Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_053920
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 440720
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Found at i:2095 original size:14 final size:14
Alignment explanation
Indices: 2076--2103 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2066 CGAATCCTGT
2076 CACCTTGATGTGGC
1 CACCTTGATGTGGC
2090 CACCTTGATGTGGC
1 CACCTTGATGTGGC
2104 GAAAAAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (14 bp):
CACCTTGATGTGGC
Left flanking sequence: Indices 1576 -- 2075
GCGAGCCGGATTTCAAAATTAAAGTGAAAGAGGTGGAGTAAGTTCGAGTTTTCTAAAAGCGGTTG
ATTACTTTTCTCATTCCTAACGTCAGGTTCTCGCGTCCCTGTGCCCAGCGTAGAAAACGGAAGTG
CGCTCCTGCGCCCCTAACAGTAAAGGGGCCTGACGGAACTACATGAAACTGAAGTTCGGAACTAC
TTAAACGGATTCGCGGCAATTCGTTAGTCTTAGTCAAGGGCGCTCAAGAATTCGTTAGTTTAAAC
TATTGAATTGCGAGTTGAGGCCCGCAATCCATTAAAGAGCAATTCGTTAATAAACGTCAAGAACC
CGAATTCATTTCATAGTGCCGGAATTGCTCTTGCTTCTTCGGCCCGTTTGCTGGGCGAGTTCGGT
TCTAGTGTTCATCGATCGGGTGGTCCGTCCCGGGGGGGTGAGACGAGGTGTAGCGCAGTCTGGTC
AGCGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGT
Right flanking sequence: Indices 2104 -- 2603
GAAAAAGATTGATTGTTCGAAAATGCCATGACAATTCTTAAGAGGTGTAGATCTTTAGGGATATA
CACATAAAAGAGCTATAGATCTTTAGGGATATACACACAAAAGTGGTGTTGACCTATGAGTGCGC
CTAAAAATAAAAGAGGTATAGATCTTTAGGCACAAAAAAGTTGTGTAGACCTTACCTCTAACGAC
GAATAATAGTAAAACTAATAAAATAAAATCAAATCATGCTTATCTTGAGAAAAAACCCTGGGACT
GCCCTACCCATGTTAGGGATTTCTAATAATCGAGTGTTACGTGGATTTCATACTTTTAATGTGAG
CGGATTTGGATTGAAAACTTTGGATGTTAGAAGATTTGGATTTAAAACTAGAGATGTCAGCAGCA
TTGCTATTATGTTAAGAAACTCAGATTGTGGTGTCTTGGATAGTTGGGGTTCGGGGTATAAAAAT
AATAGGTTTTATTCATCAAATTCAGACATTAATGATAAATCTAAT
Found at i:2449 original size:30 final size:30
Alignment explanation
Indices: 2415--2477 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
2405 TGGATTTCAT
* **
2415 ACTTTTAATGTGAGCGGATTTGGATTGAAA
1 ACTTTGAATGTGAGAAGATTTGGATTGAAA
* * *
2445 ACTTTGGATGTTAGAAGATTTGGATTTAAA
1 ACTTTGAATGTGAGAAGATTTGGATTGAAA
2475 ACT
1 ACT
2478 AGAGATGTCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (30 bp):
ACTTTGAATGTGAGAAGATTTGGATTGAAA
Left flanking sequence: Indices 1915 -- 2414
AGTGCCGGAATTGCTCTTGCTTCTTCGGCCCGTTTGCTGGGCGAGTTCGGTTCTAGTGTTCATCG
ATCGGGTGGTCCGTCCCGGGGGGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTT
GGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCTTGATGTGGCCACCTTGATGTGGCGAAAAA
GATTGATTGTTCGAAAATGCCATGACAATTCTTAAGAGGTGTAGATCTTTAGGGATATACACATA
AAAGAGCTATAGATCTTTAGGGATATACACACAAAAGTGGTGTTGACCTATGAGTGCGCCTAAAA
ATAAAAGAGGTATAGATCTTTAGGCACAAAAAAGTTGTGTAGACCTTACCTCTAACGACGAATAA
TAGTAAAACTAATAAAATAAAATCAAATCATGCTTATCTTGAGAAAAAACCCTGGGACTGCCCTA
CCCATGTTAGGGATTTCTAATAATCGAGTGTTACGTGGATTTCAT
Right flanking sequence: Indices 2478 -- 2977
AGAGATGTCAGCAGCATTGCTATTATGTTAAGAAACTCAGATTGTGGTGTCTTGGATAGTTGGGG
TTCGGGGTATAAAAATAATAGGTTTTATTCATCAAATTCAGACATTAATGATAAATCTAATTCTA
ATATAATGTCCAAATATTATGGTTATTGGGAATACGTGCAGAGACTTCTCGTATTTATTCCCCTG
CTCGGTAGTTTCGTTGCAGTTTCTTTTATACGTTTTCTAGGACCAGAAGTAACAATGACCTCCGG
TAATAATATTTGCTTTTCTTTTATTTTACTCATTTGTTGCATATTTTTCTATCGTTTTTTTGGTT
CTCGCTGGGTCTAAAAAACTTTTAATTATTCTTAAATTTTTAACGATCCTTCTAATAGCTTTATT
CTTTACATATCTTCGCCTTTACGTGATCTCTCACGTATTTTGTGCTTTTTCTGGTATTTATTGTT
ATGTTTCGAGTGGGGAAGTCGTGACCCACTCCGGACCATCATCCC
Found at i:5443 original size:5 final size:5
Alignment explanation
Indices: 5433--5462 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
5423 GCTCGCCTAC
5433 TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG
5463 CCCCTACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 4933 -- 5432
CCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGAGAGGTTCACC
ATGATGGGGGGTACTTTTTTCTTTTTTCCGTTCCGGAAAGAATGAAATGCATAGGGGACCATCCT
TTTTTCTTTTTTTGCGGCATGCTCCTCAGATTTACGGATTCGCAGGGGGCCTCAGGCCCTACTTA
GTTGACTGACAATGACAAAGGCTTGCGAAACTAAGTAGCGCCTTTTGAATTGAATCTTAACTTAA
GTAGTCTATCAGTGTGCGAAGCGGCTTTGCCCCTTTTCAGTAGGGGAGCGAAAGGTTAGACCTTA
GAAAGTCAGCGAACAGCGGTTCTTCTATGTAGGTATGGCGTTCCCCCTTGACTCTCCTAACGTCG
AGCTAAGTGACTTCGTAACCTTTGCGTAGCGTAGTAGAATGAAGGCTACGCACCGACGCTCTCTT
ATCGATTCTATTAGCCTAAGCGTCTTCGCTAACTCGCTCGCCTAC
Right flanking sequence: Indices 5463 -- 5962
CCCCTACTATAATTGTATAGTAGGGTAGGCTAGGCTAACTCAGCCGCTTACTTCTATTCTTTGAA
TTCCGTTCCAGCAAGAAAACGCCTTACGGGAACCTTACGGGAATCAAGGGCTTATCAAAAAAGCG
GGCGGAAATCAAAGAAAATTGATCTAGTTGCGTTAGCACACTTTTTCAACAAACAACTATTAGTA
ACTAATAGTTTTAACGCCTTACGGGAACCTTACGGGAATCAAGGGCTTATATATCACTCTAAAAA
CAAGCGCAAGCGCGCTAGCAAGAAAACGCACACTTTTGAAACTACAACTACTACAAGGCGCTAAC
GCCTTACGGCTTTCGCGCTCAGCAAGAAAACGGATGCGCGTTGCTAACGCCTTACGGCTGGCTTT
CGCGCTAGCGCGCTCGTCCGTTGCTTGTTTGCTTGTTCCAAACCTTTTCCTTTTTTAATAACCCA
TTCTCATTATCTTTCATAAGTCAAGTAGGCGAACCTATAGGTCCT
Found at i:6765 original size:39 final size:39
Alignment explanation
Indices: 6711--6789 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
6701 CGATTTTCTA
*
6711 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
6750 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
6789 T
1 T
6790 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 6211 -- 6710
CCACACCTGTGTAGAGTAGATCGTTCAACACCTACGGCACAAACCCATTTTTTACCCATTGGTCC
TAGTATCATAGGCGACCGAACGGCCGCCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACAGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 6790 -- 7289
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTGAGCCCGCCTCACTTGACTGAGCATAAGCGAAGTC
AAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTTGTGGT
TGAGTCAGCTCCGAAAACGATGATCAAGTCGCGCTACAACTCAATATTATTAAATCGCTTCGCCC
TTTTATTTTAGGGAGAAAGATAGTTATTTACTACTACTACTAACTAAGATAATAAAGAACTACTC
TAATAAAGCCCTTACGGGAGAGAGTCTCACCTGCGCCTTGACCTATAAGCAACCTTTACGTTGCT
AACTTGAAGTATGCTTCTTCTCAAGTAGTGTAGTCACTTGACTAAGCCCCGTTTGCGTAGTAGTT
TGCTGCTTTCAAGCCGGAGTTTGCTGGTTCAGAGCTAGACCGACT
Found at i:18586 original size:32 final size:32
Alignment explanation
Indices: 18545--18608 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
18535 TTCTCACACC
18545 ACAAGTCTAACGTCCGGTCCTGAGTCACTCTT
1 ACAAGTCTAACGTCCGGTCCTGAGTCACTCTT
18577 ACAAGTCTAACGTCCGGTCCTGAGTCACTCTT
1 ACAAGTCTAACGTCCGGTCCTGAGTCACTCTT
18609 TAGGATCTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (32 bp):
ACAAGTCTAACGTCCGGTCCTGAGTCACTCTT
Left flanking sequence: Indices 18045 -- 18544
AAAAGATTTGGTTGTGAGGTTAGGGTTGTGGAGGATGATTCGAAGTTCTCAATGCTGTAATGTAA
AACGTAAGCGCAAGCTTAACTCGATCATGACCTTGACTTATTGGATTCGACCCACCTGAATATCT
CCTTCCCTTTCATATTGATTTTCCCTCGAGCCTAGAACTCTTTCTATTAGAAGTGAATTACTGGG
CCTAAAAGACTGCTGATTTGCTCCATTCCGGTTTGCTTCATTACTGGGCGGGCCTAGCCCTCTTT
CTTTGGATTCAACTGAGACGAATTGCTCGTTGACGGCTTAGATCACCACGGCATCTTACCTTGCT
CTTGTCTTTCTTGCTACCGCTCTGAAAGCTTGAACTAACTCCGAGATTCGACTTCCTTGCCCAGT
CAATCTCTTTTTTTAGGCCTGTAGCTACCTTCCAGCCATCGGCATATCTGCTTCCGCTTTCTCAC
ACCACAACTCTAACGTCCGGTCCCGAGGCAGATGCTTCTCACACC
Right flanking sequence: Indices 18609 -- 19108
TAGGATCTTCTCATTCACTCTTCGCTTTAGTCTTCGGCCAATCGCAATGATTGACATGACTGGGA
GAGTCAAGGTCCCCCCCTCCACACTAAAGAAAGGGGCACTTCTTTCGGTCGATTCAATGCTTTGA
ATCCATGCATGGAAGGTCTAAATAAAAGTACTCTAGCCAGAGGAAAGAGATCTCGTTTTCACCCT
GCCCCGTGGGCAATCCATCAACACTCATTCCCCTCTGGAACAAAGACAGATTACAAATCTCTAGC
TTACTACACCCTTCTATCTAGAGCCTTTTTCCTTGAGGCTAATTAGAAGAAGAAAAGCAGATAAG
AATTGGTTGGACCATTAGGTTCTTCTCAGGGAGTCTAGCTTTAGGTTCCATTTCCCTTACGCTCG
TCTTTTTTCTATTTTGACCACCTTTTCTAATAAAGCTAACGCAATCTTAAGGTCTTTGTGTACGT
GACGCCTAGCTACAAACTCTATATGATTCAGCAGGTGCGACACTG
Found at i:31192 original size:39 final size:39
Alignment explanation
Indices: 31137--31215 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
31127 CCCATCCTTC
*
31137 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
31176 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
31215 A
1 A
31216 TAGAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 30637 -- 31136
AAAGTCTAGGTTGGCTCCCAGCTCCATCTCGGCCGGCGTCCTGCAAACTACTACGCAAACGGGGC
TTAGTCAAGTGACTACACTACTTGAGAAGAAGCATACTTCAAGTTAGCAACGTAAAGGTTGCTTA
TAGGTCAAGGCGCAGGTGAGACTCTCTCCCGTAAGGGCTTTATTAGAGTAGTTCTTTATTATCTT
AGTTAGTAGTAGTAGTAAATAACTATCTTTCTCCCTAAAATAAAAGGGCGAAGCGATTTAATAAT
ATTGAGTTGTAGCGCGACTTGATCATCGTTTTCGGAGCTGACTCAACCACAAATCTGTTGAATGA
AGGTAGCTTGCTTACTCTCAGCCACTAGTTAGAAGGAAATCCCTTGACTTCGCTTATGCTCAGTC
AAGTGAGGCGGGCTCAGATTCCATTCGAAGTAACGTAACAGGATTCGATGTTGCACCATCTTCCA
CTCTTCTCGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 31216 -- 31715
TAGAAAATCGAAAACGTACATAGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTACAGCAGGTCG
GTCTAGTAATTAGGGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATGGGTAAAAAATG
GGTTTGTGCCGTAGGTGTTGAACGATCTACTCTACACAGGTGTGG
Found at i:32474 original size:5 final size:5
Alignment explanation
Indices: 32464--32493 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
32454 ATAGTAGGGG
32464 CTATA CTATA CTATA CTATA CTATA CTATA
1 CTATA CTATA CTATA CTATA CTATA CTATA
32494 GTAGGCGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
CTATA
Left flanking sequence: Indices 31964 -- 32463
AGGACCTATAGGTTCGCCTACTTGACTTATGAAAGATAATGAGAATGGGTTATTAAAAAAGGAAA
AGGTTTGGAACAAGCAAACAAGCAACGGACGAGCGCGCTAGCGCGAAAGCCAGCCGTAAGGCGTT
AGCAACGCGCATCCGTTTTCTTGCTGAGCGCGAAAGCCGTAAGGCGTTAGCGCCTTGTAGTAGTT
GTAGTTTCAAAAGTGTGCGTTTTCTTGCTAGCGCGCTTGCGCTTGTTTTTAGAGTGATATATAAG
CCCTTGATTCCCGTAAGGTTCCCGTAAGGCGTTAAAACTATTAGTTACTAATAGTTGTTTGTTGA
AAAAGTGTGCTAACGCAACTAGATCAATTTTCTTTGATTTCCGCCCGCTTTTTTGATAAGCCCTT
GATTCCCGTAAGGTTCCCGTAAGGCGTTTTCTTGCTGGAACGGAATTCAAAGAATAGAAGTAAGC
GGCTGAGTTAGCCTAGCCTACCCTACTATACAATTATAGTAGGGG
Right flanking sequence: Indices 32494 -- 32993
GTAGGCGAGCGAGTTAGCGAAGACGCTTAGGCTAATAGAATCGATAAGAGAGCGTCGGTGCGTAG
CCTTCATTCTACTACGCTACGCAAAGGTTACGAAGTCACTTAGCTCGACGTTAGGAGAGTCAAGG
GGGAACGCCATACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAACCTTTCGCTC
CCCTACTGAAAAGGGGCAAAGCCGCTTCGCACACTGATAGACTACTTAAGTTAAGATTCAATTCA
AAAGGCGCTACTTAGTTTCGCAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGGCCTGAGGCCCC
CTGCGAATCCGTAAATCTGAGGAGCATGCCGCAAAAAAAGAAAAAAGGATGGTCCCCTATGCATT
TCATTCTTTCCGGAACGGAAAAAAGAAAAAAGTACCCCCCATCATGGTGAACCTCTCCTTGTGAT
CGGGATGAGGTAGATGCCTCCCAGCCGGGGGGCGGATCGAATCGG
Found at i:35511 original size:30 final size:30
Alignment explanation
Indices: 35449--35521 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
35439 TGACATCTCT
** *
35449 AGTTTTAAATCCAAATCTTCTAACATCCAA
1 AGTTTTAAATCCAAATCCGCTAACATCAAA
* * *
35479 AGTTTTCAATCCAAATCCGCTCACATTAAA
1 AGTTTTAAATCCAAATCCGCTAACATCAAA
* *
35509 AGTATGAAATCCA
1 AGTTTTAAATCCA
35522 CGTAACACTC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (30 bp):
AGTTTTAAATCCAAATCCGCTAACATCAAA
Left flanking sequence: Indices 34949 -- 35448
GGGATGATGGTCCGGAGTGGGTCACGACTTCCCCACTCGAAACATAACAATAAATACCAGAAAAA
GCACAAAATACGTGAGAGATCACGTAAAGGCGAAGATATGTAAAGAATAAAGCTATTAGAAGGAT
CGTTAAAAATTTAAGAATAATTAAAAGTTTTTTAGACCCAGCGAGAACCAAAAAAACGATAGAAA
AATATGCAACAAATGAGTAAAATAAAAGAAAAGCAAATATTATTACCGGAGGTCATTGTTACTTC
TGGTCCTAGAAAACGTATAAAAGAAACTGCAACGAAACTACCGAGCAGGGGAATAAATACGAGAA
GTCTCTGCACGTATTCCCAATAACCATAATATTTGGACATTATATTAGAATTAGATTTATCATTA
ATGTCTGAATTTGATGAATAAAACCTATTATTTTTATACCCCGAACCCCAACTATCCAAGACACC
ACAATCTGAGTTTCTTAACATAATAGCAATGCTGCTGACATCTCT
Right flanking sequence: Indices 35522 -- 36021
CGTAACACTCGATTATTAGAAATCCCTAACATGGGTAGGGCAGTCCCAGGGTTTTTTCTCAAGAT
AAGCATGATTTGATTTTATTTTATTAGTTTTACTATTATTCGTCGTTAGAGGTAAGGTCTACACA
ACTTTTTTGTGCCTAAAGATCTATACCTCTTTTATTTTTAGGCGCACTCATAGGTCAACACCACT
TTTGTGTGTATATCCCTAAAGATCTATAGCTCTTTTATGTGTATATCCCTAAAGATCTACACCTC
TTAAGAATTGTCATGGCATTTTCGAACAATCAATCTTTTTCGCCACATCAAGGTGGCCACATCAA
GGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTAC
ACCTCGTCTCACCCCCCCGGGACGGACCACCCGATCGATGAACACTAGAACCGAACTCGCCCAGC
AAACGGGCCGAAGAAGCAAGAGCAATTCCGGCACTATGAAATGAA
Found at i:35783 original size:33 final size:33
Alignment explanation
Indices: 35709--35783 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 33
35699 TCATAGGTCA
* *
35709 ACACCACTTTTGTGTGTATATCCCTAAAGATCT
1 ACACCTCTTTTATGTGTATATCCCTAAAGATCT
* *
35742 ATAGCTCTTTTATGTGTATATCCCTAAAGATCT
1 ACACCTCTTTTATGTGTATATCCCTAAAGATCT
35775 ACACCTCTT
1 ACACCTCTT
35784 AAGAATTGTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.39
Consensus pattern (33 bp):
ACACCTCTTTTATGTGTATATCCCTAAAGATCT
Left flanking sequence: Indices 35209 -- 35708
TGGTCCTAGAAAACGTATAAAAGAAACTGCAACGAAACTACCGAGCAGGGGAATAAATACGAGAA
GTCTCTGCACGTATTCCCAATAACCATAATATTTGGACATTATATTAGAATTAGATTTATCATTA
ATGTCTGAATTTGATGAATAAAACCTATTATTTTTATACCCCGAACCCCAACTATCCAAGACACC
ACAATCTGAGTTTCTTAACATAATAGCAATGCTGCTGACATCTCTAGTTTTAAATCCAAATCTTC
TAACATCCAAAGTTTTCAATCCAAATCCGCTCACATTAAAAGTATGAAATCCACGTAACACTCGA
TTATTAGAAATCCCTAACATGGGTAGGGCAGTCCCAGGGTTTTTTCTCAAGATAAGCATGATTTG
ATTTTATTTTATTAGTTTTACTATTATTCGTCGTTAGAGGTAAGGTCTACACAACTTTTTTGTGC
CTAAAGATCTATACCTCTTTTATTTTTAGGCGCACTCATAGGTCA
Right flanking sequence: Indices 35784 -- 36283
AAGAATTGTCATGGCATTTTCGAACAATCAATCTTTTTCGCCACATCAAGGTGGCCACATCAAGG
TGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACAC
CTCGTCTCACCCCCCCGGGACGGACCACCCGATCGATGAACACTAGAACCGAACTCGCCCAGCAA
ACGGGCCGAAGAAGCAAGAGCAATTCCGGCACTATGAAATGAATTCGGGTTCTTGACGTTTATTA
ACGAATTGCTCTTTAATGGATTGCGGGCCTCAACTCGCAATTCAATAGTTTAAACTAACGAATTC
TTGAGCGCCCTTGACTAAGACTAACGAATTGCCGCGAATCCGTTTAAGTAGTTCCGAACTTCAGT
TTCATGTAGTTCCGTCAGGCCCCTTTACTGTTAGGGGCGCAGGAGCGCACTTCCGTTTTCTACGC
TGGGCACAGGGACGCGAGAACCTGACGTTAGGAATGAGAAAAGTA
Found at i:35842 original size:14 final size:14
Alignment explanation
Indices: 35823--35850 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35813 AATCTTTTTC
35823 GCCACATCAAGGTG
1 GCCACATCAAGGTG
35837 GCCACATCAAGGTG
1 GCCACATCAAGGTG
35851 ACAGGATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14
Consensus pattern (14 bp):
GCCACATCAAGGTG
Left flanking sequence: Indices 35323 -- 35822
ATTAGATTTATCATTAATGTCTGAATTTGATGAATAAAACCTATTATTTTTATACCCCGAACCCC
AACTATCCAAGACACCACAATCTGAGTTTCTTAACATAATAGCAATGCTGCTGACATCTCTAGTT
TTAAATCCAAATCTTCTAACATCCAAAGTTTTCAATCCAAATCCGCTCACATTAAAAGTATGAAA
TCCACGTAACACTCGATTATTAGAAATCCCTAACATGGGTAGGGCAGTCCCAGGGTTTTTTCTCA
AGATAAGCATGATTTGATTTTATTTTATTAGTTTTACTATTATTCGTCGTTAGAGGTAAGGTCTA
CACAACTTTTTTGTGCCTAAAGATCTATACCTCTTTTATTTTTAGGCGCACTCATAGGTCAACAC
CACTTTTGTGTGTATATCCCTAAAGATCTATAGCTCTTTTATGTGTATATCCCTAAAGATCTACA
CCTCTTAAGAATTGTCATGGCATTTTCGAACAATCAATCTTTTTC
Right flanking sequence: Indices 35851 -- 36350
ACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACACCT
CGTCTCACCCCCCCGGGACGGACCACCCGATCGATGAACACTAGAACCGAACTCGCCCAGCAAAC
GGGCCGAAGAAGCAAGAGCAATTCCGGCACTATGAAATGAATTCGGGTTCTTGACGTTTATTAAC
GAATTGCTCTTTAATGGATTGCGGGCCTCAACTCGCAATTCAATAGTTTAAACTAACGAATTCTT
GAGCGCCCTTGACTAAGACTAACGAATTGCCGCGAATCCGTTTAAGTAGTTCCGAACTTCAGTTT
CATGTAGTTCCGTCAGGCCCCTTTACTGTTAGGGGCGCAGGAGCGCACTTCCGTTTTCTACGCTG
GGCACAGGGACGCGAGAACCTGACGTTAGGAATGAGAAAAGTAATCAACCGCTTTTAGAAAACTC
GAACTTACTCCACCTCTTTCACTTTAATTTTGAAATCCGGCTCGC
Found at i:38912 original size:20 final size:19
Alignment explanation
Indices: 38882--38919 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
38872 CCACGAGCAG
38882 CAAGCAACAAGCAACGGAA
1 CAAGCAACAAGCAACGGAA
38901 CAAGCAAACAAGCAACGGA
1 CAAGC-AACAAGCAACGGA
38920 CGAGCGCGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.53, C:0.26, G:0.21, T:0.00
Consensus pattern (19 bp):
CAAGCAACAAGCAACGGAA
Left flanking sequence: Indices 38382 -- 38881
GTCTGGTCTTGCGGTGCACTCACTCCCGTTACGAGAATGAAATGACGCCCCACCCCAGCTCGACT
CGAGACCAAGACTCCTTACTTATCGCACCAATAGCGGCACTGAGCGGCCGGAGATTGATTGAAAA
GGCAGCCCAGCCCCTTTAGTGATAGTGATAAAGAGCACACACAAACCTCCCCTGATCCACTAATC
ATCATCTCATCTGGCGCGAAGCAAAAAGAAAGGTCCTTCCTTCCCAGCCGCCTACCTACTCGTGC
TTGTAGCTCGATCGGAGGTCAAGAGTTTGGTCCGGCGGAAAAACAGAAGTCGTCCGTATCAAGTG
ATACGTGAATTGCTCAGTAGTGCTTCGCTACTTGACGTTGCCCCGCTGGCGGAAATAGCTTAATG
GTAGAGCATAGCCTTGCCAAGGCTGAGGTTGAGGGTTCAAGTCCCTCCTTCCGCTCCTGGCTTCG
TCGTTTAGTGGTAACGAGTGGAGTGCATAAGCACTCCACGAGCAG
Right flanking sequence: Indices 38920 -- 39419
CGAGCGCGCTAGCGCGAAAGCCGTAAGGCGTTAGCAACGCGCATGCATCCGTTTTCTTGCTGAGC
GCGAAAGCCGTAAGGCGTTTTCTTGCTGGAACGGAATTCCATACAATACGGAATTCAATACTCCG
ATCTTCCTGGGGATTCATCACTCACTGGCTAGGGGTTTAGAATCCAAGCATGGGCATCCGCAACT
AAGAGGGAGCAGTAGATCGTCGATTGAAGAGCCAGGTCAGTCAACTTCTATTGGGACTTCTATTG
ATTATTGATTCGACTAGAGGGACTCCTAGCAGCAAACTTGGCGGAAGGGCCCCCATGGAGACGCA
GGAGATGCAGGAGCCACCAGCCGGGTCGACCAATGAATGATAGGCCAGAGGGAGGGGCTCATTCG
ACTAATCAGTGATCCCTGGGCCTACCTAGCACAGATGCCCCTGAGGGGATTGGTTGATCGGAAAG
CTCCCCGTCGGCCGGGAAGGGATTTTTTTATATGGATTTTTTACA
Found at i:45019 original size:43 final size:43
Alignment explanation
Indices: 44958--45086 Score: 258
Period size: 43 Copynumber: 3.0 Consensus size: 43
44948 ACCAAACCAG
44958 ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
1 ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
45001 ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
1 ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
45044 ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
1 ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
45087 CTCGGTTAAA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (43 bp):
ATAAGAAGGCATGATTTTACTTAGTTTCCTTTCCCATGTCTTT
Left flanking sequence: Indices 44458 -- 44957
GTGATCCCCATTACAGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGTGGAATTAGACC
CGCTATTAACGTCGGCTTATCTGTCAGTCGCGTTGGGTCTGCCGCTCAGTTGAAAGCTATGAAAC
AAGTCTGCGGTAGTTTAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTT
GGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACT
GAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTATAGTCATTTATGCAGCTGTGA
AGGGCTTCTGTGATCGAATGCCACTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAACAAGT
ATAAAACCAGAATTACTACAATCACTTTTAGAAAAAGGTGGGTTAAATAACGAAATTAAAATCGA
ACCAGATGCTTACTTAAAAGAAAGAGCTTTGCCTTACCAAACCAG
Right flanking sequence: Indices 45087 -- 45586
CTCGGTTAAAAACCGCGGCGATTTCCGACAAGTCTTTCTTCTTTAGAGCAAGAAGCGGAACTACA
GGGATGAAATGATATTATGATTACTCACTTTCTCACTGAGCCGGAGATCACTGCATTTGTGATCT
TCGGCTTAGGGCTGACTGCCCAAATGGCATTTATAACCCTGTCTCGTATAAACTTTAACCACTTT
ACAGGGCTACCTAGGGATGTAGCCATGGAGTGCATATCAGACGTGGCAGCAGACGAGCTGATCGT
GGGGATCGATCAGAAGCTGGGCGTCCTATGCGACAAAGCAGGAGTTCCGTTACCCCAGGAACCTT
ACGGATTTAGTCATTTGATGTTCAATTCGGGTGATGGTTTCGATTATATCCACTTCTGTTATCGT
GATTTATTGGCGCACGGCCTAACGTCTGAAACTTTTTCATATGCAATGAACGTCCTGGCCGTGCT
GCGGGCTCAAGGGCTGGATGTCTAGTTAGGTGAATCTTCTTAAAG
Found at i:50181 original size:22 final size:22
Alignment explanation
Indices: 50140--50182 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
50130 GAGCGTACTA
*
50140 CTAGCGCGAAAACGGCTGCGCC
1 CTAGCGCGAAAACCGCTGCGCC
* *
50162 CTAGCGCGAAAGCCGTTGCGC
1 CTAGCGCGAAAACCGCTGCGC
50183 GTTAGTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.35, G:0.33, T:0.12
Consensus pattern (22 bp):
CTAGCGCGAAAACCGCTGCGCC
Left flanking sequence: Indices 49640 -- 50139
AGAGGTAATCCTTGGGGAAGTAGATCTCCTCCCGGGTAGTTTGTCGAAAGGATCCGGTCTCATTG
TAATTCGAAAATTCCCCTAAGTAGATTTTTCCCCAACTCAATGCCAATGGAGAAATAAACCACTA
TTCCCAGCCCACCCAACCCCTAAGAAGCGAATAAGGAGTGATCACCAATAGAAGGAAGCATAATT
GGTTGACAAGACAAGACTCAAGCCCCTACCTCTGCCCTCGGCTTATCCTTCGGACCCTGCTACCC
TCAGCTATTGTCAAACTTAACAGAAGTAAGGTACCAGCCTACGTTGGCAGCCAGTGGAACCTCCC
TATAATGAAAATGGGTGCCTCTAAGCGGCTTTGACATTTGAATACAAACTAGTCGTACTAACAGC
TTGGCTTTTTGTTGTCTATCGGCAGCACTTACATACTTAGCTCTATCGTTCGAGAAGGCATACCG
ATTTACGGTATCCCTTCCCTCAACAAGCCACTCCAGAGCGTACTA
Right flanking sequence: Indices 50183 -- 50682
GTTAGTCACGCGCGAATGAACAAGTATTTACACTACTATCAAAAGACTTCTAGAGGGCGACTCCC
ACTGGAGGAGGGGCAGATGCTACTATATGCAATGCAAAAATATATTCAATAAGAGTGCCGTGCCC
CCTTGAGCACCCTTATCATTAGACCCGCAGAGCCTTGGCTCACGTTTCACTATTCCTAAGCTAGA
TTGGTGAGCCAACCATTTATTAAAGCTGTCTCTCTTCTTATGCGCTCGACCGCAGCTAAATGATG
TCGGCCTGGTACCGATAATTCCTCTAACTCTGCCTGGTCCCTTCGTATGTCAGGCCAGACAAGAA
CTAGTCGATAGGATGGTCTGGTCCAATACCCTTACAAGTCTTTACTTTGATATCTACTTATATCT
ACGTCTAGCAACTTCCAGATACTTCACAGCACGACCGTCTCCTTTCACACGACCAGCCTTCTGTC
ATCAAGTCTGCTGTCCATAAGTCCGTAACGTTCTCTTCGTCTCTC
Found at i:88265 original size:20 final size:19
Alignment explanation
Indices: 88240--88277 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
88230 AGCGCGCTCG
88240 TCCGTTGCTTGTTTGCTTGT
1 TCCGTTGCTTG-TTGCTTGT
88260 TCCGTTGCTTGTTGCTTG
1 TCCGTTGCTTGTTGCTTG
88278 CTGCTCGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.00, C:0.21, G:0.26, T:0.53
Consensus pattern (19 bp):
TCCGTTGCTTGTTGCTTGT
Left flanking sequence: Indices 87740 -- 88239
TGTAAAAAATCCATATAAAAAAATCCCTTCCCGGCCGACGGGGAGCTTTCCGATCAACCAATCCC
CTCAGGGGCATCTGTGCTAGGTAGGCCCAGGGATCACTGATTAGTCGAATGAGCCCCTCCCTCTG
GCCTATCATTCATTGGTCGACCCGGCTGGTGGCTCCTGCATCTCCTGCGTCTCCATGGGGGCCCT
TCCGCCAAGTTTGCTGCTAGGAGTCCCTCTAGTCGAATCAATAATCAATAGAAGTCCCAATAGAA
GTTGACTGACCTGGCTCTTCAATCGACGATCTACTGCTCCCTCTTAGTTGCGGATGCCCATGCTT
GGATTCTAAACCCCTAGCCAGTGAGTGATGAATCCCCAGGAAGATCGGAGTATTGAATTCCGTAT
TGTATGGAATTCCGTTCCAGCAAGAAAACGCCTTACGGCTTTCGCGCTCAGCAAGAAAACGGATG
CATGCGCGTTGCTAACGCCTTACGGCTTTCGCGCTAGCGCGCTCG
Right flanking sequence: Indices 88278 -- 88777
CTGCTCGTGGAGTGCTTATGCACTCCACTCGTTACCACTAAACGACGAAGCCAGGAGCGGAAGGA
GGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTTCCGCCAG
CGGGGCAACGTCAAGTAGCGAAGCACTACTGAGCAATTCACGTATCACTTGATACGGACGACTTC
TGTTTTTCCGCCGGACCAAACTCTTGACCTCCGATCGAGCTACAAGCACGAGTAGGTAGGCGGCT
GGGAAGGAAGGACCTTTCTTTTTGCTTCGCGCCAGATGAGATGATGATTAGTGGATCAGGGGAGG
TTTGTGTGTGCTCTTTATCACTATCACTAAAGGGGCTGGGCTGCCTTTTCAATCAATCTCCGGCC
GCTCAGTGCCGCTATTGGTGCGATAAGTAAGGAGTCTTGGTCTCGAGTCGAGCTGGGGTGGGGCG
TCATTTCATTCTCGTAACGGGAGTGAGTGCACCGCAAGACCAGAC
Found at i:100529 original size:30 final size:30
Alignment explanation
Indices: 100485--100541 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
100475 CGGCTTCTTT
* * *
100485 GAGTCTAGCTTCCATTAGGTTCTTCTCAGG
1 GAGTATAGCATCCATTAGGTCCTTCTCAGG
100515 GAGTATAGCATCCATTAGGTCCTTCTC
1 GAGTATAGCATCCATTAGGTCCTTCTC
100542 TTTGAGTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (30 bp):
GAGTATAGCATCCATTAGGTCCTTCTCAGG
Left flanking sequence: Indices 99985 -- 100484
GAGGTTCGCATTCAGGATTCGCACTTGCTCTTTTCAAATAAAGATCGAAACAGTGGCACGAATAG
CTATCATCCCGTGTGGAGTCAACTCATCCCAGTCCGTTTGTTGAAGATGCGAAGTTCCTTTGTAG
AAAGCGCGCTCCCTCAATAATGCGCCTCTCCGGTCGAGTGAAGGTGCCGGCGTCTGCTGGAACAG
ATTGAATTGAACCAATTGCCTGTCAATTGGTTCAATCAATTCCTTCCGCTTTCTCACCTCTAACA
GAAAGAACCGTTCGTTCTCCTTTCGTGTGAAAGCCTCGTTCACACAAAGCTGGTGGCATCGCAGC
CTTCCCTACTCGTTGGTGGATATTTGCTACTGCTTTGCTGAAAATAGCACATTGCCCTCAGTTCA
CTACTCTAAGCTAGAGTTCACTTGAATAAAGAGGGCCCTTAGAGAGCGCATTGAAAAGATAAGTC
GACACATTAGAAAAGCAGACTCAAATTGGTTCACCCGGCTTCTTT
Right flanking sequence: Indices 100542 -- 101041
TTTGAGTTTAGGTCTGATCTGGCCGCTATCTGTCCAATATGCTGTCTTCCCTCCAGTAGGCTATT
CTTTTCACTTGGTGGGGTAGGCCTACAAGACCCACTAGACTGGACTGGACTGGGGCCATATCTCC
TAGTCGAACTGAGATGCTGTAAGAGAATGCCGGCGCCTTTGGAGAATCCATTGAGATCCTGAACT
GAGAGCAGTTTTCCTTGCATAGCCTTGAGAATAGCCGTCTCACTAGGGTCCTAGCTCCTTTCCTT
AGAGAGTTCTTTCTTCCTTCGTCTGGACCAAGAAGTAGCGTCAGGAGGCGGAAATGTGACCTCGG
AGTACTACCTATCCCATCCAGTCCGCCAGTAGGCTATTCTTTTTCACTGCCTATGTCTTCGCTTA
GGCGCTTACCTTAGGGACCGATCCTTCCCTCCTACTACTACGACGATCTACTCCTGGCCCTTCTA
GGCCTACTTACAGCCTCTTTTTGGCTATGCTCGCTCCTTGTGGTT
Found at i:109333 original size:97 final size:97
Alignment explanation
Indices: 109165--109343 Score: 349
Period size: 97 Copynumber: 1.8 Consensus size: 97
109155 CTTCATATCA
109165 TAAAGGAATAGAACCGGAAAGCTTTGATGCGAGAAAAGTCAGTCCATCCGCACTATAAAGACAGA
1 TAAAGGAATAGAACCGGAAAGCTTTGATGCGAGAAAAGTCAGTCCATCCGCACTATAAAGACAGA
109230 CAGATTCTCTCTCTTCTTTGTTTGAAGTGAAG
66 CAGATTCTCTCTCTTCTTTGTTTGAAGTGAAG
109262 TAAAGGAATAGAACCGGAAAGCTTTGATGCGAGAAAAGTCAGTCCATCCGCACTATAAAGACAGA
1 TAAAGGAATAGAACCGGAAAGCTTTGATGCGAGAAAAGTCAGTCCATCCGCACTATAAAGACAGA
*
109327 CGGATTCTCTCTCTTCT
66 CAGATTCTCTCTCTTCT
109344 GCGTATCGCT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 81 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (97 bp):
TAAAGGAATAGAACCGGAAAGCTTTGATGCGAGAAAAGTCAGTCCATCCGCACTATAAAGACAGA
CAGATTCTCTCTCTTCTTTGTTTGAAGTGAAG
Left flanking sequence: Indices 108665 -- 109164
GCGTCACTCCACTCCTCCCGACCACTCAGCCCATTAGAAGAGGCAACAAACAAGAGCATATTTTT
TAGATATCCTACAATTAGAGCTATTAGCTTAGCTGGAGTTTTGCTTGGCCGGCTGAGTACGGAAC
GCTAGCTTTCTCTACTTTAACACTTCGTTCACTGCTGGCCCGGAGTAAGACATGCCACCTTAATG
CACTAGCCAGTTAGAAGGATTTGAACTCTTACTGAACCGGCCTTCGAGACGAAAGGAACGATAGC
AGGCAACATGAGTATGCTACTTCCTGCGAGAATGCATGATAATGCTTTGTCATGTTCCTACTCCA
ACTCCTGCGAGAATGGCCCTCCCTACTACAGACTACGCTCGGAAAGCAGGATTCACTTCGATAAG
CAAGAAGAAAAGAGAAGTCCCGAGTGAAAACTACTTTCCTTAGGATGTTTAGGGCCAAGTCTCTA
TCTAAAAAGAGCTTCTTCGTCGATAACAAGCCTTTCTTCATATCA
Right flanking sequence: Indices 109344 -- 109843
GCGTATCGCTTTATATAAGCTCCGCTGCATATCAAGCTGACCCGCTCACCTCACTTAGATCAATT
TCCTCTTCTCTTCTCTTTGTCCTGCTCGATCTCATGCTCATTGAATTCCTCCACTTGGCCCAAGC
AAACAAGCGAATATCCAAGTCCGGAGTGTGCGTTTTCTTGCTGGAGGAGAAGGGCCAGTCAATGC
ATTCGGACCTTTGAAGGCAAATTAGCGAGAGTTCGCAGTAGTCTAGTAGTACCTCCACAGAAGAG
CGATTTCACTCGCCCTCTTACTAAAGATAAATGGCCGTCTAGCGTGATTCACTCATCAGACAGCT
GCCAGCTAGAAGAGAGATCGCTTGAAGAGGACCGTGGGCTTTCCCTTCTCTATGGTAGCATGGTC
TTCTCCTGGGCTTTCTCTATCAAAGTAACGTCAGTCGGGGAATGAATACTGGAAGTCGAATCGAG
ATCGACCATTTGAGAAGCCTCTTCCGTTAGTCTATTTAGGCCCCC
Found at i:111052 original size:12 final size:12
Alignment explanation
Indices: 111031--111060 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
111021 TTCACTTTTG
*
111031 AAAATTCTCTTC
1 AAAATACTCTTC
111043 AAAATACTCTTC
1 AAAATACTCTTC
111055 AAAATA
1 AAAATA
111061 GCACTTACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATACTCTTC
Left flanking sequence: Indices 110531 -- 111030
CCCCTCTCAATCCGGAGTCTCCCTCGACTGGTCCCTCCTTTCTGATGAAATAGGGCCTTCGAAGG
CCTTTCACCCCCTTCTCGAGTCTAACGTGATGGATGCGAAACTGCAGTTTAAACGCGTTCTAGCT
GCCTTGTAGCGGGTGCGCGCTTCTATGGAAATGGAAGGAGGCCAGTTGATCATTCTACTGCAGGG
TCCGAAGGAGAGGGAGTCGTAGTTGGTCCCACCGAGAAGGGAGACTCCTCTTCCTGAAAGTCGAG
GCCGATTCGTTAGCGTAGTAGTTTGAGAATCTAGATTAGGTTCGTGGGCTGTGATGTATGGGGTC
AGCCCTTAACTGAAACAGAATGATTTTCTTTGGTTGGGACAGCAAAAGAGGGGGCAGGATGGAAG
AACTGATGGACGCGGTAAGACAGTGAATGGGACTTTCATCGTGTTTTACCGACTTGCTGGAATTC
GAAAACCAAATGATATTAAGTTCATTTTTCCTTCGTTCACTTTTG
Right flanking sequence: Indices 111061 -- 111560
GCACTTACCATAGAAAATGGGGAGTCTCCTCTCTGAGGATCTTTTCTATAGGGAAAGAGATTCAT
GCGATTTAAGCTTTGTACTCTCGCTCCTTTTTGGAGCGGTATACCGAAAGGATACCAATGAAGCC
GACCATTAATGACTAGTTCGAACACCAGGATCGGTCTGATCCCTTAGACGAAATTTGTTAAAAAT
CTCGTTGGGGAGTCGAACCCACACAAGAACGACCATTAAATTGAACTCTAACTGTCGCCCGCTAA
ACCACTTAGCTACCGGGATTTCTTCTCACACAGTACCCTACGATATTCTCTAAAAGAAAAGCTTC
AATCGCATTACATACAGTGATTCAGAAAGAAGAAATCCATGCAAGATTTCGCGCATCAAAACCCG
TCTCAAGTGGCTAGGGGGCGGAAAGGACGAACTTCCTTTTTAATTTAAGCAGCGGGATATCTTTT
CATTGCTAAGACCGCCTCATTTCGAAACCGGATTCGCTACCCGAT
Found at i:114846 original size:24 final size:24
Alignment explanation
Indices: 114814--114861 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
114804 CGATAAAAAG
114814 AGTTTTTTTCTTTTTCTTCGTTAC
1 AGTTTTTTTCTTTTTCTTCGTTAC
114838 AGTTTTTTTCTTTTTCTTCGTTAC
1 AGTTTTTTTCTTTTTCTTCGTTAC
114862 GATGAAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.17, G:0.08, T:0.67
Consensus pattern (24 bp):
AGTTTTTTTCTTTTTCTTCGTTAC
Left flanking sequence: Indices 114314 -- 114813
CGTGCCATTTGACTCTATCTGAGTAACGTACGATCTATAGGTTTGCTCGGTCAAAAGATCCCCGA
AGGGGTAAAAGATAAAACCTCGAATTCTGTGTCGATTGTCCCGAATAGAGGCGGGATCGAACCCA
TCAGCCACCAATGCTGCCTCCACCCACCGTTCAATTCGAAATTGGTCTTCCACCACTTCCATGCT
TTCCCGTAGTGTACGGTGAGGCCGGAAAAGATGATGTACTAATGAGCGGTTATAAAGTTCTTGCC
TTCGTTCCATATCCGGTATAAGAGGATTTGGTAATTCGGGTACAAGAACCTGCTGAGGTTGAGGT
ATGGGCGGTGCTTCTTGTGGAAGAGCCGGTTCTTCGCCCGGCGGGCTAGGGCTAGGTGTGAAAGC
GCTTCGGCCGCCGTCGCAACAGGAAATGTACGGGGCCATAAAGTGGATTAGGCCGAACAGACAAA
TAAAAAAGAAAGCGGCACCCGTCACTTCAAATAAACGATAAAAAG
Right flanking sequence: Indices 114862 -- 115361
GATGAAATAGAAATAGTAGAATTTGAAAAAATAGGAGAGATAAACAAATAACAAATGAGATCTTT
GTATCCCATGATGGGTTCGGAACGAAATCACTAGGATTTAAGACAGGACACATACAAAGATCGTT
AGCAAAATTGAGTAGAAACATGACTTTTTTCAACGATGCTTACTTGCTTGGCCTTGTAGAACATG
GATTAGCATTATGTCATTCCTACAAGGGATCCCCCATCCAGGATTGGAAGAAGTGCTATATGAGG
ACTTCGAGATAAAATAGAATATGTTTCTTTCCATTCCTCGTGAGCCACTTATTTCTCCGAAACAA
GAGATCAAAGTGCTTTTCCTCCGAATCCTCGTGAGCCACTTTACCACTAAGTCGGCGGCGTTACA
CCATTGGGATACTTTGAATAAACTTGAGTACATATAGGATACACCGGTACTAAAACCTTTTCTCG
AGATATCTTCCAAACTGTTGGGGTCGTTGCGGGGCCTCAAATAGT
Found at i:121226 original size:27 final size:27
Alignment explanation
Indices: 121188--121271 Score: 132
Period size: 27 Copynumber: 3.1 Consensus size: 27
121178 GGTGTTAGGG
*
121188 ACCATCGCTGAGTCGAACGAGACGGGT
1 ACCATCGCTGAGTCGTACGAGACGGGT
*
121215 ACCATCGCTGAGTCGTACGAGATGGGT
1 ACCATCGCTGAGTCGTACGAGACGGGT
* *
121242 ACCATCGCTGAGTCGTACTATACGGGT
1 ACCATCGCTGAGTCGTACGAGACGGGT
121269 ACC
1 ACC
121272 TTCGATCCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (27 bp):
ACCATCGCTGAGTCGTACGAGACGGGT
Left flanking sequence: Indices 120688 -- 121187
AGGAATGTGGAAAATAGCCTGGCAAAGGCATCTTCTATAGATGGACCGAAACTAAACTACTAACG
CTTTCTTCAAGTAGTAGAAATGTTATGAATGAACACGAGAAGAGGGGAATTGCAGGATTAATAGT
TTCGATATTACAAAAGCGACGGGTGACCTACCAAAGCATTAACGATGGGTTCTCAACTTTCAGAT
GGAGGGGGTACGATACATTTTCAGTGTACCTTGACGCTGTAAATGCTAACATAGAAGCAATGAAT
TTATCGATCTGCTTAGGGTTTAAAATATGGTACTATCTAATGCCAGTCCTTATGCAGTCTGTAGG
GTATTCTAATTATAATGAAATCCTAAACCCTGAGGTGGTAAATTACATCAAGGACAGATCAAGAG
ACTGGTCTGCCCCGATGATCCAGCGCTCCATAGATCTATGCGATCATATGTATAATATGATTCAG
GCGGGCACGCTCGAAAGAGGTGGTGCCAGCTCCTCGGTGTTAGGG
Right flanking sequence: Indices 121272 -- 121771
TTCGATCCCTTGTTGGAAATAAGAAGAGGTGAGGAAACCAACGTGGAATACCACAAGAAAGTAAG
ACTTACTAAAGTAGTGATTGCCTGCATCACTGTTTGTATATTAAACAGTTTATTCGTTACTAACG
CCTGCGGAACAGATCTATATCAACTATATATTGATGGAATGAGTTCAGAATAAAAAGAAGAAAAG
GGGATATAAACTACTGGATAGATTAGATTGCGTCTTATTATAAAGTCTGTTATCATACGAGTGTC
TTTATCCATAGGTCAAAATTACTCTGTCTAAAGATTGGAAGTATTCCCTTGGCGAGCCATTGATC
AGAAACGCAGGGTGACACATTCCATAATTAAGTCTACCCATCTGAAACCTAGCATGATAGACCGC
CTCCCATTCCACTCGATCATAGGCTTTACTAAGATCAAGCTTTAAAGCCATCTGACCACTTGTTT
GTGGTTCCAAAGATAATGAGCAATCTCCGCAGCGACAAACAAGAG
Found at i:139755 original size:16 final size:16
Alignment explanation
Indices: 139734--139766 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
139724 AAAGAAAGCA
139734 AGCATAATTTACTTAG
1 AGCATAATTTACTTAG
139750 AGCATAATTTACTTAG
1 AGCATAATTTACTTAG
139766 A
1 A
139767 AATGAAAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (16 bp):
AGCATAATTTACTTAG
Left flanking sequence: Indices 139234 -- 139733
GTCATAGATCGGGTGAATGCCCTTTCCTTTAGTTGCCCTTTCAGTGGAGTAACCCAAAGTGAGTC
TTTTTGCTCTTTCTTCAAGGCATCTAGCTACGGCGGAATCTTTCACTGCAGCACCTGTGCTATAG
ACCGGCTTAGATCTCGACCGAGGTCGAATGGTTTTTTGGCTACGTCAGAGCCTTACCTCATTCCC
AGCATGCTTCACAGCCATCGATCTTTGAATTCAATTCAAGAAGGGCCACAAACGAAAATATCATG
ATTGGGGCGCAGAAGCCCTCCATATCTTATGCATCAAAAAGGCTACTTGAGCCTACTGATTCTTC
TTATGGGGCAGTACCAAAAAAGATATGAAATAAGGGCACCCGAGTCCCTAACTGGAATCACGGAA
AAAGCCTCTTACGCAAGTATACAAACAGCTCTCATAGTTCAAAAAGACGTGTGCTAGGATTCTAA
TTGTACAAAGGCGGGGGCGTGAAGATTAATGAAGAAAAGAAAGCA
Right flanking sequence: Indices 139767 -- 140266
AATGAAAGGGGAACGCCCTGGGCACTACGGTTCACCTGGGTGCTCACTTGGAAGCAAGAGAGGTA
AGAGGCCACCTACGGGAGGTCTCCTTTCATTCCGAGCAGGGTAAAGAAAGAAGTCGTAGGCAGAG
ATACAGCAGGACCAGGAGGAAGTGCGGACAGATGGATTGATCATCGATCGCTTTCCAAATCAAGG
TGTCTTAAGCTTCTCCAGAAGTATCTTTGGCCAGAAGAAGGAATTATTATCGCTTAGTGCTTGTG
CTAAGGAATGACCAAAAGAATGATGAAGGAAATCGATTGGACTGGTCAACTCCTTTTTAGCTCTA
AAAGGGTAAAAGAGGTATTGGGGAATTGGCATGAGAAGTTCATAGCAAGGGTCATAGCATGGGTG
TGAAAGCCGGCTCCCCTCTTGTAGTGGTTCTTTCGGCACTTCCAGTCAGGGCCTGTTCACCATTC
CAAGCAAGCCCGATCCGCTCATTCACAATTGGTAGACGTTCCATC
Found at i:144691 original size:19 final size:19
Alignment explanation
Indices: 144654--144692 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
144644 AACAACAACT
* *
144654 ACTAAATAGCTAACTAATA
1 ACTAAATAGCCAACAAATA
*
144673 ACTAAATAGCCAAGAAATA
1 ACTAAATAGCCAACAAATA
144692 A
1 A
144693 AGGCGTTAGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (19 bp):
ACTAAATAGCCAACAAATA
Left flanking sequence: Indices 144154 -- 144653
GGGGTTTGATGAGATGAAACAACAACCCTCTTGCCTTGTTTCGGTTTGATCACTGATAGATAGCT
GGAGCGGGCCGATCCTTAAGAGCTGGAGGTTGGATCCATCCCAATGAAAGGTTCATGCCTCGCCC
GGTCGAGACAAGAATCAATTCGGTTGAGGGAGAGGGTTAAAAATAGCAAATACTAGACTCTCGTG
TGAGGAGGGAGAGGCATGCATAAAATAAAGTTGTTTTTGTTTACGAATCGGGCATTGAACCGCTC
GACCGTACTATGCCTTCCAAGGAGAGGGACAAAACCCGTTAATTGATTTATCAATTGTCATTGAT
AGGGTTGACCGGGTCAGGGATCTCTTCCGCCCATATCATCAAATAAGGATTTCACGCCCAGCAAG
AAAACGCCTTACGGGAACCTTACGGGAATCAAGGGCTTATATATCACTCTAAAAACAAGCGCAAG
CGCGCTAGCAAGAAAACGCACACTTTTTCAACTACAACAACAACT
Right flanking sequence: Indices 144693 -- 145192
AGGCGTTAGCCTTACGGCTTTCGCGCTCAGCAAGAAAACGGATGCGCGTTGCTAACGCCTTACGG
CTTTCGCGCTAGCGCGCTCGTCCGTTGCTTGTTTGCTTGTTCCGTCATGTTCTTTGAGCCGTATC
TTGCGGGTCGCCTTTTTTTTTGTTTAAGGGCTGCTCGCCCTACCGAAGTACCAAAGGCTTTCGGG
GCTTACACCCATAGTCTTTCAGTAGCGCCCTTAGAATCTAAGCCTTTTGAAGCGCCAGTAGTTGT
AGCTGTGGGTAGGGCTTTCGTTCTTATCGCTCCGGGTTCCGATCTATGTGACCTCCGGGCGGTAC
AAAGTACACCTCTTCCGTAGAGGCAGGTAGTAACCTAACCTTTAAGAGTCTGTTCAAGGGGGGAG
CCCTCTTATCTATCAATGGAAAGATCTCCGTGCGTGGCGTGATAAGGAATCCTAGAAAAGATCGA
TTGAGACTCCCTCCCCGGTCCCACGAAGATCTCTACGTACTTGTC
Found at i:160169 original size:26 final size:26
Alignment explanation
Indices: 160133--160184 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
160123 CTCTCCTTGC
* *
160133 TTTATAGCTCAGGGGATAGCTAAGGT
1 TTTATAGCTCAGGGAATACCTAAGGT
160159 TTTATAGCTCAGGGAATACCTAAGGT
1 TTTATAGCTCAGGGAATACCTAAGGT
160185 CAATTGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
TTTATAGCTCAGGGAATACCTAAGGT
Left flanking sequence: Indices 159633 -- 160132
GAGGTCTGCCCAATGAACTAATCCCTCGAACTGTTTTAGAACGGTGAGTGAGCGCCCCCTTTCAT
TTCTTTCTTTGAACATGGAATTTCCCTTTTCTTTCGCATGGATTTTCCCGAGAGTACCGTACCTG
CCTAAATAGAACCGCGGAGCCTTCTAAAACCTAATTTACCTTACTTACCGGACCCAAGGATCGGA
ACAAGATTTGCAATTGTCAGTATTTTAATTCCTTCTGCTGCCGCTACCCGGGGCATTCCCCTCCT
TTCATTCTTGACTTTAGGATTAACTATCTCGCTTTCCACAATATCGATGATTTTTCCTTTCTTTC
TTAACATGCACTCTCTTTCTCTGCCCTGCCTTTCTTCTCCGCCCTAAGAGGATAAGTTGACTTCT
CAAAAAGATCAGAGAATCACCACCAGACCCGGAACTATAGCTTCGATCAAGCTCTTTCTGGCTTG
AGAGTCAAGTGAGCCCTAGCTTTGGCTTAGTCATGCTCTCCTTGC
Right flanking sequence: Indices 160185 -- 160684
CAATTGAAAGCCACCCAACAGATTAACCTGACTTCGAGGAAAAGCTCCGGGTGCTTACCCTGCCT
TATTCATTGTATGGCTCTTTTCCTTTAGCTGAGGCGCGAGCTAGCCTGTCTATAGTGAGCCTCAA
CAGGGTCTCAACTAGTGAGAAAGGAAAGACTTGAGACAACTATTGCGCTAACGACTGGGCGAGTG
AGGTCCATAGATAACCATATACAATCTAGGGCTTCCCCCTAAATAGCTAAGAATAACAATCGATA
GAGCGGCAAACGAGGCTACCCTCCGCTGCGGGAATACCTGGCTAAGCGAATAGGGTGAAGAGGCA
AGTTTGAAATGCGAACATGAAATGAAATGTGAAAAGGTTAGCTTTGCTTTCCCCAGTCTGCCAAG
ATAGAGGAAAGACGAATAAGAAGCATTAAAATCGGTCCTGGGAATCAGAAAGTCATTCCGATCCC
TCAGTTCATTAGTGAGAAAGAGCAGTTCTAGGGGCTTAGGTCTGA
Found at i:170820 original size:18 final size:18
Alignment explanation
Indices: 170797--170841 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
170787 TTCACAACCT
170797 GGCACCCCAACATTAGGA
1 GGCACCCCAACATTAGGA
*
170815 GGCACCACAACATTAGGA
1 GGCACCCCAACATTAGGA
*
170833 GGCAGCCCA
1 GGCACCCCA
170842 TTAGGATCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.24, T:0.09
Consensus pattern (18 bp):
GGCACCCCAACATTAGGA
Left flanking sequence: Indices 170297 -- 170796
TCTAGTCATTTTATCTATTGCGTTGAGCAATTCCGGTTAATAAAGAGTAGGGAGAAAGGCTCAAA
CTAAATCCTGAGCTTTTCCTTAGCGGTATGAATCCGTAAGGGCGGAGAAGGCTCCAACACAACAG
GAAGGTTGTCCTCCCTCTCTCCTCCGCTGTCAGCCAAGAACGGAAAGCGGTAGTTAGTGGGGGGC
ATAAACTACATCAGGGAATGGAATTCCGCATCACGTTGATAATCATCTATCACTTGTGTGAATCT
AATGATAGGAATGACCAAGAATCATCGATTTCGGAGGTCGTACCGGGGAACTTGCTGATATAAAT
CAGGGGACAGAAGATCCAACTCTCGAGGAAGCGAGGGAGAATCATGCTCTTTTAAAGCTTTTCCC
GTGCCTCTCTGACTTTCTTTTCTAGTCACATAGCCAGCTGTCATTTCGCTTGCAGCCATCAAGAC
TGAAGGCGAGTCAAGAAGGAACGGAGAGTTTACAATTCACAACCT
Right flanking sequence: Indices 170842 -- 171341
TTAGGATCTGCATACGGTTCATGATAATTTTCTAACACCTATTGCTATTCGATCATTGAAGACGT
TTTTTCTCTTTTGGGTTCCTAACTTATTTCTTTAGTAAGGTCTTGCTTTCATTCGGTTTGAAAAC
AGGATCATTGGACCTCGCTCTCCCCTTTCGGTCTTCCTTGCTTTTCTCGGTTGCGAACTAGAGTC
CAATTCCCAATCAAGCAACAAGATATGGCCGTAGTACGGATACCGGCCCTCAGCTATCCAAGCCA
GGGATCATGTTGCTTACCTTATGCAAGAAGGTAATTCAATGCATCCAACTTTAGAAACCATGGGG
ACAAACGACCTTATAGGAATAGGCTCTTCGGTAGAATTCTGGATTGCACTTTCTTTTTTGAACTT
AAATGAAAGACCCCTTCCTAAAGGTACTTCAAGTGTAGTGAGACGAAGTGCTTCCCTTTACAGAA
GCGCGAGGGGAACGGGTCTCATTGGCAGGCTTTCAGGGGAGTGCT
Found at i:173794 original size:20 final size:20
Alignment explanation
Indices: 173769--173807 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
173759 TTTGACTTCG
173769 CTATTCATATATCAAGATCC
1 CTATTCATATATCAAGATCC
173789 CTATTCATATATCAAGATC
1 CTATTCATATATCAAGATC
173808 AGGGGATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (20 bp):
CTATTCATATATCAAGATCC
Left flanking sequence: Indices 173269 -- 173768
TGGGATTGGCTAGTGCCCTTTAAGGGTGACCCTTTCCCTTTCTCTTCCCCCCGATACCACTCATT
GTCTTCACCCGAGCAAAGATCTTCGAATTGCGTACAAAAGGAAGTTGCTGTCGGATCTCCCGATG
TTGGTATGGTATGACAAGACCCGGACAAGGCCGTGACACTCATCTATTCAACCCGACTTGACCTC
CTCGAATGTGATCCCAACTGCTCGTAGTCATAGTCAAAGCTCGGGCTGAGGCTTCTTCACCCGGC
CGGGGAGTCGGAACTATTGAATTGAACCTCTTCCACTCGGGAAAGCTGCAGTCCTTCCTTACCTT
TCATGGGATGAGACTGCCCCACTCTCTTGATTGCTGTCTGGCTTTGTTGGTTGCTTTCTTCTAGC
TGGAAAGAGTGCTGGAAGAGCCCTCCCCGTCTGAAGAGAAGAGATCCCTACTCTCGCTTTGTTAA
TTGGCCTTTTGTGCCTGTTATGATCTCTCTTCGTCTTTGACTTCG
Right flanking sequence: Indices 173808 -- 174307
AGGGGATCAAGAATCCAGTACTAATGTTCAATCCTTGTCTCTTTCCGTGTGTGCCAGCTTTCTTG
AAGGGCTAAGGGGGATCCTTCGAATCAACCTTCCTTCGGTTTTTCATTGTCTTTTTCTCTGCTTC
TTGCCATTCCGCTTCTCCTGTTAGTTAAAAAAGAGAAAAACATACACAACTAGCATACCAACCCA
TCAACAAACCCAAAGGGAAGAGCGAAGGCACTGTCGGGTGACAGGGACGAGCGGGATAGAATGGG
ATAATGAGCTAGAGGAGTCCATTCCCTCACTCGCTTAAACCGAATCGCTTTCCATCTTTATGACA
TCTGCTTTCAATGTCAGCTGGATTGCCTAGTTGATTGTTAGTTCGATTTTAACTAGTTTCAAAGG
CTTGATTGCCGCCTAAGAAATTCAGTCACGGTCGGAGAGAGTGACTTGTGTGACGCATCTATATC
TGGGGATGATCGGGTAAGTTCGCTCTACACTGTCCCTTAGATTGG
Found at i:175842 original size:15 final size:15
Alignment explanation
Indices: 175822--175851 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
175812 ATTTTAATTA
175822 CTAAATATCATATCC
1 CTAAATATCATATCC
175837 CTAAATATCATATCC
1 CTAAATATCATATCC
175852 ATTGAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (15 bp):
CTAAATATCATATCC
Left flanking sequence: Indices 175322 -- 175821
ATTCCAGCCCAGAAGCAAGAAGTCAAATAAGGGACGTGCTATGAATGCGGTAGCAATAATGCAAT
TTCTCCTCTTCGAACTGAACGTTAACTTCCCGTTAACCATTGTGACTATTGGAAATCTTGACTTG
GACCATTTGAGCACCCTTCCGGTCGAGCAGGCCTTAGAAGAGGTGGAGGACGCCGCAGATAATGT
GTTGATAGAGGCGACTGGTTTTAAGCTCTATCCAAACTTTTTGGAAGCCGGGATAGAGCTCACTC
CTGCGGTGACCTCTCATATAGCACAAGTCATGTACTTGCCCGGGAATATCCTTTTGAAAGAGTCT
TAGCAGGATATTCAGATTTGTTAGAGCATGGGACCCGGTCGGAGACGTTTTCCCTTGCGCTAGAC
GTGCTCCAGAATTTGGATCCTAATATTTTGTTACTCCAATGATGGCGTTTCTGATCCCATTCGTC
TTCTTAGCGAGGCTGGTCTATTATAAATATTAATCATTTTAATTA
Right flanking sequence: Indices 175852 -- 176351
ATTGAATTTAGCACCGGAAACTATTCTAGGAGAAGTTCGAATCCGTTCCGTTCGGATATTGATCG
GTCTTGGTTTTACATGGTTTACGCGTTACTGGTTCCCGGAAGAGTCAATATCTCCATTAGCTAAA
CCCTTTCTTACCCTGCCTTTGGACTCGTATTTTGTTCGTACACAATCAACGGAGGCCTCCCCGAC
ATATGTTGCAACGTCTCCAATAGCATGCTCGTACTTCGTCTTTCCCTTAATAAGTCATCAAATTT
GGTGCTTTTCGATCCCCTGTTGCTATGGGGAACAAAGGACGAAATACAATCGATTCCTCCATTTA
AGTGGTTCTCGCTTCTCCTTGTTCCTGTTCCTAACTCCTCCCCGGGTAGTTCCCAATGTTTGGCA
CTTTCCATACTTCGTGGGTGCAACATCAACAAATTCGCTCATGATCAAGTTACAACCTAAGATCT
ATGACCATATTATGTTAACTGTTCGTATTTCGTTCATTCCATCGG
Found at i:182894 original size:12 final size:12
Alignment explanation
Indices: 182877--182901 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
182867 GTTCCGAGCC
182877 AACAAGCAACGG
1 AACAAGCAACGG
182889 AACAAGCAACGG
1 AACAAGCAACGG
182901 A
1 A
182902 CGAGCGCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (12 bp):
AACAAGCAACGG
Left flanking sequence: Indices 182377 -- 182876
GAGACACGGTTGAAGACAACCCTCCTCCCCCCCGAAAGGAGAACGCACCAGGCGAAGAAATGGGG
CCCGTCCTCTGCTGCTATACGGCGGTAGAACGGATCCCCTAGTAAGAGAGTCAATCTCGATGAAT
GAGCTTCGATAGGTTCGTCCCGGTTCTCCGAGCCATCAGAACGGGATATTGGCAATGAAGCTCAA
CCTGCAAGGCACTCCACTCCTTCTGTAGCCAGCTCTCAAAGGTAAGAGCTAACCGGCATCTTATT
CTCTTTCCTGTTCCCTAGCCCCGAAGGGGAAGCAAGCAAAGCCCTCCAAACAAGCAGGCGGCATC
GGAACCAGAGAAGCACCAAGCTATTGGACCCCCATACTCTGAATATAAAATATCATCCACTCCAC
CTCCATCTCCTGGTTTTGTTCCAGTGCCTGTGCTTGCTCAAGCTCGCCATGAAACCCGATGTATG
AAAATGAAATAACGTATCTAAACTAAAGGAATCGAGTTCCGAGCC
Right flanking sequence: Indices 182902 -- 183401
CGAGCGCGCTAGCGCGAAAGCCGTAAGGCGTTAGCAACGCGCATCCGTTTTCTTGCTGCGCGCGA
AAGCCGTCTTTCTTGGCTATTTAATATTAGTTATTAGTTAGCTATTTAGTAGTTGTTGTTGTAGT
TGAAAAAGTGTGCGTTAGCCTTTACTCTAAACTCTAAGTATGCGTTTTCTTGCTGGGTGAGAGGC
CTTAGAGGGAATAGGGGCGTAACGGTCTAAAGGAGTTAGAGCTGCTATCCGGTGTATCGGGTTGT
TAGCGCGCTTTTTTTAGGTTATGAACTCTCCTTTCTTCGCTTTATAAGCGAAAAAAGCTCTCTAA
AGCCATTTTTCCTTCAACCGAAGGCTCTTGAAATGCCTCTATAGGAAGTCACTGTCTTGAGTGAA
AAAGATGTGATAAAAGCCTTTGTAGCACAGCCGCAGTTGTCTTTTCAAAGCTAAGCTATCGGTCC
TACTATGCGGGGGTAGTTGCCACTCTTTGGGCAAGGAGCTGTTAA
Found at i:185588 original size:4 final size:4
Alignment explanation
Indices: 185579--185631 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
185569 AAAGCCCTTG
185579 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA
185627 AGAA A
1 AGAA A
185632 AGAATGAATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
AGAA
Left flanking sequence: Indices 185079 -- 185578
TTCCCTGGAACCTACCTCGAGCCATCTTCGTCTTTCTCCGTTCAATCCGAACCTGGCTCAGCCTC
TCCCATATTGTTCTTGTAACTTTACCCGATCCCAAGTGGTAGGTCTTTCGTTCTCCTTTACCATC
TCCTTCTGGCTGGGAACCAAAGTGAGCCTTCATATTGGGCACCGGAGGCTGAGTCATGGTTGATA
AAGGCTAAAGCCGGTAGCAGTGGTCCCGAACCAGGATATCTAAGACCTTCGGGCCGAAGCCTCTA
ATTGATGGAAATCCTTTGCCTAAGGCACATTCACTAAGCACCCCTCTAACGGCAAACTCCTTCGA
ATGCGTCTGTTGACGATAAACCAAGTGGGACATCTAAGTCTTCTGCATGAAGATGAGGAGATCAT
AAGTACCTCGGACTGATTATTTCCTTGAATCTATCCTAAAGACGAAGGAATCGTAGGGGATCGCA
CACATTGGCCATTTCTGCTGCATTGCTTACGCGCAAAAGCCCTTG
Right flanking sequence: Indices 185632 -- 186131
AGAATGAATTGAATGAATGGGTTAATAACCCTTCCTTCATGGCTCTGTATAGGCTGTAGAGCCCT
CACAGGCTAACTCTCACATGCTGACGGGATACAAATGATAGAGATTAGGACCTGGAAGGGAGATG
AACTGATGTTTTTAAAGACACTGATGGGTGTTTCGACCTGGCTGGCTCCTTAGGTTGGATGATTG
CTGCCAGGGTCGCCTGCATTCTTTCCGAAGAATAGCTGGTTGGTTCCACCATCCAATAGTCAGAT
GTGGCTGTTCAACAATCACACCATCTCGTATCAATCTCAGCCCCTTGTAGATGGAGATTAGTTGC
TTGGCCTGTAGAAGCTCTATAGGTTGAGTTGGAGAAAAAGCCTGCCAGAGCCACTCACATCTTTC
GAAAGAGATGGAAATGATGACGGGAAGCCTGCCTATTCAAGTCATCAGGAATCCATCCTTTAGTT
GCATAGATAGCAGTAACAGGGCCATGAGGTTTTATTCAGCTTCAT
Found at i:186791 original size:16 final size:17
Alignment explanation
Indices: 186761--186794 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
186751 CCATTCCTTC
186761 CTCCAAGGCCTCTGACT
1 CTCCAAGGCCTCTGACT
186778 CTCCAAGG-CTCTGACT
1 CTCCAAGGCCTCTGACT
186794 C
1 C
186795 GAGAGAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.18, C:0.41, G:0.18, T:0.24
Consensus pattern (17 bp):
CTCCAAGGCCTCTGACT
Left flanking sequence: Indices 186261 -- 186760
GATTGCTTTGTATCCGGTTCTTACTCGCCTCTGATAGTAGGAATCGGTTGGCTATAGCCGAGCCA
TCCATCCTAAGTTGCTGGCTCATTAGCGGGGCTAAGGCTTATCAATGCTAATCATTGGTTCGGGG
GACAAAGAGACAAGAAGAGATAGCTGGGGTTTTCTTCCGTATCGGACTTAGCAGCTCTGCTGGAA
GTGGAACAGGATAAAGAGATGCAGAGCATTGCCTTGGTTCCGATAGAGGTGGAATAGAGCTTGGT
TCAGGTCCTGGCACTCGATGATGATGAAAATGCAGGTGGCACGCCCTTGGTTCAGATGAATGAGA
TGGCATAGGGGCTCACCTTATCTCGTGAGTAGGTCCCCATCAGGGAAGCTGGGAAGAGAGGAATA
GAATGTGCATGGCTCGGATTGGCTTGCTTACTCGCCTTTCCTCCTTCTCCAGGGGTGGTCCTTGA
GAGATGAAGACGGAGAGACATCGCTTGAGTTGATTCCATTCCTTC
Right flanking sequence: Indices 186795 -- 187294
GAGAGAGATAGATAGGAACTTTCAGATGCATGCTTCCCCATGTCCTTCCGCCGCTAAGAGAAATG
ATGGCGGAGAAGGGGCCATCCTCAGTTCAGTGACAGAATCAAGCACCTCCTTCGCTTCGCCTATT
GAAGCTTGGGTGGCTGCCTGCCATATGAGAAGTTATTACTTCCATCAGTGAGAGGAGAAGTTATT
ACTTCCATCAGTGAGAGGGTGAACTTTCAAATGGATCTGGAAACAGGCGCTACCATCGTTAGATT
GGGATCGGACCGGGCACTTCCATTCATTCTCGATCCGGGGAAGGGAGAAGGTTGAGTGCGGGGCG
CCTGGAGCAAAGGATGATTCTATTGGATCGATAGCTCTAGGTTCCAGGGAGATGCATTCAAGATA
TGGAACTCTTTAATGGCTCAGACCTCCTTCCCGAAACAGCACCACTTCGGGCGCCCTGGAACTCT
TGGTTGGTGCTAGGAAACAAGCAAGTAATGGAGAAGCATTGGATT
Found at i:186983 original size:28 final size:28
Alignment explanation
Indices: 186951--187007 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
186941 CCTGCCATAT
186951 GAGAAGTTATTACTTCCATCAGTGAGAG
1 GAGAAGTTATTACTTCCATCAGTGAGAG
186979 GAGAAGTTATTACTTCCATCAGTGAGAG
1 GAGAAGTTATTACTTCCATCAGTGAGAG
187007 G
1 G
187008 GTGAACTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (28 bp):
GAGAAGTTATTACTTCCATCAGTGAGAG
Left flanking sequence: Indices 186451 -- 186950
TGGAAGTGGAACAGGATAAAGAGATGCAGAGCATTGCCTTGGTTCCGATAGAGGTGGAATAGAGC
TTGGTTCAGGTCCTGGCACTCGATGATGATGAAAATGCAGGTGGCACGCCCTTGGTTCAGATGAA
TGAGATGGCATAGGGGCTCACCTTATCTCGTGAGTAGGTCCCCATCAGGGAAGCTGGGAAGAGAG
GAATAGAATGTGCATGGCTCGGATTGGCTTGCTTACTCGCCTTTCCTCCTTCTCCAGGGGTGGTC
CTTGAGAGATGAAGACGGAGAGACATCGCTTGAGTTGATTCCATTCCTTCCTCCAAGGCCTCTGA
CTCTCCAAGGCTCTGACTCGAGAGAGATAGATAGGAACTTTCAGATGCATGCTTCCCCATGTCCT
TCCGCCGCTAAGAGAAATGATGGCGGAGAAGGGGCCATCCTCAGTTCAGTGACAGAATCAAGCAC
CTCCTTCGCTTCGCCTATTGAAGCTTGGGTGGCTGCCTGCCATAT
Right flanking sequence: Indices 187008 -- 187507
GTGAACTTTCAAATGGATCTGGAAACAGGCGCTACCATCGTTAGATTGGGATCGGACCGGGCACT
TCCATTCATTCTCGATCCGGGGAAGGGAGAAGGTTGAGTGCGGGGCGCCTGGAGCAAAGGATGAT
TCTATTGGATCGATAGCTCTAGGTTCCAGGGAGATGCATTCAAGATATGGAACTCTTTAATGGCT
CAGACCTCCTTCCCGAAACAGCACCACTTCGGGCGCCCTGGAACTCTTGGTTGGTGCTAGGAAAC
AAGCAAGTAATGGAGAAGCATTGGATTCGGAATGTGATGAGTTTGCCTTCGCAGGAAGAGGATAA
CAGGGCCTAGAGCCCGGTCGGAGCCTAGAACCCGGTCGGAAAGGGAACAAGCTGATGGATCTGGA
TCAATGTATAGAGATGAAGATTCGTTCTTGGGTTAGGATCCTAGTAATAGAGTAGATGACTCCAT
CTTTCCATATGACGATGGGACTAATATTTATTCCGCCTGCCCAAT
Found at i:187360 original size:18 final size:18
Alignment explanation
Indices: 187337--187372 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
187327 GGATAACAGG
*
187337 GCCTAGAGCCCGGTCGGA
1 GCCTAGAACCCGGTCGGA
187355 GCCTAGAACCCGGTCGGA
1 GCCTAGAACCCGGTCGGA
187373 AAGGGAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.33, G:0.36, T:0.11
Consensus pattern (18 bp):
GCCTAGAACCCGGTCGGA
Left flanking sequence: Indices 186837 -- 187336
TCCTTCCGCCGCTAAGAGAAATGATGGCGGAGAAGGGGCCATCCTCAGTTCAGTGACAGAATCAA
GCACCTCCTTCGCTTCGCCTATTGAAGCTTGGGTGGCTGCCTGCCATATGAGAAGTTATTACTTC
CATCAGTGAGAGGAGAAGTTATTACTTCCATCAGTGAGAGGGTGAACTTTCAAATGGATCTGGAA
ACAGGCGCTACCATCGTTAGATTGGGATCGGACCGGGCACTTCCATTCATTCTCGATCCGGGGAA
GGGAGAAGGTTGAGTGCGGGGCGCCTGGAGCAAAGGATGATTCTATTGGATCGATAGCTCTAGGT
TCCAGGGAGATGCATTCAAGATATGGAACTCTTTAATGGCTCAGACCTCCTTCCCGAAACAGCAC
CACTTCGGGCGCCCTGGAACTCTTGGTTGGTGCTAGGAAACAAGCAAGTAATGGAGAAGCATTGG
ATTCGGAATGTGATGAGTTTGCCTTCGCAGGAAGAGGATAACAGG
Right flanking sequence: Indices 187373 -- 187872
AAGGGAACAAGCTGATGGATCTGGATCAATGTATAGAGATGAAGATTCGTTCTTGGGTTAGGATC
CTAGTAATAGAGTAGATGACTCCATCTTTCCATATGACGATGGGACTAATATTTATTCCGCCTGC
CCAATCTAGCAACTTATGTAGACAACCGAGGCAACAAAGACTATGATTTTCCTATTTAACAACCT
TAGGAAGGAACTCAAAGTTTCAAAATAAAATAAAGGATGACTTTGCTGTGTTCCCACTCCTTCAA
ATCTCCTATAAATATCTAAATAGATAGGGTGCATGTGGAATCACTAGAATAATTCTAAGCCTATG
CGGCTAACCCAATGTGTTTGATTGGGACGGTTAGCTTTCAACTCAATTCTGTTGCAGCGGCAGTA
GGAGTTGAAGAGATAACAAAAAATGTATGGCATTCAATATGCCTTCCGGGAACCCACCTTTGAAG
TTAAATTCCCAATGGTTTTTGGTCATATTCTATCGGTGGTAGAGC
Found at i:193130 original size:19 final size:19
Alignment explanation
Indices: 193106--193143 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
193096 AATAACTATT
193106 TATTATAGAAGAGTATGGC
1 TATTATAGAAGAGTATGGC
193125 TATTATAGAAGAGTATGGC
1 TATTATAGAAGAGTATGGC
193144 AATCTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (19 bp):
TATTATAGAAGAGTATGGC
Left flanking sequence: Indices 192606 -- 193105
GGCCTCTAGTGCAAGAAGGAATGCAGATGGGGCCTCAGTAAGCCCTTGACAGTACGTTCGCTTTC
TTCTCCCGTCGATTGAGGGCATTGGGTAAAAGGGGAATGGGTGATCGATGAAAGAAATCTACTCC
CCTTAAATGAATCCCGCTGATAGCGGTCAGGTCTTATGGCTGTCGGGCAATCGCTCCTAGGCCGT
TGAGCATGCCGGTAGTCAATTAAGAGTTCGGAACGACACTAACACACCGGAAAGTTAGCCGTACC
GGCTCTTCCCAGCTTCCTAGCTTAGTTGGTAGCTGACCTAACCTACGCTCATCTCACTCCGGCCT
TGCTTCTTAGCGCTCCCTGGAATGAAATAGTCTGCTTTGATAGAACCAGGGACGCGGGAACAGAC
TTTGATATTCTACGATCTGATCTCGTCTATTTAAAATCGTCTTAAATCGGAGTTCTCCCGAACAG
CTCCTAGTCTTAGTTAGCTCTCCTAGCTGCACTAGAATAACTATT
Right flanking sequence: Indices 193144 -- 193643
AATCTTCTTTGCACGAGCATTGAAATAAAGAGTAAGCAAGTAAACTACTATAGAAGAGTATGGGT
GGGTGATATATTGACTGAGGTTTTTCCTACCTCCCCTAGCGGGGAGATTCCAAGCCAAGTAAGGC
ATTCTCCCCGGGGTCACTCCCTTTGAGCTAACAGCGGGGATATGCCGACAACAGCTGAAATAGCT
GCGCTTAGGCCTAATCCCAATGCCCTTACTCAAGGACCAATAACCGGAAAAGAGAAGAGCGGAGG
CGTAAACAAAAGCGCATTTCCTTCCTTCCTTTTGGACAGCTTTCCTGGGCTAGATATTCCTTGCT
TCCATCCCTTAAAGGAGTCTTTGAGGGCAATGTCGGGCTAAGGCTTACTTTTAATGTGAAGGTGT
CGGCATTGCGCAGTAGGTTTTGACTTGGATCTTCGAGCCGCTATGCATGCCTTTTGCTTTTAGCT
GCATTAATATGGTCAATCACTACCTGCCTTCCCTTTACTATTGAT
Found at i:195628 original size:17 final size:17
Alignment explanation
Indices: 195606--195644 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
195596 TTCAATCAAC
* *
195606 GAATAGGTTGTATAGTA
1 GAATAGGTTGTACAGGA
195623 GAATAGGTTGTACAGGA
1 GAATAGGTTGTACAGGA
195640 GAATA
1 GAATA
195645 CAATACGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.03, G:0.31, T:0.28
Consensus pattern (17 bp):
GAATAGGTTGTACAGGA
Left flanking sequence: Indices 195106 -- 195605
ACTGCCAAAGACAATCACTAGGAAAGAAACTCCTGGAGAGGTCTCCGAACTCCCCTCACGGATCA
GAACCGGAAAGCAAAGCTGACACGTCCCGCGCTGCCTGCCCAAGAACTAGGATCAGCTCCTTTAG
GCTACTTTAGCTACCCGGAACTATATATAGAATAGATAGCCCGAAAGCATGGAGCTTCTTGTCCC
ATTTTATGAATCGAGATTGAAAAGTGTTTCGAATAAACGTCACAAAAACACGGGTTTACGCGACG
TAAACCAGCTAAATCGACCTGAAAATGCTATTCCCTGATCGGAGAATGAATTGCTTGCGAGTCCT
TGTGGTGAAGACTGATCAGCGCTAAGCTAACTCAAGAAGAAGAATTCCATGACAGATAGAAAGAC
CGGGCTTCGCTATAGCCTATCGGGCTAGAACCCTATCGAAGAAGTGGTATCGAATACGTTCCACT
TGAGTATACGTTGCTCAAACACGAGAATCAGTGGTTTCAATCAAC
Right flanking sequence: Indices 195645 -- 196144
CAATACGTTGGTCTCATTCCATCCATATAGCTAGAACGAATCAATGGCTACACATGCGATTTGCT
TGCTATAAAAGAGAATAAGTGGCTACCACCAGAGACAAAAGCGGAGGCGGCTCACTCGAATCTAT
CCAGTTTAGGTAATTCGACTTCAAAGCCAAGTGCTTCTCGCAGCCTGCCGCACCTGTATTCATAG
AATGAAACGCCTCGAATGCAGCAATAGCGTTATCTGTGATAAGACGCCCACTTACAAAGGCACTT
TGAGACTGTGAGATAACACTACTCATTAAAGGTTTAAGACGATTCACAATGGAATTAGCTTATAA
ACCGAGTTGAAATTAGCTTATAAACCGAGTTACATAAGCTAATTGGGCGGAAATCAGCCATCCTA
CTCGGGCATTTGATCTTAGGAATCAACACAATCAGAGTGTTATTCAAAGCTGAGAAATCCATACC
TTATACCTTACGTTAGATCGATACACTTCGGAAGCTTTCCCTTTG
Found at i:195987 original size:23 final size:23
Alignment explanation
Indices: 195957--196000 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
195947 TTCACAATGG
195957 AATTAGCTTATAAACCGAGTTGA
1 AATTAGCTTATAAACCGAGTTGA
195980 AATTAGCTTATAAACCGAGTT
1 AATTAGCTTATAAACCGAGTT
196001 ACATAAGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (23 bp):
AATTAGCTTATAAACCGAGTTGA
Left flanking sequence: Indices 195457 -- 195956
CTAACTCAAGAAGAAGAATTCCATGACAGATAGAAAGACCGGGCTTCGCTATAGCCTATCGGGCT
AGAACCCTATCGAAGAAGTGGTATCGAATACGTTCCACTTGAGTATACGTTGCTCAAACACGAGA
ATCAGTGGTTTCAATCAACGAATAGGTTGTATAGTAGAATAGGTTGTACAGGAGAATACAATACG
TTGGTCTCATTCCATCCATATAGCTAGAACGAATCAATGGCTACACATGCGATTTGCTTGCTATA
AAAGAGAATAAGTGGCTACCACCAGAGACAAAAGCGGAGGCGGCTCACTCGAATCTATCCAGTTT
AGGTAATTCGACTTCAAAGCCAAGTGCTTCTCGCAGCCTGCCGCACCTGTATTCATAGAATGAAA
CGCCTCGAATGCAGCAATAGCGTTATCTGTGATAAGACGCCCACTTACAAAGGCACTTTGAGACT
GTGAGATAACACTACTCATTAAAGGTTTAAGACGATTCACAATGG
Right flanking sequence: Indices 196001 -- 196500
ACATAAGCTAATTGGGCGGAAATCAGCCATCCTACTCGGGCATTTGATCTTAGGAATCAACACAA
TCAGAGTGTTATTCAAAGCTGAGAAATCCATACCTTATACCTTACGTTAGATCGATACACTTCGG
AAGCTTTCCCTTTGGGAAACCTACCTTCGTTCCTCTTGCCCTACCGATCTATGCTACCTCGTATG
GTACTGTCTTTCTCGATGCGTGCTTTTCTACAGGGAGCATCCCAACCAGCAGCTTAAGAAGGAAT
TCCGGTGCCAATTTCATACCATAAAAACCATAAATAGTGCCTCCCACCTTCCGGTCTACTGGTTA
TAGATCAATGGCTGAGAACTCGTCTTAACCGTACTGTATTGGCTATTCTGGAATCTAACTATTCA
ATTTCCTGGGATTCCCGTAATGCGTTTTCTTGCTAGCGCGAAAGCCGTAAGGCTAACGCCCTTTA
TTGCCGTAATGCGTTTTCTTGCTGACGCGCGAAAGCCGCCCGGGA
Found at i:221201 original size:4 final size:4
Alignment explanation
Indices: 221194--221231 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
221184 GGGGGGCTGG
221194 GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GG
1 GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GGAA GG
221232 CCGACGATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (4 bp):
GGAA
Left flanking sequence: Indices 220694 -- 221193
TAGACTGGCAGTCTCCGAGTTGTTTTTGGGCGGGATGGTAGAGTTTTTCTTCGCCACTAGTGGCA
ACGAAGTTCTTGGTAATTTGCAAGGGGGAAGGAAGATCTCCACTCACTCATTCATTCAGTGCCTG
CGGTGAGGCGCGACCCACAACAAACGAAGGGGGAAAGCTTGCTTGCTGTAGCCCTATTTTAGTAG
ACTAGGGTAAGCGCTATTTAAGTAGGCTCGCTTCTAATCTAAGTAGGCTCGAGAAGGGTAGGCTC
GCTGCTTCGCTCAGCAGAAGAGTACGCTAGCTAGCTAGCTCAGTGTCAGTAGAAGGGAAGAAAAC
AAACATGGTCACTCCTTTTAGGAACATGGCTCGTTCAGTCACTTCACTCGCTGCTCGCTGGCTCG
TTCATTCACTTGCTCATGAACTCGCTTCGCTGCTTCGCCAGAAGCGACTAGTCGCCTCCTTTCCT
CCGCCGAAAGATGCTTAGCCAGAAGCGACGAAGGGGGGGGGCTGG
Right flanking sequence: Indices 221232 -- 221731
CCGACGATTACATGAGGGGGAAGCTGTCGTAGAAGCTTTGCCCCTTGCTTTACAGAGATTGTTAT
GAACTGACTAAATGACTATATTCTCCCGGAACGCTAGCTAAGCTAATAGTATTAGTTCCCTTCAA
TAAAATCAATAAGAAAGAACGAACGCCGCCTCCTTCTTAGAACCCATTGAGGGGGGCCTCGGGCC
CGGGAAGGGGAGAGTGGCCGAGTGGTCAAAAGCGACAGACTGTAAATCTGTTGAAGTTTTTCTAC
GTAGGTTCGAATCCTGCCTCTCCCACTTGTTGTAGACTTAAGAGAAGAGAAAGGAGGCATTCGTC
AGCGTAGGAAGGCCAACCGAGCGAAGCTCTTTTTTTTGCCGTGCCGTGAAGTGAAATTGTATCGT
ATGTTAGTTAGAGAGATTGGCGAACTACTACGATCTATAGATTCCCCATCTATATCCAATCCCAA
CGAGAATAGAAGCGACTCGCTTCCGGCTGGCTTGGCTTGTAGTCG
Found at i:223893 original size:2 final size:2
Alignment explanation
Indices: 223888--223949 Score: 56
Period size: 2 Copynumber: 32.0 Consensus size: 2
223878 TTTAGAGAGA
* *
223888 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT CT AT TT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
223928 CT TT AT TT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
223950 CGTTCATCTA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.55
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 223388 -- 223887
AACGCCTTACGGCTTTCGCGCTCAGCAAGAAAACGGATGCGCGTTGCTAACGCCTTACGGCTGGC
TTTCGCGCTAGCGCGCTCGTCCGTTGCTTGTTTGCTTGTTGGGTTTGCGACTGAAGGAAGTAGGG
CTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTTTAGAATGAAAGTCGCTATGAAGCCCCTAC
GACTTTGTTTGATTCAAAAGGCGAACAGCCCCCCTTATAGTCGTCTGGGGTGGGGTGCTTGTGGT
AAGCTGCCTTGGATATGAGGAAAATTCCTAAAAAAAAAAAGGATAAGTAAGGTATTTGACGAAGA
TCTTTCTATCAATAGATAGGAATGAGTGTTCGATATAGGGGATAGGATCCATCTGCTCTTTCTCT
CTCCATTTTTTTAGAGAGAGAGAGCAGATATAACGATAAAAAAATATAAAATAAAGGATACATAG
ACATCTAAAGGGATGTCTATTCTATTCCTCTTTATTTTAGAGAGA
Right flanking sequence: Indices 223950 -- 224449
CGTTCATCTATGTCTATCTATCCATTGATTCTATCTATGAATGAAGTAAAAAGAGTTCGGGTTCC
CCGAAGCCCCGAATGGATTGGATCGTTTCTGCCAACGAAATGAACGCGGAGCCCGTTCCGAATGC
TTCTCCGATCCGGAAGTTCTAGCGAAGAGAATAAGATGCTGCTCCCCCTCCATCTGTCTTTTCCC
GCTTTGCTAATCTTCCCCTCTAACGCGGGCCGGGCGGCGGCGGGCGCGGGAGGAAGAGAAGACGC
TCTTATCTTAGGTCCTTTTTTTCAGTGCAACACAGGAAAGCGCCCTCTTTTTGTCATCCCTGCTG
CTTTCCAGAGGCTGATTTTTGGGTATTGAACGCATGGCGTAGCTAGGACCCTTCAAATAATGTTT
GAGCCTATGTTCAAACCAAACCCACCCCATAGCGAAAGAATGCCCGCCAAGTTCAGATAAGGGAA
TGCTTCCCCCAACCACTAAAGGAAAGGCTCGACGAAGGGAGGGAG
Found at i:230067 original size:5 final size:5
Alignment explanation
Indices: 230057--230103 Score: 94
Period size: 5 Copynumber: 9.4 Consensus size: 5
230047 TCAAGACGTC
230057 GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GC
1 GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GCCAA GC
230104 ATCTTGAAGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.38, C:0.40, G:0.21, T:0.00
Consensus pattern (5 bp):
GCCAA
Left flanking sequence: Indices 229557 -- 230056
CATCCCCACTAAATCAAGAGCAGTTCAGATGCCCGAAAGAAGTCATAATGTTGGAAGAAGTGGAT
GATCTCTTGAAGAAGGGCCTAATTAGGCCAAGTAAGAGTCCATGGTCCAGCGCTGCAAAATACGT
CAATAACTTAAATGAGCAAGAAAGGAGAATGCCAAGGTTAGTGATCAACTATAAACCCCTTTCAG
AGGCCCTCCAGTGGATTAGGTATCCCGTACCTAATCGACAAACACTTTTTCTAAGAAGAGATGGA
GCAATAATATTGAGCAAGTTCGACCTTAAATCAGGATTTTGGCAAGTTCGAATCGCTGAGAAAGA
TCGATACAAGACGGCATTCTCGGTCCCAATGGGGCAGTATGAATGGTGCGTCATGCCATTCGGGT
TGAAGAATGCCCCGTCAGAATTTCAACGCATCATGGATCAGATCATCCGGCCGTTTGACTCCTTT
GCAATAGCCTATATCGATGACGTCTTTACTAAAGATCAAGACGTC
Right flanking sequence: Indices 230104 -- 230603
ATCTTGAAGCCTTCAGGAAAGCAATTGAGAGATACGGCATGGCCCTGTCCGCAAAAAAGATGAAG
CTCTTCCAAGAAGAAGTTTAGTTTCTTGGCCAACAAATCAAATTAAGGATGGTCAAATCCAAGTC
CATGATCATTCTATCGAATTCGCCAGAACTTTCCCTGACAAGATTACCGAAATAAATCCACTTCA
AATCTTTCTTTTTTGCTTCCATTTTATCTTTGATTATTATAAAGACCTTGCTGCGGATAGAAAAA
TCCTGTCCAATCGCCTGAGAAAGAATGCTCCGAAGCAATGGACAGAAGTGCATACAAAGGCGGTC
CAGATTGATGACCATGTCTAAGGACGGTTGGGATCTTGGGATCATGAGATGGGTCATATTTAGCT
TGGGTGATCTCCTTGGTAGGACCCACCCTCCATGTTGTGATGTATGTACGACACAGGTAGGTTGA
TAGGATTAGGAGGTGGCCGGACGTGCGGGCGTCCTGATTTCGAAC
Found at i:245246 original size:24 final size:24
Alignment explanation
Indices: 245214--245263 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
245204 AGTAGGCTAC
*
245214 AGTGGAATCAGTTGATCGAGGTGA
1 AGTGGAATCAGTAGATCGAGGTGA
*
245238 AGTGGAATCAGTAGATCGAGTTGA
1 AGTGGAATCAGTAGATCGAGGTGA
245262 AG
1 AG
245264 CAGCTGTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.08, G:0.36, T:0.24
Consensus pattern (24 bp):
AGTGGAATCAGTAGATCGAGGTGA
Left flanking sequence: Indices 244714 -- 245213
AAGGTCCTCTTCTACGGCTCAAGGTTCAAGCTAAATCAAGTTCCTTTTCTCCTGATACTCAAAGT
AAAATCAATGCTTTAAGGAAAGACTTCCCAGCGCAGTCAAGCAAGATAGGATTCTCCCAGATCTG
CCCCTTTCGATACCCGCTCTCATAAATCACATAGATAGAGATCCCAACTACGGATATATAAGGGC
AAGAACCCGAAAGCGAAGTCGAAGTGAAAAGACCTAGTTCGAGCAGATCGAGTTGTTTCATATCC
TTTTTGCCCGGGTGAGCAGTTTACATGATCTTTCGGCACCTGTTCCCTTTTCTATTACACGATTT
TTCGGCACCGTTGCGCTAACTAACTCCAGTTTTCTTGCTGGAGCGAATGCAAACGTAGGCCCACA
AACGTAGGTTCTGAAAGAAATAGACTACGGCCCAGCAAACTCCGGAACTGACGTAACTACACTAT
ATAGAAAGTGAGAGCTCCTGCTTTGCGCTCCTAAAAGTAGGCTAC
Right flanking sequence: Indices 245264 -- 245763
CAGCTGTGGTGGACTCTGTTGCAGATGAAACTCTATCTTTAGCCGAATGTTCAGGTGGTGAAGTT
GAATACGTTGATCGAGGTTACTTTGTTGAATCCGTGGAGTCTGGGCCAGAGACTTCCGTTTCTAG
TTCCGTGTCGGAAGGGCCTCCATTTGCGTAGTCTCGCGCAAGGCAGGCGAAACCAGATATGGTTG
TAGATTCAAGAGCGAAGGAAGCAACTGTAGCCTACGGTTAAAGGAAGCCGTCAGGGAATTTCTCA
TACGCCGTAGTGTGGCTACTAGTTCCCGCAGGTATTGGTGTCTGGGAGAATCTCTCTTACTGGGC
TGGTTCGTCTGGGAATAAGCTAACCCCTACCAAGCAAACTCCGGCTTCAGCGCCTTAACGCAAGT
AGTGTAGTCAGATAGTCCTGAGGTAGCCACAGGTTACCGACCTTAACAATTACATTTCCTCAGTT
GGGGATGAAACTCGATCTTATGATTCAACTCGGTTTACGCTTTTT
Found at i:267619 original size:41 final size:42
Alignment explanation
Indices: 267549--267632 Score: 118
Period size: 41 Copynumber: 2.0 Consensus size: 42
267539 AAGGAACTGG
*
267549 CTTAGCTGTTCTACAAAGGGGAAAAGCTAAGGTTACAGAGTCA
1 CTTAGCCGTTCTACAAAGGGGAAAAGCTAAGG-TACAGAGTCA
* *
267592 CTTAGCCG-TCTACAAA-GGGAAAGGCTAAGGTACGGAGTCA
1 CTTAGCCGTTCTACAAAGGGGAAAAGCTAAGGTACAGAGTCA
267632 C
1 C
267633 GTCAGCTGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 10 0.26
41 13 0.34
42 8 0.21
43 7 0.18
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.20
Consensus pattern (42 bp):
CTTAGCCGTTCTACAAAGGGGAAAAGCTAAGGTACAGAGTCA
Left flanking sequence: Indices 267049 -- 267548
ACAGTTGTTGTACTATTAAATATTAAGTAGCTGTACAACAGAATGCCGTTCGCCTTTACTTGAGT
ATTGAGTAGTACTTAAGTAGCTAAGTTTCCAAAGGTGAGCAGCCCCCTGTCCTTTATAGTCATAA
AGGGCTTCTCAGAAAAGTCAGGAAGGAGGCATTCGAAAGGCCGACCACTATATAATAGGCATTCT
GGGGAATGCCGACTACAAGACTACGACCAAGGAGGCATTCTGGTGGTAAGGCCGACGACTACACG
GAGAGATCTCTATACCAAGTCATGAGCGATAGCGAAGCCAAGCCGCCGCCTATAGGCGAAGGGAC
GAAAGCCCGGCGAAGGTTAGACCTGAGAAAGTACGAAAATAAGTACGTTAAGGTTACGAAGTCAC
TTAGCCGAGCCGAGGCGAAGGTTATGGAATAACTTAGTCGAAGAAAGTGAGATTTTTGTTATGAA
ATAGCTTAGTTGAAGGTAAGTGAAAGAGTTCCACTAAGGAACTGG
Right flanking sequence: Indices 267633 -- 268132
GTCAGCTGTGGATATAGACTAGGCTAAGGAACGGAGTCTTAAACTATGGACCGAGACTACACTAA
GGCACAAGGAAGCGAAAGCTAATGAGCAAGGAACGAAGCTGCTTCTCTAATAGCCCCGTTGAATA
GGAGGGCGAAGGCTTTTTGAAAAAGTGTTTTTTTATTGTTATTGTAAATGCATTTTTTTAGAATC
TATTTAGAGAGAGGAGGGGGCTTCAAGTTCTTAGGAAGAGCCGTACGAGGCAGCTCACGTACGGT
TCGGGAGCCGAGCCCCAGCACAGGGGCTTAGGTCAACACTTATATAATAGCCAGTCATCAATTGG
AAGCGGGCAAGATGGTGATTAATTGCGATTGGTCCAAACCTTCGACCAGCGGCTTCTTGCGACCT
GCCCAGAATGCCCATACATACCAAGACCTTGTTCACACAGCGAATAAAGGCCGGGTGGAAGGGGG
CAGTCAGCTGGCTGCTTCTTGGCCACGCCCCCCTGCTTATAGATA
Found at i:290483 original size:31 final size:31
Alignment explanation
Indices: 290447--290529 Score: 132
Period size: 32 Copynumber: 2.7 Consensus size: 31
290437 CCTTTCGGCG
*
290447 AAATATTGGCCTTTACCTCCCCCCCTATCGC
1 AAATATTAGCCTTTACCTCCCCCCCTATCGC
*
290478 AAATATTAGCCTTTACCCCCCCCCCCTATCGC
1 AAATATTAGCCTTTA-CCTCCCCCCCTATCGC
290510 AAATATTAGCCTTT-CCTCCC
1 AAATATTAGCCTTTACCTCCC
290530 TTTATTCGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
30 5 0.10
31 14 0.29
32 29 0.60
ACGTcount: A:0.22, C:0.42, G:0.07, T:0.29
Consensus pattern (31 bp):
AAATATTAGCCTTTACCTCCCCCCCTATCGC
Left flanking sequence: Indices 289947 -- 290446
AAGTGCAGATGATAGAAGAACGAACAAAGGATTCAGGCACGACTCCAATGCTTGACGGATAGAAG
CAATCTTCCCCACTCGGGACTGGACGACTTGAGCACTGAATCCTATTCATATAAGAGATTTTCCT
TCTTCCTACAGTACTGGATCGTGATCCAATCCGGTTATTGGCATGGCAAGTATAAAATTCCGTTT
ATAGAAGAAGCTGCTAATCTTTCTCCTTCGACTGAGAAAGTTTCTCTTTCGGCTGAGCCTTTGGT
CGAGTCCCTATTCTATAGGATATAGTTTCAAGAGCCCTTGCTATATAGACACTTTGTTGCAAACA
ATCCCATCTGTCTATTAGTGATAGCTCCATCCTAAACTTCGATTGAATGGAGTCCTTCTGAACTG
GAATCATGAATTGGATTCGAACCAATATCTCTGTGCGACTTTCCCTTTAGTCGATCATGATGGGA
AGATCCCGCTGCCCAGGATCTCGGCATCCCTCCCACCTTTCGGCG
Right flanking sequence: Indices 290530 -- 291029
TTTATTCGTCGGTAAAGCCACGGGTAAAGTCACGAAAGGCCGCTAAAAAAGCCTTAAGAACACGT
GAATTGGGATTGGCGAAGGCCCGGAGCTTTCTCCGGAATTTTGGGATCGACCACCCGTCAAAAAA
AAGGGACGATACCCGCCCCACATCTTCTGGATCATCGACTGGGACCCCGTTCTCAGCCAGGCTAT
CCCGGGCTTGATTTTCGAACGCCTGTTCAAGAGACACTCGGGTCTCTATACTTCTTTGCTCCCAA
CGAGTCAAGGGAGGGTAAAATGGGGGAACTTGACCCGCAGGCGGAGCGTTTTCCTGCGGAGCCGC
GGGACCTTGATCCTGCTGCCCACGTTCCAGTTCCACCCAGAGGTTCTCCTGGTCCACCGAGGACA
CCGGCGAAGGTGGCATTGAAGGGCGAATATCCGCGGGAACGACGCTAGTGGAACAGGGGTCCACT
TGGGCAGCTCTTTGGGACGGCCCCGGGTTGGAAGGGCTCTCGGGA
Found at i:293400 original size:20 final size:20
Alignment explanation
Indices: 293372--293409 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
293362 AGCGATAGCG
*
293372 AAGCCAACAAGCAACGGAAC
1 AAGCAAACAAGCAACGGAAC
293392 AAGCAAACAAGCAACGGA
1 AAGCAAACAAGCAACGGA
293410 CGAGCGCGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.26, G:0.21, T:0.00
Consensus pattern (20 bp):
AAGCAAACAAGCAACGGAAC
Left flanking sequence: Indices 292872 -- 293371
AAATGGGAAGATCTAGGATAGGCGGCCAACCTCCTGGAGAGAGCGATGTGCATGGACCAGGTGAG
TAGGGATGCAGCTCCGTGGACCGCTCGTCGGGCCTGATAGGTGGTGGTATCACACCCTTCTCAAA
GGAACCGTACGTGACACTCTCGCGTCATACGGCTCCGTCCCGGAATCAGGACCTCCCCTTTCCTT
TGACCAACGGGTCCTCGAACCAACCTGTCCTTGCATGGAGGTTCCTTTTCATTCATTCATTGATT
GATTCAAGGTAGCTTTAGCTTGCTTCCAAGTCCAAGCGCTAGCGGTAGAAGCTAGTCGCCAGAAG
CGAACTGGAGGGCCGGGAAGGAGGCCTTTTTTCTGGCGCGGAAGCTACCGCACGCAACTAAAATA
AAATGAATGAAGGAAGGAAAAGGAAGAAGGCATTAGCATTAGAAAGACTACAGAGGCATTACGGG
CCGACTACAAGACTACGACTACAAAACAAGTCATGAGCGATAGCG
Right flanking sequence: Indices 293410 -- 293909
CGAGCGCGCTAGCGCGAAAGCCAGCCGTAAGGCGTTAGCAACGCGCATCCGTTTTCTTGCTGAGC
GCGAAAGCCGTTGCGCTAACGCGCAGCTTCTTGCTGGAGCCTTTTTTTGTTTATGTCGAAAGCCC
CACAACTAGCTATCTTATAGCAGACAACTAACGCAAGCCTACTCAACTAATCTCATAAGTAAACG
CCTGTTCGCATCGCAACTAATAGAAAAAAAAACTACTAGACTAGACTAGACTAGTAGTTGAGTGC
TCCTTGTTGTTCGGATCTTGACCGGGTCCGAGCTTCCCAAGCTCTATGCTGTTGGGGAACTCCGC
AAGGGTCTTACCACCTTCTTGATTGACTATATTTGAGTCTTTGGGGTACTTGGGGATTATATTCC
GCGCCGAGGATTTGTGCTTGTGGGCTGGGGTGAATATAGCAGACCAGCGGATCTGGTGGTCGACA
ATCGTTCGGACTTGGTAAAGGTTGTCGCGGCACCTGTAGTAGGAC
Found at i:302674 original size:24 final size:24
Alignment explanation
Indices: 302642--302693 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
302632 ACTCGATCAA
302642 TTTCCTGGGATTCCCGTAAGGCGT
1 TTTCCTGGGATTCCCGTAAGGCGT
*
302666 TTTCCTGGGATTCCCGTAATGCGT
1 TTTCCTGGGATTCCCGTAAGGCGT
302690 TTTC
1 TTTC
302694 TTGCTTCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (24 bp):
TTTCCTGGGATTCCCGTAAGGCGT
Left flanking sequence: Indices 302142 -- 302641
TTAGGTGTGTGGAAGATTGGAACAGAGTTGGGCAACTGAAGCTGTTCTGGCGATTCGTGAACAGC
AAAGACTCCCTGTGGGCTGATTGGGTCACGAGTCAGTATCTAAAAAGAGGCACTATTTGGGATGT
GGATATATCGGCTGACTGCTCGTGGTCTTGGTGTTGCATACTCTATCAGAGGTAAGTTGCCTGCA
CGGTGATAAGGTATCAAGTTGGTGATGGTACTTCTATTGGATTTTGGTCATTCCCCTGGTTAGAT
AATGGACCTATAGCTGACCAACAAGCAACGGAACAAGCAAACAAGCAACGGACGAGCGCGCTAGC
GCGAAAGCCAGCCGTAAGGCGTTAGCAACGCGCATCCGTTTTCTTGCTGCGCTTGCGCTTGTTTG
TAGAGTGATATACTATATAAGCCCTTGATTCCCGTAAGGCGTTAAAACTATTAGTTAGTAACTAA
TAGTTGTTTGTTGAAAAATCAAGTGTGCTAACGCAACTCGATCAA
Right flanking sequence: Indices 302694 -- 303193
TTGCTTCTTCGGCCCTTGTTTGATCCTTCATCACCCCAGATTTATCCGTTATACCTCGGGCGGGG
TACCAGTCGAGACATTCCTCTTTTGACGTCCGTGCACCGGTTGTTAATGCTCCCGATGATTGGCC
TTGCACCAGCCTGAATTTGGTTTATGAGGCGGATAATCCCTATCTTCTGCTATCAATTCCCCCCG
TCCAATCAATAGGTTGAATCCCAGAGTCTTAAAAAGCCATACCTCCCTACGGGCATAGAAGTTCT
ATATCTGGGCATATCAGTTCTATTCATTCCCCCCCCCTATCATCCCAGATTTCCCTCCTATATTT
CCTTCGATCGTCGGACGTTAAGGTCTGCTGCCACCGAAATCATCCTCCCTTCATCCGCTGGCATT
CCTTGTTTGAGGCATATCGATTATAGAAGACATATGGGTTGTTGTAATCCCCATGGAGTGGAGTC
CATTATTGTACCTCAACCTCGGGGGAGGGAGAGAAAGCACCCTCA
Found at i:303995 original size:13 final size:13
Alignment explanation
Indices: 303966--304004 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
303956 ACTGAGCATT
*
303966 GCATTTATGCTGGA
1 GCATTTATG-GGGA
303980 GCATTTATGGGGA
1 GCATTTATGGGGA
303993 GCATTTATGGGG
1 GCATTTATGGGG
304005 CTGGTATCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.21, C:0.10, G:0.36, T:0.33
Consensus pattern (13 bp):
GCATTTATGGGGA
Left flanking sequence: Indices 303466 -- 303965
AATCTTATAATGCTCCAGATCACTCTATCAATCCATTCCAGTCCCACCTTCATTCGTGTGCTGCA
ACTCATCAGCTATAGCCTGTGGCTAGGAGTTATCCCTTCAAGCGGATATTCGAGAAATACAGCTG
GCCGCAGCACCTCTCGTAGTTGGAGAAGGAGATAGGTGTCCACCTATTCGATCATATGCAATACC
TTTTTTGGAGAGATCCCCTCCTTTCGTTGGACAGACAGAATTTCCTGGTAATTTGCCCTCCTTTG
CAGATATATTGAAATATCAGATGGACACTCCCAATCATGCTCTATGAATTGAATACCTCCTGGGC
AAGCAGCACCAGAACGAAGGTTATCTGCCTTGCCTCGAGGGGCGGCTCATCCATCACAAATAAGA
AATTCCCTTCACCCGGATCAAATATGATCGGAGTTAGAGACTTATAATTCCTGCGTCTAGTTCAA
CCGGTGAAGGCAATCTTGGGAAATAACCGATATGTACTGAGCATT
Right flanking sequence: Indices 304005 -- 304504
CTGGTATCACTCCAGTTTCTTGTCGATAAGTCAACTCCTCCGGTCGAAATGAGCTACCATCTGAA
GAAGCCTATTTGAAAATGGGTCGCCCTTGTCGAGGTATATGGGTTGATAACCATTTCATTTGCCC
GGTGCAGTCGAGTGCTAAAGCCCGCGGGCGGGTTCATTGCTCGATCAAGATGGAAAAGAGTGGTT
GGAACTGAGACCTCTGGGTCCAGGCAATCATAGGAGTCTTCCCCCTCTAGCCAAATCTCCTATGT
TGTAACTGAGACCTTCTTTCTCTTTCGGGTATGCAACTCATTAATCCCTCCCATCCTTGTTTGGT
AGGTGTCCCACTGCCCAGAAGAGGAAAAAGTGAAATGAAGAGGCTAAGGGTGTTGATTGATTTCC
CGCTATTCTTCGACTTGAGCCTTGAATACCTGGGGAAACATACCTAATCTCATAAGAACCCCCCA
CTAATCTTCTCATCGGCACCAGATATTGGAGGTAGCATTTCAGTG
Found at i:339691 original size:15 final size:16
Alignment explanation
Indices: 339671--339703 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
339661 GAATGGAAAA
339671 ACTGGATA-GAAGAAG
1 ACTGGATATGAAGAAG
*
339686 ACTGGATATGAAGTAG
1 ACTGGATATGAAGAAG
339702 AC
1 AC
339704 AAATTGGACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (16 bp):
ACTGGATATGAAGAAG
Left flanking sequence: Indices 339171 -- 339670
CTTAATTAACTTAATTAATAACGGAACAAATGGAAACTATTACCCACTATATATGAAGCAACTCG
AGGATTTGCATTTATTTTTTTATCCGGGAACCGAGTCGAAGTTCTTTAAAAAGAGCTTATGGCAA
AGGGAAAGACATCAACCTATTAATGAAAGTGAAAGGATCTGATCTAATTCGTATTCCGATCCATT
GGACTTTTAGCAGATTCAGATATAGGTGGGGGAAAGGGACGTCCAGCTCTTTTTGGCGAGGAATC
GGTGTAGGGCGTGGGACTCGAACAAACCCTAACCCTAGCCGATCTACTTCCCAGCCAAACCCTAA
CCCGGACTCGGACTCGGTCAACTGGATCGACTGCTGCCGACCGGATCCACTGCTAAAACAACTGG
CTAAGATCCATTAGGACCGTTTATGTCTGAGTTGCATAAGAAAATCATGGTCCGTTATCCCCATA
TAACCATCTCTTGCTTCTCCGACTTGGGCTGCAGCGAATGGAAAA
Right flanking sequence: Indices 339704 -- 340203
AAATTGGACGCCATAGGAATTAGGGAAGCCGTCCTTGCATCCATTTTTACCATCCAGCAAGACAA
AGAATTTTGAACTTCATTAATCCGTGTGGAGAGAGCAAGTCGTTCTTGATGGACTAGGGAGAAGA
GATTTCCTATCTCATCGAAGATAGAGTAGTACTGGGTAAACTGCCGGCCACTGGTACTTTCATGA
AATCGGCTCTTTCCAAAGAAAGAGATAAAAAGCATTCACTCTGCCCTTGGTGAACAACTGTCCAA
AGGGCGGCAGAGGCTGGTCTGTACCTTAAGTATTTCCGTTAATAAAAAAAAAGAAGGATCCTATC
CTGGTTGGCTAAACATTGTTTATTGCACCCCTTCACCCCTCAGCCAACTCCCTTGTTCGAAATCG
CTGTCCGCTTGCTATCTGGAGAAGGAATTGCTCTTACTGTCATGGTGACAGCGAACATCTATGCG
GAGCTGGATTTGATTAATGAGACCGTTTATTCGAGCCAAGGCAAT
Found at i:350529 original size:33 final size:33
Alignment explanation
Indices: 350487--350556 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
350477 TGATCAGGTG
350487 TGATCAGGCTAATCAGACGAGAGCTCTCTCGTC
1 TGATCAGGCTAATCAGACGAGAGCTCTCTCGTC
350520 TGATCAGGCTAATCAGACGAGAGCTCTCTCGTC
1 TGATCAGGCTAATCAGACGAGAGCTCTCTCGTC
350553 TGAT
1 TGAT
350557 TGGCATGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (33 bp):
TGATCAGGCTAATCAGACGAGAGCTCTCTCGTC
Left flanking sequence: Indices 349987 -- 350486
CCCTTTATGCTACTCTTTCTGGGCTAGACCAAATGGCGAGGTTTCGTATCTTGTAGAGGGCCTTT
GCCCTGGCCTTTCACTGCTTGAAGCATTGGAATCGGGTACAGGCCCAGATGGTGCTACGAAGAGA
GATGCTCCAGAATGACAGGATTGGGTGCTCCTAGAATAGAGAAGGATCGATGCAATCGAGTTGGC
TGTAGACAAGGATCAATGATTATTATATAGAATTAGTTGGAATCGGACCATAGACTTAGCAGACA
ACCTGCCTTCTGTGGTGAACCAGAAAAAAGCCCTTGTGCTTTGTATTTGGTGAATCTTAATAGGC
CCTACTAAGCCCCCGGATTTAAAAGTGAAGCCCTACCCTATAGTTGAGTATCTTTTCCCTATCTA
AGCTATATCAACATAGCCAACTATCAAACTCATCCGCTTGTAAATGATTGGTGTAATACGTAATA
CTTACTCGTAAATGATTGGTGTCATAATTTTTAACTGATCAGGTG
Right flanking sequence: Indices 350557 -- 351056
TGGCATGATTGAGCCTAGCCTTTAGTTCACTTGCAAGAAAGAGTGCCCCTATTTAACGTCCTTCC
TGACTTTCTTTCTTCGATGCGAAGAATAGCCTAGTAAAGTAAAGTAGCCATATTCACTCACAAGG
AAAGGAAGAACGTTAAATCATTCCTTTGGTAGTAGGTATGGGGCACGCTTCTTTCAGGAGACAAG
CTACCTGAGGCAAGTAGCTAGTTGACTGTAGGTTTAGAGCACGCTAGGATAGATTCTAACTAATT
CTCTCTCTCCGGTCTTGCTCTTCCTCTTGCAAGGCGAATGGGCTTTGGGGTCGGTCTCATCCTCA
TCAGAAGTCTAAGAATGAGGAATTCCTCTTCCAACTCGTCCCGGAATGGGCGTTATGGCAAAGAA
CAAGAAAAAAACGAAAGGAGGAATTTGTCCAATAGTAACAAATGGTGCCTCCACAGGTTGACATC
CGATCCAACCTAGTAGTAAGCGATCCGCCAAAAGCAACCAAAATA
Found at i:355003 original size:25 final size:26
Alignment explanation
Indices: 354975--355028 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
354965 CTATTACCGT
*
354975 TACCGTCGGCTATTCA-TTTTTCTAC
1 TACCATCGGCTATTCATTTTTTCTAC
355000 TACCATCGGCTATTCATTTTTTCTAC
1 TACCATCGGCTATTCATTTTTTCTAC
355026 TAC
1 TAC
355029 TATAAGATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 15 0.56
26 12 0.44
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (26 bp):
TACCATCGGCTATTCATTTTTTCTAC
Left flanking sequence: Indices 354475 -- 354974
ATCCACGTGGGCGTGGGCGTTTGCGACAACTTCCGCGGCGCAGGCGGAAAATTGAGCTAACATTT
CCCAAAGTTCCATGGTATGTTTCCTTTCCAGTATCGATCGATAGAATGAGCACTGTGAACTATCC
GGATGAAAAAGGATATTATATTGGTTTAGAGAATGGGATGCACCCTTTCGAACCATGTCTCTTGG
ATAGTCTTATTTTTGAACTCGATTTTCCTTCTCGAACTATGAAATTTATAGTCTTAGCTTTAAAG
AATAGAATGAATAATGTTATAAGCGTGAAATAAGAAATAATTTGATAATTTATGTAAGCTTTATA
CAATTTGAGAAAAAAAACTTCTTCTGAACTAGATGAATCTGATGAATTTTTCCTATCTTATCTTA
CTATCTATTTGTCTCATTTTCGGCTTTTCCGAAAGACAACTGATTTTATCATGAAGGTGATTTGA
GATTTCCCTTATTTTCCTATCCTCATCCTATCTTACTATTACCGT
Right flanking sequence: Indices 355029 -- 355528
TATAAGATGCTTTTTCCCTATCCTACGTATCCAAAAATCGTCAAAACGAGATTCTGAGAGGGTTT
AACCAGAAGAGGGAGGATGGGGCATTCTACCATCCTCAACTCTCCGTCTGCAGACTTTCTGTCTA
AAGACTTGATGTCTAAAGAGAGTCTTTCTGCAGCTACCTTTGACAGGTATACAAACATAAGGTTA
TTATCGCAAATGCTAATCTGGAGAAAGAATCAGTTATCGAGTCGAACTAGAGTCTTAGCTATGTC
AGGGATTGTTCTAATGAGCAAGAAGAGTATACCGTCAGCTCTAAATCAGTTATCAGATCCTGTTC
GATATTATATACGATATTTCTCGATACGAACTCAAAGTACGAATGAAGGAAATGAAGAGCAGAAG
AATCAGATTAGTAGTTCAGAAGCTCATCAGAGTGCTACTAGCGAAACATCAAGTACTATTACCGA
GACTGAAAGTCCTACTGGGAGGGCAGAAAGGAAGGAAATCAATGA
Found at i:377332 original size:14 final size:14
Alignment explanation
Indices: 377313--377344 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
377303 TCTCTTATGT
377313 GATTTGGAATAAGA
1 GATTTGGAATAAGA
377327 GATTTGGAATAAGA
1 GATTTGGAATAAGA
377341 GATT
1 GATT
377345 GAGACGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (14 bp):
GATTTGGAATAAGA
Left flanking sequence: Indices 376813 -- 377312
CCAACCCAATCTCGATAATGAAAGCGCTAATCAAGACTTTGCGCATTAGAAAGGTCAATCTCGTA
GTCAAATAAGTAACGCATCGTCTTTTTTCTACGCTGGGCTACACTTGCTTCACCGATAGGAATTG
GTTACTGGTTCTAGCATCACACCTTAGCAACACTTGTTTCCTTGTTCTATCGGTTGATCTTGTCT
TCTGTTCGGACCTCTCTTTCTTATCTTAGGCGGGGACAGGATTCGAACCTGCAGTCTTCAGGTCA
TGAGCCTGATGAGTCGACCAATTCCTCTACCCCGCTTCTTCCCCTTCTCTTTCGAACTCCGAAAA
CCAAGGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCG
TCTTTTGACTAGAATTTGGCACGAAAGCGGGAGAACCTAGTGAACCGGGCGTACTACTCATCAGC
CACTCGAAGTCTCTTAGGTGATTTGGAGTAGATCTTCTCTTATGT
Right flanking sequence: Indices 377345 -- 377844
GAGACGAAGAAAGACGAAGAAGTGAGGTGCGAAGAGAGATTAGACGATATTAGATCTCTCTGATA
TCTTAGACGAAATTAGAAGATAAGAGAGATTAGACGAGATGAGAAGTCAATTCGTCCTACGGGGC
AAACAAAGAAGAAGAAGAGAATCGACGGAGAGAAAGAAGTACCGGTCCCTGGGCATCCCAGTCCG
AAGAAGAAGAAGCTGCAGTCCACCTTACTAAGACAGAGATCCGAACTCTATCTCCTAGCCTATTC
AATAGTAGAAAGCAGAGGTCTGTAGGCCTCATTAGAAGAAGATCTCTTGGATTCCTCGACTACCC
TATCACCTCATACTTAGCTGCATTGCCAGTACGATCCCTATCTAAGAGCTTGTCCCTACTCAACC
TCGGATGTGAGCTAAGCTAAGTGCTTAGGCTTGCACTAAGGGCGGACTGGCTTTTAGCGAATGAG
ATCGACCAATACCACCGCGCCCACCGAGACATGCCTCCAAGCTAA
Found at i:382447 original size:18 final size:18
Alignment explanation
Indices: 382424--382459 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
382414 CCCCATCAGT
*
382424 TTGCTAGGGAGAGAAGAA
1 TTGCTAGGAAGAGAAGAA
*
382442 TTGCTAGGAAGATAAGAA
1 TTGCTAGGAAGAGAAGAA
382460 ATCTCCTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.33, T:0.19
Consensus pattern (18 bp):
TTGCTAGGAAGAGAAGAA
Left flanking sequence: Indices 381924 -- 382423
TGGAATGGTAAGCATTACTCATTTGAAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATG
ACGCGAGAGCCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGACATATCAGTTGAAAAAATC
ATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCT
ACTCAAAACTAAGAGGGGGTGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAGTTGCGTTCTT
CTATGCAAGAATCAGACTTAGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGT
TCCTTCGCTGAGCACAACAGAATGGAGATAAATTTGTATCATTTCAAATCCCTATTCTTATCGAA
GAGAAGGAACGATAAAAACCGAAATCCTCCTACTCGAACAAGAAGTCCTTTAGTTAACAACTCTT
ATTTATATAGTAATTCGACCTATTGCTCCGGAGCCCCCCATCAGT
Right flanking sequence: Indices 382460 -- 382959
ATCTCCTTCTTCCTTCTTCTAGGAAGAGAAGAATTACTAGGAAGATAAGTAATCTCCTTCTTCCT
TCTTCTAGGAAGAGAAGAATTACTAGGAAGAGAAGAATTACTAGGAAGAGAAGAATTACTAGGAA
GAGAAGAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACCAAAAG
CTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAAC
CTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACA
TATCTATCCGGATAGAGGCCGGATAGAGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCA
TATAGATAGGTATCTCCGTGGATAGAGATAAAGATAGGGATCCATCTAGATCTTGATTCACTATT
TCCATTTTTTTGCTTCCTTGATTCTGATTGATTGCCTTTTTGACG
Found at i:382503 original size:51 final size:51
Alignment explanation
Indices: 382427--382561 Score: 234
Period size: 51 Copynumber: 2.6 Consensus size: 51
382417 CATCAGTTTG
* *
382427 CTAGGGAGAGAAGAATTGCTAGGAAGATAAGAAATCTCCTTCTTCCTTCTT
1 CTAGGAAGAGAAGAATTACTAGGAAGATAAGAAATCTCCTTCTTCCTTCTT
*
382478 CTAGGAAGAGAAGAATTACTAGGAAGATAAGTAATCTCCTTCTTCCTTCTT
1 CTAGGAAGAGAAGAATTACTAGGAAGATAAGAAATCTCCTTCTTCCTTCTT
*
382529 CTAGGAAGAGAAGAATTACTAGGAAGAGAAGAA
1 CTAGGAAGAGAAGAATTACTAGGAAGATAAGAA
382562 TTACTAGGAA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (51 bp):
CTAGGAAGAGAAGAATTACTAGGAAGATAAGAAATCTCCTTCTTCCTTCTT
Left flanking sequence: Indices 381927 -- 382426
AATGGTAAGCATTACTCATTTGAAAGTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACG
CGAGAGCCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGACATATCAGTTGAAAAAATCATA
GGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCTACT
CAAAACTAAGAGGGGGTGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAGTTGCGTTCTTCTA
TGCAAGAATCAGACTTAGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCC
TTCGCTGAGCACAACAGAATGGAGATAAATTTGTATCATTTCAAATCCCTATTCTTATCGAAGAG
AAGGAACGATAAAAACCGAAATCCTCCTACTCGAACAAGAAGTCCTTTAGTTAACAACTCTTATT
TATATAGTAATTCGACCTATTGCTCCGGAGCCCCCCATCAGTTTG
Right flanking sequence: Indices 382562 -- 383061
TTACTAGGAAGAGAAGAATTACTAGGAAGAGAAGAATCAAAAGGATCGAACTACCTACTCATTAT
TCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCC
TCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAAACA
TATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAGAGGCCGGATAGAGGATAGTCTA
GATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGAGATAAAGATAG
GGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTGCTTCCTTGATTCTGATTGATTGCCT
TTTTGACGACAAGTTTGAAATCTTAAGGCAAGGAAACATCGTTTTTCAATTATGACTTGCTGGGT
CGGAGCGTAGACGAGCGAGCAGAGCCCAGGAAACAGGGAAGCCCG
Found at i:382606 original size:18 final size:18
Alignment explanation
Indices: 382529--382598 Score: 140
Period size: 18 Copynumber: 3.9 Consensus size: 18
382519 CTTCCTTCTT
382529 CTAGGAAGAGAAGAATTA
1 CTAGGAAGAGAAGAATTA
382547 CTAGGAAGAGAAGAATTA
1 CTAGGAAGAGAAGAATTA
382565 CTAGGAAGAGAAGAATTA
1 CTAGGAAGAGAAGAATTA
382583 CTAGGAAGAGAAGAAT
1 CTAGGAAGAGAAGAAT
382599 CAAAAGGATC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.50, C:0.06, G:0.29, T:0.16
Consensus pattern (18 bp):
CTAGGAAGAGAAGAATTA
Left flanking sequence: Indices 382029 -- 382528
TATCGACATATCAGTTGAAAAAATCATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAA
GAACCAAAACAGAATGGTTCCGCCTACTCAAAACTAAGAGGGGGTGCCGCCTACTACTAAAATCC
CGGTTTTTGCAACAGTTGCGTTCTTCTATGCAAGAATCAGACTTAGAAAGAACAAAGAAGTTTGG
ATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGGAGATAAATTTGTATC
ATTTCAAATCCCTATTCTTATCGAAGAGAAGGAACGATAAAAACCGAAATCCTCCTACTCGAACA
AGAAGTCCTTTAGTTAACAACTCTTATTTATATAGTAATTCGACCTATTGCTCCGGAGCCCCCCA
TCAGTTTGCTAGGGAGAGAAGAATTGCTAGGAAGATAAGAAATCTCCTTCTTCCTTCTTCTAGGA
AGAGAAGAATTACTAGGAAGATAAGTAATCTCCTTCTTCCTTCTT
Right flanking sequence: Indices 382599 -- 383098
CAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTAT
CTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTT
CGGAGCGGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCC
GGATAGAGGCCGGATAGAGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAG
GTATCTCCGTGGATAGAGATAAAGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTT
TTGCTTCCTTGATTCTGATTGATTGCCTTTTTGACGACAAGTTTGAAATCTTAAGGCAAGGAAAC
ATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTAGACGAGCGAGCAGAGCCCAGGAAACAGG
GAAGCCCGTCATAGAGCAGTCGACTAGAAGTAAAAGACTGCTGGC
Found at i:388730 original size:19 final size:19
Alignment explanation
Indices: 388693--388731 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
388683 AACAACAACT
* *
388693 ACTAAATAGCTAACTAATA
1 ACTAAATAGCCAACAAATA
*
388712 ACTAAATAGCCAAGAAATA
1 ACTAAATAGCCAACAAATA
388731 A
1 A
388732 TGGTAATGTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (19 bp):
ACTAAATAGCCAACAAATA
Left flanking sequence: Indices 388193 -- 388692
AAGAGTGTGACCTGACGGGCGAACATGATCTTTACATAACCAAGAGTTAGGTCGGTTCTCCGATC
CACCTTGAAATAACACCTCCAAGGGACATCTCGAAGTAATGCCTTTCGATCTGGAAGAGTTTAGT
AGGGCGGATCATGCTTATGCGCTGTGGGCACAGAGGGTCGTCGCGCCTACTCTCCGTTGCTATAG
TATGATGTGTCACCGAGCAGATAACCACCTCCTTCCTCGGATGTATAACTCATTTAATAGTCTTG
TGTACTACTGCTATATAATCCATATAGTGTAGTGCAGCGCCGATCCACTTCTGGGGGAAGCACAT
AGCCAGCATGGCAGCTTCCAGGAATCCCCAGTCAACACTGTCGAACGCTTTCCTCAGGTCAATTT
TCACACACATCCTGCCTTTCCCTCGCTTAAGGTGGAATTTTTGAAGCATATCGTGACAAAGCAAG
AAAACGCCTACGCGTTAGCACACTTTTTCAACTACAACAACAACT
Right flanking sequence: Indices 388732 -- 389231
TGGTAATGTAATTGTTTGTAATAAAGGCTATGGTAATGTAATAAACTGAAACTACAACAACAACT
ACTAAATAGCTAACTAATAACTAAATAGCCAAGAAAGACGGCTTTCGCGCTCACCCCTTGCTTGT
TGGATGCATCGCCCTTTGATGAAAGCGGATTGCCACGGGCTAATAATGGAGTCCATAACCAACTT
AAGCCTGTTGCTTAGAACCTTTGCTAGAATCTTCTAAAAGAAGTTGGTGAGGGAGATTGGCCTGT
ATTGGTCGGGAGAAGCTGGATTTGAAACCTTGGGCACCAGAGCCATTAGAGTGGAATTTCTCTCT
CTTATCAGTCTCAGTTTTCATTATCTCATCGAGATTGGGTTGGTGTTCAGTGTACCGTACTGTAT
CGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGG
CCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAA
Found at i:389411 original size:12 final size:12
Alignment explanation
Indices: 389394--389418 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
389384 ACGTCTTGTC
389394 AACAAGCAACGG
1 AACAAGCAACGG
389406 AACAAGCAACGG
1 AACAAGCAACGG
389418 A
1 A
389419 CGAGCGCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.24, T:0.00
Consensus pattern (12 bp):
AACAAGCAACGG
Left flanking sequence: Indices 388894 -- 389393
CCACGGGCTAATAATGGAGTCCATAACCAACTTAAGCCTGTTGCTTAGAACCTTTGCTAGAATCT
TCTAAAAGAAGTTGGTGAGGGAGATTGGCCTGTATTGGTCGGGAGAAGCTGGATTTGAAACCTTG
GGCACCAGAGCCATTAGAGTGGAATTTCTCTCTCTTATCAGTCTCAGTTTTCATTATCTCATCGA
GATTGGGTTGGTGTTCAGTGTACCGTACTGTATCGAAAATCATGCATTGGATGGATGCCCGGGCA
TTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGAT
CTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTA
GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGA
GCGAGAGCGGATTGGGGCTTTGAAGAAAAACAAACACGTCTTGTC
Right flanking sequence: Indices 389419 -- 389918
CGAGCGCGCTAGCGCGAAAGCCGTTGCGCGTTAGCAACGCGCATCCGTTTTCTTGCTGCGCGCGA
AAGCCGTCTTTCTTGGCTATTTAGTTATTAGTTAGCTATTTAGTAGTAGTTTCAAAAGTGTGCTA
ACGCGCAGCCGTTTTCTTGCTAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTGTTGTG
GATTGGATGATGGAAAAACCAGCAAGCAGCAAGCTACGGAACAAGCAAACAAGCAACGGACGAGC
GCGCTAGCGCGAAAGCCAGCCGTAAGGCGTTAGCAACGCGCATCCGTTTTCTTGCTGAGCGCGAA
AGCCGTAAGGCTAACGCCTTTATTCCCGTAAGGCGTTTTCTTGCTAGCGCGAAAGCCGTATTACC
GGGTAGTTTCAAAAGTGTGCTAACGCGCAGCCGTTTTCTTGCTACGCGCGCTAGCCTTTTTCAGC
TGGCTTCAAAGCCTACGCGCGCAGTGAACTGTAATTGTGAAAAGG
Found at i:391975 original size:18 final size:18
Alignment explanation
Indices: 391935--391977 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
391925 AGAGCCCTGC
391935 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
391954 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
391971 CATAGTC
1 CATAGTC
391978 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 391435 -- 391934
GCTGTAAGCCTCGACCGATAGGGAGAGTAGCGCTACTTTAGCATAGGTGTAGTTCCGTCAGGCTT
CCCCTCGCTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCC
CGGTCGCCCTACGCTACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGGGGCGGACA
CTTTTTGTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGC
CGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGAACCACCAAGGA
ACGTCCCGCGTTCCGGCTTGTTCGAATCGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCT
CGCCTTTTGACTATTCCCCCGTTCAAATTCCGTACCGTCACGTTCCGTCAGGGGCCTTTAGTCTT
TTTATTAGAGTAGGGGTCGCGAGAGAGCAGAGCTTAGAGCCCTGC
Right flanking sequence: Indices 391978 -- 392477
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:404827 original size:12 final size:12
Alignment explanation
Indices: 404807--404836 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
404797 ACTTGATAGA
*
404807 TCTTCTCAGTCT
1 TCTTGTCAGTCT
404819 TCTTGTCAGTCT
1 TCTTGTCAGTCT
404831 TCTTGT
1 TCTTGT
404837 GTCATATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.27, G:0.13, T:0.53
Consensus pattern (12 bp):
TCTTGTCAGTCT
Left flanking sequence: Indices 404307 -- 404806
CAGCCAGGTTCAGTGTCAGTAGGACTAGCCTTTCTTTCCTTATTTACAGAGAAATGTCATTTGCT
CATTTTCAACTAGATCAACGATTGGAAGATCGGATATGCCCCATCGCCTTAGTCGACTTGTTCCT
GAGATGAGAAAGCTTGACTCGCTTATCAGAGCTTGGAAACAGACTACGCACTTAGAAGCCCTACT
CCATTGTGTTGCTTGCCTTCTGAACAGTAGGTTCGGTCAGCAGCCACTAGTAGAGCTGTAGCGAG
AGTTCAGTCTTGGGATAGGCTATAGGGAAGAACTGACTTCAAGCGGGGATCTTTCAGAGGAAAGA
GGTGATTCTAATAGAAGGTCCGCACCGGGCAGTTAGCTAGTGAGAAGTCCAAGTGAGAACTCTCT
TAGTTGAACAATCTGCAAGTAATGGAATGTACCCTCCTAACCCCTTTCTTTTAGAGTATAGATCA
AGTCCTTTACGTAGTTCTATTTATCTCACTCTCGCACTTGATAGA
Right flanking sequence: Indices 404837 -- 405336
GTCATATTCACTCTTTCAGGAAAGCACCTCCCTTGCAGCTAACTAATGGCTGCCCACTTTCTTTC
TCCTGTTTTGACCGTACTCTTATCCTTAGTATAGTAAGCTGGCGGGCTTCTCCTAAGAGAATGCC
TTCACTCCACTCCCCCTTCAGACGCCTATGGCGAACTAAGGTACGGAGTCTAAATTTCCCTTTTA
CTTAAAAAAGAAGGAAAGTCTAAAAAAAGAAGGAAAGTCTAGTAGAGGCACTGCACTAGTAACAT
ATAGTATAGGTAAGGGTCCGAAGGAGAGGCCCTTTCCTTTAATCGCTTCGCTTGGGATCACCGCC
TGGGCCTTTCAGGGCGTGTGACTTTATGAACAAATATAAAGGAATCATTGTGAGGAAATCCAGTA
GCTGGAAGAGTCACTCCCTCTCCCATGTCTTATGGTCTTCCAGTTGAGATTGATGGTTCCGAGTC
AGATTCAGATTTCGAGAAGGAGGAACTGAACCATTATGGCGAGGA
Found at i:405059 original size:19 final size:19
Alignment explanation
Indices: 405035--405072 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
405025 CCTTTTACTT
405035 AAAAAAGAAGGAAAGTCTA
1 AAAAAAGAAGGAAAGTCTA
405054 AAAAAAGAAGGAAAGTCTA
1 AAAAAAGAAGGAAAGTCTA
405073 GTAGAGGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.21, T:0.11
Consensus pattern (19 bp):
AAAAAAGAAGGAAAGTCTA
Left flanking sequence: Indices 404535 -- 405034
CGGTCAGCAGCCACTAGTAGAGCTGTAGCGAGAGTTCAGTCTTGGGATAGGCTATAGGGAAGAAC
TGACTTCAAGCGGGGATCTTTCAGAGGAAAGAGGTGATTCTAATAGAAGGTCCGCACCGGGCAGT
TAGCTAGTGAGAAGTCCAAGTGAGAACTCTCTTAGTTGAACAATCTGCAAGTAATGGAATGTACC
CTCCTAACCCCTTTCTTTTAGAGTATAGATCAAGTCCTTTACGTAGTTCTATTTATCTCACTCTC
GCACTTGATAGATCTTCTCAGTCTTCTTGTCAGTCTTCTTGTGTCATATTCACTCTTTCAGGAAA
GCACCTCCCTTGCAGCTAACTAATGGCTGCCCACTTTCTTTCTCCTGTTTTGACCGTACTCTTAT
CCTTAGTATAGTAAGCTGGCGGGCTTCTCCTAAGAGAATGCCTTCACTCCACTCCCCCTTCAGAC
GCCTATGGCGAACTAAGGTACGGAGTCTAAATTTCCCTTTTACTT
Right flanking sequence: Indices 405073 -- 405572
GTAGAGGCACTGCACTAGTAACATATAGTATAGGTAAGGGTCCGAAGGAGAGGCCCTTTCCTTTA
ATCGCTTCGCTTGGGATCACCGCCTGGGCCTTTCAGGGCGTGTGACTTTATGAACAAATATAAAG
GAATCATTGTGAGGAAATCCAGTAGCTGGAAGAGTCACTCCCTCTCCCATGTCTTATGGTCTTCC
AGTTGAGATTGATGGTTCCGAGTCAGATTCAGATTTCGAGAAGGAGGAACTGAACCATTATGGCG
AGGAAAGGATGGCGACTGCCTAAGAAGGATAGAAAAGAAAGGGTGGGCCATTAATAAGATTGTAA
GTAATCATAAAGAGCACCTTCCCCCACACCAGGGGCTCAGCTCCTAGTTACCACATAATCCATCC
ACGATCGCATCTTAGTATGTTATAATTGCACGGGATAGCAAACAAATGGTTTAAGAGAGAAGGTT
TCTGAGTTCGGAATCGGAATTAGGTAACTAGAAAAAGAACTATTC
Found at i:424525 original size:16 final size:16
Alignment explanation
Indices: 424504--424536 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
424494 CCCTTTCATT
424504 TCTAAGTAAATTATGC
1 TCTAAGTAAATTATGC
424520 TCTAAGTAAATTATGC
1 TCTAAGTAAATTATGC
424536 T
1 T
424537 TGCTTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (16 bp):
TCTAAGTAAATTATGC
Left flanking sequence: Indices 424004 -- 424503
GATGGAACGTCTACCAATTGTGAATGAGCGGATCGGGCTTGCTTGGAATGGTGAACAGGCCCTGA
CTGGAAGTGCCGAAAGAACCACTACAAGAGGGGAGCCGGCTTTCACACCCATGCTATGACCCTTG
CTATGAACTTCTCATGCCAATTCCCCAATACCTCTTTTACCCTTTTAGAGCTAAAAAGGAGTTGA
CCAGTCCAATCGATTTCCTTCATCATTCTTTTGGTCATTCCTTAGCACAAGCACTAAGCGATAAT
AATTCCTTCTTCTGGCCAAAGATACTTCTGGAGAAGCTTAAGACACCTTGATTTGGAAAGCGATC
GATGATCAATCCATCTGTCCGCACTTCCTCCTGGTCCTGCTGTATCTCTGCCTACGACTTCTTTC
TTTACCCTGCTCGGAATGAAAGGAGACCTCCCGTAGGTGGCCTCTTACCTCTCTTGCTTCCAAGT
GAGCACCCAGGTGAACCGTAGTGCCCAGGGCGTTCCCCTTTCATT
Right flanking sequence: Indices 424537 -- 425036
TGCTTTCTTTTCTTCATTAATCTTCACGCCCCCGCCTTTGTACAATTAGAATCCTAGCACACGTC
TTTTTGAACTATGAGAGCTGTTTGTATACTTGCGTAAGAGGCTTTTTCCGTGATTCCAGTTAGGG
ACTCGGGTGCCCTTATTTCATATCTTTTTTGGTACTGCCCCATAAGAAGAATCAGTAGGCTCAAG
TAGCCTTTTTGATGCATAAGATATGGAGGGCTTCTGCGCCCCAATCATGATATTTTCGTTTGTGG
CCCTTCTTGAATTGAATTCAAAGATCGATGGCTGTGAAGCATGCTGGGAATGAGGTAAGGCTCTG
ACGTAGCCAAAAAACCATTCGACCTCGGTCGAGATCTAAGCCGGTCTATAGCACAGGTGCTGCAG
TGAAAGATTCCGCCGTAGCTAGATGCCTTGAAGAAAGAGCAAAAAGACTCACTTTGGGTTACTCC
ACTGAAAGGGCAACTAAAGGAAAGGGCATTCACCCGATCTATGAC
Found at i:439760 original size:20 final size:19
Alignment explanation
Indices: 439735--439772 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
439725 AGCGCGCTCG
439735 TCCGTTGCTTGTTTGCTTGT
1 TCCGTTGCTTG-TTGCTTGT
439755 TCCGTTGCTTGTTGCTTG
1 TCCGTTGCTTGTTGCTTG
439773 CTGCTCGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.00, C:0.21, G:0.26, T:0.53
Consensus pattern (19 bp):
TCCGTTGCTTGTTGCTTGT
Left flanking sequence: Indices 439235 -- 439734
TGTAAAAAATCCATATAAAAAAATCCCTTCCCGGCCGACGGGGAGCTTTCCGATCAACCAATCCC
CTCAGGGGCATCTGTGCTAGGTAGGCCCAGGGATCACTGATTAGTCGAATGAGCCCCTCCCTCTG
GCCTATCATTCATTGGTCGACCCGGCTGGTGGCTCCTGCATCTCCTGCGTCTCCATGGGGGCCCT
TCCGCCAAGTTTGCTGCTAGGAGTCCCTCTAGTCGAATCAATAATCAATAGAAGTCCCAATAGAA
GTTGACTGACCTGGCTCTTCAATCGACGATCTACTGCTCCCTCTTAGTTGCGGATGCCCATGCTT
GGATTCTAAACCCCTAGCCAGTGAGTGATGAATCCCCAGGAAGATCGGAGTATTGAATTCCGTAT
TGTATGGAATTCCGTTCCAGCAAGAAAACGCCTTACGGCTTTCGCGCTCAGCAAGAAAACGGATG
CATGCGCGTTGCTAACGCCTTACGGCTTTCGCGCTAGCGCGCTCG
Right flanking sequence: Indices 439773 -- 440272
CTGCTCGTGGAGTGCTTATGCACTCCACTCGTTACCACTAAACGACGAAGCCAGGAGCGGAAGGA
GGGACTTGAACCCTCAACCTCAGCCTTGGCAAGGCTATGCTCTACCATTAAGCTATTTCCGCCAG
CGGGGCAACGTCAAGTAGCGAAGCACTACTGAGCAATTCACGTATCACTTGATACGGACGACTTC
TGTTTTTCCGCCGGACCAAACTCTTGACCTCCGATCGAGCTACAAGCACGAGTAGGTAGGCGGCT
GGGAAGGAAGGACCTTTCTTTTTGCTTCGCGCCAGATGAGATGATGATTAGTGGATCAGGGGAGG
TTTGTGTGTGCTCTTTATCACTATCACTAAAGGGGCTGGGCTGCCTTTTCAATCAATCTCCGGCC
GCTCAGTGCCGCTATTGGTGCGATAAGTAAGGAGTCTTGGTCTCGAGTCGAGCTGGGGTGGGGCG
TCATTTCATTCTCGTAACGGGAGTGAGTGCACCGCAAGACCAGAC
Done.