Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_050960
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 504715
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:19820 original size:13 final size:13
Alignment explanation
Indices: 19802--19832 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
19792 CCTAGAAGAG
19802 CATACCATATTAC
1 CATACCATATTAC
*
19815 CATACCATATTAG
1 CATACCATATTAC
19828 CATAC
1 CATAC
19833 TATCTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.29
Consensus pattern (13 bp):
CATACCATATTAC
Left flanking sequence: Indices 19302 -- 19801
TGCCCAGCTGAAAAACTACTGCAGCAAGAAAACAAATAATAAGAAAGAACATCGTCCGCTACTCG
GATAGGAGAAAGAGAACTACTAGGATAGCAACTCAAAACTAGCTACTAGCTACTAGGAGAGGAAG
TCCCACATCCAAGAAAAAGAGCTACCTAATCCGTTCCAATCTGTCTTTGCTTTCCTTTCTTCCTA
GTGATAGACCTTGAGAAAGGAAAGGAAGGGAAGCTACATCTAGAAAGCAGGAGATAGATTCTATA
CTACATGCAACTAGCAACAGAAAAAAAAAAAAATGATCGATATAATACCATTCTTATATGGCCTA
GCTTGCTCTAACCATAAAGGAATTATTAAACATCCAACTACCGAGCTATAAGAAGAGAGCTACTA
GCAGCTAGGCTACATTCCCATCTAGCTACTATAGCTAATAGAAAGGGCAGACCTTAGCTTAGTAT
GGAGGGCAGACTACCTTCTTACAGAGTGCTCTATCCCTAGAAGAG
Right flanking sequence: Indices 19833 -- 20332
TATCTTTCTTTGGAAAATGGTATGATACTCGATCCAGATACCTAGCTACTAGAAGAGGAATAATA
GCAGATAGCTTAAAATGCCTAATGGAAGGGAATGCTGGGCCTAACCCCAGAAGGAAAGACTTTAG
ATTCGCTAGCTCGGTAAGAACAATCGGAATACAAGGACGCAAGGACGGGACCGGGCTAGAGGACT
CTCTATCGTCCCCATCGTCCTAACAGCCGATCACGCAATTAGAGCTACGAACAGTTTGATTGTTC
TTGGGCAACAGAATCAGTAACACAATCAGGGGTACCGGGCTTGCCTCAATATCGGGATAGAAGGA
GGTCTAGGAAACTAGGCTGTTGACCGGGCTAAGGTAACGAAGTTAGACCGAGATGAACGACTGAC
TTCCTCTACAAAAGAAGTTGTTGAATAAGATGTGGGAGAGCCATGCCCTTAGAACAGGCTCGAAG
GAAGGTTTTTATTCCAGCTGAATCTGTAGGAAAGTCTGAAACAAA
Found at i:37202 original size:20 final size:19
Alignment explanation
Indices: 37166--37207 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
37156 GACGATCTGG
37166 CTAATTATATATACTTCTAT
1 CTAATTATATATACTTCT-T
37186 CTAATTATATACT-CTTCTT
1 CTAATTATATA-TACTTCTT
37205 CTA
1 CTA
37208 TTAGAAAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 16 0.76
21 1 0.05
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (19 bp):
CTAATTATATATACTTCTT
Left flanking sequence: Indices 36666 -- 37165
TCAAATGGTTTGAGCTTGGAAGCAACCTACTATCTATCGATAGGCGAGAACAGACTGCTATTGGC
TGCTTTGCCTATCTATTCTATTATGACTGGCTTGGAGACATCAGAGGAAGACCATTATCTCTATC
CGGGTACGATCATAGCTTCATTCATTCGTTGAACCTTTGGGATAACCATTAGCATTGAGGTCAAT
CACCACACCACCTCTATCATACATACGACATTACATGACGCGAGAGTGCATGGTCAACACACACC
TAAAGCGCCTACGTTCCGCTTGCAGCCAATACAACCACAACCTAACTTGCACGAGATTCAACAAC
CGAAACTACTGGTAGTCCCGAGGGGACGGCATCCTCCTATAATAGTTAGCAGTACTGAACAAGCG
AGTCATCGGTCCGGGGAAAGAAAAGGACCGCCTTTGAAAAAAAAGTAACTCGCTTAACTCGCTAG
GCCTTCGGAACAAAGGTGATTCTGTTCATGCTTCAGACGATCTGG
Right flanking sequence: Indices 37208 -- 37707
TTAGAAAGGCGAACCCATAGGCCTGTTTTAGCGCGTTTCCAAAGGTAAGCGGTTAGGTTGACTTT
GTCACTTTCTTCGCATCCATAGCGAGTGGACCTAAGGTACAGTTACGACTGGGAGATAGCAAGAC
TCACTGAAGAGTTCGAGCGTATAAGAAAAAAAAGAAAAAATAGATATTACATTCCAAGAGAGGGG
GTGAGCACACTAACTAAAGATCTGACCCAATAAGCCGCAGGCATACCAATGATAAAGCGAACAAG
CAATGGATTGACGACGGAAAGGCCCTACTTACTTAATCAGCCAATCTCGTTACATCTAACCAATT
CGACCTCAGACTAATGTCGGGAATGGATCTAAGAAGAGAAAAAGGTACGTGCCGACCAAAGACCG
GATGTCCCTATTCCTGATTCGAGATGCAAAAGCAAAAGCTGATTCGCTAAGCATTCATGCGCGAA
CCTAGTTTCATAAAAACTAAGAGATTCGCGTTACCAGACCAGTCC
Found at i:58523 original size:31 final size:33
Alignment explanation
Indices: 58481--58552 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 33
58471 GCAAAAGGTA
* *
58481 TCCGGATGCCT-GGGGCTTAGGAC-AATGAGCG
1 TCCGGAGGCCTGGGGGCTTAGGACAAAGGAGCG
*
58512 TCCGGAGGCCTGGGGGGCTTTGGACAAAGGAGCG
1 TCCGGAGGCCT-GGGGGCTTAGGACAAAGGAGCG
58546 TCCGGAG
1 TCCGGAG
58553 TCTCTTAAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
31 10 0.29
33 11 0.31
34 14 0.40
ACGTcount: A:0.18, C:0.22, G:0.43, T:0.17
Consensus pattern (33 bp):
TCCGGAGGCCTGGGGGCTTAGGACAAAGGAGCG
Left flanking sequence: Indices 57981 -- 58480
TTCGGAGATCAGGTAAGTTAGGTCTACTACTGCTTGACTGGAGTTAGCGAAGCCGTAAAAGGTGG
CAGTAGGGGAACCTGCTGCTGGAACAAATCCTGCTTTTTTTAATTCGGGACTAAAACGAGGCGAC
TACTCTTTTACTATGGTTTCAGAGTCACAGTTGCTAACGGGCAAATGCGTGTGTACTAGTGCTTG
CTCATTAGAGGATGCCCCGGTAGTCAGTAGGGGGCTAATAACTTGAGTTAAAAGTAGTAGACGAT
TAGAGTTATCTTATATAGGCTATTTGCGCTTAACGAGTTAGAAGATGTTGCCAATGACCGGGTAT
CGAGAAGAGTTGGATGCGAACCCCTCCCATGAGAAAGAAGCCTAGCAGCCCCGATACGCCGAAAC
CTCTTATTCCGGTCCTTAGGCTAACTACGACTAGTCAGGAATTGCGTACAGAGAAGAAACGTCGT
AAGTAACAATAGCGCAAAAGCACGCGGCGGGATCCGCAAAAGGTA
Right flanking sequence: Indices 58553 -- 59052
TCTCTTAAGAAAGGAAAAAACATAACTTAATTTATTCATGCCCGTAAATATCCTTCGACCCTATT
ATACTTTCTTTACCATGGTTATATGTCATAAACTTAGCCCCTTACTATTGATTATGGTTTCAGTG
CTGTGGAAACTTATTCTTATTCCGTTGTTGTTTTCTTGGAATTTGCACTTAGGTATTTATTTATT
CGAAGTATCGAGACAGGATTTGTTAATGTCCTTCATGGACAGTGCTCCTATGCCGCTCGAAGGCA
GTGTCGCCCCTTCCTCCCCGGGGTCATCCGCAGACCAAGCGGGCCCTTCTAATGCAGGCCTCGCT
CACTCGCCCGCGGGATCCTTTCCTTCCGTCCCTTCGGGCTTATCTCCCATCCCCGACTCCATACC
GTCGGTCCCCTCCTTACCATCTCTAGATAGTAATGATGGAGAGCAGTCGGTGAATCAGAGGGAAG
CAAGGCCTGCGCTTCCCGCTAATCCAGTCGCTTCCCGGGGGGAGG
Found at i:88797 original size:11 final size:11
Alignment explanation
Indices: 88759--88789 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
88749 TGGGGCACTT
*
88759 CACTCGCTCAA
1 CACTCGTTCAA
88770 CACTCGTTCAA
1 CACTCGTTCAA
88781 CACTCGTTC
1 CACTCGTTC
88790 TTCACTCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.23, C:0.42, G:0.10, T:0.26
Consensus pattern (11 bp):
CACTCGTTCAA
Left flanking sequence: Indices 88259 -- 88758
CTTATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATCCG
TGCTGGACCGATCGATATACCAATAATCAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAAC
CTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCTCATTCCAATCTTGTCTAAC
TTTGCTAACTTCCCCTTCTCAACCCGTATCTTCTTTGTTCTGGAAACACGTCTTCCTATTCCATC
TTTTCTCGAATCTCCCTTAACGGAAGAAATAGAAGCTCGAGAAGGAATACCAAAACCTAGTTCAC
TCGCTGAGTCTTTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCTATACCAACCTAATAAA
GAGGCAAATTCGTAGGTTCGATTCCTGCTGGATGCACTTGGAACGTTCAGTTCAATTGCTGCTCA
CGGAATTTATACATATAGCTCGACCTTATAGCTTATGGGGCACTT
Right flanking sequence: Indices 88790 -- 89289
TTCACTCGCTAGGGAAAGAAAAGGGATAGATGACTGAAAATCCCGCTTAGAGATCGCAACTATAG
TCAGAGTAGGAGTTCCCATCCATCATCTCCGTCGAGGCCTCGTTTTACCTTCAAATTGCGGTGGA
TCCGTCGGATTGAAACCTCCATTAGATTCGGCAACTAAGGACGAGATTACCATAGGCTTTTATGC
CCCGAATGTTCTCTTTAATAAGGTCGCCTTGACCGGGCTCTTCACCGTATAACCTTTACCCGAAA
AACTGGAGCACAGCTATACTTTCATCGTTTTCACTAGAACCAGAGTCATAGGGGCACTTTTTGTT
TTGCCTTCCTTAAGTCCAGGGACGACCCCCTATGTTTTTTCGTGGAGCGCAGAATTTGCCTTAAT
CGGCGAGAGTATATACAATCTATGCCACTGGAAAGAGTATGATTGGGGGCTTTATACTGTAGTCT
GTAACTCTTCAATTGGTTATTGGCTCTACCTCCAGCCTCTTCATA
Found at i:103075 original size:16 final size:16
Alignment explanation
Indices: 103056--103093 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
103046 TTATGCGGGT
*
103056 GGGAATCATAGCGGAA
1 GGGAATCAAAGCGGAA
103072 GGGAATCAAAGCGGAA
1 GGGAATCAAAGCGGAA
103088 -GGAATC
1 GGGAATC
103094 TTCGCTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.39, C:0.13, G:0.37, T:0.11
Consensus pattern (16 bp):
GGGAATCAAAGCGGAA
Left flanking sequence: Indices 102556 -- 103055
GTTTTTCAGTTCACTAAACGTTAAGTTTCAAAAACCCCGTAAATTGGGCTCGAATCAGTTTACCG
ACCGAAAGCGGAAGTGAAGCACGCCACTACTTATGTTTACCGGTCCAATGGGAATAAATCAGATA
GTTGTTATAAATAAGTTATGATGAGATGCCGAAGACTACTAGACTAGTAAGACGTCCGGGTGGTC
CGGTAGCTGGAAGCCTGAAAGCCGGGCTGCAGTTTTGGTGGACACGTTTAGGGCGTAAGGAAAGG
AGTCTTTTGTTTTCAGGTGTGGTATTCTAAGCCTATCCGTTTCGAGACCCCAGTTAGGTTTAGGG
CTTCACAATTCCAATCTGGAACGTGCTTTGCGGATGATTTATCATCTGAACTTATCGCTGAAGGG
TATGGCAAGTATACGTTCATGAGTGAGAAGAGACTTGTGACTCTGGTTTAGGTACAGATGTACTC
TAAGGCGATCGTAGTGAGGCGATCTCCGTGAGGTGTTATGCGGGT
Right flanking sequence: Indices 103094 -- 103593
TTCGCTTTTAGTTGCAGTAGTTGGTCAAGTCAGGTGTCAAAGGAAAGGTCAGGCCTCACTCAGGT
AAGGTCAGAGGCTTAGTAGTTGAACCTCTATTGTAGGCGTTCAGGTCTCCTAGCTAACGGCATTA
AAGCTCAGGTTCGCCCCGAGTGGAAAAGGTAAGAAAAGTCTTGGCTACGGAGGGAAGTAAGCAAG
AAGTTCTGGTTGCGGGCTAACGTAACGGCTTTCAATCGTGTAGTTCAGTCTGGGCGTAAGGCCTA
TCTATAGTCCGGTCGGAAAGGAAAGGCATCAGTTGTTGGGCTAGTAAGGGCGGGCATTTTTATCA
GCAACTCACTCTCTGGAGAATTGCTTTGCCGCCGGGGAATCTTGTTAGCAATAAACTATCGAATT
CGAGGCCAGAGCGAGCAGCAATTTCGAAAGATATAACAAGAGGGGCCGGATATCTTTTAACAGTA
AAAAGCTCGAAGCGAAAGTGGGCCGAAAAGGATCCTTAATTCAAA
Found at i:105167 original size:16 final size:16
Alignment explanation
Indices: 105112--105169 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
105102 TCTAGTCCTT
105112 GTTATAAGGTT-CCGA
1 GTTATAAGGTTCCCGA
*
105127 GTTAT--GGTTTCCGA
1 GTTATAAGGTTCCCGA
* *
105141 GAGT-TACGGTTCCCGA
1 G-TTATAAGGTTCCCGA
105157 GTTATAAGGTTCC
1 GTTATAAGGTTCC
105170 GAAAGATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
13 4 0.12
14 6 0.18
15 7 0.21
16 17 0.50
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (16 bp):
GTTATAAGGTTCCCGA
Left flanking sequence: Indices 104612 -- 105111
TCATGCCCGCCCCTTTAGTGAACGTGGCCTTCTCCCTCGAGTCGTCGATGCCTTCAAGAGCAACC
ATCGGTGTGGGCAATGGCTGAGAATAGTTGTAGGTAGGGGAGGCAGTAGCGCTTAAAGTTGACTT
CCCACCATCCGCGCAAAGCCAACAGGATAGAGAAAGCCAAAGCCAGGTGCCAATGTCAGAGCTGG
GCTCATATACTCCGCTTGGTTACTCTACTTGGGTTGGGCCATACGTGTTAATATATGATATCGCA
TTGAGACGTCCTTTCCATGGCAAGTACAAACTCCCACCACCTTTCCCTTTCACTGCTATATCCAA
TAGCCTAGCTCTACTCTCTGTGCTTAGCCTCTCTGTAGTGCCGAGACTCTATGTAGTGCGAGTTC
AAAAGGTATCCATTCTTGTCAAAAGAAAGAGAAGAAGAAATAGGCCTGACTTCTAAGAGCTCCGG
CACAAAGCTATAAAGCGAATAAGCTAGCTAGTCCTTCTAGTCCTT
Right flanking sequence: Indices 105170 -- 105669
GAAAGATAAATCCATTTAAATATGAGACTCGCATGGAGACGTTTAACTTTTCCCTTTTAATAGGA
TAGGTGATCCATACCCACCCATTCCCTAAGTAGTACACAACTTGAATTGAATCTGTTTTTTTGGG
GTTGTTTTGGGGATTTCACAAAACCTTATCATTTGGCTTTTTGCCTGGAGCACAACCTCATTTTT
ATGGGTTAGAGTATGTCCAGGGCACATAAATGGATTTTTTTCTTTATGAAATAGGCCATTTCATG
AGCTTTCCCTAGGTGTTGTTGGTTGGAAAGCCTACTTCCCCCCATTGAGGTTGGAAGGAAAGAGA
GTTCCCCATTGAGTGCATGTGGACTTAAAACATATGATACTTGCATACCTAATTTTGCTCTGTTG
AACCGATACTTACATTACTTGTTACCAATGAGTAGTCTGTAGAAGTAAGTACTTGCACTTGCCTT
AGACTACTTGCCTGTAGTCTCTACTCGCATATAGTCAGTTAACTT
Found at i:138062 original size:24 final size:24
Alignment explanation
Indices: 138016--138063 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
138006 GCAGAAACCG
* * *
138016 GGTTTGGTAGAGACTGGACCTCTT
1 GGTTTGATAGAAACGGGACCTCTT
*
138040 GGTTTGATAGAAACGGGATCTCTT
1 GGTTTGATAGAAACGGGACCTCTT
138064 TCTACGTATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (24 bp):
GGTTTGATAGAAACGGGACCTCTT
Left flanking sequence: Indices 137516 -- 138015
TATCAGTGCGGTAATGCCTTGCATCGCGCTATTGCCTTTTCTCTGCGCGCGTTTCGCTATTTGCG
CGCAATAGCTTAGTTTACCTGTCTTTGCATCTTCTTCCGATTCGGCGGGAACTGCTTCCCCACTC
GAGACAACCTTCTACGAGAGGTAAATTTCCTTTGCTTTTTCGATCCAGCACCTTACTCTAGCGGA
GTGCAACCAGCAGAGCAGAAAAACCTTCCCACTAGCTGAACAATCCACGCCCCTGATAGTGGAAA
AGGCACTAAACAGGGCACAAAACCTGTGACATACTGCGCAACGGGACACCCAGGCTTCAGAGTCA
TAACTTCTACTCGGGATGTCAGAACACCAACCAAATCGGAAACCGATTCGAGTCGGTCTGTCGGA
GGTACCACAACAACTCAACCGGATCTTCTTGGCTATTCTGTCCTAGCGACTGCGTCTCCTTATCC
CTCTGTGGGTGATGGCTTCGAAACAAGTGGCTTCGGCAGAAACCG
Right flanking sequence: Indices 138064 -- 138563
TCTACGTATGCCTCCTCTGTTTGTTGGATTTGTAGGGACCAGGATATTCCTATTCTCATGCTTCT
TTATCTTTTCCCACCCACCGCCCTTCTCCTCAATTTAAATAATTAAGCAGCCTTGCGGTAAAGCC
GTTTATATCGCTAGCTAGCATTTATCTTTTTAGGGTCGGGCGAGCAACCCGTTTCGCCCATTTTT
CATCCAAACGAGTTAGTCCATTTCGGATTTCCGGCGAACGGTATAGTGGACGGGGAAGAGCTCTA
TCGTCTAAATTCCCTTTCGATGGAATGTCGTCTTGTCAGCATATACTTCACCGGGTCTTTATGGG
CTATCACGTACCGTACGCTTGTCGTGGTAAGAAGTAGGGCCTGAGTTTCAATGCATCGAAGGCCA
GGATTTCACCTTCGGATAGCTTTGCGTTGGCTCACTTGCTCCGACTTACGAAACACGCTTCGCTG
TCTCGCCCAGAACGCTGCGGGTCAGGCACCCCCCGTTGCATCAGA
Found at i:163092 original size:21 final size:21
Alignment explanation
Indices: 163012--163086 Score: 114
Period size: 21 Copynumber: 3.6 Consensus size: 21
163002 GCCAATACCC
* * * *
163012 GCAATCAAGTCATACTCAACT
1 GCAATCAAGTAATAATCACCA
163033 GCAATCAAGTAATAATCACCA
1 GCAATCAAGTAATAATCACCA
163054 GCAATCAAGTAATAATCACCA
1 GCAATCAAGTAATAATCACCA
163075 GCAATCAAGTAA
1 GCAATCAAGTAA
163087 GCATCAACTG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.45, C:0.24, G:0.11, T:0.20
Consensus pattern (21 bp):
GCAATCAAGTAATAATCACCA
Left flanking sequence: Indices 162512 -- 163011
CAAGTAGTTCCTTCAGCTGTGAGTTATAGCTCAGTAGTGAAACCCAGAGTTCTCGCTCAGTAGTT
AACCCTGTTGTTACGTCCGCTTTGAGTTCAAGGGTGTCATCCTCAGCAAGGAAGGGTCCTCTTGG
AAATGTACCCTGCTCCTTCTACGGCTGCTAGTATCCTTGTTCTTCTACTCGCAGGCAGGGCTGCT
CTTGCTATTGTTGCTAGGGTCCTCTTCTCCTATTGGTTGCTAGTCTCGGGCTTCTAGGACAAAGT
GTAAAGATAAGAGTTAGAGTTCTTCCTCTTTCTCCTCTATGAGGAATGAAGTGAGCCGGCTTCGG
CCAACGAATGAAGTTCTTTAGTAGGTTATCCGGGCATAGTTGAGTTAGGAGCGAGGGAGTTGGAG
TTCCATTTACTAGCTATATCCGCTAGTATCCTATTCTTCTCGGGAAAGGGCAGTTCCAACTAGGG
CTAGAGGACGGTCACATTCCTATTAGTAGGTTGAGGCCAATACCC
Right flanking sequence: Indices 163087 -- 163586
GCATCAACTGCTTTACCGAGTTCAAGAAGAACAGTTCCTTGAGCAGATGTGATTGCAAATCTTCT
TCATTCATCTTCTTGGTCTGCTGAATGAATTGATCCCTGTTGTTCGAGCGCATGCTATTCTTTTG
CAGTTCCCGCTGGAGTGACGTCTTCCGGTCTAAGGCGAGCAACTACCGCTGTGTAAAGATCAACT
CCTGCTGCTATGAGTCTCGTCTTCGTGTAGTTCCCGGCTGCTAAGGAAGAAAGACTGGCGACAAA
GACCCATAGACTGACTAGCTACCAGAAAAGAAAGAAGTAGGGCAATAAAATAGCGGGCTATGTAA
ATAGATGGGCTCACGCTCTCCACCTGGTAACCCCTCCCTTGATATGATAGTAGGAGTCCCTGCTA
TGGCACTATCTGACGTTAAGACGAAGATGAGGGGTTCTTCTGCTTCTTCCCTATCCAGTTGAGGT
CTCTCGAGCCAGCTTGTCTGGTTTATCGGTCCCCCCATAATAGCA
Found at i:190483 original size:21 final size:21
Alignment explanation
Indices: 190457--190517 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
190447 CTTGGAAGTA
190457 ATGAAAATAGTAAGTTGAAGG
1 ATGAAAATAGTAAGTTGAAGG
190478 ATGAAAATAGTAAGTTGAAGG
1 ATGAAAATAGTAAGTTGAAGG
* *
190499 ATGAAATTAGTAAGCTGAA
1 ATGAAAATAGTAAGTTGAA
190518 TGGAGGAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.48, C:0.02, G:0.26, T:0.25
Consensus pattern (21 bp):
ATGAAAATAGTAAGTTGAAGG
Left flanking sequence: Indices 189957 -- 190456
AAGATCACGGCTGCATTTAGGAGTGATCTTTCCCTCTGTGCGTAGAAAAGAAAGGTTTTGATTCG
AGCGAGGAGCTATGACAATTGCCCTCGTGGATGGGGAAGGAAGAGAGAGCGTCACCCAAATTATC
ATAAATAAAGAGAGGAATCCATTCGCTCTTTTCTAACGGAGTTCCGCACCAGGACTCAAACCATA
CCTCGAGGAGAAGGTAGCTGAAAGAGCGCTTCCCCGAGAGACATGGTTCGAAAGGGTGCATCCCA
TGTCTTTCTTGGTTGGAAAAACCCAACCGGCTATTTTCGTCTTCCTTCATTGGGATAGTAAGAAG
AAGTCTCTCTTTTTTTTGGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACAAAATGCTTACCTT
TCGCGCCGGGATCTTCTACTTTTCTGATAGTTCATCTTTTCATAGTAGGAATTACAGGAATTTGA
ATTCAACCGCTAATACGAATGATGATCGTAGTGATCTTGGAAGTA
Right flanking sequence: Indices 190518 -- 191017
TGGAGGAAGTCTATTTAGTAATCTGAAAGAATTATTTAATGTAGATCGAAACTCTTTTTTATTGT
TATTCCTTGTTATTATAATAGTGGGCTTTTATGTGTGGATGGGCATTGAAAACCAAATCAGGGCA
AAGAAGGCCTTCGAACACAATAGGAATCTCGGCCTTCCAGTCGAAGTGTGGAGCGGTTGGCAAGG
CCTTTTCGTGGGAGTTGCTCCTAAGGCGGATAGCGCGGGAGTTGCTCCTAAGGCGGGCATCCCAC
CAGTGCCCGCTCCCGAGCATACCGAGAATGCCAAAGTTGTGGTTAATAGCCCGCTTGAGCAATTT
GAATTCCCCCCAATTACTCCTGCAGCGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACC
TATGATGCAAGGAATAACAGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTT
TCGTATTGTGGGGCTTGTTCTGCCTTAAGAAAAACTTCTCGGAAA
Found at i:208094 original size:17 final size:17
Alignment explanation
Indices: 208072--208113 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
208062 TTATATATTC
*
208072 TAATATATATATAAATA
1 TAATATATAAATAAATA
208089 TAATATATAAATAAATA
1 TAATATATAAATAAATA
208106 T-ATATATA
1 TAATATATA
208114 GGCCAGCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAATATATAAATAAATA
Left flanking sequence: Indices 207572 -- 208071
CTAACAATGACAAAGGCTTGTGCGAAACTAAGTAGGGCCTTTTGAATGGAATCTTAAGTAATCTA
TCAGTGGTGCGAAGCGGCTTTGCCCCTTTTCAGTAGGGGAGCGAAAGGTTAGACCTTAGAAAGTC
AGCGAACAGCGGTTCTTCTATGTAGGTATGGCGTTCCCCCTTGACTCTCCTAACGTCGAGCTAAG
TGACTTCGTAACCTTTGCGTAGCGTAGTAGAATGAAGGCTACGCACCGACGCTCTCTTATCTATT
AGCCTAAGCGTCTTCGCTAACTCGCTCGCCTACTATACTATACAATACATTAGTAGGGTAGGCTA
GGCTAACTCAGCCGCTTACTTCTACTAATGTAGGGCTAAGTAGCGCCTTTCCTTTTTTAATAACC
CATTCTCATTATCTTTCATAAGTCAAGTAGGCGAACGTATAGGTCTTTAGTAGCGTTGACAAAGA
AGAACAGCCGGTTAAAAGACAGCGAATCTTTTTATTTATATATTC
Right flanking sequence: Indices 208114 -- 208613
GGCCAGCTTGACAAGCTACCCTTCCTCTTGATCTGAGGTGCGAAGAGAAACATCTCTTTTTTATG
ACTTCCACTTATCGATCCTGGCCCGGAAAAGTGACCGACCAGGGCCCTATTGATGAATGAAAGAG
AGGGTTTATGAGCCCTAGCCCTGTAAGCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGG
CACAAACCCATTTTTGACCTATTGGTCCTAGTATCATAGGCGACCGAACGGCCGCCTCCTAATTA
CTAGACCAACCTGCTATAATAATTCCATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAG
CCCTATGTTCGGATCTGACAATACCATACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGAC
TTAACATAAATGTAGCCACTGGAGCCATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATA
GGTTCTTTTAGAATCAATTTCAAACCATCTGCTAGAGGTTGTAAC
Found at i:208829 original size:39 final size:39
Alignment explanation
Indices: 208770--208848 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
208760 AGATTTTCTA
*
208770 TTCACTCATGATCTGACCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGACCTGGTCGACCCAATCATGATAT
*
208809 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGACCTGGTCGACCCAATCATGATAT
208848 T
1 T
208849 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGACCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 208270 -- 208769
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCTCCTAATTACTAGACCAACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGGCCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACAGCTATGTACGTTTTAGATTTTCTA
Right flanking sequence: Indices 208849 -- 209348
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGTTGAAGATGGTGCAACATCG
AATCCTCTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTTTACTGCATAAGG
GCATAAACGAAGTCAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTC
CACAGATTTATGGTTGATGCTCTGAGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTCCGCTGCC
TGCGTTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCCAGCTGTAATGGTTGAAAAT
AGGGGGCCAACCAAGACCCCCTAATAAAGCTTTGTTCGATAAAGCAAACGATTCGTTCCGACAAC
TTCGGACCAGATTAACCCCTTTGAATTAGCCGATCTTACAAAATCGATCGGGCGGGCTGGTTGGG
AAGGGGTTATTAGCGGAGAAAAGAATCGCTGAGAGATAGATTCTA
Found at i:225322 original size:15 final size:16
Alignment explanation
Indices: 225294--225330 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
225284 AAGAATTCCT
225294 CTAGTAGCTTCCTATC
1 CTAGTAGCTTCCTATC
225310 CTAGTAG-TTCCTATC
1 CTAGTAGCTTCCTATC
*
225325 CCAGTA
1 CTAGTA
225331 AGTGGCTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.35
Consensus pattern (16 bp):
CTAGTAGCTTCCTATC
Left flanking sequence: Indices 224794 -- 225293
CTAGCCTCTTTGTAGTTCCTAATAGTAGCTAGTAGTGCTATCCCAGTAGCTAGTGGGAAGCTATC
TCCTGGCTGTGCTTCTATTTCCCCCAGTGTCTTCTAGTCTGAGTAGCTAGCCTTCCCTATCCTAG
CTGCTAGATGGTAGCTCTTCTTCTTTCTTGTCAGTCTGATGTAACTACGGGTGGCTTTCTTTCCT
TAAAGTTCTGGTAGTTGAGGTTGAGTAAGGGTAGTGCAGCTCGGTCCCTCCTAGCAAGAGGGATG
AGCGTAAGGTCTAAGGGTTGCCTGTAGTTTCTGTTTTGAAGGTTAGAATAGATTGGATTGGATCT
GTCTTCTCTTTTGTAGTCGTAGAGCGGGCAAGGGGAGTTTCGGGATATCTATACCTGAGGCAGGC
TGCTACTTGACTGTAGGGTTATAACAAGCAAAGCCAGATAAGAATGTTTTAGATTTAGCACTGGT
AGTAGCTAGGCGTAGGATGTAGCTTTAGGATGTTTAAGAATTCCT
Right flanking sequence: Indices 225331 -- 225830
AGTGGCTAGGTTGTTAGAGAGCAGCAGACAATCTTATGAAGACAATTCTTTATAAGACAATCTCA
ACATTGTCTGCTGTTAGATAACATTGTCTTGTATCTCCTATAGGTTTATATCAAGATAGGACGTA
TAAGACTGTATTCTATCACTACGCCTTCCTTCTGTTATACCTCTAAGGGTAATCCCCGCTCTAAC
TCTATTTAAGTAATTGGAGTATAATCTTGTGTTGGCAGTTAGCTATCGATGAGCGATGAAACCAC
ATCAGTGTGCGATCATCACTTTACGAGTTTCTGCTTTCTCTTCTTTTTTCTTTAAGGCCTCTCTT
AAGGCTTTGAACGCGACTTTCTCTATCCTCATTAGGGTAGGTACTACTTCCTGTAATAAGTGTAG
AAAGTATGCTCTCTTTTCCTCCTTAGTAGCTAACTGAGAGTTCATCTTGCTTCTCTAGCTCTACC
AATCGCCAAGAGAAGGGCAGACCATCAAAAATGGAAACAAAGGCA
Found at i:240975 original size:26 final size:23
Alignment explanation
Indices: 240920--240985 Score: 123
Period size: 23 Copynumber: 2.9 Consensus size: 23
240910 TATAGATACA
240920 GAACTTCTTCTTCACTCCTACCT
1 GAACTTCTTCTTCACTCCTACCT
240943 GAACTTCTTCTTCACTCCTACCT
1 GAACTTCTTCTTCACTCCTACCT
*
240966 GAACTCCTTCTTCACTCCTA
1 GAACTTCTTCTTCACTCCTA
240986 TAGATATATC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.18, C:0.39, G:0.05, T:0.38
Consensus pattern (23 bp):
GAACTTCTTCTTCACTCCTACCT
Left flanking sequence: Indices 240420 -- 240919
AGCGGACTTGAAACAAATACCCGATCGTGCTATTCTGAATGGGAGGAGGGGGACTCTTTGAAAGA
CAAATACCAAGTCGAGCTGTCGGGGAAGAAGAATGCAGGCGAACAGAAGAAGAGTCTTCAAACAC
AAGCAAGTAGTTGCCTTTGGATACCTGCGAGCTGACTCAGAAGGGCCCCGCTCTTTGGAGCAAGG
ATGGCCGCCCCGAAACAGCACTGACGAACAAACCCAGCCGACTGGCCCTAGTGAACTCCTCCAGC
CAACAGCCCTAAGAAAGTCATAAGCGCTTAACTCGAGGGTTATTGTCACTTAACTTCGTCAAGCC
TGCCTTTAAAGTCTTGACGAGCGCTACTCCACTACAGTTTCGCCTCCACTCAATCAGCCACTTAG
GTTTGGCGAAGTGAACATGAACGCGTTAGTGACGTAGCAAATTAGAATATCCAAGCCGGTAGCCC
TCCCTTCCGAGCCAGTCTCCTTTTACCTTCACTACTATAGATACA
Right flanking sequence: Indices 240986 -- 241485
TAGATATATCTATATCTAATTTCTTTCTCGAATTTGTAGGCAGTGGTGCATCTTGTGGTTGAGCC
AGGGCGTGGTCAAAGGGAAGGATCGTCAAGACTTGACATGCGACTCAATGCTATTGATCCCTATC
ATCCGAACGAATGTCTTGTATTGGTTTGGATCATCCGAGCGAGATCACATCTTATTCTATGCAAT
TCTGTTTGTCATTGATCTGCGTCCACACCGCTTCCCCAGGCACATGCACCACCCCTATCTATGGA
AGTAAAAAACGAGAGCCATGTAGCCCAGCCGACCGGAGACAAGACCGAGCCAAGGCTTTTCTAAA
GGGATGGCCTAATAGGCTGTTCTTAGTCAAACCTGCTGGATACTGGATAAAGGGGTATAATGGGT
GGGGATTAGCTATTAGGGGTATCTTTCCCATGCGTTTTTCTGTAGTGAGATTGACCATCGGGTCA
GGTAGAGCCATATGGGCACGTTCAGGTCTCAAAGAGAAGGTTGGG
Found at i:253422 original size:19 final size:18
Alignment explanation
Indices: 253390--253425 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
253380 TCTTTATAAT
253390 ATAATGCTGCATATGAAA
1 ATAATGCTGCATATGAAA
*
253408 ATAATTGCTGTATATGAA
1 ATAA-TGCTGCATATGAA
253426 TTTGCGACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (18 bp):
ATAATGCTGCATATGAAA
Left flanking sequence: Indices 252890 -- 253389
AGAACGTGGAGGCACCATCTAGAACGTCCGAAACATATTCTTCCTATCTTGCTCCAGATGTTCGA
GCTTCTGACGCTGCCGAAGCAGTAGTGGGAGCAGCAGCCGGGCGTAGTAGAACGTATGAAGCCTA
GCATTTTTGTGCCTAGAAAGAAAGTAAAGTAATTAGACGAACTTAATTCTCTTTGCCCGGCCCGC
GCCCTCTTTTGAAGCATGGGGATTTTTTGGTGAAGGTTAAGAGGGTGTCGCTGATAGCTTCCAAA
ATCAAACCACCGGAAAACTACCATAGACGTGCTACGCCCGGCCTTGAAAAACCGGGTTTTTTTGG
CTCAGATGATATGATATGTCTGTAACGGAGTCTTAATGCCAAGCCAGGTGGTGATCCACTTTATA
TCTCCTATTCGGGGTCTGCCCCGTTCTCAATTGTTTATAGAGATCGGCCTTGTTCAATAAATGTC
TCAATCAAGTCGTTGCATAGAAAGAAGCAGCACATTCTTTATAAT
Right flanking sequence: Indices 253426 -- 253925
TTTGCGACCATGCCAGGGGAGGGGAGGCGTTCTCTTCCGAGATGATTTCTTTGGTCTGTTGTCCT
CCTAAGAAGGATATACAAGCTTGTGAGGCTAAGGGCTCGTACTCTTTCTTCTGAAGGTGCAGATG
GAGGCTTATTGGGAAGAGGAAGCAAGGGCGCGCATCTGCTATTCTATTCGTTGACCAGTGTCCAG
TCGGTCGAAACGGAATAAGAGTATCAAAGTCTACAAGGTGGATAAGGCGGCTTGTTGGGCATTTC
TCGGATAAGAGGCTATGTCAAAGGCACAAATTACCTACCTATACCTTGGAAGGTGTCAAGATACG
TGAACAGCTCAGTTTCAACTATATAACGAATACAAAAAGGGTGTAGTTTAGGAGTCAAGAGTACT
TTGGACTCGTCACATGACGATGATTCTGCTTACGAATACGAGTATACTATCTGCTTACCTTTAAA
ATACGAAGAATCCTCTAGCTTCCTCCCCTCCGTCAAGGCTATGGG
Found at i:262073 original size:18 final size:18
Alignment explanation
Indices: 262050--262117 Score: 109
Period size: 18 Copynumber: 3.8 Consensus size: 18
262040 ATAGCAGCTT
262050 CTGCTTCAGTTGATTCAG
1 CTGCTTCAGTTGATTCAG
*
262068 CTGCTTCAGTTGATTCCG
1 CTGCTTCAGTTGATTCAG
*
262086 CTGCTCCAGTTGATTCAG
1 CTGCTTCAGTTGATTCAG
*
262104 CTGCTTCCGTTGAT
1 CTGCTTCAGTTGAT
262118 GCGGTTGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.13, C:0.26, G:0.22, T:0.38
Consensus pattern (18 bp):
CTGCTTCAGTTGATTCAG
Left flanking sequence: Indices 261550 -- 262049
AGCGCGAGTTCTTCACTTGCTTGATAGACGAACGAGTCGAACGACCACCTACGGCACTAACGGCT
ACAGCTACTGATACGGAAACAACTTCCACTTCCACTGAACCACCAACTTTCATTGGAACTTGCCC
AGCTGAGAAAACAACTTAACTCGTAAAAGCTGTTGACTTTGAAACCGTTAGCTTTGAGTGAGATG
CTGCCCCAACCTTAGCTGATAAATGCCCAACCTACGAACAGCTGATAACACGACTTTATTATACT
ATTGTGAAATCCGTGGGCACGCCCTTCGAGCTTTCCCTTCGAACTTGCCCTTGACGCTTTGCCAA
CCACTGGCACTTTGAAACCGTAACCTCTTGTTGCTGGCTTTCTGGCAGGCTTGCCTGTTTGCGTG
CTTGCCCTTCTTGCCGATAGCCCCACGCCTTTAGGCCTAGTACGCACGACTTGCCTTTTCAATCG
TTATTGAGTTAGATGCCCCACCAACAACCACCGAAATAGCAGCTT
Right flanking sequence: Indices 262118 -- 262617
GCGGTTGATTCTGCTTCAGTTGATTCGTCTGTTGATTCCGCTGCTTCAGTTGATGCTTCCGTTGA
TGATGCAGATTCGGATTGAACTTCCACTTCCACTGTCACAGGAACAGGACCACTTGTAGTGCCTG
CTTGAAAGTTAGTAAGGTCAGTCTAAGGCTAACAACGGTAGGCATTTTCCGCTCACAAATAAGGG
GTTTTGAAACGTGTTAGTGGCGTGCTTGCTTCACTTCAAAGTTATTAGGTTTTTGACTTCTTTCG
TGCTCTTCGAGCTTCACCGGGCGTAGACTTTCATGTTGATTCCCCTTCTGCCTTACCACCTTACA
AATCTCCTGCCGCGGGTTCAGAAGCTCCTCCTGGTCCTCGTCGCTCGGGTCAACTCCTCACGGAG
CTAGCCTCACTCCTTTCTACGCTCTGGCACAGCTCCGATCTACGCTAGCCTACACTAGCCCACCC
CTGTCTTAATTCCTTTCGGTAAACCACTTCTATGTATGCCAAAAA
Found at i:262075 original size:9 final size:9
Alignment explanation
Indices: 262050--262110 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
262040 ATAGCAGCTT
262050 CTGCTTCAG
1 CTGCTTCAG
* *
262059 TTGATTCAG
1 CTGCTTCAG
262068 CTGCTTCAG
1 CTGCTTCAG
* * *
262077 TTGATTCCG
1 CTGCTTCAG
*
262086 CTGCTCCAG
1 CTGCTTCAG
* *
262095 TTGATTCAG
1 CTGCTTCAG
262104 CTGCTTC
1 CTGCTTC
262111 CGTTGATGCG
Statistics
Matches: 36, Mismatches: 16, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.13, C:0.28, G:0.21, T:0.38
Consensus pattern (9 bp):
CTGCTTCAG
Left flanking sequence: Indices 261550 -- 262049
AGCGCGAGTTCTTCACTTGCTTGATAGACGAACGAGTCGAACGACCACCTACGGCACTAACGGCT
ACAGCTACTGATACGGAAACAACTTCCACTTCCACTGAACCACCAACTTTCATTGGAACTTGCCC
AGCTGAGAAAACAACTTAACTCGTAAAAGCTGTTGACTTTGAAACCGTTAGCTTTGAGTGAGATG
CTGCCCCAACCTTAGCTGATAAATGCCCAACCTACGAACAGCTGATAACACGACTTTATTATACT
ATTGTGAAATCCGTGGGCACGCCCTTCGAGCTTTCCCTTCGAACTTGCCCTTGACGCTTTGCCAA
CCACTGGCACTTTGAAACCGTAACCTCTTGTTGCTGGCTTTCTGGCAGGCTTGCCTGTTTGCGTG
CTTGCCCTTCTTGCCGATAGCCCCACGCCTTTAGGCCTAGTACGCACGACTTGCCTTTTCAATCG
TTATTGAGTTAGATGCCCCACCAACAACCACCGAAATAGCAGCTT
Right flanking sequence: Indices 262111 -- 262610
CGTTGATGCGGTTGATTCTGCTTCAGTTGATTCGTCTGTTGATTCCGCTGCTTCAGTTGATGCTT
CCGTTGATGATGCAGATTCGGATTGAACTTCCACTTCCACTGTCACAGGAACAGGACCACTTGTA
GTGCCTGCTTGAAAGTTAGTAAGGTCAGTCTAAGGCTAACAACGGTAGGCATTTTCCGCTCACAA
ATAAGGGGTTTTGAAACGTGTTAGTGGCGTGCTTGCTTCACTTCAAAGTTATTAGGTTTTTGACT
TCTTTCGTGCTCTTCGAGCTTCACCGGGCGTAGACTTTCATGTTGATTCCCCTTCTGCCTTACCA
CCTTACAAATCTCCTGCCGCGGGTTCAGAAGCTCCTCCTGGTCCTCGTCGCTCGGGTCAACTCCT
CACGGAGCTAGCCTCACTCCTTTCTACGCTCTGGCACAGCTCCGATCTACGCTAGCCTACACTAG
CCCACCCCTGTCTTAATTCCTTTCGGTAAACCACTTCTATGTATG
Found at i:262124 original size:27 final size:26
Alignment explanation
Indices: 262094--262173 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
262084 CGCTGCTCCA
*
262094 GTTGATTCAGCTGCTTCCGTTGATGCG
1 GTTGATTC-GCTGCTTCAGTTGATGCG
*
262121 GTTGATT--CTGCTTCAGTTGATTCGTCT
1 GTTGATTCGCTGCTTCAGTTGA-T-G-CG
262148 GTTGATTCCGCTGCTTCAGTTGATGC
1 GTTGATT-CGCTGCTTCAGTTGATGC
262174 TTCCGTTGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
24 12 0.27
25 1 0.02
26 1 0.02
27 16 0.36
28 1 0.02
29 1 0.02
30 13 0.29
ACGTcount: A:0.11, C:0.21, G:0.26, T:0.41
Consensus pattern (26 bp):
GTTGATTCGCTGCTTCAGTTGATGCG
Left flanking sequence: Indices 261594 -- 262093
CCACCTACGGCACTAACGGCTACAGCTACTGATACGGAAACAACTTCCACTTCCACTGAACCACC
AACTTTCATTGGAACTTGCCCAGCTGAGAAAACAACTTAACTCGTAAAAGCTGTTGACTTTGAAA
CCGTTAGCTTTGAGTGAGATGCTGCCCCAACCTTAGCTGATAAATGCCCAACCTACGAACAGCTG
ATAACACGACTTTATTATACTATTGTGAAATCCGTGGGCACGCCCTTCGAGCTTTCCCTTCGAAC
TTGCCCTTGACGCTTTGCCAACCACTGGCACTTTGAAACCGTAACCTCTTGTTGCTGGCTTTCTG
GCAGGCTTGCCTGTTTGCGTGCTTGCCCTTCTTGCCGATAGCCCCACGCCTTTAGGCCTAGTACG
CACGACTTGCCTTTTCAATCGTTATTGAGTTAGATGCCCCACCAACAACCACCGAAATAGCAGCT
TCTGCTTCAGTTGATTCAGCTGCTTCAGTTGATTCCGCTGCTCCA
Right flanking sequence: Indices 262174 -- 262673
TTCCGTTGATGATGCAGATTCGGATTGAACTTCCACTTCCACTGTCACAGGAACAGGACCACTTG
TAGTGCCTGCTTGAAAGTTAGTAAGGTCAGTCTAAGGCTAACAACGGTAGGCATTTTCCGCTCAC
AAATAAGGGGTTTTGAAACGTGTTAGTGGCGTGCTTGCTTCACTTCAAAGTTATTAGGTTTTTGA
CTTCTTTCGTGCTCTTCGAGCTTCACCGGGCGTAGACTTTCATGTTGATTCCCCTTCTGCCTTAC
CACCTTACAAATCTCCTGCCGCGGGTTCAGAAGCTCCTCCTGGTCCTCGTCGCTCGGGTCAACTC
CTCACGGAGCTAGCCTCACTCCTTTCTACGCTCTGGCACAGCTCCGATCTACGCTAGCCTACACT
AGCCCACCCCTGTCTTAATTCCTTTCGGTAAACCACTTCTATGTATGCCAAAAACCACTTATATT
TATGCCTTTTAGACCGGGTTTCATAACGGATCTGAACTTCTAACT
Found at i:262621 original size:22 final size:22
Alignment explanation
Indices: 262593--262634 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
262583 TCCTTTCGGT
*
262593 AAACCACTTCTATGTATGCCAA
1 AAACCACTTATATGTATGCCAA
*
262615 AAACCACTTATATTTATGCC
1 AAACCACTTATATGTATGCC
262635 TTTTAGACCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (22 bp):
AAACCACTTATATGTATGCCAA
Left flanking sequence: Indices 262093 -- 262592
AGTTGATTCAGCTGCTTCCGTTGATGCGGTTGATTCTGCTTCAGTTGATTCGTCTGTTGATTCCG
CTGCTTCAGTTGATGCTTCCGTTGATGATGCAGATTCGGATTGAACTTCCACTTCCACTGTCACA
GGAACAGGACCACTTGTAGTGCCTGCTTGAAAGTTAGTAAGGTCAGTCTAAGGCTAACAACGGTA
GGCATTTTCCGCTCACAAATAAGGGGTTTTGAAACGTGTTAGTGGCGTGCTTGCTTCACTTCAAA
GTTATTAGGTTTTTGACTTCTTTCGTGCTCTTCGAGCTTCACCGGGCGTAGACTTTCATGTTGAT
TCCCCTTCTGCCTTACCACCTTACAAATCTCCTGCCGCGGGTTCAGAAGCTCCTCCTGGTCCTCG
TCGCTCGGGTCAACTCCTCACGGAGCTAGCCTCACTCCTTTCTACGCTCTGGCACAGCTCCGATC
TACGCTAGCCTACACTAGCCCACCCCTGTCTTAATTCCTTTCGGT
Right flanking sequence: Indices 262635 -- 263134
TTTTAGACCGGGTTTCATAACGGATCTGAACTTCTAACTCCGGGTTTTTCAACTCGGATAAGCCG
TAGCGTCTCCTCACCTAGCTAAGCTAGCCTTTTCACGCCCAACAACTGGAACTCTTTCTTGCCCA
GCGGATAAAACTACTGGGACAGTCTCACCGACTTCCACTTTCACTGGCACAGCGGATAAAACGAC
TTCCACTTCCACATCCACTGGACAAACTACAACCACTGGAACAGGAACAGCTGATCCAACTTCCA
CATCCACTGTCCCCGCTGAGAAAACAACTAGCCCAACGACTGGAACGGGCACTTGCCCAATTTAT
GTTACTCCCGTTACTCCCAAACTGGAACTTGCTTTGCGGAGTTAGAATCTGAACTTCTCACTTAA
AAACTACCCGGCGGAGCACTCTTTCGGAAAGGTTCAGTTTGCCGTGTCTTCTTGCGCGCGAGGTA
CGCTGCTTTGAGCTATTTAGTTAGATAAAGTCTCTGACACCGACT
Found at i:311593 original size:18 final size:18
Alignment explanation
Indices: 311553--311595 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
311543 ACCGCCCTGC
311553 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
311572 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
311589 CATAGTC
1 CATAGTC
311596 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 311053 -- 311552
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGACACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGCGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAATCTTCGGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 311596 -- 312095
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGGGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:314453 original size:17 final size:17
Alignment explanation
Indices: 314431--314469 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
314421 ACAACAAACA
314431 AGCTTGCTTAACGCACT
1 AGCTTGCTTAACGCACT
314448 AGCTTGCTTAACGCACT
1 AGCTTGCTTAACGCACT
314465 AGCTT
1 AGCTT
314470 TGAGTTCCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (17 bp):
AGCTTGCTTAACGCACT
Left flanking sequence: Indices 313931 -- 314430
CAAAATATAGTTTTTATTCAAATCCCGACTCAACCCCTCACCCTGCCTGCACCACAACCACTCAT
TATCCCTTACCACCTCCCGTCTACAATCTTGATAAAGTCCCTTGGAATTAAGAGAAAAGATACGG
AGAAGAGAGAAAGGGAAGATTGTGATGAGATTGGGAACATGACTCGCTCTGGCAGATGTTTTAAG
CCAGACAACCTGAGAACAGATGGAGATAAAGAAAAGGACAAAGAGAAAGAGAAAGGAAAAGGGAA
GGAAAAGACTGATGCTTTTCTCAAGGCAATCCAGAGGTCGGAATAGAATGTGGCCGAACAGTTTA
GCAAAGTCCCCGCCCAAATTTCGATCTTAGGTCTTCTTTTAACTTCAGAGCACCACCGAGAACAA
GCCGAAAGACAGATCTCATCACAGCACTTGCTTTCCCTAAACTATCTATCTTTAGAAGTAGGGCG
AGCTGAAAGAGGGAATTCTCTAATCCGATAGCCTTACAACAAACA
Right flanking sequence: Indices 314470 -- 314969
TGAGTTCCGACTTAAAAGCTCTTAGAAGTTCAAAACCAAAAAAGCGCATCGCTCTCACGCTCGTC
AGTTAAGTTCTTCTTTGGCACTTCACCCACGGGATGTAAAACCCCAGGGGTTACAATGCCACGTC
CAGCAGCCGGTTGATCAAGACCAGCTGCAGACACCAAGAATTCCATGCCTGCAGTCCCACCCAAT
AAGAAAGAAGGAAAGAAATTTCCCTCCGGAACAGATGATAAGATTGGTACTGTATAACCTGTTCC
CTTCAACGCAACCATGTCATAAACCTTCCACATGAGACCGAACCGTATTAACTTTGGGTCTTTAC
GATCCAGGTTCCAGTTTCGATTTACGACAGGTGCGTCGAAGAACTCTTGAATGGTCACCTCAGGT
CGTAATGCCTTACCATAGTACCAGTGAACATAGGTAAGCCATTGCCGGACCCACACCCTCAAAGA
TGTGTACTCAAGGAGATCTTTGACCGGAGGAGTTGGAAACAAATC
Found at i:400125 original size:30 final size:30
Alignment explanation
Indices: 400066--400131 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
400056 GGAGGCATAC
* *
400066 TAGCAGGGGATTCGTACTAAGAGCGGTTATG
1 TAGCAGGGGATGCGTAC-AAGAGCCGTTATG
400097 TAGCAGGGGATGCGTTA-AAGAGCCGTTATG
1 TAGCAGGGGATGCG-TACAAGAGCCGTTATG
400127 TAGCA
1 TAGCA
400132 TCTGAGAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 17 0.53
31 13 0.41
32 2 0.06
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.24
Consensus pattern (30 bp):
TAGCAGGGGATGCGTACAAGAGCCGTTATG
Left flanking sequence: Indices 399566 -- 400065
TTCTTCTGAACTCTCACAAAAGAGCTTACTCTCTTTCGAAAGACCGGATACGGTTAGATCTAATT
CTAGCACAACCGATTCCTCTTCTGCCTTTTGACTCTCTCCTGCTCGAAAATGAACTCAATCTTAT
ATGTAGTATTCCCCTCGTTTCATGGTTTATATATCCTCCAAGAGCGCTTATTCTCCATCAATTGC
GATAATGCCGCATCTAAGAGCCTATTCATGTGCAGCCTACTCGGATTAAGGAAAATCCGGTGCAG
TGCTTGATAAACTTTCGATGCCCGCCTAATGTGCTTCTAGCTGGAAGCAGCCAATCCAATCCCAT
TAAAGGATATTTAACCCTTAGGGCGGATCCTCCTCTCTCTACTGGGATTGACTCGCTTAGAAGGA
GTCCCATTCCTTTGGCAAAGGCCCTAACTACAGCTCTGAGTAACTCCTTGTCTCATTGATCCAAG
TCATCAAGGAAAGACAGTGACGATCGGTACGAAAGGGAGGCATAC
Right flanking sequence: Indices 400132 -- 400631
TCTGAGAACAAGAAAGCAGACATGCACACGAAAAGACTTGCAAGAGTAAGGTAAGGCTTGACTTT
ACTAGTCCTCTCGCTACGACCCTTACTCTTATAACGGGTTACACATGCCACCCGCTTGCTTCGCT
TCAAGTTTGAATGCCCAAGGTTTAGAATCCATGTACAGTCCCAGTCACGAAGAAGCAGTCCCGTC
CTCTCTTAATGAGATATCTCTATCTGTCTCGTCTTATCCTGCAAACCGCTTATTGGACAAGGCAA
GAAAAGCCTAAACCGTGCGTACCCCTTACTCGTACAAAAACGATTTCATTGGCTTAATGGCAGCA
GTAAGAGCGCATTCCTTGTCCGATTCTTTACTATGGATTCATGTGTCAAACAGCTCCTTCTCGGC
ATCAAGACCGACCCGTCGAAAACAGCCTAACAAGGCAAGGCAAGAACAGTAGATATTCCCCCAAC
AGGGCATTCGTGAACAAGAGGGCATTCCCTCACAGCTGATTCTCA
Found at i:414171 original size:63 final size:63
Alignment explanation
Indices: 414090--414233 Score: 281
Period size: 63 Copynumber: 2.3 Consensus size: 63
414080 AGTCACCCGG
414090 GAAA-AACGTGGCAAGTCCCAATCCACAAACATGCTACTTGGTCGATCAGAATAGTGACTTGA
1 GAAAGAACGTGGCAAGTCCCAATCCACAAACATGCTACTTGGTCGATCAGAATAGTGACTTGA
414152 GAAAGAACGTGGCAAGTCCCAATCCACAAACATGCTACTTGGTCGATCAGAATAGTGACTTGA
1 GAAAGAACGTGGCAAGTCCCAATCCACAAACATGCTACTTGGTCGATCAGAATAGTGACTTGA
414215 GAAAGAACGTGGCAAGTCC
1 GAAAGAACGTGGCAAGTCC
414234 TGATCTAAAG
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
62 4 0.05
63 77 0.95
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (63 bp):
GAAAGAACGTGGCAAGTCCCAATCCACAAACATGCTACTTGGTCGATCAGAATAGTGACTTGA
Left flanking sequence: Indices 413590 -- 414089
CCAACCATCGCATTAGCGAGGGCGGTATGCCCTCCCCTAGTAGTACGCTCAACCCTTGCTTCTTT
CATGTAATGTAGTCAGTACAACTATTTTATTCCGTACCGTCACCGTTCCTGACGGTACTCCATGG
AATCTAAGTCACTAGACATAACGAAGTGTGCCAACTCTTTCTGCCCACGGGCCGTTGTGTGATCC
TTAGTTTGCTTGCTCATCCGTTGCTGCTTATCTAACTAAGGCTCTCTCGACTGGCTTGGCACTTG
ACCCCTTGTTGTTTCGATCTTGTAACATCCGGTTGTTGCCTATTTCATTCACTAAGGCTCTCTCT
CTTGACCGGATTGGCATTGGGGAGTGAAGGCGACTTGTTTGACTGGGGAAGTTCGCCCTAGGTTT
CCGATTGGAACTTCTTTCTCGTTCTCGCCCGGTTCGCATTGAGGAGGATGGAAAGAACGAAGCGG
AGGGAGTACGCTTTCGTTGCCCAACCAATCAGATCAGTCACCCGG
Right flanking sequence: Indices 414234 -- 414733
TGATCTAAAGATGTTGCTTGGAGAAGGTGGCAAAAGAGCGAAGCGAGGGAAGAACAGCCTAATGA
GATACGGGGACTAGTGAGCCAGTTGACGAAGCTACTGTTGGAGCTGCCTCATTAGAGAAGGGGCC
TGCGCTTGCCCCCATTCCTGCAGCCTCCGTTTGCGCTGCTGCTTCCTTTATTCGTTCGGGTAGGG
CTAGGTAAGTGAAAGAGAGAGCATGGGACTTCATCACCTGCAAGTGAAAGGCGTAGTGTACTTGT
TCATGAACGGCATATTCTCCTTCAAGAAGTGAAGTGCCTACATCCAAACAATATTCCTCCCTACT
ACCGGTCCCTCTTGCCAATTGGTTCCCTCCATACGAAGCGAAGAATTACCTCCCTCCCCCACTGG
TGTTATCTCCCCTGCCTGCCTATGAAATTGCCCCGGCGCCCTCCCTGCCCAAATGGTCTACTATC
CGTCAGCTGCAAACGAAGGTGATAAGTCCTAGGCAAAGTCCGGGT
Found at i:428195 original size:22 final size:22
Alignment explanation
Indices: 428167--428212 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
428157 GCTGTCTGCG
428167 CGAGTCACCTTCTTCTAGGCTC
1 CGAGTCACCTTCTTCTAGGCTC
428189 CGAGTCACCTTCTTCTAGGCTC
1 CGAGTCACCTTCTTCTAGGCTC
428211 CG
1 CG
428213 CTGGACGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.37, G:0.20, T:0.30
Consensus pattern (22 bp):
CGAGTCACCTTCTTCTAGGCTC
Left flanking sequence: Indices 427667 -- 428166
CCAGCTGAAAAACGCTAGCTAGCTAGGCTAGCGCGCAATGGCTTTCTCTGATAGGGGCTCGTTTC
TTCAAGCTCCGCCCAACCTATACAAGGTGCTGTTCGCTTTCTCTCAGCCACTAGTGGCTTATGTA
GTGGTCGGCATTCCTACGTGCCCCTCCTTGCCCCCCTACTTAAGAATCCAAGGGTGACCTTTGGA
TGTTGTCGTGACGCTTTGGTTACGAGGGTTGCCGGGGTCTAGGTTTATGGATGGATTCAGTCAGC
GAAAGTCCCTCAAACTCAATCAATATCAACAACATGTCGTGACCGGTTAGGCTTGGTTGATTTTG
TCAGAAAAGAAAGTAGGTTTCGGGGGTTCATTGATTAGTACACCTCCGGTGCTGGTAAGGTCGGG
ACCGTGGTCGTCCGTCTCCGGGTTGCCGGCCGATAAGATCTCTGAGATTGACCAGCCAGCTGGGT
TGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCG
Right flanking sequence: Indices 428213 -- 428712
CTGGACGACACGGCATTCTCGTTCAAATATAGGCCGGCCGTACTTGTGATGGTTCCCAAGGATCC
AATATGACCACTTAGGTCTACGTTGCCACGATATTGTTCTATGGAAGCGGGCGGGCTGTTAGAAG
TTCGGCCCGGTTTTTTTGGTGTCGTAGGGGAGGGATTGACCTTTTTAACGCATATTCAGTCGTAC
CGGCATGGCCCCACTGATTTGTTTTCGATCAGAGCATCAAGCAGCGCAACCCGGTTCTACTTGAC
TAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCCCTTTTTGATAACAAGGCAG
AAAGCCCCGACCCGACATTCATTAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCAGCAAGCA
CCTACTCCTATCAAAATGAAAAGCGTGACTTTACTAAACAAGCAAGAAAAGTCCTTTACTAAGAA
AATAGATAGGGCTTTTCTCGCTTGTTGCTTTCTTCGCATGCTTTC
Found at i:503986 original size:22 final size:22
Alignment explanation
Indices: 503950--503991 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
503940 CGGTCTAAAA
*
503950 GGCATAAATATAAGTGGTTTTT
1 GGCATAAATAGAAGTGGTTTTT
*
503972 GGCATACATAGAAGTGGTTT
1 GGCATAAATAGAAGTGGTTT
503992 ACCGAAAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (22 bp):
GGCATAAATAGAAGTGGTTTTT
Left flanking sequence: Indices 503450 -- 503949
GAGTTGGTGCGGCATTCGAAGTAGGTGCGGGTGAGGCATTCGAGTTCGAGTGGCTTTGGCAATTA
ATGGCAGAGTTCCTTTAACAATAAGTTCATATGCTTTCACAGGTGCGGAAACGGAAGCAGTTTTA
TACGCAGCAGATACAGAGGCATCAGCTATTTCGGTGGTTGTTGGTGGGCTAACAGCTAGCGGAGT
GAGGAGGAAGAACTATTTTACACCCGAAGCGAAGGAAACCGAAACGAAAGTCCAACTGTCGCAAG
CCTGCGAGAAAGAAGTGTGTAAGGTCAGTCGTTGGGCAAGAAAGAGTCGTTGGGCAAGTCTAAGG
GCTAGTTCCTGTGGAAGTTTCCGCTGTCCCAGTAGTTTTATCCGCTGGGCAAGAAAGAGTTCCAG
TTGTTGGGCGTGAAAAGGCTAGCTTAGCTAGGTGAGGAGACGCTACGGCTTATCCGAGTTGAAAA
ACCCGGAGTTAGAAGTTCAGATCCGTTATGAAACCCGGTCTAAAA
Right flanking sequence: Indices 503992 -- 504491
ACCGAAAGGAATTAAGACAGGGGTGGGCTAGTGTAGGCTAGCGTAGATCGGAGCTGTGCCAGAGC
GTAGAAAGGAGTGAGGCTAGCTCCGTGAGGAGTTGACCCGAGCGACGAGGACCAGGAGGAGCTTC
TGAACCCGCGGCAGGAGATTTGTAAGGTGGTAAGGCAGAAGGGGAATCAACATGAAAGTCTACGC
CCGGTGAAGCTCGAAGAGCACGAAAGAAGTCAAAAACCTAATAACTTTGAAGTGAAGCAAGCACG
CCACTAACACGTTTCAAAACCCCTTATTTGTGAGCGGAAAATGCCTACCGTTGTTAGCCTTAGAC
TGACCTTACTAACTTTCAAGCAGGCACTACAAGTGGTCCTGTTCCTGTGACAGTGGAAGTGGAAG
TTCAATCCGAATCTGCATCATCAACGGAAGCATCAACTGAAGCAGCGGAATCAACAGACGAATCA
ACTGAAGCAGAATCAACCGCATCAACGGAAGCAGCTGAATCAACT
Found at i:504486 original size:27 final size:27
Alignment explanation
Indices: 504411--504490 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 27
504401 ATCAACGGAA
504411 GCATCAACTGAAGCAGCGGAATCAACAGAC
1 GCATCAACTGAAGCAGC-GAATCAAC--AC
*
504441 GAATCAACTGAAGCA--GAATCAAC-C
1 GCATCAACTGAAGCAGCGAATCAACAC
*
504465 GCATCAACGGAAGCAGCTGAATCAAC
1 GCATCAACTGAAGCAGC-GAATCAAC
504491 TGGAGCAGCG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
24 14 0.32
27 16 0.36
30 14 0.32
ACGTcount: A:0.41, C:0.26, G:0.21, T:0.11
Consensus pattern (27 bp):
GCATCAACTGAAGCAGCGAATCAACAC
Left flanking sequence: Indices 503911 -- 504410
AGTTAGAAGTTCAGATCCGTTATGAAACCCGGTCTAAAAGGCATAAATATAAGTGGTTTTTGGCA
TACATAGAAGTGGTTTACCGAAAGGAATTAAGACAGGGGTGGGCTAGTGTAGGCTAGCGTAGATC
GGAGCTGTGCCAGAGCGTAGAAAGGAGTGAGGCTAGCTCCGTGAGGAGTTGACCCGAGCGACGAG
GACCAGGAGGAGCTTCTGAACCCGCGGCAGGAGATTTGTAAGGTGGTAAGGCAGAAGGGGAATCA
ACATGAAAGTCTACGCCCGGTGAAGCTCGAAGAGCACGAAAGAAGTCAAAAACCTAATAACTTTG
AAGTGAAGCAAGCACGCCACTAACACGTTTCAAAACCCCTTATTTGTGAGCGGAAAATGCCTACC
GTTGTTAGCCTTAGACTGACCTTACTAACTTTCAAGCAGGCACTACAAGTGGTCCTGTTCCTGTG
ACAGTGGAAGTGGAAGTTCAATCCGAATCTGCATCATCAACGGAA
Right flanking sequence: Indices 504491 -- 504715
TGGAGCAGCGGAATCAACTGAAGCAGCTGAATCAACTGAAGCAGAAGCTGCTATTTCGGTGGTTG
TTGGTGGGGCATCTAACTCAATAACGATTGAAAAGGCAAGTCGTGCGTACTAGGCCTAAAGGCGT
GGGGCTATCGGCAAGAAGGGCAAGCACGCAAACAGGCAAGCCTGCCAGAAAGCCAGCAACAAGAG
GTTACGGTTTCAAAGTGCCAGTGGTTGGCA
Found at i:504490 original size:18 final size:18
Alignment explanation
Indices: 504467--504534 Score: 93
Period size: 18 Copynumber: 3.8 Consensus size: 18
504457 AATCAACCGC
504467 ATCAACGGAAGCAGCTGA
1 ATCAACGGAAGCAGCTGA
*
504485 ATCAACTGG-AGCAGCGGA
1 ATCAAC-GGAAGCAGCTGA
*
504503 ATCAACTGAAGCAGCTGA
1 ATCAACGGAAGCAGCTGA
*
504521 ATCAACTGAAGCAG
1 ATCAACGGAAGCAG
504535 AAGCTGCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
17 1 0.02
18 42 0.93
19 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.26, T:0.13
Consensus pattern (18 bp):
ATCAACGGAAGCAGCTGA
Left flanking sequence: Indices 503967 -- 504466
TTTTTGGCATACATAGAAGTGGTTTACCGAAAGGAATTAAGACAGGGGTGGGCTAGTGTAGGCTA
GCGTAGATCGGAGCTGTGCCAGAGCGTAGAAAGGAGTGAGGCTAGCTCCGTGAGGAGTTGACCCG
AGCGACGAGGACCAGGAGGAGCTTCTGAACCCGCGGCAGGAGATTTGTAAGGTGGTAAGGCAGAA
GGGGAATCAACATGAAAGTCTACGCCCGGTGAAGCTCGAAGAGCACGAAAGAAGTCAAAAACCTA
ATAACTTTGAAGTGAAGCAAGCACGCCACTAACACGTTTCAAAACCCCTTATTTGTGAGCGGAAA
ATGCCTACCGTTGTTAGCCTTAGACTGACCTTACTAACTTTCAAGCAGGCACTACAAGTGGTCCT
GTTCCTGTGACAGTGGAAGTGGAAGTTCAATCCGAATCTGCATCATCAACGGAAGCATCAACTGA
AGCAGCGGAATCAACAGACGAATCAACTGAAGCAGAATCAACCGC
Right flanking sequence: Indices 504535 -- 504715
AAGCTGCTATTTCGGTGGTTGTTGGTGGGGCATCTAACTCAATAACGATTGAAAAGGCAAGTCGT
GCGTACTAGGCCTAAAGGCGTGGGGCTATCGGCAAGAAGGGCAAGCACGCAAACAGGCAAGCCTG
CCAGAAAGCCAGCAACAAGAGGTTACGGTTTCAAAGTGCCAGTGGTTGGCA
Found at i:504529 original size:9 final size:9
Alignment explanation
Indices: 504456--504530 Score: 51
Period size: 9 Copynumber: 8.3 Consensus size: 9
504446 AACTGAAGCA
*
504456 GAATCAACC
1 GAATCAACT
* *
504465 GCATCAACG
1 GAATCAACT
* *
504474 GAAGCAGCT
1 GAATCAACT
504483 GAATCAACT
1 GAATCAACT
* * * *
504492 GGAGCAGCG
1 GAATCAACT
504501 GAATCAACT
1 GAATCAACT
* *
504510 GAAGCAGCT
1 GAATCAACT
504519 GAATCAACT
1 GAATCAACT
504528 GAA
1 GAA
504531 GCAGAAGCTG
Statistics
Matches: 46, Mismatches: 20, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.13
Consensus pattern (9 bp):
GAATCAACT
Left flanking sequence: Indices 503956 -- 504455
AATATAAGTGGTTTTTGGCATACATAGAAGTGGTTTACCGAAAGGAATTAAGACAGGGGTGGGCT
AGTGTAGGCTAGCGTAGATCGGAGCTGTGCCAGAGCGTAGAAAGGAGTGAGGCTAGCTCCGTGAG
GAGTTGACCCGAGCGACGAGGACCAGGAGGAGCTTCTGAACCCGCGGCAGGAGATTTGTAAGGTG
GTAAGGCAGAAGGGGAATCAACATGAAAGTCTACGCCCGGTGAAGCTCGAAGAGCACGAAAGAAG
TCAAAAACCTAATAACTTTGAAGTGAAGCAAGCACGCCACTAACACGTTTCAAAACCCCTTATTT
GTGAGCGGAAAATGCCTACCGTTGTTAGCCTTAGACTGACCTTACTAACTTTCAAGCAGGCACTA
CAAGTGGTCCTGTTCCTGTGACAGTGGAAGTGGAAGTTCAATCCGAATCTGCATCATCAACGGAA
GCATCAACTGAAGCAGCGGAATCAACAGACGAATCAACTGAAGCA
Right flanking sequence: Indices 504531 -- 504715
GCAGAAGCTGCTATTTCGGTGGTTGTTGGTGGGGCATCTAACTCAATAACGATTGAAAAGGCAAG
TCGTGCGTACTAGGCCTAAAGGCGTGGGGCTATCGGCAAGAAGGGCAAGCACGCAAACAGGCAAG
CCTGCCAGAAAGCCAGCAACAAGAGGTTACGGTTTCAAAGTGCCAGTGGTTGGCA
Done.