123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_053920
Parameters: 2 7 7 80 10 50 500
Length:  440720

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2076--2103	14	2.0	14	100	0	56	14	28	28	28	1.95
2415--2477	30	2.1	30	81	0	72	31	6	23	38	1.80
5433--5462	5	6.0	5	100	0	60	40	0	20	40	1.52
6711--6789	39	2.0	39	97	0	149	21	27	18	31	1.97
18545--18608	32	2.0	32	100	0	128	21	31	18	28	1.97
31137--31215	39	2.0	39	97	0	149	31	18	27	21	1.97
32464--32493	5	6.0	5	100	0	60	40	20	0	40	1.52
35449--35521	30	2.4	30	79	0	74	39	23	6	30	1.81
35709--35783	33	2.3	33	85	0	114	26	24	10	38	1.88
35823--35850	14	2.0	14	100	0	56	28	28	28	14	1.95
38882--38919	20	1.9	19	94	5	67	52	26	21	0	1.47
44958--45086	43	3.0	43	100	0	258	23	18	13	44	1.86
50140--50182	22	2.0	22	85	0	59	20	34	32	11	1.89
88240--88277	20	1.9	19	94	5	67	0	21	26	52	1.47
100485--100541	30	1.9	30	88	0	87	19	24	21	35	1.96
109165--109343	97	1.8	97	98	0	349	34	20	21	24	1.97
111031--111060	12	2.5	12	94	0	51	46	20	0	33	1.51
114814--114861	24	2.0	24	100	0	96	8	16	8	66	1.42
121188--121271	27	3.1	27	91	0	132	23	26	29	20	1.99
139734--139766	16	2.1	16	100	0	66	39	12	12	36	1.80
144654--144692	19	2.1	19	85	0	51	56	15	7	20	1.63
160133--160184	26	2.0	26	92	0	86	28	13	26	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170797--170841	18	2.5	18	88	0	72	33	33	24	8	1.86
173769--173807	20	2.0	20	100	0	78	35	23	5	35	1.77
175822--175851	15	2.0	15	100	0	60	40	26	0	33	1.57
182877--182901	12	2.1	12	100	0	50	52	24	24	0	1.48
185579--185631	4	13.2	4	100	0	106	75	0	24	0	0.80
186761--186794	16	2.1	17	94	5	61	17	41	17	23	1.90
186951--187007	28	2.0	28	100	0	114	31	14	26	28	1.94
187337--187372	18	2.0	18	94	0	63	19	33	36	11	1.87
193106--193143	19	2.0	19	100	0	76	36	5	26	31	1.79
195606--195644	17	2.3	17	90	0	60	38	2	30	28	1.70
195957--196000	23	1.9	23	100	0	88	38	13	15	31	1.87
221194--221231	4	9.5	4	100	0	76	47	0	52	0	1.00
223888--223949	2	32.0	2	77	6	56	40	3	1	54	1.26
230057--230103	5	9.4	5	100	0	94	38	40	21	0	1.53
245214--245263	24	2.1	24	92	0	82	32	8	36	24	1.84
267549--267632	41	2.0	42	86	6	118	33	19	27	20	1.96
290447--290529	32	2.7	31	88	5	132	21	42	7	28	1.80
293372--293409	20	1.9	20	94	0	67	52	26	21	0	1.47
302642--302693	24	2.2	24	96	0	95	11	25	25	38	1.89
303966--304004	13	2.9	13	92	3	60	20	10	35	33	1.86
339671--339703	15	2.1	16	88	5	50	42	9	30	18	1.81
350487--350556	33	2.1	33	100	0	140	24	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354975--355028	25	2.1	26	93	3	92	18	27	9	44	1.80
377313--377344	14	2.3	14	100	0	64	40	0	28	31	1.57
382424--382459	18	2.0	18	88	0	54	41	5	33	19	1.75
382427--382561	51	2.6	51	94	0	234	37	14	22	25	1.93
382529--382598	18	3.9	18	100	0	140	50	5	28	15	1.67
388693--388731	19	2.1	19	85	0	51	56	15	7	20	1.63
389394--389418	12	2.1	12	100	0	50	52	24	24	0	1.48
391935--391977	18	2.4	18	81	18	54	18	20	25	34	1.96
404807--404836	12	2.5	12	94	0	51	6	26	13	53	1.64
405035--405072	19	2.0	19	100	0	76	63	5	21	10	1.46
424504--424536	16	2.1	16	100	0	66	36	12	12	39	1.80
439735--439772	20	1.9	19	94	5	67	0	21	26	52	1.47

Tables:   1

The End!