123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_040998
Parameters: 2 7 7 80 10 50 500
Length:  698138

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21953--22039	42	2.1	42	93	0	147	28	27	33	10	1.90
25499--25529	15	2.1	15	93	0	53	58	0	35	6	1.24
65323--65390	34	2.0	34	100	0	136	32	26	35	5	1.81
65404--65488	31	2.8	30	89	5	125	5	31	22	40	1.78
83952--83988	17	2.1	18	85	14	51	59	2	29	8	1.40
110041--110196	31	4.8	31	75	19	131	6	32	20	41	1.78
110029--110179	36	4.4	36	78	16	176	5	32	21	39	1.78
110115--110165	17	3.0	17	88	0	84	7	31	15	45	1.75
120025--120103	25	3.2	25	94	0	131	13	30	21	34	1.92
120204--120316	29	3.9	29	100	0	226	28	19	35	16	1.94
135745--135798	25	2.2	25	89	0	81	35	20	31	12	1.90
140696--140755	20	3.0	20	97	0	111	23	10	16	50	1.75
159870--159949	6	13.3	6	95	0	61	71	0	27	1	0.94
159886--159951	6	11.0	6	100	0	132	66	0	33	0	0.92
183566--183608	18	2.4	18	81	18	54	34	25	20	18	1.96
185755--185817	31	2.1	30	96	3	117	38	23	34	3	1.71
187839--187892	25	2.2	25	89	0	81	12	31	20	35	1.90
191253--191306	25	2.2	25	89	0	81	12	31	20	35	1.90
191847--191871	12	2.1	12	100	0	50	24	20	40	16	1.91
193606--193659	25	2.2	25	100	0	108	37	16	35	11	1.84
225140--225178	20	2.0	20	94	0	69	41	25	28	5	1.77
267050--267103	25	2.2	25	100	0	108	33	24	27	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348209--348251	21	2.0	22	86	4	61	9	41	18	30	1.82
349887--349940	25	2.2	25	100	0	108	14	27	24	33	1.94
351898--351951	25	2.2	25	89	0	81	12	31	20	35	1.90
389267--389358	28	3.3	28	100	0	184	31	19	33	15	1.93
437721--437837	61	1.9	60	86	10	166	10	29	35	24	1.88
462175--462228	25	2.2	25	89	0	81	12	31	20	35	1.90
468612--468682	30	2.4	30	100	0	142	28	14	39	18	1.89
481015--481056	10	4.0	11	81	6	52	38	4	19	38	1.73
492019--492079	31	2.0	31	100	0	122	37	22	36	3	1.71
494978--495031	25	2.2	25	100	0	108	14	27	24	33	1.94
502927--502980	25	2.2	25	89	0	81	12	31	20	35	1.90
521706--521735	15	2.0	15	93	0	51	20	23	20	36	1.95
545601--545654	25	2.2	25	100	0	108	33	24	27	14	1.94
569428--569517	31	3.2	31	61	23	79	40	25	21	13	1.89
600475--600514	21	1.9	21	89	0	62	30	15	32	22	1.94
646752--646784	11	3.1	11	91	4	50	51	15	0	33	1.43
647308--647345	12	2.8	13	88	11	51	73	0	7	18	1.06
652799--652834	18	2.0	18	100	0	72	27	5	11	55	1.57

Tables:   1

The End!