Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_040989
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 520691
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:1381 original size:70 final size:70
Alignment explanation
Indices: 1268--1407 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
1258 GGACAGTCAG
1268 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
1 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
1333 CTCAA
66 CTCAA
1338 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
1 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
1403 CTCAA
66 CTCAA
1408 TCCGTTGCTT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (70 bp):
AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
CTCAA
Left flanking sequence: Indices 768 -- 1267
TACTTTGTCCAGCAGCCCTTGTTTCTAAGCACCCATCTCTTGCTTTGCTTAAACTCCTCCTTGCA
ACCAGAAACCTATCGCCCCTCTCTTTTCAAAACAAACAACGCGGAGCGCCTTGTGAAGTGAAAAG
ATGAGCTATGATGACTTGGCTTCCTTTCTTCTTTTCCTTGTGCAAGTCAACTGTTCCCTGGCACA
CCTTCAGTTCAGCTGTGACATCTTGCACTTGTAAGATCACTTGCTTGCCTTTATGCTTGAGTTTC
AGCATTCCTTTACTCCAGTCAACTGTCATTTGACCAAAACTTGACAACCAGTCAATGCCTAAAAT
AAGATCATAACCTTGTACATCAAGCACCCTAACTTCTGTTTCAAATTCATGGTTTTGTAACTTGA
ATTGAAGGTTGTCACATTTGGTACTGGTCAATAACTTACGGCGAGACGAGCAGCCCTATACCACG
TGTAGCCACACTCGTCTGTCCTTTTCTACTTAGTTGGACAGTCAG
Right flanking sequence: Indices 1408 -- 1907
TCCGTTGCTTGCTTCTCTTCTGTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAA
GAGAGGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTTCAGTCTACCGCTCATGTT
CGACGCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGA
GGCGAAAGGCCATGGGGAGAGAGAGCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCC
AAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAG
CTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTT
CATCAAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCA
AGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGGAGTT
Found at i:11673 original size:35 final size:35
Alignment explanation
Indices: 11627--11694 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
11617 ATAGGTCTTA
*
11627 TTGTTTGTTGGGAAACCCAGGAAGACTTGCTTTGC
1 TTGTTTGTTGGGAAACCAAGGAAGACTTGCTTTGC
11662 TTGTTTGTTGGGAAACCAAGGAAGACTTGCTTT
1 TTGTTTGTTGGGAAACCAAGGAAGACTTGCTTT
11695 CATTGTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (35 bp):
TTGTTTGTTGGGAAACCAAGGAAGACTTGCTTTGC
Left flanking sequence: Indices 11127 -- 11626
CAAGAGGAGGAGGAGGGAAACGTATGAGATGAGGGATTTGCACTTGCTACACTTACCAGATGTGA
GGTAGTGAAATGCTTTCCTTCCATAGCTAACTTTCCCATAGCCGTAGTTCCAGTCTGACTCTCCG
AAGCCTATGACCAAGAGTAAGGGCACTCAGCAGGCTGCACCGATTATAGAGAGTACGTCGTCTAT
TCATTCCACTCATTCCGAACGTCCAAAGCTCAGAATTCATAAAGTTAATAGGAGGAGAGGCGTAC
TTAGGTTCGTAACATACCTTGAGAGGAAGCCTTGTTGAATTATTGGCATGGGAGATATTAGCTTA
ATGGCAAGGGCTTGGGTTGGGGGAAGATGCTCTGCTTGAGTCAGCGGATATCGTTTATGACGAAT
AAAAGAAATCATAGGCAGTTACCTCTCCAGTAGCCGGGTATGAGAGGTCTAGTTCGGTGAGAATA
GATAGGGATAGAAAGTCCATCCTGGTGCACATGCTATAGGTCTTA
Right flanking sequence: Indices 11695 -- 12194
CATTGTGAAACGTTGGTACTCACTAGTAAAGAAAGACCAGCTTGAAACATATTCAAATAGAAACT
ATAACTCAAGATGAAAGTCGATACCGTATGAAAAATTCGGCAATCCACCACCCACCAGCTAATCT
GCAAAATTGAGAGTTTCATATAGAAGACGCGAATAGTCTTTGTCAACGCTCCAGCGGTAACCGCG
CTCTTATACCGTCTGTAAGGTTTCGTTTTTCGCAGCGCGCCTCGCCTCGAGATAAAAAGAGCATG
TCGCACCATCTTTGCCTTCCTTTCCTCCTCGCCTTGTGCCAAATAGCGAATATAGAAGAAGAGTT
CTTCTGCTTCCTGCTCAACAACTTAATAATAAGGAAATAAAAATCTATATCTATATACGCAACAT
AAGCTCCTTCGTACCCAACAACTTAATATAGGATAAATCCAAAGTCCTAGTTTGAAACATCAATA
AAATGCATATTCTTTCTATACCAGTGGACAAGAAGAGATGGAATG
Found at i:33510 original size:23 final size:23
Alignment explanation
Indices: 33484--33531 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
33474 TCATAGTTGT
*
33484 TCTATTCAATCCAATCATTCCTA
1 TCTATTCAATCCAATCAATCCTA
*
33507 TCTATTTAATCCAATCAATCCTA
1 TCTATTCAATCCAATCAATCCTA
33530 TC
1 TC
33532 ATAGTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (23 bp):
TCTATTCAATCCAATCAATCCTA
Left flanking sequence: Indices 32984 -- 33483
TTCATTCAGTAGTTGAAGCTTATCCGTAGAGAAGTTATGTTACAGAAGTAGGAGAAAATCTATCT
ACATTTTCATTCACTTGAATTTGTAGATCAAAGGTTTACGGTTACCAACTCGCCCCGGGTGGGTT
CTAGGAATGAGAGCACTTATGTATCGAGGGGCTTTAGCACAAAATGAAGTAGCTAGCTAGCTAAC
TAATAAGCTATGATGAAAGGACGGGGCTAGGGGAAGAAAATCATTGAAATACCACTAAGGCCGGA
AAAAGCAAGTGCAAGTCCCGATAACTGGAAGAAATGCCTACCGTGCGTAGTACCGATGTACAACC
AAGACTAAAATTGGACTAGACCTTTTATCTTGGGCTCGTTCCGAGTAAGGATTCTTTTGCCTACC
CCGATTCAAGTTCCGACAACGGAGCTAGTTCTTCCAAGGATGGATATGCACACCGTACCGACTTG
TGAGACCAACATTCTATTCAATCAACTATTATGTTTCATAGTTGT
Right flanking sequence: Indices 33532 -- 34031
ATAGTATTTGGTTTCATCTTCATTTTTCAATATAGTATAATTTCGTTTATGTCAGGTAGCACACC
TACCGATAAGCAGAAACTGATCATTATACCTAAACCCATGGATAGTAACCATTTTCTTTTATGAG
GATTCTCTGTTTCCGGTATAGTTCCAAACATATCATTAAACGGATGATCATTTTGAAAGGCAGAC
ACCACTGTTTGAGTAAGATCCTTAGTCTCCTGCAAAATCATATGATTGTAACCTCTAGCATGTGA
ACACTCATCGAGAAAACTGTTCTATCGATACTGGAAGCAGTTCCTCGGGAAACATTTCAGGGCAG
CCTGGTAAAAACTTCCACCATACAGTTGTGTAAAAACCAAACTTGACTAGAAGAAAGATATTACC
GTATTCAAACGAGACTCCATCATGTGATGTTACAGTCATAATATTGACTAAACAATGGGTTACTT
TATAGCTCAATTCTTGATATTTTTCTTTCATTCCTTCAGCATAAT
Found at i:39616 original size:24 final size:24
Alignment explanation
Indices: 39584--39650 Score: 125
Period size: 24 Copynumber: 2.8 Consensus size: 24
39574 ATCGTTCTTT
39584 CTCTCTCTGGTCGGTCTTGGCTGG
1 CTCTCTCTGGTCGGTCTTGGCTGG
39608 CTCTCTCTGGTCGGTCTTGGCTGG
1 CTCTCTCTGGTCGGTCTTGGCTGG
*
39632 CTCTCTCTGGTCGATCTTG
1 CTCTCTCTGGTCGGTCTTG
39651 ACCATATTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.01, C:0.30, G:0.30, T:0.39
Consensus pattern (24 bp):
CTCTCTCTGGTCGGTCTTGGCTGG
Left flanking sequence: Indices 39084 -- 39583
ACCAACGAAACGAAGAAGTTTTTTATTGGTCTTTATCATGGCACGGGATAACCCCCTCGAAAGAG
GAGTTAAAAGAGGTCCTCGAAAAAACTAGCGACTTCCCCCTTCCCTCACCCGAGAATTGCATTTC
CGCTTCAGCTTCCCCGGTTTAGTTGGTTTGGAGGATTAATTGATTGGATACCCAATCCGCATAAT
CTTTCAAAGTCACTGCTTCTACGACGATAGGCGTAAAGGCATGATTAGTTCCACAAATCTCACTG
CACTGACCATAGTAAACTCCTTCTCGTTGTACCGAGATGGAGGTAAGATTTGACACCTGAGTAAG
GTACAGCCCAACTATGAGGTACATCAGCGGGTGTTACAATCATACGTAGATGAGTTTTGGCTGGT
ACAACCACTCTATTGTCAACTTCTAATAAACGTGATTGACCCAATTCTGGATCATCTTCTGGAAT
CATATAACTGTCAAAAGTGAGTGACTCCTCATCTCATCGTTCTTT
Right flanking sequence: Indices 39651 -- 40150
ACCATATTCAATTCTATTACTTTTACGACTCTTAAACTAACACCCTTCAACCACGAATAGTTGAA
CTCGTGAAAAACTGCAATACCAGCTGTTTTTCCCGAGTTCAAGTCATTTTGGTGAAGTACGTCCT
TTATAATCTTGGAATATTTTCGCAGTAGGGAGATTGCATAAACCAGAAAGATTGTAAAAAACCAA
AAAGCCAGTATTCCGACCTGTCCAGGTATAAGAGTTAAAAAAGAATTTTTGATCCAATCAGTCAT
ATGTATAAAAAACCCATTTGTACAGCTCTGCTACCAATCAATAAAGCAGGTAGACATTTAGTGGT
CGACCTTGGTTTTTCCAAGGAAACTAAAAACAAGAACATTCGAACACGCACTAAAATGACAAAAC
AAAATGCTAGTTGCCTTCTAACGCATACACTTCCGCGTTTGTCCCATCGGCGAAGGCAAGGCCAA
TGATACTTCCCTTTCTTTGTCGTTGGTAATGATTCTACTACGGTG
Found at i:54737 original size:12 final size:12
Alignment explanation
Indices: 54720--54756 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
54710 AAATCTAAAA
54720 ATAACAAATAAT
1 ATAACAAATAAT
54732 ATAACAAAT-A-
1 ATAACAAATAAT
54742 ATAACAAATAAT
1 ATAACAAATAAT
54754 ATA
1 ATA
54757 GTTAATGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.39
11 2 0.09
12 12 0.52
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAACAAATAAT
Left flanking sequence: Indices 54220 -- 54719
GCACTAGCGATTACTTTCTTTCTGACCTTCAGCCGAAAAATTCCATACCTTCCACCGACTTCTTT
TGTGTATGGCCAGAACGTGATGCTTTCCAATGCCGAGTACTTTTCTTCACAATGTATGAAGCCCG
TAAAACCGAAATCGATCCAAATCCACGACCTTGACGATTGAGGAAAAAGGGTATGTATTATTATG
GTGTGAGCCTTCTTTCTTTTTGGCCTTAGATTATCATAAGCGAGGAATGGTGCGAGCTAGCCTTC
AGACTATACTTTTTTTTTGTAGGGAAAGGGAAAAATGGAGAATATCTTTAAGAACCCTAGACTGA
ATTTCACTTGGAGCAACAGGGGTCAGGTCACACTATATCAATATCATAATTTTCTATTTTTTATA
ATAGATACTGATTAGCCGTAAATCAATTTGATTTTGTTATGCCATTAAGGAAACGGGGATACAAT
ACCCATTTTAGAACCGTTCACTACTAACAAATAGAAAATCTAAAA
Right flanking sequence: Indices 54757 -- 55256
GTTAATGGTTCCAATTTGTCCTAAATTTATCAGTCTGTGACTGGAAATCCTTTCTCTTTTCAATA
GAAAGAGAAGGTATTTAAGCAGTGTGTGTTTTGAGATACAATCAATCGAAGAGAATAAAACTGGG
TCCAATAAAAAACAGGAAAGGAATGAATTTATTAAAAGGGATTGGAAAGGGATAAGTACAAAGGG
ATTCGACGATCTAAAAAAAAAGAAAAAAAGGTTTAGTAATCCCCTCCTATGAAAAATAATTAGTA
TAGTAAATGGATGAATAAGATTTATCTCGATTTAGAATCGGATTTGGCGGCATGGCCAAGCGGTA
AGGCAGGGGACTGCAAATCCTTTATCCCCAGTTCAAATCTGGGTGTCGCCTGACCCACTAAATAC
TTTGGATTTCTTATTATCATAAGTAGTGTTCGAGATCACAAGGCTAGAATGTCTTGTGTGCGAAA
TAGTGCCATTGGTTAGTGAAGTTAGCTGACAATCGTCATATCATA
Found at i:54745 original size:10 final size:10
Alignment explanation
Indices: 54719--54754 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
54709 AAAATCTAAA
54719 AATAACAAAT
1 AATAACAAAT
54729 AATATAACAAAT
1 -A-ATAACAAAT
54741 AATAACAAAT
1 AATAACAAAT
54751 AATA
1 AATA
54755 TAGTTAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 13 0.54
11 2 0.08
12 9 0.38
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (10 bp):
AATAACAAAT
Left flanking sequence: Indices 54219 -- 54718
AGCACTAGCGATTACTTTCTTTCTGACCTTCAGCCGAAAAATTCCATACCTTCCACCGACTTCTT
TTGTGTATGGCCAGAACGTGATGCTTTCCAATGCCGAGTACTTTTCTTCACAATGTATGAAGCCC
GTAAAACCGAAATCGATCCAAATCCACGACCTTGACGATTGAGGAAAAAGGGTATGTATTATTAT
GGTGTGAGCCTTCTTTCTTTTTGGCCTTAGATTATCATAAGCGAGGAATGGTGCGAGCTAGCCTT
CAGACTATACTTTTTTTTTGTAGGGAAAGGGAAAAATGGAGAATATCTTTAAGAACCCTAGACTG
AATTTCACTTGGAGCAACAGGGGTCAGGTCACACTATATCAATATCATAATTTTCTATTTTTTAT
AATAGATACTGATTAGCCGTAAATCAATTTGATTTTGTTATGCCATTAAGGAAACGGGGATACAA
TACCCATTTTAGAACCGTTCACTACTAACAAATAGAAAATCTAAA
Right flanking sequence: Indices 54755 -- 55254
TAGTTAATGGTTCCAATTTGTCCTAAATTTATCAGTCTGTGACTGGAAATCCTTTCTCTTTTCAA
TAGAAAGAGAAGGTATTTAAGCAGTGTGTGTTTTGAGATACAATCAATCGAAGAGAATAAAACTG
GGTCCAATAAAAAACAGGAAAGGAATGAATTTATTAAAAGGGATTGGAAAGGGATAAGTACAAAG
GGATTCGACGATCTAAAAAAAAAGAAAAAAAGGTTTAGTAATCCCCTCCTATGAAAAATAATTAG
TATAGTAAATGGATGAATAAGATTTATCTCGATTTAGAATCGGATTTGGCGGCATGGCCAAGCGG
TAAGGCAGGGGACTGCAAATCCTTTATCCCCAGTTCAAATCTGGGTGTCGCCTGACCCACTAAAT
ACTTTGGATTTCTTATTATCATAAGTAGTGTTCGAGATCACAAGGCTAGAATGTCTTGTGTGCGA
AATAGTGCCATTGGTTAGTGAAGTTAGCTGACAATCGTCATATCA
Found at i:59362 original size:14 final size:14
Alignment explanation
Indices: 59343--59370 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
59333 CTATTACTTA
59343 CTATTTCATCTAAG
1 CTATTTCATCTAAG
59357 CTATTTCATCTAAG
1 CTATTTCATCTAAG
59371 TGGAAGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
CTATTTCATCTAAG
Left flanking sequence: Indices 58843 -- 59342
GTAACCATGATGGATAGGATTTTTTCTCTATCCTTTGGACTTGAACGATCCAATTTCAAATCTTG
TTGGAGATTCTTTATCTGGCTTTGACGTATGGGGCCCTTTCCACACTGTTTGAGAAAAGTTTTGC
ATCTTTCCTTTACATCTGAACAGGACGGGCCACTAGTCCCTGATCTGGACGCCGCACCTGGAACT
CCTTCTACTTGTGGTTGTGGGGTTGGCGCCTCCTGAGCTGCTTGACACCCCCTTGTGGGTGGGAA
GGAATAAGTGGTGGATTCGAACCCTCGGTAAACAAAAGCCTACATAGCAGTTCCAATGCTACGCC
TTGAACCGCTCGGCCATCTCTCCTACATAATCTTATTATTGACCAGAAACTGAGTGAATAGCGAG
TTTTCGTATCCCTGCAAGTACAGGTACAACCACAACCGCTCGGGGGTTCCATGGTTCTATTGGAA
TAATTCCTTTCCCATTTCCATGGATACGAGCGGAACTATTACTTA
Right flanking sequence: Indices 59371 -- 59870
TGGAAGAATCCAGGATTTTTTTACTAGGAATTCCGCTAACTCGAAAAGTTTTAGTTTGGTTTTTC
TCCAAAGAGAAAAAGAATGGAAGAATTCTTCTTATTCCATAATATAATAACCCTAGAATTCTGTT
TGTATAACGTACGCTACGCCATACAATCGAAATAGAAAATAGGGTATAGGACAATTAATGACTTT
GAAAACGCGAAATAGCTGATGAGAGAAGTTGTTGTTGAGAAATAGGAAAGTGGAATGAAATCCAA
TCTTAGTCAAATATTTCATATCTCTCCTTGTCCAAACAGAAGGAAAAGGAGACAATTTGAGCTGG
GCGGAAAGCCCATATCTCTCTTATCCATTTAGAACATATGGATCTATTTATAAGAATAGAATTAG
TTTTTATGTTATTTTGTGAAGTAATGAAAATCAATCATTCTATATAGAATGGGTTGCTAATTATG
CCTAGATCCCGTATAAATGGAAATTTTCTTGATCTTCAATTGTAG
Found at i:73450 original size:21 final size:21
Alignment explanation
Indices: 73426--73469 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
73416 GCAAATTATC
*
73426 GACTATGTATACACATTACTA
1 GACTATGTATACACATTAATA
*
73447 GACTATTTATACACATTAATA
1 GACTATGTATACACATTAATA
73468 GA
1 GA
73470 ACCATTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (21 bp):
GACTATGTATACACATTAATA
Left flanking sequence: Indices 72926 -- 73425
AGCTTTTTTTCTTTTACGGAAATCAGGCGAGGCCCCTACTTACCCCCGGGGTAGGTCTGGGGTGG
GGGAAAGAAGAGTGGGTAAAGGGGCTTTCTTCACTTGATTTTGATCGACTAAGAGTTGCTACCTC
GGGGTGTCGACTTAGCTATTTGCCGAGAAATAAGCACAGCCTTCTATCCATTATATCGACGATTA
GGTAGAGCTCTTACGGGGGCAAACCAGGATACGACCGTTCCGCAATAGAACAGAGCATGAGAGAT
ATATACATGAGAGAGAAAGAAGATGACTTAGACTTAGATAGTGATGACACTGCAATTCCTATCCT
AATTAGAACAAGAAAAGGCGATGACGATAGTGATAACGGAACACCGAAAACGGGAGGGAACACCC
ATGTGAGAACCGATATTGAATATCTATTCAAAAGGATTCTGAAAACAGCCATAGAAAAAATAGTG
AAAGGAGGAATTCTGAATGTAATACCAAAGCCAAAGCAAATTATC
Right flanking sequence: Indices 73470 -- 73969
ACCATTACTACAGTCTTTACACATCACAACACAATATACTAACCAACTTCTAGATAATATAATCA
CAGCTTTAGTCTTACTCTCACCCTTCGAGAGGATAAGCACAATCTTAGATTGTATAACGACTTAC
ACACCAATAGCCTTCTTTCGTTTCTTAGGCAACAGCATTCGTCGGTGGTATAGTATAACAACATT
AGCCTGTAATATATCAACTTTCACAGAGAGTATATCAGTGTGGGCTGAATCACATCCAATCTATC
TATATATTGGTGGTGCTATTTTGCATGTTGGATTACTAATTTGGCTCTATATAAATATGGGGTGG
TTTATAGAAAGAGGCGAATATTGGATTGAGAAATCAATTCATTTTGGTAAAACCCTTATCAGTGG
GTGCAGTAACAGAAAAGTGCCTACAATATCACCAATCGATTTAGTGAGCATGGATATAATGTATA
GCGTGCCAACAGCTAGTATAAACCATTTATCTGGTCTTTATAACC
Found at i:85976 original size:20 final size:20
Alignment explanation
Indices: 85951--85990 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
85941 GTGATCCACT
85951 GTAAGAAGATAGTATGTAAC
1 GTAAGAAGATAGTATGTAAC
85971 GTAAGAAGATAGTATGTAAC
1 GTAAGAAGATAGTATGTAAC
85991 TAGAAGGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (20 bp):
GTAAGAAGATAGTATGTAAC
Left flanking sequence: Indices 85451 -- 85950
TAAGAGAAAAGACTATATATGAATTTCTGCAGTACCCCAAGGGTAAAGAGATATCGTAGGAGGAA
GGTGGACTTGAGTTCTCTAAATTCCTTAACGTTCATTGACCAGAGGACTTGATTTCCTTGCTTTT
TGTTTTCAAAGCAAAGGTTTCACCGTATTACCATCGCTTAGTAGACTCCTATTTCTCTTAGCTTA
GTTAGTAGACTCCTATTTCTTTAGATATTATTTCTTCTTCCAATCAATTCCAATCTCCTTCTAGA
ATCAAACAATAGCTTTGAAAGGCTAGGCAAGCAAAGTTATACTCTACTAGGTTGAATTCTTTCTT
CTTTTTGGAATATACGAATGCAGGTAGTTACTACTCTTCCTATAAGATAATATGGATGAGATCCT
ATACATATGTATGAGACTTATAGGCAACAGAGCAATAGGCATAGCCCGAGTACTAAATCAAGGCT
CCCGCATGAACGTAGGAAAGGTTGCTGTCAAGATGGTGATCCACT
Right flanking sequence: Indices 85991 -- 86490
TAGAAGGCGAGACTAGTAATCCAATAGGGGGGAAGGAGAATGTCCAATAGGGGGAAGTAGAATGC
TCAGGTGGGAGGAATCCACTAAATAAAAAATATCTTCTTAAGCAACTGAGCGGCTTAATAACCTT
TTCTCGTATATAAATAATCGAGACCACTGAACATCTTCAACACATTCTACAGCTTTAGTGCACTT
TGGTCTACAACAAGCCAGTGGAAGCAATTCTCCTTGACTTCTCTTCTTTGCTTGGTAGCTCAGTA
TTCGGGAATATGCTATAGATTATCAATACATCTTTCCTTTGCATTGAAAGCCGGCTAGCCTAAAA
TCCCTACTTGAACTACTTCAATGGGACTAGGTATACAGCGATTGCAGGGAATGCCACCCTTATAA
CTACTCAATCAATGCCAATCTCAATATCCGGACTAGGACTCGATGCCGAACATGCATTCTTTTCT
CGGTTGCGGTGTACATCGTTGTAGTGAAAAGAGGGAAGAAGTGTT
Found at i:86046 original size:22 final size:23
Alignment explanation
Indices: 86010--86054 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
86000 AGACTAGTAA
86010 TCCAATAGGGGGGAAGGAGAATG
1 TCCAATAGGGGGGAAGGAGAATG
*
86033 TCCAATA-GGGGGAAGTAGAATG
1 TCCAATAGGGGGGAAGGAGAATG
86055 CTCAGGTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.36, C:0.09, G:0.40, T:0.16
Consensus pattern (23 bp):
TCCAATAGGGGGGAAGGAGAATG
Left flanking sequence: Indices 85510 -- 86009
GAGGAAGGTGGACTTGAGTTCTCTAAATTCCTTAACGTTCATTGACCAGAGGACTTGATTTCCTT
GCTTTTTGTTTTCAAAGCAAAGGTTTCACCGTATTACCATCGCTTAGTAGACTCCTATTTCTCTT
AGCTTAGTTAGTAGACTCCTATTTCTTTAGATATTATTTCTTCTTCCAATCAATTCCAATCTCCT
TCTAGAATCAAACAATAGCTTTGAAAGGCTAGGCAAGCAAAGTTATACTCTACTAGGTTGAATTC
TTTCTTCTTTTTGGAATATACGAATGCAGGTAGTTACTACTCTTCCTATAAGATAATATGGATGA
GATCCTATACATATGTATGAGACTTATAGGCAACAGAGCAATAGGCATAGCCCGAGTACTAAATC
AAGGCTCCCGCATGAACGTAGGAAAGGTTGCTGTCAAGATGGTGATCCACTGTAAGAAGATAGTA
TGTAACGTAAGAAGATAGTATGTAACTAGAAGGCGAGACTAGTAA
Right flanking sequence: Indices 86055 -- 86554
CTCAGGTGGGAGGAATCCACTAAATAAAAAATATCTTCTTAAGCAACTGAGCGGCTTAATAACCT
TTTCTCGTATATAAATAATCGAGACCACTGAACATCTTCAACACATTCTACAGCTTTAGTGCACT
TTGGTCTACAACAAGCCAGTGGAAGCAATTCTCCTTGACTTCTCTTCTTTGCTTGGTAGCTCAGT
ATTCGGGAATATGCTATAGATTATCAATACATCTTTCCTTTGCATTGAAAGCCGGCTAGCCTAAA
ATCCCTACTTGAACTACTTCAATGGGACTAGGTATACAGCGATTGCAGGGAATGCCACCCTTATA
ACTACTCAATCAATGCCAATCTCAATATCCGGACTAGGACTCGATGCCGAACATGCATTCTTTTC
TCGGTTGCGGTGTACATCGTTGTAGTGAAAAGAGGGAAGAAGTGTTGTAGGCCAGGTAGGTTAAG
GCGTAATAAGTCTTTGAGGTCTTAGCGGAACTCGATAGGCCAAAA
Found at i:121746 original size:70 final size:70
Alignment explanation
Indices: 121633--121772 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
121623 GGACAGTCAG
121633 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
1 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
121698 CTCAA
66 CTCAA
121703 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
1 AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
121768 CTCAA
66 CTCAA
121773 TCCGTTGCTT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (70 bp):
AAAATCGTATAAAAATAAAGCAAGAAAACGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTG
CTCAA
Left flanking sequence: Indices 121133 -- 121632
TACTTTGTCCAGCAGCCCTTGTTTCTAAGCACCCATCTCTTGCTTTGCTTAAACTCCTCCTTGCA
ACCAGAAACCTATCGCCCCTCTCTTTTCAAAACAAACAACGCGGAGCGCCTTGTGAAGTGAAAAG
ATGAGCTATGATGACTTGGCTTCCTTTCTTCTTTTCCTTGTGCAAGTCAACTGTTCCCTGGCACA
CCTTCAGTTCAGCTGTGACATCTTGCACTTGTAAGATCACTTGCTTGCCTTTATGCTTGAGTTTC
AGCATTCCTTTACTCCAGTCAACTGTCATTTGACCAAAACTTGACAACCAGTCAATGCCTAAAAT
AAGATCATAACCTTGTACATCAAGCACCCTAACTTCTGTTTCAAATTCATGGTTTTGTAACTTGA
ATTGAAGGTTGTCACATTTGGTACTGGTCAATAACTTACGGCGAGACGAGCAGCCCTATACCACG
TGTAGCCACACTCGTCTGTCCTTTTCTACTTAGTTGGACAGTCAG
Right flanking sequence: Indices 121773 -- 122272
TCCGTTGCTTGCTTCTCTTCTGTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAA
GAGAGGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTTCAGTCTACCGCTCATGTT
CGACGCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGA
GGCGAAAGGCCATGGGGAGAGAGAGCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCC
AAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAG
CTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTT
CATCAAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCA
AGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGGAGTT
Found at i:132012 original size:9 final size:8
Alignment explanation
Indices: 131986--132039 Score: 54
Period size: 8 Copynumber: 6.2 Consensus size: 8
131976 ACAAGGAAGC
131986 TCTACTAT
1 TCTACTAT
*
131994 TCTAGTTAT
1 TCTA-CTAT
132003 TCCTACTAT
1 T-CTACTAT
132012 TCTACTAT
1 TCTACTAT
*
132020 TCTAGTTAT
1 TCTA-CTAT
132029 TCCTACTAT
1 T-CTACTAT
132038 TC
1 TC
132040 GCATAAATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 16 0.42
9 16 0.42
10 6 0.16
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.50
Consensus pattern (8 bp):
TCTACTAT
Left flanking sequence: Indices 131486 -- 131985
AGAGTTCAAGAGGAGGAGGAGGGAAACGTATGAGATGAGGGATTTGCACTTGCTACACTTACCAG
ATGTGAGGTAGTGAAATGCTTTCCTTCCATAGCTAACTTTCCCATAGCCGTAGTTCCAGTCTGAC
TCTCCGAAGCCTATGACCAAGAGTAAGGGCACTCAGCAGGCTGCACCGATTATAGAGAGTACGTC
GTCTATTCATTCCACTCATTCCGAACGTCCAAAGCTCAGAATTCATAAAGTTAATAGGAGGAGAG
GCGTACTTAGGTTCGTAACATACCTTGAGAGGAAGCCTTGTTGAATTATTGGCATGGGAGATATT
AGCTTAATGGCAAGGGAATTAGCTTTCTATTTTTTATGTGTGCTCAATTTATTAGAATACGCTTT
CCTCCAACCTGATAAGAAATTGTCAAGTAAAAGCTCTACTTCGAAAGATTACGGTGTCCAATTGT
CAATCAAGATACTACTCTTATCCACGAGCGGGGAGACAAGGAAGC
Right flanking sequence: Indices 132040 -- 132539
GCATAAATCAATATCTAGGGTGGTAATTCCAATACTTGACTTCTTCTTTGCTTGTTCGGGTACTA
GTTGAAATACCAATAGGGAAAAGCAATGGAATCACCTGAAGTTCTGCTTGGAAAGCTAGATGTAG
AAGGAGCCCCAGCTATAGTCCTTTTTTACTCGGGTGCCACCTACTCATACATCTCTTCGAAGTTC
GTGCTGCAACAACGTCTCCCTGCCGAAGGACGAAGTAGATCGTTGATCACTAGCTCTCCCATTGG
AGATGTCAGCTGCACCCTAGAGTGTAAGAATATCAGGATCTTGATAGCAGGAGAAGAATTTCTTG
CAGACCTGATAGTGCTGAAGTCAGATTGTGACATTGATGTGATATTGGGAATGGATTGGCTGACC
AAACACAAGGGTTTGATATCTTGCTTCCCTAGATCAGTCAATCTAGTGCACCCAAGTGGCATGCG
AGTGCAAGTTGATATTGAGCTCAGATCGGAGGATGAGAAGAAAGC
Found at i:132022 original size:26 final size:26
Alignment explanation
Indices: 131986--132039 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
131976 ACAAGGAAGC
131986 TCTACTATTCTAGTTATTCCTACTAT
1 TCTACTATTCTAGTTATTCCTACTAT
132012 TCTACTATTCTAGTTATTCCTACTAT
1 TCTACTATTCTAGTTATTCCTACTAT
132038 TC
1 TC
132040 GCATAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.50
Consensus pattern (26 bp):
TCTACTATTCTAGTTATTCCTACTAT
Left flanking sequence: Indices 131486 -- 131985
AGAGTTCAAGAGGAGGAGGAGGGAAACGTATGAGATGAGGGATTTGCACTTGCTACACTTACCAG
ATGTGAGGTAGTGAAATGCTTTCCTTCCATAGCTAACTTTCCCATAGCCGTAGTTCCAGTCTGAC
TCTCCGAAGCCTATGACCAAGAGTAAGGGCACTCAGCAGGCTGCACCGATTATAGAGAGTACGTC
GTCTATTCATTCCACTCATTCCGAACGTCCAAAGCTCAGAATTCATAAAGTTAATAGGAGGAGAG
GCGTACTTAGGTTCGTAACATACCTTGAGAGGAAGCCTTGTTGAATTATTGGCATGGGAGATATT
AGCTTAATGGCAAGGGAATTAGCTTTCTATTTTTTATGTGTGCTCAATTTATTAGAATACGCTTT
CCTCCAACCTGATAAGAAATTGTCAAGTAAAAGCTCTACTTCGAAAGATTACGGTGTCCAATTGT
CAATCAAGATACTACTCTTATCCACGAGCGGGGAGACAAGGAAGC
Right flanking sequence: Indices 132040 -- 132539
GCATAAATCAATATCTAGGGTGGTAATTCCAATACTTGACTTCTTCTTTGCTTGTTCGGGTACTA
GTTGAAATACCAATAGGGAAAAGCAATGGAATCACCTGAAGTTCTGCTTGGAAAGCTAGATGTAG
AAGGAGCCCCAGCTATAGTCCTTTTTTACTCGGGTGCCACCTACTCATACATCTCTTCGAAGTTC
GTGCTGCAACAACGTCTCCCTGCCGAAGGACGAAGTAGATCGTTGATCACTAGCTCTCCCATTGG
AGATGTCAGCTGCACCCTAGAGTGTAAGAATATCAGGATCTTGATAGCAGGAGAAGAATTTCTTG
CAGACCTGATAGTGCTGAAGTCAGATTGTGACATTGATGTGATATTGGGAATGGATTGGCTGACC
AAACACAAGGGTTTGATATCTTGCTTCCCTAGATCAGTCAATCTAGTGCACCCAAGTGGCATGCG
AGTGCAAGTTGATATTGAGCTCAGATCGGAGGATGAGAAGAAAGC
Found at i:139932 original size:15 final size:15
Alignment explanation
Indices: 139912--139943 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
139902 CCTATTTAGG
139912 ATTTTATTATGCATT
1 ATTTTATTATGCATT
139927 ATTTTATTATGCATT
1 ATTTTATTATGCATT
139942 AT
1 AT
139944 CGGTTGAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (15 bp):
ATTTTATTATGCATT
Left flanking sequence: Indices 139412 -- 139911
GAGGAACAAAGTCCTCTCATGTGAAATCGCATAATTGGCTTTTTTAGGTACGCATTTTCCTCCTT
GAGTGAAGAAGAGGGGTGATTTTCTTATTGAATACGTTACTCATTCCAAAGTAGAAGTTTCCAGC
ATAACCAATATATCCTTGCCATTTCATTGAGGACCAGGTGATAGATGCATTTCATAGGAAAGATT
GGAACGTAGGAATTCAAGTGGATTCGTTAGGGATAACTTATCGTGGGCATTTCTTCTAGAGAAAG
ATTATTCTCATTCACTAGGGAGCGCCGCTACGCCCTTTTTCCCCTATGGTTACTTTGCAACAGAA
CTTCTTGATTCAGATTGAGATTTAGTAAGTGATGCAACAGAGCCAACCAATTGGAGCTACTACAG
TACAGGATTTGTCTGGAGCACAATGCCCTACCTATTGCCAACTTAAACTGACTTCTTCAATTCCT
TCTCTACTGAGCAATGCCTTCCTTGGACATATCGTCCTATTTAGG
Right flanking sequence: Indices 139944 -- 140443
CGGTTGAGATCTACATTTTAAGTCGTGCATATTTTCATAGATAGACGTTTCTGTCTCGACAACTG
TCACCCATTTGAAAGACTTGAAGCAAAGTGAAGAGTAGCCTGGCAAAGAGCGAGGCCAGAGGTTT
ATGACCAAGACTGTGCTTTAACACACGACATCCCAGTCAGAGGGGGGAATGGTCAAAAGAAACTC
GTTCCATTGAAGATCTTTTACAAAGCACTTTCAAAAATGTGCATGATTTGTGCAATGCAAGTCAA
CTTAGAAAGAGCTCTTCTTTTCCAAAAAAAAACACTTCTCTCTCGAAAACAAACCACTTGCTTGG
GCGGGCATCACTTTGCCTCTTTAACCATCCCTTTACTTACTTGGTTCCTGATCCGCACAGACACA
TAGTTAGGGAGCTTTCAATCAGCAAATCGTTGCTGTGCGTGGTGGTCCTCTCATGTCTGGGCTGC
CCCTCTCTTCTGTTTTTGCATTTCTGTGCAGTGATTAGTGGAAAT
Found at i:160491 original size:12 final size:12
Alignment explanation
Indices: 160474--160498 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
160464 CAGCAAATGA
160474 AAATATGAGTAG
1 AAATATGAGTAG
160486 AAATATGAGTAG
1 AAATATGAGTAG
160498 A
1 A
160499 TAAGTTCCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (12 bp):
AAATATGAGTAG
Left flanking sequence: Indices 159974 -- 160473
CTTCAAGCTGGCTCCTCGCCAGCGTCGTCCACTACGTCAAGATCATCTTCGGTTCTTCTCCGAGA
TGTGGCACTTGAGCATTCCGAAGAGATAGGCTGATGAGCATAGCAGGCAAGAAATACATAGGCCT
TACGCCCACTTCCAAATGTAGGGAATCCGCGAGATACTGGTCACAGGTACACTTAGAGGACTCAC
CTATACGAGAGTAGTCGTGAGGCCGCCGCGACTATGGGAAGTAGGCTGTTCCCTAGTCACTCTCG
ACTCTAGGTTGGGCGGAGAAATGAAACAGTTCACTGTTTTTGCTAGTGAAGCTGTCAGAGATAGG
GCAAGTAGTCGTAGAAACTCCTTGCTTTGTCGCCTTCATAGTAAATAAAATAAGTAGCTTTCCGC
CTGGGCGGTAGTTTCGGAACGGAAGCCAGTAGCGGTAACAGGTCGAGGGAGGGATATCAAAGAGA
AGGTGCAGTTAGTTAGATGAATTGCTTTCGCGTAGCAGCAAATGA
Right flanking sequence: Indices 160499 -- 160998
TAAGTTCCCGAGGTCATTGAAATGGGTGAAGTTCCATTTACTATGGATTTTTCCATTCTCCTCTT
GAAGCACACAAGCGGGAGCCTTTCTTTCTCATTGGCATGTGAACTCTCGAAAAGAAGAAACAAAT
TCTCAGGCATCTCCTTGCTTGCTTTTTCATTGACTGATTCTAGTAGCTGGCCCATTGAATAGAAT
AATAAAGATTAAGCGAAGTGAGCCTCAGTCCTTGCCTGAATACCTAACACAAGTCAAGTTAAGTG
GACGTTCCTGGAATTGGCATCTGAATCCGTCTAGCTCGGCACAAATCAAAAACCTGGTGGCTGGT
GGTTGGAGGTCGAAAGACTATTCCCATAGCACGCCGTGGCATTTCCATTCAATAGCCCAGGAAGC
CATTCCCATCATCTAAGTCAGAGGTACTCTCATAGGTTGGTTGGGCTAGTTACATACTGCCTTCG
ATCCCTTGGCCCTCTGTTGGTTCTGCTACCCGGACCCCAGCCGGG
Found at i:165835 original size:30 final size:32
Alignment explanation
Indices: 165799--165863 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 32
165789 TTACCCGCCT
*
165799 ACCTGGAT-G-GCCTGCCTAGTAGTTCTTTTG
1 ACCTGGATGGCGCCTGCCTAGCAGTTCTTTTG
165829 ACCTGGATGGTCCGCCTGCCTAGCAGTTCTTTTG
1 ACCTGGATGG--CGCCTGCCTAGCAGTTCTTTTG
165863 A
1 A
165864 GAAGAAGTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 8 0.27
31 1 0.03
34 21 0.70
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.34
Consensus pattern (32 bp):
ACCTGGATGGCGCCTGCCTAGCAGTTCTTTTG
Left flanking sequence: Indices 165299 -- 165798
GAATTACCTGAAGTGAAGTGAAGGAATGCCCAGACTTATTTACTTGTCCGAATAGATTGACTCGG
TAGGCCGTAGGAAAAGATAACTCATGCCTACTTTACTTACTTGCCCAAGCCCTACCTACATATTT
TACTAGTAGTTCTTTCGGAGAATTACTCTCTACCTACCTATAGTAGATTGAGTCGAGTAGTGATG
AGCACTTATATACCAGTCCGAGTATTGAATCGAACTAACTCATACATAGGAATTCCTTTCTGGTT
GTCTTGCATTTACTTTTTCTTTTATTTGTCTTGTATTCCTGAAGAGACAGGGAAAGCTTTACCAG
TTGAAAACTGCGGACGGATTAGCCTTAATTAACTTATTAGTAAGTAAGATCTTGGCTTTGTATTG
CCGCTTTTCCTAGATATAGCATAGTAATGGTAATGCGTTTGCGATAAGATTGAATTGAAACTCGA
AGTGAGAGCATGCATTTCCAGCCATACAGAGAGAATTACCCGCCT
Right flanking sequence: Indices 165864 -- 166363
GAAGAAGTGCGCGCACATCTTAATTCCACACACACCCATTTCATGGATTTTCTCTAGCTACCTCA
TTTCAGTAAAGTTAAGCGGTAAGCGGGTCGCCCTTTAAAGCCCCAGATTACCTGGTGGGGCTAGA
GTCTATTGTTCAAAGCTAGCTAGTCGAAGTCTTAACTCCGTCCGTTTGGCTCAGTAAAAAAGTAA
GGGAGAAAATCCCGTATTTATTTTAGTTAGGCCCCCTCTTTCCCTCGATAAAAAGCAACTCAAAA
GACAGTATGTAGACTCGGGGAAAACCTCTACCTAGGACTTGATTGACCTGTTTGAAAAACTTTTT
TTATCGTATGGGAAAGTCACCCAACACTTTCTCTATCCTTATAGAGAAAAGAACAACAGACAACA
AGACCAAATCTCCCTCTTCCTCTTTTTTCCGTCTATGTATAAGGCTCTTTCGAAGCGGAATGTAT
GCTGCTAATGTGCACCACGGCACGGAGTTTAGATGAAATCCCGGT
Found at i:176419 original size:20 final size:20
Alignment explanation
Indices: 176394--176433 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
176384 TAACTGAGCT
*
176394 ATTTCACTACTTTTCTTTTC
1 ATTTCACTACTTTTCCTTTC
176414 ATTTCACTACTTTTCCTTTC
1 ATTTCACTACTTTTCCTTTC
176434 TATTCCATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTCACTACTTTTCCTTTC
Left flanking sequence: Indices 175894 -- 176393
GAAACATGCTCAGGCTTATTCATTTGACAGTTCTCACATGAGGCAGTGTATGAGTTCACATCCTT
TTTTCCAGGCCAGTCCTAAATGCTTTGAAGTCCTTTGTAAGTAGCTCTAATGCCAGAGTGCCTGG
GCTTAATCATGAACCTATCTTAGCAAGGCTCGCCTCCAGTTGCCATGACTTCCCACACTAATCCT
ATTCTTGTATCTAATGATACCTTGCTGCCATGAAAGCTTGCTGTCTGTTGCATTTGATTCCTTGC
ATTTCTTCTTCAACCCAGCTATCCAATCATCCTCTAGGTAACTGTTCAGAATATCATGCATCTAC
TGAGGCACCAGTTAAGAGAAAGCTGCCTAATCTTTCATTTCCACAAAAGAATTCCCTTTTGGCTC
CTCGCGGTTCTCTCTTTAACACCTAGACTACACGATTTCAACAAAAGAAATAAATAAGTATTCCC
TTCCCTACTCTTTTCCTCCCTACCTCGAACAGAGCTAACTGAGCT
Right flanking sequence: Indices 176434 -- 176933
TATTCCATCGCTTGTATGGGCGAGGGCCTTCCTTTTCTCTACTTCACCTCCCGCATGGTATGAAA
TGAAATTTATCAAAAGTTTTTACCTGAATTTGAGGATTTATCAGAGTTAGCACTTAGATCCCCCG
GCCGACAGGTTTATTCATCGAACAGGACGATTTCAGGTGATAAATCTTTTTATAGCGATTCGGGC
TAAAGGGCTGAGGGAACAGGAACCCCCGGAGGGCTAGCGTAGAGCGTTATCGTCAGTAGCATAAA
CCAAGCAAGCAAAGCAAGCAAGGTTCTAGCTGTAGAAGATATGCCAGGTCTAGCCCAAGGAAGGG
GGGGAGTACGGGGGGAGAGGCTATAGGCCGAACCCCCCAGAGGGGGGGGAAACCATGCCCCCTCT
ACACAGTCAAAAAAGAAATTTAGCGATTTTTTGTTTTGGATCGCTAAACCTACTTTTAAACTCCT
TATTTTACCCTCATCTTATCCCCATTCCTTTAGGACCCGCTCATT
Found at i:181745 original size:42 final size:42
Alignment explanation
Indices: 181686--181815 Score: 251
Period size: 42 Copynumber: 3.1 Consensus size: 42
181676 CCTTGATTGA
181686 GGGGAATCCACCTCGACAGGGACAGGGGGAGAATCGGGATCG
1 GGGGAATCCACCTCGACAGGGACAGGGGGAGAATCGGGATCG
181728 GGGGAATCCACCTCGACAGGGACAGGGGGAGAATCGGGATCG
1 GGGGAATCCACCTCGACAGGGACAGGGGGAGAATCGGGATCG
*
181770 GGGGAATCCACCTCGACAGGGACAGGGGGGGAATCGGGATCG
1 GGGGAATCCACCTCGACAGGGACAGGGGGAGAATCGGGATCG
181812 GGGG
1 GGGG
181816 TATCGTCCTC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.25, C:0.21, G:0.45, T:0.09
Consensus pattern (42 bp):
GGGGAATCCACCTCGACAGGGACAGGGGGAGAATCGGGATCG
Left flanking sequence: Indices 181186 -- 181685
GCATAGCATCTGTAAGCCGTCCCCCACTCCCCCTGAAGACTGTCTTCCTCTCCCTCTATCTTAAG
AAATAAAATAGGATGCTAGTTCTCAAACTAGTTTCTCTCTCAGCTCAGTAACTAAAAAATTGAAA
TTCTTGAAATCCCACGGAATTCTCAACCAGAAGTAGCACAGATTTCCTAGTTATTTGTAAAACGG
AGCACATTTGGAATTAAAAGTCGAAGTCCCCCCACGAATTAGAATCAGACTCTCTCCCTGACTCC
GAATCCCCCTCATAACCAGCATCTCTGGGTTTCTTCCCTGGCGGGCCTTCGCCAGAATCTGAATC
CCCATCAGACTCAATGAATTTTCTTTTCCGGGATTCGGCCTCGGGCGGGCCTTCGGAGGTTCCTA
CTTTTCCCGCCCCTTTTTGATCCTGGAGCGGAGGGGATTCTACCTCCATGGGGGTCCCCCCGCGT
TTTTCAATTTGTATAAAATTGGCTTGCTCGCCCCCCCTTGATTGA
Right flanking sequence: Indices 181816 -- 182315
TATCGTCCTCCCCAGAGGCGGAAGAGTAGGATCGACTGCCCCGCAGGGTACCCGCTCGTGCTCCC
GTTCTCGGCCGATCCACCCTCGGATTGATTCTTGGCCGATCCGCTGTTTTCGTGATCGAATGACG
AAATAGATATACGAACTGTATAGGATCATTCGCTGGGATGGGATAAGTGATTCTTTTATAGGATT
CCCATGGGATCGTAGAATCCACTAAGGCTATAATAGGTATTTGTGATCGATCAGCTTCCAGTATG
ACCGAAGACTTTCTATCTGCTTTCAGAATAACCACACAATCAGGTTGTTGGTTCAACCCAAAATT
GATCTTCTTCTTTCTTGAACGGAATTTCTTAGGATTAGCATAAGAATTGGTCAAAAAAGCCCCGA
TCTTCCATTGAGAATCATTGATACAGCTTGCCATTTCTTCCATTATCTCATATAAAAAAATTTGA
TTGGTCTTTAAAAAGAAGGAACGGCCTTTTTTACGAATGAGAGAT
Found at i:190739 original size:35 final size:35
Alignment explanation
Indices: 190679--190746 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
190669 ATAGAATGAA
*
190679 ACAAGGAATCTGGAAATTCAACGAAACCTCATAAT
1 ACAAGGAATCAGGAAATTCAACGAAACCTCATAAT
*
190714 ACAAGGAATCAGTAAA-TCAACCGAAACCTCATA
1 ACAAGGAATCAGGAAATTCAA-CGAAACCTCATA
190747 CATAATTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.47, C:0.22, G:0.13, T:0.18
Consensus pattern (35 bp):
ACAAGGAATCAGGAAATTCAACGAAACCTCATAAT
Left flanking sequence: Indices 190179 -- 190678
TTTCCTATTATTAATTGAATTCCTTCGTTTCCAATACCTAACTTCTGTTTCTATTAGCAGTTTTC
CTTTGTGTTCATCCATTATAGACCACCGTTCTTTCTCTCAGTCTCTTTTCCTGCAGTTTCATTCA
TCTATAAGTTCGATTATCTATCCTAATTATTCTTTAAGGTCAGGACTATCCCTATAGTAAGTAAG
CCCCGAGTATATCTAGAACTTACCAAAGGTACTGTGCACCAAAGGGGATAGTGAAGTAAAGAGTA
TTCCCTGCCTAAGGTTCTGCTTCTTCAAAGATGAGTAGATATTTCGTGAAATCTCGATATGTTGT
ACTTCGTCCCAGTGTCTTCAGTCTTAATGGTGAGATAGGTATCGCATAAAGTTCCTAGTAATTTC
CAATCGAAGAGATTGCCACCCTGCCTCCTTTATGGTTCGCCCCAATCGTTCCATCGGAAGAGGAG
ATGCCCTCGCCCCTTTTTCAGACTGCCGGCAATAGATAGAATGAA
Right flanking sequence: Indices 190747 -- 191246
CATAATTCTTTCTAACTAATTCTATATCTAATAAAGATTCTATCTCAAGTTTTTATTCGAGATAT
AAGAGAAGTTCGTTTTCAGTGTAATAAGTTTGTTTCAAGTTTCTATGTATTAGGAAAGAGTCATG
TTAATCCTACGCAGCCAAATTGTTTGTTATGTCTATGTGCTATTTGCTATAGGAGATAGTTTCCT
AGCCTGATAGATTGATAGTGCGAATGATGAGTTACTGTAGGAGAATCGCTCTAGAATAAGTATTA
GCTATGTGTGTATATGTCTGTCTATTCCTGTGTAAATAAAGAGAGGATATGTAAGTCTCGGTATT
TGGAATAATTGGAGTCATGGCTAAACTGATTAGTGTTTTTCTATTTTCCATCCTGTGATTTTCCT
GGGAATTTGACAGCTTTTGCAACCCTTGAAATCTTATGGGTAAGTACTGTGTTGATAATATGGAT
TTACCTATTTTGTATCCCGCTACTTTGAGATCGCTAGCATTATCT
Found at i:206720 original size:21 final size:21
Alignment explanation
Indices: 206677--206743 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
206667 AATGACTCAA
* *
206677 GTAATCCAAGGGCAGA-GCAAC
1 GTAATCCAACGG-AGAGGCTAC
206698 GTAATCCAACGGAGAGGCTAC
1 GTAATCCAACGGAGAGGCTAC
* *
206719 GTGATCCAACAGA-AGAGCTAC
1 GTAATCCAACGGAGAG-GCTAC
206740 GTAA
1 GTAA
206744 ACAAGGAACA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
20 5 0.13
21 34 0.87
ACGTcount: A:0.37, C:0.22, G:0.27, T:0.13
Consensus pattern (21 bp):
GTAATCCAACGGAGAGGCTAC
Left flanking sequence: Indices 206177 -- 206676
GATAGCAGTTGTTGTAAGCAAACTCGGCTAATGTATCTCTATGCCAATTTAGTAGGCCTGCTCAT
TGATGCTCTTCGGGCCGATTGTATGGGACGTGTTCTGGTGTACAGTGGGAGATGCAAGGATATCG
ATTGAAGTTTTATTTGTTGGCCATGGAGTTGGGAGCATATGATGTAGTCCTAGGAGTAGACTGGA
TGAGGAAATTCCCTATTATTTAAATAAGTCTTTCCGTTGGTTGTAACTAATCACGTACCCGCAGC
AGCTTAGTGTCTTTTACCTAACCATGATTGCAGTAGAGATAAACAACGTTGGGCCTGCCTGCTTG
TTCAGCACCACCCATTCCCATGGGAATATATGGGTTTTTCGGTCCAGTGGGAGGCAAATTTTCCT
TGGAAGGTCATTTTCCCAACCTATAAGTATTGGGCTCCCAAGTAAACAAAGCGAAGGATCAAGTA
ACCAACATGTTGCGGAGCAGCCAAGTAAACCAAGAAATGACTCAA
Right flanking sequence: Indices 206744 -- 207243
ACAAGGAACACATGAACCTGCTAAGGATCCACTCCACCTGCCAAGTGGACCAATCACAATAGCTC
GGGCCAAGAAATTCAATGAAGTAATCCATATGCTGATTCAACAAGTAAAAATAAACTAAAAAAGG
CTTAGCGCCCTCAACTTAACTTACCAATTTAACTATAGGCTGGCTCTTGGTGGAAAGGTGCAATT
TCTGATTCTTTTCTTGGAGCTGCAGATGTAAAGAAGAATTGAATGCCGGCTATTGCTTGATCTTA
TCCCTAGTCTCTAGGCTGGCTGGCCGTAAACAACCAACTACTGCATAAAGAACAGAAGGATAGGG
CTGAAACGTGGCTAGAAATGCGAAAAGCAATCGATTGAATCCAACGTGAGTCAACAGCGGGGTCT
ATTAGTGCGTTACCGAGGGTGGTATCAAAGGCATAAAAGGGTTCGAAAGTCATAAGCCACGGCGC
TAACACGCATCCATTTTCTTGCTAGATGCTGACCAATTGGTCATG
Found at i:209215 original size:30 final size:30
Alignment explanation
Indices: 209179--209240 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
209169 TCCGTTACCG
209179 ATTCTTTCTTTTCATGAATGCTTCGTTCTT
1 ATTCTTTCTTTTCATGAATGCTTCGTTCTT
209209 ATTCTTTCTTTTCATGAATGCTTCGTTCTT
1 ATTCTTTCTTTTCATGAATGCTTCGTTCTT
209239 AT
1 AT
209241 AGGTTTGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.15, C:0.19, G:0.10, T:0.56
Consensus pattern (30 bp):
ATTCTTTCTTTTCATGAATGCTTCGTTCTT
Left flanking sequence: Indices 208679 -- 209178
CTTTATAGGCATATAAAAATGAGTTTTTCAACAACCTTGGCTGCTGCTTAATTGTTGAGGACATA
CTCTCAGAAGCTCGTCTATATTAGTCAAAGATGGAACTACTATTCCTTTTTCTCGCTGCGATCTG
ATACTTGAAAGAAAGAGAGTTCTTGCACAACCCGCCACTCGCTCAATCAAGTCAGGCAGGAATCT
TTGTATAAACCATTTCTTTTCACTGCTAAAGCTTTCCTTTTAGTATCTGAAGGAAGATCGAGTAG
GCAAGAGGGTCTTCCACGCCAGTTTCAGGCGTTCCAGTGGGGGAGGTAAGGAGGAGGGGACATAG
CTTAAAGTGAAAGAATTTAGTGAACTCCAGCAAGCCGTGACAATAGAGTATACAAGGTGCGAAGC
AAAAGAATTCTTTAATCGCTCGCTCGAGGTTCCGGGGGATCCAGTCAATCTCTGTGTTCGTGACA
GAAATTTTCTAAGATCATTACCACCGAAAGTTCAATCCGTTACCG
Right flanking sequence: Indices 209241 -- 209740
AGGTTTGGCCAGGAAACCTCGTGTTTTTTTAGGCGCTTGAGCTCTCTCCATCCAACCTACCATGA
AGCTTTCTGAGCCAGAAAACCACATAAAATCCAGCTAATATCATCGCCTGTTCTAGTCCAAGCAA
TTGCTTCAACTTTCGAGTTTTCCACAAGGGTCTATGTCTCCTTCCAACTGAGCCTACAAGTACCA
TAAGTGCTAACATTCTTCAGCGACATATTATTTATTTTTAAATTCCCAATTAGAAGATTTAGCTT
TTCATCAATAAAAAAAAATAATAACTTTATCAGATCCTTCTCCCTTTATGTAACGATTTAGTTCA
TAAGAAAGCCTTTGTAGAAAATGGAATTTCACGCAACTCCAAAAAAAAGTAGAAGCATGAATGGA
ATTGAAACCTCATTGCGCTGGAGAAGGGGGGCATAGCAGAAGATAGTAATCCCCCACCCAATAGA
AATCTCCCCTAGACAAGAAACAGAAGGGACCAAGAGAAAGCATTG
Found at i:253198 original size:27 final size:27
Alignment explanation
Indices: 253168--253249 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
253158 ACTTCTTCTT
*
253168 ATTGAAAAGAACAATAGG-GGAAGCGGA
1 ATTGAAAAGAACAA-AGGAGGAAGAGGA
**
253195 ATTGAAAAGAAGGAAGGAGGAAGAGGA
1 ATTGAAAAGAACAAAGGAGGAAGAGGA
**
253222 ATTGAAAAGAAGGAAGGAGGAAGAGGA
1 ATTGAAAAGAACAAAGGAGGAAGAGGA
253249 A
1 A
253250 AACCGAAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
26 3 0.06
27 48 0.94
ACGTcount: A:0.51, C:0.02, G:0.38, T:0.09
Consensus pattern (27 bp):
ATTGAAAAGAACAAAGGAGGAAGAGGA
Left flanking sequence: Indices 252668 -- 253167
TATATCCCTTTTTTACTCAATCAAGAAACAAGATCGGACGTGATTCCGGTTCGTCTCCGTTTTAG
TGACACTCTTCCCCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTTTGAATAATGGACTGG
TAACCATTACTCATTTGAAAGTTTCCCACGGTGATCTAATATCTTTTAAAGAAAATTACGCGAGA
ACCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGACATATCAGTTGGAAAAATCATAGGCAA
ATTCCTACCGGTCAGAATCTGGAGAAGAACAAAAACTGAATGGTTCCGCTTACTCACAACTCAGA
GGGGATGCCGCTTACTACTCAAATCCGGGTTTTTGCAAGAGTTGCGTTCTTATATGCAAGAAGAA
GACTTAGAAAGAACAAAGAAGTTTGGATCCGCAAAAGTATGCTTAGGCAGTTCCTTCGCCGAGCA
CAACAGAATGAAGAGGAATTTGTTTCATTTCAAATACTTCTTCTT
Right flanking sequence: Indices 253250 -- 253749
AACCGAAAAAGAGCAATAAGTCCTTTTGTTTACAAGTCTTCTTTATATAGAAATTCGACCTATTG
CTCCGGATCCCCGTTTACTAGGAAGATAAGAATCAAAAGAATCAAAAGGATCAAACTACCTACTC
ATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCAC
ATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCA
AAACATATAAAAAAAGATCGGCCTAGTCGCTCATAGGGACATATCTATCCGGATAGAGGATAGTC
TAGATCAATTTTTAGAAAAATCTCTCTCTATATAGATAGGTATCTCTGTGGATAGAGATAAAGAT
AGGGATCCCTCGAAATATATGGAAAAAGTGAACTTTTTGACTACTACTACTATTTCTTATACTTT
TTCAAGGAAACATCGTTTTTTTGATTTTTACTGAATTGGTCGGAG
Found at i:255394 original size:17 final size:17
Alignment explanation
Indices: 255372--255405 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
255362 GCTATACTCT
255372 TTATATGATATTTTTTG
1 TTATATGATATTTTTTG
255389 TTATATGATATTTTTTG
1 TTATATGATATTTTTTG
255406 AAATAAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (17 bp):
TTATATGATATTTTTTG
Left flanking sequence: Indices 254872 -- 255371
ATCCGTTCCAGTTCATGGATCTTCTTCTTGTTGTAGAACGAGAATTGGATTGATTCCTATAGTTC
TCTATTTGCAAATTCATTACTTAATAACGATCTTATAGGCTTTGTCTCAGGCAGATCTGGAGCGA
CTGGATTGAACAGAAAGTACTCTCACACTATAGAAAAAGTAAAGTCCACTAAAAGTACATGCACT
CTTTTCTTACACTTATAGAGGTTCGAAGAAATGAGTAAAAGGTAGACTAAGTGATCAATCAAGAT
CTTGTCTCAAAACCTACTCTTAGAAGGCTCATTCCAGCAGCCTTAGCACAAGCAAGTAGACCGTC
ACAAAAGAGAATGAAATCAAAACCGGAGAATGAAATGCTTTACTTATAATACTAAGACAACCAGG
CACTTCACTTCAGGCTTTGATCTGCGACTTACAGAACTGTTTTGCTCTCTTTGGTGAAAGGCTCC
TGGAAGAAAGGCTCGACAGGTTGGAACATAAACACGCTATACTCT
Right flanking sequence: Indices 255406 -- 255905
AAATAAGTAAGGGGTAAGACAAGCTAAGCGAGTTGGCTATTCATTTCTATAAGCAGGGAGTGATG
CGAGAGATAGCATCATCTATTAGGAAAAAGCAACTATTGTTCTTTATTTAGGAGCTAGTGTTAAT
TTACTTCCTACTTCTGTTTATGAAAAATAGGGATTAGTGGCATTAAAAACCACTGAGGTGATCCT
CATAATTATCATTTATAAGTTTAACTACACCCTTATCCAGAAGGAAAGCTAATAGCAAAGTACCT
ATATTATAGGGACTCCTTTCGAGTTTATCCTTTTCATCTATATTATTGGCAGGTATCTTATCCTG
ATTCATATTATTTGGTACGACTTTCTCTTTATCAGAAGATGAATCAATCTTATCTGAAGAATCAT
TCATCTTTGCTGATGAAGCTGCCTTCCGCTTTGATGAGGCAGCCTTCTTTGAAGAATAATTTTGA
CTCTTCTGAGTTTCATCCATAGCAGCTGCTGACTTTTCCTGGTTT
Found at i:292027 original size:25 final size:26
Alignment explanation
Indices: 291990--292045 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
291980 TTTACACCGA
* * * *
291990 TGTATCTTCTGCTAGTTAATTCCGTG
1 TGTATCTTATGCTAGTAAATGCCATG
292016 TGTA-CTTATGCTAGTAAATGCCATG
1 TGTATCTTATGCTAGTAAATGCCATG
292041 TGTAT
1 TGTAT
292046 TTGAATAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (26 bp):
TGTATCTTATGCTAGTAAATGCCATG
Left flanking sequence: Indices 291490 -- 291989
TACGGACCATTCCAAGGGCGTAGGGAATAGAATGATCACCCCCCATCCATACCCTATGGGTACCG
AGTTACTTATTGGCTAAATTCCTTTAGGCATTAGATTGGAAAAACGCCCTCGGTGAACATCAAGA
AAGAGGGACCCAGTGAGCCAGTGAAGCTTCGGCTTTTCTCGATAAAAGGTCGCAATGATCTTACG
ATCTGAGCCATCAGGCTGGAATGAGATGAGAACACGGCGCATCTTTGTAGCTGATCCTCCTCACT
CAGACTTGGTATACCTAAAATCTTTACTTGGTAACTTAGACCTTTATTATCTTGCCAAAATTGAT
TTAGTTCGTTGTTTGCGCACATCCTCCACCGCGGGCCTCGGAAGCCTCGTGGCCAGTAGGCTATC
ACAAATTCTCATAGAGAAATGATATGATTTCAGTATGAAATACGAAGAACTTAAATCATGGGATG
TTAATCAACAGTGATTGATCTCAGGTATATTATCATTTACACCGA
Right flanking sequence: Indices 292046 -- 292545
TTGAATAGAGTAATTCATTACCGGGATATGGTTCTCCCGACTCCTATGATCTACCCAATATGCTC
ACAGATCACTTCAACCAGAGTTAGCCGGAATTAGCTCCCAATTCTAGTCCGGCTTCAACTCCAAT
CAGCCGTTCAACTTAAAGTAGTGTTATTTTTCTATCGTCTCTTCGGTCTATCCCTCTCACCTACG
GTTTCTTCTTCTTTTCTCTAGTTTTCTTAGGTGTCTCCAGCGGAGTTTTCTTCTCCCTAGTTTTC
TTTGGTGTTTCCTGTGGTCTCGTCATTGGAATTAACCTATCATTTCCCTCGGATTGGGGGTTGTT
ATGACCCTCTATGCCCGTTTCATATTTCTTTAATTTGTCTACTAGTTCCGCGTTCTCCGCGATAA
TATCGCTTAATACCTTTTGCGCGGATGTGTCCAGCATCTTAGAATCTTCTTCAATATGAATGGGT
GCAGTTGCTACTAAGGTACCTTTTTCGTCCACAATTAATTGTCTT
Found at i:305571 original size:9 final size:9
Alignment explanation
Indices: 305557--305587 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
305547 ATTTTGTCTA
305557 TCTTTTCTT
1 TCTTTTCTT
305566 TCTTTT-TT
1 TCTTTTCTT
305574 TCTTTTCTT
1 TCTTTTCTT
305583 TCTTT
1 TCTTT
305588 CTTGGTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TCTTTTCTT
Left flanking sequence: Indices 305057 -- 305556
AGTTAGTCCTATTTGAAGGTAAGAAGTTCGGGTAGTAAGGGCTAGGTTTATATATAGGCTATATT
TTTTATAAACATATGGTCTTGCTCATTTCCCATCAAGGAATGGAGATTGGGTTGGTGTTTGGAAG
GGATTCAGTAAACTGACCTTTTGGCCAGCAAGCAGAAAAAGGACTGACGTCTTGGGGCGCGCTAG
CGCGCGTACTCTTCTTCTGCGAGACTCCATCCAAATCCACCACTTACTCGTTGGTTGGTGTTCCA
TTCTGTTATCTTATACTATGCTGCCTTCTTCAATTCCATTCTTCGTCTCCCTAGTCGAAGTCTTC
TTGCTGGCCCAACCCAACATGCATTTTAGAGTGCCGTGCCAGGGCAATAGGCGCTCCGCAGTCAC
GCATGATCACCAGAGCCTTTCTTGGCTATGTAAATATAGGGCCGGAATAAGTGCAAGATCCTCAA
CAAAATGGATTAAGGTGGGCTTCGGATTATTAATAATTTTGTCTA
Right flanking sequence: Indices 305588 -- 306087
CTTGGTTTTGGATCAGCCGCTATTATCGCAATATCCCTCCTTTTAGGGATAAAGCTATCAATGGT
GAATCGACGAGCATTCGCTTTTTTTTTAAGAGCAAATTTTTCTTTGAATGGAAGAAAAGTAATGA
AACCTGCGATGGCTACTGAATAACCTCCTTTGATTTTATTAATTTTAAACCCTTTTACCTTTTTC
TTCGTTCGCCAAATCTTCTTCAGTTCTATCCAAGCTCGGTTTTGTCTGAATCTTTGTGGAAGAAG
AAGCGGTTCGCCAGCCGCTACATCCAGGGATCCCACAAAATCATTAAACCTGGCGGCTGCTCGCT
CTTTGATTAGTGATTCACCGGCCACTAGATCGATGAAGAATCTCTCAAAAATCCGCTTTTTGATC
AGTGATTCACCAGCCACTACATTCTTGGATCCCACCTTATTCTCAAACCTGGTGGCTCGCTTGAT
TGGCAGTCCTGTAAGCTCATCTTGCATACAAATTATGGGGGTACC
Found at i:305596 original size:17 final size:17
Alignment explanation
Indices: 305558--305596 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
305548 TTTTGTCTAT
* *
305558 CTTTTCTTTCTTTTTTT
1 CTTTTCTTTCTTTCTTG
305575 CTTTTCTTTCTTTCTTG
1 CTTTTCTTTCTTTCTTG
*
305592 GTTTT
1 CTTTT
305597 GGATCAGCCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.18, G:0.05, T:0.77
Consensus pattern (17 bp):
CTTTTCTTTCTTTCTTG
Left flanking sequence: Indices 305058 -- 305557
GTTAGTCCTATTTGAAGGTAAGAAGTTCGGGTAGTAAGGGCTAGGTTTATATATAGGCTATATTT
TTTATAAACATATGGTCTTGCTCATTTCCCATCAAGGAATGGAGATTGGGTTGGTGTTTGGAAGG
GATTCAGTAAACTGACCTTTTGGCCAGCAAGCAGAAAAAGGACTGACGTCTTGGGGCGCGCTAGC
GCGCGTACTCTTCTTCTGCGAGACTCCATCCAAATCCACCACTTACTCGTTGGTTGGTGTTCCAT
TCTGTTATCTTATACTATGCTGCCTTCTTCAATTCCATTCTTCGTCTCCCTAGTCGAAGTCTTCT
TGCTGGCCCAACCCAACATGCATTTTAGAGTGCCGTGCCAGGGCAATAGGCGCTCCGCAGTCACG
CATGATCACCAGAGCCTTTCTTGGCTATGTAAATATAGGGCCGGAATAAGTGCAAGATCCTCAAC
AAAATGGATTAAGGTGGGCTTCGGATTATTAATAATTTTGTCTAT
Right flanking sequence: Indices 305597 -- 306096
GGATCAGCCGCTATTATCGCAATATCCCTCCTTTTAGGGATAAAGCTATCAATGGTGAATCGACG
AGCATTCGCTTTTTTTTTAAGAGCAAATTTTTCTTTGAATGGAAGAAAAGTAATGAAACCTGCGA
TGGCTACTGAATAACCTCCTTTGATTTTATTAATTTTAAACCCTTTTACCTTTTTCTTCGTTCGC
CAAATCTTCTTCAGTTCTATCCAAGCTCGGTTTTGTCTGAATCTTTGTGGAAGAAGAAGCGGTTC
GCCAGCCGCTACATCCAGGGATCCCACAAAATCATTAAACCTGGCGGCTGCTCGCTCTTTGATTA
GTGATTCACCGGCCACTAGATCGATGAAGAATCTCTCAAAAATCCGCTTTTTGATCAGTGATTCA
CCAGCCACTACATTCTTGGATCCCACCTTATTCTCAAACCTGGTGGCTCGCTTGATTGGCAGTCC
TGTAAGCTCATCTTGCATACAAATTATGGGGGTACCAAGGCCTGC
Found at i:320138 original size:33 final size:33
Alignment explanation
Indices: 320096--320161 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
320086 TCCATTCAGC
320096 TTTGAAATCGGAGACAAGGAAAACTTCATAGAA
1 TTTGAAATCGGAGACAAGGAAAACTTCATAGAA
320129 TTTGAAATCGGAGACAAGGAAAACTTCATAGAA
1 TTTGAAATCGGAGACAAGGAAAACTTCATAGAA
320162 GCGCCGCGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.12, G:0.21, T:0.21
Consensus pattern (33 bp):
TTTGAAATCGGAGACAAGGAAAACTTCATAGAA
Left flanking sequence: Indices 319596 -- 320095
GTTTCCGAATGGGGCTGAAACAGAAGTCTTAGTAGTCGGCAACATTGAATACCTTAGAATGCCCC
CAGAAAGAATGGGAAAGAAAGGAAAGAAGAGGATTCCTGGGAAGGATAGAGTATATCAGCAGGTT
CATCGCACAGCTCACTCCCTTCAGGGAAAAAGGATTTGAGTGGAAGGTTGAGCGCCCCTTAACGT
TTAGAAGTATCCTTTTTTCAACGGTTAGAAACCTTTCTATTCTAAGACGGCTAAGTCGAGGGCAG
ACACAACAGGTCACGAAGAGCTAGAGGATATAGAATTCCTATTTACCGGGAAGAAAGAAAAGCGG
AAGGAAACATCGGCTCTTCCGAGATCTTATGTAAGGAATACTAGAAAAAGTAGAGCTAAAAGATC
TAAAAAACTCAACAAGAAATGTCTTTCCCGCGGAAGACTCTAACTCCTCATAGCATTATGCTAAT
CCGAATATCGAATGATGCTTCGACAGATTCAGTCATCCATTCAGC
Right flanking sequence: Indices 320162 -- 320661
GCGCCGCGGATCAATATAGAGATGCGAGCCAATATCCTTTTCCTGATGGACTCTGAAGTACTCGT
CTTTTGCACAAGGCCTCGTGTCAAATAACATCCAACCACGTCCACGTCCTCCTACCTCGCCCATT
TGCTGAGATCATCTACATTTTGCTTCGTGTCGAGCTCCAATCGGCCCAAACGTTTTCCTTCGGGA
GGGCATAAAATTGCTGCTTTCTTTCTGTAGGGAGGCTGGCTCTTGGTGGGTCGTCTACTGCAAAC
CCGATAAACTATCCACAAGGGTCCCGGTGCACAAAGGACATTCTATCCGCATTTGGGAGGACCGT
CTTCACCCGTCCATTCACTCCTTTCGACCTGTTGCTCGGGAAGGTACCGAGCCTACAGGCCACAT
CTTTAATTGTATTCTTTTTCGAGGTCATCCTCTTCAGCCTGTGTTAGTAGTGCTAGTTTTGAGTT
TCTTTTTAGTACCTTCCCTACATAGGGGTAGTATAGATATCCTTA
Found at i:321231 original size:21 final size:21
Alignment explanation
Indices: 321207--321258 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
321197 CATCTCCAGG
321207 AGTATCATCAAAGTGAAAAGA
1 AGTATCATCAAAGTGAAAAGA
*
321228 AGTATCATCAAAGTGAAAAGG
1 AGTATCATCAAAGTGAAAAGA
321249 AGTATCATCA
1 AGTATCATCA
321259 CGGGCTGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (21 bp):
AGTATCATCAAAGTGAAAAGA
Left flanking sequence: Indices 320707 -- 321206
TCTTTACTGCACAAGCTAATAAGCTTGAAAGAAAGTGCTTTTATTTGAGTTGAAATGAAAGAAGA
AATCGTCTATCTAGACAGAGTATGTGTCTTATTCGGTCCATGCTAGCCCTTCTAGGCCCTTTGAT
CTATCTTACTATAGAAAAGGGTTTTAGGACGAGCAGAGCAAGTCGCGTTTACAGCCTGCAGTTCT
TATCCCTCTAGTATTCCAATAATCTCCCTTCCTCCAATATGTCACTAGTATTTAAGTATGCGGCT
CGTATTAGTATGCCAGGCGTTCGAGTGACACAGGAGGTGCTTAGGGCAAGGTGGATTTTTCCTGA
GATCCGAAAAGCCGTATCATGGTTGTTAATCAGGATATATACTAATAACTACACAGAAACCAATC
ATGATACCTAAACTAACACCTACTCGCCATTTTCTATCAATATTGGCCATTGCTATTTCTATTGC
TGGATCCAGCTGAGGCTTCTCATTTAAAGGATTATCATCTCCAGG
Right flanking sequence: Indices 321259 -- 321758
CGGGCTGACATCACTATGTCTGATATATCTTTTGTTTCCTGGAGTGTTATCTTTGTATATCCAGG
CACTATAGCTTTGTCATTGAAAATGAAATCACACGATATAGGAAGCGGATCTTCTGGAGGAATAT
CAATTCCGCAAGGTGTAAACTTCCACCATACAGTAGTGTAAAACCCTACTTTGACAAGTGCATAA
ATATTACCATATATAAACGAGATTCCATCCTGCCCCAGGCGTACCGTACCTGAGACAACCCTTTT
CTCACCCTAGAATTGCATTTCCGCTTCAGCTTCCTTACATCCTTATTTTTCTGGATCCCTTCTCT
TCTAGGCAAGGATCCTTTCTCCTCAGGGTTTTCCTATACCTATAGTATAGAAAGAAAAGAATCTT
AGACGGCTTTCATTAGATTATGCTTCCTTGCCCGTGTGGAACATGTGTGAGCATTATATTTTTCC
AACAAGTCCTCCGACTGGAGGAAGTGTTATATGAGGACTTCGAGA
Found at i:331713 original size:13 final size:14
Alignment explanation
Indices: 331695--331727 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
331685 TTGATATCCC
*
331695 GAAATCCT-AATTA
1 GAAATCCTAAATCA
331708 GAAATCCTAAATCA
1 GAAATCCTAAATCA
331722 GAAATC
1 GAAATC
331728 TAGAAACAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.24
Consensus pattern (14 bp):
GAAATCCTAAATCA
Left flanking sequence: Indices 331195 -- 331694
AAGGGAAAGCAAGGAAAGATAGCAGTTAAGGAAGGAAGGATAGGCTTAAGCAGATAGGTAGGTAG
GTTCAAAGAATGGGTTAATAAAGACGAAGGATTAGCAGAAGCAAGGTAGGGAAAAGATAAGTTAG
AAGCTGAAGGAAGGTAGGTAAAAGATAGGTCACGGATAGCCAGCACTGGTTTCCTGTAGAGGAAG
ACTCTCTTCCCCGAAGACTGTCTTCCTCTGCCCCTGGACCTAGATTCTTCCATTCCCCGGGACCT
AGTTCCGGATGAAGAAAAGAGAACAGCAACAACCAGTTCCGCTCCAGACCCAGGTGATGTGTCTT
CTACAAATAGAGAAGTCCATGTTCCCTAAACCGTATACCCAATCTCCTTGTTGAGTATGCTAGGG
TGGTAGTCATTGTCACTCGGGGAAAGCTCCACCCTCGGTGCCCGCCTCGGGATGTCGCTCGGGCA
GGCCCCTGATCCAAGTAAAGTATCCTAACCTGGAATTGATATCCC
Right flanking sequence: Indices 331728 -- 332227
TAGAAACAGGAAATCGACATCCTCATACCGACCACCCTTTCCTGTACCAGGCCATCCCCTATTCG
TTCCTGCTCAACCAGCCCCCTCCGTTCCCGATACCCAGCCAGGGCATCACTCACTAAAGAGTAGA
ACTGAAAGAAGAAGTCTTTCTTTTTGTTTGAGTTGCCCATCAGATCAACTGTATGAGCTGAAGGA
TTCGATTGAAGAGCTGACCTCTTTCATATGATTCCCAAAGCAGATTTCAGAAGGTACCTGATCTA
GTATCAATGATGCTTGTTGAAGGGCAGGCTCGCCCAAGAGCTAGCTTTGAAAGGGGGAACGATTA
GTCACTGGCTTTCTCTCCTTTTGAGATTGAGACTTAGCTGCTTACAGCACAGTCCCTTCGCCACC
ACACAGGCGGATTGATCTTACCTAATAGGGCCGAGAGTAGAAGTATTAATTTTCGATGCGAGAGT
AGAGGTATTCCCCTTTGCCCCATCCCTACTACCTGCTTTCGAAAG
Found at i:341399 original size:24 final size:24
Alignment explanation
Indices: 341353--341399 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
341343 GATGGAATGA
* *
341353 CATTTGATTTGGTTTTTCTGATTC
1 CATTTGATTTAGTTTATCTGATTC
341377 CATTTGATTTCAGTTTATC-GATT
1 CATTTGATTT-AGTTTATCTGATT
341400 TTCTTCAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.17, C:0.13, G:0.15, T:0.55
Consensus pattern (24 bp):
CATTTGATTTAGTTTATCTGATTC
Left flanking sequence: Indices 340853 -- 341352
GGGTAACGGTCGAAACAGCCGAGTAGCGACAGGAAGCTTTCTATGTATTCAAAAGGTTCTCTTCT
CTTAGTGGCGTGTCACTCAATCTTGGTTGTCTTTTTTGGAGTGTACTGGTCGATCGTCTTCGAAG
CTTGCTTGGTCAGCTTCTCTTAACCGCTTATTTAACCTTCTTTGCTAGGATATTCCTCTTCTTGC
CTAGGATACTTCTCCTGCTTGTAGAATTTTTCTTTCTTGAAAGTTTATGCCTTGCATGAGCACTG
TAGCCCGCCTCCCTCATGGGTACTCGTTATGTGGGTCTTCTAGCTCTTAAGTGCCCATCTCTCAG
ACAGAGGAATTTAGAACGTGGGAAAGGAAGTACACGTACTCCAAGAAGTTCTTCGTTTCGGAGCC
AATCAGTTGATGATCAGAAAGTTTAAGATTACTTGCATTTTGACATGAGTGTGTGAAAATTTGTC
CATCTAATGCATATTCCTATCTTTTGTCGTCAATTGATGGAATGA
Right flanking sequence: Indices 341400 -- 341899
TTCTTCAACAGAATCAATTCCATTGAATTGATGTTTAGAGATTTGACAAATGAAAGATAAGTTCA
ATCTATCTTTTTACTTCAAAGCAAGGCTATCCATTTAGCTTGTGATGATTGTTAGAATACTGGAA
ATCTTAACCGGTAGGAAAGTGCCTTAGCCAATTATGTCTATACGTAAGATTTCATAACGAGGTGT
TTTAACGTAAGGCAGAAGGCGCGCAGCGGTTGAAAAACTTCTTTGTGCACTAGTTTCCAATGGAG
CTTGAGGAGTCCAACTTGAACCTTTAGCTCTATGGCCAGATCGAGTTCGATACTGTTTTGACAAG
ATGAACTGCACCTATACACTCAGTGACATACACTTTATGGAGCAAGGGTATGAAATTTATTGTTT
ATATGCATGCTTGCCAATTTGGTAGATTAGGTCAAGCTTGTGAAGGGAGGGCTAAGAGGAGGATC
TTTGCCATTGGTAATTCGACAGGTCTTTCTTTCCCTACTTGCTAG
Found at i:345158 original size:23 final size:23
Alignment explanation
Indices: 345132--345175 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
345122 ACGATGTGGG
345132 ATTAGATATGGATCTTAGAAAAT
1 ATTAGATATGGATCTTAGAAAAT
* *
345155 ATTATATATGGATCTTCGAAA
1 ATTAGATATGGATCTTAGAAA
345176 TAAGACTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (23 bp):
ATTAGATATGGATCTTAGAAAAT
Left flanking sequence: Indices 344632 -- 345131
GGTCCCTACTGCTTATGGGACTGTGATCGAATCAGTTCAACTGGTAGATGAAATGGGAATTTATA
TGGAAGCGCACGAGGGGAAGCAAAGACGGGGCGAAGGGATTACGGACCGGGCTTTCGATACGCTG
GATTTGATACCTTCTGATATTGCACTAGAAATGGAATAGAGGAGGAAGAGGCTAGGTAGGCTGTA
GTAGCGCATGCTGGAAAGCTAGTCAAGGTTGTTCGACAAAGCACATTAGCAAAGGTAGTTATTTC
AGTAACTTTATCTGGTTTCAATCCTTCCGTTACGAGATATCCTTTCGTACAACGGTAAGGTTTTC
CTCGGCTACCCCTATGCCCATATGGGGCAAACAATGCAATAGCTTCGGTCCATCTTTTACCTTGG
GAAAAAAACTGATTGGAACCGAAAATCCATGTTGAAGAGGAGAGGTTATCGAGCACAAGAGTGAA
GAGTAGAGGGCGCATGGGATGTGCGCTCGCTATGAACGATGTGGG
Right flanking sequence: Indices 345176 -- 345675
TAAGACTCTTTCTACTTTCGATATGTTTCTTATAGATCAAAAGATTGGTAAGAACCTCATGTTGA
TGGGATACTATGCTCTTTTGACCACCATCATCCACGCTATTGAAGCTGGGGTACAGGGTGTGAGT
GAAGAGAAGCCTCTTATTTATTAGTTGAGCCGTGCGTGTACCAGTATTCGAACGCCTATCTTATA
ACTTTATTTATTTTATCAAGTGATGGATGTGGTGGGATATATCCTTGGTTTGATTATCCATTCCG
CGAGTCTCGAAGTAGAGCTGGTCTTTTATTGATAGTAAGTACTAAAATGAAAACCCACCCACCTC
ATCACATCCTGTTGGAATGGTCCTAGGAAAGACTACGTACGAAAAATCATTCTCACAGCCAACTT
TCCTTCTTCTGAGCAAATAAATGTAGTATTTAGTCCAACCAATCATTGGTGAATCTCTTGTATGT
CTTTCGTGAAAAGTGGAGTATTTGTGCCCAAGATCTTTCTATCCC
Found at i:350474 original size:20 final size:20
Alignment explanation
Indices: 350441--350501 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
350431 AAGAAACTAC
350441 AAACAATAAATAAAATGAAT
1 AAACAATAAATAAAATGAAT
350461 AAAC-ATAAATTAAAATGAAT
1 AAACAATAAA-TAAAATGAAT
350481 -AACAATAAATAAAATGAAT
1 AAACAATAAATAAAATGAAT
350500 AA
1 AA
350502 CCCTTCTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
19 18 0.47
20 20 0.53
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (20 bp):
AAACAATAAATAAAATGAAT
Left flanking sequence: Indices 349941 -- 350440
GGAATAGTTCTAGCAAACTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACA
TTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCTGGATTTTACTATTGGGTGG
GTAAAATCTTTGGTCGGACATATCCTGAAACTTTAGGCCAAATCCATTTTTGGATCACTTTTTTC
GGGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCC
AGATTATCCAGATGCTTACGCCGGATGGAATGCTCTGAGCAGTTTCGGTTCTTATATATCCGTAG
TTGGGATTCGTCGTTTCTTCGTAGTTGTCGCAATCACTTCAAGCAGTGGAAAGAACAAAAGATGT
GCGGAAAGTCCTTGGGCTGTTGAACAGAATCCAACCACACTAGAATGGTTGGTACAAAGCCCTCC
AGCCTTTCATACTTTTGGAGAACTTCCAGCTATCAAAGAAACTAC
Right flanking sequence: Indices 350502 -- 351001
CCCTTCTTTGGTTCTCTATGGGCATCCAACGGAAAGTGATATCATGTTTATGCTTTCTTTTCTTC
GTCGTCTAATAGCTCTACCTCCTCAACTAGATCTGTTGCGGAAAGCGCTCCGCCTGAGTACACGG
AATTATTAATAAAAATTTGTGCAGAATGCACTAGATTGGTGGTTCAGGCAGGTAGAGAAAACCAC
CACAATGGGACATGCCTGACCTTTTTCGAACTGTAATTACGGACGACCAGGGTATGGGGGTAATC
CCGAGCTTTCTCAGGGAATACGTACTATGATCTCATGTTACATGGAGATCATAGTTGGGTATTCC
GAGATATTCTCGCTTGGATTGATTTAATCAACTAAGCCCCCCAAGTATGAAGGGGCGGGTGTAAA
GATATAGTCTTAACCGCTTTCTTTCCTTTCATAACGGAGGGCTCACATTAAACAAATCGGGCCAC
CAGAATACTTCTGTGCTGGAGTGAAGAAGCCACTTCAGTACAGTA
Found at i:350502 original size:19 final size:19
Alignment explanation
Indices: 350442--350502 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
350432 AGAAACTACA
350442 AACAATAAATAAAATGAAT
1 AACAATAAATAAAATGAAT
350461 AA-ACATAAATTAAAATGAAT
1 AACA-ATAAA-TAAAATGAAT
350481 AACAATAAATAAAATGAAT
1 AACAATAAATAAAATGAAT
350500 AAC
1 AAC
350503 CCTTCTTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
18 1 0.03
19 20 0.51
20 17 0.44
21 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.21
Consensus pattern (19 bp):
AACAATAAATAAAATGAAT
Left flanking sequence: Indices 349942 -- 350441
GAATAGTTCTAGCAAACTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACAT
TTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCTGGATTTTACTATTGGGTGGG
TAAAATCTTTGGTCGGACATATCCTGAAACTTTAGGCCAAATCCATTTTTGGATCACTTTTTTCG
GGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCA
GATTATCCAGATGCTTACGCCGGATGGAATGCTCTGAGCAGTTTCGGTTCTTATATATCCGTAGT
TGGGATTCGTCGTTTCTTCGTAGTTGTCGCAATCACTTCAAGCAGTGGAAAGAACAAAAGATGTG
CGGAAAGTCCTTGGGCTGTTGAACAGAATCCAACCACACTAGAATGGTTGGTACAAAGCCCTCCA
GCCTTTCATACTTTTGGAGAACTTCCAGCTATCAAAGAAACTACA
Right flanking sequence: Indices 350503 -- 351002
CCTTCTTTGGTTCTCTATGGGCATCCAACGGAAAGTGATATCATGTTTATGCTTTCTTTTCTTCG
TCGTCTAATAGCTCTACCTCCTCAACTAGATCTGTTGCGGAAAGCGCTCCGCCTGAGTACACGGA
ATTATTAATAAAAATTTGTGCAGAATGCACTAGATTGGTGGTTCAGGCAGGTAGAGAAAACCACC
ACAATGGGACATGCCTGACCTTTTTCGAACTGTAATTACGGACGACCAGGGTATGGGGGTAATCC
CGAGCTTTCTCAGGGAATACGTACTATGATCTCATGTTACATGGAGATCATAGTTGGGTATTCCG
AGATATTCTCGCTTGGATTGATTTAATCAACTAAGCCCCCCAAGTATGAAGGGGCGGGTGTAAAG
ATATAGTCTTAACCGCTTTCTTTCCTTTCATAACGGAGGGCTCACATTAAACAAATCGGGCCACC
AGAATACTTCTGTGCTGGAGTGAAGAAGCCACTTCAGTACAGTAC
Found at i:415872 original size:16 final size:16
Alignment explanation
Indices: 415847--415884 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
415837 AGTGCAAGCC
415847 TAAA-AGTCAGCTATT
1 TAAATAGTCAGCTATT
*
415862 TAAATAGTCAGGTATT
1 TAAATAGTCAGCTATT
*
415878 GAAATAG
1 TAAATAG
415885 CATAGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (16 bp):
TAAATAGTCAGCTATT
Left flanking sequence: Indices 415347 -- 415846
GAAAAAGGACAGCAGGTTAGCCCCGGGCTTAAGCCATTTGAACGAAGGAATGTTGAAGGCAGGCG
TGTAGCTGGGTGAAAAGGTTTGGCTGTTAGGAAAGTAAGTTCAAGCAGAAAGAATGGAAAGAAAA
ACAATTGGTTTAGAATAAGTAATTTAGAAAGTAGTAGTTGACTTTCTTAAGCAAGTAGTGGGGCA
AGCAAGATAAAGTAGTAACGAATATAGGAAGAAGGGTTACACAGCTTTCTTTCCTATTAGTAACC
GCTACGCGCCTTGCTACCAAGTGCCAGTAGTGTAGGAGATCCCTGCAATAAGAGTAGTGAGTGAA
ATCGGTTGCTTGTTGCTAGCGGGAAGGAAGGAAAGGTCAGATTACCAAAAAAGCCAGCTGCATGT
ATACTCGTAGGAAAGACAAGATCAGATAGAACCGATAGAAAGTAAGAAGGGTAAGCAATCCTCTG
ATTCTATTTTTATAGTCGTCCGTCATTCGATCGATAGTGCAAGCC
Right flanking sequence: Indices 415885 -- 416384
CATAGTATTAAAAGGCTACCAAACTTCTATAATAGTACCGAAGGCCTTTTCTTGTCTCACCGGAT
ATGAAATGCAACCTTCTACTAATAGTATGGGGGATAATATATTTTCCTCTAATTAGTACCCTAAG
GAAACTCTTTTTTTCTGCACGAACGATATAGAACTACTATCTATGTATTTGGTTACCTATGACCT
ATTACCAACTTAACTATGTTGGTCTTTCCCATTGAATGTCAGTCTTGAAACATTGCCTTGTATAT
TCAGAACAGTAATGAAATGTCTCTGAATCTGGTATCCAAACGTTGTAAGTCGTACCCGGTTATAC
GTAGTATCACCCAACAACACGTCAAGGATGGTATCTCTTGAATAGGCGTATGAAAGATTTCTTGC
TTCTTTCGAGGAACCGGACACTGGCGCTTGGGTAAGGCGTTCTCGCAGCAAAATCCTTCGTGAGG
TTTATCTACTGCATCAAAACAAAAAACCAATCCAAGGCAGAAAAG
Found at i:430361 original size:22 final size:22
Alignment explanation
Indices: 430333--430376 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
430323 AATGTGTTGC
430333 ATGGCAAGTAGGAGATAAACCG
1 ATGGCAAGTAGGAGATAAACCG
430355 ATGGCAAGTAGGAGATAAACCG
1 ATGGCAAGTAGGAGATAAACCG
430377 TCAGAAGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.32, T:0.14
Consensus pattern (22 bp):
ATGGCAAGTAGGAGATAAACCG
Left flanking sequence: Indices 429833 -- 430332
AGAAGGCCATGGCTAGTGCACCGGTATTGGCAATGCCGGACTTTACAAAACCTTTTTAGCTGGAA
ACTTATGCGTCAGAGAAGGGAATCGGAGCTGTTTTGATGCAGGGTCGGATACCTATAGCTTACCT
CAGTAAAACATTAGGGCCTAAGAGCCTTGGGTTATCTACCTATGAGAAGGACTTTCTTGCTTTAC
TCGGGGCAGTCCAAAAATGGAGACACTACATCTGCGGTGCCCCCTTTTTCATAAGAACCCATCAT
GAGAGCCGTCAGTACTTGCTTTAACAGAGATTGACCCATACTCTCACACACAAAAGTTTGTGCAA
ATTGCTGGGCCTAGACTACACAATTCAATATAAGAAAGGAGCTGAAAACAGCTGATGCGGACAGA
AGTGGAAATAGAGAGGGGAGAAGTGAAAGCAGTAACTGAGTTGCTTCCTCAGTGGGTGCAGGAGT
TCAAAGGCAGCTATCAAAGTGATGTGTAGGCAAAAAATGTGTTGC
Right flanking sequence: Indices 430377 -- 430876
TCAGAAGGATGACTTTTGATCATTTCCAGCTTCGACTGAGTCCAAACGAAGAGTCCTCGTAAGTT
AAACTAGAGGAAAGGAGAATGGATGGGGCGAGATTCACCATTTTTTTCTCGTTATTAACGTAACC
CACGGGAACAGGGGCTTCATTGCTGGTACTCTTTTTTAGCTATTATAGGAAAACTTATTTTTTGA
ATAGGCCCTCTCTTTTTTGATAGGAAGGACCTATTGATTGAAGCACTTCTTTCAACACGTAGGAG
AACATACCTACCTTTACGTGCGCTTTGATAAGTAGGTCGACAAAGTATTTAAATAAGACATCCAC
TGGTAAGGACAAACGAAAGGAGATAGATACAGGGAACAGTCATAAACCAAGCACCTCAGATTCCA
ATAATCTAGTAAAAGGAAAAGATAGATTCCCTCTGGATTCTTGTCAAACATTTTTCAAACAAAAA
GCTACTTGAAATAGTATAGCCCAAATTAAAGGTATGTTTCCGGTC
Found at i:448466 original size:20 final size:20
Alignment explanation
Indices: 448441--448479 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
448431 ATTTTATAGG
*
448441 CATGATAACTCAACTCTAAA
1 CATGATAACCCAACTCTAAA
448461 CATGATAACCCAACTCTAA
1 CATGATAACCCAACTCTAA
448480 GATAGTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (20 bp):
CATGATAACCCAACTCTAAA
Left flanking sequence: Indices 447941 -- 448440
AAAATGGCATAACCAAATGATTGTTTAGCCAATGAAGGATTTCTAGCCACGGAATGAATCGAAGA
ACTGAGGACGTTTCCAATTCCGACAGCAGCTCCGGCTAAAGCAATTGTAGCAGCTCCGGCACCTA
TTGATTTAGCTCCTTCTAACATGTCGAGACTTGACATTGTTGTTTTACGTTTTTTATTTTTCTTC
TTTGCTCGTCCTTCCTGTTGTTTCTTTTCTTTTGTATTCCGGGGGGAAAAATATCTTTCTCTTTT
TTCTTTCTTTTTGTGCGACTCCCCGGATTTTCATCCAATTCTCCTTCAGCCGATTCTCCTAAATT
TAAGACAATTATCCTCACTCAACTGATCTCCACCACCATTCTACGATACGATATTTTGAAAAGCT
TTTCCCATACTCTAAAAAACGACTTCCCGAACTGCTTGATCTACTCCCGATGGGCGAGAGGCGGC
TCTAACTATTCTTATATTATAGGTAGGGTACCAGGATTTTATAGG
Right flanking sequence: Indices 448480 -- 448979
GATAGTTTATCCCCTAAATTCAATTTGTTAGAACAAGTAAGAATGTACTTTTCCACCCTCCCTCG
AACAGAGCTAACTCTGAGCTATTTGACTACTTTTCCTTTCTATTCCTTGGGTTGTATTCCCGAGG
GCCACCTCTCCTCTACTTCACCTCCCGGTTGGTATAGGAATCTTAAAGTTTTTTTTTACAAGAAG
ATTGATGGTATTCCAAGAGGGGTAAAGTAGGTTATCTGCCTCTAACGAGCAATCCCATCCCCCAC
TTGATCTACGCGACCGATATTCTCAATCCCTACTTTCCTATTATATTGTTAAATACGTTCGCGGA
GAATTTGATGAATTTCGTCGACTCGAAGGGTTGCCATTAGTGTTTCTTGACTATTTTTTCGGAAG
CAAGGGGCAAAATAATGCCTAAATTATAAAGGAAAGACCCTCGCTGCCCAATAAACCATTATTTG
CTGCTCAAGACATCGGCCAATGTGTGGCTCCACCATCTGTCATTT
Found at i:450792 original size:26 final size:26
Alignment explanation
Indices: 450728--450795 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
450718 CCATTCTTTG
* *
450728 ACACAATG-AATTCACGAGCAGATGAT
1 ACAC-ATGTAATTTACGAGCAGAAGAT
* *
450754 ACACAGGTAATTTACGAGCATAAGAT
1 ACACATGTAATTTACGAGCAGAAGAT
450780 ACACATGTAATTTACG
1 ACACATGTAATTTACG
450796 GGTTTGTGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
25 2 0.06
26 34 0.94
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (26 bp):
ACACATGTAATTTACGAGCAGAAGAT
Left flanking sequence: Indices 450228 -- 450727
ATGGCAAGGACACTTTTAACAGGCGTTGGGCTCCATCAAATAGAAATCCTTCTCTTCTGGGAAAC
CTAAATTCTAAACCAAAGTGGTGAACTGGTTGGCACTCTGCACTCTTCTACTTCTGTTTCTATAG
AGGTAGGGGAAACGGTTGGGGAATGTACAAAACAAAGAATGCTGAAGAATAAACAGCGTAAAAGG
GGAAGAGTTAAAAAACCACCTAACTAAGCCTATCACACCAAATAGAAAAGAGACAAAAAGACCGA
GAAAACCTCAATTTAAGAAAAACGAGGTGGCCTTCTTGACACTAATTTGAAATAAGACGCGTTAT
TTTCTTCGTCACAGGGCGAGGCGGATGGACCGATGCTATTGCATTGTTTGCCCCGGCCTTTCTAA
TCTCATTCGTTTTCCGATCAGTACAGTATCGCGGTAGTATGATTTTGGAATCTTTCTTACTTAAG
CTTGTGCGTGTTAAAAATAAGTAGGTGAGTTGCCTCCATTCTTTG
Right flanking sequence: Indices 450796 -- 451295
GGTTTGTGATTTCTTCTCAAAAGTAGTGCACAGCATTCGTTGAAAAAAGGAATGCGGTACAGGTA
GATCGACTCAGGAAAAACAGTATCTATGAGAGATTCATTCGCTTAACGAAGCAATTGTAAGAAAA
TAGCCAAGGATCAAAGAGATAACAGCTTGACAGGAGAGGAGTGCAAGCTCACCATTCATTTACTT
TCCTACAACGGTACTTCCGTGGAGATACGATCCTACAACGACTCCTTCCTTGGAAAAGCAATTCA
AACAGTACCGGTACTCCAAAGCAATGAAACCAAAGGGAAAGACTTCTGCTCGCAGGATCAAAGAA
AAGGTAATATCCTCGGGTAAGGCAAAGCACATTCGAAGACTGCCTTTCGATTCGTATCCTCGGAA
AATAACGAGCTAGCCAAGAGAAATGTGGAGAGGCGGAAAGGGAAAGGATTGAGTAGGCCGGAAGC
CTATTTGAAAATAGGTTGCCTTCAGTAATCCGAGTAGGTAAGTAG
Found at i:469866 original size:11 final size:11
Alignment explanation
Indices: 469850--469877 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
469840 GTCGTCATGG
469850 GAAAGAAATAA
1 GAAAGAAATAA
469861 GAAAGAAATAA
1 GAAAGAAATAA
469872 GAAAGA
1 GAAAGA
469878 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 469350 -- 469849
TGAATTACAGGAAATTCAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCCGAG
ATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGACGGGCACTCCAG
GACCCGCCTACGCTCGTGAAAACCCAGGTCGGTCCTCCGACCAGATGTGTGGATAACGAGGCCAC
CTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGGGCGGTTCGCTTGAGTTGCTCA
ACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACGGAACCTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 469878 -- 470377
GATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATCTCCGCGCGTCTACCTG
GCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAG
CGATGATTGATGCAGTCAGTCAGTGCCCTCTATTATTCCTGATAGAAGGATCATGGCGCCCCGGA
AGCATTCCATCCAGCAGCATCTCCTTCAACCACGCGAAGACAAAACTGATGTTAGCTACATTCGA
GCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAAAGGAAAGG
TCGATAAAATGATTCAATCTGACTTTATCGGTATTCTGGATTGAGTAAAAAAGGGATATATGAAG
TTCAAGGCCTTGCCAAAACAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGC
GAATAACAAACTCTTTCCTGCTCCCTCGACCTTAATTCACTCCCA
Found at i:497773 original size:23 final size:23
Alignment explanation
Indices: 497747--497790 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
497737 ACGATGTGGG
497747 ATTAGATATGGATCTTAGAAAAT
1 ATTAGATATGGATCTTAGAAAAT
* *
497770 ATTATATATGGATCTTCGAAA
1 ATTAGATATGGATCTTAGAAA
497791 TAAGACTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (23 bp):
ATTAGATATGGATCTTAGAAAAT
Left flanking sequence: Indices 497247 -- 497746
GGTCCCTACTGCTTATGGGACTGTGATCGAATCAGTTCAACTGGTAGATGAAATGGGAATTTATA
TGGAAGCGCACGAGGGGAAGCAAAGACGGGGCGAAGGGATTACGGACCGGGCTTTCGATACGCTG
GATTTGATACCTTCTGATATTGCACTAGAAATGGAATAGAGGAGGAAGAGGCTAGGTAGGCTGTA
GTAGCGCATGCTGGAAAGCTAGTCAAGGTTGTTCGACAAAGCACATTAGCAAAGGTAGTTATTTC
AGTAACTTTATCTGGTTTCAATCCTTCCGTTACGAGATATCCTTTCGTACAACGGTAAGGTTTTC
CTCGGCTACCCCTATGCCCATATGGGGCAAACAATGCAATAGCTTCGGTCCATCTTTTACCTTGG
GAAAAAAACTGATTGGAACCGAAAATCCATGTTGAAGAGGAGAGGTTATCGAGCACAAGAGTGAA
GAGTAGAGGGCGCATGGGATGTGCGCTCGCTATGAACGATGTGGG
Right flanking sequence: Indices 497791 -- 498290
TAAGACTCTTTCTACTTTCGATATGTTTCTTATAGATCAAAAGATTGGTAAGAACCTCATGTTGA
TGGGATACTATGCTCTTTTGACCACCATCATCCACGCTATTGAAGCTGGGGTACAGGGTGTGAGT
GAAGAGAAGCCTCTTATTTATTAGTTGAGCCGTGCGTGTACCAGTATTCGAACGCCTATCTTATA
ACTTTATTTATTTTATCAAGTGATGGATGTGGTGGGATATATCCTTGGTTTGATTATCCATTCCG
CGAGTCTCGAAGTAGAGCTGGTCTTTTATTGATAGTAAGTACTAAAATGAAAACCCACCCACCTC
ATCACATCCTGTTGGAATGGTCCTAGGAAAGACTACGTACGAAAAATCATTCTCACAGCCAACTT
TCCTTCTTCTGAGCAAATAAATGTAGTATTTAGTCCAACCAATCATTGGTGAATCTCTTGTATGT
CTTTCGTGAAAAGTGGAGTATTTGTGCCCAAGATCTTTCTATCCC
Found at i:517744 original size:15 final size:15
Alignment explanation
Indices: 517724--517753 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
517714 TCATCACCAT
517724 AGTACTCCTACCTTC
1 AGTACTCCTACCTTC
517739 AGTACTCCTACCTTC
1 AGTACTCCTACCTTC
517754 CTACCTGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.07, T:0.33
Consensus pattern (15 bp):
AGTACTCCTACCTTC
Left flanking sequence: Indices 517224 -- 517723
TTGAATTGACCTCTACTAAGAGTAAGATAAGATGGCTTTTATTCTACTAAATCCAAAGAATGCTG
GCTAGGGTGACGCTCGTGCTTCTTTCGAGTAAGGCAAACTGAGTAAGGGGTCGTGTTATTAAGTA
TATTTCTTAGCTACAAGCCTGGCCTTTCACTTTTCTTAGTTCCCCTTTTTCCAACCTTTTCCATT
CCATATCTCACCAGTCTTCTTTCCCTGGGTTGTTCTTGAAACGCGTATTAAGTACTTCCCTCCAC
AAGTCGATCACACCAGATCAAAAAAGTAGGAAAGACCGGGCAGGCTATCAGAACTTAAAACTCAT
AAACGTCAACTTTTATCTTTAATAGCTTCAGTACTCATTCATGCCTATTGGCAATAATATGTTTC
ATCATAAGAATACCGTGAAACCTAGACATATTAAGAAAGTCCATAACTTTGATCTTCTCCACTCT
CATAGTTGCTACCACAGAATCAAGAAAGGAATCATTCATCACCAT
Right flanking sequence: Indices 517754 -- 518253
CTACCTGCTCAAAAGGAATCCTCACTATACCAACAACAGCTTAGAAAGTTCTGAAATAGGAGTGC
CATATAAGCAAACACTTTCATTACTCCAAGCGCATATGTCACATGTCAAGATTAAGCATTACTAA
CTCTTTCCATATCTGCTACCTTGAAGCGCTTTGGTCTAAGGGCTGCTTTCGATTCTTTCTTGTCT
ATCGGATTCTGTTGAGAATGAGGGTCTTCCTTCTGGTGATCACCATACCATAGTGGTAGATTAAG
CTTTTGAACAAGGATTTGCTCTATAACCCGGGAAAGGAAGCTTCTACGTGAAGTTTGCGAGACGG
GTGGTGCCATTTATAGAAAAGATTGGCTACAATAGCACTTTATGCACTTAACTTTTGGCTATTCT
ACATGGGCAACAACTAGCCTGGGAAATGGGCTTCATTCAAGTCTTGGTCTTTTCGGATTCACTTA
TTTAAGTGCATTTTATTAAGGAAAGAGCCTACCTACCCAAACCTG
Done.