Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058584
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 281175
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Found at i:17994 original size:14 final size:14
Alignment explanation
Indices: 17975--18001 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17965 CTTTCCCCCT
17975 TTTCTTTTTCTTTA
1 TTTCTTTTTCTTTA
17989 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
18002 TTAGGCATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTTTCTTTA
Left flanking sequence: Indices 17475 -- 17974
GGGCCTTACTTATTCAGGGGGGTGGGGGAACCGTAGGAAGGGGGGACGAACCGCCGAATTTACAT
CTGAAATCGCCAACATGAACACAAACGAAATCTTTAATTTCGTATAGAAAGAAAACGAACCACTT
CTATTCTCGGAGCCCACGGAGCGGTATATGAAGAATGGCTTTTTGGTCCCTTTCGTCCAGTGGTT
AGGACATCGTCTTTTCATGTCGAAGACACGGGTTCGATTCCCGTAAGGGATAGGTACTCATTCCC
GGCCGCTTTCAGTTAGTGTTCATTGCTGAGTGATCGCTCGCTATCTGGCTGGAAAAGGTGGTCCG
GAAGCTTCCTCTCTCCCAGCAAGCAAGATGAGATCACCACTTCTCTCGGACTTCCTTTACTTCGT
AACCTTAGCTTTAGATGTCCTTTCATAGATTCTCGAACCTCCGACAGACATAATATCCATGCATG
CGTTCTTTCTCTCCTCCCCTCAGCCATAGAGTCATCTTTCCCCCT
Right flanking sequence: Indices 18002 -- 18501
TTAGGCATTGAACCCCGCCGCTCCGTGGGGTGCTGAGTGGTGTCCTCCCCTCCCTAATACCTAAT
ACATAGTTCCGTCTATGGAGCCTAAAGCTTCAACCATGGCATAGCAGTAAGCAGTAAGTTGGCCT
AGTCTCTCGCCCAGCCTTCGCCTTCTTCAGTGGCCAAGTTGAAGCGTTCACCGGTTCTTCGGCCT
ACCACCTTGATCAAGGTTGAGCTTGTTTCATTGAAGCTAATGCTATGCTGCCCTTCCCTTGTTCA
AGAGAAAGCGAGGACTTTCTTTTAGCTACCGGCCCAAACAAAAGAGATTAGCCTCTTGATCGATC
GATTGATTGGATCGAAGTACGAAGGGCTTGATTGAAGTGTGAGATCAGCCCAAGACTAAGGCCGA
GCAACTAGCTGCTGCAGGATTGGACGTCTATCTATCTCACCACGCTCCCCTACTCCTATAAAGGC
CGGCAGAAGGAAAGCTCGTTACCGCAGCGCTCGTTCACCCCTTCG
Found at i:23683 original size:39 final size:39
Alignment explanation
Indices: 23628--23706 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
23618 CCCATCCTTC
*
23628 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
23667 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
23706 A
1 A
23707 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 23128 -- 23627
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
CGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAAGAGCCCCATTAAGTAAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 23707 -- 24206
TAGAAAATCGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGATCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:33292 original size:1 final size:1
Alignment explanation
Indices: 33286--33332 Score: 76
Period size: 1 Copynumber: 47.0 Consensus size: 1
33276 AGGAAATTTC
* *
33286 TTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33333 AAATAAAAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.04, C:0.00, G:0.00, T:0.96
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 32786 -- 33285
TTTACTTTTTTGAATGCAGTTCGGGATCGAACGAGGTTCTTAAAAAGAAAGGCTATTCATCTTCC
CTTACGGGCTTATGGATCTAGTGGATCGTCCCAGTAAACTACTACTTATACTAATTATACTAACT
ACTTAGTTATCGTCACTGGCTGCAGATCTGGCTTGGCTCGATAGCCTATTGAATAGGATGGAGGA
AGCCTTGTCCCTAGCTTCTGAAACAAGAGAACGGACCGACTCTAACTAATCCACTCCTACTAACA
GGAAGTGTAAGGGCAGACCTCGTCCTACTTTCACTCTACTTTTTCCATTTCAATGCTAGCTCGAT
TGCAGCTAGATTTCTCAGTAGGGACTACTAATGGACTATCAGAAACGAAGTGAGGGATTGGACGA
CGGACGGGACAACTAGCTAATTGGGGGACGGAGGGACAGAGAGAACTCTTCAACGAAAATCAATC
TTGAAATTAAATAATAATAATCTCTATCGTTCAGTAGGAAATTTC
Right flanking sequence: Indices 33333 -- 33832
AAATAAAAGATAGAATCGTTCAGTAGGCTAATCTTCAAAGTTTATCGATTGAGACAGCGGCAGGC
CCAAAGAGCTCTACAGTAGTGCCTTGCGAGATCGTAGCTCGTTCACCTAAGATGGAAAAGCACTT
GGTTGAAAGCCTAGCAACGAGAAAAAAGAGTCCCATGCATCCTTTAGTCAACAACCATTAGTAAA
GAATAGGATCAGACCAAGTGCGAGATTGGATCAAAAATAACGTATAGAAAGGATTTGCAACAGAG
AGCCTCAACAGCAGCTCTTAACCCACACTTTTTGCTAGTCAATTGCATTTCAAGTTCCCGCACAG
TTGATCCAGCAAAAAATAGAATCTAGTCTCCGTGAGTCTATACCAATATTACACTTTCTTTAAAT
ACTTTTTTTCTATAGGTTATGTTATAAGGAAGCCGAATTTCCTAGGAAGAGAAGCGTGAGGAAAA
AGAACAGGGAATAAAGGAGAAAAGGAGGATTGAAGGGGACGTGTA
Found at i:36013 original size:5 final size:5
Alignment explanation
Indices: 35988--36036 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
35978 AATGAATAAA
* *
35988 AAAAG AAAAA AGAAAG AAAAAG AAAA- TAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG A-AAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
36037 CTGGTTCACG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
4 3 0.08
5 26 0.70
6 7 0.19
7 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAAG
Left flanking sequence: Indices 35488 -- 35987
TCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCCAACCAC
ACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGG
AGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACAGAA
CTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGAATT
CTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGACAGACCG
GGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATATCCGAA
TTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCCTCC
CCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAATAAA
Right flanking sequence: Indices 36037 -- 36536
CTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGGACTTATTCA
TGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGGTGGTTTATT
GGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCTGCTCAAACT
GCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGTGATGAAAAA
GGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGACCGTTCGACG
ATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTATTCTCTATCA
ATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAGTTATAGAAG
CGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTG
Found at i:36018 original size:15 final size:15
Alignment explanation
Indices: 35982--36027 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
35972 ATCCGGAATG
*
35982 AATAAA-AAAAGAAAA
1 AATAAAGAAAA-AGAA
*
35997 AAGAAAGAAAAAGAA
1 AATAAAGAAAAAGAA
36012 AATAAAG-AAAAGAA
1 AATAAAGAAAAAGAA
36026 AA
1 AA
36028 GAAAAGAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 9 0.33
15 14 0.52
16 4 0.15
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (15 bp):
AATAAAGAAAAAGAA
Left flanking sequence: Indices 35482 -- 35981
ATCACTTCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCC
AACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTA
TCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTA
ACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAA
CGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGAC
AGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATA
TCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCAC
TCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATG
Right flanking sequence: Indices 36028 -- 36527
GAAAAGAAACTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGG
ACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGG
TGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCT
GCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGT
GATGAAAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGAC
CGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTAT
TCTCTATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAG
TTATAGAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCT
Found at i:36018 original size:19 final size:17
Alignment explanation
Indices: 35985--36032 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 17
35975 CGGAATGAAT
35985 AAAAAAAG-AAAAAAGA
1 AAAAAAAGAAAAAAAGA
36001 AAGAAAAAGAAAATAAAGA
1 AA-AAAAAGAAAA-AAAGA
36020 AAAGAAAAGAAAA
1 AAA-AAAAGAAAA
36033 GAAACTGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.07
17 6 0.21
18 4 0.14
19 16 0.57
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (17 bp):
AAAAAAAGAAAAAAAGA
Left flanking sequence: Indices 35485 -- 35984
ACTTCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCCAAC
CACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCA
AGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACA
GAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGA
ATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGACAGA
CCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATATCC
GAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCC
TCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAAT
Right flanking sequence: Indices 36033 -- 36532
GAAACTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGGACTTA
TTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGGTGGTT
TATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCTGCTCA
AACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGTGATGA
AAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGACCGTTC
GACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTATTCTCT
ATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAGTTATA
GAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAA
Found at i:36033 original size:15 final size:14
Alignment explanation
Indices: 35985--36036 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 14
35975 CGGAATGAAT
35985 AAAAAAAGAAAA-A
1 AAAAAAAGAAAAGA
* *
35998 AGAAAGA-AAAAGA
1 AAAAAAAGAAAAGA
*
36011 AAATAAAGAAAAGA
1 AAAAAAAGAAAAGA
36025 AAAGAAAAGAAA
1 AAA-AAAAGAAA
36037 CTGGTTCACG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 4 0.13
13 10 0.33
14 9 0.30
15 7 0.23
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAGAAAAGA
Left flanking sequence: Indices 35485 -- 35984
ACTTCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCCAAC
CACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCA
AGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACA
GAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGA
ATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGACAGA
CCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATATCC
GAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCC
TCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAAT
Right flanking sequence: Indices 36037 -- 36536
CTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGGACTTATTCA
TGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGGTGGTTTATT
GGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCTGCTCAAACT
GCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGTGATGAAAAA
GGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGACCGTTCGACG
ATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTATTCTCTATCA
ATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAGTTATAGAAG
CGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTG
Found at i:36083 original size:24 final size:24
Alignment explanation
Indices: 36038--36083 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
36028 GAAAAGAAAC
* *
36038 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
36062 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
36084 AGAAAAAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 35538 -- 36037
ACAGAATCCAACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAAC
TTCCAGCTATCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACT
AAGAACCTAACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCT
AACTATCAACGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGG
TATAATGACAGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGT
ATTCTGATATCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTA
TAATCTCACTCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAATAAAAAAAG
AAAAAAGAAAGAAAAAGAAAATAAAGAAAAGAAAAGAAAAGAAAC
Right flanking sequence: Indices 36084 -- 36583
AGAAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAA
GGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACA
CCGTTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACG
AGCGGAAGTGATGAAAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGG
AATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTGGA
GAGATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACT
Found at i:47623 original size:16 final size:16
Alignment explanation
Indices: 47598--47637 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
47588 TACATCGTAG
47598 CGCA-AAAGAGCATCC
1 CGCAGAAAGAGCATCC
*
47613 CGCAGAAAGAGGATCC
1 CGCAGAAAGAGCATCC
47629 CGCAGAAAG
1 CGCAGAAAG
47638 TTTCCACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.40, C:0.28, G:0.28, T:0.05
Consensus pattern (16 bp):
CGCAGAAAGAGCATCC
Left flanking sequence: Indices 47098 -- 47597
TGCTAAAATTCCAGCTTCAAGCGTTCTGCAGCTCATAATCATATTATGGAAAATGAGGCGTGGGA
AAACGGCACCGATTCTGTCCAATAACACAAAAAACTTATTTTTAAGTCCTTCGGCCTTCGCAAAC
AAACAGCCCGGCCAACCCAAGTAATCCCCCATAACATCAATCAGTACCGCAAAAGGCTCAAAATC
TAAGTCTCCAGCAGCTGCGGAGCGGGGGATAAAGGAACAGCAGGATTACAACATTGCACAGGATC
AATCAGAATGCGGGAGCGCAGAGCCTTTAAGAGATAGGGGGTGCGGGAGCATAATATAAAGACTC
AAGATTCCCCCCGGTTTTTCATGCAGATTTGACCATGGTGTGCACCCCCCTTAACTTAACCCCTA
TTATGTAAGGGGGACCTTCGGCGGGATAAAAGAGAGTGCGGGAAAAGCAGCTACAGATACAGGAC
AAAAGAAGGAGTGGCGCACTTAAAGAGTAAAAAAGTACATCGTAG
Right flanking sequence: Indices 47638 -- 48137
TTTCCACCTTTCTGTCCAGCTGAAAAATGGAATGCAATAGTCTAAGATGCTTAATAGCTCCAACA
AGCGCGAAAGCCGTTGCTTCTTGCTTTCGAGCCCAAGCCTACGTTTGCTTAGTAAGGTTGCTTCT
TTTTATATCTCCTCAAAAAAGTAAAGGCGCGTTAGCGCTTTTTATTTATTTTCTTTTTCAATAAG
GGGCGGAGCTTGAAGAAGCGAGTCTATCAGAGAAAAAAGTGCTAGTTGTAGCGCGCTAGCGCACA
TTTGACTAAAAACATGGAAAGTCAAGGCTCTGGGCAACGAGTGGGAGGGAGCCTTGACTTGAAGC
ATTGTACAAGTGCTTAAGGCTCCTTCGGGCCATGGGCACAACTATCATATAAGGCAAGGCTTGGA
AGCAAGCTACCAGCGCCTATCGGCGGGAACTGGGCTTGTCTTGGTTAGTAGTGCCCGCCCATTCT
GTCTCGCCTGCCCGCCGACCCATGAATTCTTCAGAGCGGGCCGGC
Found at i:52092 original size:21 final size:21
Alignment explanation
Indices: 52068--52114 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
52058 GGACGCTGTT
52068 GAAGAGGCAGCGGAAGCCGCC
1 GAAGAGGCAGCGGAAGCCGCC
*
52089 GAAGAGGCAGCGGAATCCGCC
1 GAAGAGGCAGCGGAAGCCGCC
52110 GAAGA
1 GAAGA
52115 AGGGAAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.40, T:0.02
Consensus pattern (21 bp):
GAAGAGGCAGCGGAAGCCGCC
Left flanking sequence: Indices 51568 -- 52067
CGAGTAGTGAAGAACTAAACGATTTTGTTTTGTTGGTTGTTGACCAACGGAAAGAAAGGGATTGT
GTCAACTTTGTTCCTTCATCTTTCTATTTTGATTCTCTTTTTCTTTTTTATATTGTGTAAGGCAA
AGCGCATTCCTTTAAGAATGTATCTGGTTCCATTTTTCTTTCGTTAGTTCAGCAGCTACTAAACT
ACGACGCTACCTTGCTGAACTCATCCAGCAAATACAGTAGCTCCTGGAATCTCAAACTATCAATG
CTATTTATCAGAATATCGTAGTAGGTTTCCCTAAGAAAGCCGGGCTTAAAATGAATAATGTTATT
CCCATATAATAACCGAACCGCTTCATCCCCAAAGGTTCTCTGAATAGCTTCAGGCATGGTCAAGC
CCGGTGGTAATACCATCCCGGCTTCACGCAAAAGCCTGCCGCACTCATTACCTATTTCTTGGTAT
AATTGGAAAAAGTCAAGTGGAGCGCTTCGCGCGTCGGACGCTGTT
Right flanking sequence: Indices 52115 -- 52614
AGGGAAGGAATCCCAATCCGTCTCCATGAGAGCGTCCATCTCACTCCTTCGTAGTACGAGTTGTC
TACTGGTAATCATTTGATCTGTTTTCATTTTCTGTGTAAAAATTAGGAATTCCTCTTCCAACTCG
TCCCAGAATGGGCGTTATGGCAAAGAACAAGAAGAAAACAAAAGGAGAGATTTGTCCAATAGTCA
CAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAGTAGTAAGCGATCCGCCAAAAGCAAC
CAAAATATTCCTTGGTGAATCGGGCGAAAACTTGAACTACGTACATACATACTTTTAAAAAAAGG
TAAAGCCAACAGACATATAAAAACTGGTGCTATTGCGGCTACACCTCCCGCTTTGTCAGGTATAC
TACGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGGTACAATATGAGGCGGGGTGGGCATC
GGATTAGCAGGTATATAATTGTCGGGATGCCCCAAAACATTAGGA
Found at i:54682 original size:45 final size:45
Alignment explanation
Indices: 54614--54739 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
54604 GGAGAAAAGG
* * * * ***
54614 AGGTGCATACGATCTCGTGCAATCATACGATCTTCCCTTTTTTTA
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
54659 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
54704 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCC
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCC
54740 TATAAAGAAG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (45 bp):
AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
Left flanking sequence: Indices 54114 -- 54613
CAGAGCATTGATTGCACTACGTACACTAATTCACAAACCTCGTGTGGGGCTAATCGTTTTCATTT
CCCATCTAAGAGAACTCAGAAGAGAAAGAAAGGTTCGTGTAACACAACTGGGAGTTCTATTACTT
AAGATGGTGTCCAGCTCCAGACTATATTTAGTCAGTTGCTTTCGCATCCTTACTCGGTGTAATCA
AGGCCTATTCGAAAGCTGCCTATGCGGTGGGTTTGAATCCCACAGGAGTGAAATAGCTTGGTTTC
TCACATAGACTTTAGTGAGTAGTGAGCTGCTTGAGATAGGGCGATGCCGTTTGCTTGCTAATGAG
TTCGGTAGCAGCCTACTTTCTATAAGGAAGTGAAAACAGGCTTGTGAAAGGAAGCTACCTACCTT
CGAACCGAGATTTCTTCTCTATACAATAAAAACTAGTACATGAAAATTGATAGGGAAAGTACACG
GGGCACTCACTTACTTATCTATTGCCCGGAATAAAGGAGAAAAGG
Right flanking sequence: Indices 54740 -- 55239
TATAAAGAAGCCAATTTGACGCATATTTCACTTGCTCTAATGAGCCGGCTAAAACTCTGTTTCCG
TTACAGGTTCTATTATTTTCTAACTCCTTGGTGTCTCGTACCTTGACTTTCGCTACCTATACCTA
GGCTTTTCTGCCTTTGTCTTTACGACCTTGGCTCTTTCCGTTCTCTGAGGTTCTTTCTATCTCGT
AAGAGGTAAGGCTTTCCCGTCTTTACTCCCTGGGAAGCTAGACTTTCTTCTCTACTCATTTTGGA
GAGCTAATCTGACTTCTATCTCTTCTCAGTTCTCTAGGGAAGGTAGGGATTACTTGAGCTTACCC
ATCACTTCATCATTCTATTTCCAGGGGATTCCTAAAGAGTAGAAGGAGTGCTTACTGATAGGCTA
ACTTCACTCCTTTCACATTTAAAGTAGCTGCGGGCACCCGACTTTCTGCTTTCTCACAAGATCTA
AGTCACTAGTAGTATAGCCGGTCCTCTAAGCAAAGGTTACCTAAA
Found at i:55480 original size:31 final size:31
Alignment explanation
Indices: 55445--55524 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 31
55435 TAGATAAGAA
*
55445 AAGGATGCGAAAGCTACTGACTATAGAGAGT
1 AAGGATGCGAAAGCTACTGACTATAGAGAGG
*** ** * *
55476 AAGGATGCTTTAGCTACTTCCTATATATAGG
1 AAGGATGCGAAAGCTACTGACTATAGAGAGG
*
55507 AAGGATGTGAAAGCTACT
1 AAGGATGCGAAAGCTACT
55525 AACTTATATT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (31 bp):
AAGGATGCGAAAGCTACTGACTATAGAGAGG
Left flanking sequence: Indices 54945 -- 55444
GCTTTCCCGTCTTTACTCCCTGGGAAGCTAGACTTTCTTCTCTACTCATTTTGGAGAGCTAATCT
GACTTCTATCTCTTCTCAGTTCTCTAGGGAAGGTAGGGATTACTTGAGCTTACCCATCACTTCAT
CATTCTATTTCCAGGGGATTCCTAAAGAGTAGAAGGAGTGCTTACTGATAGGCTAACTTCACTCC
TTTCACATTTAAAGTAGCTGCGGGCACCCGACTTTCTGCTTTCTCACAAGATCTAAGTCACTAGT
AGTATAGCCGGTCCTCTAAGCAAAGGTTACCTAAATAGCTTCTTCTAACCACTCCCTAGTTCTCT
TTCATCGATTGATATGGGAATAGCAAGCAACCCCTCCACTTCTATTTATTATAGGGAATCAGACT
CTATAGCGCCACTTCTTTTTCTTTTCACTTCTTTTCTATTATGCCTTTTCTCAACTTTAGTGTGA
AACCTGCCTAAGGAAAGAAACTTGAGGTAAGAACATAGATAAGAA
Right flanking sequence: Indices 55525 -- 56024
AACTTATATTAGAGTTTGCTTCCTTTAGCTGACTTATCAGAGATCGAGAGAATTGCCATAAAGTG
AAGACAGAAACCACGCAAAGGTGTACTAGTATCAAAAGTGAGTAGACAAGAAGGCTGTCATTGGG
GGGACCCTGCTTTGAGACTCTATTACCTATAAGATATCAGTAAGACGTGATATGAGGAAGTTAAT
GGAAAAGTAAAGCATAGTCCTTAGGTACAAGATCAGAGGAGTCAAAGAGGAGATGCCCTACCGGG
GAGGTGGCGGGCTATCATTAGAATATAGAAAGCAAGCAAATGGGGGAATTCTCCACCTTGGCTGG
TACCAGACCTTTTTTTGCCGCACCTTTGCCTCACAGGTCGATCTCCCATATGGTAGGCGTTGGCC
CCTCTGGCACTTTCGACGAAAGAAGTTCTCCACCCCTTTTCTGGTGCTTCGTGCCTGCTATGATT
GCTTGTCTCTTCGATTGCCGGACCTATCTCCGATCATGTATTTGA
Found at i:106192 original size:18 final size:17
Alignment explanation
Indices: 106169--106202 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
106159 TTGATTTCGC
*
106169 CCATTGTTGTTGCGAGCT
1 CCATTGTAGTTG-GAGCT
106187 CCATTGTAGTTGGAGC
1 CCATTGTAGTTGGAGC
106203 GAGAGGAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.21, G:0.29, T:0.35
Consensus pattern (17 bp):
CCATTGTAGTTGGAGCT
Left flanking sequence: Indices 105669 -- 106168
GTATCCCGACAAGGTGAAAGCCATTCAGGAGATGCCGATCCCACGAACTAACTGAGAAAGAAGTT
CACGGATTACGAGAACAGATATTCAGCACTAGAACGGACGTGCTGCGCATTCGCTTGGGCTGCTC
TGGCAGTACATGCTTTATCACACAACTTGGCTCATCGCTCGCATGGGCGCACTGAAATACATATT
CGAGAAAGCCTCTCTCTCTGGGGGGATAGCAAGGTGGCAAATGCTCCTGGCGGAATACTACATTG
TTTTCAAGACTCTCAAAGCCATCAAAGGCCAAGCACTGCCAGTGTGTTCAGGGGTTAAAGGTATC
TTCCTGACCACTATCCAAAGGATTCAGGCCTCTAAGACAGTCCCATCATTCTTGAGAGTCTTTAT
TTGTAGCTAAAGGCAGAGGGTCCGTTACAGACAGGTGCGGAGAACTAGTTAAGGTGACTTGGGAA
TAAGGGCTTGGAAGAGCAATGCGTAGAATCAGTTGTTGATTTCGC
Right flanking sequence: Indices 106203 -- 106702
GAGAGGAACGATTATCAGAAGCAGCTGAAGTCTGAGACACAAAGGCTGATTGCTGCTCACTGTGT
TGTGCAGCTTGTATGCGATGAAGACGCGATTCTTGGTTAAGGACCTTAGTCCGCAGCTCCTCAAA
CGATGGAACAGTCTTAGAGTCGGAGATGGTTGTAACAAAAGCTTCATATTCAAAGGGCTTTGTAG
TGAAAACTACTTTGGGGACATAGAAGAGAGTTGATAGCAGCCAAGGCATCAACCATAGACTTCAG
TTCCCGTAAATAGGCATCCATAGGCTTGTTACCTTTCCTGTTATTCTGAATATCGAACTTCAATT
TCATTTCTTTAGCCGTGGACTGATAAAAAAATCTTTGCTCTAAAGCCATCCAAACATCCATATAT
GTTTTGTTTTCATATTCTATTGTAGACTTCCGTCAACATGTCCACTGAGAGTGTCGCGTTCAACC
AAGAGCGAACACTTTGATCCGTTCTCACCCAAGCACTATAAGCGG
Found at i:116583 original size:18 final size:18
Alignment explanation
Indices: 116543--116585 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
116533 ACCGCCCTGC
116543 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
116562 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
116579 CATAGTC
1 CATAGTC
116586 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 116043 -- 116542
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTA
AAGGCGAAGACTCGGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTC
AGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 116586 -- 117085
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:118221 original size:21 final size:21
Alignment explanation
Indices: 118195--118238 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
118185 ATATCTAGTT
118195 TGAATTATAAGACCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
*
118216 TGAATTATAAGGCCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
118237 TG
1 TG
118239 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTATAAGACCCTCTTTA
Left flanking sequence: Indices 117695 -- 118194
ACCTATGGTGTACCAGTTGTTAGCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGC
TGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATAG
GCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTTC
CATAACCAAAATGAAAGAAAGTAAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTAG
TTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGCCGCCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGTTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 118239 -- 118738
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
GACTCCCTCTTTTAAGGTCGAGACTATCTAAAAATCAATATGGTCTAGCTAGTTCTCACTTCCGA
GCTCTAACTCCTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCTCCCCTTGGTC
CGCTTTCTCTATCTGGGGTTCATTCTGTTCGTACACATCTGATCCTTCTTTCTCAACCTTCAACT
TCTTCCGATCCTCTTTAAGCAGGAAGTGCGATCTGAAGGCCTGGG
Found at i:144516 original size:17 final size:17
Alignment explanation
Indices: 144494--144527 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
144484 GGGATCCTTT
144494 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
144511 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
144528 GGCTGGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (17 bp):
CTTTCTATCTTGACGAA
Left flanking sequence: Indices 143994 -- 144493
AATTCTTTCACTAGTCTCAGAAGCTCTTTGAGAAGCTGTTGAGAGTAAAGAGGAATGCCCTTTTC
CCTTTAGCATAGATAATCCATCTTTCTTATTCTTATATATAGCTTACTCGAAGGTTAGCCCCCTC
TGCTAGCCTTGAGGGAAGCGAAAGAAGTCAGGCAAGTGAAAGTGAAGTTGACTATAGCTTTTTGG
CAAGCGATCTCAACAAAGAAGCATAGCTCAGTGACGACTATCAATTTACTAAGAGAAGAAAGATC
GGATTGTAGGCTAGATTCAAGGTATGCCAGTTTCTTGATTCTACTCAACTTTCCAGATTGGCTTA
GTGTTACATCTATCAACTGACTGAGCTTCCTTAGCTGACTGGGCTTTCAGCGCTGAGTTTCAAGA
CAAAGCGAGTTACAAGACTCTGGGACTAAGAAGTTTCTCTTCATCACGGGGCGCATTCGTCTATC
GATCTTAGTCTTAGAGAAATGGATGGTAGTAAGGAGGGATCCTTT
Right flanking sequence: Indices 144528 -- 145027
GGCTGGAAATGACAAGGAATTGATAAATGCCACTAATCATCCAACTTTGAGATGAAGGACATGGG
TGAAGCTAGTCTATTCTTTTTTCTTTTCAATTCAGATAACCTTTATGCTTATAAATGAATCCGTA
AGAAGCTATATTCATCTTGACTTCGTGACCAATCTATCGGACATAGAAGACTTAGTGTGTTTTAC
AGCTTGAGTCCCATTACATCTGCATCATATCCTGTAGGCGAGGAAGGAAACTGACAGCTTGATGA
AGAACGTTAGTTAGATTCGATTTAGTCTTGAGACAAGCCCGACTGGATAAAGAGAGGAAAAAAAG
ACAAATCTTTCTATCTTAGTGCAACTGAGCCCTGACTTGAGATGAGATTGAGAAGGCGAAAAAAG
AGCTATAATTGCCTTACGCTGCTCTGAGATCGTAAAGCCGTAAATCAGTCATTCTATTGTCATCC
CGTCTCCTTCAGCAGATCTTGGAGGCCTGGAAGTCGTTGAGTTTT
Found at i:145975 original size:25 final size:25
Alignment explanation
Indices: 145947--146010 Score: 128
Period size: 25 Copynumber: 2.6 Consensus size: 25
145937 CAAACTATAG
145947 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
145972 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
145997 ACTAATGATAAAAT
1 ACTAATGATAAAAT
146011 CGATGAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (25 bp):
ACTAATGATAAAATAGATAGATTAT
Left flanking sequence: Indices 145447 -- 145946
CAGTCTCATGCTTCTATAAGGCTTTTAGAGACTCCACCTATTGTGATCCAACAGCCTATACGTTC
AAGCTTTCAAGCCCGAGCTAGTCTTCTTATCACCTAGCTACTTCACAGTCTCCTTTCGCGTACTC
CTCTTCCTATCTTCTCTCTTCACGAGACCTGTACATAAAAAACAAAGGTCTAGGTAGCTCATTTC
CTTCTAAGAAGTCAGATCTCCTTCTTCCTATATTATAAAAAGAATGAATAAGAGCCTTTCTTAAC
TCTTGAATTGTGTAAGGCATTTAGGAGCGCTCTTTGAATCCAACTAGAAATATCATAAGAGAAGA
AAGCAACTTCACCGAAAGGGCAGGTCTTTCTTTTTATTACTGATCTTATCAAGTAGTGCTTCGAT
AAGCCACCGCCCAATAGAGCTTAGTCATGTGTAGATCGAAAAGGTCTCGCGAAGCTGGTCACCGG
TAGGTCTAAGAACGGATTGAAAGCTTGATAAGCTGCAAACTATAG
Right flanking sequence: Indices 146011 -- 146510
CGATGAAAGTGCAAATGATACGGGTTGGATCTTCAGTGAGAATGAATTGATTTCGCAGTGCTAGG
GCGTTCATTCCGTTTCTCTTATTCATCGCTCTTCTGATGCTTTTCTATCTTCTCTGTCTTTCGAT
AGGGGGAATCTCGTTTTTTATTGATGTACTTTCAAAAGTAGCGGGCTTCATAGGGGTGAAGGCCC
TCTCTTTGCTTTTTAGCAAGATGGGCTGCTCCTCCGCTCTGGCCTTCGTGATTGGCTGTGCTTTT
CGAGCACTCGTCACTACGGAAGCAAGCCCCTCTCTGGCGCATTGGATGCTTCCCGGACCTTCTCA
CCAGCCTCACGTGGCAGAAGAGGATTACCTGCGGGACCATCCTGTAGCGCACCGAAGCGCCCCTC
CTGTAGGTCTTGAGGTGATCAAACCGGTTATAGAAGACGGGCAGCGTTACGACGAACTTGAGGGT
CGCCTCAATCGGCACCTCTTGGAGAATAGTGATCAAATCAGTACA
Found at i:153562 original size:20 final size:20
Alignment explanation
Indices: 153537--153576 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
153527 TTTGAAGAAA
153537 GATGACTTCTATTTTAAGAT
1 GATGACTTCTATTTTAAGAT
153557 GATGACTTCTATTTTAAGAT
1 GATGACTTCTATTTTAAGAT
153577 ATTGAGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
GATGACTTCTATTTTAAGAT
Left flanking sequence: Indices 153037 -- 153536
GATCTGGCTTTGAAGCCTCCTTGAGTCCGGCTTAGCTTCAGGTACGAGTCAAGAACAGAAGAAGG
GGATCGCCACAATCAAGAAGCAAGCTAAAAGCTGTTGTTTAGATGACTTTATGTTATGAAACAAC
CCAGAAAAAAAGTAATGATTGGAGTAGCCCGCCCAGTAGAGGCTTTCTTAGCGAAAAAAGTATAT
TCATGGATGGATTAGGGGAAAGAGTCTTCACCTTACTTTCAAGTGTCAATCATTTTTATTGAACT
TTCTTTCAGGCTAGCTCTGGGCAGGGCGCATACACACGAACTTTGAGTCGGATCCGAGCTCCAGT
AGACAGCGAGACAGCCATTGTGGTAAACGGGGGCAAAGCAAGGGAAAGAGAGGTGAGTGACGCCA
AGGGGAATTCCAGCACGAAAGCAAGTGTTGTTATCACACGTCCGTCCTGTCTGATTGATTCACCT
TCGATTATTCAATCAAGGAAGCAGAGTCAACGGCCTTTGAAGAAA
Right flanking sequence: Indices 153577 -- 154076
ATTGAGTTGGACAGTCAAAAAGCCCAAAGGCCAAAAATAAGAGCAAAAACAGAGGAGATGTCTTC
CTCATAGGCCATTGACTATCTATCCCCGGAGTCTTTCTCTCCGTCAAAGGGACTCTCTCTTTCTT
GAACAAGCACGGCGCTATCAGGACAAAATCCTAGCAGAAGCAGAAAAAGAGGAAGAGAAAGAGGA
GCGAACAGCCACTATCACATCGTTAGATGAGCTTCAGTTGCGCCCCTTTGTGAACGAGGGGATCG
AAAGGCCAGCCAAAGGAAGTACGGCTGAGTTTCAAGACTACGAGACTAAGAGTTGGGACTAGCCG
CATGTCATCTTTCTCAGAGTCTGAGCCTGACACCTCTATTATTACATCAAACAACAATTGAATTG
GGATCAAAGAATTAAGGGATTGGATTTGTCCCCGTCTGTCTTGTGTTCAACGAAGGAAAGCGCCC
TTCCTTCTTCAGCTTGAAAGACATCTCAGGAAAGAGCTACTTCAA
Found at i:161496 original size:27 final size:27
Alignment explanation
Indices: 161466--161517 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
161456 TATGGGTAGG
*
161466 AGTCAAGTGGAACATAGAATTGTTTGT
1 AGTCAAATGGAACATAGAATTGTTTGT
*
161493 AGTCAAATTGAACATAGAATTGTTT
1 AGTCAAATGGAACATAGAATTGTTT
161518 ATTGACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
AGTCAAATGGAACATAGAATTGTTTGT
Left flanking sequence: Indices 160966 -- 161465
TAGTTCCCCGGGTAGGTGCTTAGCTTGTTAGGAACCGAAGGCTGTTTGCGTACTTGCTTGTTAAC
TGAAAAGAAGCCAATAAGGCGCAGTTACAGCTACATTGGATAGGGAAAGGGTTGAAGTTGCGAAA
TCAGGCATAGGGTGTACGAATAGCACTGATCGTAGACCATCCAGATGCTTATGGGGCAGAACAGA
CCGATTGATTAGTTCCCGTGATCGTAGATCCACTTTAGCTAATGCAACTCGGGAAGAAGCTGCTA
AGATCCCGTCGCTTACAAATGCTCCAGCGTGAAATAAAGACTTTTTAGGTACAGGGAGAAATTCG
TACAATAGTGCGAGGACGGAAAAGAAAACGACCTTCTTTGACGCATGTTCTCCCAATAGTGCGAG
TACTGACTTGTTCGTAGAAAAGAAGAGTCCTGACTAGTATACCGTCTGCTATTCTTACTAAATCT
CAAGATTGAATTGGTAGTTGTACAATTGAACACGGTATGGGTAGG
Right flanking sequence: Indices 161518 -- 162017
ATTGACAAGTTTGTGGGTATGTGGTTTTTGCATTTCGTTCAATAGGGGGAACACGAGACCTGTAA
AGAAAGGGGAATACAAATCAATTTTTTTAGATTTTGACGCATTAGTAGGATTCATTCTTTTCCTC
TCCACAGATACCGAGATCTATCCTTAGATAGACGCACTAGAAAGTTGAACAGGAAAGTTGAGACT
GGCTTGTTCATGAGGCTAGTTCAGGAATGAAGGTTTTCTAGTTTCAATCTATAAATACCGTTTAG
CCCTCACTCGCCGGTGGGTTGTGATTGAGCTTAGCTTGGCAGATCTCGCACCGTAATGTGAGTGC
TTATTTACGAAAGATAGATTGTTGGTATGGCTGCTGCTACCAAAAGCACACTAAGTTAGTCACAG
GTAGAAACCTATGAGCTCTACTAGCTCTCCGACTCTATAAACTGAACTTTTCTTTCCCGCCGTTT
CGCCCCTTTACCCCATCTTTCTTGCTTGCTATGAGCGTTACTGCT
Found at i:170412 original size:18 final size:18
Alignment explanation
Indices: 170386--170426 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
170376 GACTGCAGTG
*
170386 TTGAACTGATTCTAATCC
1 TTGAACTGATTCGAATCC
* *
170404 TTGAGCTGATTGGAATCC
1 TTGAACTGATTCGAATCC
170422 TTGAA
1 TTGAA
170427 TTCGACCAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGAACTGATTCGAATCC
Left flanking sequence: Indices 169886 -- 170385
AGGAAGTCAAACCGTGATCGGGCTTGCCAAGAAGGCTCTTGTCTGCTGTCTCGGTTCTTTCTTTC
AATGAAAGTTGACTAATCTGAAATCGACGTTCTTAGATGTCCACGTATTTTTGATGTCAGAGACC
ACCAATGAGGTTTTGGCTTTAGTAACCTTTACTGAGAATTGCAAAACTATCCCTTGGTCGAAGGC
AACAATGAAGTTAACGATTCCAATTAAACGCTAGGCTGTGGTTCCTCAGTTCAGCTAATCCATTA
CGGGTTTCTGGAAGGCCTTTGAAAAGGAGAGGTTAAAAGAGCCCAATCCAGGTTTAGCTGTCTCA
GGCAAGAGTTGCTTAAAATGAGTGTTCGAGGCCCTTTTCAGGCGTGTGCTTCTGATTATAAGGGT
GGTTTACATGATCTGCTCGATACTCGAGATTTTGAATGGAATTGAATCGATCTTGAGCGCTAGCT
AGAGATGACCCTCTTTGAAGATCTAGCCTCACATGGACTGCAGTG
Right flanking sequence: Indices 170427 -- 170926
TTCGACCAGGGAATAGGTATCATCTCATTTTTCGTCTGATCGTCTGCGTCTTGTGCCTAGCTTCC
TACGAGCGGAGGAAAAGAAAAGCCTTTTTTCAAGTAAGTCAGGGAAGGAAGAAACTTCACTGCAG
GGGAAAGGCTTATGTCACTCTCAAAAGGAGCGATAGACCAGATGATCAGCAATAACCTGATCTTT
CTATATGAAATTTGACGATCATAGCTTGATTATAGTCTGGATCCCATTATCCTTCTAGAGGAAGA
ATGGAGTCCAGGTTAAAGGACGGGGGAAGATTTCTTCTTTCAATAGGCGTAGCTGCTTCGGATTT
TACAGAAGAAAAAGGGAGAAACTCTTCTTATTACGATTACGTGAGTTTTGACTATTTGGATTGGG
AAATAGCGCACTTCTCGCATTTAATGTGCCGGAGCGTCCCAAACAAAACAGTTGAAGTTGAGGAA
AGGCCTTCACTCGCGCATCCATATGGAGATCAGCCTACAGGCAAA
Found at i:195260 original size:22 final size:22
Alignment explanation
Indices: 195235--195291 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
195225 CTCCTAAGGT
195235 CGGTCGACGGTAGTCTCCCTCA
1 CGGTCGACGGTAGTCTCCCTCA
195257 CGGTCGACGGTAGTCTCCCTCA
1 CGGTCGACGGTAGTCTCCCTCA
195279 CGGTCGACAGGTA
1 CGGTCGAC-GGTA
195292 TCACTTCTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.16, C:0.33, G:0.30, T:0.21
Consensus pattern (22 bp):
CGGTCGACGGTAGTCTCCCTCA
Left flanking sequence: Indices 194735 -- 195234
AGGTTGGGAGATAGCTCTTAGCCTGTTGGTTGCTTGCCTGTGACTTGACTTCCTCGTACTCCTTC
TCCTAGAAAGCGACTTCTTTCATTCCTCGACAGCTAGGTCTTTGCCGACTCTTAGCTTTCCAGGC
GGGTTGGTGTTCAACCTTCATTCAATAGGGCTATCTATCCGAAAGGTCTTAATAAAAGAATCCCT
GTAATAGAAGTTCATTCCTTAAATACCTTCCTAATCAGTAATTTGATGGTCTTCCGTAAAGACTT
TCATGCGCACCTTCCTTCATAAGGACAGGTAACCAGGCGGGTGACTCACTCGTAGGTAGCACTAT
CCGATGCTTTGACTCCTTCTTTTAGTAGTTCCTTTGAAGCTAGTAACTAGAATATAGGACCCGGA
AGGCGGGCTCTTATTGCTAAAACCGGAGCTGTTGTAGAGTTGATAAATCTCATTTGAGGGGATGC
CTCTAGCAACAAGCCCCTCAGGGGCGGTAGTCTCCCTCCTAAGGT
Right flanking sequence: Indices 195292 -- 195791
TCACTTCTCCGACTAAAAGAGAGCTTCCAAGCAGGCTTTTCCAAAGAATTTATGTAGCTTTCCCA
CTCCCTCTGAACAAATCGAAGAACCTAATGGATCGAACTCATCCTTGACTGCTACGAAAGATTAT
TCTAGTCTAGTTTAAGAAGTTTTGCTGCAGTCGATTCTTCTATCATTGGATTTTCAGTCTTGGAA
GTAGTGAAGCGGTTGTCCGATTGATTGAGTAGTCCATGGCCAGTGAAGGTGCTTTCGGGTCTATA
CCCATAGCCCTCTCATCTAGGAGATCAAACTGATGACTCAAAGCCTATCGTATCAGTCTTGGAGT
CAGCGCCTAATTCATCTGTCGTCCTATAGCTTGGGACTGGGGTTCCGCTTGTAGTACCCTTGGCC
ATGCCTTCTAATCGGCTAATCCTTCTTGCTGGAGTTGTTGTACCAGCTCAAGAAGCAAGTGCTGA
TTTCTTCCTTTTGGTATTGAAGCGGCTCATTCTTTCTGGTTCACG
Found at i:206834 original size:6 final size:7
Alignment explanation
Indices: 206817--206842 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
206807 ATGCATCATA
206817 AAAAAAC
1 AAAAAAC
206824 AAAAAAC
1 AAAAAAC
206831 AAAAAAC
1 AAAAAAC
206838 AAAAA
1 AAAAA
206843 GAAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Left flanking sequence: Indices 206317 -- 206816
AGTAGTCCAACTCAATGTCTTACGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAA
GAATCATCGATTTTGGAGTTACCAGCTCAAGGCAGCTCATGGGAATTTCTTTAAGTAAGAACGAT
CCCCAGTGTCATCCTCTTCGTCTTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGT
CAAGGCATGCCTTAAGGTAGCGACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAG
GCTCTTGCTACTTCCCACGAGGGGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGT
TTATTCATGACTCCGCTGCGCTCCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGA
AATGGATTTATTCCGGCTAGCTCGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGAT
CATGGGATTTTTACTGAAAGCAGAGGAAGCATTCGATGCATCATA
Right flanking sequence: Indices 206843 -- 207342
GAAAAAGAAAGAAAATAAAAAGAAAGTGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCG
AGATATTCTATGATCAAAGGCTTTGTGGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAG
CAACAGGCCCAGCAAACTACCATTCATTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGC
TAAAAGGTACATCCGGGCCGCTCGCATGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCT
AACCCTTGTTCTATTGGTTTGATGCTACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCA
TGTCCATTTTTAGGGCTTCTTTTGTCAACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGA
TGTTTGTCCCGCATATCACTAGATCGATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCA
TACTTAGCCGCGAGCAATCTACGTTTGCGATCTCGTATATTTTGC
Found at i:206848 original size:21 final size:21
Alignment explanation
Indices: 206818--206867 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
206808 TGCATCATAA
* *
206818 AAAAACAAAAA-ACAAAAAAC
1 AAAAAGAAAAAGAAAAAAAAC
* *
206838 AAAAAGAAAAAGAAAGAAAAT
1 AAAAAGAAAAAGAAAAAAAAC
206859 AAAAAGAAA
1 AAAAAGAAA
206868 GTGCAGCTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.84, C:0.06, G:0.08, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAAGAAAAAAAAC
Left flanking sequence: Indices 206318 -- 206817
GTAGTCCAACTCAATGTCTTACGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAAG
AATCATCGATTTTGGAGTTACCAGCTCAAGGCAGCTCATGGGAATTTCTTTAAGTAAGAACGATC
CCCAGTGTCATCCTCTTCGTCTTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGTC
AAGGCATGCCTTAAGGTAGCGACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAGG
CTCTTGCTACTTCCCACGAGGGGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGTT
TATTCATGACTCCGCTGCGCTCCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGAA
ATGGATTTATTCCGGCTAGCTCGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGATC
ATGGGATTTTTACTGAAAGCAGAGGAAGCATTCGATGCATCATAA
Right flanking sequence: Indices 206868 -- 207367
GTGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCGAGATATTCTATGATCAAAGGCTTTG
TGGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAGCAACAGGCCCAGCAAACTACCATTC
ATTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGCTAAAAGGTACATCCGGGCCGCTCGC
ATGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCTAACCCTTGTTCTATTGGTTTGATGC
TACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCATGTCCATTTTTAGGGCTTCTTTTGT
CAACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGATGTTTGTCCCGCATATCACTAGATC
GATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCATACTTAGCCGCGAGCAATCTACGTT
TGCGATCTCGTATATTTTGCTTCTCCGACATCTTACTGACTTTCC
Found at i:206857 original size:15 final size:15
Alignment explanation
Indices: 206839--206868 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
206829 ACAAAAAACA
206839 AAAAGAAAAAGAAAG
1 AAAAGAAAAAGAAAG
*
206854 AAAATAAAAAGAAAG
1 AAAAGAAAAAGAAAG
206869 TGCAGCTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAGAAAG
Left flanking sequence: Indices 206339 -- 206838
CGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAAGAATCATCGATTTTGGAGTTAC
CAGCTCAAGGCAGCTCATGGGAATTTCTTTAAGTAAGAACGATCCCCAGTGTCATCCTCTTCGTC
TTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGTCAAGGCATGCCTTAAGGTAGCG
ACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAGGCTCTTGCTACTTCCCACGAGG
GGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGTTTATTCATGACTCCGCTGCGCT
CCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGAAATGGATTTATTCCGGCTAGCT
CGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGATCATGGGATTTTTACTGAAAGCA
GAGGAAGCATTCGATGCATCATAAAAAAACAAAAAACAAAAAACA
Right flanking sequence: Indices 206869 -- 207368
TGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCGAGATATTCTATGATCAAAGGCTTTGT
GGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAGCAACAGGCCCAGCAAACTACCATTCA
TTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGCTAAAAGGTACATCCGGGCCGCTCGCA
TGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCTAACCCTTGTTCTATTGGTTTGATGCT
ACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCATGTCCATTTTTAGGGCTTCTTTTGTC
AACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGATGTTTGTCCCGCATATCACTAGATCG
ATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCATACTTAGCCGCGAGCAATCTACGTTT
GCGATCTCGTATATTTTGCTTCTCCGACATCTTACTGACTTTCCC
Found at i:219388 original size:24 final size:24
Alignment explanation
Indices: 219360--219407 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
219350 TAGTTTCCGC
219360 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
219384 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
219408 CATAGCCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
TTATAGTCTTACCAAGGTGTAGCG
Left flanking sequence: Indices 218860 -- 219359
GAGGCTCCACTCTATCCTGTTGATAGCTGGAGGAAGAGGGAAAATAGGAATAATACCCTGCTTTT
AGGGGGACTCAAGTAGATTCCCTCATCTTTCGCAACTCGATTCCCTCATCCATAAGGACAATGGG
AAATACGAATCCCTAGGACAATGGAAAACTTTATACCTTTCCTTTACTGTAAAGTGAGGCACTTA
TTAACTCCTCGGACATTCACAATGTCAGTAGCTTGCTGTCTTCTCCCTCACAGCGCATTCCTTTT
GAAAGCAGGGGTTGCCAGCTGAAAAAAAGTAGACCTATATTCACCAGCTGTCTTTCTTTCAGTTC
CGTTCCAATTTAACCTTAATAGGTGGGCTGGGATACTAGCAGGGAAGAGGAATTAAGTAATCGCT
TTTCAAAGCTCTTTACCTAATTCGTGTGTCACCGCTGAGATGGTTGTTGTTCGAAGACTTACCGT
GAATAATAGAATAGGTTGATGAAAACGAATCTTATTAGTTTCCGC
Right flanking sequence: Indices 219408 -- 219907
CATAGCCATCTACTTGTATGCGAAGGCTGTTAAGCTGTTGTATAGGAATGCAACCTATCCCCCTC
CTATGAAAACCCTATCAACCAAGAATCCAATGGAACTAGACACCGGAAGATAAGAGGATGGAAAC
AAGATGTTAGCAAGCCTGCTAGACCGTGTTTACTCATGCTCTGGTTACTACCCATCCTCAATTGT
TTTTTGCTAGCTATCCTAGCAGTTACTAGATGCTGACTCATTCCCTTGAATTATTCTCTTTTGTT
TTGCTCCCTCACACCTTGAAGAAGAGCTGATCTTTCCAGGTCCATTCGAAGCTGTCCGTTGCCAT
AGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAACGATCCACTCCGCGCTTTCACCTGTACC
ATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAAAGACCCGAAAGCAATGAGGTGCTGGTTC
TGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGACTCCCTGGA
Found at i:220230 original size:20 final size:20
Alignment explanation
Indices: 220205--220251 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
220195 AAGAAGCAAG
*
220205 TAAGGATTGCTGTACTGAGC
1 TAAGGATTGCTGTACAGAGC
220225 TAAGGATTGCTGTACAGAGC
1 TAAGGATTGCTGTACAGAGC
*
220245 TACGGAT
1 TAAGGAT
220252 ATACTTCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TAAGGATTGCTGTACAGAGC
Left flanking sequence: Indices 219705 -- 220204
AGGTCCATTCGAAGCTGTCCGTTGCCATAGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAA
CGATCCACTCCGCGCTTTCACCTGTACCATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAA
AGACCCGAAAGCAATGAGGTGCTGGTTCTGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGAC
TCCCTGGACATTTAGCATTGGTTCCGGAGGGTAAAGTGATCTCACATCGGCTTGGAAGAGATTGC
GGGACAATCTATGGGATACGGAATAAAATAGACTCACTTCAGCAAGGAAGAGTAAAAAAAGCGAA
AGAGGCTTTAGTTATTTAGCTGTACTTTGAGGGAAACCAAGATGCTTGGGAGAAAGGTTGAGGGT
TCAGAGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGGCCTACCTTTACTCGA
GATCTCCTGTGTAATAGCGGGACACTTCGACGGCAAAGAAGCAAG
Right flanking sequence: Indices 220252 -- 220751
ATACTTCTCAGCACTTTACCTATTGCTTCGCTCTAGTGACAACGTACCTTTGGTGGATAAACTTC
TACGAAAAAAGGCTAGAATAGGTAAGATAGTTGGAAAGCCAGAGGCTAGTGAAGGGCTTGACTAA
GGATTTCTTACCCTGTCTCTGCAAAGGCTTGTTAGAACTCTCATCACCCATATGGGGCAAAGGGT
GTCTACCTCAAGTACGGTTTACAACCCTGTGTCGCTTTCGGGTACAGGTTCCCTTTGTTGAAGGC
CGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAAC
ATTGGCTCGAGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAGCAGGGTCACCTTACGTCCTTG
AACCGATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGTAC
AGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGAT
Found at i:226614 original size:18 final size:18
Alignment explanation
Indices: 226593--226627 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
226583 TTCTTATCTG
*
226593 TCTTAACCACCTTGGTTT
1 TCTTAACAACCTTGGTTT
226611 TCTTAACAACCTTGGTT
1 TCTTAACAACCTTGGTT
226628 GTTTCCTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (18 bp):
TCTTAACAACCTTGGTTT
Left flanking sequence: Indices 226093 -- 226592
TAAATGCCTATATTGCTTTATAATGTTATTGTTATGTTGATGTTATATTAAAGAATGAAATCTAA
AAAAGTTGCTTAGTCCCATTCTTTATAATTGTCTTTCTCATACTGTGTAAACGAACTTCAAGTCT
GAATTGTGTACTGTACTCAACAGGAAGCGTCACAGCCCATCCCGATGTCATTCTCCATTCCAATT
GAAATAGCACAGAATCTAGCTCTCGCTATCGTGCCTCAGAAGCTCTAACTATGCCTTCATCCGCC
CCTCCGAAAGAACTCCAACTATTGGTTTATGCGCTCCAGTAAGCGATTTCGTCTCAAGTGCAGCT
TTTACGTTACGACTATACTTCGTTGCTGTGCTGCTCTCTGGGTTGTGAAAGAAGTGCAGTTTTTA
CGTTAGAGGGGGATCTCTCTGGTATACTTTTTACGGAGGTTTCGTCTTGTCAGTCTGGTTTTTCC
TCTCTGTTTTCTTAACAACCTTGGTTTTCTTGGTTTTCTTATCTG
Right flanking sequence: Indices 226628 -- 227127
GTTTCCTTAGTGAATTTCTTCATCTCATCTTTCAGATGATCTATCTTACTTTTCATCTCGGAGAT
CTCTCTATCCTTCTCTGAAATGATGCCGATCATCTCTCTATCCCTTTGAGAGAGTTTTTCACTGA
GAATCTCACTCTTAGTCTGAAGGCGATTCATTTCATTCCTTAGATAGAATACAATTTTTTCGCCA
CTGCGGGGGTTTATGTTAGACAGATCTTCTACATGTATAGGTTTAGTATCAATCCATTTATTATT
ACTATATACAGGTATCCTCTTTGTACCTCAAGTTCTATATAGAACAGATTTCTTTACAACTGTTC
AGGATTATATGAAAAAAGACCCTATCAATGTATGGGTTTATGATCGAATTCACAAGAAGAGGCGT
CAGGTTACTCTTAGAGTCCCTTCGGAAACTAGAGAGAAAAGGAAGACTCAAGTATCTACCTTCGT
CAATTTCATTCACCAAAAGGATGCATATATTGCTATGAATGTTAT
Found at i:227653 original size:21 final size:21
Alignment explanation
Indices: 227629--227674 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
227619 TGTATTTCCG
227629 GAATCATTTGAGTCATTCATC
1 GAATCATTTGAGTCATTCATC
227650 GAATCATTTGAGTCATTCATC
1 GAATCATTTGAGTCATTCATC
227671 GAAT
1 GAAT
227675 TATAGTGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (21 bp):
GAATCATTTGAGTCATTCATC
Left flanking sequence: Indices 227129 -- 227628
TTGGAAATGCTTAACCAGGGATCCCCCATATACACAGTTCATGACAACTTTATAACTACAGCTGA
TCATAGCAAGAAACTGCCTGATACTTATGTCAATATATTTTGTAAAATGGATCCTCTTTCTATCA
TCAATGAGTATATCTATCACAATGTGATTGATTATCAAGAAAAATGATTAGATGGTGGTGAATTT
GTTTACGATGAAAAAGGTATTGATACAGAAAACTGGAAAGGTATAATCAAGCAGGAGGATCTGAA
AAAAGACTTGTATAAAAATATACCAGAAAAACAAAAAAAGAAGAAAAAGGATAGGGATACGTGGG
AACAAAAGATTCAAACCATAATGACTTCTTACGAGAACTATGTTAATTTCTTATGCGAACCTTTT
GATAAGAGTTTAGGAAAAAATGAAAAAAAAAGATGTTTTTCGAAGGTAATTAGTAAACTTGATCG
TGATACTAAGTATCAATATTATAGGGAGAAATTGATGTATTTCCG
Right flanking sequence: Indices 227675 -- 228174
TATAGTGTTCATTATTAAAGAAAAAAAGATGTGGACTGGACCCACTTACTTTTCTTTGTATTTCC
TGCTGAAACCAACCTAAGAGAAAGAGACCCAGGTGATATGGATTCGCTAGGACGGAGTTGCTGTC
GATTGAGGATTGGCCGAGGGGAGTGCCATCATGTAGCTGGGTACAAATAAGCCAGTGAAAGAGGA
GTAGTCAGGGTACGACGAAGCACGCCTGGTACGTAAGCGAATACGGATCACGTGGGTTTGTACTG
ATCCGCTTTCGAGCTGTCGAGTGACGATTGCTCCATCTATTAAGAAAGGACGCGGGGGGCCTGTC
TTATAATAAAGGGGGTACTCTCTTCTCTGATGTGCGCTATATTATTGTGTCCTATTCCTGAAGGA
GTGATCCGGGATTAAGCCACGTGGCGATACCCGCCAAAAGAAAGGGGGCCTTTCGTACGGATTGG
AGTACGAAGAGAATTCTTCAGCACACTAAAATCTAGTGGATCCGG
Found at i:236831 original size:7 final size:7
Alignment explanation
Indices: 236788--236827 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
236778 AAGAATAATG
236788 AAAAACA
1 AAAAACA
236795 AAAAACA
1 AAAAACA
236802 AAAAACA
1 AAAAACA
236809 AAAAACA
1 AAAAACA
*
236816 AAAAAGA
1 AAAAACA
236823 AAAAA
1 AAAAA
236828 GAAAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.88, C:0.10, G:0.03, T:0.00
Consensus pattern (7 bp):
AAAAACA
Left flanking sequence: Indices 236288 -- 236787
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 236828 -- 237327
GAAAGAAAAAAAGAAATAAAGAACTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGA
GCTTTAGCCATTGGACCACATCGATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTT
CGAATGAGGCTAGTGGAGACTAATTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTC
ATTCCCATCCTTCTTCTCCCTAAGAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGA
AAAACCAACAAGAAACTTCCCACTTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGA
AGGACAGGGGGCGCTAGGTCAGAAAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCT
ACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGA
AGCCGACTCTCGTTCTTTGGACCAACCTATGACCGGAGTTCGTCA
Found at i:241613 original size:7 final size:7
Alignment explanation
Indices: 241601--241636 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
241591 TCTTCTCTTT
241601 TTTTTTC
1 TTTTTTC
241608 TTTTTTC
1 TTTTTTC
241615 -TTTTTC
1 TTTTTTC
241621 -TTTTTC
1 TTTTTTC
241627 TTTTTTC
1 TTTTTTC
241634 TTT
1 TTT
241637 AATATAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Left flanking sequence: Indices 241101 -- 241600
TTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGATTGGGAGAAAGAGC
GAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACGGGGATTGCCTTCT
CTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGCTAATAAGAAAAAC
GAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAGGCTCTGAAGGCTT
TACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCCA
ACTCGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATCGGGAAGGCCTTCC
CACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAAGCCCTTCGCAATC
GAAGGTGAAAGCGGGAAAAAGACGACGAAAGCCTTTCTTCTCTTT
Right flanking sequence: Indices 241637 -- 242136
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGATCG
TGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCCAC
TTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGTCC
CAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATACA
TTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTATAA
Found at i:241615 original size:19 final size:19
Alignment explanation
Indices: 241588--241636 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
241578 CGACGAAAGC
*
241588 CTTTCTTCTCTTTT-TTTTT
1 CTTTTTTCT-TTTTCTTTTT
241607 CTTTTTTCTTTTTCTTTTT
1 CTTTTTTCTTTTTCTTTTT
241626 CTTTTTTCTTT
1 CTTTTTTCTTT
241637 AATATAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
CTTTTTTCTTTTTCTTTTT
Left flanking sequence: Indices 241088 -- 241587
GACGTTCGGACCTTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGAT
TGGGAGAAAGAGCGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACG
GGGATTGCCTTCTCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGC
TAATAAGAAAAACGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAG
GCTCTGAAGGCTTTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCT
GCAGCGTCCTCCAACTCGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATC
GGGAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAA
GCCCTTCGCAATCGAAGGTGAAAGCGGGAAAAAGACGACGAAAGC
Right flanking sequence: Indices 241637 -- 242136
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGATCG
TGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCCAC
TTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGTCC
CAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATACA
TTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTATAA
Found at i:253917 original size:12 final size:12
Alignment explanation
Indices: 253900--253924 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
253890 TATGCGACCT
253900 TCATTCACTAGA
1 TCATTCACTAGA
253912 TCATTCACTAGA
1 TCATTCACTAGA
253924 T
1 T
253925 GTAAAGAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATTCACTAGA
Left flanking sequence: Indices 253400 -- 253899
CTCCTCTACCCTTGGTACAGAGCTTCCATTTCGAGAACCTTTCATCCGAATCTCCCGGCTGATTC
AACACGAGCAATTAAAACTACCGACTCTAGAACAGCGAAAACAGAGCTAATACCGATTCCTGGAC
CTGGTGAAAGCTTTTTCCCTGCCTTTATTCAACAGTCCGAGAGGATCTTGGACAAAGGATTACCG
GCCTCCCTATCCCATCTAATAGCCTATTGGTCTTACCAGCAGCCTATCCTATGCTCTGCTTCCGA
AGAGGCTAGACCGCTAATGCCGTTGAATGAACGTCCTTTCGGACATGCTGTTGAAAGATGAGTCC
TCTGTGCACATCAAATTATTCCTGAAACCAGGGCATTTCTTGCTTCTGATCTTTCCTGTCTTCTC
TTATCTGCGGCGTCTTGCTTGCCCTTTTAATATGCTATTTATCTCCCCTTCGTTTAGTTCAATAG
CAGCGAATTCTATAACAGACGAGTCTTGCAGCGCATATGCGACCT
Right flanking sequence: Indices 253925 -- 254424
GTAAAGAAACCTTCCTAAGGGGAAAGCCACATACCCACTTTTCCCCCTCCTCCTTCCTCCGTTAT
TTTAGCTGCTACGGCGACAGACGCATGAACAAGTGCCATTTGGAGGGAGGATTCTATGGGAAATG
GAAAAACGTCGAAGTAAGCAGTGGCTTATAAATCGGTACTAGAAGCCCGAGAGCTTGCCTGTAAG
ACAATTAACCCCACCTTATGTGCCTAGCCCAGCCCTTCTTCTCTTCCCCTCCGTACTGTATGACT
GTATGTAGGGAACACCGCCTCAGAAGGTATTTGATCTGTATTTCCATTTCCAATACATCTGAAGG
AGTTTCCCTGAAAGCTATGCTATGCCTTTTTACCTCTCCCTGTCGCAGGAGCTTAGCCATGTGTG
ACCTGAAATGGATGTAGAATAAATACCCGGTAAAAGAAGGGACTCTGATGAAAGGCCCTTAAGGA
AAGGAGCTTTCCTATTTTTTTTCAGGCGGGGAATCCTCATTGTGT
Done.