Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_040998
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 698138
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:22017 original size:42 final size:42
Alignment explanation
Indices: 21953--22039 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
21943 AGCACGTTGC
*
21953 GCGAACAAGCAACGGACTGAGCGCACGTTAGCGAAAGCCGTT
1 GCGAACAAGCAACGGACCGAGCGCACGTTAGCGAAAGCCGTT
* *
21995 GCGAACAAGCAAGGGCCCGAGCGCACGTTAGCGAAAGCCGTT
1 GCGAACAAGCAACGGACCGAGCGCACGTTAGCGAAAGCCGTT
22037 GCG
1 GCG
22040 CGTTAGCGCA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.28, G:0.33, T:0.10
Consensus pattern (42 bp):
GCGAACAAGCAACGGACCGAGCGCACGTTAGCGAAAGCCGTT
Left flanking sequence: Indices 21453 -- 21952
TGACAGCTAGATTTCAAAAAAGTTACTCCTGCTAACTCCCAGTTGAGGAAGTTTCATGGGATTTT
GGGCATACTCTTCTTTTCCTTCGGCGAGGATACTGTAGTTCCAATCGTTTGAGGAAAGCCCGCTT
TTTGGCATCAATGAAACTCTTTGATCTAGGAGAGAATGCCACTAGATCAAAGACTGAATAAGGAA
AAGATAGAAGACAGGATGTTACTACTGCTCTCCTACTGAAAGAACTGGATTGTACGAGTATCGAT
AAGTAGATTCGGGATGGGAATAGAGAATGCATTTTCTTTTTCTTTTAGCTATTGTTGTTAAGGTT
AAGGCTGTGTGCATTCACTAGCCTAGTGGAAAGAGAGAGTGATCTCATCTCGCAAAAGAGCATAA
GTCGAATTGCGTAAGTGATCACTAAACCTTCGTCTGCTCGAACAAGCAAGGGCCCGAGCGCGCTA
GCGTCTCAAGCCCTCTCGCTTTGCTCGAGCAGCGGAGCACGTTGC
Right flanking sequence: Indices 22040 -- 22539
CGTTAGCGCATCCGTTTTCTTGCTGCAGTTTTTTGATTGCAGGGCGCTAGCTTACTAATAGGGCT
TTTTTCTTTCATCTTTCAGCTTGATCGGAATCGATTCTATGATTGAATAGCAGAAGTGCTACTTA
GTAGTAGAAACTCGGAGAGACAGACAGAGAGGGGACTCCATCCTACCTGCTAACTCCTAGGATGA
GAAGTAGGTCCCTTGTTTTTGGCAGGAATAGTTCCAGCCTTTGTTGCCCCTCGGTAGAGTGAGTC
TACTTAGCGAACTGGCAGGACGCGGAGATCGATTGATCAATATGAATCTCGAGAGTGGATGGTTG
ACCGCCACCCCCTTGTCCTGGAGGCTCTCCGGCCGAGGAGGGGCTTGCTATCGTAACCTTTTCTT
CCGGTGTATGTGAAAAAGAGTGACGAACCCTTTTTTGTTCGGTCATAGGTTGGTGTCCAAAGAAC
GAGAGTCGGCTTCCTTAACTTAAGGGAGTTCTTCCTCAGTAGCTC
Found at i:25519 original size:15 final size:15
Alignment explanation
Indices: 25499--25529 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25489 TTCATTCTTA
25499 AAAAGGAAGATAAGG
1 AAAAGGAAGATAAGG
*
25514 AAAAGGAGGATAAGG
1 AAAAGGAAGATAAGG
25529 A
1 A
25530 TAGAAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.06
Consensus pattern (15 bp):
AAAAGGAAGATAAGG
Left flanking sequence: Indices 24999 -- 25498
GAAAGCACAGTTTTTAGAGAAAAAGGGGATCTTCTTCTCTATAATTCTCCTCTTCATTCTTTTTT
GTCTCTATGTCTACAATCTAAATCTTCGCGATATTCATCTCGTTGTAGTTTTTGTTTTGGCTTTA
GCCGCAGCGGGAGCTATACAATTTTTGTTTCTCAGTAAGACAGACTTATCATTTTTTTTATATTT
TTTGCCAAATGTTTTTTTAGGTTTCATTCTAAGCAAAGAAGGGGAAATCCCCCCAAAAATCACTC
TTTATTTCATTGGTTTTAATCTTTTGTTCCTTATCTCGTTATGGATTATCCGTTTCATTCAGGGA
GAAAAACTCTCAAAGGTTATTTCTGAGTCCAAAACTAGCCTTCGTGCTATTTACTTCTTCCTATT
ATATCTGCTTTTTCGCTTATTTTTGTATAAAGATTATGAGGAGCTAGATGCATGGATTGCTAGCT
TGAATCTGCAAATTCTTATTTTTCAGCTCCTCTGCTTCATTCTTA
Right flanking sequence: Indices 25530 -- 26029
TAGAAAGATAAATTAGTTTAGTATGAAAATGGAAAGACTTTTTCATGGTTTTGTTTTGTGAACCC
GGACCACACCTCTGTGCGCCCTGGCCGGACTGACAGGTTTTTGGCGCCAAAAAGTGAGGGAGAGA
GAGAAATCTCTCGTTAGGTCTTGCTATGGAAGCCGCGGGTTGTCGTCGGCCCGACGGACTTTGGG
AGAAGAATCAAGAAGGTCGCCGACTGCTACTAAGAACCTAACAGAACTTTGAAAACAAAATAAAT
AGCCCCACATACTACATTTCAGACTAACTCTTTTCAACAATAGTTTATGAAAAATCAAAAAAGAA
ACTCTAAAGTCTAGGTGTATTGCCACACACCTGTTCTGGGCCACGTGTCGGCGAATAGCAAAAGG
ATCAGGCAATCTCTTCCTTTCTCTCTATTTGAAGCAAGCTAGAGTAGCGCTTCAAAGTTTGTTGC
TAGGGACTCTATCCCTGCGTCTATGTCGCCGTCCGTTTCCCTTAC
Found at i:65366 original size:34 final size:34
Alignment explanation
Indices: 65323--65390 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
65313 CGAGCAGCTC
65323 AACAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAG
1 AACAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAG
65357 AACAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAG
1 AACAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAG
65391 CCGTTGCGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.35, T:0.06
Consensus pattern (34 bp):
AACAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAG
Left flanking sequence: Indices 64823 -- 65322
TCACGACATGTTGTTTGTTGATATTTATTGAGGAGTTAGCTGACTGAATCCATAAACCGTCAAAG
TAACCGTCACTGGTACTTTTTTTACTCTATAGGTAGGTATAGGTATTGGTGGAGCTTGCGTAATG
TAGTTGTAGTTAAGGCTGCATTGAAGTAGCGCTTTTTTTTTGAAGATCTACTGAAGTACCAAAGG
CGAACGGGGCTCCCAGGCCGGGACGTGACGCAGAATGCTTGGCCTCCCGCGCTTCCAGCGAGACC
CGAAGGGTGAGCTTCTGGCGGTTAGCTTCTAGAACTAGATAAGATAATAGGCATTAGGCATTCTG
AGCTGGGAGGAGGCAAGCAAATGAAGGGAGGAACGTAGTCGCTCGAGCAAAGCGAGAGGGTTGAT
TGAGCTCGACCAAACAAGCAAGGGCCCGAGCGCACGTTAGCCATTAGCCCTCGAGCTGACGCTCG
AGCGACGCTAACGTCTTAAGGCCTCTCGCTTTGCTCGAGCAGCTC
Right flanking sequence: Indices 65391 -- 65890
CCGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCTCGTTGCGCTTCCGCGCATCCGTTTTCTT
GCTCGTTGTGCGTTAGCACATCCGTTTTCTTGCAGGGTACGAAGTATCTCGAGCGAAGCGAGAGG
AAGGTTGGGCCGACTACAAGAAGCTTTGCTTCGTAGACTCGACAAGTCGCTTATAGAATGCCGAC
TACTACTACTAAGTGAAGACTTTCCACTTCATTGTTTAAGGGGGAGGGAAGCGAAGCTTAGCGAG
CTTTATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCGAAGAGCTCCCCTTCATTCG
TTGCTAAGCCAAGGTCCCAGGTCTCCGAGTCAGCCCGCGCTTTTTCGAAGAATCCTGCACCCATG
GGCATACGGCCTGGCAGGCCTTCCCTTTCTGCCGGAGCTTCATGGGCGTTGCCCCGTTCCCCAAT
CAGATGTTTGGATGTGAGCTATACTCCGCGAGGAGCCAAACGGGC
Found at i:65443 original size:31 final size:30
Alignment explanation
Indices: 65404--65488 Score: 125
Period size: 31 Copynumber: 2.8 Consensus size: 30
65394 TTGCGCCTTA
65404 GCTTCGCGCATCCGTTTTCTTGCTCGTTGC
1 GCTTCGCGCATCCGTTTTCTTGCTCGTTGC
*
65434 GCTTCCGCGCATCCGTTTTCTTGCTCGTTGT
1 GCTT-CGCGCATCCGTTTTCTTGCTCGTTGC
* *
65465 GCGTTAGCACATCCGTTTTCTTGC
1 GC-TTCGCGCATCCGTTTTCTTGC
65489 AGGGTACGAA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
30 4 0.08
31 44 0.88
32 2 0.04
ACGTcount: A:0.06, C:0.32, G:0.22, T:0.40
Consensus pattern (30 bp):
GCTTCGCGCATCCGTTTTCTTGCTCGTTGC
Left flanking sequence: Indices 64904 -- 65403
TTTTTTTACTCTATAGGTAGGTATAGGTATTGGTGGAGCTTGCGTAATGTAGTTGTAGTTAAGGC
TGCATTGAAGTAGCGCTTTTTTTTTGAAGATCTACTGAAGTACCAAAGGCGAACGGGGCTCCCAG
GCCGGGACGTGACGCAGAATGCTTGGCCTCCCGCGCTTCCAGCGAGACCCGAAGGGTGAGCTTCT
GGCGGTTAGCTTCTAGAACTAGATAAGATAATAGGCATTAGGCATTCTGAGCTGGGAGGAGGCAA
GCAAATGAAGGGAGGAACGTAGTCGCTCGAGCAAAGCGAGAGGGTTGATTGAGCTCGACCAAACA
AGCAAGGGCCCGAGCGCACGTTAGCCATTAGCCCTCGAGCTGACGCTCGAGCGACGCTAACGTCT
TAAGGCCTCTCGCTTTGCTCGAGCAGCTCAACAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAGAA
CAAGCAAGGGCCCGAGCGCGCGTTAGCGAAAGCCGTTGCGCCTTA
Right flanking sequence: Indices 65489 -- 65988
AGGGTACGAAGTATCTCGAGCGAAGCGAGAGGAAGGTTGGGCCGACTACAAGAAGCTTTGCTTCG
TAGACTCGACAAGTCGCTTATAGAATGCCGACTACTACTACTAAGTGAAGACTTTCCACTTCATT
GTTTAAGGGGGAGGGAAGCGAAGCTTAGCGAGCTTTATAAGGCCGACCACTACATAAGCCGCTGG
CGGAGAAAGCTCGAAGAGCTCCCCTTCATTCGTTGCTAAGCCAAGGTCCCAGGTCTCCGAGTCAG
CCCGCGCTTTTTCGAAGAATCCTGCACCCATGGGCATACGGCCTGGCAGGCCTTCCCTTTCTGCC
GGAGCTTCATGGGCGTTGCCCCGTTCCCCAATCAGATGTTTGGATGTGAGCTATACTCCGCGAGG
AGCCAAACGGGCGTATGGCCTTGCCTTGCCATTTGACCTCTCTTCCCGTGTGACTAGGAATGCTC
AGTGACAACCTCTCAATTGTCACCGCCTGGCCTCTCTTGCTACCA
Found at i:83981 original size:17 final size:18
Alignment explanation
Indices: 83952--83988 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
83942 AAGAAAGGGT
83952 AGGAAGAGAATAA-AAGA
1 AGGAAGAGAATAACAAGA
83969 AGGAATGAG-ATAACAAGA
1 AGGAA-GAGAATAACAAGA
83987 AG
1 AG
83989 CAAAGCGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.59, C:0.03, G:0.30, T:0.08
Consensus pattern (18 bp):
AGGAAGAGAATAACAAGA
Left flanking sequence: Indices 83452 -- 83951
ACAGAGTCAGGGACTAATGGGACTGGGACTGAAAATAGTAAGATAGAAAGTCTGACCTCGGGGAC
TTAGGCTTGCTACTATTTTGCCAACTATGAGTCTGCAGGTCAACTTGCATCTCTGTTCTATAAAG
CAGGTATGCATCCACAGAAAGCACTTTACCAGTTGGGTAGAAAACAGAACTTCGTATATTGGTTC
TATTTGAGAGCAGACTCGCTGCGGTGTATCCTTTGTAGCGCAACGCTCTCTCTAAGTCTTTCTCA
ACGGCGAGCTGCGACTTGGCTATTGCTTCAAACGTCTCATGGTCCCTTTCCGTTAGTAGATCTAA
ATACGGCAAAAGCTGCCATTTGATCTCTTCCAAACGAAAATGGTCGGGGATCAGGGGCCGGTCCA
ACTCCGCCCATATGGTATCTAGTGAAAAAAATGGCACTCCTGCCCCTGAGGAGGATGCCGTTGGC
GGCAAAACATGCAAGCACGACTCGTTCAAGTTAAAAAGAAAGGGT
Right flanking sequence: Indices 83989 -- 84488
CAAAGCGAGAGGCCTTAAACGTTAAGGGTTCTCGACTGGTAAGAAGAGGAAATTGAGACCTCATC
CCTAGCTTCTTTGGCCGAGCGTATTCTAATGCTTTTTTGTCCCTTCACTTTTTCTAGGGCAAGAT
TTAGACTTAATATTCTATTGCAGAGAGGAAAGGAGCGAGAAGAAACTTCCTTTTCACAATCTGTA
GCCGGGGAATCCGTTGTCAGTTCGCGTCCTAAACCCGATTCTTCTGGTCCATCGTGAGTGATTTG
TCAACAGATTTGATAGTAAGGGGTTCACCAGTGCATCGTAGCAGGTAAGAAGAAAGGGAGCAGCT
TTCGCTTCTTCACCAGGAATTTCTATGATAAAGTTGACCGGTAAAGAGCTTCTTTCGCGTTAAGC
GAACATCAGAAAACTTCTATCCTGCCTTGTAATGACTTTGAGCTGACTTAGCTACAGGCCGCTTC
GCTGGGACTTTTGTTTTGACTAGTGAGACCAAGATAATCAACCTA
Found at i:110080 original size:31 final size:31
Alignment explanation
Indices: 110041--110196 Score: 131
Period size: 31 Copynumber: 4.8 Consensus size: 31
110031 TTGCGCCTTA
110041 GCTT-CGCGCATCCGTTTTCTTGCTCGTTGC
1 GCTTCCGCGCATCCGTTTTCTTGCTCGTTGC
110071 GCTTCCGCGCATCCGTTTTCTTGCTCGTTGC
1 GCTTCCGCGCATCCGTTTTCTTGCTCGTTGC
*
110102 GCCTTAGCTTCGCGCATCCGTTTTCTTGCTGCATCCGTT-T
1 G-CTT--C--CGCGCATCCGTTTTC-T--TGC-T-CGTTGC
* * *
110142 ACTTCC-TGCATCCGTTTTCTTGCTCGTTGT
1 GCTTCCGCGCATCCGTTTTCTTGCTCGTTGC
* *
110172 GCGTT-AGCACATCCGTTTTCTTGCT
1 GC-TTCCGCGCATCCGTTTTCTTGCT
110197 GGGAGAGGAA
Statistics
Matches: 105, Mismatches: 7, Indels: 27
0.76 0.05 0.19
Matches are distributed among these distances:
29 4 0.04
30 7 0.07
31 48 0.46
32 3 0.03
33 1 0.01
34 13 0.12
35 1 0.01
36 15 0.14
37 2 0.02
39 6 0.06
40 1 0.01
41 4 0.04
ACGTcount: A:0.06, C:0.32, G:0.21, T:0.41
Consensus pattern (31 bp):
GCTTCCGCGCATCCGTTTTCTTGCTCGTTGC
Left flanking sequence: Indices 109541 -- 110040
CCTTTTGATGGGTGTGCGTTGTTCTTGCGTAAGTTCCAATAACGGAATTCACGTAAGATAAGAAG
TCATCGTTGCTATCCTGCTTTCAATAGTTAGGGATGCTTTCCGCTGCTGTCGAGCTATCTCTATT
TTCAGCCCCGACAACTTATGAGTGAGGCTTTCGGGTCTAAGTCAGAAAGAGGGTTAGACGAAGGT
AAGAACTTGGTTGCCACCTTTGCTCATCAACGTGAATGCCGAGCTTCTGTTTCCGACTTATTCAA
TCCAGCTCTGGAGTCTCCGCCGGATTTTCGGTAATCATATGGTGCTGGTTCATCGATTCCTGTCA
TCCTGTCATGAAGGAATGAATTCGATTCTTATTAGTAGGGGTGGAGGAAAGAAGCAAGGCTTTCA
AAGAGGCATGAAGTTCTCGACTGAACAAGCAACGGCTGACGACGAGTAGGGCGCAAACGCGTCTC
AAGCCCTCGAGCTGACGCTCGAGCCGCTTCGCACGTTGCGCCTTA
Right flanking sequence: Indices 110197 -- 110696
GGGAGAGGAAGTTGGCATCTCCACTCAATGAACTTGGAACGACAATGAGGACGAAGATTTCCCTA
GCCAAGGGGACTGATGAGAAGCCCCAGCCAGTTCGCTACTATATTACATATAGCAAATACACCAG
GCATTGCCGGACACTTTCTCTTTAACCGAAATGGCTCTTTGGGTTACTCGATTGCGAAAACATAG
GTTAGAATCCGAATAAGGGCAAAGGTCCCATCCATCACTGCCCATCTGGACTAGCCTCGCTGTCA
AAGAGCCATAGCAGGATAGGGAAAAACAGAAGTAATCTACACATTATTTGCCTACTCGCTTATTC
CTCTGCTCGGTAGTGCCGTTGAAATTTATTGCATTTCACCCTTTTTTCTAGGATCAGTTAGTTAT
TCTGCCGTCCTGAATGCAATAGCTTCCTCGGGTTTAGTTTTCAGTTTGCTACCCCCGCTTTATCA
GTAATAAGGAAAGCAGCACATTCAAGCATGTAAGGATTCCACTCC
Found at i:110119 original size:36 final size:36
Alignment explanation
Indices: 110029--110179 Score: 176
Period size: 36 Copynumber: 4.4 Consensus size: 36
110019 CCGCTTCGCA
110029 CGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCT
1 CGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCT
110065 CGTTGCG-CTT--C--CGCGCATCCGTTTTCTTGCT
1 CGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCT
110096 CGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCT
1 CGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCT
* * *
110132 -GCATCCG-TTTA-CTTC-CTGCATCCGTTTTCTTGCT
1 CG-TTGCGCCTTAGCTTCGC-GCATCCGTTTTCTTGCT
* *
110166 CGTTGTGCGTTAGC
1 CGTTGCGCCTTAGC
110180 ACATCCGTTT
Statistics
Matches: 98, Mismatches: 7, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
31 27 0.28
32 3 0.03
33 2 0.02
34 24 0.24
35 11 0.11
36 31 0.32
ACGTcount: A:0.06, C:0.32, G:0.22, T:0.40
Consensus pattern (36 bp):
CGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCT
Left flanking sequence: Indices 109529 -- 110028
GCAAGATGAAATCCTTTTGATGGGTGTGCGTTGTTCTTGCGTAAGTTCCAATAACGGAATTCACG
TAAGATAAGAAGTCATCGTTGCTATCCTGCTTTCAATAGTTAGGGATGCTTTCCGCTGCTGTCGA
GCTATCTCTATTTTCAGCCCCGACAACTTATGAGTGAGGCTTTCGGGTCTAAGTCAGAAAGAGGG
TTAGACGAAGGTAAGAACTTGGTTGCCACCTTTGCTCATCAACGTGAATGCCGAGCTTCTGTTTC
CGACTTATTCAATCCAGCTCTGGAGTCTCCGCCGGATTTTCGGTAATCATATGGTGCTGGTTCAT
CGATTCCTGTCATCCTGTCATGAAGGAATGAATTCGATTCTTATTAGTAGGGGTGGAGGAAAGAA
GCAAGGCTTTCAAAGAGGCATGAAGTTCTCGACTGAACAAGCAACGGCTGACGACGAGTAGGGCG
CAAACGCGTCTCAAGCCCTCGAGCTGACGCTCGAGCCGCTTCGCA
Right flanking sequence: Indices 110180 -- 110679
ACATCCGTTTTCTTGCTGGGAGAGGAAGTTGGCATCTCCACTCAATGAACTTGGAACGACAATGA
GGACGAAGATTTCCCTAGCCAAGGGGACTGATGAGAAGCCCCAGCCAGTTCGCTACTATATTACA
TATAGCAAATACACCAGGCATTGCCGGACACTTTCTCTTTAACCGAAATGGCTCTTTGGGTTACT
CGATTGCGAAAACATAGGTTAGAATCCGAATAAGGGCAAAGGTCCCATCCATCACTGCCCATCTG
GACTAGCCTCGCTGTCAAAGAGCCATAGCAGGATAGGGAAAAACAGAAGTAATCTACACATTATT
TGCCTACTCGCTTATTCCTCTGCTCGGTAGTGCCGTTGAAATTTATTGCATTTCACCCTTTTTTC
TAGGATCAGTTAGTTATTCTGCCGTCCTGAATGCAATAGCTTCCTCGGGTTTAGTTTTCAGTTTG
CTACCCCCGCTTTATCAGTAATAAGGAAAGCAGCACATTCAAGCA
Found at i:110137 original size:17 final size:17
Alignment explanation
Indices: 110115--110165 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
110105 TTAGCTTCGC
110115 GCATCCGTTTTCTTGCT
1 GCATCCGTTTTCTTGCT
* *
110132 GCATCCGTTTACTTCCT
1 GCATCCGTTTTCTTGCT
110149 GCATCCGTTTTCTTGCT
1 GCATCCGTTTTCTTGCT
110166 CGTTGTGCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.08, C:0.31, G:0.16, T:0.45
Consensus pattern (17 bp):
GCATCCGTTTTCTTGCT
Left flanking sequence: Indices 109615 -- 110114
CTATCCTGCTTTCAATAGTTAGGGATGCTTTCCGCTGCTGTCGAGCTATCTCTATTTTCAGCCCC
GACAACTTATGAGTGAGGCTTTCGGGTCTAAGTCAGAAAGAGGGTTAGACGAAGGTAAGAACTTG
GTTGCCACCTTTGCTCATCAACGTGAATGCCGAGCTTCTGTTTCCGACTTATTCAATCCAGCTCT
GGAGTCTCCGCCGGATTTTCGGTAATCATATGGTGCTGGTTCATCGATTCCTGTCATCCTGTCAT
GAAGGAATGAATTCGATTCTTATTAGTAGGGGTGGAGGAAAGAAGCAAGGCTTTCAAAGAGGCAT
GAAGTTCTCGACTGAACAAGCAACGGCTGACGACGAGTAGGGCGCAAACGCGTCTCAAGCCCTCG
AGCTGACGCTCGAGCCGCTTCGCACGTTGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCTCGTTG
CGCTTCCGCGCATCCGTTTTCTTGCTCGTTGCGCCTTAGCTTCGC
Right flanking sequence: Indices 110166 -- 110665
CGTTGTGCGTTAGCACATCCGTTTTCTTGCTGGGAGAGGAAGTTGGCATCTCCACTCAATGAACT
TGGAACGACAATGAGGACGAAGATTTCCCTAGCCAAGGGGACTGATGAGAAGCCCCAGCCAGTTC
GCTACTATATTACATATAGCAAATACACCAGGCATTGCCGGACACTTTCTCTTTAACCGAAATGG
CTCTTTGGGTTACTCGATTGCGAAAACATAGGTTAGAATCCGAATAAGGGCAAAGGTCCCATCCA
TCACTGCCCATCTGGACTAGCCTCGCTGTCAAAGAGCCATAGCAGGATAGGGAAAAACAGAAGTA
ATCTACACATTATTTGCCTACTCGCTTATTCCTCTGCTCGGTAGTGCCGTTGAAATTTATTGCAT
TTCACCCTTTTTTCTAGGATCAGTTAGTTATTCTGCCGTCCTGAATGCAATAGCTTCCTCGGGTT
TAGTTTTCAGTTTGCTACCCCCGCTTTATCAGTAATAAGGAAAGC
Found at i:120054 original size:25 final size:25
Alignment explanation
Indices: 120025--120103 Score: 131
Period size: 25 Copynumber: 3.2 Consensus size: 25
120015 AAAGCCGTTG
***
120025 TGCTTCCGACGCACATCCGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
120050 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
120075 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
120100 TGCT
1 TGCT
120104 CGTTGCGCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 51 1.00
ACGTcount: A:0.14, C:0.30, G:0.22, T:0.34
Consensus pattern (25 bp):
TGCTTCCGACGCACAGGAGTTTTCT
Left flanking sequence: Indices 119525 -- 120024
AGAGTGAGCCGAAGCTTCCCGGGAGAATGCTGTGAATATAACAAGGTGAAGCAGGACTTCCGCAG
ATTCGTTGAGGATCTTTGGTCAGAGCCTGATATCATGGCTAGCCTTCCTCCGTCGACTAGCGTAT
TCCACTAGTTCAGGGGGAGGAAAGAAAGAGGAGAATTCTTGAAAGAGAGTCAAATGACCTATCCT
TGAAAGCATGAAATTAAGTCAGTCCTTTCGGGTGGCAGCCCAGTCCTTTCATTCCTTCCTGAGAA
TGGATCCCCAATAGCTCGCAGATAAGGTTTGAAAATGCTCGAGCGATAGCGAGAGGTTACGCAGT
ATCTCGACCGAACAAGCAACGGACTGAGCGCACTAGCGCCATTAGCCCTCGAGCTGACGCTCGAG
CGACGCTAACGTCTTAAGGCCTCTCGCTTTGCTCGAGCAAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 120104 -- 120603
CGTTGCGCCTTAGCTATTGAGTTTGATTGCTGGGAGAGGAGTGTTATTGATTGCGTCACGGTATT
CGTTTTCTTGCTGGGGGAGGTACAAAGTGACTCGACCGATAGGGAGAGGATTGAAGACGCTCTCC
CGATAGGGAGAGGATTGAAGACGCTCTCCCGATAGGGAGAGGATTGAAGACGCTCTCCCGATAGG
GAGAGGATTGAAGACGCTTTCGGAGATCGAGATTTTCTTTGTTTTTTATCGAAAACGAAGAAGGC
CGAGGATGGCCTACGGTGCGTGTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGGTATGATT
GCCGGGCCCTCTCCTCGTTCCGCCCGCTGGCCTATTGGGATAGCAGCCTTCGGGCTTTGCCTGCC
CTTTATATCTCGGCCCGGGAAAGCGCTGGCAACAAAAGAAAGGAAGGGGTCCATGTAGCTGCAGC
GTCCGCCCCCTTCTTAGTCAATGGGGCAGCAGGTTCGGCATCTAC
Found at i:120236 original size:29 final size:29
Alignment explanation
Indices: 120204--120316 Score: 226
Period size: 29 Copynumber: 3.9 Consensus size: 29
120194 AGTGACTCGA
120204 CCGATAGGGAGAGGATTGAAGACGCTCTC
1 CCGATAGGGAGAGGATTGAAGACGCTCTC
120233 CCGATAGGGAGAGGATTGAAGACGCTCTC
1 CCGATAGGGAGAGGATTGAAGACGCTCTC
120262 CCGATAGGGAGAGGATTGAAGACGCTCTC
1 CCGATAGGGAGAGGATTGAAGACGCTCTC
120291 CCGATAGGGAGAGGATTGAAGACGCT
1 CCGATAGGGAGAGGATTGAAGACGCT
120317 TTCGGAGATC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 84 1.00
ACGTcount: A:0.28, C:0.19, G:0.35, T:0.17
Consensus pattern (29 bp):
CCGATAGGGAGAGGATTGAAGACGCTCTC
Left flanking sequence: Indices 119704 -- 120203
TCAAATGACCTATCCTTGAAAGCATGAAATTAAGTCAGTCCTTTCGGGTGGCAGCCCAGTCCTTT
CATTCCTTCCTGAGAATGGATCCCCAATAGCTCGCAGATAAGGTTTGAAAATGCTCGAGCGATAG
CGAGAGGTTACGCAGTATCTCGACCGAACAAGCAACGGACTGAGCGCACTAGCGCCATTAGCCCT
CGAGCTGACGCTCGAGCGACGCTAACGTCTTAAGGCCTCTCGCTTTGCTCGAGCAAACAAGCAAG
GGCCCGAGCGCAAACGCGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTGTGCT
TCCGACGCACATCCGTTTTCTTGCTTCCGACGCACAGGAGTTTTCTTGCTTCCGACGCACAGGAG
TTTTCTTGCTCGTTGCGCCTTAGCTATTGAGTTTGATTGCTGGGAGAGGAGTGTTATTGATTGCG
TCACGGTATTCGTTTTCTTGCTGGGGGAGGTACAAAGTGACTCGA
Right flanking sequence: Indices 120317 -- 120816
TTCGGAGATCGAGATTTTCTTTGTTTTTTATCGAAAACGAAGAAGGCCGAGGATGGCCTACGGTG
CGTGTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGGTATGATTGCCGGGCCCTCTCCTCGT
TCCGCCCGCTGGCCTATTGGGATAGCAGCCTTCGGGCTTTGCCTGCCCTTTATATCTCGGCCCGG
GAAAGCGCTGGCAACAAAAGAAAGGAAGGGGTCCATGTAGCTGCAGCGTCCGCCCCCTTCTTAGT
CAATGGGGCAGCAGGTTCGGCATCTACTAAAAAAGAGAGAATCCACTTGAGATAACCACGCCTCT
GCTAGGCAGCGTGTGGAATGGCCAAGAGCGGACCTTTTTGGATATATAATCCAAGTCGAGAGTGG
AGTTACGGGAACAGCCGTCTGATGGAAAACTACTTTCACGTTCGGTTCAGAGAGCACTTTTTTCG
TTGAGAATTCTTCGTTCCCTTTCGTGTGAATTCCCCAGCGGCGAA
Found at i:135779 original size:25 final size:25
Alignment explanation
Indices: 135745--135798 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
135735 AGGCGCAACG
* *
135745 AGCAAGAAAACTCCTGTGCGTCGGA
1 AGCAAGAAAACGCATGTGCGTCGGA
*
135770 AGCAAGAAAACGGATGTGCGTCGGA
1 AGCAAGAAAACGCATGTGCGTCGGA
135795 AGCA
1 AGCA
135799 CAACGGCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.20, G:0.31, T:0.13
Consensus pattern (25 bp):
AGCAAGAAAACGCATGTGCGTCGGA
Left flanking sequence: Indices 135245 -- 135744
GATGTTCGCCTTTTGTAACAAGTAGACCCACGATACGGACTAATAGATGTTCCTACTCTTATCCG
AAAGTCAGATCTATTCCATTTTGGTCAGTCCCCCACGGCACGGCTTCCCGCTTTTCATGAATGTG
TCTCCCCCTCTGCTTATGTGAGTTTGACCCGCCTTTGACTCTGCTTGCTTCTTACTCCCTATGAG
CCGTTTTACGACCTTACTTTTTCGGAGGGTCGGCGGGACATGGGAGCCTCAGCTCATGCATCGGT
TTACCGAAATAACCTCCGCTATCCCACTTCCTTCTATTCAAAAAGGCGAGCAGCCCTTAAACAAA
AAGGCCAAATGAGGGCTCTTCTTTATATATTACATAAGCCCTAAAGTAGGTAGCCCCGAAAGCCG
AACTCAGCAACTTGTTAGGAGTAGGTTTTGGCTTGCCCCTTTCTATGTTATTAGTAAAGCGCCGT
TTCGCCCCTCTCCCAGCAATCAAACTCAATAGCTAAGGCGCAACG
Right flanking sequence: Indices 135799 -- 136298
CAACGGCTTTCGCGCTAGCTCAGGCCGTTGCTTGTTGCTTTCGCGCGTTTGCTCGAGCGTCAGCT
CGAGGGCTTGAGACGCGTTTGCGCTCGGGCCCTTGCTTGTTCGCACCGGCTTTCGCGCTGCGAGA
GGAGTGAAGATTGCTGGCACGAACGGTAGAAAGACAGTCTTCTCCTTCTTGCCTTAGGAAGATAG
GAAGACTGTTAGCTGTTAGTAAGTCAGTAGCTAGTCATTCAGTAGTAAGTCAGTGGCGCCTTTCG
GTGAACTCAATTTCTTTTTTAGTTTGCTTTGCACGAGCACTGTGAGATTCCCTTGCTTCTTGGCT
TTTTAGCGTTAGCTATTCCGTTTTCTTGCTGGGATAGGTACAAGAACCTCAGCCCTACCTTATTT
GATTTGACCGAAGAAGCTTAATATCATATGGAATAGGATTAGGATTAACCGCACCTATTTGATAG
TTTTGGTATTGAAGACGCTTAGTGCTTGGGCTAAGGTTTGAAGAG
Found at i:140721 original size:20 final size:20
Alignment explanation
Indices: 140696--140755 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
140686 TATCATATCC
140696 ATCTATTTCTATTGAGTATG
1 ATCTATTTCTATTGAGTATG
140716 ATCTATTTCTATTGAGTATG
1 ATCTATTTCTATTGAGTATG
*
140736 GTCTATTTCTATTGAGTATG
1 ATCTATTTCTATTGAGTATG
140756 TATGTCTACT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (20 bp):
ATCTATTTCTATTGAGTATG
Left flanking sequence: Indices 140196 -- 140695
CTTGGTCATTGAGATTCATGGGCAATACAGACGAATATTATAGGAATTATATTACCTCCCCCTTT
CTCCTTTCAAACAAATCAAAATGATTGAAGTTTTTCTATTTGGAATCGTGTTAGGTCTAATTCCT
ATTACTTTGGCTGGATTATTCGTAACTGCATATTTACAATACCGACGTGGTGATCAGTTGGACCT
TTGATTAATTAACATTTTTTTATTGACCTCCTATTTTCTTTGTTTTAATCCTAATCCACAGGAGG
TAAAATTAAGACTTTAGACTGCTGTTCCATTATTTCAGTGTCATTCTCGATCTAACAAGAATGGA
ATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGCGTTCTACCGAACTGA
ACTAAGAGCGCTTTATTTTCATAAATCATTTTATGTGACCCCGCATGCATATACTATCATAATCT
ATATATATAGAACTCTCATCATATATATATATTGATATCATATCC
Right flanking sequence: Indices 140756 -- 141255
TATGTCTACTTTTAATCGGTATCCCTTGTTACTGCTCATAAGATAAGTAATAGTTAGGGATAGGG
ATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCGCTACAT
CCCTTTCAATTGGTCTACGGGTGGTCATTGTAGAGAATCCCTGCCCCGTTTTCAAATTTGTTATT
TCCTACATCGATATAAAATTGATCTTGCCATTTCTTCTTTTTGATCTTTATTGATTTATATACTA
ATCATCATCCCGCCGCTCCTACCAACGCTTACTTACTTATAAAAAAGGTTCTAAATAATCAGCCC
TTTGAATAAGCGAGGCTTCCCCGATAGAAATAGTTGCATGCGAGAGAGATCCCAATTCCGTGTAT
CCGGTTAAGCAAGCCCTGCTGCCAGCTTCCACCCAGACAAAAAACAAACGTGAGCGCCTGGCGCG
AAAGGTTGCTTTGCTTTACTAAATAATATAAGGCGTGTTAACGCT
Found at i:159889 original size:6 final size:6
Alignment explanation
Indices: 159870--159949 Score: 61
Period size: 6 Copynumber: 13.3 Consensus size: 6
159860 CGTTTTCGCG
* * * * * *
159870 AAAGAA AAAGAA AAATAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
* * * * *
159918 AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AA
159950 GGGATATCAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 71 1.00
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (6 bp):
AAAGAA
Left flanking sequence: Indices 159370 -- 159869
ATCTAATTCCAGTTTATTCTTATGTAGTGGAAAGGCCTTACAATCTTCAGTTTTACGCTTAAGGG
AAGAAATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACA
AGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAATAAGGTGGAATCCCTGGATCTAGTGGCCGG
TGAATCACTGATCAAAAAGAAGATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCAC
TGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGT
GAACCGCTTCTTCTTCTTCCACGAAGATTTAGACAAAAGCGAGCTTGGATGGAACTGAACAAGAT
TTGGCGAACGAATACAAAGGTAAAAGGCTATTTTTTAAAGAAAAGAAAAGGAGGCTATCAAGTAG
TCATCGCGGGTTTCATTACTTTTATTCCATTCCGCCGTTTTCGCG
Right flanking sequence: Indices 159950 -- 160449
GGGATATCATCATTCAACATTGAGAGCATTAACATTAACAAAAAAAGGACGAATATTGTGGTGTT
CTAACAGCGGCAGATCAAACAAGAACTTGATGAGCGAAATCTGCTGACAAAAAAAAAGAGCAGTT
TTTTCAATTCCGAAGCGAAGCCTAGCGTCTCCTGATAACACTCTATCACCTTAATCCATTCTTTT
GTTGAGGGTCTGGCACTTATTACAGGCCGCTCTGTCATTGTCTGATTTTTGGTTGTCTGATCACA
GTCGAAATTGAAAATGTATCTACTTATCGTAATTTTGCCCCTTATCGGTAGTTCCGTAGCAGGTT
TTTTCGGACGTTTTCTAGGATCAGAAGGAAGCGCTATAATGACCACTACGTGCGTTTCATTCTCT
TCGATCTTATCTTTGATTGCTTTTTATGAAGTCGCACCGGGAGCTAGTGCTTGCTATCTAAGAAT
TGCTCCATGGATCTCATCGGAAATGTTTGATGCTTCTTGGGGCTT
Found at i:159950 original size:6 final size:6
Alignment explanation
Indices: 159886--159951 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
159876 AAAGAAAAAT
159886 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG
159934 AAAAGG AAAAGG AAAAGG
1 AAAAGG AAAAGG AAAAGG
159952 GATATCATCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (6 bp):
AAAAGG
Left flanking sequence: Indices 159386 -- 159885
TTCTTATGTAGTGGAAAGGCCTTACAATCTTCAGTTTTACGCTTAAGGGAAGAAATGTTCTTGGT
GGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAAGAGTGCCAATCAACC
GAGCCACCAGGTTTGAGAATAAGGTGGAATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAA
AAGAAGATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGC
AGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTC
TTCCACGAAGATTTAGACAAAAGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAACGAATACA
AAGGTAAAAGGCTATTTTTTAAAGAAAAGAAAAGGAGGCTATCAAGTAGTCATCGCGGGTTTCAT
TACTTTTATTCCATTCCGCCGTTTTCGCGAAAGAAAAAGAAAAAT
Right flanking sequence: Indices 159952 -- 160451
GATATCATCATTCAACATTGAGAGCATTAACATTAACAAAAAAAGGACGAATATTGTGGTGTTCT
AACAGCGGCAGATCAAACAAGAACTTGATGAGCGAAATCTGCTGACAAAAAAAAAGAGCAGTTTT
TTCAATTCCGAAGCGAAGCCTAGCGTCTCCTGATAACACTCTATCACCTTAATCCATTCTTTTGT
TGAGGGTCTGGCACTTATTACAGGCCGCTCTGTCATTGTCTGATTTTTGGTTGTCTGATCACAGT
CGAAATTGAAAATGTATCTACTTATCGTAATTTTGCCCCTTATCGGTAGTTCCGTAGCAGGTTTT
TTCGGACGTTTTCTAGGATCAGAAGGAAGCGCTATAATGACCACTACGTGCGTTTCATTCTCTTC
GATCTTATCTTTGATTGCTTTTTATGAAGTCGCACCGGGAGCTAGTGCTTGCTATCTAAGAATTG
CTCCATGGATCTCATCGGAAATGTTTGATGCTTCTTGGGGCTTCT
Found at i:183587 original size:18 final size:18
Alignment explanation
Indices: 183566--183608 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
183556 CAACCTTGTT
183566 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
183584 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
183602 GACTATG
1 GACTATG
183609 GCAGGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 183066 -- 183565
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 183609 -- 184108
GCAGGGCTTTAGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGA
AGATTTAAAAGGCGAGCACTGAAATGAGAAAGATCATTCGTGACGCTGAACGACACTAAAAAAAC
ACTAAAGCGCACAAACGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCA
TGTTCGCCTGCTGGGCCGAGTGTTCGCCCACTGAAGACTCTTCGCCTTTAGATAACAAAAAGTGT
CCGCCCGGGTCGCCAAACTACGACGAGAGTTTCGCCTTTGGAAGCGCCAGTCGCGTAGGGCGCCT
CGTGGTAAGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGA
GTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCACTCCAACAGACAGGCATGGTT
CTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGG
Found at i:185792 original size:31 final size:30
Alignment explanation
Indices: 185755--185817 Score: 117
Period size: 31 Copynumber: 2.1 Consensus size: 30
185745 AGCAACTAAC
185755 GCGCAACGAGCAAGAAAACGGATGCGCGGAA
1 GCGCAACGAGCAAGAAAACGGATGCGC-GAA
185786 GCGCAACGAGCAAGAAAACGGATGCGCGAA
1 GCGCAACGAGCAAGAAAACGGATGCGCGAA
185816 GC
1 GC
185818 TAAGGCGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 5 0.16
31 27 0.84
ACGTcount: A:0.38, C:0.24, G:0.35, T:0.03
Consensus pattern (30 bp):
GCGCAACGAGCAAGAAAACGGATGCGCGAA
Left flanking sequence: Indices 185255 -- 185754
TGCGCCCGCTCCTTGTATCAAGGGCTAGGCTTGCTGGTTTTTCCATCATCCAATCCACAACAAAT
CGAATGAAACCTGGCGAAAAAGAAGTGAACACTTTGCTGCTGAGGAACGTTCACGTCAGGGCATA
TAGATTAGCGGGAGATGAAAACGAAGCTTCGTGTTTGTTTTTCTTCAAACCCCCAATCCGCTCTC
GCTCGCCGCTACTAACGGGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAGTTC
GCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGG
AGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTC
AATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGTACCTTAACCTTAGTACACTTCACA
CCAACCCAATAAAAAGTCAAAAAAGAAAAACTACAAGCAACTAAC
Right flanking sequence: Indices 185818 -- 186317
TAAGGCGCAACGGCTTTCGCTAACGCGCGCTCGGGCCCTTGCTTGTTCGAAAGCTCCGGGCCCTT
GCTTGTTCGAGCAGACGAAGGTTTAGTGATCACTTACGCAATTCGACTTATGCTCTTTTGCGAGA
GTTATGATGAGATCACTCTTTCTTTCGACAAGTGAATGCACGATCAGGTTAGACTTAATTGACTG
AAAGCTGTCTAAGGTAACTTGTACCTCTCCCAGCAATCAAACGGATGCGCGGAAGCGCAACGAGC
AAGAAAACTCCTGTGCGTCGGAAGCAAGAAAACTCCTGTGCGTCTAGCGCGAAAGCCGTTGCTTG
TTGGCTTGAGACGCGTTTGCGCTCGGGCCGTTGCTTGTTTGGTTGACTTACTCCGTACCTAGAAA
CATAGTTGAGACTGGTCGATCTTTGTCAATCCGGCTTTCACTCTCAAGCAACCTTTGCTCCATTC
GTGGAAAGAAACCTAAGACAAGAGGGTTGGGTCAGCAGATTGGGT
Found at i:187868 original size:25 final size:25
Alignment explanation
Indices: 187839--187892 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
187829 AAAGCCGTTG
* *
187839 TGCTTCCGACGCACATCCGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
*
187864 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
187889 TGCT
1 TGCT
187893 CGTTGCGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.31, G:0.20, T:0.35
Consensus pattern (25 bp):
TGCTTCCGACGCACAGCAGTTTTCT
Left flanking sequence: Indices 187339 -- 187838
TTCCATAGGGGACCCTTACACCCGGGGGAAGACTGTACGCGAACGACCCTCATCATCTCCATCTG
TCCAAACTATGGTGTCACCGGACCTCATACAGCAACTTCTCCCTCACCTTGTCCAAGCTTGACCT
TCGACCTTAAGCCGAAGAGAGCATAAGAGGGACGCTTTGCGAGCCGAGCAACTCGAGACGAGGCC
CTTTTTCGTAGCCGATCATCTCGCTCTTCCTCTCCCAACCAAGCCCAATCGACACGCCTCCAAAG
AGGTGGAGTGATGACCTTTCCAGCTGTTCCGCCCTTGCTTTTTTAGGTTTAAGCTATGAAGCTGA
CCTTCTTCTTCAACATAAACATAAGAAGAGATTTTCGGTTTCACGCTGGTTCTATCCCGGCCAAG
CAATAGGTGGGAATAGTGAAAGAAAGAGAAGGGGAAGGGAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 187893 -- 188392
CGTTGCGCTTCCGCGCATCCGTTTGATTGCTGGGAGAGGAGCGGTAGGAGCAGCTCGACTGAAAG
GAGAGGACCGAAGATGCCGGAAAAGTCATCAAGTAAAGTGCTAACGTGCAGCTCCCATTCCGTAA
CCAAGAGAAACCCTAAGAGAATACCATGCTACCAGTCCTAGCTGGCACCGAAGCCAAGGGAAAGC
ATTTGAACATTCTGAATGAAAGAAGAGCTTATTCGTATTCAATGCTAGCCGACCCAGCCTCCCAG
ATCCGCATCAGCGAGTGGTGTGACGACGACCAAGCCGAAAGACAGATCTCATCACAGCACTTGTA
GTAACCCTCCTTTTCCCACCTCTTCGCCTCGAGTCTGATAGTACTAAAAGGGTTTGCTGCTCTTC
TTCTTCTTTCTGAAAGATAGCTATTCTTCGCCTCTCGAAAGAGGCTACGTACCAGTTAAACGATA
AGCGCTACGCTTTTCCCTAGGGCTTTCACTTCTTGTCTACAGCTG
Found at i:191282 original size:25 final size:25
Alignment explanation
Indices: 191253--191306 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
191243 AAAGCCGTTG
* *
191253 TGCTTCCGACGCACATCCGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
*
191278 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
191303 TGCT
1 TGCT
191307 CGTTGCGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.31, G:0.20, T:0.35
Consensus pattern (25 bp):
TGCTTCCGACGCACAGCAGTTTTCT
Left flanking sequence: Indices 190753 -- 191252
TAGAGAGAAAGGCGGAGGAAAGAAGACGAGAGAGCAAGCCTCAGGAAAGTCTTGGTTGGCTAAGG
AGAAAACGTGTTGGCATACCATGTCTGGACGTGATGAAAGAGTCCATAGAATGCTATGCCTTGAT
ATCAAAGCCAACTAGCAGAGCCGATGCGAGGATCGGTGGGATGCCGCAGCTTTAAGAGATAGGGG
CGGAGTCTCAACTACCACACAACTACTATATCACTAGCACTCCACGAGTGGATTAGTTTACTAAC
TAGACTTAGACTCTCTTTGTTGATATCAATCACTTTATATATATATAATCCAGTAGCAAAAAGAA
TAAGAGAAGCAAGGCAAGGTCCACAGAAGGAACGAAGTGCTCTCCCGAACAAGCAACGGACTGAG
CGCAAACGCGTCTCAAGCCCTCGAGCTGACGCTCGAGCAAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 191307 -- 191806
CGTTGCGCTTCCGCGCATCCGTTTGATTGCTGGGAGAGGAGGGAAGACGCTCGACTGGTTGGAGA
GGATAGGAAGTAGTACACTACGCCCGGTTCACCAGGTTCTACCACTGTTTGGAACAATCTTAGTC
AAAATCAGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAA
CGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCC
AGGAGGTGGGAACAGTTGAAAACAAAGTGGCGAACGGGTGCGTAATGCGTGGGAATCTGCCGAAC
AGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTA
GTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACA
CTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGG
Found at i:191864 original size:12 final size:12
Alignment explanation
Indices: 191847--191871 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
191837 CCAGCAATAT
191847 CGCGTGAGTGAA
1 CGCGTGAGTGAA
191859 CGCGTGAGTGAA
1 CGCGTGAGTGAA
191871 C
1 C
191872 AGCAATATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.40, T:0.16
Consensus pattern (12 bp):
CGCGTGAGTGAA
Left flanking sequence: Indices 191347 -- 191846
GGGAAGACGCTCGACTGGTTGGAGAGGATAGGAAGTAGTACACTACGCCCGGTTCACCAGGTTCT
ACCACTGTTTGGAACAATCTTAGTCAAAATCAGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCT
ATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCC
TAGCTAAAGGTAGCTTGTCTCGCCCAGGAGGTGGGAACAGTTGAAAACAAAGTGGCGAACGGGTG
CGTAATGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTT
TGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGC
TGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGC
AGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATAT
Right flanking sequence: Indices 191872 -- 192371
AGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATC
ATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGG
GCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAA
AGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGA
ATTTCGTGTGGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTC
TGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGT
CCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGTGGATCAGGGGCCCAGCTAACGCGTGA
AACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGG
Found at i:193640 original size:25 final size:25
Alignment explanation
Indices: 193606--193659 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
193596 GGGCGCAACG
193606 AGCAAGAAAACGGATGTGCGTCGGA
1 AGCAAGAAAACGGATGTGCGTCGGA
193631 AGCAAGAAAACGGATGTGCGTCGGA
1 AGCAAGAAAACGGATGTGCGTCGGA
193656 AGCA
1 AGCA
193660 CAACGGCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.35, T:0.11
Consensus pattern (25 bp):
AGCAAGAAAACGGATGTGCGTCGGA
Left flanking sequence: Indices 193106 -- 193605
CAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGG
GAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCC
CTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACC
CATGACTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGT
GGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAAT
CTTTCGCGATGGAAATGCCCTCTTCCCCCAACCTACGGGGCTAGCTTGCTGGAATGCGGGCGGGC
TTTGGGTCCAAAGGACACCGGGGGCGAGTCAAAAAAGAAAATCGTTCCCTCCATCCTCTCCCAGC
AAGAAAACGGATGCAGCAATCAAACTCAATAGCTAGGGCGCAACG
Right flanking sequence: Indices 193660 -- 194159
CAACGGCTTTCGCGCTAGCTCAGGCCGTTGCTTGTTGCTTTCGCGCGTTTGCGCTCGGGCCCTTG
CTTGTTCGTTAGCGCAACGTGCTCCGCTGCTCGAGCAAAGCGAGAGGCCTTAAGACGTTAGCGTC
GCTCGAGCGTCAGCTCGAGGGCTAATGGCGCTAGCTCAGTCCGTTGCTTGTTTGCAACGGCTTTC
GCGCTGCCCCTATCCTGCCGTTGCTTGTTCCTTACTCTAACAAGTAAGCAAGTAATACCTTCTTG
TTCATCAATCGGAAATCAAGACAAACCGCGGGCACTACGGTGAGACGTGAAAACACCCGATCCCA
TTCCGACCTCGATATGTGGAATCGTCTTGCGCCATATGTACTGAAATTGTTCGGGAGACATGGTC
CAAGCCCGGTTTAAAACTTTAAAAACAATGGCATCGTCTAAGTGCTCTCACACTTAGATTTAGAT
GGTGATAAGGTTTTCCACCCTTCTGCGTAAGGATTGCCTGTCAGT
Found at i:225165 original size:20 final size:20
Alignment explanation
Indices: 225140--225178 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
225130 TACTCGACCA
*
225140 AACAAGCAAGGGACTGAGCC
1 AACAAGCAACGGACTGAGCC
225160 AACAAGCAACGGACTGAGC
1 AACAAGCAACGGACTGAGC
225179 TAGCGCGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.26, G:0.28, T:0.05
Consensus pattern (20 bp):
AACAAGCAACGGACTGAGCC
Left flanking sequence: Indices 224640 -- 225139
GGCTATTCTTCCCATTTTAAAAGAGGAGTTCCAAGATACCACCGAACCACTATTAGTAGCCCTTT
CCGACAAGCCAAGGAAAGAAAAAGAAGGCAAGGTGCCGGCTAGAGAACACTATAATAAAACGAAT
CTGTCAACTGCTGGACGAGCTTTTTCCGCAATTTGGGCTGACCCCACGAAGCGCCTCCTTTCCGA
CGATCATTCGGAACTTGCTTAACGAGGCGGAGGCACCTGAGCGGACTTGACAGAGATCTACAAAA
GCTTAGCCGAAAACGGAATACAAAGCCCGTTTTTCGACGAAGTAGTGAGGGCTGTGCTTACCATA
ATTGGGGATGGAGGCAAATCTGTTAGCGCGGTTGACGGGCAACTAGGATATTTCATTTTCGGACT
TGTTCATGCGTCTGTCGCCGTTGCAGCTAAAATAACGGAGGATGGAGGAGGGGACATCAAATGGA
TTAGAGTTTTCACAGAACTGGAAGAGATACGTAGTTACTCGACCA
Right flanking sequence: Indices 225179 -- 225678
TAGCGCGAAAGAAGAAAGCAAGGCGCACTCAATCAAAGCAGCCTTTAACAAAACAACCTGAAAGC
GGGAACTCCCATCATCAAGGGATTTGGCTCATTCAATGCCAGCAAGAAAGGCAAACAAGTGGCAT
ATTCAAAACAGACAACCGGTAGCTAGCAGTTTCAGTTTAATCCGCCTACCATGTCTCCTCTGTAA
GGTCTCTCTAGACCCTCAGTCAAACCATCGTCCTCTGTAAAGTCCAATGTTTCATATATCTTCAT
CCTCACTTGCACCTCCTTGTCAGGCCTAGCTAGGCAAACCGGTGAACCTTCTAAGTAAGGGCGAG
GGTGTACGTATCCCAGGTGGAAAAAATCCCATTTGGATCAAAACTAGGGGGAATTGATCTAGGCT
AATCAGTGGCAAATAGAAAGTTAGGTTCAACCCTTCATCCTAGTGATGACACTAAAGTTCTTGTG
ATGCCCCTATTCTCTATCCTTATACAATCTTTCACTGAATTACAT
Found at i:267084 original size:25 final size:25
Alignment explanation
Indices: 267050--267103 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
267040 GCAAGCAACG
267050 AGCAAGAAAACTCCTGTGCGTCGGA
1 AGCAAGAAAACTCCTGTGCGTCGGA
267075 AGCAAGAAAACTCCTGTGCGTCGGA
1 AGCAAGAAAACTCCTGTGCGTCGGA
267100 AGCA
1 AGCA
267104 CAACGGCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (25 bp):
AGCAAGAAAACTCCTGTGCGTCGGA
Left flanking sequence: Indices 266550 -- 267049
TTCGGAAGAATCAACTGACTTCTCCCTTCTTCATTGATCTGGGGGAAAAGGAACCGTCTACCAGT
TGGGAAGCTAGACATCAAGTAAGTGGCTTGATGAGGATAACTAAGCTGACACGCCGGAGTTGGCT
GCTGGCACAACTGGGTGGTGCCTTACCGCACCGCAGGCGAACGCACGGTAGCGTTCGTGGTGGTG
CTTCAGGATTCCAATGTACTGCGTCCAAGATCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCC
ATTCTTGAGTGAGCTGGAGCGCAGCCATCTTATCCACTGAACTAGCTAGAAGCTATCGCTTCGGG
TCGAAGCACTAAAAGAAAAGGACCGGGAAACGCGGCGGCATAGGAACCACGGGACCCCCTACTAG
TAAAGGGAAAACGGAAGTGCGCTCCCGCGCACCAGCTGAAAAAGCCCTAAACCCAGCAATCTTCC
CTCCTCTCCCAGCAATCAAACGGATGCGCGGAAGCGCAAGCAACG
Right flanking sequence: Indices 267104 -- 267603
CAACGGCTTTCGCGCTAGCTCAGGCCGTTGCTTGTTGCTTTCGCGCGTTTGCGCTCGGGCCCTTG
CTTGTTTGCTCGAGCGTCAGCTCGAGGGCTTGAGACGCGTTTGCGCTCAGTCCGTTGCTTGTTCG
GGAGAGCTACATAGTAACCTCTCGCTTTGCTCGAGCTACTTCGTACCCTTGCTTGTTTAGTACAA
GCACTAAGTAAGCCCTAAAGGCCATAATAATAAGGTAAGCTTCATAGCTCCAACCGCGTTTTTTT
CCCTTTTTTTAGATTGGGTTGCTGGATACGGGATCCTCGTAGTAGGCTGGACCAACATCCAGCCG
AGAGAGGGCAGCCTTTAGAAGCGGGAAACCAAGAGAATGCTTCGCGTTTTCTTATCTTCTTCCGA
GTAGGAGTAGCACAAAAAGAGGGATTAGCATTATTGACCCAATGATAAACCACTAAAACCTGGGG
CTCCGCGCACTGGGAAAACGCTGACGCGACGGGAAACCGGCCACT
Found at i:348242 original size:21 final size:22
Alignment explanation
Indices: 348209--348251 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
348199 TACCGGAAGC
* *
348209 GAAGCTTCTGGCTCCC-CCTTT
1 GAAGCCTCCGGCTCCCTCCTTT
348230 GAAGCCTCCGGCTCCCTCCTTT
1 GAAGCCTCCGGCTCCCTCCTTT
348252 TCGTTCTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.09, C:0.42, G:0.19, T:0.30
Consensus pattern (22 bp):
GAAGCCTCCGGCTCCCTCCTTT
Left flanking sequence: Indices 347709 -- 348208
TCGTTACTTGAATATCGCCCTTTGAATAGTAATAAACATCAGCGTAGACTTTCGCTGCGTTGGCT
TCGTATGAAAAGGGCCTTGGGTCCGCAGGGAAAACTTGAACCTGATTGTTGTGCCATAGCATGAT
ACACTGGTTTAGGCTCGATGGCACACACATGTTCCTGTGTATTCATTCTCTTATCAAGAGTACGT
TGTACTGAACAAGCACTAAGTAAGAAACCCACCTTTTGACAACCTTACTAATAGAAAGGGGAAAG
ATGCGCTCAATCCGTTGCTTGTTGCTCCAACTTAGGACTAGGGGCTCGTCAGCCTTTTCTGCAGG
CTGCTATGCTAGTTGTAGCGCGCTAGCGCTTTACTAATAGAATATCAAGTCAAGGGGACTTTATC
ATGATCTTACGAATCTACAACTCTCTTTACTGAGCGAGACTCTACCCAGATCTAAAGAATTCGCC
AAAGAGCCTTCTTCTAACTAGGAGAGTAAGCAAGCTACCGGAAGC
Right flanking sequence: Indices 348252 -- 348751
TCGTTCTACTTAGGTGGAGCAATCCGAACTCTCGACAGAATATAAAAGAGGTTTGTTTTTATTCC
TATGTAGACACCTCAACGAACTCATGTGGACACTCCTCCGCCCGAGGACAATCTCTCAAAAATAC
ACATTAAGATGTTGACCCGTTTTTCTTTTCTTTGCTGATTCCTCAAAGATTAAATTTGCCATGTT
GCACTAAGTTACTTACGGATGTATGCATGCGGTCCGGGAACACTTTGGGGTGAACACCCATCCGA
ACAAGTAGGGTCAATAGTTCAGCATTTAGGCCGTAACATTTAGCAACAAAAAAATCTTTAACCCA
ACAAGTGCTCTCCGAACCAAGCTAGATAGTCTCCTATCACTAGGCTCACCAACCAACCTGGACTT
TGATTCTTTTTATTCCTACCGGATATCAAAACCATAAGGATTGTTTCCACCAGCCATGAGTTTCC
CATATGACATAAGCGCTCTTGGGTGGGCTGGGCCATTCCATCAAA
Found at i:349921 original size:25 final size:25
Alignment explanation
Indices: 349887--349940 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
349877 AAAGCCGTTG
349887 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
349912 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
349937 TGCT
1 TGCT
349941 CGTTGCTTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.15, C:0.28, G:0.24, T:0.33
Consensus pattern (25 bp):
TGCTTCCGACGCACAGGAGTTTTCT
Left flanking sequence: Indices 349387 -- 349886
TTCCCCACAAAAAATGAAAAAAAGAGAATAGAAACGATCCGGATTTGAGCTATTAACAAAAGAAA
AGAGATAAGCGAAGTGCTTCGTTTCAGATCAATTCTTCGCTGCAATCGCTTCGATCCACCCCCTC
GGTGAAAAACCGTAATACGCCCTGAAGAATTCCTACCAGCAGACTTCCCTGTACTCAAAGTGAAT
TGTCTAAGTGCTCTCCCCTCTTGGCTTTTTCTCATTGTCTATCTCGCGATTCCGTCCGAATTTTA
GCTCCTACTCCTGCTCCTCCTTTAGGATAGGATCGTCGTTGGTCCCTTCTTTCACTAATGATCTC
ACCATTTTCAGACAAAGATGCCCCTCGCGCAGGAGCGAAGATGCTCGAACAAGCAAGGGCCCGAG
CGCAAACGCGTCTCAAGCCCTCGAGCTGACGCTCGAGCAAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 349941 -- 350440
CGTTGCTTGCGCTTCCGCGCATCCGTTTGATTGCTGCGAGAGGAGTGAAGATTGCTGAGGTAGGG
TGCTGTAATAAAATTTTACATACAGCAACCACTGACTCATCCATGACCGGAGGCACGTCCATTCT
AAGAACTCGAAATTCTCGGAGTGAGTGAAATACTCACTACCGGGTACTTTCAAGTCCTTCATCCA
ATCTCTTAACCGGGTTATCATCAAGCCGATCAAGGAATTAGATATAGGCATGCCTCGTCCCAACC
ACCAAGTAACAGGCAGTCGGGAGTGGTCATACAACGCCAAAATTCTCCTCATTCGTAGAAGAGGG
CCACCTGGCAAGGGTATTAAAACCCACGCCACCTACCCGGTGTCGACAATCGATTGAATTTCAAT
TTCTTTTTTGATATATCGACATCAGTCCATAAGGGTGGTGAGCTACGAGGAGGGCCCGCATCGAG
ATAGGAGAGACATCAATTCTCCCGTCCCGAACACGGAATCTCTTC
Found at i:351927 original size:25 final size:25
Alignment explanation
Indices: 351898--351951 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
351888 AAAGCCGTTG
* *
351898 TGCTTCCGACGCACATCCGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
*
351923 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
351948 TGCT
1 TGCT
351952 GGGAGAGGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.31, G:0.20, T:0.35
Consensus pattern (25 bp):
TGCTTCCGACGCACAGCAGTTTTCT
Left flanking sequence: Indices 351398 -- 351897
GCCCCCGGACTATGCAAAAGAATCGAGGCCGGGGGGTCTCGCCCATAGTGGTTCCCCCCCGCCTT
TGGTGATTGACCAAACAAATAGGCCTAGATCTATGCCCCTTAATGAATCGAATGGTCCTTCGACC
CCTTCCATTTGATTCCGACGGCCGGCATAGATCTCATGAGACCCGCCCACTATTACTACGAAAAA
AGCCCTGCCTTTTTCCTTCGCTACTAGGAGAGTCAGCAACTTCTATTAGCGCCGGACCTTGAGTT
GAATTGATCGTGTCATGTGCAACGTCCATCAATGATGGTTCATTAATGTCCATTGATTTAGGCTC
CTTCTCCCTTCCCAACTACGAATAAGATCGAGAGGCTCGGAGATCTCGAACGAACAAGCAACGGC
TGACGACGAGTAGGGCGCACGTTAGCGAAAGCCGGTGCGAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 351952 -- 352451
GGGAGAGGGTACTTGTAGATCGACCGTTAGGGAGAGGAATGAAAGAGCTCGAGCGAAGCGAGAGG
AGCTAAAACAGCCCCCAAAAACCAAGAACGAAAACGGAAGCCTTTCGATTCACTCCCCACTCTCT
CAACAATAAAGCTCGCCCTCGAGCTTTATTGTTGAGGGCAGGTCGGCCGGGTCTTTCCCTGTTGT
TCTGTTCCCGCCACGAGAAAGACGCACAGAAGAGGTATGCCCAGCGCACGGAGGATCCTTTGAGA
GTGTCTGTTGTCTCGGTAGGGAACTGTACGATCTTTTCCCCTATTGTATTGAAAAAAATCAAAAA
AAAGAGGTCAGTGCTACGGCCCTCTATTGTTTGATCCAATATTGACCGGGGACGAGCCCCGACTT
CCATAGGTCCTTGGTTTGACCTCCCGTAGTGGTCCTTGCTTTTAATAAAGCGGAGCGGGGCCAAT
TTCTCGTACTTGCTCAGTGTACCCCCCTTTCGTCGAGTGCACCGC
Found at i:389307 original size:28 final size:28
Alignment explanation
Indices: 389267--389358 Score: 184
Period size: 28 Copynumber: 3.3 Consensus size: 28
389257 TTAGGAACGA
389267 AGTCACTCGACTGAAAGGAGAGGTACGG
1 AGTCACTCGACTGAAAGGAGAGGTACGG
389295 AGTCACTCGACTGAAAGGAGAGGTACGG
1 AGTCACTCGACTGAAAGGAGAGGTACGG
389323 AGTCACTCGACTGAAAGGAGAGGTACGG
1 AGTCACTCGACTGAAAGGAGAGGTACGG
389351 AGTCACTC
1 AGTCACTC
389359 ATATATCTAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.32, C:0.20, G:0.34, T:0.15
Consensus pattern (28 bp):
AGTCACTCGACTGAAAGGAGAGGTACGG
Left flanking sequence: Indices 388767 -- 389266
TATAATCATACTTAGGAAGGGATTCTCTCAAAAGAGAATGACTTCAGTCCGCCTTTCCTATGTCT
GTTTTCACGGTAACAAGAAAATATCATATAGTAACTCAATCTCCGATCGGGATTGTATTTTAGTA
TGATGAATGGTTAAACGTTGGTTTAAAAGGAAGATTCTAGCTGTCTGCCTGGATCTAGTCCATGA
AGAAAGACCTTTTACGTTTCGCTCTAGTGACTACGTTCCTTGTTCTATCAAACAAGCATCTTCCC
TTACAGGACAGCATATACATCATCCTCTCCAACCAGTCCTCATATAAGATATATACTTCGTGCGA
GCAGCTTAACGCTCCATTCACTGACTTACGTACCTCTCCCGTTGAAAGAGTAAACATTGAATCTA
TAAATTATGTTAGCACTAGAAGCTATCTTTCAAGATTAGCAATAGTAAAAGTGAGTAGCTCATAG
GTATGGGGTACGTACTAAGTTGCTAGATATAAGCTTTAGGAACGA
Right flanking sequence: Indices 389359 -- 389858
ATATATCTATATGAGGAACGGTCTTGAGTTCTTGCTTTTGTACGTAGTAACTCGCTTTCTGTAGT
TGCGAAAGGTACGTAGTTACTGTAGCGAAGCAACAGTAACGTTGTCGCTAGAGCGAAGCTTTTGG
CTGATCTACTTGTTAAGTTGTGGTTGTCATTCTTCTCGCTATCAAAGATAATCTTGGTAGCTAAT
TCTACTTTCGAGTGTTTTGCCTTGGAGGGATCCAGATTTGCTTGTACGGACCGTTGGTCGGATGG
CTGACAGCCTTCCTGATCTAGTGGAACGTTACATGCCTTAGCTCTCGACGATCCCCCTTAACCAG
CTCGCACAAAACAAGGAAGAAAAGCTCCACTGCTGGTGACAGCTACCGAGACATTAGACTCAGTA
ACAACAAAGAAATTGAACTGGACGATACCTTCCCCTTACAAGCGAAGATAGTCACCAAGACAGAC
GACACCGACAGCAAGTACAAGGCCTGCCCTAATATTCTACAGCAA
Found at i:437821 original size:61 final size:60
Alignment explanation
Indices: 437721--437837 Score: 166
Period size: 61 Copynumber: 1.9 Consensus size: 60
437711 CGTTAACGTC
437721 GCTCGAGCGTCAGCTCGAGGGCTAATGGCGCTAGCGCGCTCGGGCCCTTGCTTGTTGAGCT
1 GCTCGAGCGTCAGCTCGAGGGCT-ATGGCGCTAGCGCGCTCGGGCCCTTGCTTGTTGAGCT
**
437782 GCTCGAGCGTCAGCTCGAGGGCT-TGAGACGCGT-TTGCGCTCGGGCCCTTGCTTGTT
1 GCTCGAGCGTCAGCTCGAGGGCTATG-G-CGC-TAGCGCGCTCGGGCCCTTGCTTGTT
437838 CGACATAGAT
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
59 2 0.04
60 1 0.02
61 47 0.92
62 1 0.02
ACGTcount: A:0.10, C:0.29, G:0.36, T:0.25
Consensus pattern (60 bp):
GCTCGAGCGTCAGCTCGAGGGCTATGGCGCTAGCGCGCTCGGGCCCTTGCTTGTTGAGCT
Left flanking sequence: Indices 437221 -- 437720
CTCTAAGGCAAAGCCTAGAATGGCATAATTGTCCGATTCCATCTATCTTTCTTCTTTCCTATGGT
TCACTCCCCTCCACTCTATTGCTTTCTCAGGCTTACGTTCGAGCTACCGTACCCTCTCCTTGTCA
GTCGAGCTACATAGTAACCTGCTATAGACTATTTCCTTTCTGATGGAAGGCACGAAGGCAACTAA
GAAGAATATGTCTTTCACCTTTCCTCTCCTGCTTTAATTACTATATGCGAGTCAAACCTCTCCTT
GCCAGTCGAGAGCTATTGCGCCTGAAGTTCCAGGGAGATAGATAGTCTCGCTTAGCTGGTAAGAT
GGAAATCAATACTACTCCCTCTATTACGATAGCGCCCTAGTTCAGTGAAGTGAGTTCAGGGAGAA
GAGGGAAGATTCCTCACTTATAGGCTCTGACTTTGATGTAGAAATATCTATTCTTTATCCTTTGG
TACGGAGTCGCTCGAGCAAAGCGAGAGGCCTTAAACGTTAACGTC
Right flanking sequence: Indices 437838 -- 438337
CGACATAGATGAGATTGAGATTGGACTGTCTTTGGCCTAGAAGAATGGCACTTGACTTGCCTTTT
CTTGGTCGGTTCGAATCCGGCCCAGTCCTAGGGACGCACGTGACAGACGTTCTTGTCACTAAAAT
CTGGAGTGAAAGCCGGCTACCAGCACGGAGCAAAAGGATCTTGGTTGAAACTTTGGCACTGTGGA
CACCAGCTAACGTGGGTGACCCTTCAATAGATTTGCATGAAGGCTCCCCTTTACCTTTGGTAGGC
ATTCCCCCTATCTAACCGGACAGAGGTACTGGTGTGAAGAGGGCGTATACAAAAGTGGATTATGA
ATCGCTTTGCAACGTTGTTTCCCACTTTCATCTTTTAAAGAAAAGTTTTTCCCCGGTCAAAATTT
CGATCTTTTTATTGCTTGCTCTTGTGGTGATCTTGTGTTATTTTAGTTGTCTAGGGGATATTTAT
TTTTTTTGGATTTCTCGAAAGGCTGGCTTTCTCTCTCGGTGGGAG
Found at i:462204 original size:25 final size:25
Alignment explanation
Indices: 462175--462228 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
462165 AAAGCCGTTG
* *
462175 TGCTTCCGACGCACATCCGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
*
462200 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
462225 TGCT
1 TGCT
462229 CGTTGCGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.31, G:0.20, T:0.35
Consensus pattern (25 bp):
TGCTTCCGACGCACAGCAGTTTTCT
Left flanking sequence: Indices 461675 -- 462174
GGTGTTCATAATCTGGAGTAAAAGGATTCGAACCTTTGCATGCCGGTACCAAAAACCGATGCCTT
ACCACTTGGCTATACTCCATACGGCCTTGTTTTGGACGGTAGAACGAACGGGGAGAGGGGGAAGG
GAGAAGCAGGGCTCGAAGAACGAGCCGTGCAAGAACGCGGGGATATAGCAAGTAAGCAGCAAGTT
CTCCCTTTAGGACCGACTACAACAAGCTCGCGACTCTAATAGAAAAAAAAATGGTAAGCTCTCTG
CTCTATTTGCTTGCAATGCTATACCTATCAAAGTTGGCGAACGCTTCTGTAACCTTAGACTCGTT
ACGCTGTTCGACTGAACGACTTAATGTTTCAGGGGTGGCTCGAACGAACAAGCAAGGGCCCGAGC
GCGCTAGCGTCTCAAGCCCTCGAGCTGACGCTCGAGCAAACAAGCAAGGGCCCGAGCGCAAACGC
GCGAAAGCAACAAGCAACGGCCTGGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 462229 -- 462728
CGTTGCGCTTCCGCGCATCCGTTTGATTGCGTCACGCACATCCGTTTTCTTGCTGGGAGAGGAGG
GAAGATTGCTGAGTTAATTTCTCAAAGTCAAGTTTCTCGCTTCTTGCTTTAGAAAGATTGCAGGG
GCGCGTTAGCGCCCTTCCTGAAGCTGGCTCCGCCCTATCTATTCATCTCTTTTTTCAAATGGATA
TTTAGGGATCTATCTTGTTCATAGATCTTGAAACCAGATCAATATCCATTTCTCAATATATCTTT
ATATCGATAGATAGAAAGATATAGATCTCTATCTGGCCATATCTAAATATGGAAGAACCAACACT
GAAAGGGCGTAACCAACGGAAGGTTCTCACCCTGTCCCCGACATTGTTCTCCGACGATGCCCCCT
GGGCGAAAGGGGCCACCATTCTCTTTCTTTCTTCAATCGTTCCGATCAGGACAAGTGGGTTGGTT
GGTTTCGTCCTTCTATCTACGCAATTCTCTGTCTTCGTTCGTGAT
Found at i:468648 original size:30 final size:30
Alignment explanation
Indices: 468612--468682 Score: 142
Period size: 30 Copynumber: 2.4 Consensus size: 30
468602 AGAAGGAACG
468612 TAGTGGCTCGACAGTAAAGGAGAGGTGCGA
1 TAGTGGCTCGACAGTAAAGGAGAGGTGCGA
468642 TAGTGGCTCGACAGTAAAGGAGAGGTGCGA
1 TAGTGGCTCGACAGTAAAGGAGAGGTGCGA
468672 TAGTGGCTCGA
1 TAGTGGCTCGA
468683 GCTTTGCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.28, C:0.14, G:0.39, T:0.18
Consensus pattern (30 bp):
TAGTGGCTCGACAGTAAAGGAGAGGTGCGA
Left flanking sequence: Indices 468112 -- 468611
GCTAGCGTCTCAAGCCCTCTCGCTTTGCTCGAGCAGCAAGAAGCAAGGGCCCGGAGCTTTCGAAC
AAGCAAGGGCCCGAGCGCGCTAGCGTCTCAAGCCCTCGAGCTGACGCTCGAGCCGCTTCGCACGT
TGCGCCTTAGCTTCGCGCATCCGTTTTCTTGCTCGTTGCGCTTCCGCGCAGGAGTTTGATTGCTG
CACAGGACAGGAGCGAAATGGATAGAATTCATTAACGTAGCTATCATACGACGGGACTCAAGCTT
TAAGTGAGAGGGGTGCCCTTACGTTACGGCGTTTAGCAAATTCAAAGCAACCAGTTTTCGATATC
TCGGACTGATCCTTATATAGACGAACATATACGCTAGCCACGAGCTGTAGTAAGCAAGAGGTTGA
CCAGTGTGAAAAGTCAAACTTGATCCCATCCGATTAGGTGAAGCTCCCTTGTACAGAAGCTGGAA
CCTCGCCTTTCAGTCTCTAGTTAATAGAATCTCCTAGAAGGAACG
Right flanking sequence: Indices 468683 -- 469182
GCTTTGCTTTAGGTTACTATGTAGCTCTCCCTATCGGGAAGAGCGATAAAGAGAGGAAGAAACTT
TATCACCATCTCCTGCGCGCTCCTCTCCTTTCAGTCGAGTGGCTTTCGCACCTGCGCGTATTGTA
TTTATATCTTACCTGCGCGAGCCGTTCACTGACAATCCCAACTAGTCATGCCTCTTCCAGTGTCT
ATTGACTCAGGACTGCTTCCCCACTTTGACTTTACTGGCTATATCCTCTTTCTCTTTCTTCTCTT
TTGTCCAACTACTACTCCAACTCGAGCTCTTAGCCCAGCAAGGTTCAGACCGAACATCGCCGACC
CCAGAGGTCAACTCGTCTGGTTCGAAGCCGGAATAAATGTAAAGAACGAACGTTGTTGAAACTAG
AATATTGGAAGATCAATCGGCCAAAATAACCACGAGCTGCATTGACAAAATCTGTAACCTTCATT
AGCAGATTCATTTTCTGGGGTTCCCCTGATCAAAATAGAGATTAC
Found at i:481051 original size:10 final size:11
Alignment explanation
Indices: 481015--481056 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
481005 TATAAAAAAG
481015 GTATAGGTATA
1 GTATAGGTATA
* *
481026 CTATA-CTATA
1 GTATAGGTATA
481036 GTATA-GTATA
1 GTATAGGTATA
481046 GTATAGGTATA
1 GTATAGGTATA
481057 AAGAAAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (11 bp):
GTATAGGTATA
Left flanking sequence: Indices 480515 -- 481014
GGATGAGCTAGATCATACTTCCTCTCAGGGGGAATAAACCATTAAACTTGAATTTGAGAACCGCG
ATCTCCGGATACGGGAGCTAAAACATAGCTGCTCGTCCTGTTTTCAACAGGTGCTTCTCCGCCAC
CCGACCTTGGCCGACCAGGCCCCATACCACCCGCCGCAGGAGGTTTTTGATGACTACCTGGATGA
GCGGCGGGAAGCACTCGATAAGCTGGCAACGGAGCCGGTGGGACAAAGGCCAAGCGGGCAAGGGG
TGCCCGTGGAGGAACGAGACAGGCGCGAAATAGCCTTTTTGGAAAATCTGCTCTCAGATCTCCAA
AAAAGGGGTCCGGCCGCAATCCAACCCATTTTTGATCAATCCCCAACCATATCTGGAAACAACGA
TTAGTGGATATTTGTACAGTAGCAAAACACAACTAGTTAGTGGCATTCTCCTAAAATGGAAATGG
AAAAATTCTTAATTATATACTAGTTAGTATATTAGTATAAAAAAG
Right flanking sequence: Indices 481057 -- 481556
AAGAAAGAAAAAATGGAATTCTCTGTAAGAGCTGCGGAACTAGCAAGTCTATTAGAAAGTCGAAT
TAGCAACTTTGTCACTAGTTTTCAATTGGATGAGATCGGTCGAGTGGTGTCCGTTGGAGATGGTA
TTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTC
AAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTGGGAATTGTTGTCTTTGGTAGTGATACCGC
TATCAAAGAAGGGGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCAGGAAAGGCTA
TGCTAGGGCGTGTGGTCGACGCCTTGGGGGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCAC
GAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTGCACGAGCCTAT
GCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCG
Found at i:492057 original size:31 final size:31
Alignment explanation
Indices: 492019--492079 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
492009 TGTGCGTGAC
492019 GCAAGAAAACGGATGCGCGGAAGCGCAACGA
1 GCAAGAAAACGGATGCGCGGAAGCGCAACGA
492050 GCAAGAAAACGGATGCGCGGAAGCGCAACG
1 GCAAGAAAACGGATGCGCGGAAGCGCAACG
492080 GCTTTCGCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.23, G:0.36, T:0.03
Consensus pattern (31 bp):
GCAAGAAAACGGATGCGCGGAAGCGCAACGA
Left flanking sequence: Indices 491519 -- 492018
TCATCATGTGGCCGAGCGAAGCGCACCTGTGTGAAGCAGCCTAGCATCACTTTAGATAGGAGCAG
AATGGATTACTTACAACTGAAAGTAAGTTCTTCGGATCGATATATCGTACGACGTAATGGAGATC
TTGGTCTAGATCCGGTGGTTCGCAGAATTCGGGACCTAACGATGTTCGATTCGTCACATGAACGG
GAGCGGACGATTCCCTCGTCTCTCCCTTTTCGGGGAATGGCTGCAATCACAAGCAAGTGATTGAA
TGAGTGGGGGGCTCCGAAAGCACATGCGGGATAAGCAGGTGTTTCAGGAGACGGTCTAAAAAAGG
GTCCGGTCTAGAAAGAAAAGAGAACTCTCAACAAGCTGGAACTAATCAAGATCAATAGGAAGAGG
AGTTAGCTAGGAATTCATTTTTTGACAAAGTTCATGCCACGACGATCTATATGGAAGGGCAGTTT
TGTTGATGCATTCCTGCTCCCAGCAAGAAAAGGGATGTGCGTGAC
Right flanking sequence: Indices 492080 -- 492579
GCTTTCGCTCCCTAAGCTCGGGCCCTTGCTTGTTCGAAAGCTCCGGGCCCTTGCTTGCTTCTTGC
TGCTCGAGCAAAGCGAGAGGGCTTGAGACGCGTTTGCGCTCGGGCCCTTGCTTGTTTGCTCGAGC
GTCAGCTCGAGGGCTTGAGACGCGTTTGCGCCCTACTCGTCGTCAGCCGTTGCTTGTTCGGGAAA
AAAACCTGCCCCTCCAAGATCCCCGGTAAACTCGGGCTCGGGGGGCCTTTGCCTTCATTTCTGGA
AGAACACGAGGTCCTCTCTTCTCTTCATCAATAGAAAGGAACGCAAGAAAAAATGTTGTGAACTC
CCCCAAGAAAAAATAGCGGTAAGTGATGAGGGGGCGGCTTTTTTCTTGTGGTAGTAATTGCGAAC
TCATTCCATTTTTTGAGGATTCGTTCCCTGTTCCTGCGGCTGAGAAGCCTCAAGCTCCGCCCCCC
TTACTCTAACTCTATAAAAAAAGCCCTAAAGGCCATAATATAATA
Found at i:495012 original size:25 final size:25
Alignment explanation
Indices: 494978--495031 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
494968 AAAGCCGTTG
494978 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
495003 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGGAGTTTTCT
495028 TGCT
1 TGCT
495032 CGTTGCGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.15, C:0.28, G:0.24, T:0.33
Consensus pattern (25 bp):
TGCTTCCGACGCACAGGAGTTTTCT
Left flanking sequence: Indices 494478 -- 494977
TTTATAATAATAAGTCAAGTCAAGAATAATAATCGAACTGGAGGATTGAAGACGCCCCTGGCAAG
AGTAGGCAAACAAGCAAGGAGTTTACCCGGGAGGTTTTTATCCCTCAACTGAATTATCGTAGTGT
AGTTACAGTCAACACAGTAGCTGTAACGTGAACAGCGCTTTGTCCTTTTTTTTATATCGAAATAT
AGGCGGCAACTGCGAAAGGCTTTTTCCCGTGCTTTTCGTTGGTCAACAACCAACCACATCTAAAA
AAGAGACAGACTTTCTATGTATTATAGTCAAACCACTAACTAGTCCTACATCCTACAGGCTTTTC
GGAGTTCAGTCTGTAGGTCAGAATTTTTTCTCAATCAATAATGCCTCAAGCCGTTGCAACAAGCA
ACGGACTTAGCGCACGTTAGCGAAAGCCTATAGCTTTCGAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 495032 -- 495531
CGTTGCGCTTCCGCGCATCCGTTTGATTGCTCGTTAGGACTTTAGTTGCTGGGAGAGGTACGAAG
TGACTCGACCGATAGGGAGAGGAGTGAAACTCGACTGTAAGGAGAGGAGCGAAAAGCCAGGATGG
CTTGGTAAGCAAGCAACCTGTTATGTAGGCGCCAACTCCCAGTTCTTTCTCTTCTTTCTTTTTGA
TTTTGACTTGGTTGGCAGGGTCAGGGCCTTTCTAATTACCAGCCGCCGTACGCAGAATGGGTTGA
TAGTGAATGGTATCCGGACAGCTATACCATCCCCGACTTCTGCATGTACGCCGGAAAGGGGTGCC
TTACGGCCCGTTGTGGAAACTCGGCGACCAATCAATCAAGCCTTGCTTCTAAAGCAGTTTCCTCT
GTCTCTGAAAGAAAATGCGCTTGAATGGTATATGGCAATTCCTCCCCGCTCCGTGGCCGATTGGG
AGCTTACTTCTCAGTGAATGAATCAGTTAAAGGGGTTCGTCAATA
Found at i:502956 original size:25 final size:25
Alignment explanation
Indices: 502927--502980 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
502917 AAAGCCGTTG
* *
502927 TGCTTCCGACGCACATCCGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
*
502952 TGCTTCCGACGCACAGGAGTTTTCT
1 TGCTTCCGACGCACAGCAGTTTTCT
502977 TGCT
1 TGCT
502981 CGTTGCGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.31, G:0.20, T:0.35
Consensus pattern (25 bp):
TGCTTCCGACGCACAGCAGTTTTCT
Left flanking sequence: Indices 502427 -- 502926
GGATTGACCTTTTTAACGCATATTCAGTCGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGG
AGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTG
CTTTACCCAACTCCCTTTTTGATAACAAGGCAGAAACCCCCGACCCGACATTCATTAGTTTCGAA
TGAAGAGTGCTCTGCCCCAGCAAGCACCTACTCCTATAAAAATGAAAAGCGTGACTTTACTAAAC
AAGCAAGAAAAGCTCTTTACTAATAACATAGAAAGGTTTGAAGACGCTCGACCTAACAAGCAACG
GACTGAGCGCACTAGCGCCATTAGCCCTCGAGCTGACGCTCGAGCGACGCTAACGTCTTAAGGCC
TCTCGCTTTGCTCGAGCAGCGGAGCACGTTGCGCTAACGAACAAGCAAGGGCCCGAGCGCAAACG
CGCGAAAGCAACAAGCAACGGCCTGAGCTAGCGCGAAAGCCGTTG
Right flanking sequence: Indices 502981 -- 503480
CGTTGCGCTTCCGCGCATCCGTTTGATTGCGTCACGCACATCCGTTTTCTTGCTGGGAGAGGAGC
GGTAGGAGCAGCTCGACGTAAGGAGAGGGCTTGAACGCTTGTTGCTTTCTTCGCATGCTTGAGCG
CATTAATAGAATACATATATAAAAAGGCTTTACTTGAGTTTTCAATAAGGTGGGTTTCTTACTTA
GTGCTTGTGCTAAACAAGCAACAGCTTTCTAAAGCTCAATCCCTTGCTTTGTTCTATAGTAAGGG
GCCTTTTCAATAAGGCTCGCGTAGGGGCGCTCACGTTTTTTGGCTTACCAAAAATCTTAGATTTG
AAAGTTGGTAAAGACCCACCCCTTGTTTCAGTCAGAATGAGTCCCCGGGACCCCGGGACATTGGC
TTCCGCCAACAGTGGACTATTAAGGATCGCATCCCGCGCATATTCTACATTATAGCCTGCAACTG
ATTCAGCTTCCGCTTCTGGGAGATCAAACGGAGCTCGATTAGTTT
Found at i:521726 original size:15 final size:15
Alignment explanation
Indices: 521706--521735 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
521696 CCTTTACTAT
521706 ATATCGGTCTTCAGC
1 ATATCGGTCTTCAGC
*
521721 ATATCGGTTTTCAGC
1 ATATCGGTCTTCAGC
521736 TCTATATACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (15 bp):
ATATCGGTCTTCAGC
Left flanking sequence: Indices 521206 -- 521705
GCACCTATTCCCCCACTACAGTGAGCGTGGTATGTCGCTAGCATTTAATCAATTGAGAGTTGAAT
TCATCAAACAAGTTCCTATGGGCTTAGCAAGATAAATAAATATAAAAATCTTTGTTTTAATCGGG
GAATCCGTGGTTTAGTGGCTAGGGTGTCTACCTGTGCATCTTGGGGAGGTTGCTGCTGGGAAAGA
GAGTTTCATTCCACTCGAGAAATCATCAAAAAAGACAGATGAGAAAGCAGCGCAAGCAAGAAAAG
AAAACAGAATAGCATAATAGCGCGCTACTTTTCAATTCGGAATAGAAAGAGAAAGATTAGAATGC
GAGAAAGAGCAAGCAAGAAAACAGAAGAAAGAAAGGCGCGAAAGAGCAAGGTGAAAAGCTCAAGT
TCCCATGCATCAATTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCCTTCTCCTACTTTCGAG
CCAACTTCCGAGCCAATTCGAGCCGATTCCGAGTCCCTTTACTAT
Right flanking sequence: Indices 521736 -- 522235
TCTATATACGGAGATCGAACAGCGCAGCGGGCAGCGCTGGGAGATTTTCAGTACTCCAAAGGCTT
ATATGCAATGCATTTCTTACTTCACAGATTCCAATTTGTACTCCTTCTCCCTAATAAAGTGTACT
CCTTCCGCGCCCACCTTCGAGCCCCTACCTAAATAAAACCACCCACCCTTGCCAGAGTCCTCCGC
AGCGCAGATCTTAGAGCCCGTCTCAGTCCAGTCCGGTGCTTGTTTCCTTTCCTCCCGTTTTGCTA
TCGCTGCTATCCTTACGAGCCCCAGCAAGAGAACTCCCGCGCTAAGGCGCTCCGCTCAAGCCTAT
GAAAGAAAGAAAATCCGGAAGGAATAGAAGAGGATTAGGGTTTAAGACTCGCCCGAACTCCCGAA
CTGGTAAAAAATACTAGTAGCTAGTTGGTCTCACTCTTCTTATAGATTAGCAGGTTATTCTGTAA
TTCTCCTTTCGCCTTATCAATAAAGAAATACATTTTCTATTAAAG
Found at i:545635 original size:25 final size:25
Alignment explanation
Indices: 545601--545654 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
545591 AAGCGCAACG
545601 AGCAAGAAAACTCCTGTGCGTCGGA
1 AGCAAGAAAACTCCTGTGCGTCGGA
545626 AGCAAGAAAACTCCTGTGCGTCGGA
1 AGCAAGAAAACTCCTGTGCGTCGGA
545651 AGCA
1 AGCA
545655 CAACGGCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (25 bp):
AGCAAGAAAACTCCTGTGCGTCGGA
Left flanking sequence: Indices 545101 -- 545600
TCGTCGTATGTATGCTCGACTTCGGTTGCCGGTGCTATATATAGGTAGGAGTACATTATGGCAGG
ATCAGTCACCCGGACAAACCAACCCTCCTCCAAGAAGAATTGTGCTATGCCCCCCCGATCCCTAT
AGAGCGAAAGAGCTGCCTGGTGATCCCTAGGTTGCAGCACGTCCGGTCGTTAACTCCTCGCTAGC
TGCCGCCGTTTCTAGGACCGACCGACGCCTCACCTGCACAGGTACCTACGTAGTGTAGTGTCGGT
CGCACATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGAACCTGGGGTATTCGAGCCTGCTGC
GTACGATTAGACAGCCTTGCGGCGGCAAAAGGATTAGACGTCCTCCCATGCTACGGTTCCCTGCG
GTCCGAACCCGGTGCCGCATTAGGTTAGGGAGCTGGGCTTTTTTTGCTCCTCTCCCAGCAAGAAA
ACGGATGTGCGGCTAGCAATCAAACGGATGCGCGGAAGCGCAACG
Right flanking sequence: Indices 545655 -- 546154
CAACGGCTTTCGCGCTAGCTCAGGCCGTTGCTTGTTGCTTTCGCGCGTTTGCGCTCGGGCCCTTG
CTTGTTCGTTCGAGCTGCTTCGCTCCTCCGCATCCCAAAGCGCGCTGCCCCCCTAGGCGCGCAAC
ACTAAGTAATCCAAGCCAACCCACATTACTGACTAACGGTGGATAATCATATTTCTTAGAGGTAC
TAAATACAACTCCATGAATGAGCAAAATAGAGGTTGCATTAATGATAAAGATCTCTGGGGAAACC
GCTAAAAAAAGATTGAACATGTGGGAGGATCCGAACGAATTCTGTTTTCATTTTCCCCGTATGGA
GCACTGAGTTACAAACGTTACGGTCTTCAACAGGCAGGCTGCACTCTAGGCGGTAATTCTGTATT
TCTGAGTCGAAGCAATCTCTGGGTTTTTCCTTATCCGGAACGGGCCTTGCAGATGCCGAGGGAGA
CTAAAGCCTAGTGTGTTTTACGCTTGTGACTCGTCATCCGAATTC
Found at i:569463 original size:31 final size:31
Alignment explanation
Indices: 569428--569517 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 31
569418 AAACGGATGC
569428 AGCAATCAAACTCAATAGCTAAGGCGCAACG
1 AGCAATCAAACTCAATAGCTAAGGCGCAACG
** * **
569459 AGCAAGAAAACTC-CT-G-T---GCGTGAC-
1 AGCAATCAAACTCAATAGCTAAGGCGCAACG
569483 -GCAATCAAACTCAATAGCTAAGGCGCAACG
1 AGCAATCAAACTCAATAGCTAAGGCGCAACG
569513 AGCAA
1 AGCAA
569518 GAAAACGGAT
Statistics
Matches: 41, Mismatches: 10, Indels: 16
0.61 0.15 0.24
Matches are distributed among these distances:
23 10 0.24
24 1 0.02
25 6 0.15
26 1 0.02
28 1 0.02
29 6 0.15
30 1 0.02
31 15 0.37
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.13
Consensus pattern (31 bp):
AGCAATCAAACTCAATAGCTAAGGCGCAACG
Left flanking sequence: Indices 568928 -- 569427
GAGCGAGCGAGCGAAGCCTTCCATTTAGTGGCTTCCCCCCTTATCCCTCACCCTACTCTTTCATT
TCCGCTTAAGCTTCCCCGGTTTGTGGGATTAATTGATTTCCTACCCAAGAACCATAATCTTTACT
AGGAACAGCTTCTACGACAATAGATAGGGGTCAGGTTTGGTTTGGCATCTATGCCCCCCTGCCCT
CCAAACAGTATGGGAGCCTTTCAGCTCGTACTGCTCACACTCCTAGATCTTCACGGCACCTCCTC
CACCATAGTGTGAGCTGGGAGCAGCTCCGAAAAGCGAGGCCTACTTACAAATTAGCTTTCAACAA
CACCACGAAAAAAGTAAACTATGGTTGCCCACTGATCTGATCATAGGTGAAATCCAATCCCTTCG
CCTATCGGAAGCGAGAAAACGAGCAGCAAGCTGAAAAAGCCCTAAACCCTGCAATCTTCCCTCCT
CTCCCAGCAAGAAAACGAATACCGTCCTAGCAATCAAACGGATGC
Right flanking sequence: Indices 569518 -- 570017
GAAAACGGATGCGCGAAGCTAAGGCGCAACGTGCGAAGCGGCTCGAGCGTCAGCTCGAGGGCTTG
AGACGCTAGCGCGCTCGGGCCCTTGCTTGTTCGAAAGCTCCGGGCCCTTGCTTCTTGCTGCTCGA
GCAAAGCGAGAGGGCTTGAGACGCTAGCGCGCTCGGGCCCTTGCTTGTTCTTTCGCTAACGTGCG
CTCTGGCCGTTGCTTGTTCGCGCAACGTGCTCCGCTGCTCGAGCAAAGCGAGAGGCCTTAAACGT
TAGCGTCGCTCGAGCGTCAGCTCGAGGGCTAATGGCGCGTTTGCGCTTTAGTTTTGTTTTCTTGC
TGGGAAAGGAAAGCTTTTTTTTGTGTTTGGTCGCAAAGCATCTGGTTTTTTGTTTTATACGTTAG
CCAATAAGTGAGTTCATTTCCACTTTCTTGACATCAAGTAAGAAGAAGAAGATCAGATCGAATCG
ATTATTACTATCTATCGACTTGCTTGCTAAGACTTCCCAATTAGT
Found at i:600501 original size:21 final size:21
Alignment explanation
Indices: 600475--600514 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
600465 TTGCAGGGGC
*
600475 CCGATAGTCCGAGGATTGAGA
1 CCGATAGTCAGAGGATTGAGA
*
600496 CCGATAGTTAGAGGATTGA
1 CCGATAGTCAGAGGATTGA
600515 TTCTCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.15, G:0.33, T:0.23
Consensus pattern (21 bp):
CCGATAGTCAGAGGATTGAGA
Left flanking sequence: Indices 599975 -- 600474
TAGCTCGAATTGGATTTATTACCATCGGGACCGGTACTTTTCTGTGATCAAGCTAAAAGCCTGTT
AAAGGCCAGCCAATCTCTGAGTCTAATATTTTCACTTTCAATAGTGACATACAAGTCTATATTTT
TCTTGCTCCTTGCCTTCTTTCCATACTAATAAGGGTAACGAGACTGAGACTCAATCTTTCTTTCT
TTAGTGACACGAGTTCTCTTCCAAAGCTTACGCTTGCAACTATATGGTATTCCAAAGCTTACAAC
AGAATGACTTTCCATTATCTTCCTTGTATAGATATTACGCTTACGGGATCAAAGTCTTCCATTCC
TGTAAGAGAGTGAAGTGCCTTCCCCCTTGCTTCTTTCCCCGGGGTAACGGAACTCAAACTCTGAA
CTCAAAACTCCCTTTCTCGGGCTCAGGCCATAGGGAGAGGAAAGGAAGAAACTTTATAGCTATAG
CTCGACTTACAGTACAGGAGAGGAGGGAAGACAGCTTGCAGGGGC
Right flanking sequence: Indices 600515 -- 601014
TTCTCTTTTTCAACCGACATGATCCATTCACTGAAGTACGTTCGAGCTCATACCTTAGAATGCTT
TCTTCTTTTGCAGTGGATATCTCGTCTTGGTCTTATCTTATCGTCTATGGTCTTCTTCCCAGCAT
CATCTTTCTTTCTTACTCGATAGGGAAGTCAAATCGTATCCTTCTTCCCCTTTATCCTCTAGTAG
TAACTTCTTGCTTTGCTTACAGATGGATATCTAGTGGGTAAAGATGCCTTCTTCCTGTAGCAGAA
AAGTTAAGCCTTCCCTCAGCCCTTGACTCACTTGTAGCCCCTTGATTCTAAAGATAGAATCTAGC
CTATACCTATAACCCGATTTGCTCGAAAGGAGGAGCACTATCTCTTGTGTTATATCTTCTGTTAA
AGCCCTTTTATCCGCGTTGATGTAGTTATCATACTTGTAGGATTGAGCTGATTGAATGACTCTTG
GTTAGAGATAGGGACCCCTTCAAGGATTAGATCCATGGGTTGGTT
Found at i:646773 original size:11 final size:11
Alignment explanation
Indices: 646752--646784 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
646742 AGCCGAGATC
646752 ACTAA-CTAAT
1 ACTAATCTAAT
646762 ACTAATCTAAT
1 ACTAATCTAAT
*
646773 ACTAATATAAT
1 ACTAATCTAAT
646784 A
1 A
646785 GAAATAGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (11 bp):
ACTAATCTAAT
Left flanking sequence: Indices 646252 -- 646751
CTTGCGCCAAAGATCTTACCATTTCCGAAGTAACTGGAGTTACATCTATTTTTCCATTTCAATTC
AAGAGTTCTTATGTGTTTCCACGCCCCTTCGAGACCCCGAAAAATGGACAAATTCCTTTTCTTAG
GAACACATACAAGATTCGTCACCACAAAAAGGATAATGGTAACCCCACCATTAACTACTTCATTT
ATGAATTTCATAGTAATAGAAATACATGTCCTACCAAGACAGAATTTGTAACTTGCTATCCTCTT
GCCTAGCAGGCAAAGATTTACCTCCGTGCAAAGGATGATTCATTCGGATCGACATGAGAGTCCAA
CCACATTGCATTGCCAGAACCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCAT
GTTACAATCCTCTTCCCGCCGAGCTCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGG
TGCCAACAGTTCATCACGAAAGAAAGGACTCACTGAGCCGAGATC
Right flanking sequence: Indices 646785 -- 647284
GAAATAGAACTGTCTTTTCTGTATACTCTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATC
GATCGGATCATATCGGATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCG
AAGACCCACCAAAGCACGAAAGCCGGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATA
ACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCTAATTCGGGATTTTCCTTGGGAGG
TATCGGGAAGGAATTGGAATGTAATAATATCGGATTCATACAGATACAGAAGAAAGGGTTCTCTA
TTGATTCAAACGCTATACCTACGGGATAGGGATAGAGAAAGAGGAAAAACCGAAGATTTCACATA
GTACTTTTGATCGAAAAATCAATCTTATTTATTTCGTACCTTTCGCTCAATGAGAAAATGGGTCA
GATTCTACAGGATCAAACCTGTGGGACTTAAGGAATGATGGAAGG
Found at i:647344 original size:15 final size:13
Alignment explanation
Indices: 647308--647345 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
647298 ATCAAAAAAG
647308 AAAAATAA-TAAA
1 AAAAATAAGTAAA
647320 AAAAATAAGTAAA
1 AAAAATAAGTAAA
647333 TAAAAATGAAGTA
1 -AAAAAT-AAGTA
647346 GAAGAGTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 6 0.26
15 5 0.22
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (13 bp):
AAAAATAAGTAAA
Left flanking sequence: Indices 646808 -- 647307
TACTCTCCCCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCGATCGGATCATATCGGATCATAT
AGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGAAGACCCACCAAAGCACGAAAGC
CGGGATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTA
ACCCGTCAATTTTGGATCTAATTCGGGATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAATGTA
ATAATATCGGATTCATACAGATACAGAAGAAAGGGTTCTCTATTGATTCAAACGCTATACCTACG
GGATAGGGATAGAGAAAGAGGAAAAACCGAAGATTTCACATAGTACTTTTGATCGAAAAATCAAT
CTTATTTATTTCGTACCTTTCGCTCAATGAGAAAATGGGTCAGATTCTACAGGATCAAACCTGTG
GGACTTAAGGAATGATGGAAGGAAATAAAAAAGAAATCAAAAAAG
Right flanking sequence: Indices 647346 -- 647845
GAAGAGTCCAGATTCCAAACGAACAAATTCAAACTTGATTGAAAAGGATCTTTCTGATTCTCGAA
GAATGAGGGGCAAAAGGATTGATCGAGAAAGATTTCTTGTTCTTATTAGAAGATCGTGATTGGAT
CCACATATGTTTGGTAAAAAGAATAATCTTCTCCTTTGAGAATAATCAAAAAAGGAAAGTGTTCA
ATTGGAACATGAAAACGTGACTGAATTGGTCCTAGTTACTCTTCGGGACGGAGTGGAAGAAGGGG
GGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAG
GTGAAAATCTCATGTACGGTTCTGTAGAGTGGCAGTAAGCGTGACTTATCTGTCAACTTTTCCAC
TATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGAT
TTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAG
Found at i:652822 original size:18 final size:18
Alignment explanation
Indices: 652799--652834 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
652789 CTATCTATTT
652799 TATTTAGTTATTCAGTTA
1 TATTTAGTTATTCAGTTA
652817 TATTTAGTTATTCAGTTA
1 TATTTAGTTATTCAGTTA
652835 AACCAATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.56
Consensus pattern (18 bp):
TATTTAGTTATTCAGTTA
Left flanking sequence: Indices 652299 -- 652798
GATCTTCTCTATCTAATGAATGGGGAGTCCGTTTTGAAATCGTCCGCCCTGCACCCACCCCCCTA
TATGCTTCAACAGGAATCACACAGGGGTAGATTGATACAATAGAAACCTCTGGTAAAATGCCCAC
CCGTAACCCAGCGGATAAAGTACATTACATAGTCCGTTTTAGGGATTGGCGACTTACCCATTCAA
TGACTTTGGCACCGGACGTTCCCAAAATGGGTACTGTACTCTCGGGTCGGGTGAATTCAATAATA
GACGCCTGTTGGCATTCCAGCCTTCCTTCCCCTTTCAGGGCCTATCCGAAAGGAAAGAGAATTCA
GTACTTCTTGGTCGTGAATATCGGAATAGGACAAACCGCCCCGTGGATATCTTTGCTTCGGAACA
AAACAATTAGAATTAGGCTCGCTCAATTGAAAGATCCCCTATATGGATCTTTCAATTGAGAAGAG
CCATCGACCTGAGACGAAGAGAAAGAAAGGTCTGTCTATCTATTT
Right flanking sequence: Indices 652835 -- 653334
AACCAATGATTCGTTATTGGAGCAGATAGCAACAACCATTTCATCCGGCATACGTATTTTTGATT
TTTCAATGGATTTTCATCTTTCATTAATGGAAATTTTTTGATGTAGTGAGTAATAGCTCTGGTTG
TTCGCTCTTCAAGAATTCTTGTTTAGGCAGTTCATACCATCCATACATAATGTTTTGATCTAAGA
TTTCAATTCTTCCATGTTTCCGCAGTAGCATATTGTTCCATGGAGCTAAGGTCCAAAATATGGAA
GAAACTGGTGTTTCCACGACTCTACCACCCAGTCAATTCTGTTTCACTTAATCTCTATTTCATGG
CCACATATCTTTCCGGCTAAGGAATGGGAAACTCTTCTTTTGTTACATGAATTCTATTTTCATTT
CATCCGGGAAAAGCCATCTTTTTCTCAACAATGTCTTTGTCATTTGATCCAATAGCGTTCCGTTA
GATAGGAACAGATTTGATAAATACTGATAACTCTCGGATAGAGTA
Done.