Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_053368
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1122546
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
File 1 of 2
Found at i:2456 original size:23 final size:23
Alignment explanation
Indices: 2389--2457 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
2379 AGTTGAGGCC
**
2389 AGCAAGAAAACGCCCTATATAGC
1 AGCAAGAAAACGCCCTATATATA
2412 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
2435 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
2458 TAAAGGGCTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.46, C:0.23, G:0.14, T:0.16
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 1889 -- 2388
AAAAGGCAGCCCAGCCAGCCCGCCCCCTTTAGTGATAGTGAGAAAGAGCACACACAAACCTCCCC
TGATCCACTAATCATCATCTCATCTGGCGCGAAGCAAAAAGAAAGGTCCCTCCCTCCTTCCCAGC
CCAGCCGCCTACCTACTCGTGCTTGTAGCTCGATCGGAGGTCAAGAGTTTGGGTAGGCGGAAAAA
CAGAAGTCGTCCGTATCAAGTGATACGTGAATTGCTCAGTAGTGCTTCGCTACTTGACGTTGCCC
CGCTGGCGGAAATAGCTTAATGGTAGAGCATAGCCTTGCCAAGGCTGAGGTTGAGGGTTCAAGTC
CCTCCTTCCGCTCCTGGCTTCGTCGTTTAGTGGTAACGAGTGGAGTGCATAAGCACTCCACGAGC
AGCAAGCAAGAAGCAAGGCCCCGCAATCCATTAGTGAATTAGTTGCGGCAATTCCGGCACTATTC
AATGAAAGAGCAAGAGCAAGAACTATTTCATTGCGAGTTGAGGCC
Right flanking sequence: Indices 2458 -- 2957
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTT
GTTGGCTGCGGTTCTTGAGACAAGGAAATCTACTTCGATGTATTGCTCGTTGATAGCTGACCTTA
TCTCCGGAGACTCTCTCAGGTTCGACCTACGCCTTAATAATAGAATTAGTACGGTTCTGTACTTC
CTACACCCAGTTGCTCTCCTTCGTTTTGGTCTTCTAGCTCCGCAGGTCTATCCGGGAGTATCGTC
TCGCACAAAGAGATGAGATCTCAGTTTGAGACTTTCTTCTCCCCCCTTATATCGTTTAAGGAGTT
TCTCCTTCGTTTCAGCGAGTAGCTACCTTTGCTTTTAACTTCGTCCTTAAGCGCATTTCTGGAGC
AGCTTCTCTTCAAGGCCAGCCCTGCTAGGGTATCGGGTTTCAAGT
Found at i:2575 original size:64 final size:63
Alignment explanation
Indices: 2470--2593 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 63
2460 AAGGGCTAAC
*
2470 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTA-CCGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCG-TAGCGCTC-AGCAGTTGCTTGTTGGCGTTA
*
2534 GCACCTTACGTTTATTGAATGGGGCTTTCGCGC-TAGCGCGCTCAGGAGTTGCTTGTTGGC
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTA--GCGCTCAGCAGTTGCTTGTTGGC
2594 TGCGGTTCTT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
62 2 0.04
63 1 0.02
64 52 0.95
ACGTcount: A:0.13, C:0.23, G:0.30, T:0.34
Consensus pattern (63 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTAGCGCTCAGCAGTTGCTTGTTGGCGTTA
Left flanking sequence: Indices 1970 -- 2469
ATCTCATCTGGCGCGAAGCAAAAAGAAAGGTCCCTCCCTCCTTCCCAGCCCAGCCGCCTACCTAC
TCGTGCTTGTAGCTCGATCGGAGGTCAAGAGTTTGGGTAGGCGGAAAAACAGAAGTCGTCCGTAT
CAAGTGATACGTGAATTGCTCAGTAGTGCTTCGCTACTTGACGTTGCCCCGCTGGCGGAAATAGC
TTAATGGTAGAGCATAGCCTTGCCAAGGCTGAGGTTGAGGGTTCAAGTCCCTCCTTCCGCTCCTG
GCTTCGTCGTTTAGTGGTAACGAGTGGAGTGCATAAGCACTCCACGAGCAGCAAGCAAGAAGCAA
GGCCCCGCAATCCATTAGTGAATTAGTTGCGGCAATTCCGGCACTATTCAATGAAAGAGCAAGAG
CAAGAACTATTTCATTGCGAGTTGAGGCCAGCAAGAAAACGCCCTATATAGCAGCAAGAAAACGC
CCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGGCTAAC
Right flanking sequence: Indices 2594 -- 3093
TGCGGTTCTTGAGACAAGGAAATCTACTTCGATGTATTGCTCGTTGATAGCTGACCTTATCTCCG
GAGACTCTCTCAGGTTCGACCTACGCCTTAATAATAGAATTAGTACGGTTCTGTACTTCCTACAC
CCAGTTGCTCTCCTTCGTTTTGGTCTTCTAGCTCCGCAGGTCTATCCGGGAGTATCGTCTCGCAC
AAAGAGATGAGATCTCAGTTTGAGACTTTCTTCTCCCCCCTTATATCGTTTAAGGAGTTTCTCCT
TCGTTTCAGCGAGTAGCTACCTTTGCTTTTAACTTCGTCCTTAAGCGCATTTCTGGAGCAGCTTC
TCTTCAAGGCCAGCCCTGCTAGGGTATCGGGTTTCAAGTAGTGAACGGGGGGATCGGCATGGGCT
ATGGTTCTTGCCTTTCGGTATGGTAGTGTATCAATCTTCCCTAGGATCGCCCAGGCACGGCTACA
CTGAAGTTGGTCACTTCTTGTAGCATATCAAGGGGAAGTCCTGGA
Found at i:8607 original size:15 final size:16
Alignment explanation
Indices: 8587--8617 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
8577 TTCCGCTTCC
8587 CCAGTCTAC-GGTCTA
1 CCAGTCTACAGGTCTA
8602 CCAGTCTACAGGTCTA
1 CCAGTCTACAGGTCTA
8618 ACTGTGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (16 bp):
CCAGTCTACAGGTCTA
Left flanking sequence: Indices 8087 -- 8586
AAGCTGCTGACGAAGTACTTCCTCACGGGTCATTCGCCCGCTTGCCCGTTCGCACCGGGACTGCG
ATTGCCCTTCTTAGCTTTCATTCTCTCGATGACCTCTTTTGGACTGGAACTAACCAAAGGGGTGT
TCATGTCAGGTAGTTAGCTTCAGGTAGTGTATGCCTGATATGCCTGTGAGGCATTTTAGTTCAAT
CAAGGCGCTTTGCCACTTTCTAAACAGAGGCCCTCCGGCCTTCACTTTCGAACTCTCATCAAAGC
CCGTTCCGAACTCTCCAGCTTAAAAACCGGTGGCAGCAGCCTCATCAACGATGAGAACACGCTTG
GCGCACTCAACCTATACCGATAGGGAGAGGAAACCTGCTGAGTGAAATAAACCTTTCCAGGGAGA
TTGACACTGCATTCTAAATCTTCACAATCGCCTTAGCTTACTCGAGTGGGCCTGCAGATTCTAAG
TGACGCACCGACCCTACTTCTCCGAGCGGTACTGCTTCCGCTTCC
Right flanking sequence: Indices 8618 -- 9117
ACTGTGAATTGACTTCTTTTTATTCCTATCCGTTCTATGATCTCGAAGACCTGCCTTTTTTGTGT
GTTCGAATGGGTTGTAGTGAGATAGGTAGGGGCGCTTTGCTTGTGGTGCCTCGGTAATCGCTAAC
GCAGGCTAGATGAATCTGAATCACGACTAATATCATAAGATAAGAAAGAGAATAAATGAAACACA
ACAAAGGAAGGATACGGTTCACTAGGTTCTACCACTACAAGGCCCAATCATACTCAAAAGAAGAG
TTTGATCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTA
GGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCCAGGAGGTGGG
AACAGTTTAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCC
AAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTA
Found at i:16575 original size:24 final size:24
Alignment explanation
Indices: 16538--16583 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
16528 AGCTCTTCCC
16538 GACTTGATGCCTTGACCTGTTACT
1 GACTTGATGCCTTGACCTGTTACT
* * *
16562 GACTTTATGGCTTGAGCTGTTA
1 GACTTGATGCCTTGACCTGTTA
16584 ACGGCAATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (24 bp):
GACTTGATGCCTTGACCTGTTACT
Left flanking sequence: Indices 16038 -- 16537
AGCACTTAATCCTTCAGTAAAGACCGGTTGACACCGCTTTTCAAACACTTTTTGTTAGCAGACGA
TTTGAAAGTTCCTTGCCTTTTCCCTGGAACCGGGTATGAATTAAAAAATCCCTTTACCTCGACCA
GGATCAACTCCTTCCATGCCCCACGAAAAAGCGAAAAGTAAAGCAGTCAACAAGCCGTTGTTAAA
GTCTTTGCAACCTCAGTTCACTGTATCAGTGTCAATGAATAAGGCTTGAAGACTGAAAAAAGAAG
TTTCATTTTCCCGGGATTTTTCAATGAAAAGCGTTTTGGATGGCTGTTTTGAAGCTATTATCGTA
TATTATCATTTTACGGAATATAAGCTAAACTGCTCTAAAAGTGTGCCTAAACCCCGTCTTTTTAG
TCTCATTTTCATGTTATAGCGGATTACTAAGCGAACTATGTGAAATGCTTAACACACCGCTTTCC
TTGACCGGGTTTAGACCTGCAACTCTTATCCGAGCAGCTCTTCCC
Right flanking sequence: Indices 16584 -- 17083
ACGGCAATTCCTCTCTGACCGGTAACAGAGAATCTTCCGCCGCTGCCCCATATTCAATAAGGCAA
GTAGCTAGGGTCGGTCAATCTGCCTCTTCCCCTTTCGAAAAGTGACTTAAGGAAAGAAAAGAAGA
AATTCGATCTAGCCAGCTGGTTGTTCCTGTAAGCCAATATGGATGCTGGCAAAGAGGTGAGTCAT
TTACAAGCTAAAAAGAGTGAGTATTACAGTCTTAAGGAAAGAAGGTAGGGTTGCTAGGGATGTTA
GGTCTAAGGCTGGGTGTTACACCTTGGAGTGAACCTCAGTGCCTTCGAAAGCTCTATCTAAGCAG
CTTTTTAAATATAGCCAGTGTGCCGTGCATGTGTATCAGCCACAGAAGAGACTTCCGGAGAAAGG
TCTTTGCTCTAACCGGCAGCCGGGGAAGGCTTTGATGGGAGTGGTCTCTTTGCTACGACATAGTC
AAAGGAAGGAGGACTTTGATCCCAGTGAAGCAGTTGAGCAATAGG
Found at i:33496 original size:6 final size:6
Alignment explanation
Indices: 33487--33517 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
33477 TCCGGAGGAG
*
33487 CCTGCT CCTGCT CCTGCT CCTGCT CCGGCT C
1 CCTGCT CCTGCT CCTGCT CCTGCT CCTGCT C
33518 AAGGGGAGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.52, G:0.19, T:0.29
Consensus pattern (6 bp):
CCTGCT
Left flanking sequence: Indices 32987 -- 33486
TTGGGTACAGAGTAGGTTCGAATCCTGTCACCTTGGTGTGGCGAAAAATATTCTTTTTTATTCAA
TTCCTTCCTATGTTAAGTATTCTTATAGCATTTCTGTTGAGTTCGATAGTTTCTTTGATCCTACT
TGCACTTACCTTTGTATTGTGTTCTAATAGTTCGACCCGTGGTCTTTTTATGATAAGATCAATTC
CTTGTCTGTTAGTATCTTTCGTGGCACTCGTTTTATATTGGATTTGTATAAGGCTGGACTTAGGA
GATCTTTTTTGGTTTTTAAGTCGTCACTTGCAGGGCGCTATAATGGATCGAGCCCTCCGCTTTTT
ATTAGCTCAAGTGGGCTGCTCCGGGGGTCTGGCCTTCGCCTGCGTTTTTCTTTTCAAGGCATTCC
TCCCCGTTCTGGGGGGGCAACCAGTTCTGATGAGCGGCCGCGGCATGCTGGATCTGAATTTGCCG
CCACAACCGGAACCAGAGCAGCCCCCGGTTCCAGTTCCGGAGGAG
Right flanking sequence: Indices 33518 -- 34017
AAGGGGAGCGGCCTAGAAATTGGAACCTGAACGTGGAACCAGAGGAATTCACTATCGAAAAAGCA
AGAGTAAATGAGCGTAAGAGCACTCTAGCTGCAGTATTGCCTCACTTTTTCGAGAGAGAATTTTC
CATCGAGATATTAAATGGAAAGGCATACGTTCAAGCTTTAATTAACCACTGGGCAAGCGTATTTC
CTTCCATACAAAAATGTACTTTTGAGGACAATGGAGATCCCATCTCATTGGAGGATGCAAGGTCC
CTTAACAGGAAATTAGGCGCAGCCTTGGCAGCTTTGGACACGCCTAATGAAACCAGAACTATAAA
ACAAAACGAAATGGTAAAACAACTACTTGACGTAGCGGAAGATTTTGTAGAAGATGACTGACTGG
GGGTTCGATTCCTGCTATACGCGATGTGGCGAAAAAGACTGATTCAACGAGATATGCCTTGCCTG
CATTAAGATTTCAAACTTGTCGTCCACTTCCAGGAAATGTTCGGA
Found at i:34873 original size:9 final size:9
Alignment explanation
Indices: 34859--34883 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
34849 CTAGGAAGAG
34859 AAGAATCAA
1 AAGAATCAA
34868 AAGAATCAA
1 AAGAATCAA
34877 AAGAATC
1 AAGAATC
34884 TGGACATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (9 bp):
AAGAATCAA
Left flanking sequence: Indices 34359 -- 34858
GTGTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAGCCCGCGGTGAAGAAATAAG
GAGATCTTTCTATATCGACATATCAGTTGAAAAAATCATAGGAAAATTCCTGAATAAAAAGGTAA
GAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCTACTCAAAACTAAGAGGGGGTGCCGCCTA
CTACTAAAATCCCGGTTTTTGCAACGGTTGCGTTCTTCTATGCAAGAAAAAGACTTAGAAAGAAC
AAAGAAGTTTGGATCCGAAAAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGA
AGCAAAATTTGTATCATTTCAAATCGTTCCTTCTCTTCGATAAGAAAAACGAGAAAAACCGAAAT
CTTCTACTACTTAAAAGGGCAAGAAGAAGAAGTCCTATAGTTCAAAACTCTTATTTATATAGTAG
TTCGACCTATTGCTCCGGATCCTCCCATCAGTTTACTAGGAAGAG
Right flanking sequence: Indices 34884 -- 35383
TGGACATATATGTGTGGAGAACGGAGCCAAGAAGCAAGGGATTCGCGGCAATTCCGGCACTATTC
AATAAAAGAGCAAGTCAAAAGAATCAAAAGAATCAAAAGAATCAAAAGGATCGAACTACCTAATC
ATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCAC
ATCCCTCACGACATAAGATTGAAAGATCCACACCTTCATCTTCGGAGCGGAAACGGACGTGGCCA
AAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAGAGGATAGTCTAGATCGA
TTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGAGATAAAGATAGGGATCC
ATCTAGATCTTGATTAACTATTTCCATTTTTTTTGATTCCGCCTTTTTTACGACAAGTTTGAAAT
CTGGAAACATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTA
Found at i:34977 original size:9 final size:9
Alignment explanation
Indices: 34963--34996 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
34953 AAAGAGCAAG
34963 TCAAAAGAA
1 TCAAAAGAA
34972 TCAAAAGAA
1 TCAAAAGAA
34981 TCAAAAGAA
1 TCAAAAGAA
34990 TCAAAAG
1 TCAAAAG
34997 GATCGAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.65, C:0.12, G:0.12, T:0.12
Consensus pattern (9 bp):
TCAAAAGAA
Left flanking sequence: Indices 34463 -- 34962
AGGAAAATTCCTGAATAAAAAGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCTAC
TCAAAACTAAGAGGGGGTGCCGCCTACTACTAAAATCCCGGTTTTTGCAACGGTTGCGTTCTTCT
ATGCAAGAAAAAGACTTAGAAAGAACAAAGAAGTTTGGATCCGAAAAAAAAGTATGCTTAGGCAG
TTCCTTCGCTGAGCACAACAGAATGAAGCAAAATTTGTATCATTTCAAATCGTTCCTTCTCTTCG
ATAAGAAAAACGAGAAAAACCGAAATCTTCTACTACTTAAAAGGGCAAGAAGAAGAAGTCCTATA
GTTCAAAACTCTTATTTATATAGTAGTTCGACCTATTGCTCCGGATCCTCCCATCAGTTTACTAG
GAAGAGAAGAATCAAAAGAATCAAAAGAATCTGGACATATATGTGTGGAGAACGGAGCCAAGAAG
CAAGGGATTCGCGGCAATTCCGGCACTATTCAATAAAAGAGCAAG
Right flanking sequence: Indices 34997 -- 35496
GATCGAACTACCTAATCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATG
GACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCACACCTTCATCTTCGGAGC
GGAAACGGACGTGGCCAAAACATATAAAGATCGGCGTAGTCGCTCGGACATATCTATCCGGATAG
AGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTGGATAGA
GATAAAGATAGGGATCCATCTAGATCTTGATTAACTATTTCCATTTTTTTTGATTCCGCCTTTTT
TACGACAAGTTTGAAATCTGGAAACATCGTTTTTCAATTATGACTTGCTGGGTCGGAGCGTAGAC
GAGCGAGCAGAGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCGACTAGAAGTAAAAGACTG
CTGGCCTGAGAGAAGGCGGCCTCTCTCGGGAAACATGGCCCAATT
Found at i:36884 original size:23 final size:23
Alignment explanation
Indices: 36854--36922 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
36844 AGTAAGCGCC
36854 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
36877 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
36900 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
36923 TAAAGGGCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.17
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 36354 -- 36853
CTTTTCAGAAGTATTCGTCTAGTAAGGGAGGAACGGTTAGCTGTTAGGTAGGGCAGCTCTTGTAG
CTAGCTCCTCTGGTCTTGTAGCTCTAGTTGGGCTAAGGGTTGGTAGCGCTTCTTGCCTATGCAAT
CATACAATGGGGAAGGGAATATTTTCTGACTATAGAAAAAATAGAAAAGTGAAAGAGAAAACGCT
AAAATAGATAGGATAGAGAAAACCCGGCATCTGAAGAAGCTGCTTTAGCTGCTCTTCTAGCAGCT
AGGTCAGCCACGTTCGAGATAGGCAGTTCGGTCGGCTTGTAGCTCTTCCTTTTGCAGCAGTTAGG
CAATGTTAGGCAAGTGGTACCTTGCTGAGTCCCTTGGCGCATTAAGGGAAGAGAGGTAAAGGCTA
ACGCGCTACTTCCGCTAGCAACCTGCCGCGTCCGTTTTTCATCCGCACTCACTTCAGCAATTTAA
GCGCAATCCATTAGTGAATTAGTTGCCAATTCGTTAGTAAGCGCC
Right flanking sequence: Indices 36923 -- 37422
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGCCGGGCAGCAAGAAAACGTA
TGCAGCAAGAAAACGTATGTGCGTGACTAACGCACAACGGCTTTCGCGCTAGGCTTGAAACCGTT
GCTTGTTGCGCAACGGCTTTCGCGCTAGGGCGCTCTACCGTTGCTTGTTGAGTTGCTTGTTGGCG
TTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTTGTTAGATG
CCGCAATCCATTAAAGAGCAATTCGTTAGCTTCAACCCGCAATAACTATGAAATTGCGAATTGAG
GCGTTAGCAACGAGTTCAAAACTAGTAGCTTCCAGTTTGAGCTCAGTCAAGGCCTCATTAAAGAA
TTGCTTGAACCCTTGGCTTACCATTTCTGAGTTGGCTCCTTCCTT
Found at i:37059 original size:17 final size:17
Alignment explanation
Indices: 37037--37071 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
37027 CGCGCGCCGG
37037 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
37054 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
37071 G
1 G
37072 TGCGTGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 36537 -- 37036
AGAGAAAACGCTAAAATAGATAGGATAGAGAAAACCCGGCATCTGAAGAAGCTGCTTTAGCTGCT
CTTCTAGCAGCTAGGTCAGCCACGTTCGAGATAGGCAGTTCGGTCGGCTTGTAGCTCTTCCTTTT
GCAGCAGTTAGGCAATGTTAGGCAAGTGGTACCTTGCTGAGTCCCTTGGCGCATTAAGGGAAGAG
AGGTAAAGGCTAACGCGCTACTTCCGCTAGCAACCTGCCGCGTCCGTTTTTCATCCGCACTCACT
TCAGCAATTTAAGCGCAATCCATTAGTGAATTAGTTGCCAATTCGTTAGTAAGCGCCAGCAAGAA
AACGCCCTATATATAAGCAAGAAAACGCCCTATATATAAGCAAGAAAACGCCCTATATATATAAA
GGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTT
GGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGCCGG
Right flanking sequence: Indices 37072 -- 37571
TGCGTGACTAACGCACAACGGCTTTCGCGCTAGGCTTGAAACCGTTGCTTGTTGCGCAACGGCTT
TCGCGCTAGGGCGCTCTACCGTTGCTTGTTGAGTTGCTTGTTGGCGTTAGCACCTTACGTTTATT
GAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTTGTTAGATGCCGCAATCCATTAAAGAGC
AATTCGTTAGCTTCAACCCGCAATAACTATGAAATTGCGAATTGAGGCGTTAGCAACGAGTTCAA
AACTAGTAGCTTCCAGTTTGAGCTCAGTCAAGGCCTCATTAAAGAATTGCTTGAACCCTTGGCTT
ACCATTTCTGAGTTGGCTCCTTCCTTAATAGCAAAAGCTATATCGTCAGCGTAGCGCACATACCT
AATTCTCGCTTCTTTACTCATAAAGTCTTGCATCTTCACATCAAGTTGGTGAATATCAATGTTCA
TTAAGACGGGAGACAACGGACTGCCCTGAGGGATCCCTTTTATAC
Found at i:51097 original size:44 final size:44
Alignment explanation
Indices: 51047--51134 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
51037 AGGGAACAAA
51047 GCCAACTGGTAAACTCATGCCAGGGGATGTCTTTCTCAAGCGTT
1 GCCAACTGGTAAACTCATGCCAGGGGATGTCTTTCTCAAGCGTT
51091 GCCAACTGGTAAACTCATGCCAGGGGATGTCTTTCTCAAGCGTT
1 GCCAACTGGTAAACTCATGCCAGGGGATGTCTTTCTCAAGCGTT
51135 TAGTTAGCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (44 bp):
GCCAACTGGTAAACTCATGCCAGGGGATGTCTTTCTCAAGCGTT
Left flanking sequence: Indices 50547 -- 51046
ACGGGGCATAAAGCAAAGGTGTAACAAGCCTCTTTCCTCCGCTCGACTAATAAGTAGTATTGGCG
GGTGTACCAGATCGATCAGAGAAGTGCCAGCGGCTGATGTTGATGTAGCGATTCTGTTTCGAGTA
AAGTCGCTAAGGTTTTGAAGACATGGCATAGCCCAAAGCACCAAAGCGCAGGTAAGGTTCTTTCG
TTGTTGAGTACCCAATTTCCTCAGGAGAGCGGGTAATCGCTCTTTAGAATAGGCAGAGGGGGGAC
GAGACTACTGGTTCAACCAATCAATTGCAGGTGCAGGCTAGGGGGGAACATTCCTATTAGAAAGG
ACAGGAGTGGCACTGTGAACTTCGGGAATGCAGTAGAGGGGAGTTTGGGCAAGAGAATAGCTTTA
CTTCGAGTTTCAGGTGCAGGAGAGGGGGTTACTACTCGACTAATAAGTGTTGGATTGGAGGGGAA
CTTCTTTCTCTTCCCCAACTGGAAAAGTCTTGCCCAGGGAACAAA
Right flanking sequence: Indices 51135 -- 51634
TAGTTAGCCTCGCTACAATGCCAGGGGAAGAAGTAGCTACGGTAAACTCTAAACTATCTTTCTTC
TTTCACTCATAGCTATCTGACTGTGAGGATTCCCCCATGTCTACCCTGAAGGAAAGGTGAAAAGA
AGCGCCCTCTGCGAGCCGATGGACTGTAGCCTTAAGTTGGTCTCCTTCCTTCTATCTATAGGGCC
TAGCTCCCCCATCTTCCTGCTACCGCAGCTTGACTGAGCACGGAAGTCTCTGGATTTGATCCATG
CCCTACGCCAGCCAAGACGACTCTAACCACTATGATGCACCACCTAGATTTCACTCTCCTTTCTC
CTTCTCTAGCTACTGACTCTGTCTACTGATAGGTCTACTAAGGAATAGCCTACTGGATGCTTACT
TCTTCTATTACTAATATAATTTCTCTTATCGATTGATTTCAATCATAGCTACCCGCACTCTGTTT
CTAAATGGATCGAATTCCCCTAGCCGAGAATAACCTTCTAGTGGT
Found at i:52937 original size:18 final size:18
Alignment explanation
Indices: 52914--52949 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
52904 GAGAACCCGG
52914 CTTATGGCTATAGTGACT
1 CTTATGGCTATAGTGACT
*
52932 CTTATGGGTATAGTGACT
1 CTTATGGCTATAGTGACT
52950 GGTTTAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (18 bp):
CTTATGGCTATAGTGACT
Left flanking sequence: Indices 52414 -- 52913
ATGGACCTTAGCGCTTCCTCTCTATCCGGAAGTAGGGAATCCTTGCATATCCCGTTTTGAGCCGT
AGTATATTAGTTCTATATGCCATCGCCGATAAAGTGGAATCCACTATTCCCTGCTGCCTGCCAGG
TCATTCAATCTCTCTAACTCCCCGACTCAGAAAGCTTCTGCCTACACCTTCCTGCGCCCTCTATC
TAAATCATCTGCAATGGCTCCGTATTTCTTGCTACGAGCTTAACGGTCGCTACGAGACTGTGGGT
CTCTTTCTTAGTTATATGGTTAAGGCTCTTTCCCCTTGTCAAGGTTTTGATCTTAGAACCAAGCA
TAGAAATTCTCGATTAACTTGGTGGGTGACTTACTTTCCTCAACTAATGACATAGTCAAGTAGTA
TGGTTCGGTTGCTACGAACGCTACACCTGCTCTGCGTGGTCTCCTATGAATGAAGCATTGAATAA
GGGCTTCTCTCTCTCCTTGTAGCTGTTCATGGTTTGAGAACCCGG
Right flanking sequence: Indices 52950 -- 53449
GGTTTAGCTGCAAGCCAAGACAGAGACAGGAGTTTATTCACCTTCACCACTGACCGATTAGGAAG
AAATGCTTCTCCTCCAACAACTGTTTACCCAAAGCTAGACTTGCAGTGAGTCGAGTCTTCCGATC
ACCTGAGAGTGCCTTCACATCATAAGAAAAGCATAGGTATTAGTGGCTAGTCTAGCTACAAGGAA
GAGGTTTTCAAGTCAAGGGTTTCACTGCACCTTCGGTGAATCCTTGCTTCCACTCGGTTGGACCT
CTCTAAGGAGAGCTCCTTCCCTCACTCACTTGGCCAAGTCTATAAGCACAGGTAGAATGACTAGT
CTAGCTACAAGAAGGAGAAGACTAGTAGTTGCCATAAACAGCCAAGTCTTAGCAGCCAGAGCAGG
GAATTAGTTAACCGATTAGCTACAAGAGCCGTAAGCAAAGGAATAGCTACCACTTCTTAACAGTC
CCTCCATTCCTGACTTAGGCATGAGATAAGGGCCTCCCTCTCCTA
Found at i:56524 original size:17 final size:17
Alignment explanation
Indices: 56504--56538 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
56494 TAGTCACGCA
56504 CATACGTTTTCTTGCTG
1 CATACGTTTTCTTGCTG
56521 CATACGTTTTCTTGCTG
1 CATACGTTTTCTTGCTG
56538 C
1 C
56539 CCGGCGCGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (17 bp):
CATACGTTTTCTTGCTG
Left flanking sequence: Indices 56004 -- 56503
TTCTATATGATAATACTTAGATAGAGTACTCATGTACGCGGGTTGTTAGTGAGCTGCAGAGCCTT
AGTATCTTAATGCAAGTCGAAGTTGGCGCTCCATGCTTTCGTAAAAGCTTCTAGCTTCTTTTGGC
CAAGTACTGTTTAGATTGAAGGAGAGTCAGATTCTTTATTATCACTCTTCTCATAGCTATTGTCC
GGACATAGCGCCCTTAACCCCGACCTGAGGGAGGCGTCGGAATGCAGCAAGTGAGACTCCTCGCA
GGAGTCGACCGATAAGGGCTTGAGCTAAGTAGGAGAAAGAGCGAGTCCGTAATAAGAGATCTTTG
CTTTGAGCGAGTCCTTAATAAGAGATCTCAAAAGCGACAGAAAGATAGTGAAAAGCATGAACGAA
CCCAACAAGCAACTCAACAAGCAACGGTAGAGCGCCCTAGCGCGAAAGCCGTTGCGCAACAAGCA
ACGGTTTCAAGCCTAGCGCGAAAGCCGTTGTGCGTTAGTCACGCA
Right flanking sequence: Indices 56539 -- 57038
CCGGCGCGCGAAAGCCGTTTTCTTGCTGGATTAGACTTATTGAGTGAGAAAGCTAATGAAATGAA
AAGACTCTTTCAATCGGGAAAGGATAGATCTAACAGAAGGCTAGGCTAACCACTATCAAGGCAGG
AAAGAGACATTCGCATACTAGCTATCACAAACTAGAAGACATTCGCATACTAGCTATCACTGGAG
ATGACCTAAGTTCGTTAAGCCACATACTAACACTAAGATCTATCTCTTATCCTGCCTTCCCTAGC
ATCCATATTCAGTTAGCTACTTCCCTCAGGAGAGAGACATTCCATCCGGTGTCCAGAGCTTATAC
GGGTATAGAGATTGGTTGCAGTGCTCCAAACCGGTAGTCGCTTTCTTTTCTTCCTCGCTTACGCG
ATCAGAGAACCGATCCTCATCGGCTTGCTTGCCTTTCTTTTGTGCTCTAGCGTACCTCCTTCGAA
GTGAATGACCAACCTAGCTCTCGTGTATGGAATGAGAATATGGCC
Found at i:60058 original size:39 final size:39
Alignment explanation
Indices: 60015--60092 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
60005 AGAACGCTTG
*
60015 CTATCCGCTGAG-TGAGCTACATCTTCCTATCCGAACTAC
1 CTATCCGCTGAGTTCA-CTACATCTTCCTATCCGAACTAC
* *
60054 CTATCCGGTGAGTTCACTACTTCTTCCTATCCGAACTAC
1 CTATCCGCTGAGTTCACTACATCTTCCTATCCGAACTAC
60093 TTCTTCTGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 33 0.94
40 2 0.06
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (39 bp):
CTATCCGCTGAGTTCACTACATCTTCCTATCCGAACTAC
Left flanking sequence: Indices 59515 -- 60014
AACAGTAGAAAATAAAGCGACAGCATCTTATTCAGTGATAGCATCCGATCCGGGTTTAGCAACCG
TTATTGGACCGACTTACTTTTCTTTATTTTGTTTTAAGAAAGAAATGAAATACCAGTTCCACATC
CTTCCTATTCTAGGATCCCCGTTCTATTCTCTAGGCCAAGATTCGCTTTTCCAGGATCACTTTTA
TAGGCAAGACTGTTCTCCCCGCTATCCAGGAACAACAAAAACAGAGGTCTCTATGCCAAAGGTAC
TGTCTGGTTCTAGGTTTTGGGTGGTACCAATTGGTCTGATTCAGCACCAGCTGCTGAAGAGGAGA
CGGCTGATGGATAAAGGGACATCCAATTCTTCAGTGAAGCAGCATATATTGATCTCCTTTTCAAG
ATAGTCACAAAGAAAGAAGGGATATGGGAGAATCTTTCTACTCCCTTTCTTTACCTAGACCGTTC
TCCTCTCTCACTCACTTATATAATAGCTATTAGAGAGAACGCTTG
Right flanking sequence: Indices 60093 -- 60592
TTCTTCTGCAGCGAAGGCCTGTCATCGAATTCTTCAAACCTGGAGCATGTCGATCCTGAATGAAA
CTAAACCATGATTGATCCTACTATCAATCCGTCATATAGAGGCATAACTCCGGCTCTCTCTACGG
GTGGAGGGAGGGGCATCGTGAGACCTTGCACCCCAGGCCGGGAAGGAGGGGCAACAGCCTTGTCA
AGGCGCGGGTCAAGCCAACTCAAAGTTCAGCGATTTATACCGATCAAGAACAGAGCGCGGCTAAG
TCCTACCACTATTATTGCTTAAGTAAGCGCATTCATCCACATCCACAACAGAATCCACTCACTAA
ACTAAAGTCGAATAAAGTCCGTACGCTTGAATGAAGCCCTACCCCTACGCTTGAATGAACTCCTG
AAACATCCACTTCAATTGATTCTACTTCATCTCCCCCAGGCACCCCTTTCTCTCCTTACCAGCCT
GGACAAGATGGATGGGATGAAGGATTGCGGGGACAAAGCAAGCCA
Found at i:73652 original size:20 final size:20
Alignment explanation
Indices: 73627--73667 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
73617 GGCTAGGCAG
*
73627 TGCAACCCGAAAGGTGAGCC
1 TGCAACCCGAAAAGTGAGCC
*
73647 TGCAACCTGAAAAGTGAGCC
1 TGCAACCCGAAAAGTGAGCC
73667 T
1 T
73668 CTCATCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (20 bp):
TGCAACCCGAAAAGTGAGCC
Left flanking sequence: Indices 73127 -- 73626
TTTCCTTAGGTTAAGTGTTACATAGAACATTAGCTCAACTCCAAGCCTTTCCCTCCTTTTTCTTT
CCAAGCAATCAATGCGGCTAAGCGAACTAGGTAACCGGGGGGGCCCGCCCGACTTCCCTGGGTCG
AGAGGTCAGTCAAACCCTGATCCGGCTGCTCCGGTTGAGCCAATCGAGAGAATGGCCTCAGCTGG
CCTAATAACTGGAAAAGAACTTCCTTGCGTTTAATCAGTCGGTTTCGGCCCTGCCGAACCAAAGG
CTTTGCCTGGCATTTCCCAGTTCTCTCAAAACAAACAACATAAGAAGGATAGGTTGTTACCCCTT
TGCAATAGCGAAGAACTTACTTCGCTTCGTTGAAATGAGCGAATCGAGGGCTCTGGCTCCAGTGT
CCATCTGTGAGGAAAGACCACAACAGCCGAGTATGGTGCCGATGCTTGCAGCTGTCCCCTTGTGA
ACCGGCCATAATCAAGATATTTGCTGGTGTAGAGGGGCTAGGCAG
Right flanking sequence: Indices 73668 -- 74167
CTCATCATTTCATTTGTTCTCACCCTCGTGCCTAAAGTTCCGTTGCGGGAACAAGGTCACTGGAT
GAAGGACCGTTTGAAGTGTTGAGGGAGGAGACTCAACAATATATCCTGGCATTGAGCGTGACGGC
GTCTGTTCTGAACGGGATTTTAAGCGAATTGGACCTTCGTTTCGCTTTCCCAGAGTGAAGCCTCT
CGCTTGAGTTCTTTAGAGGGAACGGTTTAAAGCCGGAACGGAAGCATTCTTGTTGTTCCTTTCTC
ACGAATCTTTTGTGGCCAGGGGGTAGTTTGTGGGCTAGGAGAAAAAAAAACATAGCGCTTTTGAG
CCCTGCCTCAAAGAGGCGGGGCTACTTCCAGACACTAACTAACTAAGTAGTTATTAACTCGGCTC
CGGGGTTAAAGAAATGAATTCTTCCCAACCAAGCAAAAGGCTTGTTCTAGGACCAGAGGCAAAGG
AGGTAACCGCTGATCCGTGGAAGAAGGCTTACGAATCACAGGCTG
Found at i:84275 original size:23 final size:23
Alignment explanation
Indices: 84249--84318 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
84239 TATGCGTGTG
84249 AAGCAAGAAAACGCCCTATATAT
1 AAGCAAGAAAACGCCCTATATAT
84272 AAGCAAGAAAACGCCCTATATAT
1 AAGCAAGAAAACGCCCTATATAT
84295 AAGCAAGAAAACGCCCTATATAT
1 AAGCAAGAAAACGCCCTATATAT
84318 A
1 A
84319 TAAAGGGCTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.17
Consensus pattern (23 bp):
AAGCAAGAAAACGCCCTATATAT
Left flanking sequence: Indices 83749 -- 84248
GGTGCCTTATCTTCTTTCTACCCGACCACGGTCTTACCTCACGTTGCTCCTGCTTGCTTTCCCAG
CGGATATTGATTGAAGCTTAATGTTACAAAACTACTACAAGTCCTTGCCAACCACTCTTGATTGA
AGAAAGAACCCCTGGGACATCGTCTTGCTCAAATTCATGGGTCCGGTAAACAAGGGGCGTATTGC
TCTCATTGGTCCGGTACTTGATGTAGTTCCAATTGGTGCTTTGATACATACGCGACCTCACCTAG
CCTCGTCTCTCTGGCCTATCCTAACCTCACTGACTCAGAAGCAGTAGTTCCACGCCGGTAGTGCG
TAGCTACAAGGTAAGACAAAATCAACAATTGAGAACAGGAACCGCGCCATATAGAAGATACCCTT
TTTCTTAACTACTATAGGCAGGCTCTTTGAGACCGGGGAACGAACAAGAAAGCATACTATTAGCT
CCGTTAGCTCAGGCCCCTCACCCAGCAAGAAAACGTATGCGTGTG
Right flanking sequence: Indices 84319 -- 84818
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCTAACGCACCTTACGTTTATTGAATTGGGGCTTTCGCGCTAGGCAGCAAGAAAACGCCC
TATATATATAAAGGCGTTAGCACCTTACGTTTATTGAATTGGGGCTTTCGCGCGTTAGCGCTCAT
CCGTTGCTTGTTGGTAGTACGCTTATTAGGAGACAGAGCATAGAGCATTGCGGACTTGCTAGCTA
ATGAGTAGCTAACAAGAGTCAGATAAAGCATGGAAAGAAGAGGTGTACAGCTCTGCTACGGGAAT
GAATGATTCAGATATAGGCTATAGGCACTTGAAGGGGAAGTAGACTCGGGACAGAGATGAGGGTG
GTGGTTATGAAGCCTACCCACTAGTGAGCATTAGAGAGAAGAAAGAGAAGGAAGTCTGTCTAAGT
CCTACCCTTACTATCGTATCTGTCAAGAAGCACATCTTACAAAGG
Found at i:103565 original size:23 final size:23
Alignment explanation
Indices: 103535--103580 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
103525 ACCGGCGCTT
103535 ATTGCTTACTATAAGGCTTTTGC
1 ATTGCTTACTATAAGGCTTTTGC
103558 ATTGCTTACTATAAGGCTTTTGC
1 ATTGCTTACTATAAGGCTTTTGC
103581 GTCCCCCCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.43
Consensus pattern (23 bp):
ATTGCTTACTATAAGGCTTTTGC
Left flanking sequence: Indices 103035 -- 103534
CCAAATAATCCAAAGGCAGGATCCAAGACCTCGACAGAAGGCCCCTGAGCTTTGTTCTAAGCGCT
GAAGAAAGGCCCGACTAGAGAAGAATGGACAGCCGCCGCAAGACGAAAGATTGGATCGATGACCG
CCACACGAATGATGCCGTGGCCTCTAGCGCCAGTTTAGGACCCCTTGTGATAGATTGGCTCACCA
TAGAAAGCATTTGACCGATTTGAAGGAAGAACCCCTGAGACTATTCAATGTCCTTCTTTTCGGCT
GGAAAGAAAGAGAAGCTGCTCTCCTGCTGCCTTGTTGAAGAAAGGAAGCGAACAACCACTCAATT
TCTTTTAAATAGATTCGCTCATCAAGCTTCCAATGCAGTCTTATCTTCTATGCGATATATGCGTT
CAGTTGAAGTTCTTCGCCTTGGTCTCCTTGCTTGCTTGGCTTGTTTGCAAGATTTCTTTCTTTCC
TTCATCACGCCCTAGCCTTTAGCCCGATGCCTTCCACCGGCGCTT
Right flanking sequence: Indices 103581 -- 104080
GTCCCCCCTCTTCTTTCTTTTATAGTATACCCCGGGTTTCTTATTAATGAATGGGTGTAAAAGGG
AAGAGTGACTACCCCTTTCGATGCTCTTTCTATCTTTTTTATTTCTATTCTTTTGTAAAACAACT
GGCTCGCTAGGCCCCTTCTCGCTAAGCGCTGGCTCAACGTAATTCAAGTAGGAATCTCCTAAAGT
ACCTTCCGCCAGGTATGTTGGCGACACCGCCTAGCTCTAGCTAGGGCTTTTCTGCCTTTCCGCCC
TGCCCACTGCTCTTTCAACTCATCCTTCCCATCTGCCCCAATCTCCCATCCGTCATGTTCTTCTT
GCCCTATCTGGTCTGGCTACTGGCCATGTTCTTGATCTTGCTCTTATGTCTCTATCAGGTGAACT
GCCATTGGTTTCTGACAATTACTTCACACCATCAGCCCCGCCGCCTTAACGGAACTCGCTTAAGA
TACTACTGAATGAGAAACCAGGGCTATTTGAAGCGATACGAAAAG
Found at i:112712 original size:6 final size:6
Alignment explanation
Indices: 112701--112758 Score: 52
Period size: 6 Copynumber: 10.0 Consensus size: 6
112691 AATTGTCTAA
* *
112701 TTTAAT TTTAAT ATTTAAT TCTAA- TTTAA- -TTAAT TCTAA- TTTAAT
1 TTTAAT TTTAAT -TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
112746 TTTAAT ATTTAAT
1 TTTAAT -TTTAAT
112759 AATATATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
4 4 0.09
5 8 0.19
6 19 0.44
7 12 0.28
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (6 bp):
TTTAAT
Left flanking sequence: Indices 112201 -- 112700
GGTAGAGGGGCACATCCAATCCTCGTTTGTCCATTAGTTCCCATCTCTTCTCTTCAACGCGGGGT
AGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCTGTCTCCGCA
ATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAATGTTAACTAGCCATTA
ATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGATAGAACCACTACATTA
TCGTAGTAAACTCTACCGAATCATTTATCCTATTCCATTAATTCACTAATTCACTATAGGCGGAT
AGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACCATATCCGCG
TTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACATATATGATATTCATGTCTGGATCATTAT
TGTGCAGAGACGGATACTATCTTCAGAACGATTCCAATTGTCTAA
Right flanking sequence: Indices 112759 -- 113258
AATATATATTTATAATATATATTTAATATAATATATATTTAATAATATTAATATATAATATATAT
ATATAAGATATATAATAGATTCTATGTTATTATAACATATAACATAGAATATAACAATATAATTT
TTTGTTTATTCAAGAAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTTCGGGATT
CATTTTAATCTTATATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGGGGGTCCT
TTTTTTTTATCTGGAAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCTACTAGAA
AGACTAATCCAATCCATAATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCAACCGTCA
GAAGAAGCAAATACAACGGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATGCAAAAAC
AGCCAATTGGAAAGCAATAGTCATACTTCTAATCCTCCAAGCTAC
Found at i:112735 original size:15 final size:15
Alignment explanation
Indices: 112715--112746 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
112705 ATTTTAATAT
112715 TTAATTCTAATTTAA
1 TTAATTCTAATTTAA
112730 TTAATTCTAATTTAA
1 TTAATTCTAATTTAA
112745 TT
1 TT
112747 TTAATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATTCTAATTTAA
Left flanking sequence: Indices 112215 -- 112714
TCCAATCCTCGTTTGTCCATTAGTTCCCATCTCTTCTCTTCAACGCGGGGTAGAGCAGCTTGGTA
GCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCTGTCTCCGCAATATCGATCGTTTT
TTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAATGTTAACTAGCCATTAATTACTATTTCTCT
TTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGATAGAACCACTACATTATCGTAGTAAACTCT
ACCGAATCATTTATCCTATTCCATTAATTCACTAATTCACTATAGGCGGATAGCGGGAATCGAAC
CCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACCATATCCGCGTTTTTTCGTTCCTG
ATAAGCCCGCATATGTTTCCACATATATGATATTCATGTCTGGATCATTATTGTGCAGAGACGGA
TACTATCTTCAGAACGATTCCAATTGTCTAATTTAATTTTAATAT
Right flanking sequence: Indices 112747 -- 113246
TTAATATTTAATAATATATATTTATAATATATATTTAATATAATATATATTTAATAATATTAATA
TATAATATATATATATAAGATATATAATAGATTCTATGTTATTATAACATATAACATAGAATATA
ACAATATAATTTTTTGTTTATTCAAGAAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTC
CTTTTCGGGATTCATTTTAATCTTATATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATT
TTAGGGGGTCCTTTTTTTTTATCTGGAAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGA
TAGCTACTAGAAAGACTAATCCAATCCATAATGATGTACCGGAAAATACAACATTTTTGTTACTT
GACCAACCGTCAGAAGAAGCAAATACAACGGGTACACTAATCAATAAGATTGATGAAGTAGCAAT
TAATGCAAAAACAGCCAATTGGAAAGCAATAGTCATACTTCTAAT
Found at i:112751 original size:11 final size:11
Alignment explanation
Indices: 112701--112751 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
112691 AATTGTCTAA
112701 TTTAATTTTAAT
1 TTTAA-TTTAAT
112713 ATTTAATTCTAA-
1 -TTTAATT-TAAT
112725 TTTAA-TTAAT
1 TTTAATTTAAT
*
112735 TCTAATTTAAT
1 TTTAATTTAAT
112746 TTTAAT
1 TTTAAT
112752 ATTTAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 3 0.09
10 5 0.15
11 15 0.45
12 2 0.06
13 8 0.24
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTAATTTAAT
Left flanking sequence: Indices 112201 -- 112700
GGTAGAGGGGCACATCCAATCCTCGTTTGTCCATTAGTTCCCATCTCTTCTCTTCAACGCGGGGT
AGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCTGTCTCCGCA
ATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAATGTTAACTAGCCATTA
ATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGATAGAACCACTACATTA
TCGTAGTAAACTCTACCGAATCATTTATCCTATTCCATTAATTCACTAATTCACTATAGGCGGAT
AGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACCATATCCGCG
TTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACATATATGATATTCATGTCTGGATCATTAT
TGTGCAGAGACGGATACTATCTTCAGAACGATTCCAATTGTCTAA
Right flanking sequence: Indices 112752 -- 113251
ATTTAATAATATATATTTATAATATATATTTAATATAATATATATTTAATAATATTAATATATAA
TATATATATATAAGATATATAATAGATTCTATGTTATTATAACATATAACATAGAATATAACAAT
ATAATTTTTTGTTTATTCAAGAAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTT
CGGGATTCATTTTAATCTTATATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGG
GGGTCCTTTTTTTTTATCTGGAAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCT
ACTAGAAAGACTAATCCAATCCATAATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCA
ACCGTCAGAAGAAGCAAATACAACGGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATG
CAAAAACAGCCAATTGGAAAGCAATAGTCATACTTCTAATCCTCC
Found at i:112767 original size:2 final size:2
Alignment explanation
Indices: 112760--112837 Score: 57
Period size: 2 Copynumber: 43.5 Consensus size: 2
112750 ATATTTAATA
* * *
112760 AT AT AT AT TT AT A- AT AT AT AT TT A- AT AT A- AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
112799 A- AT A- AT AT -T A- AT AT AT A- AT AT AT AT AT AT A- AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
112835 AT A
1 AT A
112838 ATAGATTCTA
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
1 9 0.15
2 51 0.85
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 112260 -- 112759
CGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCTGTC
TCCGCAATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAATGTTAACTAG
CCATTAATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGATAGAACCACT
ACATTATCGTAGTAAACTCTACCGAATCATTTATCCTATTCCATTAATTCACTAATTCACTATAG
GCGGATAGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACCATA
TCCGCGTTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACATATATGATATTCATGTCTGGAT
CATTATTGTGCAGAGACGGATACTATCTTCAGAACGATTCCAATTGTCTAATTTAATTTTAATAT
TTAATTCTAATTTAATTAATTCTAATTTAATTTTAATATTTAATA
Right flanking sequence: Indices 112838 -- 113337
ATAGATTCTATGTTATTATAACATATAACATAGAATATAACAATATAATTTTTTGTTTATTCAAG
AAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTTCGGGATTCATTTTAATCTTAT
ATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGGGGGTCCTTTTTTTTTATCTGG
AAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCTACTAGAAAGACTAATCCAATC
CATAATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCAACCGTCAGAAGAAGCAAATAC
AACGGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAG
CAATAGTCATACTTCTAATCCTCCAAGCTACCAATAAATAAACTATACCATTTGATCCCTCTCTC
ATCAAAAAAATTGTAATAAAATGCATCATAGAGGGATTTGACCAT
Found at i:112769 original size:27 final size:27
Alignment explanation
Indices: 112739--112827 Score: 81
Period size: 29 Copynumber: 3.1 Consensus size: 27
112729 ATTAATTCTA
112739 ATTTAATTTTAATATTTAATAATATAT
1 ATTTAATTTTAATATTTAATAATATAT
**
112766 ATTT-ATAATATATATTTAATATAATATAT
1 ATTTAATTTTA-ATATTT-A-ATAATATAT
*
112795 ATTTAATAATATTAATATATAATATATATAT
1 ATTTAAT--T-TTAATATTTAATA-ATATAT
112826 AT
1 AT
112828 AAGATATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
26 4 0.08
27 10 0.20
28 1 0.02
29 13 0.27
30 5 0.10
31 9 0.18
32 5 0.10
33 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
ATTTAATTTTAATATTTAATAATATAT
Left flanking sequence: Indices 112239 -- 112738
TCCCATCTCTTCTCTTCAACGCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAG
GTCACGGGTTCAAATCCTGTCTCCGCAATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCT
GACTCTGTTAATGTTAACTAGCCATTAATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTA
GGAAGAGAAGATAGAACCACTACATTATCGTAGTAAACTCTACCGAATCATTTATCCTATTCCAT
TAATTCACTAATTCACTATAGGCGGATAGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAG
AAATTTTACCATTCGACCATATCCGCGTTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACAT
ATATGATATTCATGTCTGGATCATTATTGTGCAGAGACGGATACTATCTTCAGAACGATTCCAAT
TGTCTAATTTAATTTTAATATTTAATTCTAATTTAATTAATTCTA
Right flanking sequence: Indices 112828 -- 113327
AAGATATATAATAGATTCTATGTTATTATAACATATAACATAGAATATAACAATATAATTTTTTG
TTTATTCAAGAAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTTCGGGATTCATT
TTAATCTTATATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGGGGGTCCTTTTT
TTTTATCTGGAAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCTACTAGAAAGAC
TAATCCAATCCATAATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCAACCGTCAGAAG
AAGCAAATACAACGGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATGCAAAAACAGCC
AATTGGAAAGCAATAGTCATACTTCTAATCCTCCAAGCTACCAATAAATAAACTATACCATTTGA
TCCCTCTCTCATCAAAAAAATTGTAATAAAATGCATCATAGAGGG
Found at i:112773 original size:13 final size:13
Alignment explanation
Indices: 112750--112836 Score: 86
Period size: 13 Copynumber: 6.3 Consensus size: 13
112740 TTTAATTTTA
112750 ATATTTAATAATAT
1 ATATTT-ATAATAT
112764 ATATTTATAATAT
1 ATATTTATAATAT
112777 ATATTTAATATAATAT
1 ATA-TT--TATAATAT
112793 ATATTTAATAATAT
1 ATATTT-ATAATAT
*
112807 -TAATATATAATAT
1 AT-ATTTATAATAT
* *
112820 ATATATATAAGAT
1 ATATTTATAATAT
112833 ATAT
1 ATAT
112837 AATAGATTCT
Statistics
Matches: 65, Mismatches: 2, Indels: 13
0.81 0.03 0.16
Matches are distributed among these distances:
13 33 0.51
14 19 0.29
15 2 0.03
16 11 0.17
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (13 bp):
ATATTTATAATAT
Left flanking sequence: Indices 112250 -- 112749
CTCTTCAACGCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTC
AAATCCTGTCTCCGCAATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAA
TGTTAACTAGCCATTAATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGA
TAGAACCACTACATTATCGTAGTAAACTCTACCGAATCATTTATCCTATTCCATTAATTCACTAA
TTCACTATAGGCGGATAGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCA
TTCGACCATATCCGCGTTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACATATATGATATTC
ATGTCTGGATCATTATTGTGCAGAGACGGATACTATCTTCAGAACGATTCCAATTGTCTAATTTA
ATTTTAATATTTAATTCTAATTTAATTAATTCTAATTTAATTTTA
Right flanking sequence: Indices 112837 -- 113336
AATAGATTCTATGTTATTATAACATATAACATAGAATATAACAATATAATTTTTTGTTTATTCAA
GAAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTTCGGGATTCATTTTAATCTTA
TATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGGGGGTCCTTTTTTTTTATCTG
GAAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCTACTAGAAAGACTAATCCAAT
CCATAATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCAACCGTCAGAAGAAGCAAATA
CAACGGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAA
GCAATAGTCATACTTCTAATCCTCCAAGCTACCAATAAATAAACTATACCATTTGATCCCTCTCT
CATCAAAAAAATTGTAATAAAATGCATCATAGAGGGATTTGACCA
Found at i:112774 original size:16 final size:16
Alignment explanation
Indices: 112755--112827 Score: 68
Period size: 14 Copynumber: 4.8 Consensus size: 16
112745 TTTTAATATT
112755 TAATAATATATATTTA
1 TAATAATATATATTTA
*
112771 TAAT-ATATAT-TTAA
1 TAATAATATATATTTA
112785 T-ATAATATATA-TT-
1 TAATAATATATATTTA
*
112798 TAATAATAT-TAATATA
1 TAATAATATAT-ATTTA
112814 TAATATATATATAT
1 TAATA-ATATATAT
112828 AAGATATATA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
13 4 0.09
14 19 0.41
15 7 0.15
16 9 0.20
17 6 0.13
18 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATAATATATATTTA
Left flanking sequence: Indices 112255 -- 112754
CAACGCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC
CTGTCTCCGCAATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAATGTTA
ACTAGCCATTAATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGATAGAA
CCACTACATTATCGTAGTAAACTCTACCGAATCATTTATCCTATTCCATTAATTCACTAATTCAC
TATAGGCGGATAGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGA
CCATATCCGCGTTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACATATATGATATTCATGTC
TGGATCATTATTGTGCAGAGACGGATACTATCTTCAGAACGATTCCAATTGTCTAATTTAATTTT
AATATTTAATTCTAATTTAATTAATTCTAATTTAATTTTAATATT
Right flanking sequence: Indices 112828 -- 113327
AAGATATATAATAGATTCTATGTTATTATAACATATAACATAGAATATAACAATATAATTTTTTG
TTTATTCAAGAAGTTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTTCGGGATTCATT
TTAATCTTATATTATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGGGGGTCCTTTTT
TTTTATCTGGAAAATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCTACTAGAAAGAC
TAATCCAATCCATAATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCAACCGTCAGAAG
AAGCAAATACAACGGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATGCAAAAACAGCC
AATTGGAAAGCAATAGTCATACTTCTAATCCTCCAAGCTACCAATAAATAAACTATACCATTTGA
TCCCTCTCTCATCAAAAAAATTGTAATAAAATGCATCATAGAGGG
Found at i:112839 original size:29 final size:28
Alignment explanation
Indices: 112757--112840 Score: 93
Period size: 27 Copynumber: 3.0 Consensus size: 28
112747 TTAATATTTA
*
112757 ATAATATATATTTATAATATATAT-TTAAT
1 ATAATATATA-TTATAATATATATAAT-AT
112786 ATAATATATATT-TAATA-ATATTAATAT
1 ATAATATATATTATAATATATA-TAATAT
*
112813 ATAATATATATATATAAGATATATAATA
1 ATAATATATAT-TATAATATATATAATA
112841 GATTCTATGT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
26 3 0.06
27 19 0.40
28 4 0.08
29 19 0.40
30 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (28 bp):
ATAATATATATTATAATATATATAATAT
Left flanking sequence: Indices 112257 -- 112756
ACGCGGGGTAGAGCAGCTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATCCT
GTCTCCGCAATATCGATCGTTTTTTTGTCAAAAAAAAATGTAGGTCTGACTCTGTTAATGTTAAC
TAGCCATTAATTACTATTTCTCTTTTTGGATCGGAGGAAAAGAAGTAGGAAGAGAAGATAGAACC
ACTACATTATCGTAGTAAACTCTACCGAATCATTTATCCTATTCCATTAATTCACTAATTCACTA
TAGGCGGATAGCGGGAATCGAACCCGCATCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACC
ATATCCGCGTTTTTTCGTTCCTGATAAGCCCGCATATGTTTCCACATATATGATATTCATGTCTG
GATCATTATTGTGCAGAGACGGATACTATCTTCAGAACGATTCCAATTGTCTAATTTAATTTTAA
TATTTAATTCTAATTTAATTAATTCTAATTTAATTTTAATATTTA
Right flanking sequence: Indices 112841 -- 113340
GATTCTATGTTATTATAACATATAACATAGAATATAACAATATAATTTTTTGTTTATTCAAGAAG
TTGGGCTTTGACCCCCCCAATTTTTTCTTTATTTTCCTTTTCGGGATTCATTTTAATCTTATATT
ATGGAATTTTAATGTGTCTCACAACCCGAAGGGATTTTAGGGGGTCCTTTTTTTTTATCTGGAAA
ATACTGAATTGGTTCAAGAGATGAGAGAATTAAGGATAGCTACTAGAAAGACTAATCCAATCCAT
AATGATGTACCGGAAAATACAACATTTTTGTTACTTGACCAACCGTCAGAAGAAGCAAATACAAC
GGGTACACTAATCAATAAGATTGATGAAGTAGCAATTAATGCAAAAACAGCCAATTGGAAAGCAA
TAGTCATACTTCTAATCCTCCAAGCTACCAATAAATAAACTATACCATTTGATCCCTCTCTCATC
AAAAAAATTGTAATAAAATGCATCATAGAGGGATTTGACCATGAA
Found at i:125342 original size:17 final size:17
Alignment explanation
Indices: 125320--125354 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
125310 CGCGCGCCGG
125320 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
125337 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
125354 G
1 G
125355 TGCGTGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 124820 -- 125319
GGCCATATTCTCATTCCATACACGAGAGCTAGGTTGGTCATTCACTTCGAAGGAGGTACGCTAGA
GCACAAAAGAAAGGCAAGCAAGCCGATGAGGATCGGTTCTCTGATCGCGTAAGCGAGGAAGAAAA
GAAAGCGACTACCGGTTTGGAGCACTGCAACCAATCTCTATACCCGTATAAGCTCTGGACACCGG
ATGGAATGTCTCTCTCCTGAGGGAAGTAGCTAACTGAATATGGATGCTAGGGAAGGCAGGATAAG
AGATAGATCTTAGTGTTAGTATGTGGCTTAACGAACTTAGGTCATCTCCAGTGATAGCTAGTATG
CGAATGTCTTCTAGTTTGTGATAGCTAGTATGCGAATGTCTCTTTCCTGCCTTGATAGTGGTTAG
CCTAGCCTTCTGTTAGATCTATCCTTTCCCGATTGAAAGAGTCTTTTCATTTCATTAGCTTTCTC
ACTCAATAAGTCTAATCCAGCAAGAAAACGGCTTTCGCGCGCCGG
Right flanking sequence: Indices 125355 -- 125854
TGCGTGACTAACGCACAACGGCTTTCGCGCTAGGCTTGAAACCGTTGCTTGTTGCGCAACGGCTT
TCGCGCTAGGGCGCTCTACCGTTGCTTGTTGAGTTGCTTGTTGGGTTCGTTCATGCTTTTCACTA
TCTTTCTGTCGCTTTTGAGATCTCTTATTAAGGACTCGCTCAAAGCAAAGATCTCTTATTACGGA
CTCGCTCTTTCTCCTACTTAGCTCAAGCCCTTATCGGTCGACTCCTGCGAGGAGTCTCACTTGCT
GCATTCCGACGCCTCCCTCAGGTCGGGGTTAAGGGCGCTATGTCCGGACAATAGCTATGAGAAGA
GTGATAATAAAGAATCTGACTCTCCTTCAATCTAAACAGTACTTGGCCAAAAGAAGCTAGAAGCT
TTTACGAAAGCATGGAGCGCCAACTTCGACTTGCATTAAGATACTAAGGCTCTGCAGCTCACTAA
CAACCCGCGTACATGAGTACTCTATCTAAGTATTATCATATAGAA
Found at i:127409 original size:20 final size:20
Alignment explanation
Indices: 127384--127423 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
127374 AACGATTTGA
127384 TTTAATTGATTGAACAAGGT
1 TTTAATTGATTGAACAAGGT
127404 TTTAATTGATTGAACAAGGT
1 TTTAATTGATTGAACAAGGT
127424 CTTGAAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (20 bp):
TTTAATTGATTGAACAAGGT
Left flanking sequence: Indices 126884 -- 127383
TTTCTTCTGAATCTCAATTACACGTTCAGGTTCTATTTGTGCAAACAATGTTTTATATCTTTCAT
ACACTTTAGGTATGGTGCAGGCTAGCGTATTCATGTTTACAGAAATATGGTGAGGTGTGACTTTC
TGCGTATTAAAGCCAAATTCGTCAGGATTGACTCTTACGTAGCACATATGGCGAGATTGTCTGGT
TAGATGTACCAGGCTATATAAGCATGCGTTCCTGGTAGTAGAACTCAAGAGACTAGACCTTTTAA
GAATGATAGTGGAATTATTCATTATGGATCTTTTTTCTTTATTTGAAATAGAGCTTTTTTCTCTA
TCTTGAAGCTTCTTTGTTGTTGATTAGGTCTTATCTCCTCTGTCCGTATCTCTCTGCCTGATTAC
ATCAACATCTACGGGTTGCAATCAGTTTAAGATCCGTCCAAATCAATTTGACTACTATCTTAGTA
TTGTAAGATAATATGGAGATAAGTCCGTCTTCATTAACGATTTGA
Right flanking sequence: Indices 127424 -- 127923
CTTGAAGTATGGCCACCAGCCCATTGCCCACTTTCATTCCAATCACTAAACAGGAAAGATCTCAC
ATTCAGAACTTCCAACCCAAGGGATTATCCAAGAATTTATATGTAACTACTCCATTTTCGCTGAG
ATGAAAGGTAGCGAAATAATCGGAGCGTAGAGAAGCATTATTTTCAGCATCAGCAGGTGTCAAAC
AACTCAAATCATAAGACAAATCAAGTATCTTAAGCAGGATTTAAAAATCCTTCGGATATTCCTCA
AGCGAATTAATGTCGTAGTGGAGTGATATCTCATTTGAAGGTATGGAAATGAATACCTCGTGACC
ACACCTTATATAGTTATGTTTTGGATACATCTTCATATATTCTGTATCTAACAATGTCAAGTAAA
AATCCAGTAGGAGTCCTGATATCATATCAGAGCGTGGGATAGAGATAGAACTGTGAACTTTTAGC
CTAATGTTTTCTCCATTTGAATCAAGCATCGGTAGGTCTATAAAT
Found at i:137515 original size:23 final size:23
Alignment explanation
Indices: 137489--137557 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
137479 AGTTGCGCCC
137489 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
137512 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
137535 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
137558 TAAAGGGCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.17
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 136989 -- 137488
AGAGAGCGATGTGCATGGACCAGGTGAGTAGGGATGCAGCTCCGTGGACCGCTCGTCGGGCCTGA
TAGGTGGTGGTATCACACCCTTCTCAAAGGAACCGTACGTGACACTCTCGCGTCATACGGCTCCG
TCCCGGAATCAGGACCTCCCCTTTCCTTTGACCAACGGGTCCTCGAACCCCTTGCATGGAGGTTC
CTTTTCATTCATTCATTGATTGATTCAAGGTAGCTTTAGCTTGCTTCCAAGTCCAAGCGCTAGCG
GTAGAAGCTAGTCGCCAGAAGCGAACTGGAGGGCCGGGAAGGAGGCCTTTTTTCTGGCGCGGAAG
CTACCGCAACTCAAAAAAAATGAATGAAGAAGGCATTAGCATTAGAAAGACTACAGAGGCATTAC
GGGCCGACTACAAGACTACGACTACAATACAAGTCATGAGCGATAGCGAAGCCAAGCCAACAAGC
AAGTCGCCAATTCGTTAGCTAACTATGAAATTGCGAGTTGCGCCC
Right flanking sequence: Indices 137558 -- 138057
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGCCGGGCAGCAAGAAAACGTA
TGCAGCAAGAAAACGTATGTGCGTGACTAACGCACAACGGCTTTCGCGCTAGGCTTGAAACCGTT
GCTTGTTGCGCAACGGCTTTCGCGCTAGGGCGCTCTACCGTTGCTTGTTGAGTTGCTTGTTGGCG
TTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCAGGAGTTGCTTGTTCTAAC
GAATGAATTGAATAGTGCCGGTTGCTGGAGCCTTTTTTTGTTTATGTCGAAAGCCCCACAACTAG
CTATCTTATAGCAGACAACTAACGCAAGCCTACTCAACAAATCTCATAAGTAAACGCATCGCAAC
TAATATGAATTCAAACTACTAGACTAGACTAGTAGTTGAGTGCTC
Found at i:137694 original size:17 final size:17
Alignment explanation
Indices: 137672--137706 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
137662 CGCGCGCCGG
137672 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
137689 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
137706 G
1 G
137707 TGCGTGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 137172 -- 137671
GCATGGAGGTTCCTTTTCATTCATTCATTGATTGATTCAAGGTAGCTTTAGCTTGCTTCCAAGTC
CAAGCGCTAGCGGTAGAAGCTAGTCGCCAGAAGCGAACTGGAGGGCCGGGAAGGAGGCCTTTTTT
CTGGCGCGGAAGCTACCGCAACTCAAAAAAAATGAATGAAGAAGGCATTAGCATTAGAAAGACTA
CAGAGGCATTACGGGCCGACTACAAGACTACGACTACAATACAAGTCATGAGCGATAGCGAAGCC
AAGCCAACAAGCAAGTCGCCAATTCGTTAGCTAACTATGAAATTGCGAGTTGCGCCCAGCAAGAA
AACGCCCTATATATAAGCAAGAAAACGCCCTATATATAAGCAAGAAAACGCCCTATATATATAAA
GGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTT
GGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGCCGG
Right flanking sequence: Indices 137707 -- 138206
TGCGTGACTAACGCACAACGGCTTTCGCGCTAGGCTTGAAACCGTTGCTTGTTGCGCAACGGCTT
TCGCGCTAGGGCGCTCTACCGTTGCTTGTTGAGTTGCTTGTTGGCGTTAGCACCTTACGTTTATT
GAATGGGGCTTTCGCGCGTTAGCGCTCAGGAGTTGCTTGTTCTAACGAATGAATTGAATAGTGCC
GGTTGCTGGAGCCTTTTTTTGTTTATGTCGAAAGCCCCACAACTAGCTATCTTATAGCAGACAAC
TAACGCAAGCCTACTCAACAAATCTCATAAGTAAACGCATCGCAACTAATATGAATTCAAACTAC
TAGACTAGACTAGTAGTTGAGTGCTCCTTGTTGTTCGGATCTTGACCGGGTCCGAGCTTCCCAAG
CTCTATGCTGTTGGGGAACTCCGCAAGGGTCTTACCACCTTCTTGATTGACTATATTTGAGTCTT
TGGGGTACTTTGGGATTATATTCCGCGCCGAGGATTTGTGCTTGT
Found at i:140542 original size:23 final size:23
Alignment explanation
Indices: 140512--140559 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
140502 ACACTACACC
140512 TAAGCAAGAAAACGCCCTATATA
1 TAAGCAAGAAAACGCCCTATATA
140535 TAAGCAAGAAAACGCCCTATATA
1 TAAGCAAGAAAACGCCCTATATA
140558 TA
1 TA
140560 TAAAGGCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.21, G:0.12, T:0.19
Consensus pattern (23 bp):
TAAGCAAGAAAACGCCCTATATA
Left flanking sequence: Indices 140012 -- 140511
ATAGGCAGAACTACTGTGAGCGGTCTAAACTTCGACCCTTATTTCTTTCTTCATATTGTAAAGGG
GAGCAAAGCCCGTTTTTTGCTCCCTTTATTGATAGATCAGGGGCCCTCCTGCCGTCGTTTCAGTG
ACTCATAGGGCTTCCCTCAGCTCAGACTGGTGTCGTCACCTCTCCCAGGACCGGAATGATTATCC
CTGCCCGATGGGTCTACATCCATCCCTGAATGTCGTCGGGTACTGTTCACTTCCCCGCCATTCTT
GTAACCGTCACCTGTAATCCGCGCAGGTGTGTCCGCACCCCCCTGAGTGGACGAGAAAGAAAGGA
TTTCTCGGAGCCCCTGCTTGCTTCAAAACGTAAGGGCGCTAGCTAGCCCCTAACAGTAAGGGGGC
CAGAACAACCCAGCTTAGTAGGCGCTTAAATGTTAGTTCCGTTCCGTCAAGTGCGCCAGGAGCAA
ACTACTTGAGTCTCATGTAGTGTAGGCAGCTGACTACACTACACC
Right flanking sequence: Indices 140560 -- 141059
TAAAGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTT
GTTGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTG
TTAAGTAAAGCAGCTTTCATTCTTTATAGTTCCGCGCCCTATTTATGACGCGCAGGTTCTAAAAG
ATCTCGCCTATAAACCAGAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGA
AGGGGAATGTTCCGCGTTCTCATCTCGGAGCTGACTCAACTTTCCCGTATGAGCATTCGGTACAT
GTATCAGTCCGTGGAAGAGTGAAAGGGTCACCACTACTGAGGATCTCCCCCCTAATCTTAGATAG
GTCGTCTGAGGGTTCGCCGCGGTTCATTGCTGTGCTTACACACTAGGCTACCCTTCTCCGAAAGC
TCCGCAGGACCACCTACCACTAGTCTTCGGCCGGAGGGGTTTATT
Found at i:140672 original size:64 final size:64
Alignment explanation
Indices: 140571--140691 Score: 242
Period size: 64 Copynumber: 1.9 Consensus size: 64
140561 AAAGGCGTTA
140571 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTGTTGGCTAAC
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTGTTGGCTAAC
140635 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTGTT
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTGTT
140692 AAGTAAAGCA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.13, C:0.25, G:0.26, T:0.36
Consensus pattern (64 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTGTTGGCTAAC
Left flanking sequence: Indices 140071 -- 140570
AAAGGGGAGCAAAGCCCGTTTTTTGCTCCCTTTATTGATAGATCAGGGGCCCTCCTGCCGTCGTT
TCAGTGACTCATAGGGCTTCCCTCAGCTCAGACTGGTGTCGTCACCTCTCCCAGGACCGGAATGA
TTATCCCTGCCCGATGGGTCTACATCCATCCCTGAATGTCGTCGGGTACTGTTCACTTCCCCGCC
ATTCTTGTAACCGTCACCTGTAATCCGCGCAGGTGTGTCCGCACCCCCCTGAGTGGACGAGAAAG
AAAGGATTTCTCGGAGCCCCTGCTTGCTTCAAAACGTAAGGGCGCTAGCTAGCCCCTAACAGTAA
GGGGGCCAGAACAACCCAGCTTAGTAGGCGCTTAAATGTTAGTTCCGTTCCGTCAAGTGCGCCAG
GAGCAAACTACTTGAGTCTCATGTAGTGTAGGCAGCTGACTACACTACACCTAAGCAAGAAAACG
CCCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGCGTTA
Right flanking sequence: Indices 140692 -- 141191
AAGTAAAGCAGCTTTCATTCTTTATAGTTCCGCGCCCTATTTATGACGCGCAGGTTCTAAAAGAT
CTCGCCTATAAACCAGAAATCGGGAGCCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAG
GGGAATGTTCCGCGTTCTCATCTCGGAGCTGACTCAACTTTCCCGTATGAGCATTCGGTACATGT
ATCAGTCCGTGGAAGAGTGAAAGGGTCACCACTACTGAGGATCTCCCCCCTAATCTTAGATAGGT
CGTCTGAGGGTTCGCCGCGGTTCATTGCTGTGCTTACACACTAGGCTACCCTTCTCCGAAAGCTC
CGCAGGACCACCTACCACTAGTCTTCGGCCGGAGGGGTTTATTGCACAAAAACGCCGGGACGCAG
GCTCCCGAAGAGGGAAGCCCAACGAATGTCAGATGCAAAGCCCCGCACCTCATTAAGATCATATT
GGCATACTCTCCCAAAAAAGAAAGAGCAGACCCCATTGAAGACGG
Found at i:144187 original size:64 final size:64
Alignment explanation
Indices: 144086--144206 Score: 201
Period size: 64 Copynumber: 1.9 Consensus size: 64
144076 AATTCGTTAG
*
144086 AACAAGCAACGGATGAGCGCGCTAGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCC
1 AACAAGCAACGGATGAGAGCGCTAGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCC
144150 AACAAGCAACGG-T-AGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGC
1 AACAAGCAACGGATGAGAGCGCT-A-GCGCGAAAGCCCCATTCAATAAACGTAAGGTGC
144207 GTTAGCCCTT
Statistics
Matches: 54, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
62 7 0.13
63 2 0.04
64 45 0.83
ACGTcount: A:0.36, C:0.27, G:0.25, T:0.12
Consensus pattern (64 bp):
AACAAGCAACGGATGAGAGCGCTAGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCC
Left flanking sequence: Indices 143586 -- 144085
GCGACAGAGCTAGGCATCAAAAGCGGGGGAAAGCGGGTAACTGTAACCATAGGCTTAGTTCTTTT
TTTTAGCCCCACCTAGCCTAGGTAGGCCTCACAAGAGGGAGCATTCCGAAGCATCGTTCGATGCC
CAACGACACCAATATAGAGATCACTTGACAGAATAAGAGCGGGAGACGGACTTCCACTATTTATA
AGGGCGACAGGAGTCAACCCTGTAGTATTGGTTTAGCGATTATGTCAAGTCTCCCCAGCTGCTCA
CTTGGCTTCGGATGATCAGACCTGTCTTGGACGTGGAACCCCAGAATTGAGGACTTGTGGAGACG
CGGAATATCAGACTTAGGCTCAAACGGAAGCCCCGGGAGCACAGGAAAATAAGGAACTGTATATA
TAACCACTGGGATCCGGCACTGCCACTGGGACGGTCTATTGCCCACCCCTCTCTCTTTGGCGGTT
ACAGTATTCTATTCTTTCTCTGATCCAGCAAGAGCAATTCGTTAG
Right flanking sequence: Indices 144207 -- 144706
GTTAGCCCTTTATATATATAGGGCGTTTTCTTGCTTATATATAGGGCGTTTTCTTGCTGGCCTCA
ACTCGCAATGAAATAGTTCTTGCGGGTTGAAGCTAACGAATTGGCGACTTGCTTGTTGGGTTGCT
TGCATGGGTTCTTGAACTGGACAACCTCACTCTCGCTCGATGCTTTGAATAGCGTGCGTAGCTTC
GTACCCGAACAATAATCGGATCCGGGCCTTGCTATTGTTCGGCCTGAAACAACTGTATGTAGTAG
AGAGAGAGAGGGGCTTTTTGCGAAAGGCTATCAACGTATACGTATATAGATATAGTGAGTGTGCG
TGCAGGGTGTAGGTGTACCACTTACGAGAAAGAACCCCAAGTAAGTCAAGTAGTTAACCAAACAC
AAGTAAGTAGTTCGTCAGTCCTTCCTCCGACGCCTCCCGTTCATTCTTCTGCATTTCATCATGTT
TGTTGTGTTGTTCCGTTCATAGGTCCCAAGTCTGTCTCCTCCCTC
Found at i:144246 original size:23 final size:23
Alignment explanation
Indices: 144219--144264 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
144209 TAGCCCTTTA
144219 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
144242 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
144265 GGCCTCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 143719 -- 144218
CGACACCAATATAGAGATCACTTGACAGAATAAGAGCGGGAGACGGACTTCCACTATTTATAAGG
GCGACAGGAGTCAACCCTGTAGTATTGGTTTAGCGATTATGTCAAGTCTCCCCAGCTGCTCACTT
GGCTTCGGATGATCAGACCTGTCTTGGACGTGGAACCCCAGAATTGAGGACTTGTGGAGACGCGG
AATATCAGACTTAGGCTCAAACGGAAGCCCCGGGAGCACAGGAAAATAAGGAACTGTATATATAA
CCACTGGGATCCGGCACTGCCACTGGGACGGTCTATTGCCCACCCCTCTCTCTTTGGCGGTTACA
GTATTCTATTCTTTCTCTGATCCAGCAAGAGCAATTCGTTAGAACAAGCAACGGATGAGCGCGCT
AGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCAACAAGCAACGGTAGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 144265 -- 144764
GGCCTCAACTCGCAATGAAATAGTTCTTGCGGGTTGAAGCTAACGAATTGGCGACTTGCTTGTTG
GGTTGCTTGCATGGGTTCTTGAACTGGACAACCTCACTCTCGCTCGATGCTTTGAATAGCGTGCG
TAGCTTCGTACCCGAACAATAATCGGATCCGGGCCTTGCTATTGTTCGGCCTGAAACAACTGTAT
GTAGTAGAGAGAGAGAGGGGCTTTTTGCGAAAGGCTATCAACGTATACGTATATAGATATAGTGA
GTGTGCGTGCAGGGTGTAGGTGTACCACTTACGAGAAAGAACCCCAAGTAAGTCAAGTAGTTAAC
CAAACACAAGTAAGTAGTTCGTCAGTCCTTCCTCCGACGCCTCCCGTTCATTCTTCTGCATTTCA
TCATGTTTGTTGTGTTGTTCCGTTCATAGGTCCCAAGTCTGTCTCCTCCCTCTCCTTAAGTTAAG
AAAAAAAAAAGAATGCTGCTGGATTGAACGAACATTGTAAGAACC
Found at i:148495 original size:16 final size:18
Alignment explanation
Indices: 148481--148519 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
148471 ATCTAAATAA
148481 AATAAAGAATAAATAGAATT
1 AATAAAGAATAAATA-AA-T
*
148501 AATAAAGAATAAATCAAT
1 AATAAAGAATAAATAAAT
148519 A
1 A
148520 GATATTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 2 0.11
20 14 0.78
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.23
Consensus pattern (18 bp):
AATAAAGAATAAATAAAT
Left flanking sequence: Indices 147981 -- 148480
AGCCTTTCCTTTAGTGGTTGGGGGAAGCATTCCCTTATCTGAACTTGGCGGGCATTCTTTCGCTA
TGGGGTGGGTTTGAACATAGGCTCAAACATTGAAGGGTCCTAGCTACGCCATGCGTTCAATACCA
AAAAAGAAGCCTCTGGAAAGCTGCAGGGATGAACAAAATAGGGCGCTTTCCTGTCTTGCACTGAA
AAAAGGACCTAAGATAAGAGCGTCTTCTCTTAGGTTTATTCCTCCCGCGCCCGCCGCCGCCCGGC
CCGCGTTAGAGGGGGAAGATTAGCAAAGCGGGAAAAGACAGATGGAGGGGGAGCAGCATCTTATT
CTCTTCGCTAGAACTTCCGGATCGGATAAGCATTCGGAACGGGCTCCGCGTTCATTTCGTTGGCA
GAAACGATCCAATCCATTCGGGGAACCCAAAAAGTGTTTTTTTTGACTTCATTCATAGATAGAAT
CAATGGATAGATAGACATAGATGAACGATATATATATCTAAATAA
Right flanking sequence: Indices 148520 -- 149019
GATATTCTCTCTAAAATAAAGGGATAGAATAGACATCCCTTTAGATGTCTATGTATCCTTTCTCT
CTCCATTATTTTTATATTTATTTCTCTCTCAAAAAAATGGAGAGAGAAAGAGCAGATGAATCCTA
TCCCCTATATCGAACACTCATTCCTATCTATTGATAGAAAGATCTTCGTCAAATACCGCTTTGTC
TTTTTTTTTTTTCTTCCTCATATCCAAGGCAGCTTACCACAAGCACCCCACCCCATACGACTATA
AGGGGGGCTGTTCGCCTTTTGAATCAAACAAAGTCGTAGGGGCTTCATAGCTACTTTCATTCTAA
AGGAAACCGAAGAACCTTTAGTCAATAGGAGCCCTCCTTCAGTCGCAAACCCAACAAGCAAGGCC
CCGCAATCCATTAGTGAATTAGTTGCCAATTCGTTAGTAAGCGCACGAAAGCTCAATGATCGATA
AAGGCGAACGAACAAGCAACTTCGCGCTAGGCAGCAAGAAAACGC
Found at i:152754 original size:23 final size:23
Alignment explanation
Indices: 152727--152772 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
152717 TAGCCCTTTA
152727 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
152750 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
152773 GGCCTCAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 152227 -- 152726
ACTCTACCGAGGGGCAAAAAAGGCTGGAACTATTCCTGCCAAAAACAAGGGACCTACTTCTCATC
CTAGGAGTTAGCAGGTATGAGAGAGTCCCCTCTCTGTCTGTCTCTCCGAGTTTCTACTACTAAGT
AAGTAGCACTTCTCTTCTGCTATTCAATCATAGAATCGATTCTGATCAAGCAAGCAGGAGAAGGT
GGTCCTTTCATCTCTCTGCCTGCTCCATGCTGTATAGCCTAAGGATCATGAGCTGGTTGATATAA
TACATGAGATCTGCCCGGTCATTTCGGTAGATGAAGTGAGGGGGCGTGTTAAGTTGAAAATTTCG
AACAGCAAGAGCAATTCCGGCACTATTCAATTCATTCGTTAGAACAAGCAACTCCTGAGCGCGCT
AGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCAACAAGCAACGGTAGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 152773 -- 153272
GGCCTCAACTCGCAATGAAATAGTTCTTGCGGGTTGAAGCTAACGAATTCTTGAGCGCCCTTGAC
TAAGACTAACGAATTGCCGCGAATCCGTTTAAGTAGTTCCGAACGGAAGTTTCATGTAGTTCCGT
CAGGCCCCCTTACTGTTAGGGGCGCAGGTTCTAAAAGATCTCGCCTATAAACCAGAAATCGGGAG
CCTCTCCCGACCTTATATAGTCAAAGGCGAAGGTGGAAGGGGAATGTTCCGCGTTCTCATCTCGG
AGCGGGATTTTCATTAGTCCTATTTCAGGTGCAAAGTCTCTTCAATAAAGACCTCTTTCTTTCTC
CCCCATTTCTTTCTCATTTTGTTGATTGAAAGAGGATAGGCGCTATCCATTGAGTAAAGGGAGGG
TTTGCTACAGTGATTCGGGCGGTTGGTGGCCCCTTCGAGAGTTGCGGGTCCTTGCCGCTGCATGA
GTGGTAGCTCACGCTCAAAACTCCTCCGACACGATAGTCGTTGCG
Found at i:177986 original size:17 final size:17
Alignment explanation
Indices: 177964--178001 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
177954 ATAAGATAGA
177964 AAGCTAATACGCAACAG
1 AAGCTAATACGCAACAG
177981 AAGCTAATACGCAACAG
1 AAGCTAATACGCAACAG
177998 AAGC
1 AAGC
178002 GGATAGGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (17 bp):
AAGCTAATACGCAACAG
Left flanking sequence: Indices 177464 -- 177963
GTTGAAGGGGAGTTTCGAAGGGAAAGGAAAGAGCAAAAGGGAATATTTAGTATAATATAAAAAGG
CGAGCAATTCATCCCAGGCCCGTCCTCTTGTTGGTGTTGGTGCTGTTGTTGCTAACCCGATTGTT
TCATAGTTGGCTCGCTCCGTATGCTCAAAAGGTAAGGCAAGCGTACAACCCCTTTTCGCGTAGTC
TGACGAAGCTCTTACGATTCCGATGTTGATTGCTTGGTTTCCTCTGCATCCTCTCTTCTCATCAC
CATAGGGGCTATCCGTGGATCCATGGCCAGTGTATATTGCTTTTGTTCCGGTCGATTCCATAGCA
TAGTCTGTAGAGAGAGCTAGTCACTCGAGTGGCAAAGAAAGGGGAGGAAATTTCAATTGCCAATA
CTCCACTTTCAGAGAGAAAGCTCAGATGTGCTTTAGCCACAGAAGCTAAGATGTGCTTGCTTCGA
AAACACACTTTCAGAGAGAAAGATCCTAAAAGCTGATAAGATAGA
Right flanking sequence: Indices 178002 -- 178501
GGATAGGCCATGAAAGCTGATAGGCGATGAAAGGCGAACGTCTCTTCTCGTCAATACCCCTGCTT
TATTTAAGAGAAAAGAGCGGACTGGACTCGCCCTACCTATCATAGTGCTTGCGGGCCTAATCCGA
CCGGAACTGTTGGTTCGGAACCTTCCCTTTTCCATTGCACCAGTCGCCTTTGGATAAAACTTTCA
AATAAGGAGAGGCGCGCCGCCTCGCCTACTCATCGCGGTAAAGATTTTCCCTAAGCGATAACTTC
ACTTCAGTTTCTATCTAACTTCCGGAGAATGGCCCACCGCCGGAGTGCTTTCCAGAACCATACCA
ATCCCCCTCCTCTGTCTCCCACGGCATAAATATTATATAAAAATATACAGATTCGACACTGACGA
CCCTACTTTCTTCTTTCCCAGGAATGCATCTGTGCGCCTGCTCGTGGTTACGGGATAAAGAAATC
AATCCCCTAATGTAGGCATGTTTATGTTGATAGTCAGGAAATGAA
Found at i:178018 original size:17 final size:17
Alignment explanation
Indices: 177998--178034 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
177988 TACGCAACAG
177998 AAGCGGATAGGCCATGA
1 AAGCGGATAGGCCATGA
* *
178015 AAGCTGATAGGCGATGA
1 AAGCGGATAGGCCATGA
178032 AAG
1 AAG
178035 GCGAACGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.35, T:0.14
Consensus pattern (17 bp):
AAGCGGATAGGCCATGA
Left flanking sequence: Indices 177498 -- 177997
AAAAGGGAATATTTAGTATAATATAAAAAGGCGAGCAATTCATCCCAGGCCCGTCCTCTTGTTGG
TGTTGGTGCTGTTGTTGCTAACCCGATTGTTTCATAGTTGGCTCGCTCCGTATGCTCAAAAGGTA
AGGCAAGCGTACAACCCCTTTTCGCGTAGTCTGACGAAGCTCTTACGATTCCGATGTTGATTGCT
TGGTTTCCTCTGCATCCTCTCTTCTCATCACCATAGGGGCTATCCGTGGATCCATGGCCAGTGTA
TATTGCTTTTGTTCCGGTCGATTCCATAGCATAGTCTGTAGAGAGAGCTAGTCACTCGAGTGGCA
AAGAAAGGGGAGGAAATTTCAATTGCCAATACTCCACTTTCAGAGAGAAAGCTCAGATGTGCTTT
AGCCACAGAAGCTAAGATGTGCTTGCTTCGAAAACACACTTTCAGAGAGAAAGATCCTAAAAGCT
GATAAGATAGAAAGCTAATACGCAACAGAAGCTAATACGCAACAG
Right flanking sequence: Indices 178035 -- 178534
GCGAACGTCTCTTCTCGTCAATACCCCTGCTTTATTTAAGAGAAAAGAGCGGACTGGACTCGCCC
TACCTATCATAGTGCTTGCGGGCCTAATCCGACCGGAACTGTTGGTTCGGAACCTTCCCTTTTCC
ATTGCACCAGTCGCCTTTGGATAAAACTTTCAAATAAGGAGAGGCGCGCCGCCTCGCCTACTCAT
CGCGGTAAAGATTTTCCCTAAGCGATAACTTCACTTCAGTTTCTATCTAACTTCCGGAGAATGGC
CCACCGCCGGAGTGCTTTCCAGAACCATACCAATCCCCCTCCTCTGTCTCCCACGGCATAAATAT
TATATAAAAATATACAGATTCGACACTGACGACCCTACTTTCTTCTTTCCCAGGAATGCATCTGT
GCGCCTGCTCGTGGTTACGGGATAAAGAAATCAATCCCCTAATGTAGGCATGTTTATGTTGATAG
TCAGGAAATGAAGGCCAGGAGTATTAATGGAAGGCACAACCGTTG
Found at i:185907 original size:23 final size:23
Alignment explanation
Indices: 185880--185950 Score: 142
Period size: 23 Copynumber: 3.1 Consensus size: 23
185870 TAGCCCTTTA
185880 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
185903 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
185926 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
185949 TA
1 TA
185951 GGTGTAGTGC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.18, C:0.13, G:0.21, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 185380 -- 185879
CTTGCTTATGACTTCAGCGGGATGACTTGCTATTTTGACAATAAAAAAATATAGAAGCGGTAAAG
CCTCGGCCTCGCCCGGAGCATCGAGAAGCTGCTCCAAGAGCCAATGACGTAGCTGCTTGTTCAAC
ACACGCACTTCTTTCAAAGACTGGGCTCACTCTCAGTTGAAGAATGGGATCTCCCGTCGGTTCAT
TTTCGCGACGAATAACGAGAAGAACTGCGCTCCAAGCAACTAATAAGTCCTACTTTGCTTTGCTA
CTCTCACGCTTATGGAACATTCCCCATTTCCAACTTACCGCGCATGAAATTCTTCGCCTGGCAAT
TCCGAAGTTAACTCTGTCTAAGCAGGAGACGGCAGGCAACACCGGTAAGGAGGACTACACTTTCC
CAAATGGGGGAGATCATAAGGTTAATTACATGACTTCAAGCAACAAGCAACGGTAGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 185951 -- 186450
GGTGTAGTGCTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCTCCTACGTTTGCGGGCTCGGCA
AAAACGAGACTAGGGACTATGAACCCTACCATATTCCTCAATCATTATTTTTTAGAGAATGCTCC
CCGCTTTTTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTCAAAACCACAGCACAAGCAC
CTACTGAGATGAGCCCTTTGCTTCCGGTAAGGAAAATAGTACCCCATAGTAAACGTAGAACGCGA
GCGTTGAGGCCAATGTGCCCCGGCTGGCTGGTGGCATGACTTGACTGTAATGAGTAAGAAGGGAT
TAAGGAACTACTCAAACAGCGATTCCCGTTTTTGGGCTAGTTGACTCTTAGCTTCCAGCGAGCTA
CGTGCATCAGCTTTTTTTGACTACAAAAACGATTCCTCCCGTGTGAAGTATCTTCTCGATTCCTC
CACGACTCAAAGTAGTCCGTCAACTGAACTTGACTGAAGGTACCG
Found at i:191910 original size:23 final size:23
Alignment explanation
Indices: 191884--191953 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
191874 TATGCGCGTG
191884 AAGCAAGAAAACGCCCTATATAT
1 AAGCAAGAAAACGCCCTATATAT
191907 AAGCAAGAAAACGCCCTATATAT
1 AAGCAAGAAAACGCCCTATATAT
191930 AAGCAAGAAAACGCCCTATATAT
1 AAGCAAGAAAACGCCCTATATAT
191953 A
1 A
191954 TAAAGGGCTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.17
Consensus pattern (23 bp):
AAGCAAGAAAACGCCCTATATAT
Left flanking sequence: Indices 191384 -- 191883
GGTGATCCATGCTAAGAGAATGAAATTTGGCCAGGAAAGCGAAAGAAAGCCTTTACCTCTTCCTT
TGCACAACCCCTTTTTCCACTTGAAGCTCTTCAAATAGCCCCAGCTAGATTCTCAAAGAGTGGCT
TGGCTTAAAAACTCCTTTCGTCTCTTGTCTTTCTCGATGCGATTCTGTTGTGTGTTAACTATTGA
AAGGACAGGATCAGTATGACCTCTGGCTCAAGGACTGGCCTTCATCCCCCGCTACCCCTCTTCTT
TTAATGCCTACAGAGAGGTTTAGTTAGCCTTTTCTGCCGACTAGCAGATGTGGCATATATTGATA
TTATCCAGACCCTTCCCCCTATCCTTACTGCTGATCTATCTATGCCTCAAGCTCCTGACCAAGGT
GAAGATATTAGCTTCCAAGCTTTGTCAGCCCGGAAAACTATGTTCGAAAAATTATTATTCAGATG
ACCAGCAGCAAGAAAACGGCTGCAGCAAGAAAACGTATGCGCGTG
Right flanking sequence: Indices 191954 -- 192453
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTT
GTTCTAACGAATGAATTGAATAGTGCCGGAATTGCTCTGGCTTCTTCGGCCAGAACAACCTGACC
TAACGCAACGCCTCCACTTGCGTAGTAGTTTGCTCCTACGTTTGCAGGAACGAAATCCGGCAGCC
AATTGCTGGCTCTGAATAACCAGCCCAGCAATAAGCTCAATTCTTCCATAACATAACGAGGCGGG
GTTGCGCGCCAGCCGAGTGACGTAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTA
TAGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATAGATATGCCGGTCAT
TAGAAGGAAGAACCGCCATAAAAAGATTCCTCGTGTATCATCTGT
Found at i:192081 original size:64 final size:63
Alignment explanation
Indices: 191966--192086 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 63
191956 AAGGGCTAAC
* *
191966 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCG-TAGCGCGCTACAGTTGCTTGTTGGCGTTA
*
192030 GCACCTTACGTTTATTGAATGGGGCTTTCGCGC-TAGCGCGCTCAGGAGTTGCTTGTT
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTAGCGCGCT-A-CAGTTGCTTGTT
192087 CTAACGAATG
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
62 8 0.15
63 1 0.02
64 43 0.83
ACGTcount: A:0.13, C:0.23, G:0.29, T:0.35
Consensus pattern (63 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTAGCGCGCTACAGTTGCTTGTTGGCGTTA
Left flanking sequence: Indices 191466 -- 191965
CACTTGAAGCTCTTCAAATAGCCCCAGCTAGATTCTCAAAGAGTGGCTTGGCTTAAAAACTCCTT
TCGTCTCTTGTCTTTCTCGATGCGATTCTGTTGTGTGTTAACTATTGAAAGGACAGGATCAGTAT
GACCTCTGGCTCAAGGACTGGCCTTCATCCCCCGCTACCCCTCTTCTTTTAATGCCTACAGAGAG
GTTTAGTTAGCCTTTTCTGCCGACTAGCAGATGTGGCATATATTGATATTATCCAGACCCTTCCC
CCTATCCTTACTGCTGATCTATCTATGCCTCAAGCTCCTGACCAAGGTGAAGATATTAGCTTCCA
AGCTTTGTCAGCCCGGAAAACTATGTTCGAAAAATTATTATTCAGATGACCAGCAGCAAGAAAAC
GGCTGCAGCAAGAAAACGTATGCGCGTGAAGCAAGAAAACGCCCTATATATAAGCAAGAAAACGC
CCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGGCTAAC
Right flanking sequence: Indices 192087 -- 192586
CTAACGAATGAATTGAATAGTGCCGGAATTGCTCTGGCTTCTTCGGCCAGAACAACCTGACCTAA
CGCAACGCCTCCACTTGCGTAGTAGTTTGCTCCTACGTTTGCAGGAACGAAATCCGGCAGCCAAT
TGCTGGCTCTGAATAACCAGCCCAGCAATAAGCTCAATTCTTCCATAACATAACGAGGCGGGGTT
GCGCGCCAGCCGAGTGACGTAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATAG
GTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATAGATATGCCGGTCATTAG
AAGGAAGAACCGCCATAAAAAGATTCCTCGTGTATCATCTGTAGCAAAACTATGAACGGGAGCTA
GCAATCCGGATCGTATTGAAGAGGTTCCTGAGACACAGCATGGAAGAGTCACAATATTAAGAAGC
GAGGTCCAAGAATTCGGAAGGGGTAGAATTACTGAATGAATACGA
Found at i:202431 original size:17 final size:17
Alignment explanation
Indices: 202409--202443 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
202399 CGCGCGCCGG
202409 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
202426 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
202443 G
1 G
202444 TGCGTGACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 201909 -- 202408
GGCCATATTCTCATTCCATACACGAGAGCTAGGTTGGTCATTCACTTCGAAGGAGGTACGCTAGA
GCACAAAAGAAAGGCAAGCAAGCCGATGAGGATCGGTTCTCTGATCGCGTAAGCGAGGAAGAAAA
GAAAGCGACTACCGGTTTGGAGCACTGCAACCAATCTCTATACCCGTATAAGCTCTGGACACCGG
ATGGAATGTCTCTCTCCTGAGGGAAGTAGCTAACTGAATATGGATGCTAGGGAAGGCAGGATAAG
AGATAGATCTTAGTGTTAGTATGTGGCTTAACGAACTTAGGTCATCTCCAGTGATAGCTAGTATG
CGAATGTCTTCTAGTTTGTGATAGCTAGTATGCGAATGTCTCTTTCCTGCCTTGATAGTGGTTAG
CCTAGCCTTCTGTTAGATCTATCCTTTCCCGATTGAAAGAGTCTTTTCATTTCATTAGCTTTCTC
ACTCAATAAGTCTAATCCAGCAAGAAAACGGCTTTCGCGCGCCGG
Right flanking sequence: Indices 202444 -- 202943
TGCGTGACTAACGCACAACGGCTTTCGCGCTAGGCTTGAAACCGTTGCTTGTTGCGCAACGGCTT
TCGCGCTAGGGCGCTCTACCGTTGCTTGTTGAGTTGCTTGTTGGGTTCGTTCATGCTTTTCACTA
TCTTTCTGTCGCTTTTGAGATCTCTTATTAAGGACTCGCTCAAAGCAAAGATCTCTTATTACGGA
CTCGCTCTTTCTCCTACTTAGCTCAAGCCCTTATCGGTCGACTCCTGCGAGGAGTCTCACTTGCT
GCATTCCGACGCCTCCCTCAGGTCGGGGTTAAGGGCGCTATGTCCGGACAATAGCTATGAGAAGA
GTGATAATAAAGAATCTGACTCTCCTTCAATCTAAACAGTACTTGGCCAAAAGAAGCTAGAAGCT
TTTACGAAAGCATGGAGCGCCAACTTCGACTTGCATTAAGATACTAAGGCTCTGCAGCTCACTAA
CAACCCGCGTACATGAGTACTCTATCTAAGTATTATCATATAGAA
Found at i:206021 original size:18 final size:18
Alignment explanation
Indices: 205998--206033 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
205988 CAGCTAAACC
205998 AGTCACTATACCCATAAG
1 AGTCACTATACCCATAAG
*
206016 AGTCACTATAGCCATAAG
1 AGTCACTATACCCATAAG
206034 CCGGGTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (18 bp):
AGTCACTATACCCATAAG
Left flanking sequence: Indices 205498 -- 205997
TAGGAGAGGGAGGCCCTTATCTCATGCCTAAGTCAGGAATGGAGGGACTGTTAAGAAGTGGTAGC
TATTCCTTTGCTTACGGCTCTTGTAGCTAATCGGTTAACTAATTCCCTGCTCTGGCTGCTAAGAC
TTGGCTGTTTATGGCAACTACTAGTCTTCTCCTTCTTGTAGCTAGACTAGTCATTCTACCTGTGC
TTATAGACTTGGCCAAGTGAGTGAGGGAAGGAGCTCTCCTTAGAGAGGTCCAACCGAGTGGAAGC
AAGGATTCACCGAAGGTGCAGTGAAACCCTTGACTTGAAAACCTCTTCCTTGTAGCTAGACTAGC
CACTAATACCTATGCTTTTCTTATGATGTGAAGGCACTCTCAGGTGATCGGAAGACTCGACTCAC
TGCAAGTCTAGCTTTGGGTAAACAGTTGTTGGAGGAGAAGCATTTCTTCCTAATCGGTCAGTGGT
GAAGGTGAATAAACTCCTGTCTCTGTCTTGGCTTGCAGCTAAACC
Right flanking sequence: Indices 206034 -- 206533
CCGGGTTCTCAAACCATGAACAGCTACAAGGAGAGAGAGAAGCCCTTATTCAATGCTTCATTCAT
AGGAGACCACGCAGAGCAGGTGTAGCGTTCGTAGCAACCGAACCATACTACTTGACTATGTCATT
AGTTGAGGAAAGTAAGTCACCCACCAAGTTAATCGAGAATTTCTATGCTTGGTTCTAAGATCAAA
ACCTTGACAAGGGGAAAGAGCCTTAACCATATAACTAAGAAAGAGACCCACAGTCTCGTAGCGAC
CGTTAAGCTCGTAGCAAGAAATACGGAGCCATTGCAGATGATTTAGATAGAGGGCGCAGGAAGGT
GTAGGCAGAAGCTTTCTGAGTCGGGGAGTTAGAGAGATTGAATGACCTGGCAGGCAGCAGGGAAT
AGTGGATTCCACTTTATCGGCGATGGCATATAGAACTAATATACTACGGCTCAAAACGGGATATG
CAAGGATTCCCTACTTCCGGATAGAGAGGAAGCGCTAAGGTCCAT
Found at i:207867 original size:44 final size:44
Alignment explanation
Indices: 207813--207900 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
207803 AGGCTAACTA
207813 AACGCTTGAGAAAGACATCCCCTGGCATGAGTTTACCAGTTGGC
1 AACGCTTGAGAAAGACATCCCCTGGCATGAGTTTACCAGTTGGC
207857 AACGCTTGAGAAAGACATCCCCTGGCATGAGTTTACCAGTTGGC
1 AACGCTTGAGAAAGACATCCCCTGGCATGAGTTTACCAGTTGGC
207901 TTTGTTCCCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (44 bp):
AACGCTTGAGAAAGACATCCCCTGGCATGAGTTTACCAGTTGGC
Left flanking sequence: Indices 207313 -- 207812
ACCACTAGAAGGTTATTCTCGGCTAGGGGAATTCGATCCATTTAGAAACAGAGTGCGGGTAGCTA
TGATTGAAATCAATCGATAAGAGAAATTATATTAGTAATAGAAGAAGTAAGCATCCAGTAGGCTA
TTCCTTAGTAGACCTATCAGTAGACAGAGTCAGTAGCTAGAGAAGGAGAAAGGAGAGTGAAATCT
AGGTGGTGCATCATAGTGGTTAGAGTCGTCTTGGCTGGCGTAGGGCATGGATCAAATCCAGAGAC
TTCCGTGCTCAGTCAAGCTGCGGTAGCAGGAAGATGGGGGAGCTAGGCCCTATAGATAGAAGGAA
GGAGACCAACTTAAGGCTACAGTCCATCGGCTCGCAGAGGGCGCTTCTTTTCACCTTTCCTTCAG
GGTAGACATGGGGGAATCCTCACAGTCAGATAGCTATGAGTGAAAGAAGAAAGATAGTTTAGAGT
TTACCGTAGCTACTTCTTCCCCTGGCATTGTAGCGAGGCTAACTA
Right flanking sequence: Indices 207901 -- 208400
TTTGTTCCCTGGGCAAGACTTTTCCAGTTGGGGAAGAGAAAGAAGTTCCCCTCCAATCCAACACT
TATTAGTCGAGTAGTAACCCCCTCTCCTGCACCTGAAACTCGAAGTAAAGCTATTCTCTTGCCCA
AACTCCCCTCTACTGCATTCCCGAAGTTCACAGTGCCACTCCTGTCCTTTCTAATAGGAATGTTC
CCCCCTAGCCTGCACCTGCAATTGATTGGTTGAACCAGTAGTCTCGTCCCCCCTCTGCCTATTCT
AAAGAGCGATTACCCGCTCTCCTGAGGAAATTGGGTACTCAACAACGAAAGAACCTTACCTGCGC
TTTGGTGCTTTGGGCTATGCCATGTCTTCAAAACCTTAGCGACTTTACTCGAAACAGAATCGCTA
CATCAACATCAGCCGCTGGCACTTCTCTGATCGATCTGGTACACCCGCCAATACTACTTATTAGT
CGAGCGGAGGAAAGAGGCTTGTTACACCTTTGCTTTATGCCCCGT
Found at i:214303 original size:23 final size:23
Alignment explanation
Indices: 214274--214321 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
214264 AACGCCTTTA
214274 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
214297 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
214320 TA
1 TA
214322 GGTGTAGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 213774 -- 214273
CCGTCGAATTGGAAGACATCACCTGAAGCCTGTTAGAGCTAAGGCAACTAATGGATTCGTACCCG
CCCTCTCTTGGAATTGCCCACTCAAAGCTGCTTTCTGCGGATTCAGAATAAGACTACTTGCTTGA
AGAGCTACGTGCTCATGTTCACTTCGAGCTTGTTGAGGGGCCACCAATTTATTCACTTGTGCGAG
GCCCATTTTATGGTGTTTTGACACAATGATTGGCGGGCGCCAGGCGTCTCTGACATTAAAAAAGG
TAATTGAATTCCCCCCTACTAGCTCCAAAAAGGAGTTCGGGGACTCTGGGCTCTCATGATCTGAT
TCTTCCGATCGATCGGTCTACAAGGGCACGGCACGTTACAGTTAGGCACCTTACCATCGAGCAGT
CAGTCCCAAGCGTTGCGTTCATTCAAGCAAAGCTCATATGCCAACAAGCAACTCCTGAGCGCGCT
AGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCTTTA
Right flanking sequence: Indices 214322 -- 214821
GGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTGAAGTCTAATTCAGAACTTGACTAAGCCC
CGCGTAGTAGTTTGCAGCTTTCAAGCCGGAGTTTGCTGGTTCAGAGCTAGACCGACTACTCCAAG
AGCACTCATCCATAAACCGGTCACTGGCAAAATGAAATATTAAGAGATGTAACCAACGGAAATAG
CAAGCCCGAATCTTTGGGACCAGAAGCGGTTAGCAGTGACCCATAGGTCTCTTCAGCGGTGAAAA
GCAAAAGCACGGAATGTAACCATCTTCGAATTCAGTCTTCTCTACAGTAGCACCATGAATAGCGC
ATAGCGGAGCAGCGCCCAGGAGGCAAGCAACTCCAATCATATGAAATGGGTTCAACAATCAATTA
TTCAAACAAGAATAGGTTTCTTTCTAAAAAAAAGCTGCAAGACCGGTGCAAAAAACCGAAAGTCC
TTAAAGTTCCTCCCAGATACATGGCTTACATACCCGGCTCAACAT
Found at i:224065 original size:23 final size:23
Alignment explanation
Indices: 224035--224080 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
224025 AGTTGAGGCC
224035 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
224058 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
224081 TAAAGGGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.17
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 223535 -- 224034
TGCAGAAGAATGAGGTTCGAGTTGATGAACAGGAGAAGGCCGCAATACATCTCCATCACCATTCT
CCCCCGGGGCCGATGAATTAGGTTAAGGATAATAAATATGAGGCGATATCATTAAAGATAACATT
CAAGGATACATCGAGTCTCTTGGATTTCACGTCATAGCATCTATACCCAGACTGAGCATATCCAA
GAAAGACACAAGTGGTTGCCTTGGAATTTTTCTCTGAACTGCGCAGGAATATGAACAAAACACGT
GCATCCAAACACTATAAAATGCCTATAGGATGGGATGGTGCTGCCCCAGTAAGAAGTTCGTGAGG
TGCCGCTGCAGCTTCTTCCCCGTCGAGAGAGAGATGTCCCTTCTTTATGCACATCCATATACATA
GCCAGACACAAACAAAGGTCTACAATCCAAGAAGCAAGGGATTCGCGGCAATTCCGGCACTATTC
AATGAAAGAGCAAGAGCAAGAACTATTTCATTGCGAGTTGAGGCC
Right flanking sequence: Indices 224081 -- 224580
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTT
GTTTGCCATGATGAATTAGTTGCCGTTTTCTTGCTGGAACGGAACCAAAAGTCTAAAGCTCCCTC
CCATCCCAGGAATGATTGAATAAAGTTATCTCAAGCAAGAAAATGAAAATCGAACAGTAAAAAAG
AAAGATAGGGATCCCCCTACCATTAAAGGGCATTTAGGAAATGGAATAAAGACAAGTTACTGTTG
AATGTAAGCAAAATGAACATGACTATCAAACTTCTTCAATAAGCAAACAAGAAGCATAAAAGATT
TCGGATAGGATCCACGGTCTTTGGGATAGCAAGCACTAGCTCCCAGTGCGACTTCATAAGAAGGG
GTAAAGGATGAAATAAAGGATAATTCAAGAGACGTAGTGCTTACT
Found at i:224208 original size:64 final size:63
Alignment explanation
Indices: 224093--224213 Score: 181
Period size: 64 Copynumber: 1.9 Consensus size: 63
224083 AAGGGCTAAC
* *
224093 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCG-TAGCGCGCTACAGTTGCTTGTTGGCGTTA
*
224157 GCACCTTACGTTTATTGAATGGGGCTTTCGCGC-TAGCGCGCTCAGGAGTTGCTTGTT
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTAGCGCGCT-A-CAGTTGCTTGTT
224214 TGCCATGATG
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
62 8 0.15
63 1 0.02
64 43 0.83
ACGTcount: A:0.13, C:0.23, G:0.29, T:0.35
Consensus pattern (63 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTAGCGCGCTACAGTTGCTTGTTGGCGTTA
Left flanking sequence: Indices 223593 -- 224092
CCATTCTCCCCCGGGGCCGATGAATTAGGTTAAGGATAATAAATATGAGGCGATATCATTAAAGA
TAACATTCAAGGATACATCGAGTCTCTTGGATTTCACGTCATAGCATCTATACCCAGACTGAGCA
TATCCAAGAAAGACACAAGTGGTTGCCTTGGAATTTTTCTCTGAACTGCGCAGGAATATGAACAA
AACACGTGCATCCAAACACTATAAAATGCCTATAGGATGGGATGGTGCTGCCCCAGTAAGAAGTT
CGTGAGGTGCCGCTGCAGCTTCTTCCCCGTCGAGAGAGAGATGTCCCTTCTTTATGCACATCCAT
ATACATAGCCAGACACAAACAAAGGTCTACAATCCAAGAAGCAAGGGATTCGCGGCAATTCCGGC
ACTATTCAATGAAAGAGCAAGAGCAAGAACTATTTCATTGCGAGTTGAGGCCAGCAAGAAAACGC
CCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGGCTAAC
Right flanking sequence: Indices 224214 -- 224713
TGCCATGATGAATTAGTTGCCGTTTTCTTGCTGGAACGGAACCAAAAGTCTAAAGCTCCCTCCCA
TCCCAGGAATGATTGAATAAAGTTATCTCAAGCAAGAAAATGAAAATCGAACAGTAAAAAAGAAA
GATAGGGATCCCCCTACCATTAAAGGGCATTTAGGAAATGGAATAAAGACAAGTTACTGTTGAAT
GTAAGCAAAATGAACATGACTATCAAACTTCTTCAATAAGCAAACAAGAAGCATAAAAGATTTCG
GATAGGATCCACGGTCTTTGGGATAGCAAGCACTAGCTCCCAGTGCGACTTCATAAGAAGGGGTA
AAGGATGAAATAAAGGATAATTCAAGAGACGTAGTGCTTACTATGGCGCTTCCTTCGGAGCCCAG
GAAAGGTCCTAAAGCACCTGCAGCGGAACTACCGAGCAGGGGTAGCAGAAGTCTTAGTAAATACA
TGAATCGAATCTGGGGACGGATCGGGGGCTACAATGTTGGCTGGC
Found at i:231929 original size:23 final size:23
Alignment explanation
Indices: 231903--232017 Score: 155
Period size: 23 Copynumber: 5.0 Consensus size: 23
231893 GAACACTCCT
231903 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
***
231926 AGCAAGAAAACG---TATGCGCGTGA
1 AGCAAGAAAACGCCCTAT--ATAT-A
231949 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
231972 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
231995 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
232018 TAAAGGGCTA
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.04
22 1 0.01
23 72 0.90
24 1 0.01
26 3 0.04
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.17
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 231403 -- 231902
ACCGGAACAGTTTGCGGCGCCCCGTTTAAGGTTGGGGGCTTCGCCTTCCCTAGCTTACAAGCGGG
GAAGGGCTGTCTGATTGCTTTGGCAAGCTAGAGTGTGGCATCCCCTTTTCCGACCCAGTCAAATT
CCTTCCCTCTAAGAAGAAAAACCTTCCTTTAGGACTTCCTCCTTAATGCACTGGTAGTTGAGTAA
GGGTAGTGAAGATCAAACCAGTAACTGAACTTTCTTCCCCGGCTGGTAGCTAGACTTGCGACTCT
TTTCCTAGACCGGTAAGTATAACCCTGACCTGATCTTATATGTCTCACGCTAGGAGTGCGGGAAG
GTTTCCCTGGGAGGGGAACCAACCAAACGGAAGACATGATCAACCGAAGTTGTTGTTTGGGAAAG
CAGTTATTGAAGGGGAATCAGTTGTTGACAGTTCGGGCAAGTCTGTGAACAAGTAAGAACTCTTG
CTATGATTTATTATCGTATTGCAAAGTGAGTGATGGAACACTCCT
Right flanking sequence: Indices 232018 -- 232517
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTT
GTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGGCGCTCATCCCTTGCTTGT
TGGGTGGCAGAGCCCTCGCCTATATGAAAAAACATGCGTTAATGCTTCCAAACGTACAATCGGAC
TATTAAACAGAGTGATTCTTTTAGGGCAGAATCGCAGGGCTAGTCTCTTTGGCTCGCTAAGCTAC
TCACGAGTTAGTTCCAGCTGCTCCAAAGGGGTGTGTATAAGGCTGTTTCGGTCAACTGATCTGTC
GACCAGCGGATAATATTATTTATAGTGGGGTCTCCCAAGCATTAGATAGACTCGAGGCCTGCTCT
ACATGAATCAAACTGTTCTTCAATATGCTTTTCCTTTCTAAGCGA
Found at i:232131 original size:64 final size:64
Alignment explanation
Indices: 232030--232215 Score: 324
Period size: 64 Copynumber: 2.9 Consensus size: 64
232020 AAGGGCTAAC
232030 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
232094 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
*
232158 GCACCTTACGTTTATTGAATGGGGCTTTCGCGC--TAGGCGCTC-ATCCCTTGCTTGTTGG
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTA-GCGCTCTA-CCGTTGCTTGTTGG
232216 GTGGCAGAGC
Statistics
Matches: 119, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
62 3 0.03
63 19 0.16
64 97 0.82
ACGTcount: A:0.12, C:0.24, G:0.28, T:0.35
Consensus pattern (64 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
Left flanking sequence: Indices 231530 -- 232029
ATTCCTTCCCTCTAAGAAGAAAAACCTTCCTTTAGGACTTCCTCCTTAATGCACTGGTAGTTGAG
TAAGGGTAGTGAAGATCAAACCAGTAACTGAACTTTCTTCCCCGGCTGGTAGCTAGACTTGCGAC
TCTTTTCCTAGACCGGTAAGTATAACCCTGACCTGATCTTATATGTCTCACGCTAGGAGTGCGGG
AAGGTTTCCCTGGGAGGGGAACCAACCAAACGGAAGACATGATCAACCGAAGTTGTTGTTTGGGA
AAGCAGTTATTGAAGGGGAATCAGTTGTTGACAGTTCGGGCAAGTCTGTGAACAAGTAAGAACTC
TTGCTATGATTTATTATCGTATTGCAAAGTGAGTGATGGAACACTCCTAGCAAGAAAACGCCCTA
TATATAAGCAAGAAAACGTATGCGCGTGAAGCAAGAAAACGCCCTATATATAAGCAAGAAAACGC
CCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGGCTAAC
Right flanking sequence: Indices 232216 -- 232715
GTGGCAGAGCCCTCGCCTATATGAAAAAACATGCGTTAATGCTTCCAAACGTACAATCGGACTAT
TAAACAGAGTGATTCTTTTAGGGCAGAATCGCAGGGCTAGTCTCTTTGGCTCGCTAAGCTACTCA
CGAGTTAGTTCCAGCTGCTCCAAAGGGGTGTGTATAAGGCTGTTTCGGTCAACTGATCTGTCGAC
CAGCGGATAATATTATTTATAGTGGGGTCTCCCAAGCATTAGATAGACTCGAGGCCTGCTCTACA
TGAATCAAACTGTTCTTCAATATGCTTTTCCTTTCTAAGCGATAGCGAAGCCTCTAGAAATGAGA
CGGGCGAATTGGATGCCCACACAAAAGATTTCTTTGCGGACTTGGACTCGTTCTTTCGAGACCTA
GTGCTTTTAAAATCAGCATCTTCTAACTTATGAGCGAAGTACTACTGTGGGGCGTACATATGAGT
TGGATCGGAGATCTTCCCTTGTGAGCCTCTTTTCGTCAATTGATA
Found at i:265565 original size:23 final size:23
Alignment explanation
Indices: 265535--265626 Score: 166
Period size: 23 Copynumber: 4.0 Consensus size: 23
265525 GACTTCTCAC
265535 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
**
265558 AGCAAGAAAACGCCCTATATAGC
1 AGCAAGAAAACGCCCTATATATA
265581 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
265604 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
265627 TAAAGGGCTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.47, C:0.23, G:0.14, T:0.16
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 265035 -- 265534
CCGATCCCTTAAATAGTATTCACGCTTATTTCACATGCGAGGATTGGGAACACCGCAAGTCAAAC
GAACTAGAATCACTTCCCTCTACCTTTCTTAACTTACAGGCACATCCATCTAGAAGCAGTTGTGG
CTAGCCAAATGCCGAAGGCGCGGCTAGACCGAAAGAGAAATGTTAATAAATGTTATTAGTGGCAG
AAGGAGGTACTCACTTATAAAGCCAAATCCGGAGCACTTACTCAATAAGAATACCGCGCATGAAT
GCAAGTAGGAGTTTGAGACGGAGTAAGAGCCAAAGGAGAATGTACCCTGCGACGGGATCCCTGTC
TGCGAATGATGAGCTTGATTCTTTGTAACCAGTGGGCCTTTGAAGGCGAAGCCGTGTTCTCTACC
CCTTGGGGAAAATAGAATGAACTTGGTAAGGGCTAAATAGAGAAAGAAAGGAAAGATCGACGTTG
TGGCACCCTCCGTTGATGTTGATGCAGACAGATTAGACTTCTCAC
Right flanking sequence: Indices 265627 -- 266126
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTT
GTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGGCGCTCATCCCTTGCTTGT
TGGTACGAACGGAACGGAGTCAGTATAGAACGGAACGAACTGAGCTATTGGTAACGGCATCGCTG
CTAACGCCTCGCTTCGCTTCTCTGTTTGAGAATGAATAGCTGCTAACGGCTTGTTGCTGCTCCGG
AACCTGCGGTTATTCCATCTCCTACACGTACTGACTGCTTCTGCTCCGAGATGCACCTGTGTATA
GCAGGATAGATAAGACTCGATTTTATCTTGCTTCTAGTCGAAGATCTAAGGATAGATATAATGTC
TTTCCTGGGTTTCGAGAAGGAAGAGTGAAGAAGCATAAGCCCTTT
Found at i:265744 original size:64 final size:63
Alignment explanation
Indices: 265639--265824 Score: 286
Period size: 64 Copynumber: 2.9 Consensus size: 63
265629 AAGGGCTAAC
265639 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTA-GCGCTCTA-CCGTTGCTTGTTGGCGTT
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGC--TAGGCGCTC-AGCCGTTGCTTGTTGGCGTT
265702 A
63 A
**
265703 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGCGCTCAGGAGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAG-GCGCTCAGCCGTTGCTTGTTGGCGTTA
* *
265767 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGGCGCTCATCCCTTGCTTGTTGG
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGGCGCTCAGCCGTTGCTTGTTGG
265825 TACGAACGGA
Statistics
Matches: 113, Mismatches: 6, Indels: 7
0.90 0.05 0.06
Matches are distributed among these distances:
62 2 0.02
63 19 0.17
64 92 0.81
ACGTcount: A:0.13, C:0.24, G:0.29, T:0.34
Consensus pattern (63 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGGCGCTCAGCCGTTGCTTGTTGGCGTTA
Left flanking sequence: Indices 265139 -- 265638
GCACATCCATCTAGAAGCAGTTGTGGCTAGCCAAATGCCGAAGGCGCGGCTAGACCGAAAGAGAA
ATGTTAATAAATGTTATTAGTGGCAGAAGGAGGTACTCACTTATAAAGCCAAATCCGGAGCACTT
ACTCAATAAGAATACCGCGCATGAATGCAAGTAGGAGTTTGAGACGGAGTAAGAGCCAAAGGAGA
ATGTACCCTGCGACGGGATCCCTGTCTGCGAATGATGAGCTTGATTCTTTGTAACCAGTGGGCCT
TTGAAGGCGAAGCCGTGTTCTCTACCCCTTGGGGAAAATAGAATGAACTTGGTAAGGGCTAAATA
GAGAAAGAAAGGAAAGATCGACGTTGTGGCACCCTCCGTTGATGTTGATGCAGACAGATTAGACT
TCTCACAGCAAGAAAACGCCCTATATATAAGCAAGAAAACGCCCTATATAGCAGCAAGAAAACGC
CCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGGCTAAC
Right flanking sequence: Indices 265825 -- 266324
TACGAACGGAACGGAGTCAGTATAGAACGGAACGAACTGAGCTATTGGTAACGGCATCGCTGCTA
ACGCCTCGCTTCGCTTCTCTGTTTGAGAATGAATAGCTGCTAACGGCTTGTTGCTGCTCCGGAAC
CTGCGGTTATTCCATCTCCTACACGTACTGACTGCTTCTGCTCCGAGATGCACCTGTGTATAGCA
GGATAGATAAGACTCGATTTTATCTTGCTTCTAGTCGAAGATCTAAGGATAGATATAATGTCTTT
CCTGGGTTTCGAGAAGGAAGAGTGAAGAAGCATAAGCCCTTTCATTGCCTCTAGCCCTATGAAGG
GGCAAAGGAGTGAGGGCAGGTTTCCCTGGGAGGGGATCCAACCGAGTGGAAGTAGAGAGTAACCG
AAGGCTTGTTCCTGTAGAGGAATGTGGAACAAGGATTCTCACTCACAAGCAAGTATAGAACGGAA
TGCCTCTTGCTTGGTCTCTTCCTTATAATCTAAGCAAGTAAACTA
Found at i:272190 original size:28 final size:27
Alignment explanation
Indices: 272154--272208 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
272144 GAAATGATTA
*
272154 TCTTCTAATCCCACTCGTAGAGGGGAAC
1 TCTTCTAAT-CAACTCGTAGAGGGGAAC
*
272182 TCTTTTAATCAACTCGTAGAGGGGAAC
1 TCTTCTAATCAACTCGTAGAGGGGAAC
272209 CGTGATTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.68
28 8 0.32
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (27 bp):
TCTTCTAATCAACTCGTAGAGGGGAAC
Left flanking sequence: Indices 271654 -- 272153
TGTCGAAAATCCCGCTTTCATTCAAACTTTCAGTAAAGGGACCAAATTGAGAGAAAGCAAAATCA
GTGATCTCTGCTACATGAAAGTGCTCTTTGACTCAGCCGATTCTTTGATCCAATTCCTAGCCCAT
ATCTCATGAGTGCAGCTTCACTCGAAGGGTAAGCATACTCTATGAATTGCAGCTAGGAGGGCACT
TCACTGACTGAATCCACTGGCTGGCTCTGGCTATCAACCCTCAACAAGTATAGTCGATTGAGGTG
GCGCGCTGTTGAAGTAGACCGAACCCAGAGAAAGAGGGGTGGATGACAGCTTCGTGTATCTCATT
CCAGGGGCTGGAGCCGGGACTGAATCAAAAGGGAGGGGCGCCCTCATCAAATAAATAAGGACGGA
AAGGAAACTTCATTGGAAATGGAATCCTTATGTCTCCCCCAGCCATGGGGACCTATGATCAAATA
GAGTGAAACTGCCTTTCCCCTTCCTACCCGTTCTAGAAATGATTA
Right flanking sequence: Indices 272209 -- 272708
CGTGATTCTTGCCTGCCCTACTCTTATAGTGGAGCTTCCTTCTTCCTACCCGTTCTAGAAAGGTT
TCTTGTTGTTTCCCCTCTCGAGGCGGTCATCGATCGAGAGAAGCAGGGGCGAGCGCTTGAAAAAA
AATGAAAAAAATCCTATCATTGTTTCACGACCTAGATACGAGAACAGAGACGCATCCCCACTCCA
TTTTGATTGGAGCCCAGAAGGTGAGGCGGGTAGACGCTTCTTCATCTGTACCTCGGACAGGAATG
GGTTGATATAAGTGAGACCGCCCTTCTCTATGAATCGGGAATGCCCGTCGGTATCAGAGGGGAGC
TTCTTATCGGTCGGTGGGGATCCGAAGGGAGGTGCAAGGCTTGGCATGGATTAGATGGCTTGAAA
GGGAGGGTGGGATGGTTCTTATTCGCTTCTTACCATAAATGGCATTGAATGAGCGTAAATCAAGA
AATCCAGATTCTGGTTGGCCGGTCCCCATGGGTGGGAGTCTTTTG
Found at i:286628 original size:28 final size:28
Alignment explanation
Indices: 286588--286643 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
286578 TGATCCGCTT
286588 CTTCTCATATATGTGCACTACTCTCTAA
1 CTTCTCATATATGTGCACTACTCTCTAA
*
286616 CTTCTCTTATATGTGCACTACTCTCTAA
1 CTTCTCATATATGTGCACTACTCTCTAA
286644 TCTGATCGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.29, G:0.07, T:0.41
Consensus pattern (28 bp):
CTTCTCATATATGTGCACTACTCTCTAA
Left flanking sequence: Indices 286088 -- 286587
AGGGGATTGAGTCAGGTAGAACATTCGATTTGGGCAACGGAACTGATCGAATTGGGGCTTTCTCA
TACTCCCACATTGAAGGAATGCCCGCATCAGTACAGTCGGAAGTAGCAGCGCGACCAGAAGCAGC
GGAAGTCCCCGGCGAGGAGAAAAAGACTTGAATTTCCCTCAACTCCTCACCAACGGGCTACAGGG
GGATAAGTAGGTCTGAGACAAGCAGTTCAACCCAACAAGGAAGGGATTCGCGAAAGCCGTTGTGC
GTTAGTCACGCACAGCTTCTCTTTATCGAGATTTAGCCTAAACCCCACTCCTCTTTAGAGGTGCT
CTCATCTCAGACTTATTTCTATCTTTATCCTTCCTTTTTTCCAATGATGTTTAGCAATCGATAAG
ATCGGTCAAACGAAGGGCTTCCTTTTCTTTCCGATCAGATACATAAATCAAAGAAAGAGAAAAAA
CATCTCCGATGAGATCATACTCTAGGCATCCCTTTTGATCCGCTT
Right flanking sequence: Indices 286644 -- 287143
TCTGATCGCTTGCCGTAGATGTTGATGTGATCAGGTGAGAGGTGTTGTAGAGAGAACAGAAAGAA
GCTCTAAGATGAGCAAGAAAACGTATGCAGCAAGAAAACGTATGTGCGTGAGCAAGGAAACGGCT
GTGCGGGAGCTACTGAGCAAGGAAATGTATGCTAGCTCATCTCGTTTCGCTAACGCTACACTCGT
TCTACGCTAGCTACATATACAGTTCTTCCGCGCTCCATCCGTTGCTTGTTGACTACGACCCGACA
TAAATGCCAGTGGGTGCTATGTAGGCTCATTGGTCCCGCCGCTTTGTTGATTGAAAAGCTATGTC
AAAGCGCTTCCTCTCCCTGCCTCTTAGTGGCCATTTCTCTACATATATATGATATGATAAGGACA
CGACTCTCTATATATGATAATTGGTTGAAGTAAGCTAATTCTCTAAGCTCGCTAGTCATCTACTA
TCGCTAGCTTGCTTGTTACGCTAGTAAGACGAACTTGCCCGCCTC
Found at i:286742 original size:17 final size:17
Alignment explanation
Indices: 286720--286752 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
286710 CTCTAAGATG
286720 AGCAAGAAAACGTATGC
1 AGCAAGAAAACGTATGC
286737 AGCAAGAAAACGTATG
1 AGCAAGAAAACGTATG
286753 TGCGTGAGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.15, G:0.24, T:0.12
Consensus pattern (17 bp):
AGCAAGAAAACGTATGC
Left flanking sequence: Indices 286220 -- 286719
AAGTCCCCGGCGAGGAGAAAAAGACTTGAATTTCCCTCAACTCCTCACCAACGGGCTACAGGGGG
ATAAGTAGGTCTGAGACAAGCAGTTCAACCCAACAAGGAAGGGATTCGCGAAAGCCGTTGTGCGT
TAGTCACGCACAGCTTCTCTTTATCGAGATTTAGCCTAAACCCCACTCCTCTTTAGAGGTGCTCT
CATCTCAGACTTATTTCTATCTTTATCCTTCCTTTTTTCCAATGATGTTTAGCAATCGATAAGAT
CGGTCAAACGAAGGGCTTCCTTTTCTTTCCGATCAGATACATAAATCAAAGAAAGAGAAAAAACA
TCTCCGATGAGATCATACTCTAGGCATCCCTTTTGATCCGCTTCTTCTCATATATGTGCACTACT
CTCTAACTTCTCTTATATGTGCACTACTCTCTAATCTGATCGCTTGCCGTAGATGTTGATGTGAT
CAGGTGAGAGGTGTTGTAGAGAGAACAGAAAGAAGCTCTAAGATG
Right flanking sequence: Indices 286753 -- 287252
TGCGTGAGCAAGGAAACGGCTGTGCGGGAGCTACTGAGCAAGGAAATGTATGCTAGCTCATCTCG
TTTCGCTAACGCTACACTCGTTCTACGCTAGCTACATATACAGTTCTTCCGCGCTCCATCCGTTG
CTTGTTGACTACGACCCGACATAAATGCCAGTGGGTGCTATGTAGGCTCATTGGTCCCGCCGCTT
TGTTGATTGAAAAGCTATGTCAAAGCGCTTCCTCTCCCTGCCTCTTAGTGGCCATTTCTCTACAT
ATATATGATATGATAAGGACACGACTCTCTATATATGATAATTGGTTGAAGTAAGCTAATTCTCT
AAGCTCGCTAGTCATCTACTATCGCTAGCTTGCTTGTTACGCTAGTAAGACGAACTTGCCCGCCT
CTTTGGTCGAGAAGTTCCCTTTACTAGTCTCTTATGTGCTTTCTTGTAGCGATAGTACTGAACTC
TAGGAGTGGACGAGCGGTAGTGAGAGAGAGGGGCATGCATCTATC
Found at i:286776 original size:22 final size:22
Alignment explanation
Indices: 286737--286783 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
286727 AAACGTATGC
* *
286737 AGCAAGAAAACGTATGTGCGTG
1 AGCAAGAAAACGGATGTGCGGG
* *
286759 AGCAAGGAAACGGCTGTGCGGG
1 AGCAAGAAAACGGATGTGCGGG
286781 AGC
1 AGC
286784 TACTGAGCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.17, G:0.38, T:0.13
Consensus pattern (22 bp):
AGCAAGAAAACGGATGTGCGGG
Left flanking sequence: Indices 286237 -- 286736
AAAAAGACTTGAATTTCCCTCAACTCCTCACCAACGGGCTACAGGGGGATAAGTAGGTCTGAGAC
AAGCAGTTCAACCCAACAAGGAAGGGATTCGCGAAAGCCGTTGTGCGTTAGTCACGCACAGCTTC
TCTTTATCGAGATTTAGCCTAAACCCCACTCCTCTTTAGAGGTGCTCTCATCTCAGACTTATTTC
TATCTTTATCCTTCCTTTTTTCCAATGATGTTTAGCAATCGATAAGATCGGTCAAACGAAGGGCT
TCCTTTTCTTTCCGATCAGATACATAAATCAAAGAAAGAGAAAAAACATCTCCGATGAGATCATA
CTCTAGGCATCCCTTTTGATCCGCTTCTTCTCATATATGTGCACTACTCTCTAACTTCTCTTATA
TGTGCACTACTCTCTAATCTGATCGCTTGCCGTAGATGTTGATGTGATCAGGTGAGAGGTGTTGT
AGAGAGAACAGAAAGAAGCTCTAAGATGAGCAAGAAAACGTATGC
Right flanking sequence: Indices 286784 -- 287283
TACTGAGCAAGGAAATGTATGCTAGCTCATCTCGTTTCGCTAACGCTACACTCGTTCTACGCTAG
CTACATATACAGTTCTTCCGCGCTCCATCCGTTGCTTGTTGACTACGACCCGACATAAATGCCAG
TGGGTGCTATGTAGGCTCATTGGTCCCGCCGCTTTGTTGATTGAAAAGCTATGTCAAAGCGCTTC
CTCTCCCTGCCTCTTAGTGGCCATTTCTCTACATATATATGATATGATAAGGACACGACTCTCTA
TATATGATAATTGGTTGAAGTAAGCTAATTCTCTAAGCTCGCTAGTCATCTACTATCGCTAGCTT
GCTTGTTACGCTAGTAAGACGAACTTGCCCGCCTCTTTGGTCGAGAAGTTCCCTTTACTAGTCTC
TTATGTGCTTTCTTGTAGCGATAGTACTGAACTCTAGGAGTGGACGAGCGGTAGTGAGAGAGAGG
GGCATGCATCTATCCACTTTGAGGCAGGAAGATAGGACTTCTTAT
Found at i:289917 original size:23 final size:23
Alignment explanation
Indices: 289890--289935 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
289880 TAGCCCTTTA
289890 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
289913 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
289936 CTAGGCGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 289390 -- 289889
TATGCATCCCCGGCTAAGCGCGGAGAAGGGAGGCGAAAGGATCGGGTAACGAGGTCGCACAATTA
GGATCCTGGTTATCGCCAGAGTCCTAGCTGCCTAGCATTTGCCCTTTAATGAAAATCATCTGAAT
CTTAGAAGCATCGGTCGGCCTCAAGAGCCTTTGTTTCCTCTTTGGATTGAGAAACTGAGTCTATA
TGACTCCGGAGATGCTCCATAAGTATGGTAAGTATGGCAATTCGGATCAGGGAAATGAGCTCCTG
GCTGGAATGGCCCATTTCACTACATCTATTGTTTTGGCCTTCGTAAATGGAGCGAGTGAAAGCCA
TTCAGAGGCGGACTATTGAAAGCAAAGTCAGGACGAGAAGGGAACAAGCAACTCCTGAGCGCGCT
AGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCAACAAGCAACGGTAGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 289936 -- 290435
CTAGGCGCATTACGATCTGCAGCTCGGTACCATATGAATTCATTCTCTCTGTACTTCTCTTTGTA
ATTGGGATATATGGCTGAGTGGACACGGACTAAGGCAGATGATTAATCCGTTGAGGATCAGGGAA
GAAAAGAAATAGAATAGGTCCAGGCCTTTACTTTAGTAGGTGGATTTGGTTATCATTTAGGTAGA
GATCTAAACTGACTTTCATCCCGCTAATGGTGATCGATAGACACTTTCCTCCCGAAAAGCGCTTT
GGCTACGTAACGTTAAGCTACGCGCTTAGGGTCGGTATTACGAGAAGGCGGCATGCCATACCAAC
CACTGCTCTTACCGCAAAGAAAGAGATGTAGTTTCGAAACTCAGTCATATTGGCTGGTGGCCCTT
CAAAATCTTCATTGACTGGAATCGCTTGACCAGCAGGCTGTCTTATACCTTGTATCGGATTATTA
ATCTCAATCATCCGGGGGAACGAATAGCAACCAGGATTGGATCTA
Found at i:300007 original size:19 final size:18
Alignment explanation
Indices: 299983--300027 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
299973 TTATTTCTTC
*
299983 TCTTCTTTCTATACGCTAT
1 TCTTCTATCTA-ACGCTAT
* *
300002 TCTTCTATCTAGCGCTTT
1 TCTTCTATCTAACGCTAT
300020 TCTTCTAT
1 TCTTCTAT
300028 TTTCTATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.13, C:0.27, G:0.07, T:0.53
Consensus pattern (18 bp):
TCTTCTATCTAACGCTAT
Left flanking sequence: Indices 299483 -- 299982
ACGAAGGTTACCGGGGTCTAGGTTTATGGATGGATTCAGTCAGCGCCAACTCAATCAATATCAAC
AACATGTCGTTACCGGTTAGGTTAGGCTTGGTTGATGACTTTGTCAGAAAAGAAAGTAGGGTTCG
GGGGTTCATTGATTAGTAAACCTCAGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGGT
TTGCCGGCCGATAAGATCTCTGAGATTGACCAGCCAGCTGGGTTGGTTTGGCTATTCCTTTCTAT
TGAAAAGGAGTCAGCTGTCTGCGCGAGTCACTTCTATTCTTTTAACTAGCTAGCCATATGAGAAC
AGAGACATAGAAATTCTTTTCTTACAGCTGCTAAAGGATACCGGACTGCGACCCGACACGAATGC
CAGTGGGCGCTATTGCAGTCACATTGGCCCTGCCGCTTTGTCGAACGGAATGCTATGTCAAAGCT
CAAACAAATTACCCATTTCTAATGAGACGACTCTTTTATTTCTTC
Right flanking sequence: Indices 300028 -- 300527
TTTCTATTTATATGGGAATCTTGTTAAGATTGAACATTGCCTTTCTGGTTCTATTCAACTTTGTT
TTTAAGATTATTCCAGTTATAGGATCAGGCTAAGAGAACGATAAGAGCATAAAGAGAGCCAAGTC
ATAGCGACTCTTATCATTAAGATTCGCTCTATTATGACAATACTTCTCACACTTTCGTTGACAAT
CTATGATACTTCATCCCGTGTCTTGCCCCGCAGTGATTTCGACTGGCCTTTCTTTCTACTCAAGA
GTAGGAGATCGAGTAGTGGATTCTCCCCTCGCCTTAACCCTCCGAGCAGCTGGCCTGTACTGGCG
GAGGGTTAAGGCGAGGAATGAATGGGATCGGATTGGATCAATAGCTTTGTGCTGATCTACGAACG
ACCCTTCTATTTTATTTGATTTCTACTTCTTCAAGTCTCCATCATCCCGATCTCTCTTTCCGGGT
TTGCCTGTCCAAAGAAAACAGAACCTCTTCGGCCTCAAACCAATC
Found at i:308562 original size:33 final size:33
Alignment explanation
Indices: 308524--308589 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
308514 AAGACCAAGC
308524 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
1 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
308557 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
1 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
308590 ATCGGTAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.45
Consensus pattern (33 bp):
CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
Left flanking sequence: Indices 308024 -- 308523
GGGGTTGGCTATTGTAGGAACTCCTGGTGTTGGAGACGAGTAGCTTGCTTACATATTTCCTCAGC
CTATACCAATGAATGGATTGCCACTGCGTCTGATTCGACTGTCTCCGTCGTGTTCCGCTGCCAAA
CTTCTTATTGATATGATATAAAACTAAGCGGAAGAAAGCAGTTTCAGTTTAGTAAGGACTGATGC
CCCTAGTTCACTATTGAACCTATTCCCCGAGGAAGAAAAGGCTGTCTCGCTTTCCTCTATCTTCT
GTTATGCTTGGCTCGGCTTCCGGTGCTTCCCCTTCCAATGTTGGGCTGTCTCTGCGGTGCCGGCT
CCCGTTTCTGTCTTAGCTAAGCAGGTTCATGATTGAAGCCGAGAATGGGCCTACAGGTGTAGTAC
CAGTGTCTGTTAATACGTGGGTTGTAAAGAGTCTTCCTTTCTCCCTTTCCTTAAGGATGATTTGT
GCTGGCTTTACCAAAGTCTAGTCCAAGTGTATAGCAAGACCAAGC
Right flanking sequence: Indices 308590 -- 309089
ATCGGTAATCAACTTATTGATCTATAGGCATTTCACCGCTATTTAACACATTAGAACTCAGCGCT
CTACCGTTGCTTGTTGTGGAGCGAGTCTTAAATGAGTGATAAGGAGAAGTGCAACTACGAGAGAT
TCAGGAAGAAGCAACGAAGAAAGATGAAATCCAGTGAGATACTGGAGAAAGGTGGTCGTAACGAC
TGCGGGTCCATTCCATCTCATCCAGTCCAGACTCTCGCAGCGAAGATGGTGATTTGCCTCTTCCT
GTTCTTGACAGGCTAGTGACTCCACTGCTACCCACTCGGAGTCGACTATTGATCCGTCGCCCGAG
CCCGTTGGCGTTTCGTCCTTGCCTGAGGTACGTTGTTCTTATTTGTGACACCCATATGGTTTGTG
TCTGACCCAGCATAGTGCTTTTCTTGCCATTGTTCATTCTTCTTTGAAGCCGCAAAATGATAGTG
AGGCAGCAAGGATCCCTCAGTGGCAGCAGGCCATATCTATCTGAG
Found at i:330082 original size:18 final size:21
Alignment explanation
Indices: 330044--330083 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
330034 CCCTCGGAGA
330044 AAGAAGTAAGAAACTTCTAAG
1 AAGAAGTAAGAAACTTCTAAG
330065 AAGAA-TAA-AAACTT-TAAG
1 AAGAAGTAAGAAACTTCTAAG
330083 A
1 A
330084 GATAGGGCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 6 0.32
20 3 0.16
21 5 0.26
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.20
Consensus pattern (21 bp):
AAGAAGTAAGAAACTTCTAAG
Left flanking sequence: Indices 329544 -- 330043
CCCCCTCCAAATCAGAAAGGTGGTCAGAACATAAGCTGATTACCAGGGATTGTCAAAGAATTGGA
AAGGTTCTCGGAGAACTTCAAGCCCAACGACGCATAGAGAAGCAGCTGGGAGAACCAAGCCTCCA
ACAAAAGATCGAGGCACTTCGAGTTTGAAGAAAGGGTTTGCTCTCTAAACCCTAAAGCCTTCTGG
GAAAGGCACCGATGGGAAGTCGAGCTTCCATGACTATCTCTCTGTCAAAATGAGAAGAATCAGAA
AAGGAAGCAGGTGAACCCTCTATCGCTCCCTCACTATCAGAGTTAGGGGAACTCGAAGGGGAAAT
TGGTGAACTTTCTGAAATAGCTTTGACAGCTTCTCTACTTGAATCCAATGATGACGCTTTAGATA
ATAAAGAGATGGCTCCTCAGATGGAGAATGGATCCTTTTCGAAAACAAAGATGCAAAAAAAGGAG
AGAAAATGCTCTATTATATCTCAGGCTGCTTCTAACCCTCGGAGA
Right flanking sequence: Indices 330084 -- 330583
GATAGGGCGAAAAGTTGGTGCCAGACGAACTACTAGAGCAACCACCACGATTCCCGGTGGTGCTC
GAAGAGTTCATGCCACAAAAATGGAAGTCCGACCAAAGCCAAGACTCTTCAGAAGAGCAAGGCCG
AAGTAAAGACCTTCCGGAGGAAGAAGCACTCTTCTGGGCGCCCTGCCTAACCATTACGACAATAC
CAGAGGAACATAAATCCGAAGAGGAAGTGACAGGACCTTGGGTGGTATCAGAAGGTTAAGAGGGA
CAAGCTCCCATAGTATTCAAGTCAGCTGGATATGAGGAGCTACATCTTGGGGCGACACAAACAAA
GGGTTCTTTCTCCGACATACGAACCAACGATTCAAGAGATGGACTCCCCACTCTGAACACCACCG
GACTACTACCGGTACCTGTCCACCGACAATGAAAATAAGGATGGGCAGGAATCCGCGGAATACAT
CCCGACTACACCTCTAGAGCACCAAGGATCACCGGAATACGTTCC
Found at i:335454 original size:23 final size:23
Alignment explanation
Indices: 335427--335495 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
335417 TAGCCCTTTA
335427 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
335450 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
335473 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
335496 GCCGTTGCGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 334927 -- 335426
CCTTTGTAAGATGTGCTTCTTGACAGATACGATAGTAAGGGTAGGACTTAGACAGACTTCCTTCT
CTTTCTTCTCTCTAATGCTCACTAGTGGGTAGGCTTCATAACCACCACCCTCATCTCTGTCCCGA
GTCTACTTCCCCTTCAAGTGCCTATAGCCTATATCTGAATCATTCATTCCCGTAGCAGAGCTGTA
CACCTCTTCTTTCCATGCTTTATCTGACTCTTGTTAGCTACTCATTAGCTAGCAAGTCCGCAATG
CTCTATGCTCTGTCTCCTAATAAGCGTACTACCAACAAGCAACGGATGAGCGCTAACGCGCGAAA
GCCCCAATTCAATAAACGTAAGGTGCTAACGCCTTTATATATATAGGGCGTTTTCTTGCTGCCTA
GCGCGAAAGCCCCAATTCAATAAACGTAAGGTGCGTTAGCCAACAAGCAACGGTAGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 335496 -- 335995
GCCGTTGCGCGTTAGCCTTTATATATATAAATAGAATATATAGGGCGTTTTCTTGCTGGTAAAAT
TGCCTCACTTCAATACGGTGCATTCACTTAAGATCGGTTACTCTTTTTAGGCCAAGCTCTTCATC
GTACATGTTTTGTGTCCGTTCTCTTCGTCCCCCTCTTTGGAGAGTGCCTCGCTCTCTCAACTCGT
AACTCCTAACTCCTAACTCCTTTCAGCTCCATAAGTAAGTGACTAAGTCCGTTCCTTTCTGCCCT
ATCTTTGGATAGTGCCTCACTCACTGATCTGATTCCGGTTTGTTTAGGGTCTGACTCTTGGTCCT
AACTCGTGTCTTTAACTCAACTACTAACTCGCCCCTCGAGTCCTATCAGGGCTGTTCCTATCATC
CCTTCCCTTCTGCCGAGCTTCCATGCGATAGCTTATCCTAACCAATATCTCACTTAGTGCCTTAC
TGACTCTCAACAGAGAGGAATTCCCGTTAACAGCTCAAGGTCAAT
Found at i:337610 original size:12 final size:12
Alignment explanation
Indices: 337593--337618 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
337583 ACAGGCTAAT
337593 GGAACAAGCAAC
1 GGAACAAGCAAC
337605 GGAACAAGCAAC
1 GGAACAAGCAAC
337617 GG
1 GG
337619 TAGAGCAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.31, T:0.00
Consensus pattern (12 bp):
GGAACAAGCAAC
Left flanking sequence: Indices 337093 -- 337592
AATAGGCATTATCCGTTGGTAGGCAATTCTTATAGCAAGCATTGGCGCTCACCCGTTGCTTTGTT
CCGTTGCTTGTTCTGTTGAGCGGACAATGGAACCAGGCCCCGCCGACTGAGGCGAGCTGCAGCGA
GGCAGCATGAAACAAGATAGCGCAACTAGGTACTGAAGTAGCTCGACCTACGCCTCTTGAAAGCT
GCAATCGCGGTGCGCACTGTCTTGCTCCCCAGGTAGTTTGGGAGTGCTGATAGGGCCCGTGAAAG
ACGTTTAGAGTGGGCGTAATAAATGCCCCTATCTCATTCATTGAGAGCTTCTTGCTAGTCAACCA
CATGTAGCTCACAGCTAGGTTCACTTGATTAGGCCGACTGGCGAACAAGTATACTGCTGTATTTC
ACCTTGTAGGCTTCAATCTTGTTAGTTTACCTCTTCCTACCCTAAAAGCAGCTAATGCCAAGTCG
TAATAAGGCAGCGTCGCAAGGGAAAGGTTTCACCGACAGGCTAAT
Right flanking sequence: Indices 337619 -- 338118
TAGAGCAACAAGCAACTCCTGAGCAACAAGCAACGGGTGAGCGCGCTAGCGCGAAAGCCCCATTC
AATAAACGTAAGGTGCGTTAGTCACGCGTTTAAGCTAACGAATTGCGTTTTCTTGCTGCTATATA
GGGCGTTTTCTTGCTGCTATATAGGGCGTTTTCTTGCTGCTAGAAAGCCTAAGCGTTAGGAACAA
GCAAGGCCTGCGATTCATTAGTTGCGGGCTACCGCGAAAGCCCCAATTCGTTAGCTTAAAAAAGA
GCGGTTAGCCGCCGCAACTAATGAATCTAGGGTTTAAGCTAACGAATTGCGTTTTCTTGATAGAA
TGGCTCAGAATCCATATAGAGAGAAAGGCGCCTCTTAGAGAGTAAGCTTCCCAAAGCGCTCTAAT
CTATTGATTGCACACGTGAGTAGGAATCGGATCTCAGAAACTTAGCTTTCACGGCACGAAAGCAG
AAGAATCCCAAAGCTCAAGTCTGAGTCTGAATTCAATGATAAAGA
Found at i:337630 original size:18 final size:17
Alignment explanation
Indices: 337607--337660 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 17
337597 CAAGCAACGG
337607 AACAAGCAACGGTAGAGC
1 AACAAGCAACGGT-GAGC
**
337625 AACAAGCAACTCCTGAGC
1 AACAAGCAAC-GGTGAGC
337643 AACAAGCAACGGGTGAGC
1 AACAAGCAAC-GGTGAGC
337661 GCGCTAGCGC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 29 0.97
19 1 0.03
ACGTcount: A:0.41, C:0.26, G:0.26, T:0.07
Consensus pattern (17 bp):
AACAAGCAACGGTGAGC
Left flanking sequence: Indices 337107 -- 337606
GTTGGTAGGCAATTCTTATAGCAAGCATTGGCGCTCACCCGTTGCTTTGTTCCGTTGCTTGTTCT
GTTGAGCGGACAATGGAACCAGGCCCCGCCGACTGAGGCGAGCTGCAGCGAGGCAGCATGAAACA
AGATAGCGCAACTAGGTACTGAAGTAGCTCGACCTACGCCTCTTGAAAGCTGCAATCGCGGTGCG
CACTGTCTTGCTCCCCAGGTAGTTTGGGAGTGCTGATAGGGCCCGTGAAAGACGTTTAGAGTGGG
CGTAATAAATGCCCCTATCTCATTCATTGAGAGCTTCTTGCTAGTCAACCACATGTAGCTCACAG
CTAGGTTCACTTGATTAGGCCGACTGGCGAACAAGTATACTGCTGTATTTCACCTTGTAGGCTTC
AATCTTGTTAGTTTACCTCTTCCTACCCTAAAAGCAGCTAATGCCAAGTCGTAATAAGGCAGCGT
CGCAAGGGAAAGGTTTCACCGACAGGCTAATGGAACAAGCAACGG
Right flanking sequence: Indices 337661 -- 338160
GCGCTAGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGTCACGCGTTTAAGCTAACGAA
TTGCGTTTTCTTGCTGCTATATAGGGCGTTTTCTTGCTGCTATATAGGGCGTTTTCTTGCTGCTA
GAAAGCCTAAGCGTTAGGAACAAGCAAGGCCTGCGATTCATTAGTTGCGGGCTACCGCGAAAGCC
CCAATTCGTTAGCTTAAAAAAGAGCGGTTAGCCGCCGCAACTAATGAATCTAGGGTTTAAGCTAA
CGAATTGCGTTTTCTTGATAGAATGGCTCAGAATCCATATAGAGAGAAAGGCGCCTCTTAGAGAG
TAAGCTTCCCAAAGCGCTCTAATCTATTGATTGCACACGTGAGTAGGAATCGGATCTCAGAAACT
TAGCTTTCACGGCACGAAAGCAGAAGAATCCCAAAGCTCAAGTCTGAGTCTGAATTCAATGATAA
AGAAAAGGGTTTAGTTCCTTATCTATAAGCATACTCACTCAAGAC
Found at i:337754 original size:23 final size:23
Alignment explanation
Indices: 337728--337790 Score: 126
Period size: 23 Copynumber: 2.7 Consensus size: 23
337718 CTAACGAATT
337728 GCGTTTTCTTGCTGCTATATAGG
1 GCGTTTTCTTGCTGCTATATAGG
337751 GCGTTTTCTTGCTGCTATATAGG
1 GCGTTTTCTTGCTGCTATATAGG
337774 GCGTTTTCTTGCTGCTA
1 GCGTTTTCTTGCTGCTA
337791 GAAAGCCTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.11, C:0.19, G:0.25, T:0.44
Consensus pattern (23 bp):
GCGTTTTCTTGCTGCTATATAGG
Left flanking sequence: Indices 337228 -- 337727
CATGAAACAAGATAGCGCAACTAGGTACTGAAGTAGCTCGACCTACGCCTCTTGAAAGCTGCAAT
CGCGGTGCGCACTGTCTTGCTCCCCAGGTAGTTTGGGAGTGCTGATAGGGCCCGTGAAAGACGTT
TAGAGTGGGCGTAATAAATGCCCCTATCTCATTCATTGAGAGCTTCTTGCTAGTCAACCACATGT
AGCTCACAGCTAGGTTCACTTGATTAGGCCGACTGGCGAACAAGTATACTGCTGTATTTCACCTT
GTAGGCTTCAATCTTGTTAGTTTACCTCTTCCTACCCTAAAAGCAGCTAATGCCAAGTCGTAATA
AGGCAGCGTCGCAAGGGAAAGGTTTCACCGACAGGCTAATGGAACAAGCAACGGAACAAGCAACG
GTAGAGCAACAAGCAACTCCTGAGCAACAAGCAACGGGTGAGCGCGCTAGCGCGAAAGCCCCATT
CAATAAACGTAAGGTGCGTTAGTCACGCGTTTAAGCTAACGAATT
Right flanking sequence: Indices 337791 -- 338290
GAAAGCCTAAGCGTTAGGAACAAGCAAGGCCTGCGATTCATTAGTTGCGGGCTACCGCGAAAGCC
CCAATTCGTTAGCTTAAAAAAGAGCGGTTAGCCGCCGCAACTAATGAATCTAGGGTTTAAGCTAA
CGAATTGCGTTTTCTTGATAGAATGGCTCAGAATCCATATAGAGAGAAAGGCGCCTCTTAGAGAG
TAAGCTTCCCAAAGCGCTCTAATCTATTGATTGCACACGTGAGTAGGAATCGGATCTCAGAAACT
TAGCTTTCACGGCACGAAAGCAGAAGAATCCCAAAGCTCAAGTCTGAGTCTGAATTCAATGATAA
AGAAAAGGGTTTAGTTCCTTATCTATAAGCATACTCACTCAAGACTCAAGAATCGAGTGGTTTCA
TTCGAACCGGCCCTTTTGCAATTGCAACATATGAGTTCGCTTACTACGAGCCCAAAAGCGATCGT
TCAAATGGTTCGGTATGACGAATCTAGAGACTCTGGGATTGGAAA
Found at i:341007 original size:39 final size:39
Alignment explanation
Indices: 340953--341031 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
340943 CGATTTTCTA
*
340953 TTCACTCATGATCTGGCCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
340992 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
341031 T
1 T
341032 GAAGGATGGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 340453 -- 340952
CCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCCATTGGTCCTAGTA
TCATAGGCGACCGAACGGCCGCCCCCCCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCCGCTGGAACTGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 341032 -- 341531
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTGGAAGATGGTGCAACATCG
AATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAAGCGAAGTC
AAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTTTGTGG
TTGAGTCAGCTCCGAGATGAGAACGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTATATAAG
GTCGGGAGAGGCTCCCGATTTCTGGTTTGCTTAGAACCTGCGCCCCTAACAGTAAGGGCTTGAAA
GCAGCAAACGGAGGAGCATTCTTTTAGGTGTAGTTCCGTCAGGCTCCGTCTGTCCGCCTTTCCTT
TAGCCGGATGGTCACTCGTCGATAAATTAAACCTCGACCTCCTGAACCACTCTGTCTAGAGCTTC
CCAGTCAACCTGGTATCCCGATCACTCACTCTATTCAAAAGCAAG
Found at i:343820 original size:30 final size:30
Alignment explanation
Indices: 343779--343835 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
343769 CTTATATATA
*
343779 TAAGGTTGTTTACTCGCTTACTCGTTAGAG
1 TAAGGTAGTTTACTCGCTTACTCGTTAGAG
* *
343809 TAAGGTAGTTTACTTGCTTACTTGTTA
1 TAAGGTAGTTTACTCGCTTACTCGTTA
343836 AGGAAAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (30 bp):
TAAGGTAGTTTACTCGCTTACTCGTTAGAG
Left flanking sequence: Indices 343279 -- 343778
CTTGAGCAGTGATTCCAGGCAGGACTTTTCCATGAGCAACAATTCCTCACAAGGTTTGAAACCTT
AGTAGCTACCGGCTGGGCAGTAACCTCTTCAATGTCGACTCATCTGAAGTCAATTCAGATTCAAA
GCAGTTGTCAGCTCCCTCAAGTGAGTTACTCGCAAGGTTTGAAACTCTATCAAAAGGGTGGAAGT
CACCTTTTCCTAATCTGCTTTAGCTACAAGGGTAATCGTGGAAGCCGGGATCCTCTACTTAATTC
CCGGAAGTGACAGAACTCTCCTTTCTTTCAATTTCGTATCTAGTTGAAACGGTAGCCTTGCTCAC
TCACTTTCTTTTGAGTTCGAAAAGAGCTAATTCGAATCTCGATCTCTGGAATCGAAACCAAGACC
AACGAGCCCTCGGTCAAGCGAAAGACTTACTACTTTGAATTGAGGATCACTAGAATCCGAAGCTC
TTTCAAGTCCTCTGGGCACAAAGGTTGTTTACTTGCTTATATATA
Right flanking sequence: Indices 343836 -- 344335
AGGAAAGATTACGACTCTTTCCGATAGATAACCAAAGAGCAGACAGGAGCAAGCCAGAGACCTAT
TCCATATGAGCTAGCTAGCCAATGAGATGAGCTACCCATTGAGGGAGCTTAAACCGATGTCCCTA
TGTGCCAGCCGTTACCTTCCTTTCAGATAGGTCCTTCCTTGCGTACTATACTTATAGAATTCCAG
TTTCAATAAACGCTTTTGCATTTGAAGGGACCTATCGTGACCCCCCGTAAACTCGCGATTTAGCA
AATAAAAAGGGCCATGAAGAACGTTTTATATAAACCGGGATGAGCTAAGCTAAACAGAAAATCGA
TTCGCTAAACAGATGCGAGAGTTCACGGATGACCGATCGATACAGTACGAGAGATTCCCCCGGAA
GTCTTTCAAAAAAGGAATGAGCGCTCTGCCCCTTCGAAGACGCACGGGAGAGATTCACCAAACTA
GGGACATATTCCGGATGACAGCTCGACCGATTAAAGCGATCGATT
Found at i:364303 original size:13 final size:13
Alignment explanation
Indices: 364285--364312 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
364275 GTAGGCTCCG
364285 TTCTGCTTTCTTC
1 TTCTGCTTTCTTC
364298 TTCTGCTTTCTTC
1 TTCTGCTTTCTTC
364311 TT
1 TT
364313 AGTAGGCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.29, G:0.07, T:0.64
Consensus pattern (13 bp):
TTCTGCTTTCTTC
Left flanking sequence: Indices 363785 -- 364284
AAGACAAAGGGGAAGGTAAGGATAGCATGACTGGTTGCGGGTCCTGGATGTTCCATTGGAATAGG
GTTAGGACAGAGGCATTTCAGAGACAGGAAGATTAGCGCACTGAAACGTGTTGGATTTGAGCGCT
TCCTCAGAGTTGGAGGAAGATAGAACCAAAGACGACCATGGTGCTTACCTCGAAGGAAAGCAGGC
TTGACAGGCCCGAGTCTTCTCCTTCCTGGTACTTTTGAATAAGGCAAGGCCTTTACCTATTCCCT
ATCACAACAACTTTCAGTAGAGGAACGAAGTTGCTCGACTAAAAGGAGAGGAATTATTCTCAAAA
AAAAGAAGATCCGGCTCCTCAGCTAATTTCACTCACTTTCAAGCTTTCAAGAGGTATGAACTCTA
ATAAGGCATTCATGAGCTTACCTGTAACCTGTAACTGGACTGACCTCGCCTTCCCCTAACTCTCC
TCTTACCAGCTCTTCCAGGATCCGATTCCTTCTCAGTAGGCTCCG
Right flanking sequence: Indices 364313 -- 364812
AGTAGGCTCGAGAGTAGTTGGGTTCAGTCAGGGGAAAGCTTTCATAATCACTCTTAGTCTTAGCG
ACTTCACTCGTTGGTTCAACAAAAAGAGTACTTTTTATTCGTAAATAAGGAGTAGTTCTTCGTGT
CGTGGTGGAAGCCATTCAATCGTCATCTGATAGAGGCTCTGTGAATCTGTGCCTTTGAACAGGAT
AAGGGGAAAGATAAAAGAGCTTTGCCAAAAGGGTACGTACGCGAGAGGCGCGAGCGAATGAATTC
GATTCAATCCAAAGGGTAGGGATCTATAGGTAGAGAAGATATTCCGGGAAAATGAAACTACGTCC
ATGGAAGAGAAGAAAATGACAGAAATGACCCAGGAAGGGTAGGTGGGTGGGGAAGGCTAAGCAAT
CATCTCGTAGGGAATTTTCTAACAATCACCAACGGGCTTCCTTTCTATCAAGCCAACAGGTCCCA
TTTCTGACTAGCTCGCATATCCTGGTTCTAAAAATCCCCCGTCCG
Found at i:375228 original size:64 final size:64
Alignment explanation
Indices: 375149--375269 Score: 242
Period size: 64 Copynumber: 1.9 Consensus size: 64
375139 TGCTTTACTT
375149 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCC
1 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCC
375213 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGC
1 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGC
375270 TAACGCCTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.36, C:0.26, G:0.25, T:0.13
Consensus pattern (64 bp):
AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCC
Left flanking sequence: Indices 374649 -- 375148
GCTCGTAGTACCTGCTAGCGCAGCTTTGCAGTGGAAGGGAAGGAGCCTAAATCGACCCCCTTCTT
TCTTTTTATTCAAAGACACAAAAGCAGTAAGAAAAGATTGGACTCTCGGATGAGACTAAGCAGCT
ACCGACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAACCCTATCTAAAGTGGAG
CCTAGTTTAAGCTTTCATTAAAATCATAGAAAAAAAAACAAAAACCACTAGTAGGGATATGGATG
GACTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAGAACAGGAGAAGAGTACGCGCGCTAGCGCG
CTACAACTAGCAGCCAGCTCCGAGATGAGAACGCGGAACATTCCCCTTCCACCTTCGCCTTTGAC
TATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGAGATCTTTTAGAACCTGCGCGT
CATAAATAGGGCGCGGAACTATAAAGAATGAAAGCTGCTTTACTT
Right flanking sequence: Indices 375270 -- 375769
TAACGCCTTTATATATATAGGGCGTTTTCTTGCTTATATATAGGGCGTTTTCTTGCTTAGGTGTA
GTGCTAACTTGAAGTATGCTTCTTCCCCTTGAAGTCTAATTCAGAACTTGACTAAGCCCCGCGAA
GTAGTTTGCTGGCTAGCGCGCTAGCGCGCAACAACTAGCACTTTGAAACCGTTGCTTGCTGCATG
GATTCTTTAGATCTAAAGAATCCATGCTTCCCCCGGAGCGAGACTCTATCCAGATCTAAAAATGG
AAGAACGAGCTAGGCGGCCGGCGGGCAAAGAAAGGGGGCGGGCGGGGCCTTGGCGAGACGTTCTT
CTTTCGAAGCGTTTTGCCAAAAGAGCGAGGGCGCCCTTCTGGGGTGGGAGCGTTTCCTTTCAAAT
GACAACTGCCTCTTCCTGCTGCGGGGGCGTTGCACGAAACCAAACCGCCCCCCGCCCGATCAAGT
ACCAGTTGCTTCGCTGGTAGGCCCACTTAGGTTAGGAGGGCATTG
Found at i:375310 original size:23 final size:23
Alignment explanation
Indices: 375281--375328 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
375271 AACGCCTTTA
375281 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
375304 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
375327 TA
1 TA
375329 GGTGTAGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 374781 -- 375280
CGACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCGAAAACCCTATCTAAAGTGGAGCC
TAGTTTAAGCTTTCATTAAAATCATAGAAAAAAAAACAAAAACCACTAGTAGGGATATGGATGGA
CTCTCGCTCAGTAAAGAGAGTTGTAGATTCGTAGAACAGGAGAAGAGTACGCGCGCTAGCGCGCT
ACAACTAGCAGCCAGCTCCGAGATGAGAACGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTA
TATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGAGATCTTTTAGAACCTGCGCGTCA
TAAATAGGGCGCGGAACTATAAAGAATGAAAGCTGCTTTACTTAACAAGCAACGGATGAGCGCTA
ACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCAACAAGCAACGGATGAGCGCTAA
CGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCTTTA
Right flanking sequence: Indices 375329 -- 375828
GGTGTAGTGCTAACTTGAAGTATGCTTCTTCCCCTTGAAGTCTAATTCAGAACTTGACTAAGCCC
CGCGAAGTAGTTTGCTGGCTAGCGCGCTAGCGCGCAACAACTAGCACTTTGAAACCGTTGCTTGC
TGCATGGATTCTTTAGATCTAAAGAATCCATGCTTCCCCCGGAGCGAGACTCTATCCAGATCTAA
AAATGGAAGAACGAGCTAGGCGGCCGGCGGGCAAAGAAAGGGGGCGGGCGGGGCCTTGGCGAGAC
GTTCTTCTTTCGAAGCGTTTTGCCAAAAGAGCGAGGGCGCCCTTCTGGGGTGGGAGCGTTTCCTT
TCAAATGACAACTGCCTCTTCCTGCTGCGGGGGCGTTGCACGAAACCAAACCGCCCCCCGCCCGA
TCAAGTACCAGTTGCTTCGCTGGTAGGCCCACTTAGGTTAGGAGGGCATTGCCCCTCAGTTCTTA
CCAACCTCCGGTGTGTAATCGACATGTTGCTAGCTTATTATCGGT
Found at i:376434 original size:12 final size:12
Alignment explanation
Indices: 376417--376446 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
376407 CCCGTCGACC
376417 ACGACGACTGAA
1 ACGACGACTGAA
376429 ACGACGACTGAA
1 ACGACGACTGAA
376441 ACGACG
1 ACGACG
376447 CTACAAATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.40, C:0.27, G:0.27, T:0.07
Consensus pattern (12 bp):
ACGACGACTGAA
Left flanking sequence: Indices 375917 -- 376416
CTGAACGTTAGGGAAGATAAGGGAAGACCACCTGAGCGAACCGACCGAGGGGACTTGACTTATCC
GAACCGAACGTTAGCGGCAAGCCGCTAACGCCTATCATGAGCAGCGTCGCTGCTTGATCGGCGGG
GAGGAGCATCTCAAAGTATGGGGCAAAGGATCAAGCGCTTTTACTTTGTCCCCCGGGATCCACCA
CAGGTTGGGTTTGAGAGCCGTGTGATGGGTTACTATCCAGCACGGTTCGGAGAGCACTTGTAGTC
TGCGCTGGTGAATGGAAGCCCCCCTATCAAGCAAGAAAGAAGCGGCTCTTCCCACGGCGGAGTCA
CCATTGACTCTATTTATTATTATGGTAAATCAGTGTATCAAGATGTCAATCTGAGATCTTTTTTC
GGTTCGATACGTCCACCTACGAGACTAACCTTTGGCTTTCGTCTCGGTAGGTGTATTATTATACA
TTTTCCCAAAAGAACATTCATTCATTTCTTTCTTCCCCGTCGACC
Right flanking sequence: Indices 376447 -- 376946
CTACAAATCCAGACCCGGAAAGAAGAAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCGATCG
GGTGTCTTCATTCAGGCGACGGTACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGAGGGCAGGG
AAAAGAGTCGAGTCGATCAGGCTCGACGACCGGGAGAAGCAAAACGAAATCCGGATTTGGCCGAA
AAAGAAGCAACGCTATGGATACCATGACCGATCACCATCGAGAAAGAAAAATCTTGCTAAATCAC
TTCAGGTCAGCGGGGCTTTCAAGCATCCGAAATACGCCGGGGTTGTAAATGATATAGCGTTCCTG
ATAGAAAATTACGACTCCTCCAGAAAAACGAAGTTATTCAAGTTCTTTTTCCCAAGGAAGTCCCG
CTCCGACGGCCCAACGAGTCATCTACTAAAAAGGACCCTCCCTGCAGTGCGTCCCTCCTTTAATT
ATTCGGTCATGCAATACTTATTGAATACAAAGAACAAAATGCATT
Found at i:399155 original size:22 final size:22
Alignment explanation
Indices: 399127--399181 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
399117 CTAACAACAC
399127 GAGGTGGTTCACCTGCTCGTTA
1 GAGGTGGTTCACCTGCTCGTTA
*
399149 GAGGTGGTTCACCTGCTTGTTA
1 GAGGTGGTTCACCTGCTCGTTA
*
399171 GAGGGGGTTCA
1 GAGGTGGTTCA
399182 GCTACTGACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.15, C:0.18, G:0.36, T:0.31
Consensus pattern (22 bp):
GAGGTGGTTCACCTGCTCGTTA
Left flanking sequence: Indices 398627 -- 399126
GTTCGCAACTTGAGGAAAGGTTTTCTCATTAGCTCGACCGGAAGAGCATGGAAGAGCGGTCTAAT
CTTGCTCTTAACTCGAGTCAAGGGGAAAAGATAGGGAGAGCGCTTGATTCTCTCATAACTCGATG
AATGGGTTCCCTTTAGTTCGACCGTAAAAGCAGGTCAATAGCCTAACATCTTGTCTTAACTCGCG
GATTGTGTCCAGGCCCGGCACGTCCAAAGCGCGAGGTCAAAGGTAGGCAAAGAAGACCGAGCAAG
ATCCGTCCAGTAGAAAGGGCTGGAGGGAAGAGCGCCATCTCCTCGGACAAGGTTGGCAACCCTTG
TAATCGATGCTCTTCCCGTTCCCTCTGGCTTGTGGGTTAGTCACTCCATCCGTCGAAGGTGAAAG
AGAAAATCGATATTGTCAGGGAAGTAGAGCGAGGTGTCTCCCCTCACCTAATACCCGCTACTCAG
GGTTGAAAGTAGCACAATCGGTCCATGAGAGCGAACTAACAACAC
Right flanking sequence: Indices 399182 -- 399681
GCTACTGACCGATAGGTCAGGGGTTTAGCTACTGGCTTGTTTAAGCCAGGCCAGGGGAGAAGGCA
GCGAAGGCTAGAAGAAAGAAGGAAGAGAAGAAGCAGCATGACAGAATTTGGGTGATAGTGGATCG
ACTGACCAAGTCAGCACATTTCTTGCCAGTACGGTCTACTAACACGGTGGAAGAGTTGGCGGCGG
TCTATGTGGATGAAGTGGTGAGATTGTCGTCTAAGACCTTTAAGTCTTGTTCTATGGACGATTGA
CACGGATTGAGCCGTTGCCATAAGGTATGTCACTTGAAAAGGAGGCTTCCAGCTTCGATGGAATT
GCTTCGAAGGGCTTACCTCATATCAGTCTGTTCCATAAATTCTACAACTGGATAAATAATCCTAT
TGATGTATTGACTGAACCAAAGGGCGTGTGGCAGCATCTCACTCGTGCTCAGCTGTATGATCATG
GATTTCTTTTTCAGGTGAGTGTAGCTCGGCTAGGGCCGCGTAGTG
Found at i:410000 original size:23 final size:23
Alignment explanation
Indices: 409973--410041 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
409963 TAGCCCTTTA
409973 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
409996 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
410019 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
410042 GGAGTGGAGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 409473 -- 409972
AGAGAAGCTATACTATAGCCTTGTCCCACTCCTTATTCTACGGGAGATATGGAAAGAGAGGTGTA
GGAGAAGATATGAGCCTAATTACAAGGTGGAGGAGCATCAGAAGAACTCTATTATCTAAAGGGTC
AGATTTATAGCAAGCAGAATTGGGTAGTGATCCGAAAATTCTCTCAGTAATGTTCTGCAGTTAGA
TGCTGGCCAAGTAGAGTACCATAGAGCATTGCATAGAACTCTGTCCAGTCTTACCTCTGTGTGCC
TTCTTCCTTGTCGACCATTAGACCATGTGTATTCAGCCCCCATCTGTGTCCATATGAATAAGATC
TGAAACGGGATAAAACGTCCAGTTCTTCATATGAAACGCTAAAAGAAAGTAAGCCCAATCATGAA
AGAGTCAATCTTATCCTGATCGCTTGCCATCGATGTTGTGCAACAAACAACGGTAGAGCGCCCTA
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 410042 -- 410541
GGAGTGGAGAACGGAAGTTTCATGTAGTTCCTTCCGTCAGGCCCCCTTACTGTTAGGGGCGCACT
TCCGTTTTCTACGCTGGCTGTTATGTTAGTTGTAGCGCGCTAGCGCGCCTTCCCTCCTTCTCTCA
CTTCGGAAAGATTTGGAAGTCTTTTCTTATGATGACCTGGTCGAGAGAGTACGATACATCGGTGT
AAAAGATTGAGTGGGATCTGTGAGGTTGGTTATAGTAAGGCCTGGCCTGAAGTGCGCGGCTTACG
AAAAGGTAAGCGGTTCGGTTGGTTTACTTTGCCCCAATTTTTGCTTTTTCTGAATCTGAATCTAA
TCCCATTTTTATTTTCCGCGGGATCTCTGTTTCCCAGCCACTAAGGTTCCGTTCGGTCCTCTTCC
CCATGGTTATGGTATATGAACGTGAGAGCAGAGCAGGAAGTTCTAGCATAAAGAATCCTTCTATT
CCAATAGGCCGAGTGAACTGCATGTGTCCTGCTAGAGGAATAAGG
Found at i:411994 original size:15 final size:16
Alignment explanation
Indices: 411974--412003 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
411964 CTCAGTCAGG
411974 AAGCAG-AAAGCCGTC
1 AAGCAGTAAAGCCGTC
411989 AAGCAGTAAAGCCGT
1 AAGCAGTAAAGCCGT
412004 ACAGTAGCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.23, G:0.27, T:0.10
Consensus pattern (16 bp):
AAGCAGTAAAGCCGTC
Left flanking sequence: Indices 411474 -- 411973
GACGACTCGAATCCTTACTACGAGGATATCCCGCAAACAATCCATCTTAAGCAGCTGCTCATCAT
CGAAATCTCTTCATCAAAGAATCGAGTCCACAACACAAGCCTTCGAAAAGCAGCACTACAGAAAG
GGCAAGACCCCCCGGAAAGAGGCCCTCATTAGACACACTTCAAAGGAAATAAGAAAACAACTTTC
TAAAAACAAAAAACAAAAACGCGTATGTATATAATCATAATCAAAAACAAGAAAGAGTCTTCTAA
ACCTAAGACTCGCGGGGCAGAGAAGCAAGTCCAGTGAGAGAAGCAAAAGAAGCGAGCAGGAGAAG
TTACTAGCTATTGGGTTGGAAGAGCAGGGAGAAGAGTAGGAAAGGAAGTCAAAGAGTTTTCTTTT
TTTTCGGGAATGAAAAGAGCGGTTGGTACAGTGTTGGCGGGCGAAGGAAACCCATTTTTCTAGTA
GGCGCTTGGCTTGATTGAAAAGTCTGTTTTGCCTTCTCAGTCAGG
Right flanking sequence: Indices 412004 -- 412503
ACAGTAGCGAGCGAGAGCGAGGATTTCCATCTTTCTGGTAGCAATTGGCTTTCTAGTAGCAATTG
GCAGTCAGCAAGCACTTGCTTTGATTTACAAGTCTCTTTCTGTCTATCAGTTAGCAAGCGAGTAG
GGGAACCGTTCCTTCCGTTCAGTAAGGGAATACAAGCATTACGGGGATTTTTATAAAAGGAATAT
GAATATGACTCTTCCCAACTCAAGTCAAGCGAAGCGTAGTGAGGAAGGAGGGGAAGAACTACTAG
AGAAAGGCTAAGTGAAGTACTTCTCGGGACTTCTCTTTTCTTCTTTCAAATTCTTCTCCTCTTGC
TTATCACCGACTTTCCGAGCGTAGTCTGTAGTAGGGAGGGCCATTCTCGCAGGAGTTGGAGTAGG
AACATGACAAACCATTAGAATGCATTCTCGCAGGAAGTAGCCATGTTGCCTGCTTTCGTTCCTTT
CGTCTCGAAGGCCGGTTCAGTAAGAGTTCAAATCCTTCTAACTGG
Found at i:412057 original size:18 final size:18
Alignment explanation
Indices: 412034--412070 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
412024 GGATTTCCAT
*
412034 CTTTCTGGTAGCAATTGG
1 CTTTCTAGTAGCAATTGG
412052 CTTTCTAGTAGCAATTGG
1 CTTTCTAGTAGCAATTGG
412070 C
1 C
412071 AGTCAGCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (18 bp):
CTTTCTAGTAGCAATTGG
Left flanking sequence: Indices 411534 -- 412033
ATCATCGAAATCTCTTCATCAAAGAATCGAGTCCACAACACAAGCCTTCGAAAAGCAGCACTACA
GAAAGGGCAAGACCCCCCGGAAAGAGGCCCTCATTAGACACACTTCAAAGGAAATAAGAAAACAA
CTTTCTAAAAACAAAAAACAAAAACGCGTATGTATATAATCATAATCAAAAACAAGAAAGAGTCT
TCTAAACCTAAGACTCGCGGGGCAGAGAAGCAAGTCCAGTGAGAGAAGCAAAAGAAGCGAGCAGG
AGAAGTTACTAGCTATTGGGTTGGAAGAGCAGGGAGAAGAGTAGGAAAGGAAGTCAAAGAGTTTT
CTTTTTTTTCGGGAATGAAAAGAGCGGTTGGTACAGTGTTGGCGGGCGAAGGAAACCCATTTTTC
TAGTAGGCGCTTGGCTTGATTGAAAAGTCTGTTTTGCCTTCTCAGTCAGGAAGCAGAAAGCCGTC
AAGCAGTAAAGCCGTACAGTAGCGAGCGAGAGCGAGGATTTCCAT
Right flanking sequence: Indices 412071 -- 412570
AGTCAGCAAGCACTTGCTTTGATTTACAAGTCTCTTTCTGTCTATCAGTTAGCAAGCGAGTAGGG
GAACCGTTCCTTCCGTTCAGTAAGGGAATACAAGCATTACGGGGATTTTTATAAAAGGAATATGA
ATATGACTCTTCCCAACTCAAGTCAAGCGAAGCGTAGTGAGGAAGGAGGGGAAGAACTACTAGAG
AAAGGCTAAGTGAAGTACTTCTCGGGACTTCTCTTTTCTTCTTTCAAATTCTTCTCCTCTTGCTT
ATCACCGACTTTCCGAGCGTAGTCTGTAGTAGGGAGGGCCATTCTCGCAGGAGTTGGAGTAGGAA
CATGACAAACCATTAGAATGCATTCTCGCAGGAAGTAGCCATGTTGCCTGCTTTCGTTCCTTTCG
TCTCGAAGGCCGGTTCAGTAAGAGTTCAAATCCTTCTAACTGGCTAGTGCATTAAGGTGGCATGT
CTTGGGCCAGCAGTGAACGAAGTGTTAAAGTAGAGAAAGCTAGCG
Found at i:412904 original size:15 final size:15
Alignment explanation
Indices: 412863--412906 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 15
412853 GGGGGCCGCC
* *
412863 CCTTTGAAGCAAATG
1 CCTTAGAAGCTAATG
412878 CCTGTGAGAAGCTAATG
1 CCT-T-AGAAGCTAATG
412895 CCTTAGAAGCTA
1 CCTTAGAAGCTA
412907 CAGGACATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 11 0.44
16 2 0.08
17 12 0.48
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (15 bp):
CCTTAGAAGCTAATG
Left flanking sequence: Indices 412363 -- 412862
GGAGGGCCATTCTCGCAGGAGTTGGAGTAGGAACATGACAAACCATTAGAATGCATTCTCGCAGG
AAGTAGCCATGTTGCCTGCTTTCGTTCCTTTCGTCTCGAAGGCCGGTTCAGTAAGAGTTCAAATC
CTTCTAACTGGCTAGTGCATTAAGGTGGCATGTCTTGGGCCAGCAGTGAACGAAGTGTTAAAGTA
GAGAAAGCTAGCGTTCCGTACTCAGCCGGCCAAGCAAAACTCCAGCTAAGCTAATAGCTCTAATT
GTGGGGATATCTAAAAAAATATGCTCTCTCTCTCATCCACATCAAAATCTTTGTCAAGCTGGACC
CTGATGAGGGATGGGAATGGCTGAATCCGTCTGCCCTTTTCTTCGTACGCAAGTAAGCAACTGGC
CTTAGATTGTATCGAGCTACATGCCCTTCTCATAAGATGTTGTAAGCTACGGGCCATAAAATCTC
CGACGAAGCTTAAAGCAGGCATCAAGAGCTAAGAAGGGGGCCGCC
Right flanking sequence: Indices 412907 -- 413406
CAGGACATAGAAGCAGCACCTAAGAAGCAGGCCAACAAGCGGATTGAATCTTTTCCAGTCTATTT
TCTGGCGGCCTCGAAACAAAGGATTTTTATATTCCTTCTGCTTTGGACAAAATAAGTGGAGTGGA
CAGATGAGTTGAATAATACAAGGACAGATAAGCTAGGCGAGGTTCCCCCTTTGATATCTCCCAAC
CTAAAGGCTTTATTCAGAGGTGGGTCTTTGCCTACTCTTTCGATGAAGGGTGCACTACAAGACAA
TCGGTACCATAGGGATCAAATGGGGGATTTCGTCGATATTGAGTCGACTATAAACTACTCATCTT
GCTTTGAACCGTCGTTGTGTATGGGAAAGAGGGGTTCGTTCTACCTATGCTTGGTTGGGAAAAGG
GTGAATGGTCGTCCCAAAAGGGACGGGAAAAAACCCACTAGAAAGAACGGGCCCAGGGTAGTCCA
CTTTATCCGTGACTCTGAGTACAAGATTTCCGGGATCAAGAAACG
Found at i:417158 original size:33 final size:33
Alignment explanation
Indices: 417116--417182 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
417106 AAGAGCCACC
417116 CAGATAGCTAAAGAAGCACTAACGATGTGCTAA
1 CAGATAGCTAAAGAAGCACTAACGATGTGCTAA
417149 CAGATAGCTAAAGAAGCACTAACGATGTGCTAA
1 CAGATAGCTAAAGAAGCACTAACGATGTGCTAA
417182 C
1 C
417183 GGTTCAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (33 bp):
CAGATAGCTAAAGAAGCACTAACGATGTGCTAA
Left flanking sequence: Indices 416616 -- 417115
AGGCGAGACGAGACCAAACTATTCTTTCTACGTACGAATCCCGAGTAAGTAAATACAAATCTCTT
ATCGGAAAGGCTGTAGACGTCTACTAGAACAGGTTGATATAGCCCGGCCATAAATGGATTTCATC
GGGGGCGCGGAAGCCAGCTAAGTTTCTTCCATCTGGGACCAGCAACGGCGCATCTCCAATCAGTA
AACAGCGCTGCATCTCACCGCTCATCCCTAACCCCAAAGCTCATCCTCCACGTTTTACTCCTAAT
GCAAAGACAGTGAGCCCCCATCCGATCAATTGCTTTTAGGTCGACCTACTATAGAATAGAATAGG
CTCCACTTGCGATCCGAAACGAAGGAAAGCAAGAAGATAGCCACATACGTAAAGAAAGTCTAAGA
TGATCTGCTTGCCGTTGACGTTGATGCAGATAGATTAGACTTCTCACAGAGGTACGAACGGATAC
AGCATAGAACGGAACGGGGCTGCCCTCAACCTCTAAAGAGCCACC
Right flanking sequence: Indices 417183 -- 417682
GGTTCAAAAGAGGATCGGAGAGTAGCTACCAGCAAGAAAACATATGCGCGTGAGTCAAGCACAAC
AGCACTCACTTGTCTAGCCATTTCAGATCACAGTTACCGGTCTAGGATAAGAGTCGCAAGTCTAG
CTCCAACCATGGATATGAAGTCATCTCCTGTCCCCTAAAAACTCTCTGACTTCTCCTAGATTGAA
TAAAGCTGAAAGAGTGCGCTGTCATGCCTGCTTCTGCCCGATACGGAGCAAACCTAGGCACAGAA
GGAACGGAGGCAAAGCAAACAAGCCAAGCTAACTACGGAACGGATGCCACTAGACGGAAGCCTAA
TAGGAGTCTCGCTTCAAGTGGTTGCTTTCTCTAGCTTCGAGTGAAAGAGATCGAATCGATCCTAG
CTTAAAGTAGTCCAACAGGACCGCTTACTGCTGAAAGTAGTAGTTGCTTGATGTAGCTGAAAGTC
GGACTGTTCAAACAGTAGCTTCTCATTCCAGTCGTACTACACCAG
Found at i:419232 original size:18 final size:18
Alignment explanation
Indices: 419205--419244 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
419195 GGAACGAACT
419205 CCAA-TCCATCATCAGAA
1 CCAACTCCATCATCAGAA
419222 CCAACTCCATCATCAGAA
1 CCAACTCCATCATCAGAA
*
419240 TCAAC
1 CCAAC
419245 GAATCTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.40, C:0.38, G:0.05, T:0.17
Consensus pattern (18 bp):
CCAACTCCATCATCAGAA
Left flanking sequence: Indices 418705 -- 419204
TCGATCCAGTACTCTAGACCGTTCATTTGCTATTTCTAACACAGGTGGTGACTAGAGCCTACTCC
TCTATACCGGAGGATTCATGATCTTCCTAACAGGATGTGATACGAAGGAGCAGCTTTGATGAGCT
TGAACTCCAAATCCTTGACGAGAGTCTCAGACTTGTTTACCTCACTTTCAGCTATGGATCGCTTC
ACTCTAGAATACGAGCTACTATCCCTTAGTTCGAATGCTTTTCTGCTGGATTTCTTTACGATCTG
CTGGGATGAGAGAAAGCAGCAATAGAGCGCCACTAAGCAAGGAATAAAAGACCCGCAAGCGAAGC
ACCATACATGCAAGGAAGCGTTAGCGACCGATCAATAAGCGAGGATGGGAGCCTACTAAGCACTT
TATTATGACTGGAAGCCGCTCTTTCTAGTGGTAAGTCGCTTTTGTAAGCAAGATTATAAGTCTAA
AAATAGTTCTCCTGGTGGTGACGGGTGATGAACCAGGAACGAACT
Right flanking sequence: Indices 419245 -- 419744
GAATCTATAATGGTTTCGATTAATTAGCGAAGAAAAGCCCAAGTCCTCGATTTCTTAGTTCCATT
CCGTCAGTCTTTGGTCGAGCTACTCTCTCTCTTCAATTGCATTTCCTTGCTTTCTTTGGGAATGA
GTTCTCCTTATGGGGCGAAGAAAAGCCCAAGACCTCGATCAAAGCTATCCCTGCTACTCCCGTTC
CTAATGGTAGCTAATCAGCTGACGAAAACTCATATCTATCTCTCTCGTCTGATCTCCCTATTAGT
CACTTCCCTCTATTTCTGCAAGATCCTTATTCCTTTATCCATTGTTCCCATCAATGGCTCAATCC
GATAGCCCAACTGTGAGTAGTGGTGGCTATTGAACCGATTCAAGTGAGTCAAGAACGATCTCATC
CCAGCAAGAAAACGTATGCGTGTGAAGCAAGAAAACGCCCTATATAGCAGCAAGAAAACGCCCTA
TATATATAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTT
Found at i:419686 original size:23 final size:23
Alignment explanation
Indices: 419660--419703 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
419650 ATGCGTGTGA
419660 AGCAAGAAAACGCCCTATATAGC
1 AGCAAGAAAACGCCCTATATAGC
419683 AGCAAGAAAACGCCCTATATA
1 AGCAAGAAAACGCCCTATATA
419704 TATAAAGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.25, G:0.16, T:0.14
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATAGC
Left flanking sequence: Indices 419160 -- 419659
AAATAGTTCTCCTGGTGGTGACGGGTGATGAACCAGGAACGAACTCCAATCCATCATCAGAACCA
ACTCCATCATCAGAATCAACGAATCTATAATGGTTTCGATTAATTAGCGAAGAAAAGCCCAAGTC
CTCGATTTCTTAGTTCCATTCCGTCAGTCTTTGGTCGAGCTACTCTCTCTCTTCAATTGCATTTC
CTTGCTTTCTTTGGGAATGAGTTCTCCTTATGGGGCGAAGAAAAGCCCAAGACCTCGATCAAAGC
TATCCCTGCTACTCCCGTTCCTAATGGTAGCTAATCAGCTGACGAAAACTCATATCTATCTCTCT
CGTCTGATCTCCCTATTAGTCACTTCCCTCTATTTCTGCAAGATCCTTATTCCTTTATCCATTGT
TCCCATCAATGGCTCAATCCGATAGCCCAACTGTGAGTAGTGGTGGCTATTGAACCGATTCAAGT
GAGTCAAGAACGATCTCATCCCAGCAAGAAAACGTATGCGTGTGA
Right flanking sequence: Indices 419704 -- 420203
TATAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTG
CTTGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAAGCGCTCATCCCTTGCT
TCTTGGCTCCGTTCTCCACACATATATGTCCGGATGCGATCGGATTAGAACAGAATAAGGCTTTG
AGAAGGGGATTGCGGAAGAACCTGTACTATTGGACGGAGGTTCACCATAGACGGACGATTTATCG
ATCGTACCAGAGATCTTGGAGAATCGGCGAGAATGAACAACTCTATGAGTCCGGAGAAGGAACAA
ACAATGAAGCTGGGGCTTGAACTTTCCATTGGAGGATTGAATCACCTCCCATGAGGGATAGGGGG
GAAGGAATCCATGAATGAAAAGGAAGATTCCCCCAATGGAGGAATGAATGGCATGGCAGGACAAG
CATAAGAAGAGGCCTCCTCCTTTCCCACCCCTTCTTCATTCTCTT
Found at i:425422 original size:42 final size:42
Alignment explanation
Indices: 425342--425423 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
425332 GACTAACGCA
* * *
425342 CAACGGCTTTCTAGCTAGGGCGCTCTACCGTTGTTTGTTGCG
1 CAACGGCTTTCGAGCTAGGGCGCTCTACAGTTGCTTGTTGCG
* *
425384 CAACGGCTTTCGCGCTAGGGCGCTC-AGGAGTTGCTTGTTG
1 CAACGGCTTTCGAGCTAGGGCGCTCTA-CAGTTGCTTGTTG
425424 GTAGTACGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.03
42 33 0.97
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (42 bp):
CAACGGCTTTCGAGCTAGGGCGCTCTACAGTTGCTTGTTGCG
Left flanking sequence: Indices 424842 -- 425341
GTCCTTAGTTCCTCGATCCATTCCGTTTTCATCGCTAAAAGTAAAAGAAGGAAACATTGCATTAG
GAAGGAGCTCCTCCCCGAAAATGCTCTTTAAGGTGGGGTACAGATGGAATGAAGGGTCCGAAGGA
GGTCCTCGGTCAGTATTCATCCCGTGGTATATATACGTTTGTGCACCTGCGCCGGTCTTGCTTCA
TCAGCTCGTTCTTCTTGTTTTCGTTTGGGCTGCCTTTCTTGTTTGGACTCTACCTTACCAAGTTT
GATTTGATGTGTGGTGCACGGATCGGCCTTGTTGCTCCTTGGTCAGCGAAGGGGGAATGCGGAAT
CTATAGGCGCGCTGGCTTCGGTTGCTCAATGAACCAGCTTGGAAGCAGCATTTGGTCCTTAAGCG
AAAGAATCTTTTTTTGCTCTGAAATGCCTATCCACCAAGAAAACTAGCGTTAGCGCAACGGCAGC
AAGAAAACGGCTGCAGCAAGAAAACGTATGTGCGTGACTAACGCA
Right flanking sequence: Indices 425424 -- 425923
GTAGTACGCTCAGGAGTTGCTTGTTCCTCGTGAATGGAACGATCGATCGAGCGATGTAATGACTG
CCATACTTCTCTAGGGGCGAGGTAACTGCCCCGGGAGGTGAATCTGAGTAGGCGGCTAAATCAGC
ACATATGTCCCAAACTACCGTAGATGAGGCAAGTCTAACTTCCCGAGAATGAAATCAGACAGATC
GTCAAATGGCGACGTATATAAAGAAGTGGCCGGTTCCTCACAAACGGAATTGCTTTCTCGAGTTG
CTGTTGCCGAAGCTGAGCTTGAAGAGCTTGTTCTCTCCACTCTTGCTGCTTTCTTTGCTATTGCT
TCTGTTGAATGGTTGAGGGATGAAGCCAGAACAGAGGCTATTGCGGACATCGGAAAGGCTTACCT
TTATGCCATGTCTTTGACGACATAAGCGTTACGCTCTTGACTCAAGAGATGGAATCCAATTACTT
AAATGGCTTTATTTGCTTAGTTGGGTCTGTAGTTCCATTCTCAGA
Found at i:432511 original size:17 final size:17
Alignment explanation
Indices: 432491--432523 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
432481 TAGTCACGCA
432491 CATACGTTTTCTTGCTG
1 CATACGTTTTCTTGCTG
432508 CATACGTTTTCTTGCT
1 CATACGTTTTCTTGCT
432524 TCACGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.15, T:0.48
Consensus pattern (17 bp):
CATACGTTTTCTTGCTG
Left flanking sequence: Indices 431991 -- 432490
CAGGGATCACTGATTAGTCGAATGAGCCCCTCCCTCTGGCCTATCATTCATTGGTCGACCCGGCT
GGTGGCTCCTGCATCTCCTGCGTCTCCATGGGGGCCCTTCCGCCAAGTTTGCTGCTAGGAGTCCC
TCTAGTCGAATCAATAATCAATAGAAGTCCCAATAGAAGTTGACTGACCTGGCTCTTCAATCGAC
GATCTACTGCTCCCTCTTAGTTGCGGATGCCCATGCTTTGATTCTAAACCCCTAGCCAGTGAGTG
CCCCAGGAAGATCGGAGTATTAAATTCCGTATTGTATTGAATTCCGTTCCAGCAAGAGCAATTCG
TTAGAACAAGCAACTCCTGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAAC
GCCAACAAGCAACTCAACAAGCAACGGTAGAGCGCCCTAGCGCGAAAGCCGTTGCGCAACAAGCA
ACGGTTTCAAGCCTAGCGCGAAAGCCGTTGTGCGTTAGTCACGCA
Right flanking sequence: Indices 432524 -- 433023
TCACGCTCATACGTTTTCTTGCTGCCGTTAGTCACGCTCATACCTTTTATCGCCCTAACGCTAAA
GCGCTTTATTCTTGCTTCTGATCCAGTTTGTGCTATCTTAAGTATTACACCAATCATTTACAAGC
TATAAAGAGTGCGAGTGAGTATTACACCAAGAATTGACAAGCTAAAGAGAGTGTGAGATAAGAGT
GATTACCCGAAAGCCTTGTTTGAGGAGTGAATCTATGGTGTGAAAAGCGAATTTCGATGAATAAT
AATAGCAGCAAGTAGACTAACTCATAGCTATAATCCTTCAATTCGCTACGATCTTTCTGTTCTGG
ATTCGAACCACCGGATCGCTTGGAAGCTGAAACGGATGTTGGAAAGAAAGAAGAGCGACAAGGTT
CAGTTCAGATTTGACTGTTTGCAGCAGTTGAATCATGCCTGTTTGATGAACAAACTAACTACCTT
GCGAAGCCCCCAATCACGCTGCCTGTGTGAACAAACCAACATGCT
Found at i:437057 original size:19 final size:19
Alignment explanation
Indices: 437033--437071 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
437023 GAGGTTCTTT
437033 ATCAATACCAGAACCAGGA
1 ATCAATACCAGAACCAGGA
437052 ATCAATACCAGAACCAGGA
1 ATCAATACCAGAACCAGGA
437071 A
1 A
437072 ATAGGATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.15, T:0.10
Consensus pattern (19 bp):
ATCAATACCAGAACCAGGA
Left flanking sequence: Indices 436533 -- 437032
TGCCTTACCACTTGGCGACATCCGCCCCACTCCACTTCTTAAATGACTGAAACTGGCCTTCCATT
ACAGTCGAGGTTGCCCGTGTTTTTGTCCTAAAACCACACCTACAGGCATCTCAGACGGTATTTAC
CAAATAAGTCCACTTCGCATATCTCATAGGTGTTAGAGGCGCTTTTATGCCTACTACTAGAGCTC
TTCTTTAGGTACGTACAGACCCAAACCGCGTATCTCTCTTCTAATCTCATATGGCACGACCCACA
TCGCATAGATTCCCAAAACAACCAGCACAAGCGATTCCTTTCATTACGGCATTTAAAGTCGCATC
TCATCGAATCTCAGATCTGAGGTGTCGCTAAGGAGAGGGCATTTACCTAGCATCTAGTCTAATCC
ATTCCATTCCAGTCGAGACAAGCCAACCTCGCATATCTCAAGATTTCCCATCTTTCGTGTCTCTA
AATAGTATGGGATTGTTCCCAACTAGAGGCGCTGAGAGGTTCTTT
Right flanking sequence: Indices 437072 -- 437571
ATAGGATTCAAGTGAAAGACATAAAAGGGGCATCTTCTGATCAATGGCTTCAACCCTGTATCCGA
GGCTGAAGTCTCTAATCAAAAAAACCTTTCGAAACCAACCACTCGCTAGTGATTTGCCATTGGTC
TTGTCTCTCAAGAGCCCGTGAGTTCTCTTTCTTTACTTAAGACACGTATACCTGGAGTAATGCCT
TTACCAGTCCCAAACAAAGAATCCTGACAAAGCATCGAATATCATGACCAAAACCCCTACAACAT
CGTTCTTGTCTCTCACTGAAAATGGGTATAGCAGGACTCGAACCTACATCTTTACCGTTATGAGC
GGTACGCTCTACCGACTGAGCTATACACCCTAGAGTCTCTAATCAAACATTGACGATCGATAGGA
ATTCCCAGATTGTTTGGTCGTGCACAACTAGAAGCATCACCAGTCGCATCACTTCTCTTCCATCA
CCGATAGAGCGATCAAAGCCATAAGGGTCTTTAGACACATCACCA
Found at i:475708 original size:18 final size:18
Alignment explanation
Indices: 475661--475714 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
475651 GCGCTAGCGC
*
475661 GCTCACCCGTTGCTTGTT
1 GCTCAGCCGTTGCTTGTT
**
475679 GCTCAGGAGTTGCTTGTT
1 GCTCAGCCGTTGCTTGTT
475697 GCTCTA-CCGTTGCTTGTT
1 GCTC-AGCCGTTGCTTGTT
475715 CCGTTGCTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 29 0.97
19 1 0.03
ACGTcount: A:0.07, C:0.26, G:0.26, T:0.41
Consensus pattern (18 bp):
GCTCAGCCGTTGCTTGTT
Left flanking sequence: Indices 475161 -- 475660
GAATCGAAAGCACGCCCCTAAGCCAGAAAGCGGTCAGTAGTCACTCTCCTTTAGCTTCACTCGTA
GGTATGATGAGACGGAAAGCCTGCGAGCGGAGGACGAAGCCTAGCCTAGCCACTATTGGGCTCTA
TAAGAGTTGCTGGCAGCAGTCAAGGGGAAGAGCCTGTTCCTGCGTGTTGCCTTTTCAATTGTTGT
ACCGATGGCTTTCTTTCCTGAGAGTGCTAACATGAAAGCTCGCTGGCTAAGAGTGGAGTCATCGC
CCAGCTTAGGGTACGGGACTAAAAAACAAATATAACAATTGATCGATCAGGAAAGCATCGGATAA
GCATGAAACTATCTGCGTAGCCTAATCGTTGATCACGAGTAAGATACCTTTTTTAATCCAATCAA
TGCGCAGAAGCATGAAAAGAATTCCATTCCAGCAAGAAAACGCCCTATATATATAAAGGGCGTGA
CTAACGCACCTTACGTTTATTGAATTGGGGCTTTCGCGCTAGCGC
Right flanking sequence: Indices 475715 -- 476214
CCGTTGCTTGTTCCATTAGCCTGTCGGTGAAACCTTTCCCTTGCGACGCTGCCTTATTACGACTT
GGCATTAGCTGCTTTTAGGGTAGGAAGAGGTAAACTAACAAGATTGAAGCCTACAAGGTGAAATA
CAGCAGTATACTTGTTCGCCAGTCGGCCTAATCAAGTGAACCTAGCTGTGAGCTACATGTGGTTG
ACTAGCAAGAAGCTCTCAATGAATGAGATAGGGGCATTTATTACGCCCACTCTAAACGTCTTTCA
CGGGCCCTATCAGCACTCCCAAACTACCTGGGGAGCAAGACAGTGCGCACCGCGATTGCAGCTTT
CAAGAGGCGTAGGTCGAGCTACTTCAGTACCTAGTTGCGCTATCTTGTTTCATGCTGCCTCGCTG
CAGCTCGCCTCAGTCGGCGGGGCCTGGTTCCATTGTCCGCTCAACAGAACAAGCAACGGAACAAA
GCAACGGGTGAGCGCCAATGCTTGCTATAAGAATTGCCTACCAAC
Found at i:475720 original size:12 final size:12
Alignment explanation
Indices: 475703--475728 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
475693 TGTTGCTCTA
475703 CCGTTGCTTGTT
1 CCGTTGCTTGTT
475715 CCGTTGCTTGTT
1 CCGTTGCTTGTT
475727 CC
1 CC
475729 ATTAGCCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.31, G:0.23, T:0.46
Consensus pattern (12 bp):
CCGTTGCTTGTT
Left flanking sequence: Indices 475203 -- 475702
ACTCTCCTTTAGCTTCACTCGTAGGTATGATGAGACGGAAAGCCTGCGAGCGGAGGACGAAGCCT
AGCCTAGCCACTATTGGGCTCTATAAGAGTTGCTGGCAGCAGTCAAGGGGAAGAGCCTGTTCCTG
CGTGTTGCCTTTTCAATTGTTGTACCGATGGCTTTCTTTCCTGAGAGTGCTAACATGAAAGCTCG
CTGGCTAAGAGTGGAGTCATCGCCCAGCTTAGGGTACGGGACTAAAAAACAAATATAACAATTGA
TCGATCAGGAAAGCATCGGATAAGCATGAAACTATCTGCGTAGCCTAATCGTTGATCACGAGTAA
GATACCTTTTTTAATCCAATCAATGCGCAGAAGCATGAAAAGAATTCCATTCCAGCAAGAAAACG
CCCTATATATATAAAGGGCGTGACTAACGCACCTTACGTTTATTGAATTGGGGCTTTCGCGCTAG
CGCGCTCACCCGTTGCTTGTTGCTCAGGAGTTGCTTGTTGCTCTA
Right flanking sequence: Indices 475729 -- 476228
ATTAGCCTGTCGGTGAAACCTTTCCCTTGCGACGCTGCCTTATTACGACTTGGCATTAGCTGCTT
TTAGGGTAGGAAGAGGTAAACTAACAAGATTGAAGCCTACAAGGTGAAATACAGCAGTATACTTG
TTCGCCAGTCGGCCTAATCAAGTGAACCTAGCTGTGAGCTACATGTGGTTGACTAGCAAGAAGCT
CTCAATGAATGAGATAGGGGCATTTATTACGCCCACTCTAAACGTCTTTCACGGGCCCTATCAGC
ACTCCCAAACTACCTGGGGAGCAAGACAGTGCGCACCGCGATTGCAGCTTTCAAGAGGCGTAGGT
CGAGCTACTTCAGTACCTAGTTGCGCTATCTTGTTTCATGCTGCCTCGCTGCAGCTCGCCTCAGT
CGGCGGGGCCTGGTTCCATTGTCCGCTCAACAGAACAAGCAACGGAACAAAGCAACGGGTGAGCG
CCAATGCTTGCTATAAGAATTGCCTACCAACGGATAATGCCTATT
Found at i:477853 original size:23 final size:23
Alignment explanation
Indices: 477826--477894 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
477816 GCGCAACGGC
477826 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
477849 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
477872 AGCAAGAAAACGCCCTATATATA
1 AGCAAGAAAACGCCCTATATATA
477895 TAAAGGGCTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.17
Consensus pattern (23 bp):
AGCAAGAAAACGCCCTATATATA
Left flanking sequence: Indices 477326 -- 477825
ATTGACCTTGAGCTGTTAACGGGAATTCCTCTCTGTTGAGAGTCAGTAAGGCACTAAGTGAGATA
TTGGTTAGGATAAGCTATCGCATGGAAGCTCGGCAGAAGGGAAGGGATGATAGGAACAGCCCTGA
TAGGACTCGAGGGGCGAGTTAGTAGTTGAGTTAAAGACACGAGTTAGGACCAAGAGTCAGACCCT
AAACAAACCGGAATCAGATCAGTGAGTGAGGCACTATCCAAAGATAGGGCAGAAAGGAACGGACT
TAGTCACTTACTTATGGAGCTGAAAGGAGTTAGGAGTTAGGAGTTACGAGTTGAGAGAGCGAGGC
ACTCTCCAAAGAGGGGGACGAAGAGAACGGACACAAAACATGTACGATGAAGAGCTTGGCCTAAA
AAGAGTAACCGATCTTAAGTGAATGCACCGTATTGAAGTGAGGCAATTTTACCAGCAAGAAAACG
CCCTATATATTCTATTTATATATATAAAGGCTAACGCGCAACGGC
Right flanking sequence: Indices 477895 -- 478394
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCT
TGTTGGCGTTAGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCAGGAGTTGCTT
GTTTAGATTCATTAGTTGCTAACGCGTATACTCTTGCTGGGTTGATATGAGAAAGGACTAGCCGA
CACTACATTCGAAGGCCCGGCACATGAACAGAGGTCGCCTGCTAATTCCCAAAGACGAATTCACA
CTCGAAGGCTAGTTTCCAAGGAGCAGGCGATAACATCCGAAGCACATCGACAACTGACCACAAGA
TGGCATGGGACGAATGAATCCAAGCAGTAGGACGACAGCAAAGAGTCATTGCAGGCCAGCTGCTG
GAGTGAGAGCCAGTAGACCACCCGACAGACGGGGAGAAAGGGAAAGGGCTATGTTTCCATTGACT
AAGTACAATTAAAGAACCCTGCAATCAAGAAAGTGGATAGGTTGT
Found at i:478022 original size:64 final size:64
Alignment explanation
Indices: 477907--478027 Score: 208
Period size: 64 Copynumber: 1.9 Consensus size: 64
477897 AAGGGCTAAC
*
477907 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACCGTTGCTTGTTGGCGTTA
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACAGTTGCTTGTTGGCGTTA
*
477971 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTC-AGGAGTTGCTTGTT
1 GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTA-CAGTTGCTTGTT
478028 TAGATTCATT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
63 1 0.02
64 53 0.98
ACGTcount: A:0.13, C:0.22, G:0.29, T:0.36
Consensus pattern (64 bp):
GCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCTACAGTTGCTTGTTGGCGTTA
Left flanking sequence: Indices 477407 -- 477906
ATCGCATGGAAGCTCGGCAGAAGGGAAGGGATGATAGGAACAGCCCTGATAGGACTCGAGGGGCG
AGTTAGTAGTTGAGTTAAAGACACGAGTTAGGACCAAGAGTCAGACCCTAAACAAACCGGAATCA
GATCAGTGAGTGAGGCACTATCCAAAGATAGGGCAGAAAGGAACGGACTTAGTCACTTACTTATG
GAGCTGAAAGGAGTTAGGAGTTAGGAGTTACGAGTTGAGAGAGCGAGGCACTCTCCAAAGAGGGG
GACGAAGAGAACGGACACAAAACATGTACGATGAAGAGCTTGGCCTAAAAAGAGTAACCGATCTT
AAGTGAATGCACCGTATTGAAGTGAGGCAATTTTACCAGCAAGAAAACGCCCTATATATTCTATT
TATATATATAAAGGCTAACGCGCAACGGCAGCAAGAAAACGCCCTATATATAAGCAAGAAAACGC
CCTATATATAAGCAAGAAAACGCCCTATATATATAAAGGGCTAAC
Right flanking sequence: Indices 478028 -- 478527
TAGATTCATTAGTTGCTAACGCGTATACTCTTGCTGGGTTGATATGAGAAAGGACTAGCCGACAC
TACATTCGAAGGCCCGGCACATGAACAGAGGTCGCCTGCTAATTCCCAAAGACGAATTCACACTC
GAAGGCTAGTTTCCAAGGAGCAGGCGATAACATCCGAAGCACATCGACAACTGACCACAAGATGG
CATGGGACGAATGAATCCAAGCAGTAGGACGACAGCAAAGAGTCATTGCAGGCCAGCTGCTGGAG
TGAGAGCCAGTAGACCACCCGACAGACGGGGAGAAAGGGAAAGGGCTATGTTTCCATTGACTAAG
TACAATTAAAGAACCCTGCAATCAAGAAAGTGGATAGGTTGTATGTTCGTTCCATGGAGGCTCGT
GGGAGTCCGTCAATGGGGGTAAGCACTTCCTAGCAAACCTCAGCCCCAACGCAGGATCAGCTGTA
ACCTCACCGTGGTCTGATCGAGAGTCACGCAGGTGAGAACGACGC
Found at i:496426 original size:26 final size:28
Alignment explanation
Indices: 496356--496429 Score: 109
Period size: 26 Copynumber: 2.8 Consensus size: 28
496346 ATCCGAACTA
496356 CCTATCCGGTGAGTTCACTACTTCCTAT
1 CCTATCCGGTGAGTTCACTACTTCCTAT
* *
496384 CCTGT-GGGTGAGTTCACTACTT-CT-T
1 CCTATCCGGTGAGTTCACTACTTCCTAT
496409 CCTATCCGGTGAGTTCACTAC
1 CCTATCCGGTGAGTTCACTAC
496430 CACTTGAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.12
26 16 0.39
27 16 0.39
28 4 0.10
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.35
Consensus pattern (28 bp):
CCTATCCGGTGAGTTCACTACTTCCTAT
Left flanking sequence: Indices 495856 -- 496355
GCAATTCTTGCAATAGAAGCACCATATACTGGTGAAACAAGGGGCATTCTGGCTTCTCTTCTAAG
ACATCCATTTGTCGAGGAAGGGAAGGCTGCTGCTGGATAGAGAGCTTTTGTAACAGTAAATTAGT
CGTTTGCCTGTTTTGCTCTTTACTAATAGCTTATTTTTTACCTTAGGATAGGACCAGTTGGTGAG
CCAAGCAGAAGCTGAATCTCGTATATGAAAGACCTGATAGAAGTAGAAGGAGATCAGATATTTAG
TCCCCAGAGGTTGAAAGAACAAAGCGGCAGTTCTAGAACTCATAGCTTCAGCCCTTCCTTAACTC
GTATAGCAGCATTAGAACTCAGGAGATGGAGATTAAGAACTAGACTTTTAAGGCCGAAAGAAGGG
GAAAGAAAGGTTTAGCTATTGGGCTAGCATCGATCTCCAGACCAGACTGAAGCTGCTTTCCATCG
TTTAGCTAATGATTGAGAAATACAACTTTCTTCCTATCCGAACTA
Right flanking sequence: Indices 496430 -- 496929
CACTTGAAGAACTTCTCATAGAAAGCGACTTTAGAACTCTCTTTGAGAGTAAGACTTACACTTGT
ACACGACTACCACTAGAATGAATATTTGCTGCATCAGGGAGTCTGATCTCTCCGGCCTGGAGTCC
CCTTCCCGATTCTTGACCCATGCGATGTGCGCCTTCGGGTTGTTCTCGGGTAGAGCTAACTCCTC
CTCCGCCTTCCCCACAGGATGGTTACTGCAAAAGAACTGACTGGCTCAAACGGGACATTCCGTAC
AGCGGCCACCTTATCTTTTCATTCTGCAGTGACCCCATACGTATAGCAATTCCGGGGAGGGAGCT
TCGGACATTCGACTACGGTTGCAGTGGTTTCGAACATCCTATTCTACGATGCGGCATGTGTGATA
TTAGAGTTGATATGTGAGCGAGGAGCTCTCAAAAGAGAGGTTCGATCGGAAGAAAGGAGAGCTAC
TTTAAGAACTGGTTACGGTTGTAGCTCTGTGGGAGTTGCAGCTAA
Found at i:508960 original size:26 final size:26
Alignment explanation
Indices: 508924--508988 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 26
508914 TGTTGTTATG
508924 ACACCAATCATTTACGAGTGAGTATT
1 ACACCAATCATTTACGAGTGAGTATT
508950 ACACCAATCATAATCATTTACGAGTGAGTATT
1 ACA-C---C--AATCATTTACGAGTGAGTATT
508982 ACACCAA
1 ACACCAA
508989 GAATTGACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
26 5 0.15
27 1 0.03
28 1 0.03
30 1 0.03
31 1 0.03
32 24 0.73
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (26 bp):
ACACCAATCATTTACGAGTGAGTATT
Left flanking sequence: Indices 508424 -- 508923
TAGCTTCTGCTATCTTTTTTTCAATTTGGATTTTTTATGCTCCTAATGTTTTGGGGCATCCCGAC
AATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACC
GATCCATGCCATTCTTCGTAGTATACCTGACAAATCGGGAGGTGTAGCCGCAATAGCACCAGTTT
CTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTATGTGCGTAGTTCAAGTTTTCGCCCG
ATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATCGCTTACTACTAGGTTGGATCGGATGTCA
ACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTCCTCCTTTCGTTTTCTTCTTGTTCTTTG
CCATAACGCCCATTCCGGGACGAGTTGGAAGAGGAATTCCTAATTCTTACACGGATGAGCCCTCT
AGCCCTGTAAGTCACACCTGATCAGTGAAAAAAAATGTTGTTATG
Right flanking sequence: Indices 508989 -- 509488
GAATTGACAAGCGGATGCGTTTTCTAGTTGGCTATGTTGATATAGCGAAAATATAATAAACTATA
GGGCTGGCTTAACTTTCAAGGGGGCTTTGTTCCCTCAACTCCCCGGAGCTTCCTTCCCCTCTTTC
GGCCACGAAAGAAAAAGAAAAAGAAGGGACGCTTTCGCTGACCAAAACACATGGTCTAAAGTCTT
AAAAACAGCTAACAACAGAGAGAGATATTCACTTAAAGAACTTTCCCTCCCGTGACCCGTACCAG
AAAGAGGTTTTATCACAGCACCTTAGTTTCCTAACAGCTTTACGGAACTTACCTTTAGAGCACGT
GAAGGAGTCAGAGGAGATAGAGCTTGACCCTCGAAAACAGAGCAGAAAGAAAAACTATCTGATCA
AAGCCGGAGATTTATTTTGTCGACTTGACTGAGAAAGCAACACTTTGAACTGCAACTAGAGGGGC
TTCGCACGCAACGAAATTCTCTTTTCTAAGTCTCCCAAGCTTACC
Found at i:511688 original size:23 final size:23
Alignment explanation
Indices: 511661--511729 Score: 138
Period size: 23 Copynumber: 3.0 Consensus size: 23
511651 TAGCCCTTTA
511661 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
511684 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
511707 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
511730 GCCGTTGCGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 511161 -- 511660
ACAACCTATCCACTTTCTTGATTGCAGGGTTCTTTAATTGTACTTAGTCAATGGAAACATAGCCC
TTTCCCTTTCTCCCCGTCTGTCGGGTGGTCTACTGGCTCTCACTCCAGCAGCTGGCCTGCAATGA
CTCTTTGCTGTCGTCCTACTGCTTGGATTCATTCGTCCCATGCCATCTTGTGGTCAGTTGTCGAT
GTGCTTCGGATGTTATCGCCTGCTCCTTGGAAACTAGCCTTCGAGTGTGAATTCGTCTTTGGGAA
TTAGCAGGCGACCTCTGTTCATGTGCCGGGCCTTCGAATGTAGTGTCGGCTAGTCCTTTCTCATA
TCAACCCAGCAAGAGTATACGCGTTAGCAACTAATGAATCTAAACAAGCAACTCCTGAGCGCTAA
CGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCAACAAGCAACGGTAGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 511730 -- 512229
GCCGTTGCGCGTTAGCCTTTATATATATAAATAGAATATATAGGGCGTTTTCTTGCTGGTAAAAT
TGCCTCACTTCAATACGGTGCATTCACTTAAGATCGGTTACTCTTTTTAGGCCAAGCTCTTCATC
GTACATGTTTTGTGTCCGTTCTCTTCGTCCCCCTCTTTGGAGAGTGCCTCGCTCTCTCAACTCGT
AACTCCTAACTCCTAACTCCTTTCAGCTCCATAAGTAAGTGACTAAGTCCGTTCCTTTCTGCCCT
ATCTTTGGATAGTGCCTCACTCACTGATCTGATTCCGGTTTGTTTAGGGTCTGACTCTTGGTCCT
AACTCGTGTCTTTAACTCAACTACTAACTCGCCCCTCGAGTCCTATCAGGGCTGTTCCTATCATC
CCTTCCCTTCTGCCGAGCTTCCATGCGATAGCTTATCCTAACCAATATCTCACTTAGTGCCTTAC
TGACTCTCAACAGAGAGGAATTCCCGTTAACAGCTCAAGGTCAAT
Found at i:513844 original size:12 final size:12
Alignment explanation
Indices: 513827--513852 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
513817 ACAGGCTAAT
513827 GGAACAAGCAAC
1 GGAACAAGCAAC
513839 GGAACAAGCAAC
1 GGAACAAGCAAC
513851 GG
1 GG
513853 TAGAGCAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.31, T:0.00
Consensus pattern (12 bp):
GGAACAAGCAAC
Left flanking sequence: Indices 513327 -- 513826
AATAGGCATTATCCGTTGGTAGGCAATTCTTATAGCAAGCATTGGCGCTCACCCGTTGCTTTGTT
CCGTTGCTTGTTCTGTTGAGCGGACAATGGAACCAGGCCCCGCCGACTGAGGCGAGCTGCAGCGA
GGCAGCATGAAACAAGATAGCGCAACTAGGTACTGAAGTAGCTCGACCTACGCCTCTTGAAAGCT
GCAATCGCGGTGCGCACTGTCTTGCTCCCCAGGTAGTTTGGGAGTGCTGATAGGGCCCGTGAAAG
ACGTTTAGAGTGGGCGTAATAAATGCCCCTATCTCATTCATTGAGAGCTTCTTGCTAGTCAACCA
CATGTAGCTCACAGCTAGGTTCACTTGATTAGGCCGACTGGCGAACAAGTATACTGCTGTATTTC
ACCTTGTAGGCTTCAATCTTGTTAGTTTACCTCTTCCTACCCTAAAAGCAGCTAATGCCAAGTCG
TAATAAGGCAGCGTCGCAAGGGAAAGGTTTCACCGACAGGCTAAT
Right flanking sequence: Indices 513853 -- 514352
TAGAGCAACAAGCAACTCCTGAGCAACAAGCAACGGGTGAGCGCGCTAGCGCGAAAGCCCCAATT
CAATAAACGTAAGGTGCGTTAGTCACGCCCTTTATATATATAGGGCGTTTTCTTGCTGGAATGGA
ATTCTTTTCATGCTTCTGCGCATTGATTGGATTAAAAAAGGTATCTTACTCGTGATCAACGATTA
GGCTACGCAGATAGTTTCATGCTTATCCGATGCTTTCCTGATCGATCAATTGTTATATTTGTTTT
TTAGTCCCGTACCCTAAGCTGGGCGATGACTCCACTCTTAGCCAGCGAGCTTTCATGTTAGCACT
CTCAGGAAAGAAAGCCATCGGTACAACAATTGAAAAGGCAACACGCAGGAACAGGCTCTTCCCCT
TGACTGCTGCCAGCAACTCTTATAGAGCCCAATAGTGGCTAGGCTAGGCTTCGTCCTCCGCTCGC
AGGCTTTCCGTCTCATCATACCTACGAGTGAAGCTAAAGGAGAGT
Found at i:513864 original size:18 final size:17
Alignment explanation
Indices: 513841--513894 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 17
513831 CAAGCAACGG
513841 AACAAGCAACGGTAGAGC
1 AACAAGCAACGGT-GAGC
**
513859 AACAAGCAACTCCTGAGC
1 AACAAGCAAC-GGTGAGC
513877 AACAAGCAACGGGTGAGC
1 AACAAGCAAC-GGTGAGC
513895 GCGCTAGCGC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 29 0.97
19 1 0.03
ACGTcount: A:0.41, C:0.26, G:0.26, T:0.07
Consensus pattern (17 bp):
AACAAGCAACGGTGAGC
Left flanking sequence: Indices 513341 -- 513840
GTTGGTAGGCAATTCTTATAGCAAGCATTGGCGCTCACCCGTTGCTTTGTTCCGTTGCTTGTTCT
GTTGAGCGGACAATGGAACCAGGCCCCGCCGACTGAGGCGAGCTGCAGCGAGGCAGCATGAAACA
AGATAGCGCAACTAGGTACTGAAGTAGCTCGACCTACGCCTCTTGAAAGCTGCAATCGCGGTGCG
CACTGTCTTGCTCCCCAGGTAGTTTGGGAGTGCTGATAGGGCCCGTGAAAGACGTTTAGAGTGGG
CGTAATAAATGCCCCTATCTCATTCATTGAGAGCTTCTTGCTAGTCAACCACATGTAGCTCACAG
CTAGGTTCACTTGATTAGGCCGACTGGCGAACAAGTATACTGCTGTATTTCACCTTGTAGGCTTC
AATCTTGTTAGTTTACCTCTTCCTACCCTAAAAGCAGCTAATGCCAAGTCGTAATAAGGCAGCGT
CGCAAGGGAAAGGTTTCACCGACAGGCTAATGGAACAAGCAACGG
Right flanking sequence: Indices 513895 -- 514394
GCGCTAGCGCGAAAGCCCCAATTCAATAAACGTAAGGTGCGTTAGTCACGCCCTTTATATATATA
GGGCGTTTTCTTGCTGGAATGGAATTCTTTTCATGCTTCTGCGCATTGATTGGATTAAAAAAGGT
ATCTTACTCGTGATCAACGATTAGGCTACGCAGATAGTTTCATGCTTATCCGATGCTTTCCTGAT
CGATCAATTGTTATATTTGTTTTTTAGTCCCGTACCCTAAGCTGGGCGATGACTCCACTCTTAGC
CAGCGAGCTTTCATGTTAGCACTCTCAGGAAAGAAAGCCATCGGTACAACAATTGAAAAGGCAAC
ACGCAGGAACAGGCTCTTCCCCTTGACTGCTGCCAGCAACTCTTATAGAGCCCAATAGTGGCTAG
GCTAGGCTTCGTCCTCCGCTCGCAGGCTTTCCGTCTCATCATACCTACGAGTGAAGCTAAAGGAG
AGTGACTACTGACCGCTTTCTGGCTTAGGGGCGTGCTTTCGATTC
Found at i:522022 original size:14 final size:14
Alignment explanation
Indices: 522005--522032 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
521995 AGCAGCCTTC
522005 TACCAAACAAGGGA
1 TACCAAACAAGGGA
522019 TACCAAACAAGGGA
1 TACCAAACAAGGGA
522033 AGTGACAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.21, T:0.07
Consensus pattern (14 bp):
TACCAAACAAGGGA
Left flanking sequence: Indices 521505 -- 522004
ATGCTGTTGCCCCTAACTAAAAAGATTTTAGATAATGTTGTCCAGTCTAACCAGGAAATGCTGAA
GAGCTTTCGAATGAAAATTCCTATCGTTATCAATCAGTCTTCTAGGCGGACTCCTAAAGCTAAGT
GAGAAGTGAAACGACAGATAATACAAAGTAATAGACTCAAAACGTGCTCTCGCTAGAAGGGAATC
TATCCCTATCCCTTGAACTAGCCGGGCAGTTTTCTGACCATAAAGAAGATTCTTGGCCGGGAGGT
GGAATTGAAGGTCCCAGAGAAAGAATGAAAGTGGGATCTAGCGATCGTGACGCGAACCCATTAAT
ATATCAAAGTATAACGAGGGGCATAATAAGCAAATAAAAGCGATAATAGAAGTGTTTCCTGCCCA
GCGGGCTGTCCTTTCATGTATGACCCTAGATATGATATAGAAGAGTTATGGGTTACCAATCTCAT
GCATATCCGGAGCGACTTGATGGTCGGCTTCTTGAAGCAGCCTTC
Right flanking sequence: Indices 522033 -- 522532
AGTGACAAGTCGGGATAGGAAAAGAAAAAAATATACCAATTAGCGATGGGTGAATTCACATACCG
AATAGTAGTAAGCGGAAAAGGACTAACGAATTAGCAGCCCTCTTGCTCCTTGCTTTCATCAAACC
ATGCCTCACTTGAGCGTCGAAAAGAAGAGTAAAAAGCTCTTCCATTGAGATGCACTTCGCTCAGA
GAAAGTAGCCGCCTTTACTGTCTTTTTTGCTCGGGAAGCTTCCCCTCACCTGAACATTTAATATA
AGGTATTTCATATCCCCGAACCACAAATCAAATACAAATAAGAGTATAAGGGCCTTTTAGACTCA
TGGCCGGTAACTTCGGGTCCCCTAATTCTTTTAAAGCCCTCTGATTCACCTAGGCGTTGGCCCAA
AAGAGAATATATATATAATAGGGGGTCATAAGCTGTTTTAGGTTGGTCAACTACGGCTTAGTATA
ACTCTTTCTTTAACAGCCGAGCCCCTTTGGAACTATCCTCTCTCT
Found at i:535880 original size:28 final size:28
Alignment explanation
Indices: 535840--535895 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
535830 TTGTTTTGTT
535840 CTAGCCGCTAACGCTTCCATATAATAAG
1 CTAGCCGCTAACGCTTCCATATAATAAG
535868 CTAGCCGCTAACGCTTCCATATAATAAG
1 CTAGCCGCTAACGCTTCCATATAATAAG
535896 ATAGAGGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CTAGCCGCTAACGCTTCCATATAATAAG
Left flanking sequence: Indices 535340 -- 535839
TACTTCCGGCCGGATAAAGCAGCCAGCCATCTCATTCATCTCTTTCTTCGCTCACCCACCAGTGG
ATAATCGATCACTTCCGTCAGCGGGTTCGCCAAGTACAAGTCCCTCTGCCTCTAACTCCGCATAT
AGTTTCCCATCTCCCAGTGGAGCCGACCCATCTACTTCTCTAAGACCAGTTCCCAGGGATCCAGA
TCAATATGCCTCGGTTAATTCAATTGTGTCAGCTATCGATCTAATGGTTTTCCATGTATCTCATC
CGAACCGAGAGCGTCAAAAGTGGGATAAGAACCACCAGGATTCTATTCCTTTGATCTATCTACTT
CATCCGAACCAAGTAGGTAGGCTCCATCTTATTATATTGATCCCTCAACTGTCCTGGGCCGTACC
CTGCAGAACAACACCTTCTCTTTCAGTGCTAGGCGAGGAAGCCTACCATCTATTCTATCTGCATC
TCAATTCATGAAATCCTCTGCTCCATACAACTCCCTTGTTTTGTT
Right flanking sequence: Indices 535896 -- 536395
ATAGAGGCCTTCATCCCACCCAGTAGCTGCAACATAAGCGGGTGCCAATGACCGGAACTCCCCAT
TTTGGGAACCATTGAACGCCGCCATCAACTCCTATCCGAATGGGCACCTGTTCTCCATTTATTTC
TTCCTCCTAGCGGGAAAGCGCCCTTCTTGATGTAGTTGCTTTTTAATCGAGATTGGCATTGCCTG
GCTCTTCTTTCTTTGAGCTAAGAATTAGATTGATTGCTAGAAGTAATAGAAGATAAAGGAATAGA
AAGAGGGGATCCCATTGAATCAGCTCGTGTGATAAGACCCTATGCAGTTAACTCGAAAGGGAAAT
GGAAATGAGTGACTCTCGGGTGAACCAATTGCTTCAAGATAGGATTTGCTTAGCTTTCTTTCTTC
CTACCCTTTCAGGACTCTGTCGATGGCATGCTTTCTTATAGTAAATAGGTTTGTTCAAGGACAAG
GACCGAATCGCTTCTTTTATCTTGAGAAATACCCGGAAACACAAT
Found at i:541447 original size:26 final size:26
Alignment explanation
Indices: 541417--541467 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
541407 GTAATTCATT
*
541417 TCATTTATTTACTATCTAGAACTATA
1 TCATTGATTTACTATCTAGAACTATA
541443 TCATTGATTTACTATCTAGAACTAT
1 TCATTGATTTACTATCTAGAACTAT
541468 CAAAAATGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (26 bp):
TCATTGATTTACTATCTAGAACTATA
Left flanking sequence: Indices 540917 -- 541416
TCCGTTAAACTTGCATTTACTCCATTCAGTGATTCAATATCATGGATTTTATAGCGAATTAGCAT
CTCCTTGACACCCGCCTTCAGAACATTAGGAGCCAACGGTGTTGAATTCGAACAATAGAGATTAG
AAAAAAGGTGTTCGATATTCCGGGTTGCACAACCACAACTCTCGACCTTCAGAAAGTAGAGCACG
GTGGCTTCGAAATCCTCAGGTCGAGCTTGTGCAAGGCAGTTGCGAACACACGCAACCCAGCTAGG
ACTTTGTGACGGAAATCTCAAATAGTTGTCCAGTAAGACAGAATTGGGAGATGGGTGGTCTATCG
TAGCAGCGGGAACCTGGCTTGCACTTGGCGAATCGTCACAAAAGGCGATGGTCGTAAAAGTGAGT
TCGCTTCTCATAGAGGCTCTTGTCGAGATTGGGTTTTCGGTGTACCGTACTGTATCAAATCATTT
CTTAAACAAAAATTCTGCATGCATAACATTTATATGTAATTCATT
Right flanking sequence: Indices 541468 -- 541967
CAAAAATGGAATCCTAATCGAAATAGATAATCTTTCTTTATGATGAAATCATTCTCTCCCCGAGC
TGCTGAACTAACGACTCTCTTAGAAAGTAGAATGACCAACTTTTACACGAATTTCCAAGTGGATG
AGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCGCGTGTTTATGGATTGAATTCGATTCAA
GCTGGGGAAATGGTGGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAA
TGTCGGTATTGTTGTCTTTGGAAGTGATACCGCTATTAAAGAAGGAGATCTTGTCAAGCGTACTG
GATCTATTGTTGATGTTCCTGCAGGAAAGGCAATGCTAGGCCGTGTGGTCGATGCGTTGGGAGTA
CCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAACGAAGACGTGTTGAAGTGAAAGCCCCGGG
GATTATTGAACGGAAATCCGTGCACGAGCCTATGCAAACAGGGTT
Found at i:544164 original size:19 final size:19
Alignment explanation
Indices: 544140--544176 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
544130 TGAAAACTTG
544140 CATTTCTAATAGTCTAAGC
1 CATTTCTAATAGTCTAAGC
544159 CATTTCTAATAGTCTAAG
1 CATTTCTAATAGTCTAAG
544177 TCATGCGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (19 bp):
CATTTCTAATAGTCTAAGC
Left flanking sequence: Indices 543640 -- 544139
TACGTTCGTCATTGGAAGTTAAGTTTGTTATGATTTGCTTTTACCTGGCTAACACAATTTTATCC
TGCTTTCTTGGGAACTGAGGTCCAGTTACCAGGTCCATCATTGGTGGACACATAGTGAAGTATCT
TTGCATCCTTCTCAGCAGTCCATAGGCCCCTCTTCACGTTTGATTTATCACAACAAGGCTCCCAT
CTCACTCAATGATGTAAATCTGGATCGAAATATCAATGATGTCTAGATACCTCTTCACAAGTATT
CTTGTGGGAGAAGGACAAGAAGAGGGAGATGGGGTTTGAACATTTAACAAGTGTGGAGGCAAGAA
AGGCATGAGGGTTCATTCCAATTATAGTGAAAATCAAAAAAATTTTTATAACAAAAAAATAAAGA
TTCACACTGGAACTAAAAAAAAAAGTGTGGATTCTTTTGATTGAAAAATCAAGAAATGCTTTCTG
TATGCAAGACTCAACTGAAAAAAAAGGCTACATTATGAAAACTTG
Right flanking sequence: Indices 544177 -- 544676
TCATGCGCCTACTTTACTTTATTCAGATCGAACACAGATGAAGCGGAATTGGGGCTCCGGTAGTC
TGCTTTTTGTTTCAAGGTGGTGTTGTTTGCTAAACTCAACATTATATGTAGTAACGAGATCAATA
ATTAATTGGTAGGCACCCGTCTTTCATTCATTATTTCCTGTGTTGGTTATAATCTCTGCACTTGA
GTACCAATCTAATGATGGTGACCACCTTGCACCTCATTTAACCTGATCGACGCCGGGTGATGCAC
GGATGTATATATGGGTAAGTAAGTAATGATTGGTTCGTTCCCAAATTCTTGGTTTGGAAGAAAGA
AATGGCCTAATTGATTGGATAAGATCACAAGGAAGGAATGGCTGCTTGAAGGTTACTAGTTGCTT
TAGGAGAGCACCTGTCCGGAAGGGGGAAGCTGCTTTAGGAGATAGACTTACCGGCTGCAACTTCT
TCCTCGACAGGCAGGCCTGATTCTGATGTGTTAAGCAACTGCACT
Found at i:570006 original size:12 final size:12
Alignment explanation
Indices: 569989--570014 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
569979 AGGTGCCGCT
569989 TTGCTTCCTTAA
1 TTGCTTCCTTAA
570001 TTGCTTCCTTAA
1 TTGCTTCCTTAA
570013 TT
1 TT
570015 TCCGAGTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (12 bp):
TTGCTTCCTTAA
Left flanking sequence: Indices 569489 -- 569988
ATAAAAGAAGAGAGAGTCCAATTCATACAGCTCCCAGACCCAGCAGACCCCGACCCCACTCCCAG
TATGACGACGCCCATATGACATTTCTATGGATTGTAGCGTCAGATCTAGTTCCTACTTTAGGCCA
CAGTTGACTCTTGTGAATGAAGTTCTTCATCAACAAACTATAGGCATTCTTGCAATAACCATATA
GTTGAGACATGAAAAGTGGATAATTCCATGCCTGGGTACCTGCCTACTTGCTGCGATACTCAAAT
AAGAAGGCCTCTGTTAGCTGGGCTTGCTCCTCTGCTAGATCTAGTTCGGAGTAGCCTTGTTCTTT
TCTTGCTTCTAGCCGTAGTGCAGTAAGAAACTAGCTAGCGTAGGCCCAGTCTCTCATAAGGGGCA
GTGTGCCTTTAAATCTTGCTTAATGATAACGATATCTCCCCTACTAAACTTGACCCTATACAGGA
TAATTCCTCCCTACCATTTGACTGGTTGACGAAAGAGGTGCCGCT
Right flanking sequence: Indices 570015 -- 570514
TCCGAGTTCGGCTAGGGCTGGTGTTGTTGAGTGAACTGCCCTACATTCAAGACCTGATGGAATTG
AGCAGCCAACCACTTGAGTTCCCGAACCGGGTCTAGCTAGGGATGTGGACGGAACGTAGGCCAAG
CAGTTTCACCAACAGCAAGATCACCACTCCTAGGTTCAATTGTCGAAGTGGTAAAGGCCATATCT
GTTTCCTATAATAATAATAAATACAATACAAGCAAGGGATGAGCAATCAAACTACTACGCAAACG
TTGGCCCGTAACAAGCTGCTTCTTTCTTTATAGGTAGGTAGAGTTACGAACTGAAGTTGAATGTA
GCGCTAAAGAAAGCCCTTGCGCTAAGGCCGGTGGTCGTAGATCAGCTAGCCCGCCCATAGTTTCT
TTCATTCCGTTACGGCAGCTGACTATAGGTTGTTCCGTCTAGCTTGTTCTTGCATCTGGCCGATG
GAAAGAATACAGAGGGGGGGGGAGTGAGAGGCCTGGCCTAGTGCG
Found at i:590753 original size:18 final size:19
Alignment explanation
Indices: 590723--590758 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
590713 TTCTTAAAGC
590723 AAGCTACGTAAGGGAGTGA
1 AAGCTACGTAAGGGAGTGA
*
590742 AAGCTA-GTAAGGTAGTG
1 AAGCTACGTAAGGGAGTG
590759 TGTGTTGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.36, C:0.08, G:0.36, T:0.19
Consensus pattern (19 bp):
AAGCTACGTAAGGGAGTGA
Left flanking sequence: Indices 590223 -- 590722
AGAAGAAAGAAGGGGTTGCGCACGAAGAAAACGATCTTTAGCAGACGGAATCGAGCAGACATGAT
CAATAATTAAAAAGAGGACAAGGGATGCTTGTTCGACCTTCGGGATAAACGCTCTTTGAATGGGT
TCTTTGACGGCTTTCTAGCTAGGGCGCTCTACCGTTGCTTGTTGCTCATGTATGTTTATAACAAG
ATAGGAGAGAAAAAGAATGTATTAGATCTGGTTGCTAGGCGCATGGTAGTTCCTGTAAGGCAAGA
TGGCTTCTATCGAAGAGCTAGGATAAGATCACTATCTTACCTTTAGGACAGTACTTATGATCGAA
TGACCCAATGTATCTTTCCTGAGTCTGCTACCTAGGAGAGATCAACAGCAGCATCGGGAATGCAT
ATCTAGGAGAATTGGTGGAAGCTCTTCTTCCGGACTCTTATCTTACATCCTATGGTTATCGTCCT
GTAGGTAAAGAGAGAAGAGCTAGGAAAGGGCCCTCTTCTTAAAGC
Right flanking sequence: Indices 590759 -- 591258
TGTGTTGGCTGTAAGCTACCGATGCTAGATTGCTGCTGTGAGTGATCGAATCAACATTCCTATAT
CAGTGAGAACTTCAAAGCCAAAATCCAGCTTTTTTCTCGAAGGTGGGCCTATTTCATTAGGTATC
CTTGATCTTTGAGACCCATTGGACTGGTCAAATGAAGCAATCAGCCGTGGAAGTCCTCCATTTTC
TTTCATACAAGGGCAATAGAACGGACTTTGTCTGTAATCAAAGGTCAGTGGTAGTCTAGTCGTTT
CCAAATAGGGAGAAAGCAGAGATCCCCTAAGCCGCTGATCCCGCTCTATGGGAATAATATTCCAA
AACAGGATCTTGATCTATGCCCTACTGGGCGGACTGATAATACAGATCGACTGGGTCCACTGTTA
CTGCCTAGCCGACCTAGAAAAAAAAGGCTTCCAGCGCCTCGAACTCCAAGAAGCAGTGGGAGGAC
CAGAGGAGGCAAGGGGCAGACAGGCAGAGCCATGGTAGCGAGGCG
Found at i:600242 original size:23 final size:24
Alignment explanation
Indices: 600215--600261 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
600205 GCGCAACGGC
600215 AGCAAG-AAAACGCCCTATATATA
1 AGCAAGAAAAACGCCCTATATATA
600238 AGCAAGAAAAACGCCCTATATATA
1 AGCAAGAAAAACGCCCTATATATA
600262 TAAAGGGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.49, C:0.21, G:0.13, T:0.17
Consensus pattern (24 bp):
AGCAAGAAAAACGCCCTATATATA
Left flanking sequence: Indices 599715 -- 600214
TCCCGCTCTGCCGGGTGAGTCGTCTCTGTAAGGTCAGTATTTACTAGCGATAGCATCGTTTAGCG
GGCCCATCTTTAGTCGGGATTCCATTTTTGGGTTAACCAACAGGCTCGAGGTAAGAACCAGGTGT
AAGAGCGGAGATAGCAGCTGATTGGTTGAGTGAACTGCATTCCTTTTCTTTTCAAATAGAAGTCT
CCGCAGCTGGAACGGGTTCACAGGAGTCAGCATCTCCAAGAGAAGTGCCTTATCCAGATCGAGTA
GACATAGCTTTGTTCTTAGTAGCTTTTTACTACCCCCACACGAGTATCACCGTGCGGATGTGCTC
CTGCCACACTTATTTGATATAAAAGAATCTACTCAGGGAGCAGCTCCAACGAAAGAAAGATCTCA
CTTATTGTCTAGGCGAGGCCGGTTCAAGTTCAAAGTCAAGCTATACTATACTCGGGTTGTCCCCA
TGAATGTGGTAAACAAGGTACTGGATGTGACTAACGCGCAACGGC
Right flanking sequence: Indices 600262 -- 600761
TAAAGGGCTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCGTTAGCGCTCATCCGTTGCT
TGTTGGCTAACGCTTAGGCTTTCGCGCGTTAGCGCTCATCCGTTGCTTGTTCCATCTTACCACTT
ATCCTATCATTTGTTCTTCTTCTTCTTCTTCTTTTCTGTATTATGCAAAACATGTGATCAGCTTT
TCTGTCTCTCTTTTGATTTAAAGTGCTTGCTGAGAAAACACTAAATTCAAGAAGGAAAAGGAAGC
TGATATGCCACAGAAGCTTCAAAGCGAAGACTTAAAAGAAGCTAAAGGTACTAAGACAAGACCAA
AGATGAAAAGGAGCCGCCCGAGCACCATCCCATTTAGTAGGGATGCTCTCACTCTCTTTCAGTAG
CGACTTCGCAGCTAACCCCTTCTTGCCGGAAGAAAGGAACAAAGAGCTTACTTCCACGCATACTT
CCTCCCAGCAATCATTCACTTACTATTAGAGCAAGCCTAAAGTTA
Found at i:608452 original size:15 final size:15
Alignment explanation
Indices: 608429--608458 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
608419 GATCCGGGAA
608429 AGCCCACTTAGTATT
1 AGCCCACTTAGTATT
*
608444 AGCCTACTTAGTATT
1 AGCCCACTTAGTATT
608459 GGTATATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (15 bp):
AGCCCACTTAGTATT
Left flanking sequence: Indices 607929 -- 608428
GAATTTCATTCTTTCGTGGATGGAACTACTTAATTGCCTATTCATTAAAACAAATTAGCGTTTAT
CTTGTTTTTCGAGAACACGAACCCATTGCAATCGCTGGAAATACTGGATCCACTAAAGAGGAGGA
ATTCCTTCCGAGCATCGACTCCTTGCCCGGAGCGGTGCTAGTTGATTTAGCATGGCTAACTCCAT
CCGGGTCTTCAGATATGTTCAAAGACTCGCCCTATATCCCACCCGCGGAAGTTCGGAATTCTTAG
TCAAGACCTCCTGTCCTCGGCTAGGTGGCAAGGGCTCCGTCGACCACAAATCCGTAATGATTGAT
AATCCAGAAGAGAAATCTGATGGGTTGATCACATATGTGCCACATGGTATTCATCTCTTAGAAGG
CGGGGGACAAACAACAGTGAATATGGCCAAGTGGTAAACTTTGTCTTTGCCAAAAGGAGAAGACG
CAAAGCCAGCTAGGAAGAAGTAAGTGAGTCGTTACGATCCGGGAA
Right flanking sequence: Indices 608459 -- 608958
GGTATATAATGTGGTGCACAGTAATACTACATATAAGTATAGCGGTCGACCCTTGCCTATTCAAC
TATTTTGAGTCATCGATCTCCTATCCTTCTCGATCCTTTGCTCCATCTTTTTTAAAGAGAGCAGT
GGTTGCCTAGACAGAAAGGCAGCCGGAAGCTGTTCCAACCCAAGGCGATGGTCTTAGCCGAATTA
AAGAGCGATGGCCTTAGTCAACAAGCAACGGATGAGCGCCTAGCGCGAAAGCCTAAGCGTTAGCG
CATACGTTTTCTTGCTGGGATGAACGGAATTCCGAACTTACCTTCCCTTTTTCTACCATCGATGG
ATCTAGCATTTCAGGCAATTGCAACTATATAAAGGGGAAAGGGATGATTAGTATCAGATAAGACA
AGGCCACTTCCCGCCCCTTCCATTAAAGACGATCCCCGGAATGAAGAGAATGCTGGGCTGGTGTT
GACTCGCGTTAGGAGTTACCAAGCCTAGAATCTTCGAGAGAATTA
Found at i:617675 original size:33 final size:33
Alignment explanation
Indices: 617637--617702 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
617627 AAGACCAAGC
617637 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
1 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
617670 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
1 CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
617703 ATCGGTAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.45
Consensus pattern (33 bp):
CTTCACTGTAAGGTATAGTTCGTGTTTCCTTCT
Left flanking sequence: Indices 617137 -- 617636
GGGGTTGGCTATTGTAGGAACTCCTGGTGTTGGAGACGAGTAGCTTGCTTACATATTTCCTCAGC
CTATACCAATGAATGGATTGCCACTGCGTCTGATTCGACTGTCTCCGTCGTGTTCCGCTGCCAAA
CTTCTTATTGATATGATATAAAACTAAGCGGAAGAAAGCAGTTTCAGTTTAGTAAGGACTGATGC
CCCTAGTTCACTATTGAACCTATTCCCCGAGGAAGAAAAGGCTGTCTCGCTTTCCTCTATCTTCT
GTTATGCTTGGCTCGGCTTCCGGTGCTTCCCCTTCCAATGTTGGGCTGTCTCTGCGGTGCCGGCT
CCCGTTTCTGTCTTAGCTAAGCAGGTTCATGATTGAAGCCGAGAATGGGCCTACAGGTGTAGTAC
CAGTGTCTGTTAATACGTGGGTTGTAAAGAGTCTTCCTTTCTCCCTTTCCTTAAGGATGATTTGT
GCTGGCTTTACCAAAGTCTAGTCCAAGTGTATAGCAAGACCAAGC
Right flanking sequence: Indices 617703 -- 618202
ATCGGTAATCAACTTATTGATCTATAGGCATTTCACCGCTATTTAACACATTAGAACTCAGCGCT
CTACCGTTGCTTGTTGTGGAGCGAGTCTTAAATGAGTGATAAGGAGAAGTGCAACTACGAGAGAT
TCAGGAAGAAGCAACGAAGAAAGATTCAATCCAGTGAGATTCGAGATAATCCCCATTCTTACACC
TAAATGGAGGCTAAAGGCGCATAGAATCCACTAATTAATTGGACAATTTCCGATTCACCCAACAG
ACCGGAGTCTGGCTTCGCTTTCAAGTCCTCAGGACACCTTGCCTGCTTATATACTACCCGTATAC
CGGGAAGGAGCGGATGAAGCAAAATGAATTAAGCTAAGCCCCGCTGCTGTTGATCGTACCAATGA
TCGGGAATTGACTAAAGCATAGTAAGGGTCTGCCGAAGAACCACATATGGTCGGAAATGCCCTGG
GGAACTTCCGTGTTCTCTTCCTTCTAAACTGAAATAGGTGACTGA
Found at i:639038 original size:18 final size:18
Alignment explanation
Indices: 639008--639044 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
638998 GCGCTAGCGC
639008 GCTCACCCGTTGCTTGTT
1 GCTCACCCGTTGCTTGTT
639026 GCTCATCCC-TTGCTTGTT
1 GCTCA-CCCGTTGCTTGTT
639044 G
1 G
639045 TAGTGGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.05, C:0.32, G:0.22, T:0.41
Consensus pattern (18 bp):
GCTCACCCGTTGCTTGTT
Left flanking sequence: Indices 638508 -- 639007
GAAATAAATACGTCTAAAGAAAGCCATGGAAGCTATTCTCAGGAAGCTTTTCTGAATAAATGGTG
AGAACCCAGCCTTCATCTATGGCTCTGTTCTAATGACTAACTAGGAGTCTCACCTTCTGCTCCGC
TACTTGTAACTGGCCGGCCTATAAGGGAGGTAGCGGAAGGAGCTTACAAGCTTGGACTAGATGTA
AAGAGATGGGCATCCCCATTAACGAAATCTAATCCACTTTTTATCCCCTACTTTCGTTATTCTTC
CCCGCCCTTTTAAGAGATAGGATAATGAAATACTTGCCAAGCTGTTAGCGGTCAATGCTGGGGTG
CAGTAGTGCTTTTTCTTCAGGCCTGGATAGCACTGTTTAGATGGTATGATAGTTCAAAAGGATTT
CGAAACAAAGGCAAGTTAGCTCCAAGTCATTACTCCATCACCGCAGCAAGAAAACGGCTTAAGTG
ACTAACGCACCTTACGTTTATTGAATGGGGCTTTCGCGCTAGCGC
Right flanking sequence: Indices 639045 -- 639544
TAGTGGTAATGTCTATAAGAGCTAAATGCGGCAAGGAATGTTGTTAAACAGGACGTAGTGGTGAA
AGGCCCGGAAATGCCTCTATCAGTAAGGGCTTTGTTCCAGCTTTCATTCGATTCATTTGTCTTAT
GGTATGGTCGGTTACAGCCCTCTTACAAGAGAACCCAGTGCTGGATAGCTGATTTTGAGCCTAGT
GCTTGGTTGGACAACATAGCCTACTGCTGTATAACCTACGGGACTGTCGTCTAACCTACTGTAGA
ATAACCTACTTCCAAGTAACCTAGTGCAAGCTAAGTTGTAGTCGTTGCAATAACCTACCGAACCT
ACTGGCGCTCTCCCGAACCAGGTTTAAGAGAGTGTGCTATAAGCTGTATAGGAAGTGAAGCTAGG
CTATGGGGCTATTGAGCTGGGCTATACCTGTGAGTGGGCGCAGCACGGAAGAATAAGCTAGGCGG
CGCTAGGCTATTCTAGACTGTTGATTCATATGTGTATAGAAGAGG
Found at i:648273 original size:23 final size:23
Alignment explanation
Indices: 648246--648315 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
648236 TAGCCCTTTA
648246 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
648269 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
648292 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
648315 T
1 T
648316 CACGCGCATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.17, C:0.13, G:0.21, T:0.49
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 647746 -- 648245
AGAGAAGCTATACTATAGCCTTGTCCCACTCCTTATTCTACGGGAGATATGGAAAGAGAGGTGTA
GGAGAAGATATGAGCCTAATTACAAGGTGGAGGAGCATCAGAAGAACTCTATTATCTAAAGGGTC
AGATTTATAGCAAGCAGAATTGGGTAGTGATCCGAAAATTCTCTCAGTAATGTTCTGCAGTTAGA
TGCTGGCCAAGTAGAGTACCATAGAGCATTGCATAGAACTCTGTCCAGTCTTACCTCTGTGTGCC
TTCTTCCTTGTCGACCATTAGACCATGTGTATTCAGCCCCCATCTGTGTCCATATGAATAAGATC
TGAAACGGGATAAAACGTCCAGTTCTTCATATGAAACGCTAAAAGAAAGTAAGCCCAATCATGAA
AGAGTCAATCTTATCCTGATCGCTTGCCATCGATGTTGTGCAACAAACAACGGTAGAGCGCCCTA
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 648316 -- 648815
CACGCGCATACGTTTTCTTGCTGCAGCCGTTTTCTTGCTGCGGTGATGGAGTAATGACTTGGAGC
TAACTTGCCTTTGTTTCGAAACGGAAGGGATACGAACGTCTCGCCTGTCCTAAGGCGGTAGAAAC
TACAATTAACCCGCTCCGGTCTCACCCTCCTACTTTATTCCCTCGCTTGAATTCAAGCTGCACTC
GACCTTTTTTTTTTACTGCTAGGCCAGATAAGCGCTTGGCAGCAAACTCTGAACACACTAAGCTA
CAGCTCTAACTCAGAGGCTGACTGTCATCAATTAGTGCGTCCCACTAAGAACAGCTACGAACGGA
GCTACTAACAACACCGGTAACAGCTGCTACTAACACACTGTAACTCGCTCAAGAGGAGTTTACTC
CGAGACTAAGACCGGAGCAAGGCTCGAGAGGAACTTGACCCCGAAAGCAAGCGGGGAAAGGACTT
TAACTCATCTGATTCAAGGCGTGTAAACACTGGCGGAGCACAAAG
Found at i:651104 original size:18 final size:18
Alignment explanation
Indices: 651083--651125 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
651073 CAACCTTGTT
651083 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
651101 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
651119 GACTATG
1 GACTATG
651126 GCAGGGCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 650583 -- 651082
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 651126 -- 651625
GCAGGGCTCTAAGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAATACTAAAGGCCCCCTTAC
GTGATAGGGCGGAACGTGACGGTACGGAATTTGAACGGGGGAATAGTCAAAAGGCGAGCACTGAA
ATGAGAAAGGCTTGTAGACTCGTGACGCGATTCGAACAAGCCGGAACGCGGGACGTTCCTTGGTG
GTTCACACTAGAAAGTGCTTCGAAAGGGCAGGTGCGCGGAGCCGGAGCCCGGCATGTTCGCCCGC
TGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACTCAAAGTGTCCGCCTTTTCA
AATAACAAGCAAACCCTTTATCGAGAATTGAGAGTTTCGCCTTTTGAAGCGCCAGTAGCGTAGGG
CGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGC
GAGGGGAAGCCTGACGGAACTACACCTATGCTTCTTTGTTAGGTT
Found at i:657387 original size:21 final size:21
Alignment explanation
Indices: 657344--657388 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
657334 TTATTCATCG
* *
657344 TCGGACTCTTGCTGATCATGT
1 TCGGACACTTGCTGATCACGT
*
657365 TCGGACACTTGCTGATCGCGT
1 TCGGACACTTGCTGATCACGT
657386 TCG
1 TCG
657389 TCTCGTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.13, C:0.27, G:0.27, T:0.33
Consensus pattern (21 bp):
TCGGACACTTGCTGATCACGT
Left flanking sequence: Indices 656844 -- 657343
CGCCAATGAACGGGTCGTCCTGACTGTCTCAGGTCGATCTTAATATTGGCTTGTTCCACCTCAGA
TTCATCGGCAAAGACAAGGGCTTTCTCTTCCTCATCTTCCTGGTATTCCAACTCAGCTGTTGCTT
TCACCCAGTCAATCTTTACGGAGATCATATTGCATGCAACTGTGTTCAGCGAGCGGGCGCCTTGT
TGCTCGTTTTAGACCTTTAGGGCCTAACTTTGGAAGTCTCCCAGAAGAGTTCTTGTTGCTTCTCC
GGCGGTATGTACTCTTCAAGAATAACGGGGAACCTTGGAGCCTGTTCCAACAAGTCAACGGGTTC
TATCTCCACTTTCTTTACTTTCTTCTTCTGGCTCTTTAGGAACTTAACCCTTCGTTTCTTCTGAG
TAGGTATTCTTCTCCTGATACGAGGCAAGATTTATCCCCGAGCTATTCTTTCGGCCAAGTGCTTA
CGCTTCTTCTCGGCCTTGCTCTCATATAAGGTCCATTATTCATCG
Right flanking sequence: Indices 657389 -- 657888
TCTCGTATTTCATCCAATTCTAGGTTTTTTATGTGACGCAGCGAGAATGTTTAAAGAGATTCCAG
ACTAGAAGTTGCTCGACCTGGATGGAGAGAACGGCCTGGCTGACATTGATAGAGGTCGCCCTTTC
TGGTCTCATGGCCCACCCTAAGTTCATCAGGCAGAAAAAAAAAAGTAGTTCAGTTCCGAGAAGAG
GAACGTTAAGAGATTTACTTGCCTGAACCGGAAGATAATTGCTTTGGAGAGCGTAGCGGCGGTTA
GACCCATTATTATAGTTATAGCCGGATCTATGCCTGAAGTGATATGCCTGCTCTAGGGAAGCTAC
GCCAGCATAACTTGAAAGTGGGGCACTCGGTGAAGAACCAACACTTAAAGGCGTTGTCTCTGATA
AGCCCTCTAAATACTCGGCCCGTCCAGGCCAACTTTGGTCCGTCACAGTCTCCGAAAGTCTGGTC
ACAACCACTGAAAGGAAGTCCGGTTTTTTGCTTAGAGATATGCCG
Found at i:709511 original size:24 final size:24
Alignment explanation
Indices: 709483--709531 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
709473 TGACCAACAG
709483 AAAGCATGGGAGAAAAGAAAGAAA
1 AAAGCATGGGAGAAAAGAAAGAAA
709507 AAAGCATGGGAGAAAAGAAAGAAA
1 AAAGCATGGGAGAAAAGAAAGAAA
709531 A
1 A
709532 GAGAGGTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.63, C:0.04, G:0.29, T:0.04
Consensus pattern (24 bp):
AAAGCATGGGAGAAAAGAAAGAAA
Left flanking sequence: Indices 708983 -- 709482
CGAGATAAAATAGAATATGTTTCTTTCCATTCCTCGTGAGCCACTTATTTCTCCGAAACAAGAGA
TCAAAGTGCTTTTCCTCCTTTTTACCAATAAGTCGACGGCGTTACACCATTGGGATACTTCGAAT
AAACTTGAGTACATATAGGATACACCGGTACTAAAACCTTTTCTCGATATATCTTCCAAACTGTT
GGGGTCGTTGCGGGGCCTCAAATAGTTGTTCCCCCGGTGTGAAACCAGTTGGTTCCGTAGTTTAA
GAATTCTGCTGATTCCAAGTACTCCATCTCCATCATTGAATATGGGAATATAAAAAGTAAAGAGG
AGAAGGCATGACCAGAAGAATTGTGTGAAATAAGTGAATTTATCCAGTTGAGGCATGATGGATTG
AGAATAAATGAATCCCTCCATACAGAAGGAGAGGCCTTCCAGTACGAGTAGTGAAGAACGAGACG
AGAGAGAACTGGAGTTGATAGAGAGAGTTGGTTGTTGACCAACAG
Right flanking sequence: Indices 709532 -- 710031
GAGAGGTGGAGGAAGGGACAAATACCACATCAGATCAGGCAGACGAAGTAGCTGCTCTCAAATAA
GCAGTTTTCTTAGCTTTAACGGAAGAAGTTCTTTATACGCCTACCCACTCCGTTGTCTCTCCAAG
GTCACTTCCACTGCCCTGTCTGAGTTGAGAGTAACGAACGGGGGAATTCAACTAGATAGTTATGG
ACTTGTTGTCTTCAATGCTAGAAAGATCCAACTGCGGAGTCAAGGGATGAGAGAGGCCGCCGGGT
ATGAGCTGTATTTCCTGTCTGTTTACTACTTATTCCTTACTCGGATGTGGGAATGTTATATGATA
GAGATCGGGGCTTAGAGCCTTACTTACAGAGATTAGGATTAGGGAAGCGGACGGATGCGGCTACC
TACTAAGAGTCAGAGTTAGAGTAGTAAACTCACTCTCAACATTAATTAATATAGGGAAAAGACCA
TTCCTGGAAAGCAGTAAGAGTCAAAAAGCGACAAGAAAGCCAATG
Found at i:711349 original size:24 final size:24
Alignment explanation
Indices: 711316--711363 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
711306 CCCTCCTCTT
*
711316 AAGATTCCTCACCGCCTGGGTATG
1 AAGATCCCTCACCGCCTGGGTATG
* *
711340 AAGATCCCTCACTGCCTGGTTATG
1 AAGATCCCTCACCGCCTGGGTATG
711364 TTTGCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (24 bp):
AAGATCCCTCACCGCCTGGGTATG
Left flanking sequence: Indices 710816 -- 711315
CTCCTCCTTTTGATGGCATGAGCCTTGTTAAGAAAATTCCCATCATTGAAATCAAAGAAGTTTGG
GACTGAGAACCGGCCTTTCAGCATACTAAGGTGGAGCCCTCTCTTGAGAGAGGTCAGGGAACTCA
GTCTCGTGCTTATGGCAGGTCAGTGAGGAAGTAAGAGTATGCCTTTCCTTCCGATTCGGAGCTAG
AAATTGGCATTTCATTTCCAGACAGGTTCCTCTTTATCAATTTGCCAGGAGTTGATCCGCTGGAG
TTTCAGACTCAGCAAATGCATCAGCTTGGCTAGGAGCTTCAGGGGAAAAGTAAGCCTTTTACTAA
TGAACGATAAGCATCTATATTGACTCTATTTTTCTTTTATTAAATATAAACGTTAACGGACGAGA
TCTATTATCACTTTTCGCGTGTCCTCGGAAATTTAGAGTAGGTACGAATTCTCCCAGTAAGCTGA
TCAGACACAGCCCTGGACTTCCCTTCACTACCAACCCCTCCTCTT
Right flanking sequence: Indices 711364 -- 711863
TTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGGTATGATAAGTTT
TATAGCTTTCTAATCAGCCAAGGCCTAAACAACAGAAAGTAGTTCACTCAAGAAAGTAGTTCACT
CAGCCACCGGAGAAGTAGTTCGGATAGCCCTGATCAAGTGGTAGTTCACTCACCCACAGGCCAAA
ACAGAAGAAAGTAGTTCACTCACCGGATAGAGGGTGTTATATTGTGCCTAGCACCACCATCTTGC
CTCACACCTTCCATAGCGAGAAGGATGCTTTCCGACGTGCACAAGGATAGCCTCGCTTCACCTGT
TTAGGACACAACAAGGCCTTTTTGGTCATCTATTCATGAATAGCTCTTCTCTCTTGCTCTTCTAT
CGGTCCTACTACGGTTCCACTAAGTTGTTCTTCCATTCCGAACTCTTTCTAGCCCTATGCACTTC
TGGCTACCTGAAGGGTCGGTCCTCTTGTCTATGCTCTCATCCATG
Found at i:711484 original size:17 final size:17
Alignment explanation
Indices: 711462--711495 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
711452 CCTAAACAAC
711462 AGAAAGTAGTTCACTCA
1 AGAAAGTAGTTCACTCA
711479 AGAAAGTAGTTCACTCA
1 AGAAAGTAGTTCACTCA
711496 GCCACCGGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (17 bp):
AGAAAGTAGTTCACTCA
Left flanking sequence: Indices 710962 -- 711461
AGGTCAGTGAGGAAGTAAGAGTATGCCTTTCCTTCCGATTCGGAGCTAGAAATTGGCATTTCATT
TCCAGACAGGTTCCTCTTTATCAATTTGCCAGGAGTTGATCCGCTGGAGTTTCAGACTCAGCAAA
TGCATCAGCTTGGCTAGGAGCTTCAGGGGAAAAGTAAGCCTTTTACTAATGAACGATAAGCATCT
ATATTGACTCTATTTTTCTTTTATTAAATATAAACGTTAACGGACGAGATCTATTATCACTTTTC
GCGTGTCCTCGGAAATTTAGAGTAGGTACGAATTCTCCCAGTAAGCTGATCAGACACAGCCCTGG
ACTTCCCTTCACTACCAACCCCTCCTCTTAAGATTCCTCACCGCCTGGGTATGAAGATCCCTCAC
TGCCTGGTTATGTTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGG
TATGATAAGTTTTATAGCTTTCTAATCAGCCAAGGCCTAAACAAC
Right flanking sequence: Indices 711496 -- 711995
GCCACCGGAGAAGTAGTTCGGATAGCCCTGATCAAGTGGTAGTTCACTCACCCACAGGCCAAAAC
AGAAGAAAGTAGTTCACTCACCGGATAGAGGGTGTTATATTGTGCCTAGCACCACCATCTTGCCT
CACACCTTCCATAGCGAGAAGGATGCTTTCCGACGTGCACAAGGATAGCCTCGCTTCACCTGTTT
AGGACACAACAAGGCCTTTTTGGTCATCTATTCATGAATAGCTCTTCTCTCTTGCTCTTCTATCG
GTCCTACTACGGTTCCACTAAGTTGTTCTTCCATTCCGAACTCTTTCTAGCCCTATGCACTTCTG
GCTACCTGAAGGGTCGGTCCTCTTGTCTATGCTCTCATCCATGCTACGAGTATGATCAATGGCCA
CTGCCGGAGTCTTTATATTGGAGTCATCCTATCTTCAACAAGAATAGCCTACTGGCGATTAAGTA
GATCAATCATGTGAAGGATAGGCGTAGGAGATCCAATCCGGTCTC
Found at i:712421 original size:18 final size:18
Alignment explanation
Indices: 712398--712432 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
712388 AAGGCCTCGT
*
712398 CCTTTGACTTGTGATTGG
1 CCTTTGACTTGCGATTGG
712416 CCTTTGACTTGCGATTG
1 CCTTTGACTTGCGATTG
712433 ATTAGCTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.20, G:0.26, T:0.43
Consensus pattern (18 bp):
CCTTTGACTTGCGATTGG
Left flanking sequence: Indices 711898 -- 712397
TTATATTGGAGTCATCCTATCTTCAACAAGAATAGCCTACTGGCGATTAAGTAGATCAATCATGT
GAAGGATAGGCGTAGGAGATCCAATCCGGTCTCATCTTCCATCGGATCTCGTCTTGCTTTTATCT
ATGAACCGAGGACTGGTATTCCATCTCCTCTCATTATCCTACCTGACCAAGCGAGTCTATCACCT
TCTTCGCTACAGGTCGAGTTCGTAGTGGGTAGACCTTTATAGCTTCACGCCTTCATGGAGAGCTA
GGATCCGAGATCTATGCTATGCTCCTTCTATAGGAGTCGAACATCTGTCTCCGTCATGAAAGGCT
ATGCTACTAACATATGGACGAAGGAGACGGAAGACGAGAATGAATGCTCTACTCCGGTTAGCTGA
TTGAACCTCTGGTTGAGTCTGAATTCGTAGTTAAGTGAGTCGTTCTATCTATATGGGTATTCATA
CTACTACTATAGGTTAGTGACCAAGCTCTCCGTGCAAGGCCTCGT
Right flanking sequence: Indices 712433 -- 712932
ATTAGCTCTAGTCTCCCTCACTATGTGAGTCTCCCCTCGCCCTAACGTAGCTTCAAACAGTTCCC
AGTAAATTCTTAATGGTACATTGGAAGACCACTGAAGGAAGTACGGGTTAGGGCCCTTAAGTGGA
GAACTACTTTTGGGTGGGATGCTTGAGTGAGGACGAAGTGCTTGTTCGCTCTGTTCGGGAAGGAC
CCTTCCTTTTTTGCTTTACACACCTTATCCCAAGCCACTAAATCTTTCCTATTTTGGTTATCCTT
CTTTCCCCATACAAAGATGCAGTTCCTCCTATCTATTTCCTGGTTTATAGCTTCCGGAATACGCG
TTGTTTGCATGGTGTATACAGGTATAGCAGAGGTTACAGACTGAACCTGCAATGTTCTTCCAGCC
ATAGACAACTGCTCAGCCTTCCATCTAGCCAACCTATCTTGCACTTTTATCGAGTATGTGGTAGT
AAGTCGTTTTAGAGACCCTCTTGTGTATGAGGGGTACTCCCAGTG
Found at i:720334 original size:18 final size:18
Alignment explanation
Indices: 720307--720342 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
720297 TTAGTGAAGG
720307 AACAAACAACTCCTGAGC
1 AACAAACAACTCCTGAGC
*
720325 AACAAGCAACTCCTGAGC
1 AACAAACAACTCCTGAGC
720343 GCTAACGCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.33, G:0.14, T:0.11
Consensus pattern (18 bp):
AACAAACAACTCCTGAGC
Left flanking sequence: Indices 719807 -- 720306
AAATACTTTAGAAAATGGGATCCCTTGTTTGTGATACTAGTCGACGGCTGGCACTTGAATGAGTG
TGCTTGCTTCGGTTGCTCCTTGGTACAAGATAATAGAATATTGAGCAAGCTGGCTCTCGGCTAGT
TAAGTTGCACTTTCCTCTGCGTATCATGAGTTTAAGCACCCTTTTGAGCGCGGAGACCCCCAAGC
AATAGAAAGACAGGGATTCGGAGTCAAAGTCCAGGTATTTTTTACGAATAGAGGGCAGAGAGCTA
CGAATGATTGTTTTGATCCTTGATGCTGGAAGCATTGGTTTCCAGGACTGGAACAAGAGAAAGAG
GAGAGGAATCCAGAGAACAGGAGCAGGATAGCTTGGCCTTTTGAGCTTCTATTCCTGTTTCCGGG
CCAGTAGACGAAGAAAGATAAGAAGAGTCTGTTAGTTCGCTTCCACTGGATTCGATATAAAGAGA
TAGCTTAGAGGGTGTTAGTTCTCCTTTCAAAGGTCTTAGTGAAGG
Right flanking sequence: Indices 720343 -- 720842
GCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCAACAAGCAACTCAACAAGC
AACGGTAGAGCGCCCTAGCGCGAAAGCCGTTGCGCAACAAGCAACGGTTTCAAGCCTAGCGCGAA
AGCCGTTGTGCGTTAGTCACGCACATACGTTTTCTTGCTGCATACGTTTTCTTGCTTCACGCTCA
TACGTTTTCTTGCTGCCGTTAGCGCAGCCGTTTTCTTGCTGGATAAAACAAGCTGGAAAACTTAT
CTCTCTCAGGTCCAGTTTCGATCTCGAACTAACTTACTTGACTTAATAGGTCGGAAGAGAGAGAG
ATCAACGACGGAGCTACTAGCTACTAGTTGGAAAGGACGAGACCACCTTTCGTACATTTCTACTG
GTCAAGACATTCGAATAGCGAACGAAAGACCAGGAGATTGGATCTAGAAAGCACTTCCAGCAGGG
TTGACGGCTGTGTGGCCCTCATTCAGCTGGAAGTAGGAAATCAAT
Found at i:720516 original size:17 final size:17
Alignment explanation
Indices: 720496--720528 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
720486 TAGTCACGCA
720496 CATACGTTTTCTTGCTG
1 CATACGTTTTCTTGCTG
720513 CATACGTTTTCTTGCT
1 CATACGTTTTCTTGCT
720529 TCACGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.15, T:0.48
Consensus pattern (17 bp):
CATACGTTTTCTTGCTG
Left flanking sequence: Indices 719996 -- 720495
CCAAGCAATAGAAAGACAGGGATTCGGAGTCAAAGTCCAGGTATTTTTTACGAATAGAGGGCAGA
GAGCTACGAATGATTGTTTTGATCCTTGATGCTGGAAGCATTGGTTTCCAGGACTGGAACAAGAG
AAAGAGGAGAGGAATCCAGAGAACAGGAGCAGGATAGCTTGGCCTTTTGAGCTTCTATTCCTGTT
TCCGGGCCAGTAGACGAAGAAAGATAAGAAGAGTCTGTTAGTTCGCTTCCACTGGATTCGATATA
AAGAGATAGCTTAGAGGGTGTTAGTTCTCCTTTCAAAGGTCTTAGTGAAGGAACAAACAACTCCT
GAGCAACAAGCAACTCCTGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAAC
GCCAACAAGCAACTCAACAAGCAACGGTAGAGCGCCCTAGCGCGAAAGCCGTTGCGCAACAAGCA
ACGGTTTCAAGCCTAGCGCGAAAGCCGTTGTGCGTTAGTCACGCA
Right flanking sequence: Indices 720529 -- 721028
TCACGCTCATACGTTTTCTTGCTGCCGTTAGCGCAGCCGTTTTCTTGCTGGATAAAACAAGCTGG
AAAACTTATCTCTCTCAGGTCCAGTTTCGATCTCGAACTAACTTACTTGACTTAATAGGTCGGAA
GAGAGAGAGATCAACGACGGAGCTACTAGCTACTAGTTGGAAAGGACGAGACCACCTTTCGTACA
TTTCTACTGGTCAAGACATTCGAATAGCGAACGAAAGACCAGGAGATTGGATCTAGAAAGCACTT
CCAGCAGGGTTGACGGCTGTGTGGCCCTCATTCAGCTGGAAGTAGGAAATCAATCCCGGCACGAC
CGATGACTTAGTCTCCTTCTCCGCTTGAGAGGGAAAGATGGCTGCTCTGTGAACAACCCTAGTTG
CTGGTCCTGCTCCTGCTGCTGTCTGAACTGCCACCTCTGCTCCAATACATAAGCTCCAGCTGAAG
TGTAGCAGCTCCGTCCCATTCATCACTGCTTTCTGTTAAAAAGAA
Found at i:733811 original size:20 final size:20
Alignment explanation
Indices: 733786--733826 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
733776 ATAGGTGGGC
733786 GAGAGTGCTACTGAAATGCA
1 GAGAGTGCTACTGAAATGCA
733806 GAGAGTGCTACTGAAATGCA
1 GAGAGTGCTACTGAAATGCA
733826 G
1 G
733827 TTGGAACTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.15, G:0.32, T:0.20
Consensus pattern (20 bp):
GAGAGTGCTACTGAAATGCA
Left flanking sequence: Indices 733286 -- 733785
GTAGACTAGTCTTATATAAGCTATTTACGCTTAACGAGTTATAAGATGTTGCCAATGACCGGGTA
TCGAGAAGAGTTGGATGCGAACCCCTCCCATGAGAAAGAAGCCTAGCAGCCCGATACGCCGAAAC
CTCTTATTCCGGTCCTTAGGCTAACTACGACTAGTCAGGAATTGCGTACAGAGAAGGAAGAAACG
TCGTAAGTAACAATAGCGGCTTAAGTGAAGCTGGAAGAGCAACTTAAGCGAGTGTTGCTAGAGGA
TTCTGAGCGGAGGTGAGGTCCTTTCTGTACTCGAATGCAGTTACGTAGGAGATCCCTTCTTGCTT
GTGGCTTAAAAATGATTACCTGTTGCTAACAAGCAAGGGATGAGCGCTAACGCGCGAAAGCCCCA
TTCAATAAACGTAAGGTGCGTTAGTCACGCGTTTAAGCTAACGAATTGCGTTTTCTTGCTTATAT
ATAGGGCGTTTTCTTGCTGGATTGAGCTTATGGTGATAGGTGGGC
Right flanking sequence: Indices 733827 -- 734326
TTGGAACTGCAATCGTAGGCCGGTTACGCTGAAGTAAGAGGTGGGTCAGGTGTGCTACCGTCACG
AGTGAAAGAAGAGCTCATTTCGATTTCGCTATCGGGTTGTTGATGGCCGCCTTACAATGTGCAAA
GGATTGCTCCAAGTGTAGTTGCAGTCTCTTTGCAAGTGAGCAGCGATCGTTCGGAAAACGAGTCG
GCATGCTCTTGAACGACCCATAGGCTTTGGGCTTCTCTGGCTGCTTGAAGGACGCAGATTGGGAA
GTTGGCTGTGATCCGTCGTGCATTGTGCAGACGCCTGATGGCTTACGTTGCCAAGAGGGCATTGT
GAGACAAAGGAAAGGGCTTAAAAGGATGGTGTTTGGCCCAGGATCTCACTCACCTATGCATGTGC
GAGAATGCGATACGGTAGAGGCCGATGTGTCATTGGGACACTTTAGCGTGGTAGACTGGGCGACG
AGTGCTTAGGGCACTGGGAACAGTCCTCTATTGGGGAAAAAATTC
Found at i:735185 original size:4 final size:4
Alignment explanation
Indices: 735176--735201 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
735166 TTACCTACTT
735176 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
735202 GGCTGGTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Left flanking sequence: Indices 734676 -- 735175
GGTGATTGAGCGACCGGATACGCGACGGATGCCAAAGTCAACTCAGATTCAGAGGTCGATGGAAA
CTGAGCAAGGATGTTCCGAAGTCGGAAATGTGACCCAAACCGGTCGATGTGTTAACCCGGCTCAT
CTTAGGTCGGACAATCCTGGGAACGAATAAGAGAGCCAGAATCCCACGCCTCCCGCTACACAACC
GGCTAGAAGACCCGAGTACGAAGTGGCCCTGACGGAACGGAATGAAACTTAAGAAGAGAACTCAA
GCGCTCATCTACCGGTAGGTGGTACGAGAGCAGCAGCTCCCAACCAGGAAGACAGACAAAGAAAC
CTACCTTCCTTATGCGATTAGAACAGAAGAAAGAAAGAGACAGTGAAAACATACCTAATCCCCAT
CCGACCATCGACACTTGATGGCTAAACCGACTCGCTCTAAACTCGAACCGAATAAAACATGAGTG
AGAAAGACCTATTTGAATAGATGCCCCTTTTACCCTTACCTACTT
Right flanking sequence: Indices 735202 -- 735701
GGCTGGTTGCACTCACCTGAGATTTGAGGATCGGATCCAGAAAACAAGGCTGACAACAACAACCA
CTAAAATGCCGGAAAAGCAAATCAAAAAATACCAAAAGCTTTTGAAGAGTTTGGCCGCCATACCC
GGCATCAAGTGGAAGAAGGCTTGTAACCCCCTCAGGTTCTTCCACTTCCCAAGCCTCAGGTGCTA
AAACGAGGGGTATCAAATCCGTTCCTGTTGAACCTGCTCAACTAAAGCATAAGAAATCCGCCTTG
GAAGAATAGATAGATTCCTTGGATGACTATGTCCAGAAAGAATGGGCATTAGTCAGTCACCCTCC
CGATGAGGTTAGGAGGGTTCTTCAGAAACTAAACCATTAATTACTTAAATAAGTAGATACGATGC
CCCAGGAAAAAAGGACGGCCGAGCGCGTAGAGCAAGAAGTTATTTCGGGCAGGAGAAAGAAATCC
ATGAACTTAGTACAGACACCTATTGTTTGTTCAATTTCTTCTTCG
Found at i:772236 original size:21 final size:21
Alignment explanation
Indices: 772210--772254 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
772200 AAGTAAGAAA
772210 ATAAGGCCCACGCCTATATAT
1 ATAAGGCCCACGCCTATATAT
772231 ATAAGGCCCACGCCTATATAT
1 ATAAGGCCCACGCCTATATAT
772252 ATA
1 ATA
772255 TATACAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (21 bp):
ATAAGGCCCACGCCTATATAT
Left flanking sequence: Indices 771710 -- 772209
TGGGGGTTGCAAGGGAGCCGGCTGCTCAACCGACTGCTCTCTTTCACTTGTTGTGAATGAAGGAA
GAGAAGGTATGGAAGGGTCGGAGGGCAGAGGGCTTAAGTCAGAGGGAACGGAGGGAAAGGATCTC
CAGGGAGAGTCGTTAGAAGGGCCTGCCTCATTCCTATGTGGCGCTTGGTGGTTGACGCTCGCTTC
CGAACTGGGTGCGCCCGAAGCTCCTGACTCCGCCCCAGCGGGAGAATTTATCACATTTGTTGTGA
GATCGAATTCACCCAACCACAATTGAATAAAAAAGAAATCCAATTCCCCACTTCCTAAAAGAAAT
CTGACTAAAATCGAATAAAAATAGAAGCCCATCCATCTCTGGCCATCTCTGGAAAGGCTTTATAA
AGATAAAACACAAACGAATACATAAAAATTTAAAAACGAGAGCTCTTTTTTCCTTCCTCGTCATT
TGGTAATTACGAACAAGGAATAGGCCGATTTCATAAAGTAAGAAA
Right flanking sequence: Indices 772255 -- 772754
TATACAAAAAATGAGAAGATCGAAGAGAATGAAACGCACGTGGTGGTCATTATAGCGGTTCCTTC
GGATCCTAGAAAACGTCCAAAAAAACCAGCAACGGAACTACCGAGCAGGTGCAAAAATACGATAA
GTAGAGACATGAGATCTAGTGTAATCAGATGCCAAAAATCAGACAATTACAGAGCAGCCTGTGAT
TGAGATACAGTACGGTACACTGAAAACCAACCCAATCTCGATGAGAGAAGCAAAACTTAGACTTC
TACATCAACAACCTAAAGCTTCCTTCTCTCTTGTTTTCAGAACGGCTCTACTAGAAATCGGTGAC
CGGGTTACGTTCGTAAACGTGTAAACCACTGTTGGGCGAGATTGTTCGATCCGATCCGTGAAACT
CAAAAGAAGGAGATTCGGTTATTCACTTTATATACGATAAATCTTATTAACAGAATATCATTCCT
CCATGCCAATTCCCTCTCCGAACCTCCCTTTCTCCCTAATCCCTG
Found at i:782257 original size:26 final size:28
Alignment explanation
Indices: 782190--782260 Score: 103
Period size: 26 Copynumber: 2.6 Consensus size: 28
782180 AGAAACTGAG
782190 ATCCGGTGAGTTCACTACTTCCTATCCT
1 ATCCGGTGAGTTCACTACTTCCTATCCT
* *
782218 GT-GGGTGAGTTCACTACTT-CT-TCCT
1 ATCCGGTGAGTTCACTACTTCCTATCCT
782243 ATCCGGTGAGTTCACTAC
1 ATCCGGTGAGTTCACTAC
782261 CACTTGAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 5 0.13
26 16 0.42
27 16 0.42
28 1 0.03
ACGTcount: A:0.17, C:0.28, G:0.20, T:0.35
Consensus pattern (28 bp):
ATCCGGTGAGTTCACTACTTCCTATCCT
Left flanking sequence: Indices 781690 -- 782189
AAGGTCGTGCTACTCGGTGAATTCGGGTCAGCCAGCATCGATAGAAGGTAGTCCATATCGACTGT
TGATACGTCCTTGGGAAATAGCGCATCCAAAACAGAAGCCAGTTCCAGCAGAGTGAAAGTCAAAT
AAGAAGGGCCTTGAGCCCGGTACTCCTTCTTCAAGCTATCACGCCCAACCCTATTCCATGCTCAA
AGAGGATCCCTTGCTCTACTTGACTTGATGAAGGCCCTAAGCTCGAAGTCAAGGCTTCTATGCTG
CTCGATCTTTCTTGACGGCCTACTTAGGTCTCAGAATGAGATTATGAAAGAGTGGCAGCAATATC
AGAAGAAATGCTTCTTTGATCCTTAGACTGCTACTTTTACTTCCTTTACTACTCTTTGTTTGTGT
CCCCTCAGTTGCTTCTTGTGCCTCAAAAGTGTCTGCTTGTGTTCCCTTGCTACTAAAAAGAAATA
CCTCTTTGAATTTTGGAATGAGCCTATTCCTAGTCAGAAACTGAG
Right flanking sequence: Indices 782261 -- 782760
CACTTGAAGAACTTCTCATAGAAAGCGACTTTAGAACTCTCTTTGAGAGTAAGACTTACGGTGTT
TGAGATGTTTTTAATAGGTGTTAACGGCTCATAAAATACCCTTGTAGCTCGTTTGCTTCCTAGCC
ATATTCTATAAATATTTCTGCCCGATGTATCTGGTACTGGATAATAGCTTCATTGTTTCGCCCCT
CCCGATCGTTGTCAAGCGGATGGGACTTCGTAAGATGGATTCCACTTGGTCTCCTTCTCAAGCTT
CCACCCACGTTCTTCACTTCTTTCCATCTGCCCAAAGGTAGAGGAATCAGGGTCTTACTACCCGC
ACATTGTACCTGGGAGCGTAATGAAGAGATTTGGATGAGAAGTGGGATGGCAAAGGATTGTAGCT
AGAGTATGAAGATGCAGGTGGAGCTGGCCACAGATGCCCATATACTGGTGAAGATAAGTTGTAGA
GTTCCGGTGCCGGAGGAAGAGCTTTAGTAACGAGCTTTGGAAATA
Found at i:788860 original size:23 final size:23
Alignment explanation
Indices: 788833--788913 Score: 144
Period size: 23 Copynumber: 3.5 Consensus size: 23
788823 TAGCCCTTTA
788833 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
788856 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
788879 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
**
788902 GCTATATAGGGC
1 TATATATAGGGC
788914 TTCTTCCTTC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.44
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 788333 -- 788832
ATTCGATATTGGTTTTGGAACAAAGGCTAAAGTGAAAGTAAGAGTTGATTCAATTCGAAGTTTAT
TCCTCAGAAGTGAGACCAAAGTTGCACTCTCCTACTATGTCACGGAATCCAATTTGTGGTTCCGC
ACGTTACACCACTTATCTGTGAAACGCTATGAACAGCTCGGATCAGACTCAAGCAGATTGTTGGG
CCTTAAAATCTAGTGAACCCTAGCCAATGAGTCCCTACTTTACTAGGATAAAAGATGCCGGTTGA
AGAATGCAAGATGGAAATCCCTTTACCTAAGAAACGAAACTGATCATCTTCCAAACGACCTTTAT
TTAATTTACGCAATGACTTTAATGAGATAATGAGAGCAAGCAAACAAGCAACGGATGAGCGCTAA
CGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCAACAAGCAACTCCTGAGCGCTAAC
GCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCCTTTA
Right flanking sequence: Indices 788914 -- 789413
TTCTTCCTTCACTGAAGAAGGTGACTAAGACGTGTGGCCTATTCCAATAGCGGGTAGACGGGGCG
GATGCCTATTTTAATCTTCCGATTGTGATAGGATTCCATTTCCTCCTTCTATGAATTTCGTGCTT
ACTTCTTTGCCTAAACTTCAAGGTCAATAAATTAGGACTCCTACCCTAGGTCTGAAACTCGGTTT
GCTTTCTCCTACAAAAGCTCAGTGGGTCTGTCTCCTACTACTCCCCCGATACGAGTCCTCCCCCT
TTCTTTCCTCGTTTGAACCTCGCCTTTTCACTATAGTTGCTGCCATTGACTCACTTCCATATTGA
GAGTGCTATAACAAGTTCGCTAACCAGGTCTCGCTATCCACTCTCCTAGCAAAAGAGAGAGCACC
TGTTCGCTAGCCACTCTACTAGTTGAAGATAGAGAAGCCGCTTTTGCACCTGGGATGAAGCGCTG
TCACCTTTCTTGAATCGATCCGTATGAGGGAAAGATCGAGTTAGC
Found at i:794040 original size:19 final size:19
Alignment explanation
Indices: 794016--794053 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
794006 AACAAGGGAT
794016 TAGCTCATAGCTCATATCG
1 TAGCTCATAGCTCATATCG
794035 TAGCTCATAGCTCATATCG
1 TAGCTCATAGCTCATATCG
794054 ATAGATGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (19 bp):
TAGCTCATAGCTCATATCG
Left flanking sequence: Indices 793516 -- 794015
ACCTAGATGCGGCATCTCTTGCCGCCCATTAACCTAATGAATCTGTTTGGGACGCTTAGGCCTCT
CCTTCTCCTGAAATGAAATCGGCCGGAACAGAAAGATCTTCCAATTGCATCTCTAAGGTAGTTTA
GACCTCCGACATGATAGACTCTTCCCCGTGAGATGCCTCCCTTCTTCTTGTCAGATCGATAGGAC
TAGTATAAGGGTCCGACCCGAAGCCGATGTTTCTTTTCATCCGTTCCTCCAAAGCCGAAAGCGAG
ATCCATTCACTTTTAGCGTCAGTGATCACTGTAGAGTGATGGTTGATTGAGGATAAGCATAGCAT
GTTGGGATTTTCATGTCATAGTCCGAAAGCATTAAGTGAAGCTAAGTCAAGCTTCTTAAGGAATA
ATTAAATAGCTCCAAGAAATAGAGCCTTTTAAGACAAGAAAAAAGAGTGATTAAGGGAATCACCT
TCAGGCACCACTTAACTCAATCTTTTCTACATGAAAACAAGGGAT
Right flanking sequence: Indices 794054 -- 794553
ATAGATGAACCTGAATCCGGAGAGTGAAGAGAGGAAGGAACATGAGGCATCCTTCTTGCAGGAGC
TCGGACAAAGGAATAAGTGCATCACTCATAACCTTTTCTGCAGAGCAAGAAAAAGCCATTGAGCA
GTTATCCGTACGTGACGGGGGATAGCATGGAGGGAGTTGTCCTGCAAGGAGGCCTACTACACCAG
GTGCCGTCATCAAGGGTCAATGAGGTCGGTCAAGGTGACCATCAATGCTTTCGAACTGGGGTTCG
CATGGGTTTTCCACAGGCTCTTGCTTTCCATGTCAAAGAGAAGGCAGGCAAAGAAACGGTTGAGG
AGTCACTCGCATTAGTCGGCCAGCAAGAGCTGTTCGGTGAAAGGCAGCTATAGGGAAAGCAGAAG
TCAGGGAAGCAACGGTTCGGGTAAGCAGCTGTAAGGTAACCTGAAGTCGACTACGACTTGTCATT
GTCCGTCCGAGCGGTAGGAAAAGAAGCTGTCAGGAGCAGGAATCG
Found at i:799781 original size:18 final size:18
Alignment explanation
Indices: 799747--799783 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
799737 GTATCTCCCC
**
799747 ATGGCCTTTCGTTACAGA
1 ATGGCCTTTCGCCACAGA
799765 ATGGCCTTTCGCCACAGA
1 ATGGCCTTTCGCCACAGA
799783 A
1 A
799784 GATCTGTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (18 bp):
ATGGCCTTTCGCCACAGA
Left flanking sequence: Indices 799247 -- 799746
GTCGGACTGACTTCACTGATTCTCCTGCCCGAGATGAGTCAGGGGCAGACCTTCAAGAGGTCTAT
CTAATAGTGAAATCATGATCAATAGAAGTTGGAGGAGCATGCTCAGTGGCTACTAATGTTCGGGA
TGGCCCGGGGTAAAGAGACTAGATGCCGTGTGGAAAAGGAAATGGAAAAAGAAAGAATCTATCGC
ATGAATAAGAATGCCATTGAGTTTGATTACCCCAAGAGCAGATAGTAGCTAAGTAGGAGAAGCCC
GCGGAAGATAGAAAGAAAGAAAGATATGGAGATCTAGTCCATGGGGATATTGCTGCTTAGTCGTA
TCCGTAGGTCCCTACACACCTTTGAACTCACTCGGCTTGTACTCAGCTCGGGGCTTAGGAACTTA
AGACTTGCCTGTTTTGCCGAGCAACTTAACTCTCTTCTCTTGTTCTTGTTTCCCCCCCTTTTGAC
CCATTTCAGTAAGTCAAATCAGCGGATCACAAACGGTATCTCCCC
Right flanking sequence: Indices 799784 -- 800283
GATCTGTTCCGTTGTTATGGAACAAAGTCCGATCGATTCGTGCTCAAGCCCCAGCTCAAGCCAAT
AAAAAAGGTGCAGCGAAGTTATCCATCCAGGCCCCTGCGAGAGGCGAAGATCTTCCCGGGCCTCG
CAATAGCTAGTTAGTTGGCTTTTGATAGGCTATTACAGAATCGAACTTAGAAATGAATTTACTTA
CGACAATAGATCAATAGATTCTGCTCGTGATTCCGCTCTCTGCTTTTAAACTAAATTCGACTGAG
CAAAGTAGCTCCTTTTTGTAAGCATCACACGAATTAGCTTGTGCCACCAGATTAATATAATAATC
TATAAAAGCGAAGAGTTCTCTATCTTTTCTTTTGCTTTTGTCGAAGGTATAGAGGGCATACGAAG
ATGTAAACAACTGGAAGAAGAGCCTAAGATTGATTACTCTCTGCCAGGCGAAGACGAAAGCAGAA
GAGATTCGTTAGAGAAGAGCAAGTAGCTGTTTTCCTTCCTTTTAA
Found at i:820579 original size:24 final size:24
Alignment explanation
Indices: 820547--820593 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
820537 TGAAGTGGAT
820547 GCTAAACCAATGAGCTCCCCAAGG
1 GCTAAACCAATGAGCTCCCCAAGG
*
820571 GCTAAACCAATGAGCTTCCCAAG
1 GCTAAACCAATGAGCTCCCCAAG
820594 TGAGTTTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.32, G:0.19, T:0.15
Consensus pattern (24 bp):
GCTAAACCAATGAGCTCCCCAAGG
Left flanking sequence: Indices 820047 -- 820546
TGCCTATCTACTTATTATTAAGTAGTTTCCTCGAAATCAAGGGGTTCCATTAGAAGCTTCCATAT
CAGGTCATCTGCTAACGAGCTTATGTGCTTCTCTCGAGGTTCCATGGCCAGTGGAGAAAGAAAGA
GACCAGGATTCGCCTTCATTTCGCCTGGTCTCGATAGCGAGTTGAGGGATGAAGAGAAATAGATG
CCTTCTTAGTCGCTGCTAGATGCTGAACAAAGGAGTTTCTTCCCGGTGAAGTGCTGGCGATTCTT
TGAGTCCACATTTAATCCATGTTTTAGGAGCTCTTTCATGGTGGAAAGATCATTTCTCTTTGCTG
CTAGGCGCATGTAGCCTGGTCGTAGATCAGATTGAAGCAAGTGGATTTATAGGTTTTCCATACCT
TAGCGCAGGTCTCTTAGTGATTGATTACAATTGCCCAATTCCAGCCTTTATTTTCTCTTAATGTC
GATAGATGTAACGAAAGGTCTGCTATCAAAAGGTCTGAAGTGGAT
Right flanking sequence: Indices 820594 -- 821093
TGAGTTTGCTTTGCCTTCTCTTAAAGTAAAGTGAAAGTAAAGGAATGATTAAACCCCGTCCTTCG
AGACTGGGCCTATCTCTAGTAGCTAGTAGATAGAGTATCAGAGGCTGCGTACGCTAGTTAGTTGG
CATTCCTAGGTGCCTTTGCCTATCTATTAGTTTAGTTTACTATCGGTCGAGAGGACGCAACTCTA
ATCTAACGACCTCATTTATTATCGTGTGCATCTCTTCTGACTATCTATTAGTATGAGAGCTGCCG
AAGGTACCGATAGCTTAAGCGCTTAGGTCTGTATTCTTCTATCCTATGGACCGACTTCCCTCCTC
TAGGGCTCTAGCTTCTTGTCTCAAGAGTCCCCCACGGGAGCTCCTATCTTCCCTACTAATAGCTA
GAGTAGAGTAGGGCTTTGCTTTCCTGTTAAGGGAAGGGAGTCAGTCCTTTCCCAATCCTAGTAGC
TAGTTCTTGAGCTTCCCTCGTCCTAGCTCTGGTAGTATGTCGATG
Found at i:834958 original size:64 final size:64
Alignment explanation
Indices: 834879--834999 Score: 242
Period size: 64 Copynumber: 1.9 Consensus size: 64
834869 TGCTTTACTT
834879 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCC
1 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCC
834943 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGC
1 AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGC
835000 TAACGCCTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.36, C:0.26, G:0.25, T:0.13
Consensus pattern (64 bp):
AACAAGCAACGGATGAGCGCTAACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCC
Left flanking sequence: Indices 834379 -- 834878
GCTGGCTACAAGTATAGCCAAATAAAGATGAGACGGGACGGACGGTCAGAGGCCGCTGCGGGACT
ACCGGAAAGCCCGCCCCCGCTAGCTAACATAGATAGCTATTCCCGGATAGCAGTAGTCTCTATTA
GAATCTCTTCCCGACCAGGCCAGGCCGAATCGGGCCACCACTTGGGATGGGAATGGCTCAGCCCA
CATGCATATGCATCATTTGATGAAAGCACTCCAGTCGCCTCCTTGAAGTGGCTTGTCAACCACCG
GGCCGTAGCTCCTCACCAAATGCCCTTCCTTGGGTTGGGGCAACACAGCACATGAGTAGTTCGCT
CCAGGGCCCCACCCCCGCTCCGAGATGAGAACGCGGAACATTCCCCTTCCACCTTCGCCTTTGAC
TATATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGAGATCTTTTAGAACCTGCGCGT
CATAAATAGGGCGCGGAACTATAAAGAATGAAAGCTGCTTTACTT
Right flanking sequence: Indices 835000 -- 835499
TAACGCCTTTATATATATAGGGCGTTTTCTTGCTTATATATAGGGCGTTTTCTTGCTTAGGTGTA
GTGCTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCAGGATGCCGGCCGAGATGGAGCTGGGAG
CCAACCTATACTTTCCTGGGGCTTGCCTTGCCCCAACATCTACACCAGCGGGCGCCGAAAAGGAA
CCAGCCCAGCCTCTTCAAGAAAGCTTTGCTTGGTAGGCGCTGCCTACTTACTCGGACAATGCTCT
AAACACTAAAGTATGCTATGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGCGTCTCG
GAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGGGGACCCCGGTAT
ACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATG
GTCCGGTATTCCCTTGTTCCCCGTATTGGTTATGTTCCTCATTCC
Found at i:835040 original size:23 final size:23
Alignment explanation
Indices: 835011--835058 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
835001 AACGCCTTTA
835011 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
835034 TATATATAGGGCGTTTTCTTGCT
1 TATATATAGGGCGTTTTCTTGCT
835057 TA
1 TA
835059 GGTGTAGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.48
Consensus pattern (23 bp):
TATATATAGGGCGTTTTCTTGCT
Left flanking sequence: Indices 834511 -- 835010
ATCTCTTCCCGACCAGGCCAGGCCGAATCGGGCCACCACTTGGGATGGGAATGGCTCAGCCCACA
TGCATATGCATCATTTGATGAAAGCACTCCAGTCGCCTCCTTGAAGTGGCTTGTCAACCACCGGG
CCGTAGCTCCTCACCAAATGCCCTTCCTTGGGTTGGGGCAACACAGCACATGAGTAGTTCGCTCC
AGGGCCCCACCCCCGCTCCGAGATGAGAACGCGGAACATTCCCCTTCCACCTTCGCCTTTGACTA
TATAAGGTCGGGAGAGGCTCCCGATTTCTGGTTTATAGGCGAGATCTTTTAGAACCTGCGCGTCA
TAAATAGGGCGCGGAACTATAAAGAATGAAAGCTGCTTTACTTAACAAGCAACGGATGAGCGCTA
ACGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCGTTAGCCAACAAGCAACGGATGAGCGCTAA
CGCGCGAAAGCCCCATTCAATAAACGTAAGGTGCTAACGCCTTTA
Right flanking sequence: Indices 835059 -- 835558
GGTGTAGTGCTAACGCAACGCCTCCACTTGCGTAGTAGTTTGCAGGATGCCGGCCGAGATGGAGC
TGGGAGCCAACCTATACTTTCCTGGGGCTTGCCTTGCCCCAACATCTACACCAGCGGGCGCCGAA
AAGGAACCAGCCCAGCCTCTTCAAGAAAGCTTTGCTTGGTAGGCGCTGCCTACTTACTCGGACAA
TGCTCTAAACACTAAAGTATGCTATGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGC
GTCTCGGAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGGGGACCC
CGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCA
GATATGGTCCGGTATTCCCTTGTTCCCCGTATTGGTTATGTTCCTCATTCCTCGTCTAGCAGAAA
CTAATCGAGCTCCGTCTGATCTCCCAGAAGCGGAAGCTGAATCAG
Found at i:866086 original size:18 final size:18
Alignment explanation
Indices: 866063--866097 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
866053 AGGTTTCAAT
*
866063 CAACAAGCAAGGGATGAG
1 CAACAAGCAACGGATGAG
866081 CAACAAGCAACGGATGA
1 CAACAAGCAACGGATGA
866098 ATTGAATAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.20, G:0.29, T:0.06
Consensus pattern (18 bp):
CAACAAGCAACGGATGAG
Left flanking sequence: Indices 865563 -- 866062
GGTGCGGCTTACTCTAGTCAATCTATGTTAGTAAGAAAAAGGGTTCAAGCTAGCGCCTTGCTCAA
GAGGTTTAGCAAATGAGCATTCACTTGAGGTTTGCAACCCTAGTTGAAGTGGAATAGTCAAGATG
AAAGCAGTTTCAAGGGTGCTTCCTCAAGGTTGTTTACTAGTGAAACAGGAATCTCATAGGTGACA
AGAAAACCTACAGCAGTGCGAGTGCAAAAGCCTTACAGCAACAGCAGTGCGCTTTCCTCGAATCA
GCAAAAGCCTTAGAGCGACGGGCTTGCCCATGAACTTGAGGAAGACATTCAACTGTCAAACATCA
ATGAAAGCTATAGCTGTGCTCCAGTTTTGCGGGTAAAGGTTATACGGTGAAGAGCCCTTGGTCTT
AAAGGGCAAGGCGACCTTCTTAATTAAATTAAAGAAAACATTCGGGACATAAAAGCCTATGGTAA
TCTCTAATCTCGTCCTTAGTTGCCGAATTTGTTGAAGGTTTCAAT
Right flanking sequence: Indices 866098 -- 866597
ATTGAATAGTAGCGCGCTAGCGCGAAAGCCCCAATTCAATAAACGTAAGGTGCGTTAGTCACGCC
CTTTATATATATAGGGCGTTTTCTTGCTTCTTAAAGTCCATCATCTCCCACGAATGGCCAATCTC
ATTTCACAAATGGGCCATTTATCCATTCAAATGGCCCAGATGGTCCAGATGACCCAGTCCATGGC
CCAAACCATGACTCAATCAATGGCCCAGACTATAACCCAGGCAGTGGCCCAGGTGCTAGCCCCTT
GGTCAAAGGGTCTGCTATCATCATGCTGGTGCTAATGTGATCTATCGACACTAGATGATCTTCCA
CAATTTCCTTCAAAACATAGTACTTTACGTCTATATGTTTCAACCTGCTAGACGACTTGTTGTTG
TTGGAGAAGGCAAGGGCTGCTGAGTTATCACAGTAGATCTTCAGCGGTCTAGAGATAGTACCCAT
CACCTGAAGTCCTGTGATGAAGTTCCTCAGCCAAATAGCCTGGCA
Found at i:890596 original size:23 final size:22
Alignment explanation
Indices: 890554--890605 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
890544 AAGTGAAGGA
890554 GAGAAGCTAGATCTATGCCTAT
1 GAGAAGCTAGATCTATGCCTAT
*
890576 GAGAAGTCTAG-TCTTTAGCCTAT
1 GAGAAG-CTAGATCTAT-GCCTAT
890599 GAGAAGC
1 GAGAAGC
890606 CTCTATGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (22 bp):
GAGAAGCTAGATCTATGCCTAT
Left flanking sequence: Indices 890054 -- 890553
GACTCCGTAGCTTCCTCTGCTCGAGTGAAAGCAGCTGTTCTGACTTTCTAGTTATCTGTAAAGTG
TAGGAGCAAGTAAGACAGTACTAATATCACCAGTAGAGTCCTCTCCCCTTCGTCTATGGCCTTCG
GGACTTGACTGTAGTTCTAGCAATCCAGCTAGTCTTAAAATTCGCTGTTATCTGCAGTTATCCGC
AGTTCTTGAGTTGATAGGAGCTGTTATGCTTTTCTGGTGAGCTTTCAGCCTATTAGCAAGTCACC
CCAGGAACCTTCAATAAGAAAGAGAGGTAAGCACACACGGAACACGAACACAATGCGATCTCAAC
ATCTTTTATGGGTGGCTAGAGAGGCGAGGCGCGGGAAGAGAATGCGAGATTGAATAAGCCGTCCT
ATTCCTTTGATGGGACGGACAAGCTATAGCTATAGATAGAGTGGCAAGGAGAGATGGGTTATAGG
ACACAGGCTCAAGAGACGTGCCTATATGACTCGGAAAGTGAAGGA
Right flanking sequence: Indices 890606 -- 891105
CTCTATGAGTAGATTCTACCATGCCAGGTACAGTAAAAGTCTTTACCACATACAATTAAAGTGAA
AGTCTTTATGATACAGTCTTTATGAGCAGCATACCAGTTACAGCCCTTACGACAGATTGATTGAG
AAAAAGAACATTTCTACCGGTCCGGTGCCATCTTGGAACAATCGTGCTGTGAGGTGCCCTGCTCC
TCAATTTCTTCTATCACTCAAGATAGAGGAGGTAAAAGTAAGAAAGAAAAGGCTCCCCAGGCGGC
GCGCTAGGATAAAAAAGAAAGATCGATAATTTGCGGGGTTCGTCTTCGCCATATGTCGGCTTTTA
TTGATGCTGCCGAGGCCCTAAATTATGACTTTATTTTATTTTCCAGGTATGATTCCGTTGTCTTC
GTAGAGTTAAAGGGTATTCCATTTACCCGAAAGCTCAACCGTTTCGTAACAGGGTAGCCGTACTT
GAAGGTGAAACTAAATGATTCTGTGCCAGTCGTTACAGCTTGCTA
Found at i:892345 original size:28 final size:28
Alignment explanation
Indices: 892301--892356 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
892291 TGGATTCCAG
* *
892301 GCCCAATTCTTTTGAATTAGCTATAAGT
1 GCCCAATTCTTTGGAATTAACTATAAGT
892329 GCCCAATTCTTTGGAATTAACTATAAGT
1 GCCCAATTCTTTGGAATTAACTATAAGT
892357 CAAGCTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (28 bp):
GCCCAATTCTTTGGAATTAACTATAAGT
Left flanking sequence: Indices 891801 -- 892300
TAAGCTGATAATAGTCCTTTACTTGATTTAGTATATAGCTAGGCGTATGGAGAAGCCTATTTGCC
AAGCCTTGAACTTGAAGGAAGTGCACGTGTAGGCGAGTACCCTGGGGAATAGAAAGCTTGGTAGT
TCCAGCTTAGCAGGTGGAGTCGCCCTTCGCCACCAGATGAATAATTAGCAGGAGATGGGGTCTCG
ATAAGAGGTTTCGAAAGGGATTAGTTCATTCGCTGGAATGGTCTCGGAGATGGCTTATCTTCCCT
CGGATGGAGCTTCTTACCTTCCGTTGGAGATGCAATATATGGCGAGAGGTTCCATGGATCCATTA
GTTGGTTCCGGTTCCTCGCTAGGGGAGAGATCCGCATTGATAGGACATGGAGATGTGGGCTCAGA
AGGGAGTTGAATAGAGGAATTTTTTAGCTTAGATGCCGCCACTAGAGGTTCACTTGCTTACCTTG
TCGGGTCACCAGGAGAGGTCGGTCGAAGGTTGCATTGGATTCCAG
Right flanking sequence: Indices 892357 -- 892856
CAAGCTTGTCGACTATCAAAGGCTTCGAACTTCTTCTTTCGATAGGAACGATCCGCACCATGTGG
TGCCAAACTTCTACCTTATAGTTACTACCTTTGGTAATCGCCCCCTTTTCAATCGGGGTTGACTT
TTGAGACAGTTTATCCAGCTTATTACGATGAAGCATCGTGAATTCACATGAACATAGAGTAACCT
ACTTCGCTTCCATAGAAGATCAAAGACACCATTCTTTCTCCTTGAGTCGATTCCGCGTTGGATGA
GTCTAATTCGATGTCGAAATCGAATCAATATGCTTAAGACAGGCCTTTTGTTTAATAAATAGGTT
TCGCCAAACACGAAACTGAACGAGCTCTTTGTGTGCCCTACGGCTGCATAGGTTCTTTATCTTTC
CCCGGATATACTCTCAACTGCCTCTGCTATCCTATCAACAGGTCAGTCAATATCAGTAGTGGAGG
AAGAAGAGTAGTCCCCTGGTCATCAGTTAGTAGTTGAATAATCCC
Found at i:907739 original size:16 final size:16
Alignment explanation
Indices: 907718--907749 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
907708 TTCACTCAGT
907718 GTGGAATAGCTCTAAA
1 GTGGAATAGCTCTAAA
907734 GTGGAATAGCTCTAAA
1 GTGGAATAGCTCTAAA
907750 AGGCTAGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (16 bp):
GTGGAATAGCTCTAAA
Left flanking sequence: Indices 907218 -- 907717
TTGATTCATATAAGTGGGGGAGAATGTCACAGTCTTGTATATAGAGTCCATGTCATTTTCCTTTG
CTTTAGTACTTCATTTTTCAATATGATATCAATCAAACTACCACTAACCAGAGGGGAAGCCTTAC
TTCCTCGATCCATTCACCACAAGGCATCCGTCTTCCTAACTTCATCAATCCCCGTTTCGTGTAGA
GCTAGACTTTAACGGAAACAACCGATTTGTCAATATAAGGAATGACTGTAATCGTTTGTAGTGAT
CGATCCTCGGGCAGTTAACTATGAGATGAAGCAGCTATACTATAGTTAGTGTTTTATAGGTGATA
AGGGATGCTACTACTTCCTCGTCCTCGGGTTGGTTGATGTCGGAGCAAATAAGGCAGAAGGAAGT
TGCAGAGTGAATGTAAGGCTTGTTATGAATAGTGAATGTAAGGCTTTGTTCAGAGTATAATATCT
TCAAATCAGTTCAAGCCGTAAAGGGATGGTTATGATTCACTCAGT
Right flanking sequence: Indices 907750 -- 908249
AGGCTAGTCAAGGATTTGATGAAGAACTTGATCTACGGATGGATTTCAAGCTCGGCACCTTTAAG
GAGCTTTCCTGTATAAGCGAGTCATTGTAGCCATAGAAAAGCACAGGGTGAAGGAGCCGAGTGTA
GATAATGGTGTGCACTTCCTTGCGGTAATGGGAATCTGCGGATGCCTCTCGGTATGGAAAAGACG
TGCAGGGAAATGTGAGAATGAATTAGATCTCTACGACTACTGAGTGAACTTAGGGCTACTACTTG
AAGGGGTGGATCGCTTCACTCTAGAATACGAGCTACTATCCCTTAGTTCGAATGCTTTTCTGCTG
GATTTCTTTACTAAAATGATAACCAACATCTATGCTATGCCCAAAGCGCCAACCAAAAAGGGCTG
ATTCTCGCCATCTAGGAATCTAGGATTCCCGGTCTGGGATCGATCCCTTCTTTATAGTCTAGTAG
CCCTTCTGAAACAAGATTCAATAGCTGAAACAAGATTCAATTGTC
Done.