGTTTGATCTAATCCGTATCCCCTTTCCCGATTATCGCTGTGAAAGAGGGGGGCTTGA
CTAGGGGTTGCCGAAAAGAAAGAATTTGGTTTTGCCCCTTTTTCTATAAAAGTCAATTATCCATC
TAATCTAATATTGATTGAATACCTGAGCACTCCAAGATTCTCGCGAGTCCGTCGTATATAAAATA
AAGCAACTTCCGCCCCTTTCCACATGAATCAGATTTCCTATCAGGCTCTCCAATCTAAGTCAAGA
TCCAGTCATTCGACACTACCTTAGTAATAGAAGGGAATCGTGAAGTCTTGACAGTCCCTCTATCA
TTAGATTAGAATATTTCCTTGAATCCTAGATGCAAGGATTCACAA


Right flanking sequence: Indices 414174 -- 414673
CTATGCGCAGACGTGAAAGCTCTATCAATAGAAGCATTCTAGCCTATTTTTTTTTATAGAGGAAC
GATTCCCTCGTCTGAGAACCGCCATTCATGTACTATTCCTCCCCACTAAAAAGAGCGATTGAGAA
TCTCGAGAACCTAAACAAAAATGAAGAAGTGAGCGTACCCCAAGGCTCTCCTCTCTCCCCCCTTT
TTAGCTAACCACCATCAACCCCATTTTTCACCTTGAATTGGTCAAAGCCAAAAATATGATGAATA
GAAGGAAAGGAGATCAGAAAGATACGCGAACGACTTGACTATAGTATAGGTCGGATGTTTTCGTG
AGCAGTAAGCAGCAGATCTCCCCTTATTTTGGGAAAGTTGGCGGCCGCGTGTGAATTCTTTCAAG
GCAAGGGGCGGCCTGATTCGACATTGTTGTTTACTCTGATCCGGTCGAGGTGGTTTTCGTTTACC
AGCACGTAGGTGGTCTAAATTCCTATGACCGAGTCTTTCTGGCCC



Found at i:451633 original size:16 final size:16

Alignment explanation


    Indices: 451612--451642  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

     451602 GCCTAGTAGT

                            
     451612 ACAAAGAAAGCCAAAG
          1 ACAAAGAAAGCCAAAG

                      *    
     451628 ACAAAGAAAGGCAAA
          1 ACAAAGAAAGCCAAA

     451643 CCAAGACACT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.65, C:0.16, G:0.19, T:0.00


Consensus pattern (16 bp):   
ACAAAGAAAGCCAAAG

Left flanking sequence: Indices 451112 -- 451611
GTTCGAATTTGGATCCCCATATTTGTAACCTTTGTCATTTAGGCAAACAAGCCGGAATTCCATCC
TTCCTTTCTTCTTCTTTTTCGCGCAAAAACAGAGATTGAAAACTCAGGAGAGGATTTAGCCTCCC
GGTGGACTACAGAAAAATTGAGAATGGTGAGAATTTGACTTTCTTTTATGATCAAGTTAGTGTGT
TTTTTCTACGCACACTAGTGAAAGGCGCTCACGTAAAACACACGAACTGAACTAGCATTAGGGTT
TGGTATTTCAGACGGCGCAGACTCAAGGAAGAAGGAAGCTTCAGAGCTGGAAAGGCTTAATAAGC
ACATCTCCAGTACACTTAACTTACACCTTATTTCAACTTTCACATTCATTTGAAGCACTTACGAA
CAAGTACTTATTATTATATTAACATAAGCATTGAACACTTTCGACTAGATTTTGGCCCATACATG
CAAACACACCAAAGAAAGGAAAACAAAGACACTTAGCCTAGTAGT


Right flanking sequence: Indices 451643 -- 452142
CCAAGACACTACTTTTTGGCACCGGACTCTTTTAGTCTCCTTGGCGCCCGCGGATGACCGCCTGC
ACAATTAGGTCTTGGCGTTCTTGGATTTTATGTTTCCTATCCTCCAGAAAGCGAATTTTGTTCCG
TATGTTCATCATTCTATTCTGTATGATTTCGGGATCAATAGGGGGCAGATGTTCCCAAAAAGCCG
CGAGCCGTTGCTCCCACCTGCACTTCATGTTTTCGACGGTTTGGAGCTCTTGCTCAATTACTTGA
AGTCGGGCGTGGATATCCATGGAAACTGAAACTCAAAGTCTTTTTTTCTGACTTCTAAGTTCGCG
TCTCTCTTTGAAAATATAGACTAAAAGAAGCTTCTAGGCCTTGGAGGCGCTTAACTCTTTCTTAT
TATTAGTAAGAATTGTTGTCTTAGTTCCGTAACATGGTTCAACCCCGGCTTTTCATGAATATTGA
ACCCCATCCACTAGATTTTAGTGCGCTGAATAATTGTCCTTTCCC



Found at i:455833 original size:127 final size:127

Alignment explanation


    Indices: 455607--455861  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     455597 TAAACGATCC

                                                                             
     455607 TCTTCGGATAATTCGTCCAACCCAAGGATAGCTATAATGTCCTGAAGCTCTTTGTAACGTTGTAA
          1 TCTTCGGATAATTCGTCCAACCCAAGGATAGCTATAATGTCCTGAAGCTCTTTGTAACGTTGTAA

                                                                          
     455672 AGTTTGCTTAACTCTTTGCGCAGTTTCGTAATGTTCCTCACCAACGATCCGAGGTTGAAGCA
         66 AGTTTGCTTAACTCTTTGCGCAGTTTCGTAATGTTCCTCACCAACGATCCGAGGTTGAAGCA

                                                                             
     455734 TCTTCGGATAATTCGTCCAACCCAAGGATAGCTATAATGTCCTGAAGCTCTTTGTAACGTTGTAA
          1 TCTTCGGATAATTCGTCCAACCCAAGGATAGCTATAATGTCCTGAAGCTCTTTGTAACGTTGTAA

                                                                          
     455799 AGTTTGCTTAACTCTTTGCGCAGTTTCGTAATGTTCCTCACCAACGATCCGAGGTTGAAGCA
         66 AGTTTGCTTAACTCTTTGCGCAGTTTCGTAATGTTCCTCACCAACGATCCGAGGTTGAAGCA

             
     455861 T
          1 T

     455862 GGTTGACGTT


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33


Consensus pattern (127 bp):   
TCTTCGGATAATTCGTCCAACCCAAGGATAGCTATAATGTCCTGAAGCTCTTTGTAACGTTGTAA
AGTTTGCTTAACTCTTTGCGCAGTTTCGTAATGTTCCTCACCAACGATCCGAGGTTGAAGCA

Left flanking sequence: Indices 455107 -- 455606
GAAAACCTATTTGCCGATAGGAGTATCGGTTAGGAGTATAAGAGTATAGTAAGATCTTCCTTAAA
GAGCTAAGAGTCCAATGGGGAAGGGTTAACTAATTATGTATATAAGCAGTCAAAGAAGATCGGAT
GGAATCTAGCCTGACAAGCAGGCAATGGGATAAATAAACCTCGATATCTTCTATATTCTATGCTG
CGTAAAGCGTCTTTCTTGCTCGGTGATCAGTCAATGAAGTCATTCTGGATCCCTGACTCGTCTCA
TTCTGGGCCTTTGGCCTCTTTGACATTGGGTCAAATCTGTCTGGGCATCGTCCCTTCTCTTGATC
TACTTCGGTTACAACTCGACAGTGAGTATTGCGTGTCAAACGCGGGTCGAGAACTGACCATTACT
CTTTATACATTTATTTTACAACCAAAGATACACAGAGAAAAATCACCCACCCGAAGCGATCAACG
TGGCTTATTCGCTCTCTTCGCGCTCTTGCTACGGTTAAACGATCC


Right flanking sequence: Indices 455862 -- 456361
GGTTGACGTTGAATCTAAAGGATCTACTGCTGGATAGATCCCCTTGGCAGCTAATCCTCTTGATA
GTACGGTAGTAGCATCTAAATGTGCAAATGTCGTAGCAGGAGCAGGGTCGGTCAAATCGTCTGCA
GGTACATAAACTGCTTGAATAGAAGTTATGGACCCTTCTTTGGTAGAAGTAATTCTTTCTTGTAA
AGTACCCATTTCGGTACTCAGGGTAGGTTGATAACCGACAGCGGAAGGCATTCTACCCAATAAGG
CCGATACTTCGGATCCTGCTTGGACGAAACGGAAGATATTGTCGATAAATAGAAGTACGTCTTGT
TCATTAACATCTCGGAAATATTCCGCCATAGTTAGGGCAGTCAAACCAACTCTCATACGAGCTCC
AGGCGGTTCATTCATCTGGCCGTAAACTAGAGCCACTTTTGATTCTGCAATATTTTCTTCATTAA
TCACTCCAGATTCTTTCATTTCCATGTAAAGATCATTTCCTTCAC



Found at i:456641 original size:127 final size:127

Alignment explanation


    Indices: 456415--456669  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     456405 GGCTTTGGCA

                                                                             
     456415 ATATTGTTAATCAATTCCATAATGAGTACCGTTTTACCAACTCCAGCTCCTCCAAATAGTCCGAT
          1 ATATTGTTAATCAATTCCATAATGAGTACCGTTTTACCAACTCCAGCTCCTCCAAATAGTCCGAT

                                                                          
     456480 TTTTCCCCCACGGCGATAAGGGGCTAAAAGATCTACTACTTTAATTCCTGTTTCAAAAATAG
         66 TTTTCCCCCACGGCGATAAGGGGCTAAAAGATCTACTACTTTAATTCCTGTTTCAAAAATAG

                                                                             
     456542 ATATTGTTAATCAATTCCATAATGAGTACCGTTTTACCAACTCCAGCTCCTCCAAATAGTCCGAT
          1 ATATTGTTAATCAATTCCATAATGAGTACCGTTTTACCAACTCCAGCTCCTCCAAATAGTCCGAT

                                                                          
     456607 TTTTCCCCCACGGCGATAAGGGGCTAAAAGATCTACTACTTTAATTCCTGTTTCAAAAATAG
         66 TTTTCCCCCACGGCGATAAGGGGCTAAAAGATCTACTACTTTAATTCCTGTTTCAAAAATAG

             
     456669 A
          1 A

     456670 GAATTTTGTA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31


Consensus pattern (127 bp):   
ATATTGTTAATCAATTCCATAATGAGTACCGTTTTACCAACTCCAGCTCCTCCAAATAGTCCGAT
TTTTCCCCCACGGCGATAAGGGGCTAAAAGATCTACTACTTTAATTCCTGTTTCAAAAATAG

Left flanking sequence: Indices 455915 -- 456414
ATCCTCTTGATAGTACGGTAGTAGCATCTAAATGTGCAAATGTCGTAGCAGGAGCAGGGTCGGTC
AAATCGTCTGCAGGTACATAAACTGCTTGAATAGAAGTTATGGACCCTTCTTTGGTAGAAGTAAT
TCTTTCTTGTAAAGTACCCATTTCGGTACTCAGGGTAGGTTGATAACCGACAGCGGAAGGCATTC
TACCCAATAAGGCCGATACTTCGGATCCTGCTTGGACGAAACGGAAGATATTGTCGATAAATAGA
AGTACGTCTTGTTCATTAACATCTCGGAAATATTCCGCCATAGTTAGGGCAGTCAAACCAACTCT
CATACGAGCTCCAGGCGGTTCATTCATCTGGCCGTAAACTAGAGCCACTTTTGATTCTGCAATAT
TTTCTTCATTAATCACTCCAGATTCTTTCATTTCCATGTAAAGATCATTTCCTTCACGAGTACGT
TCACCCACTCCGCCAAATACGGATACGCCCCCATGGGCTTTGGCA


Right flanking sequence: Indices 456670 -- 457169
GAATTTTGTATCTAACTGTATAAAGGCAGGCGCAGATCTATGAATAGGAGATGTTGTACGAGTAT
CTACAGGACCTCATTGATCAAAAGCTCCTGATATTCCCGAGGACAAGCCTTATCCAAAATCCTCT
TCCCATTCATGAAGTTGGAAGCAGTAGTACCACTCCTGCCGTCAACATGATGTTCTCTCTTCTAT
GCAATTAGAAGAGCGAAGCGAGTCAGTCTATTAATGAGTATGAATAGTAGGGGGTGCAGAGTGAA
CCTTCCTATTCCAACGGCGATGTAAAGAAATCTTCTTCACCAGAGACTCTCGCACCGGGATATGA
GTTGAAAACAGCTCGTAGGGAGAGTAGTTAAGCTTGACCAGTAGTTGGTATGGCGGAGTGAAGGC
TTAGCTTTGAAAGAAAATAAGATCTTGGACAGGAAAGGCTCAATCTAATCCGGGTATTCCCTATA
GTAAGCAGTCTACTTTGCAGTAAAGAAGGGAGTCGGCTTACCGCG



Found at i:466173 original size:127 final size:127

Alignment explanation


    Indices: 465942--466327  Score: 530
    Period size: 127  Copynumber: 3.0  Consensus size: 127

     465932 CATCCCATGC

                *                                                            
     465942 TTTCCGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGG
          1 TTTCAGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGG

                                                                          
     466007 AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTA
         66 AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTA

                                                                             
     466069 TTTCAGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGG
          1 TTTCAGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGG

                                                                          
     466134 AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTA
         66 AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTA

                   ***  *****  ***    ****       *              *            
     466196 TTTCA--CACAATTCTTCTGGTCATGCCTTTTACTCTTTAC-T-TTCTA-TATTCGTACAGGCTT
          1 TTTCAGTTGGAAAAGAAC-CAACA--AAAGTT-CTCTATACTTCTTC-ACTACTCGTACAGGCTT

                                                                             
     466256 GACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACT
         61 GACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACT

              
     466321 TA
        126 TA

                 
     466323 TTTCA
          1 TTTCA

     466328 CACAATTCTT


Statistics
Matches: 236,  Mismatches: 18, Indels: 10
        0.89            0.07        0.04

Matches are distributed among these distances:
 125    3  0.01
 126    2  0.01
 127  220  0.93
 128    4  0.02
 129    7  0.03

ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33


Consensus pattern (127 bp):   
TTTCAGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGG
AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTA

Left flanking sequence: Indices 465442 -- 465941
AGGAACTGGCTAACTCAAGACAGTGTAGGAGTAGGAATTTCAATCAACTCAGATGCAACAACAGA
AGCTCCTTAGTATCCTGCAGCTACGGAAATGGGGCTCCTAGGGTTCCCGAGAAGGGTAAGCTAAG
AAGAGGTCGAGGGCAAAAGAAAGAAAAAAAGCAAGTCAAAACTTATCCGGGATTCCCTTGATTGG
TCTATCGTATATAAGATCACGGCTGCATTTAGGAGTGATCTTCCCCTAGAACTCTCAATTGAATA
AGAGAAGACAGCGAGGAAAGGTTTTGATTGAGAGTAGTACGTCTGCGGGGCTCAATCATAGTCAA
AATCAGACTTTTGGCTCTTTAGGTTAGGAAGGCGAGCTATATGCTTAATGCAAGTCGAACGTTGT
ATTCTCGGAAACGATTTGAGATTCGGTAAGTGGCTCAGTGAGTGCTCTCTAAGGCTTGTATGTAA
GAAAAAAAGGGGGGTCTCATTGTGCTTTATTTCCCCATCCCATGC


Right flanking sequence: Indices 466328 -- 466827
CACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATATTGCCATATGCAATGATGGAGAT
GGAGTACTTGGGATCAGCAGAATTCTAAAACTACGGAACCAACTGGTTTCACACCGGGAGAACAA
CATCCGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGTGTAT
CCTATATGTACTCCAGTTTATTCGAAGTATCCCAATGGTGTAACGCCGTCGACTTATTGGGAAAA
AGGAAGAAGATCACTTTGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGAATGGAAAGAAA
TATATTCTATTTGATTTCGAAGTCCTCATATAGCACTTCTTCCAATCCTGGATGGGGGATCACTT
GTAGGAATGACATAATGCTAATGCATGTTCTACACGGCCAAGGAAGCATCGGTTTTTAATCTCGG
TCGTTCGGAAGAGCATTTTTCTCGATCAGAATAGTGGAATGGAAG



Found at i:466343 original size:127 final size:127

Alignment explanation


    Indices: 465990--466371  Score: 531
    Period size: 127  Copynumber: 3.0  Consensus size: 127

     465980 TCTTCACTAC

                                                                             
     465990 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
          1 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA

                                 ***  *****  ***    ****       *             
     466055 GATAAATTCACTTATTTCAGTTGGAAAAGAAC-CAACA--AAAGTT-CTCTATAC-TTCTTCACT
         66 GATAAATTCACTTATTTCA--CACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTC-T-A-T

             *
     466115 AC
        126 AT

                                                                             
     466117 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
          1 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA

                                                                          
     466182 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT
         66 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT

                                                                             
     466244 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
          1 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA

                                                                          
     466309 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT
         66 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT

             
     466371 T
          1 T

     466372 GCCATATGCA


Statistics
Matches: 233,  Mismatches: 17, Indels: 10
        0.90            0.07        0.04

Matches are distributed among these distances:
 125    3  0.01
 126    2  0.01
 127  214  0.92
 128    3  0.01
 129    8  0.03
 130    3  0.01

ACGTcount: A:0.30, C:0.20, G:0.15, T:0.36


Consensus pattern (127 bp):   
TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT

Left flanking sequence: Indices 465490 -- 465989
TCAGATGCAACAACAGAAGCTCCTTAGTATCCTGCAGCTACGGAAATGGGGCTCCTAGGGTTCCC
GAGAAGGGTAAGCTAAGAAGAGGTCGAGGGCAAAAGAAAGAAAAAAAGCAAGTCAAAACTTATCC
GGGATTCCCTTGATTGGTCTATCGTATATAAGATCACGGCTGCATTTAGGAGTGATCTTCCCCTA
GAACTCTCAATTGAATAAGAGAAGACAGCGAGGAAAGGTTTTGATTGAGAGTAGTACGTCTGCGG
GGCTCAATCATAGTCAAAATCAGACTTTTGGCTCTTTAGGTTAGGAAGGCGAGCTATATGCTTAA
TGCAAGTCGAACGTTGTATTCTCGGAAACGATTTGAGATTCGGTAAGTGGCTCAGTGAGTGCTCT
CTAAGGCTTGTATGTAAGAAAAAAAGGGGGGTCTCATTGTGCTTTATTTCCCCATCCCATGCTTT
CCGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTAC


Right flanking sequence: Indices 466372 -- 466871
GCCATATGCAATGATGGAGATGGAGTACTTGGGATCAGCAGAATTCTAAAACTACGGAACCAACT
GGTTTCACACCGGGAGAACAACATCCGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAA
AAGGTTTTAGCACCGGTGTATCCTATATGTACTCCAGTTTATTCGAAGTATCCCAATGGTGTAAC
GCCGTCGACTTATTGGGAAAAAGGAAGAAGATCACTTTGATCTCTTGTTTCGGAGAAATAAGTGG
CTCACGAGGAATGGAAAGAAATATATTCTATTTGATTTCGAAGTCCTCATATAGCACTTCTTCCA
ATCCTGGATGGGGGATCACTTGTAGGAATGACATAATGCTAATGCATGTTCTACACGGCCAAGGA
AGCATCGGTTTTTAATCTCGGTCGTTCGGAAGAGCATTTTTCTCGATCAGAATAGTGGAATGGAA
GGCACTACAAGAAAAAGAGACTCCTTTTCCAATCGCCCCGCGAAG



Found at i:475927 original size:127 final size:127

Alignment explanation


    Indices: 475701--475954  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     475691 ACGCCAATGG

                                                                             
     475701 AATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCCATACA
          1 AATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCCATACA

                                                                          
     475766 TAACGAATTGGTGTGGTATATTCATATCATAATATATGAACAGTAAGAACTAGCATTCTTAT
         66 TAACGAATTGGTGTGGTATATTCATATCATAATATATGAACAGTAAGAACTAGCATTCTTAT

                                                                             
     475828 AATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCCATACA
          1 AATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCCATACA

                                                                          
     475893 TAACGAATTGGTGTGGTATATTCATATCATAATATATGAACAGTAAGAACTAGCATTCTTAT
         66 TAACGAATTGGTGTGGTATATTCATATCATAATATATGAACAGTAAGAACTAGCATTCTTAT

     475955 TGAGACTAGA


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Consensus pattern (127 bp):   
AATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCATCCATACA
TAACGAATTGGTGTGGTATATTCATATCATAATATATGAACAGTAAGAACTAGCATTCTTAT

Left flanking sequence: Indices 475201 -- 475700
TCATCCAAAGTCCGTCCTCCACCCAGAACTGACGGGTCTTCCCTTCTCGCATCAAATTCAGGAGG
GCTTGAGCCGTAGGATCTTTAGACTCATTCTCCTTAAGATGTTCCCGCACTGAGGTTGCCACTTG
GCTGGCGGAGGTGTGGGAAAGGTATTTTAAAGCTGCTAGTTCTGCTTTCCGGCTAAGAGCATCTG
CTATTTGATTGGTTTGATCTGTCTTATATTCAAAGTGAAAGTCGAATTCTGCCAAGAATTCCTGC
CACCGTGCGGGGGAGCTTTGGCTGCGTAAGAAAATGGCTCACTGCAGTCTTATCTGTCTTCACTA
CAAACTTGGACCCCAATAAGTAGTGTTTCCAGACCCTAACCTAAGGCAATGGATTACTGCCAATA
GATCCTTTTCTTGTGCTGTGTATCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACTCATAA
TTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCACGCCAATGG


Right flanking sequence: Indices 475955 -- 476454
TGAGACTAGAACTCATAGGGAAGAAAATAGATTTATGGATGGAATCAAATATGCAGTATTTACAG
ACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGG
ACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCG
ACTTCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGA
TCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATA
CTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAACCGTAGA
CAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCATTGTGGTAAAGGTC
GTAATGCCAGAGGAATCATTACCGCAAGGCATAGAGGGGGAGGTC



Found at i:477674 original size:127 final size:127

Alignment explanation


    Indices: 477448--477701  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     477438 GTAGCGAAAC

                                                                             
     477448 TGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCC
          1 TGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCC

                                                                          
     477513 AAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGG
         66 AAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGG

                                                                             
     477575 TGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCC
          1 TGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCC

                                                                          
     477640 AAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGG
         66 AAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGG

     477702 CAGAGCCGGA


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.31, C:0.17, G:0.30, T:0.21


Consensus pattern (127 bp):   
TGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCC
AAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGCGAACCAGAAAAGTTTGGG

Left flanking sequence: Indices 476948 -- 477447
AGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGTGGGAATTC
TAAAGATTCCCCGGGGGAAAAATAGAGATGTCTCCTACGTTACCCATAATATGTGGAAGTATCGA
CGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGG
GAAGACCTAGGATGTAGAAGATCATACCATGAGTGATTCGGCAGATTTGGATTCATATAGATATC
CACCCATGTGGTACTTCATTGTACGATATATAAAAGATCCATCTGTATAGATATCATCATCTACA
TCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAA
AGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTG
GAAAGGGTGGACAATTAGTTAGAGCAGCGGGTGCTGTAGCGAAAC


Right flanking sequence: Indices 477702 -- 478201
CAGAGCCGGATCTAAGCGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTG
TAGACCATCCCCATGGGGTGGTGAAGGTAGAGCCCCAATTGGTAGAAAAAAATGCCTTTCAAAAA
TCACGAGTTGAAGAGCATCGATGTGGGGACGAAAATGCCTTATTAAGTTAAGTTTAGAAATGTTT
TTTTTAAACTGACAGATGGAATATCCAATATAACAAGTAAAAACCTATATAGGTAGCAGAAGGAC
TACGAATAGTAAGGAGGCAAATGCCAGGAGTGCCAGGCACATAGTGGAGGCGGAAATCAATACAT
GTCGGTGCGGCTATTCATTCATTTCTTTTTTCATTCAATATCTATTTACGTTCGAGCTATCGTCG
AATCTCGTTCATTCAACTTTCCTTTTCGAGCTGTCGAATCAAATATATCAAGATCATGTGGGCAT
TCATAGGTCAAAAAAAATATTGGTAAGTAAAAATGCCCTTAATTA



Found at i:484947 original size:127 final size:127

Alignment explanation


    Indices: 484721--484975  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     484711 AGGACCCTAC

                                                                             
     484721 TTCCTAATAGCTAGGCAGACTCGCAGGAAGATGCTCCTGATAGTGCGCATTTGTATTAGTACAAA
          1 TTCCTAATAGCTAGGCAGACTCGCAGGAAGATGCTCCTGATAGTGCGCATTTGTATTAGTACAAA

                                                                          
     484786 AATGGATCTATGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCT
         66 AATGGATCTATGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCT

                                                                             
     484848 TTCCTAATAGCTAGGCAGACTCGCAGGAAGATGCTCCTGATAGTGCGCATTTGTATTAGTACAAA
          1 TTCCTAATAGCTAGGCAGACTCGCAGGAAGATGCTCCTGATAGTGCGCATTTGTATTAGTACAAA

                                                                          
     484913 AATGGATCTATGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCT
         66 AATGGATCTATGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCT

             
     484975 T
          1 T

     484976 GTCATTCCTA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Consensus pattern (127 bp):   
TTCCTAATAGCTAGGCAGACTCGCAGGAAGATGCTCCTGATAGTGCGCATTTGTATTAGTACAAA
AATGGATCTATGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCT

Left flanking sequence: Indices 484221 -- 484720
GGGTGCAGCTCTGGTCCCTACTTATTGTATAAGAGAGTCGTGCTTCTCTTCCTCTTCCACAGGTC
TCTCGAACCTGCAGGTTGCTGCTATCCCCCGAAGAGAATAGACGAAGAGGTTCTTCCCATTATGG
AATGCAAGAGCAAAAGCGGAAATCCCAGTATTGTAAGAGAAGGGTCAGCTCATCCAAGCGGAGCT
AAGAGGTGGTGCATTTCTGACTCACTGAGGAACCAAGTCTATCCCCGAGTGGTCAACCCTGTTGT
TTACTTGAATTGCCTCGTGGATGTCAACCCAGGTCTTGTTTTGTCCAATCGAGTGGGTATTGGTG
TTGTCCCCTTAAGCTATAAGGTGGGCCGCTTATTCCCATCCAAAAACCGGATCCCTAGGCCAACC
CTACAGGAAAGCTACTTAAGAAGACAGAACCCCGAGGGAAATCGTGAATCTTTTCATAGGTACTT
ACCCTCGTTACTAAGATGGGTATATCCGGCTTTCTAGGACCCTAC


Right flanking sequence: Indices 484976 -- 485475
GTCATTCCTATCCGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACC
GCAACCGATTGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTGTC
ATTCCTATCCGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACCGCA
ACCGATATATCCGCTGCTATTATCCGCTCTTAGGTTGCAGTTGCTCTTTGAGTTATCTCTTTCTT
TATGGGTCTTCCCAGGCTTCTAAAAGGTTAGATCAAGATAGGAGAGATAAGAATGGTATTAGATG
GGTGTCTTCTTCTTTCCTTTGGCCATATATTCGTAATGCCCTTTTCCCGGCTAGCAAAAGCAGTA
GTTGACTCGTATTAAAGAAGAATAGGCCTATGGTGAAACTTGAGTTGCTTCACTTTGAGACTGAG
AGCTCTCACTGGTTGAGTCACTGCCAAGTAGGCTTATCAGAGAGC



Found at i:485054 original size:127 final size:127

Alignment explanation


    Indices: 484923--485176  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     484913 AATGGATCTA

                                                                             
     484923 TGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTGTCATTCCTATC
          1 TGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTGTCATTCCTATC

                                                                          
     484988 CGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACCGCAACCGAT
         66 CGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACCGCAACCGAT

                                                                             
     485050 TGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTGTCATTCCTATC
          1 TGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTGTCATTCCTATC

                                                                          
     485115 CGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACCGCAACCGAT
         66 CGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACCGCAACCGAT

     485177 ATATCCGCTG


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23


Consensus pattern (127 bp):   
TGCCCGAGTGCATTACCAAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTGTCATTCCTATC
CGACTAGTAGGAAGCGCGGCTATGGAACTAAGAGAATAGATAGAGCGGCAACCGCAACCGAT

Left flanking sequence: Indices 484423 -- 484922
GGTGCATTTCTGACTCACTGAGGAACCAAGTCTATCCCCGAGTGGTCAACCCTGTTGTTTACTTG
AATTGCCTCGTGGATGTCAACCCAGGTCTTGTTTTGTCCAATCGAGTGGGTATTGGTGTTGTCCC
CTTAAGCTATAAGGTGGGCCGCTTATTCCCATCCAAAAACCGGATCCCTAGGCCAACCCTACAGG
AAAGCTACTTAAGAAGACAGAACCCCGAGGGAAATCGTGAATCTTTTCATAGGTACTTACCCTCG
TTACTAAGATGGGTATATCCGGCTTTCTAGGACCCTACTTCCTAATAGCTAGGCAGACTCGCAGG
AAGATGCTCCTGATAGTGCGCATTTGTATTAGTACAAAAATGGATCTATGCCCGAGTGCATTACC
AAGCCAAGAGCTGGGTAGCTAGTAGTTCTTGTTCTTTCCTAATAGCTAGGCAGACTCGCAGGAAG
ATGCTCCTGATAGTGCGCATTTGTATTAGTACAAAAATGGATCTA


Right flanking sequence: Indices 485177 -- 485676
ATATCCGCTGCTATTATCCGCTCTTAGGTTGCAGTTGCTCTTTGAGTTATCTCTTTCTTTATGGG
TCTTCCCAGGCTTCTAAAAGGTTAGATCAAGATAGGAGAGATAAGAATGGTATTAGATGGGTGTC
TTCTTCTTTCCTTTGGCCATATATTCGTAATGCCCTTTTCCCGGCTAGCAAAAGCAGTAGTTGAC
TCGTATTAAAGAAGAATAGGCCTATGGTGAAACTTGAGTTGCTTCACTTTGAGACTGAGAGCTCT
CACTGGTTGAGTCACTGCCAAGTAGGCTTATCAGAGAGCAAGCAAACCACAGTGCGACGTTCAGG
CCGTGTGGAGCCACTTGCAGTGGATACAGAGAGAATGTTCGAGAAGTGTCACTGGGTTTTCATCC
CTTGGACAGCATGCGTGCTACTGATGAAGAAAAAGGATGGCACATGGAGATTTTGTGTTGACTAC
AGGGATAAAAACCTGACTATTAAAGATTCTTTAATAATCAGCCTT



Found at i:488127 original size:127 final size:127

Alignment explanation


    Indices: 487936--488316  Score: 529
    Period size: 127  Copynumber: 3.0  Consensus size: 127

     487926 CATGCATTCT

                                                                             
     487936 GTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGGAGTTA
          1 GTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGGAGTTA

                                                                          
     488001 ACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTTCA
         66 ACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTTCA

                                                                             
     488063 GTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGGAGTTA
          1 GTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGGAGTTA

                                                                          
     488128 ACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTTCA
         66 ACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTTCA

              ***  *****  ***    ****       *              *                 
     488190 --CACAATTCTTCTGGTCATGCCTTTTACTCTTTAC-T-TTCTA-TATTCGTACAGGCTTGACGG
          1 GTTGGAAAAGAAC-CAACA--AAAGTT-CTCTATACTTCTTC-ACTACTCGTACAGGCTTGACGG

                                                                             
     488250 AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTT
         61 AGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTT

              
     488315 CA
        126 CA

     488317 CACAATTCTT


Statistics
Matches: 232,  Mismatches: 17, Indels: 10
        0.90            0.07        0.04

Matches are distributed among these distances:
 125    3  0.01
 126    2  0.01
 127  216  0.93
 128    4  0.02
 129    7  0.03

ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33


Consensus pattern (127 bp):   
GTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTACTCGTACAGGCTTGACGGAGTTA
ACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTAGATAAATTCACTTATTTCA

Left flanking sequence: Indices 487436 -- 487935
TTACGCGTATGACATCTTCGTTTTTCTATTAGCTACTTATCGAAGAACAAGCAAGATCTAGATTT
CCTTTAATACAAAGAGGAAATAGCGTATAGAAAGAGAAAGTCAGAGTAATCGGCCTTATTTATAT
AACCAATTGGAAGTTGGATCGGAATAGAGCTCTCGATTAGCCGATTTCTTTCCTTGTGATTCTAG
TTCTGATCGTATCCCATAGAAAGCCTAGCGTGGGATACGTACACCCAAAAGCAGATACACAAACA
AAGTAAAGCCGGAAATAAGGATGCGGAGCGGGAAACGGCCACTAAAGACAGGAGTGCTTATTTGG
AGTACGGAACCTGATCGAAGGAGTTGAAAGAGCTCTCGCTTACCAGGTATCCCGCCTGGGCAAGA
CTAAAGGCAAAATCCTTATTCAAAGGCGAAGCAAAGAAAAAAATCAAAGAAAGATGGAACCAGAT
ACATTCTTAAAAGAAAGTGCTTTATTTCCCCATCCCATGCATTCT


Right flanking sequence: Indices 488317 -- 488816
CACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATATGTTGTTATGGAGATTTTTTTTT
CCTTGTCATCTGGAAGCAAAACTTTCTTATTATTATCTGACTAGTATTCGCTTCCAACGAGTTCT
TTTTTTGTTGAAATGTTCTTTTTTTTTATTTCTTTTTGTACGCGCCAGCTTTCTCCTTTTCCACA
ACATATCCCTGCTTTTATATCAGCCCTATTTATTTGGTATTCTCCCATCTGAGCTCCAACTTCTC
GACCACTATATGAATCAACCGCATCAGGATCCGGAATGGGTGGAATTTGTACGACAACGTCTACA
AACCCACGGACTCTCACCCAGGGAGTACGAGGTCATGGTGCGAGACTTCCTAAATACGGAGTTAT
GTTTTGCAACTCGCGACCAAATTTCTGAACTCTATCGACTCATTTTTTATGGTCGAGAGGATCCC
CAATTCTTCATTGATCCTCTCGACCTGGATTCCATACTGAAAGTA



Found at i:488332 original size:127 final size:127

Alignment explanation


    Indices: 487979--488359  Score: 529
    Period size: 127  Copynumber: 3.0  Consensus size: 127

     487969 TCTTCACTAC

                                                                             
     487979 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
          1 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA

                                 ***  *****  ***    ****       *             
     488044 GATAAATTCACTTATTTCAGTTGGAAAAGAAC-CAACA--AAAGTT-CTCTATAC-TTCTTCACT
         66 GATAAATTCACTTATTTCA--CACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTC-T-A-T

             *
     488104 AC
        126 AT

                                                                             
     488106 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
          1 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA

                                                                          
     488171 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT
         66 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT

                                                                             
     488233 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
          1 TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA

                                                                          
     488298 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT
         66 GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT

     488360 GTTGTTATGG


Statistics
Matches: 232,  Mismatches: 17, Indels: 10
        0.90            0.07        0.04

Matches are distributed among these distances:
 125    3  0.01
 126    2  0.01
 127  213  0.92
 128    3  0.01
 129    8  0.03
 130    3  0.01

ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35


Consensus pattern (127 bp):   
TCGTACAGGCTTGACGGAGTTAACTGGAGGGAATAATTTCTTCTTAATCAAGAATGCCTCAACTA
GATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATAT

Left flanking sequence: Indices 487479 -- 487978
AGAACAAGCAAGATCTAGATTTCCTTTAATACAAAGAGGAAATAGCGTATAGAAAGAGAAAGTCA
GAGTAATCGGCCTTATTTATATAACCAATTGGAAGTTGGATCGGAATAGAGCTCTCGATTAGCCG
ATTTCTTTCCTTGTGATTCTAGTTCTGATCGTATCCCATAGAAAGCCTAGCGTGGGATACGTACA
CCCAAAAGCAGATACACAAACAAAGTAAAGCCGGAAATAAGGATGCGGAGCGGGAAACGGCCACT
AAAGACAGGAGTGCTTATTTGGAGTACGGAACCTGATCGAAGGAGTTGAAAGAGCTCTCGCTTAC
CAGGTATCCCGCCTGGGCAAGACTAAAGGCAAAATCCTTATTCAAAGGCGAAGCAAAGAAAAAAA
TCAAAGAAAGATGGAACCAGATACATTCTTAAAAGAAAGTGCTTTATTTCCCCATCCCATGCATT
CTGTTGGAAAAGAACCAACAAAAGTTCTCTATACTTCTTCACTAC


Right flanking sequence: Indices 488360 -- 488859
GTTGTTATGGAGATTTTTTTTTCCTTGTCATCTGGAAGCAAAACTTTCTTATTATTATCTGACTA
GTATTCGCTTCCAACGAGTTCTTTTTTTGTTGAAATGTTCTTTTTTTTTATTTCTTTTTGTACGC
GCCAGCTTTCTCCTTTTCCACAACATATCCCTGCTTTTATATCAGCCCTATTTATTTGGTATTCT
CCCATCTGAGCTCCAACTTCTCGACCACTATATGAATCAACCGCATCAGGATCCGGAATGGGTGG
AATTTGTACGACAACGTCTACAAACCCACGGACTCTCACCCAGGGAGTACGAGGTCATGGTGCGA
GACTTCCTAAATACGGAGTTATGTTTTGCAACTCGCGACCAAATTTCTGAACTCTATCGACTCAT
TTTTTATGGTCGAGAGGATCCCCAATTCTTCATTGATCCTCTCGACCTGGATTCCATACTGAAAG
TAGAGCTTGAAAGCGTCGAATTCAATCACACCGCTCTATGCCAGA



Found at i:518821 original size:127 final size:127

Alignment explanation


    Indices: 518595--518848  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     518585 GATACTGTTG

                                                                             
     518595 GTCAAGCAATTAATGTGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTA
          1 GTCAAGCAATTAATGTGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTA

                                                                          
     518660 GCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCT
         66 GCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCT

                                                                             
     518722 GTCAAGCAATTAATGTGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTA
          1 GTCAAGCAATTAATGTGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTA

                                                                          
     518787 GCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCT
         66 GCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCT

     518849 AAGTGTTCCG


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.31, C:0.13, G:0.28, T:0.27


Consensus pattern (127 bp):   
GTCAAGCAATTAATGTGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTA
GCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCT

Left flanking sequence: Indices 518095 -- 518594
AGGACAGACTTGAGCTCTTCTTCTTCCTTGGAACCTGCCGTACCAGAAAGATCTTATCATGGCGT
ATAGAATGCATCTGTTCATGAATCGGGTAGCTCATTTGGCCACGTCTTTGTGAGCTCTTCCGATT
GTTTTCCTTTGTCTTTCGCTCCAAGCTGAAAGTCGAGTGTCGGGACTGGGACTAATGAGTGCTAA
AGATTGTCATTGTCGCATATCCGCTGCTACTTTACACTGACTCAATCCTGTGTTTTACCGCGACA
CAAAATCATTATCTCAACATCTATTCGCCAACCAACCAGGTATCAATATGTATCCGGTGTGGCGT
CGTGTCGAGTATGAACATGGCTGGAAGTTACCTTTAGAAAGGGTACCTTCCGTGGAAAAACAAAA
CCTGGGCCGTATCGTCCAAATCATCGGTCCGGTACTAGATGTAGCCTTTCCGCCGGGCAAGATGC
CTAATATTTATAACGCTCTGGTAGTTAAAGGTCGAGATACTGTTG


Right flanking sequence: Indices 518849 -- 519348
AAGTGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGATA
GCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTAAG
TGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGAAAATT
TAGGTCCTGGACCCGATGTTTCAAATTGTAGCAGTTGTCCGTGTCATGACCAACTCCGCCGGAAT
GAAACTCACACCTCGAGTTGTACCATCTTGGTAAAGGATTAGGCCTTGTCCTTGGAGGGATGGAC
CTTAATGCTCTCAATTGCGGCAGAAGTTGTGACAGGGTCGAACTTTCGCACTCCTTGCTGCGACA
AGCTGTTCTCCGGCTGTTGGTACCACTGTGCTTGCTTGGGGAACCAAACCGGTTGTACCTGTGAT
GGTATGAGGAAAAAGGCTGAGTCACAGCTGGTTGAGCATAGGTTG



Found at i:518916 original size:127 final size:127

Alignment explanation


    Indices: 518785--519038  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     518775 GTTAGAGCTG

                                                                             
     518785 TAGCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTA
          1 TAGCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTA

                                                                          
     518850 AGTGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGA
         66 AGTGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGA

                                                                             
     518912 TAGCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTA
          1 TAGCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTA

                                                                          
     518977 AGTGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGA
         66 AGTGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGA

     519039 AAATTTAGGT


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26


Consensus pattern (127 bp):   
TAGCTATGAGTGCTACAGATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTA
AGTGTTCCGGTCGGTGGAGCGACTCTGGGACGAATTTTCAACGTGCTTGGAGAGCCTGTTGA

Left flanking sequence: Indices 518285 -- 518784
GCTAAAGATTGTCATTGTCGCATATCCGCTGCTACTTTACACTGACTCAATCCTGTGTTTTACCG
CGACACAAAATCATTATCTCAACATCTATTCGCCAACCAACCAGGTATCAATATGTATCCGGTGT
GGCGTCGTGTCGAGTATGAACATGGCTGGAAGTTACCTTTAGAAAGGGTACCTTCCGTGGAAAAA
CAAAACCTGGGCCGTATCGTCCAAATCATCGGTCCGGTACTAGATGTAGCCTTTCCGCCGGGCAA
GATGCCTAATATTTATAACGCTCTGGTAGTTAAAGGTCGAGATACTGTTGGTCAAGCAATTAATG
TGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACA
GATGGTCTGATGAGAGGAATGGAAGTGATTGACACAGGAGCTCCTCTGTCAAGCAATTAATGTGA
CTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTG


Right flanking sequence: Indices 519039 -- 519538
AAATTTAGGTCCTGGACCCGATGTTTCAAATTGTAGCAGTTGTCCGTGTCATGACCAACTCCGCC
GGAATGAAACTCACACCTCGAGTTGTACCATCTTGGTAAAGGATTAGGCCTTGTCCTTGGAGGGA
TGGACCTTAATGCTCTCAATTGCGGCAGAAGTTGTGACAGGGTCGAACTTTCGCACTCCTTGCTG
CGACAAGCTGTTCTCCGGCTGTTGGTACCACTGTGCTTGCTTGGGGAACCAAACCGGTTGTACCT
GTGATGGTATGAGGAAAAAGGCTGAGTCACAGCTGGTTGAGCATAGGTTGCTTGCTTTTGCGTAT
GATTCACCTTAGAAGCTGACACCATTTTCACTTCTCCTTTCTGAACTCCTTTTTGTGGTAGTCTG
TTGCTAGTAGAAGCTCCGGACTCTTGCTCGAGTAATGCTCTTACAGCTTTTGTGTCTAACAACTC
ACCAGACCAGACTTGACTTTTTCTTCTACCCTTTCTCCTACGAAG



Found at i:520643 original size:127 final size:127

Alignment explanation


    Indices: 520417--520670  Score: 508
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     520407 GCGAAGGTTA

                                                                             
     520417 TCCAGGGAAATATGTTGGTCTAGCAGAAACCATTAGAGGGTTTCAATTGATCCTTTCCGGAGAAT
          1 TCCAGGGAAATATGTTGGTCTAGCAGAAACCATTAGAGGGTTTCAATTGATCCTTTCCGGAGAAT

                                                                          
     520482 TAGATGGTCTTCCTGAACAGGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACCGCGAAG
         66 TAGATGGTCTTCCTGAACAGGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACCGCGAAG

                                                                             
     520544 TCCAGGGAAATATGTTGGTCTAGCAGAAACCATTAGAGGGTTTCAATTGATCCTTTCCGGAGAAT
          1 TCCAGGGAAATATGTTGGTCTAGCAGAAACCATTAGAGGGTTTCAATTGATCCTTTCCGGAGAAT

                                                                          
     520609 TAGATGGTCTTCCTGAACAGGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACCGCGAAG
         66 TAGATGGTCTTCCTGAACAGGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACCGCGAAG

     520671 GCTATGAACT


Statistics
Matches: 127,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  127  1.00

ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30


Consensus pattern (127 bp):   
TCCAGGGAAATATGTTGGTCTAGCAGAAACCATTAGAGGGTTTCAATTGATCCTTTCCGGAGAAT
TAGATGGTCTTCCTGAACAGGCCTTTTATTTGGTAGGTAATATCGATGAAGCTACCGCGAAG

Left flanking sequence: Indices 519917 -- 520416
GAACTCAGTATCCCCCATTCACTAAATGCATTTTGCTTACAGTCACTAGGAAAGGGGTTCTAGTA
ACGAAAGATTCCTTCTATAGGTAGGCCACATTTATCATATTCATTTCAGTGCTTTTTTTCTACCA
TTTTTGAAAGCAGGGGCAAGTCAGGCATAATGATTTCCCGGGGGGATCGTTTCCATTTACATAAT
AGTTAAGCTTCTCGCGCATTCGTGCTTGCTGTGAAAGTGATCTTCGTAATCAAGAGATGGGGCGT
TCTCTCTCCCTACTTAACTAACAAGCAATGGGGACAAAGGCCTCGAATCCTGTCTTTGACGGTGA
TCATAGCGCTGGGAAACTGATCAAATGTTTTCTGTCTCAATGTCAGTGTGAAAGTCCTAATATCT
TTACGAGGTCGAAATAGCATCACAGAAAGAGCAGCCGGAACCTACTCCCAGTTGGCCAGCATCAA
AGCAGGAGCGACACTACTAATGTGGAATACCAAGTGCGAAGGTTA


Right flanking sequence: Indices 520671 -- 521170
GCTATGAACTTAGAAATGGAGAGCAATTTGAAGAAATGACTTTAAATCTTTGTGTACTGACCCCT
AATCGAATTGTTTGGGATTCAGAAGTGAAAGAAATCATTTTATATACTAATAGTGGTCAAATTGG
CGTATTACCAAATCATGCCCCTATTGCTACAGCTGTAGATATAGGGATTTTGAGAATACGCTTTA
AGGACCAATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGAAATAATGAGATCATT
ATTTTAGTAAATGATGCGGAAAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGA
AATAGCCGAAGCTAATTTGAGAAAAGCTGAAGGAAAGAGACAAATAATTGAGGCGAATCTAGCTC
TCCGACGAGCTAGGACAAGAGTAGAGGCTGTCAATGTGATTTCCTAACTAGTTGGCGCGTTCGAA
TAATCAAAAGAAGTTCTGTTTCTAAGCCTATTTTGATAGGATTCT



Found at i:521522 original size:127 final size:127

Alignment explanation


    Indices: 521296--521550  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     521286 CCATTGACTC

                                                                             
     521296 CGGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCCGCCGTATGAAAGCAAT
          1 CGGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCCGCCGTATGAAAGCAAT

                                                                          
     521361 ACTCTAACCACTGAGTTAAGTAGGTCATTTATCATCCCAAAGATAACCAAATGGAACCCATG
         66 ACTCTAACCACTGAGTTAAGTAGGTCATTTATCATCCCAAAGATAACCAAATGGAACCCATG

                                                                             
     521423 CGGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCCGCCGTATGAAAGCAAT
          1 CGGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCCGCCGTATGAAAGCAAT

                                                                          
     521488 ACTCTAACCACTGAGTTAAGTAGGTCATTTATCATCCCAAAGATAACCAAATGGAACCCATG
         66 ACTCTAACCACTGAGTTAAGTAGGTCATTTATCATCCCAAAGATAACCAAATGGAACCCATG

             
     521550 C
          1 C

     521551 CATCGATGGA


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27


Consensus pattern (127 bp):   
CGGTATCTAATAAGTTCTACCTACTATTGGATTTGAACCAATGACTCCCGCCGTATGAAAGCAAT
ACTCTAACCACTGAGTTAAGTAGGTCATTTATCATCCCAAAGATAACCAAATGGAACCCATG

Left flanking sequence: Indices 520796 -- 521295
ATTGGCGTATTACCAAATCATGCCCCTATTGCTACAGCTGTAGATATAGGGATTTTGAGAATACG
CTTTAAGGACCAATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGAAATAATGAGA
TCATTATTTTAGTAAATGATGCGGAAAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACT
CTTGAAATAGCCGAAGCTAATTTGAGAAAAGCTGAAGGAAAGAGACAAATAATTGAGGCGAATCT
AGCTCTCCGACGAGCTAGGACAAGAGTAGAGGCTGTCAATGTGATTTCCTAACTAGTTGGCGCGT
TCGAATAATCAAAAGAAGTTCTGTTTCTAAGCCTATTTTGATAGGATTCTGTCGAGTGAATCCAA
TCAAGCAGAATCCTATTTTGCTACAACGAAAATAAAATAAATAAAAAAGATACAAAATCAATAAA
AATAAAAGAGGGTGGGTCGAAAAACTTATTAGGTACCATTGACTC


Right flanking sequence: Indices 521551 -- 522050
CATCGATGGATTCTAAATATCATATTACTTATGAGCAATACTAATACAAGCAATACCACTCAAAA
ATTGAGGATGTTGGATCATAGAATATTCATCTTGACAAGAAATTATCTACATGATAAAATATGTA
TCACAAGCACTAAGGGCTATAGCTCAGTGGTAGAGCGCGCCTCCCACTGGGGGCCCGCTATGCCA
AAAGCGAGAGAAAATCGCATTGGGAGTAAGGCGTGGGAACGAGACCGAGACCCTATAGTAGAAAA
TTCCTGACCTTAGTTGCGTTTTACGCGTATTTATGGTTTCGACTGGCAACAATGGGTCGAGTAAT
TTATTATAGTGATGGTCTTGCCGCTAGGGAAGACGTGGTATGGTATTAGGGCTTCGGGGCGCATA
GCTAACCTTGTCTCGCAAACCGCTTTGTCCCTCACCTTTCTTTGCCAACTTATCGCTTAGCTCCG
TCTCCAGCAGATAAATGCAAAATTTCTGCTTTTTCTGACCTTGCT



Found at i:530540 original size:127 final size:127

Alignment explanation


    Indices: 530185--530565  Score: 644
    Period size: 127  Copynumber: 3.0  Consensus size: 127

     530175 TTCAATCTTA

                                                                             
     530185 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
          1 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA

                                                 *      *  *        ***      
     530250 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCCCGA-A-GTAGTTGGTATTTCAATCTT-A
         66 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCT-CCGGAGAGGAAGCT-GT-TTTTTGT-TTGA

             
     530312 -
        127 T

                                                                             
     530312 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
          1 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA

                                                                          
     530377 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT
         66 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT

                                                                             
     530439 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
          1 TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA

                                                                          
     530504 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT
         66 CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT

     530566 GGAAAGTTCG


Statistics
Matches: 244,  Mismatches: 6, Indels: 8
        0.95            0.02        0.03

Matches are distributed among these distances:
 125    2  0.01
 126    9  0.04
 127  229  0.94
 128    4  0.02

ACGTcount: A:0.31, C:0.15, G:0.12, T:0.41


Consensus pattern (127 bp):   
TAATAATCAGAATACGATCGACGATCATTTTCTTTTGTTAATAAAATAATAATACAATCATCGTA
CTTCTTTTTAAAACTTTTAGCTATTTGCTATTCTCCGGAGAGGAAGCTGTTTTTTGTTTGAT

Left flanking sequence: Indices 529685 -- 530184
TGGGTTCGGGCATTTCTGTTGGGTCAATCACTGGTGAAGGCTTACTCTTCGGGTATAAGACATAA
TAAGAAAACCTCCCTGAAGGTTCCCTAAGTAGGCCAACCTCTGGATCATGGTTTTCATATCTTTC
CCGCAACCTCTGTTGGGAGGACTTCTTCTTCTTTGGCTTGGGTATGTTACCCTCTAATGCATCCC
AATAACAATCCTCACACTCGCAGATATCCCACCATGAGTGCCCAGATCTCGTCCATCCATCGGGC
AATGAGACTGGCGGGAGGCATTGGTCAGGAGGTGTGGTCCCTCTGCAGCGCATTTATTTCCAGGT
TAACAATAGTCTGCCGTAAAAGTTCTATCTCCTCAACCTTTCTCTGAATGACTCGAACCAGGCGG
GCCTTTTCTTCTTCTGCTTGTGACAGAGGATCTCCGATGTTTTGATCTACTTGAGTGTTTTCTTC
TTCTCTTCTAGGTTCCCCACCGAAGTAGTTGGTATTTCAATCTTA


Right flanking sequence: Indices 530566 -- 531065
GGAAAGTTCGCTTCCCCGTGATTTGACTGGTTTCCAAATGGTTCGTTTATTCTTTTGAAAGGCCA
TGCCCCCCCACTAACGTATCTTCAATGCGCAGCCGGGTTATCTTGATGGAGCTCTCCCAGCTCCT
CCTACCTATTTTTAGGGGCTTTTTGTCTCAGATGATGGCAAGCACTATGAGATAAGGGATCTCTC
GGGTCCCTAATCAGGCATATGCAGCTTGGGTTTCCAACGATCAGCTTTTTTTGTTAGTTAATGCC
TCTCTTACAACAGAGATTCTGGCTCAAGTGATTGATCTTTCTTCAGTCAAGGGATGCGGCATCTA
CGCTCAAGAATCGCAAGTTTAATGCAGCTTCGACTCCAGAATAGAAGACCCACTACTATTACTAT
TGATAGTCCTGCTACTAAAAAACTTTACTCTTTTCTTGACATTGATAAGATAACATTCTCGAATG
AGATAAATTATATGACCATTTTTATGTATACAGAATGCCTCTTTC



Found at i:534018 original size:21 final size:21

Alignment explanation


    Indices: 533992--534055  Score: 119
    Period size: 21  Copynumber: 3.0  Consensus size: 21

     533982 ATTTTTTCTC

                                 
     533992 AATCAATCATGTCTCAACTAG
          1 AATCAATCATGTCTCAACTAG

                                 
     534013 AATCAATCATGTCTCAACTAG
          1 AATCAATCATGTCTCAACTAG

                           *     
     534034 AATCAATCATGTCTCCACTAG
          1 AATCAATCATGTCTCAACTAG

             
     534055 A
          1 A

     534056 TAAATTCACT


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  21   42  1.00

ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28


Consensus pattern (21 bp):   
AATCAATCATGTCTCAACTAG

Left flanking sequence: Indices 533492 -- 533991
CAATCATACTCAAAATCAGAATTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACA
TGCAAGTCGAACGAAGTGCTCTTGGACGACTCTTTAAATTCCGTTAAGTAACTTAGTGAGTGCTT
TGGCTTGGAAGAAGAAAATGAAAACAAAGAAAGATTCTTAGGTGGACAACTAGACTTTTGGGATG
GGAGGGAGCTCTGATTTATTTGTGCTTTTGGTGATCTTGAAATGTTTTAGAAAATAATGTGAGTT
TTCGGGATGCTAGGCTGTTCCTCTTTCTATCTATATCTTCTTTCCACCTAGGGTAGGGCAGCTTT
CTACCCGCACTTGGACTTTCATTCTTAGCCGCGAACCCCTCTGGTTGGCTACCAGCTCTTGGGGT
TCTTTATCGCTTCTCCCATGCATTTCGTTGGTCAACAACCAACCCTCTTTATAGTTCTTCACTAC
TCCTACAGGCTTTACGGAGTTAACTGGAGGGAATAATTTTTTCTC


Right flanking sequence: Indices 534056 -- 534555
TAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTACTCTTTACTTTCTATATTGCCA
TATGCAATGAGGGTGGTAAAAAAATAATAAACTCGTCCTCTTCCAGTCAAAGGACGCAACTGGAA
AGGAGGGAGAGTAGTATAGTCAAATTTGGGGTTGGGGGTTCGGGGTCGGATGATGACGATGACCC
TAACAAACGGAGATATAAAGCCGTTTCGAAAACCTGCATAGACGCAAGCATTTCCTTAATTAGAG
AATTGAGACTCAATCTAGTAGTAGACACTACTAATGAGAATTTGCGTGCTGGTCTTTCAAATCCG
AGCACTCAGAAATGGAATTCGGCTATAAGAACCGCCCTTGAGGAGCGGTTTGGTCATTCTCGATA
CAATTGGAGACGCATAGCCCACTTCCTCATTGTTAGTAGTGAACTAACAATGGAAGGCGAGCAAA
GCCCATTTTTTCTTAGAGTTCTAAACTTGGTTAAAGAACACTAAG



Found at i:551210 original size:127 final size:127

Alignment explanation


    Indices: 550984--551239  Score: 512
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     550974 ATAGTAAGGC

                                                                             
     550984 CTGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTC
          1 CTGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTC

                                                                          
     551049 ACCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGG
         66 ACCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGG

                                                                             
     551111 CTGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTC
          1 CTGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTC

                                                                          
     551176 ACCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGG
         66 ACCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGG

              
     551238 CT
          1 CT

     551240 ACTCCCCGAA


Statistics
Matches: 129,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  129  1.00

ACGTcount: A:0.18, C:0.21, G:0.27, T:0.34


Consensus pattern (127 bp):   
CTGGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTC
ACCTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGG

Left flanking sequence: Indices 550484 -- 550983
TAATCAATGAACCCCCGAAACCTACTTTCTTTTCTGACAAAATCAACCAAGCCTAAGCGGTCACG
ACATCTTGTTAATATTGATTGAGTTGGAGGGACTTTCGCTGACTGAATCCATCCATAAACCTAGA
CCCCGGTAACCTTTGTTACCAAAACGTCACGACAACATCCAAAGGCCACCTTTGGATTCTTAAGT
AGGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCACTAGTGGCTGAGAGAAA
GCGAGCAGCACCTTGTATAGGTTGGGCGGAGCTTGAAGAAGCGAGCCCCTATCAGAGAAAGCCAT
TGCGCGCTAGCCTAGCTAGCTAACTTCAGCTAGCTGTTATGTTCGTTGTAGCGCGCCTTCCCTCC
TTCTCTCACTTCGGAAAGATTTAGCAGTCTTTTTGATGACCTGGTCGAGAGAGTACGATACATCG
GCGTAAAAGATTGAGTTGGATCTGTGAGGTTGGTTATAGTAAGGC


Right flanking sequence: Indices 551240 -- 551739
ACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAATCCTTCCTTGCTCG
TTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGCATGGGAAGCGGGCTACT
CCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAATCCTTCCTTGCTCGTTC
CTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGCAGGCAGTCAGTACATACAGT
ACAAGTAGGAAAAACATAAGTCCCCGAAGGAATGAGATGCAGTTCTTTAATCATTCCAGTCAGAA
ATGTCAGTCCGAAATATTTTATTTGATTCAGAGCTGGAAAGGAGGAAGACTGCACGCCGCTCCTT
TACTGGATTGGCTAACCCAAAAGATCTTTTTTTAAGATAGGGAGCCTGCTGAGCAAACCGGCCAT
CTTATATAGTATAAGCCGGGAAATGGGTTCTGAGCCTCTCCTCTA



Found at i:551479 original size:127 final size:127

Alignment explanation


    Indices: 551226--551480  Score: 510
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     551216 CTATTGAGTA

                                                                             
     551226 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA
          1 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA

                                                                          
     551291 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC
         66 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC

                                                                             
     551353 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA
          1 ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA

                                                                          
     551418 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC
         66 TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC

             
     551480 A
          1 A

     551481 GGCAGTCAGT


Statistics
Matches: 128,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  128  1.00

ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24


Consensus pattern (127 bp):   
ATGGGAAGCGGGCTACTCCCCGAAAATGCCCCGCCCGTAGGTTCCTTTGTCGTTGGGGCTCAAAA
TCCTTCCTTGCTCGTTCCTAGGAACTCAGTAACGTGACCAGTAAGTCAACGGGCATTGAGGC

Left flanking sequence: Indices 550726 -- 551225
ACTAGTGGCTGAGAGAAAGCGAGCAGCACCTTGTATAGGTTGGGCGGAGCTTGAAGAAGCGAGCC
CCTATCAGAGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAACTTCAGCTAGCTGTTATGTTCGTT
GTAGCGCGCCTTCCCTCCTTCTCTCACTTCGGAAAGATTTAGCAGTCTTTTTGATGACCTGGTCG
AGAGAGTACGATACATCGGCGTAAAAGATTGAGTTGGATCTGTGAGGTTGGTTATAGTAAGGCCT
GGCCGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCAC
CTTTCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTAATGGGAAGCGGGCTGGC
CGGAAAGTGTTCTTGCCTCTATCATTAGCTCGGGTAGTCGTCGTTTCTGGTGTTTTAGTCACCTT
TCAATGGCTCCCTTAATTATGTGCGAGGAATTGCCCTATTGAGTA


Right flanking sequence: Indices 551481 -- 551980
GGCAGTCAGTACATACAGTACAAGTAGGAAAAACATAAGTCCCCGAAGGAATGAGATGCAGTTCT
TTAATCATTCCAGTCAGAAATGTCAGTCCGAAATATTTTATTTGATTCAGAGCTGGAAAGGAGGA
AGACTGCACGCCGCTCCTTTACTGGATTGGCTAACCCAAAAGATCTTTTTTTAAGATAGGGAGCC
TGCTGAGCAAACCGGCCATCTTATATAGTATAAGCCGGGAAATGGGTTCTGAGCCTCTCCTCTAC
TACCAGCGGCCTGAGTTCTCCACGTTCCGATCACCAGCACTTAGTTCCTCTTGACTATGCAATTA
ACTCAGTTTGATAAGCCTACGTCTTATAGACCTAGGACTACCATAAGCAAGCCTTTCAGGACTTC
GATCAAGATAGGGAGTTCGCCCCAGAAGACAGTAGTACAGCTTTCGGAATCTGTAGCTCCTATGG
TAACTAGCTCCTTTCGTCACTGGTGACTGCCCCCCTCTCCGTCTT



Found at i:563108 original size:127 final size:127

Alignment explanation


    Indices: 562882--563137  Score: 512
    Period size: 127  Copynumber: 2.0  Consensus size: 127

     562872 TTCCCTGTAC

                                                                             
     562882 TCAAAGTGAATTGTCTAAGTGCTCTCCTTTGTCTCATTGTCTATCTCGTAATCATTCGATTCCGC
          1 TCAAAGTGAATTGTCTAAGTGCTCTCCTTTGTCTCATTGTCTATCTCGTAATCATTCGATTCCGC

                                                                          
     562947 CTCTACAAAGGCTAGCTCCTACTCCTCCTCCTTCTCTTCCTTCATCGTCGTTGGTCCTTCGT
         66 CTCTACAAAGGCTAGCTCCTACTCCTCCTCCTTCTCTTCCTTCATCGTCGTTGGTCCTTCGT

                                                                             
     563009 TCAAAGTGAATTGTCTAAGTGCTCTCCTTTGTCTCATTGTCTATCTCGTAATCATTCGATTCCGC
          1 TCAAAGTGAATTGTCTAAGTGCTCTCCTTTGTCTCATTGTCTATCTCGTAATCATTCGATTCCGC

                                                                          
     563074 CTCTACAAAGGCTAGCTCCTACTCCTCCTCCTTCTCTTCCTTCATCGTCGTTGGTCCTTCGT
         66 CTCTACAAAGGCTAGCTCCTACTCCTCCTCCTTCTCTTCCTTCATCGTCGTTGGTCCTTCGT

              
     563136 TC
          1 TC

     563138 GTAGTGGTCA


Statistics
Matches: 129,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 127  129  1.00

ACGTcount: A:0.16, C:0.32, G:0.14, T:0.39


Consensus pattern (127 bp):   
TCAAAGTGAATTGTCTAAGTGCTCTCCTTTGTCTCATTGTCTATCTCGTAATCATTCGATTCCGC
CTCTACAAAGGCTAGCTCCTACTCCTCCTCCTTCTCTTCCTTCATCGTCGTTGGTCCTTCGT

Left flanking sequence: Indices 562382 -- 562881
TGCAGTCTCTCCCTTGGCCTTTGGAGAGGAGAAGGCAGAGAAGAAAACGTCCTTCGCGCAAGTTT
TTTTGCTTTCTGCGCCCTTACTAGTACTAGTAAAGGGGCTCTTCGAAAAAGAAGGCATTCTGGTG
GGAAGGCCGACCACTACATAAGTCGCCATCAGTCTAGGAGAGAAGCAAGCTACCTTTCTTTGATC
CACCTTCCCGGGCAGGGAAGAGAACGCAAATGGACCGCGGATGGTGGTCGTGGTAAATTCCAGTA
TCTTACGCTGCGGAGCGAACTCTTCTATCGTCTTGCATTTCCTCTGGTGGGCCCCCCCTTTCCAT
CGTACTGGAGCGATTTGAGAAGAACGATTAGGGTCATATTCTATCCTTTCTACAATGCCCATAGA
CGAAGTGCTTCGTTTCAGATCAATTCTTCGCTGCAATCGCTTCGACCCACCCCCTCGGTGAAAAA
CCGTAATACGTCCTGAAGAATTCCTACCAGCAGACTTCCCTGTAC


Right flanking sequence: Indices 563138 -- 563202
GTAGTGGTCATTGTATAGTGAGAAAGCTCCCCCCTGCCTTTAGATGAGAAAGCCCTCTTTTACAT


Done.