Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 7 of 8
Found at i:928283 original size:54 final size:54
Alignment explanation
Indices: 928211--928334 Score: 239
Period size: 54 Copynumber: 2.3 Consensus size: 54
928201 AAGCTCTCTA
*
928211 TCTGGCTTTGGATCTGGATCTTGACCTGGGTTAACTACTCATACCTCTCTAGCT
1 TCTGGCTTTGGGTCTGGATCTTGACCTGGGTTAACTACTCATACCTCTCTAGCT
928265 TCTGGCTTTGGGTCTGGATCTTGACCTGGGTTAACTACTCATACCTCTCTAGCT
1 TCTGGCTTTGGGTCTGGATCTTGACCTGGGTTAACTACTCATACCTCTCTAGCT
928319 TCTGGCTTTGGGTCTG
1 TCTGGCTTTGGGTCTG
928335 AAGGATATGG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (54 bp):
TCTGGCTTTGGGTCTGGATCTTGACCTGGGTTAACTACTCATACCTCTCTAGCT
Left flanking sequence: Indices 927711 -- 928210
CCCATGCCCGCACCAGTTTTGCTGCTATAGTTTACCCAGTTAGAGAAATAGCACCAGCAGCAGGG
AAGCAAGCAACGGGAGAAGTCAAGGTAGGAGCAGAGCCAGTTTAAGTTAAAGCAGCAATTATGTA
CATACTACTGAACGTTTTTCCGAGCTAGCTACATTTTGACTGTGCTTGAAATGGGAGCACCCATT
CTTATGAAGATGCAGGGGTTTCACCTGTTGACTCGTAATCCATTTAAGTTGAACCAGTAAATGCG
CCAGCTTCAGTGCTAGTTGCTTCATATCCATTTCCAGTCCCAACATCAACGCAAATTTGAGAACC
ATAGCCAGTTTAAGCTACTCGTGCTGCTACTGCTAGATAAACTGATGTTAGGTCTACTACTGGTG
TTACTGGTGCTAGGTCAGGAACTGCTACTACTGGTGCTTAGTAAACTGCATAGTTTGAGTCAAAA
GCTCAATCGACTGCTTAACCGACTGGATCTGCTTCAAGCTCTCTA
Right flanking sequence: Indices 928335 -- 928834
AAGGATATGGGTCAGAATCTCGATATAGAACATCTGGCTCTTAATATCTATTACTAGCTGGATCT
TGCTCTCGATATGGAAGATCTGGATCATGCTCACGAAGGTATGGATCACGAGTATCCGCCTTTGC
TTCTCCCGTTGCTTATGCTGTTGCTGGTACTGGTGCATCTGGGTATGCTTAAACAACTGGATCAA
CAGAAGAAACTGATGAACCAACTACTGATAGTCTACTGTCGGATCATTCACCGCTACTAGGTATA
GGTATGCTGCTGAGTCCACTGGATAAGCTGCTAGTGGATATGCTACTGCCTCTCCCGTCTCTGCT
TCTTACTCTACTGATACTGGTGCTGCTACTGAATATGCTTATGCTTCAAGCTCTCGATCTGGATA
TGCTACTGCTTATGCGTATGAATTTGGATCTGTATATGTTACTGAAACTACTGTTCGATCTGGAT
CTGGGTCTCGTTCTTCACCACCTGAAACAACTGGTTATGGGTATC
Found at i:934648 original size:16 final size:16
Alignment explanation
Indices: 934617--934656 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
934607 CACCTTACAA
934617 AGGAAGGTCCTTACTT
1 AGGAAGGTCCTTACTT
934633 AGGAAGGT-CTTGACTT
1 AGGAAGGTCCTT-ACTT
934649 AGGAAGGT
1 AGGAAGGT
934657 GAGGGCCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 3 0.13
16 20 0.87
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.28
Consensus pattern (16 bp):
AGGAAGGTCCTTACTT
Left flanking sequence: Indices 934117 -- 934616
GAAATTCTATATATATAGGCGGGTGCTTTTAGGAAGTTCTCTACCATAGTTCCTACCTCAATTCA
GACAGACTAGATATCGGGTAAAATGACCACAATGAGCAATTCATATTATATGGGAAATTGAATTA
TTAGCTCCTTCTGCCTTAACCTTACATTGACAAGAAAACCCAAGCTCATAAGCCCGCCCATTAGC
CCTCCAGTATACCACTCTCTAATACCCTTCCTTAGCAAGCCCTTAGGATAGGAACACATAAGATA
AGCAAGCCCAAAAGTAGCTGTTCATGAGGTGGCGAAATCCATAGCTACCTAAGAGATTGGCAAGT
CCAATAATTCAGATAGGAAGGCAGGACCCTTTAGAGATAGGCAGGCAGACTACAGATTAGATATT
CAGGTATCTATCCGGGATGAACCACTTTGACGATCTTCATCGAGGTTCGACCATAAGGGTTAGGA
AGGATGGCTCAACCTTAGGGAGAGGAAGAAAGGCTCACCTTACAA
Right flanking sequence: Indices 934657 -- 935156
GAGGGCCCTTACTTCTTAGGGGTCACTCGACCAACGGGCCGCCATCGATTTCTCGCTCGACCACC
CTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAAGTGACTCGACTGATAAGG
AGAGGAAGGGACTAAGACCGCGGTATGTACACCCTTTGGTTCACTTGACGTAAAGCTTCATTTAC
TTTGGTTTTTCTAGCTAGTTTATTTCCCTTCATCAGTTGAACTCAATAGCTTTTCTAACCACCCT
ATCTTTTGGTTGAACTCAATAGCTTCTGTACGGTTATTCCTTCCCGCCTCTCTCATTAGCCCTAA
TCTGGGGGTTTCTCCCATAGCGCTTATCTAACTGCTCTAATCTGTTGTTCGGTTTCACTCTGTTG
GTTGCCACTCAATGCTTTTGGTTCACCCCTATCTGTACTAGTTTGACCCAGTTCTGTACAACCCA
GTTCTTGCCAGCTTCTCTTGCCAGCTTCTATTGCCACCTCTGTAG
Found at i:935132 original size:13 final size:13
Alignment explanation
Indices: 935114--935147 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
935104 ACAACCCAGT
935114 TCTTGCCAGCTTC
1 TCTTGCCAGCTTC
935127 TCTTGCCAGCTTC
1 TCTTGCCAGCTTC
*
935140 TATTGCCA
1 TCTTGCCA
935148 CCTCTGTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.35, G:0.15, T:0.38
Consensus pattern (13 bp):
TCTTGCCAGCTTC
Left flanking sequence: Indices 934614 -- 935113
CAAAGGAAGGTCCTTACTTAGGAAGGTCTTGACTTAGGAAGGTGAGGGCCCTTACTTCTTAGGGG
TCACTCGACCAACGGGCCGCCATCGATTTCTCGCTCGACCACCCTTTAGTTACTTATTTGAGAGG
GGCCACCCAATAAGCATCAAGGAAAGTGACTCGACTGATAAGGAGAGGAAGGGACTAAGACCGCG
GTATGTACACCCTTTGGTTCACTTGACGTAAAGCTTCATTTACTTTGGTTTTTCTAGCTAGTTTA
TTTCCCTTCATCAGTTGAACTCAATAGCTTTTCTAACCACCCTATCTTTTGGTTGAACTCAATAG
CTTCTGTACGGTTATTCCTTCCCGCCTCTCTCATTAGCCCTAATCTGGGGGTTTCTCCCATAGCG
CTTATCTAACTGCTCTAATCTGTTGTTCGGTTTCACTCTGTTGGTTGCCACTCAATGCTTTTGGT
TCACCCCTATCTGTACTAGTTTGACCCAGTTCTGTACAACCCAGT
Right flanking sequence: Indices 935148 -- 935647
CCTCTGTAGGTCTGATATCCTACCAACAACCAACCTTGAAGGCAGTGTTGCCACTGTGCCGCTTA
CCGTCTTTATTCCAAAGTCTCTCTTATCTGTCTTGCCAGCCTAATGGTAAGGCAGAGAGTAAGGG
ATTGTTTAGAGAAATGAATTAGTTCATTAGGATCTCTAGTAGGAATAGTCTTGATAGTAGGAATA
GTAACTAGTCTATCGGTCTTTATGGAAGGAGATGAAGTACCTTATTTGTTTCAGTACAACCAACC
TATTCTGTATCAAGCTTGTACTCGTATCAAGTAGGATCTGAAATTAGCTTATCCATATTAGTAGC
TCCTCCTTTGAATCAACAATTAGCTCCTTCTTAATCTGAGCTCCTTAATAAGTGATCCAGTTCAG
TAAGAATCAATCCACCTGAGAGACCCTGCCCTTTTACCTTAACAGCAGAAGCAACCCTTTCAGCT
CATCTTGAATTTAGACCTTGCTTGCCGGTAGGTCAGATGGAGATA
Found at i:937394 original size:29 final size:29
Alignment explanation
Indices: 937352--937440 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
937342 GCCCCCCTCT
937352 GACCTTTGTTTCTATGGAATAACCTAATA
1 GACCTTTGTTTCTATGGAATAACCTAATA
937381 GACCTTTGTTTCTATGGAATAACCTAATA
1 GACCTTTGTTTCTATGGAATAACCTAATA
*
937410 GACCTTTGTTTCTATAGAATAACCTAATA
1 GACCTTTGTTTCTATGGAATAACCTAATA
937439 GA
1 GA
937441 ATAACCTATT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (29 bp):
GACCTTTGTTTCTATGGAATAACCTAATA
Left flanking sequence: Indices 936852 -- 937351
AAATCACTACTCTATGTGAGGCGCATAAAGCATTGATTACACCAATTACGGACCCGGACGATCTA
GAGAAACATCAAAAGAGCGTCATCGAGCTCTATAGTCACAAGTTAGTGAGTTATCTTGCCTTTTA
CTGCAAGAGCCACAATTCCCGCAAAACCAAAGAGTTACTGAGAAAGAAAATGCTCACTGCGTGTT
TACTTCATTTGGCAAAAATCTCTTCCACCCCCCTAGCCGCTATTAAGAAGAAATGGGGTCCGGCA
TTGGATAGAGCCCCCGTGCCCTTTATAACTCGGAAACAGACAGATTCTGCTTTGAAGAACATACT
ATTGAAATTTCACCGGGAGCAACACAAGTTTCTGAAAGGCCCTCTCCCGGGGGTCGAGCGTTCGT
TACCTCACCCTCACCATCGGAATAGTGAGGACTCCGCCCCTAAAAGGCACAAGTAGGAAAGACCA
TAATATGCCAGCTTTTTTCTTTCTCTCTCCGAGAGGCCCCCCTCT
Right flanking sequence: Indices 937441 -- 937940
ATAACCTATTCGAGTATTTATGAATACGGCTCTGTCTCTTCGAGCCAGAGAATGGGTCCTTGCCC
CGGAGGGAAAGCTGCTTCGCACCTTACCTTAGCGTAATGACATATATAATGAGATATCTCTTTGT
ATACGATATTCTTCTCCAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTGTTA
GTCGACGAAGAAGGCGGACCTATTTGAGGGCTAAGCGAAGTAAACCAGAGAGGGATATTTCTCTA
CGTCATTTTGCCTTCTTTGGGGCTCCCTCAAATCTTTCTCAAAGTCTGAGTTTGCTTGCTGAACG
GGACCTTCCGCTATGCTCATCAGGTAAGACTTTTCTGGTTCAGCTCAGTCAGTGCCCTAAAAAAA
CTATTTACTAGTTGTTTCTTCAATTTGATAAATAGGGGGGGGCGAAATGAAAAATCAGTAGTGTT
TGGGTCCTGAAACGCAGTCAGTAAGGTCTTGCCCTTCTATTAGAG
Found at i:937441 original size:13 final size:13
Alignment explanation
Indices: 937423--937448 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
937413 CTTTGTTTCT
937423 ATAGAATAACCTA
1 ATAGAATAACCTA
937436 ATAGAATAACCTA
1 ATAGAATAACCTA
937449 TTCGAGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (13 bp):
ATAGAATAACCTA
Left flanking sequence: Indices 936923 -- 937422
CATCAAAAGAGCGTCATCGAGCTCTATAGTCACAAGTTAGTGAGTTATCTTGCCTTTTACTGCAA
GAGCCACAATTCCCGCAAAACCAAAGAGTTACTGAGAAAGAAAATGCTCACTGCGTGTTTACTTC
ATTTGGCAAAAATCTCTTCCACCCCCCTAGCCGCTATTAAGAAGAAATGGGGTCCGGCATTGGAT
AGAGCCCCCGTGCCCTTTATAACTCGGAAACAGACAGATTCTGCTTTGAAGAACATACTATTGAA
ATTTCACCGGGAGCAACACAAGTTTCTGAAAGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTC
ACCCTCACCATCGGAATAGTGAGGACTCCGCCCCTAAAAGGCACAAGTAGGAAAGACCATAATAT
GCCAGCTTTTTTCTTTCTCTCTCCGAGAGGCCCCCCTCTGACCTTTGTTTCTATGGAATAACCTA
ATAGACCTTTGTTTCTATGGAATAACCTAATAGACCTTTGTTTCT
Right flanking sequence: Indices 937449 -- 937948
TTCGAGTATTTATGAATACGGCTCTGTCTCTTCGAGCCAGAGAATGGGTCCTTGCCCCGGAGGGA
AAGCTGCTTCGCACCTTACCTTAGCGTAATGACATATATAATGAGATATCTCTTTGTATACGATA
TTCTTCTCCAGTTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTGTTAGTCGACGA
AGAAGGCGGACCTATTTGAGGGCTAAGCGAAGTAAACCAGAGAGGGATATTTCTCTACGTCATTT
TGCCTTCTTTGGGGCTCCCTCAAATCTTTCTCAAAGTCTGAGTTTGCTTGCTGAACGGGACCTTC
CGCTATGCTCATCAGGTAAGACTTTTCTGGTTCAGCTCAGTCAGTGCCCTAAAAAAACTATTTAC
TAGTTGTTTCTTCAATTTGATAAATAGGGGGGGGCGAAATGAAAAATCAGTAGTGTTTGGGTCCT
GAAACGCAGTCAGTAAGGTCTTGCCCTTCTATTAGAGAAGGGTCT
Found at i:939184 original size:13 final size:13
Alignment explanation
Indices: 939166--939199 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
939156 ATTCCCGGAA
939166 GATGGGATGCCAT
1 GATGGGATGCCAT
939179 GATGGGATGCCAT
1 GATGGGATGCCAT
*
939192 GATAGGAT
1 GATGGGAT
939200 TTTACACCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.12, G:0.38, T:0.24
Consensus pattern (13 bp):
GATGGGATGCCAT
Left flanking sequence: Indices 938666 -- 939165
AGCAATGCCGCCATATAATCCATCCAACAGCTCTATGTGAAGCTCTTCCATCCGTCCGATCTAAT
GCAGTCAGTAAGTTTGGAGCATGATTCCTAAGTAGGATAAGTGATGCAGGCAAGTCAATATGGCT
ATTGATGAACCTGGAGGAAATGCCGTAGCTTAGAGAGGAAATGATGCTCCCAACCGATAGATGCT
TAGAAGGTGTTGCACTCACTAGTTCAGATGTTACACTCACTATATTGACTACTACAGCTCCCACT
CCAAACTAATGATTGGTGTAAACGATGAAATGATGGCTCAGAAATAGGATGCACTGGATCAACCA
ACTATTGGATGGCGGCGCTTCGCCCTATACTCTTTCTTGACCTTCTATTTCCCCATACCTTGGCC
TACCCTTTCCCTCTCGCTACGTAACTACGCGGGGTCGATTCACTAGGCCTACGCTTTGACCCGAT
TAAGGTTACGATATGATTATGCTTGCTTCCCCACGATTCCCGGAA
Right flanking sequence: Indices 939200 -- 939699
TTTACACCAGCAATAGAATAGAGCTTTAAGAAAATAGAAAATAGAAAATAGAAAATAGAAAAGAA
GAAAAGAGAGAGAACCCCTTATCCGCTCTTCTTCCCGCTTTATTCTCTCGGGATTCAACATTTAG
ATTATAAATGTTGAATCCCCGTGTGTTTTATTAAATATAGAGAGGAGAACACCTAACTCCATGAT
TTTCTTTCTATTGACTGAAAAGATCCATCTATATATGCTAATATGCCATCCCGACCAAAGGGAGG
GTATATCAGACTTGTGATTGTATATGATATTATGGACTTAAACCGACCGAAGGGAAGGTTTTCAG
GCTTATTCCTCCCGACCAAAGGGAGGGGACTAATAAATGTTCCCCAGCGAAGCGTTAGCAAAGCG
ACCTATTATTAATGTAATTATGGGGAGCGAAGCGTAGTTGAACGAACAAGTGAGTGATGAACGAA
CAAGTGGTTAGTCTCTTTCCTTTTGATTGAAAAAAACGGACACTT
Found at i:939240 original size:7 final size:7
Alignment explanation
Indices: 939228--939261 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
939218 TAGAGCTTTA
939228 AGAAAAT
1 AGAAAAT
939235 AGAAAAT
1 AGAAAAT
939242 AGAAAAT
1 AGAAAAT
939249 AGAAAAT
1 AGAAAAT
939256 AGAAAA
1 AGAAAA
939262 GAAGAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.12
Consensus pattern (7 bp):
AGAAAAT
Left flanking sequence: Indices 938728 -- 939227
AATGCAGTCAGTAAGTTTGGAGCATGATTCCTAAGTAGGATAAGTGATGCAGGCAAGTCAATATG
GCTATTGATGAACCTGGAGGAAATGCCGTAGCTTAGAGAGGAAATGATGCTCCCAACCGATAGAT
GCTTAGAAGGTGTTGCACTCACTAGTTCAGATGTTACACTCACTATATTGACTACTACAGCTCCC
ACTCCAAACTAATGATTGGTGTAAACGATGAAATGATGGCTCAGAAATAGGATGCACTGGATCAA
CCAACTATTGGATGGCGGCGCTTCGCCCTATACTCTTTCTTGACCTTCTATTTCCCCATACCTTG
GCCTACCCTTTCCCTCTCGCTACGTAACTACGCGGGGTCGATTCACTAGGCCTACGCTTTGACCC
GATTAAGGTTACGATATGATTATGCTTGCTTCCCCACGATTCCCGGAAGATGGGATGCCATGATG
GGATGCCATGATAGGATTTTACACCAGCAATAGAATAGAGCTTTA
Right flanking sequence: Indices 939262 -- 939761
GAAGAAAAGAGAGAGAACCCCTTATCCGCTCTTCTTCCCGCTTTATTCTCTCGGGATTCAACATT
TAGATTATAAATGTTGAATCCCCGTGTGTTTTATTAAATATAGAGAGGAGAACACCTAACTCCAT
GATTTTCTTTCTATTGACTGAAAAGATCCATCTATATATGCTAATATGCCATCCCGACCAAAGGG
AGGGTATATCAGACTTGTGATTGTATATGATATTATGGACTTAAACCGACCGAAGGGAAGGTTTT
CAGGCTTATTCCTCCCGACCAAAGGGAGGGGACTAATAAATGTTCCCCAGCGAAGCGTTAGCAAA
GCGACCTATTATTAATGTAATTATGGGGAGCGAAGCGTAGTTGAACGAACAAGTGAGTGATGAAC
GAACAAGTGGTTAGTCTCTTTCCTTTTGATTGAAAAAAACGGACACTTTGGTAAGCGAAGCGTTA
AAGACCAGGTGTTTGCGCGCGAAGCGTGCCCAATCTATCTTCTTT
Found at i:942752 original size:12 final size:12
Alignment explanation
Indices: 942719--942755 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
942709 GCTCGCTTTA
*
942719 TGCTGGGTCAAG
1 TGCTGGGTCCAG
942731 TGCTGGGTCCAG
1 TGCTGGGTCCAG
942743 TGCTGGGTCCAG
1 TGCTGGGTCCAG
942755 T
1 T
942756 AAGTGCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.11, C:0.22, G:0.41, T:0.27
Consensus pattern (12 bp):
TGCTGGGTCCAG
Left flanking sequence: Indices 942219 -- 942718
TAGAGTGTCTGGCTGGATAAAAGCTCCCCGTAGGAATAGTAGTTCCAGGCTGGGATTAACCTGAC
CCTGTAGATGAGTTCTTGCCGGCCCAAGTACCTCTAGTTGGGGTCTAATTATAGTCTGATGGGCT
GATCTGCCTAACCTACAAGCAAGCATACCTACCCTACTTCTTGACTGATTAGACCGAATCATAGG
TGGTAATCCTAATGACTATGGGCTGGTAATCCTGGCTAGCTGGTTGGTTGGTTGGGGAACCTCCT
AAGCTAGTGGGCTGTAACTATCCCTAGCCTACTATAGGATCTGGATCCTGATCTCTAACGGGTAA
AACCACTGCCTCTGTGGGATCAACTTCAATTGCTGGTTCATCAACTGGTCAAGCTGAGCCATGCG
AATCAGAGGGGATCAGAGTCACAGCCTCTTTCTCTTTTATTAGCGAGGCAGTCTCGGCCCAAGCT
TTGACGTCTGGTCCTACCTTGCTTATCCGGTTCAGGCTCGCTTTA
Right flanking sequence: Indices 942756 -- 943255
AAGTGCCTTTATTCGCTAAAGTGCATGGATTATACTTTTCATTTCCTGCCTGTCTTCAGCCGGTA
GGACAGGGTGGTCTTATACAATCTTTTTATGATAGCCGGTCCTTGTTATGGTGGTAGTTATATAT
GAGCATATGGATGCGCAAGCAGGCTCGACCGCTAGCTAGTTACTTAATTTGAGAGCCCAATAAGT
CAATTGAACTTGAATCCAATTCATTTGCTGCCGTAATGACATATATAATGAGAGTGATTTCCTAG
CTAGAGATGGAAAGGACGTAGGGCTCGCCTGACATAAGGAGGGCGAGGACGTATCTATGTGATAT
CGTATATCTATTATTGATGTAGAGATCTAGAGAAAAGGCAGTGTCATTTCGGCCAACCACTGTTT
CGACATCCATGCTAGGCTTTCCCGCCTTGTCCAAAATAAGTATCCGTGCACACCTAACTCACTCC
GTCGGGATGGGTGATTGAACGTATAACGTATATATGTGAGTATCA
Found at i:944596 original size:14 final size:14
Alignment explanation
Indices: 944579--944605 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
944569 TGGGAGACTA
944579 ATGAATAGAGACCT
1 ATGAATAGAGACCT
944593 ATGAATAGAGACC
1 ATGAATAGAGACC
944606 AATTTCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (14 bp):
ATGAATAGAGACCT
Left flanking sequence: Indices 944079 -- 944578
GAGTTGAATCCGGTTACCTTACCTTATATCTAGGCTAATGCGAGTGACCTTATAGCTAGGAATGG
AGATCTATCTCCTCTCCTTGGGTAAGTAGCTCCTTGGTTCACTAGCTCCTTCCATCAATCACTAG
CAACGAATTCAGATCTCCGAATAGCTGCGAATAATGTGACCTTATAGAGGTACGATAATCCCAGT
GATAGGAAAAAGCCAGTGACCTTATAGCAAAGTAGAATCCCCTCCCTTCCCTTAGGATCGACCAC
TTCACTAGGGGTTGCAAGAGAGTGCTGGGCCTTATTGAATCTGTTTGTCTATGTCTCTGAGTGTT
TCCTTCCTCAGTGATCTATCTATGGCTCGTAAGTCTGTTGAATATGAATGAATCATATGCTTATG
GCAGGGGTTAATGAGGCAGTGTGAATTGGGTTAATGAGAGGGAATACGTAAAAGACTAGCTAGGT
AAGCCGTACCTTGCTTCATAATGTGCAAACCATAGTGGGAGACTA
Right flanking sequence: Indices 944606 -- 945105
AATTTCATTTGGATAAGAAATATCCTTCTCCTTATGCGATTGGTTGATGAGGCAGTGTGAAATAG
CCCACACTTGTGCGCACACGAGGCAGTGGGAATATAGCGCACCCCTGAGGAATGTAAGATCCCCT
GAGGTAATTCGCATGTCCACGGCAATGTCTCTCTCTGAGTGTTTCCTCAGTTTTAGAGCTTTAAC
ACAACGGTTGATGAGGCAGTGGTAATGTGCAGACCTCAACACTATGGAGACCTATGAATAAGCAT
CCTATTAGAATGTCTCATTCATATCCTTTCCTTATGGGATTGTTTTATGAGGCAGTGGTCAAGTC
TATAGTTCGTTAATCTCCTTCCTGGGCACAATAAGGGACTTAACCCCTGACGTACTGAGCCTGAC
CCCGGTTATAAAGACTGTTAAGGTTGCCTAAGCTTTTTCACCTTTCATTCAGGTTGCCTAAGGAA
TGTAAGGGATGAGGAACACGACTTAGGGTCCACCAGAGCTCAGTC
Found at i:951397 original size:26 final size:26
Alignment explanation
Indices: 951356--951405 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
951346 CAGGTGGGAT
*
951356 CCCTCACCATCGGAATAGTGAGTGAC
1 CCCTCACCATAGGAATAGTGAGTGAC
*
951382 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATAGGAATAGTGAGTG
951406 GCTCCGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (26 bp):
CCCTCACCATAGGAATAGTGAGTGAC
Left flanking sequence: Indices 950856 -- 951355
CAGGTGGGAACCCAGATGGCAGGTGGTAGGCCCTGTAGGTGGGCTTGGTGGTACTGTCCTGATTG
TCTTGTCCTGATTGGATAGGTGGTCCTGTACTGGTGGGGGTTGGTGCCTCTCTGGTTGGAAGGGG
GTTACGGGGTCCCCCGTGCAGTAAGTGTTGGCAGGTCGGTCCCCAGCCAGAGCTAGTGCTTCTTC
TTTCTCTCTCAGAGCCATTCCAGCCCAGGTAGGAACAAGCTGTGTTGGTTCCGTGCAGCTTGCTT
TCTTTTCTCGGCTATTTCCCAGGCGGGTAGGTTATCCTGGTGGGCATCAGGTTAACTGCAGGTGT
GATGGGGGAACATGGGGAGCATCATCAATAGAATAAATCCAATCGAATAAATAAGCCCGAAATAA
AAAGAAAGAGGTGACACGTTATATAAACGTAAGTAAGTTATGTGATATCAGCACCTAGCTGGACT
GTTGGAGTGAGGTGGGTGGCTCCGTAGTTGGTGGGCAGGTGGGAT
Right flanking sequence: Indices 951406 -- 951905
GCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAATAATATAGGGCCCTGGTTAGTTAG
TTGGCAGGTTGAAGTAATCCCTCACCATCGGAATAGTGAGTGACCCCTCACCATATGAATAGTGA
GTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCC
CCTAAAGGTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCT
AAATAATATAGGGCCCTGTAGGTGGTATTGGTTGGCCTGGACTGCTTTACTTGGTGTTTCCCCAG
GGCTCTCTCTTTTTGGCAGGGGGGTCGGGAAAGGCTGTGGGTTCG
Found at i:951448 original size:27 final size:27
Alignment explanation
Indices: 951412--951470 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
951402 AGTGGCTCCG
951412 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
951439 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
951466 CCCCT
1 CCCCT
951471 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 950912 -- 951411
TCCTGATTGTCTTGTCCTGATTGGATAGGTGGTCCTGTACTGGTGGGGGTTGGTGCCTCTCTGGT
TGGAAGGGGGTTACGGGGTCCCCCGTGCAGTAAGTGTTGGCAGGTCGGTCCCCAGCCAGAGCTAG
TGCTTCTTCTTTCTCTCTCAGAGCCATTCCAGCCCAGGTAGGAACAAGCTGTGTTGGTTCCGTGC
AGCTTGCTTTCTTTTCTCGGCTATTTCCCAGGCGGGTAGGTTATCCTGGTGGGCATCAGGTTAAC
TGCAGGTGTGATGGGGGAACATGGGGAGCATCATCAATAGAATAAATCCAATCGAATAAATAAGC
CCGAAATAAAAAGAAAGAGGTGACACGTTATATAAACGTAAGTAAGTTATGTGATATCAGCACCT
AGCTGGACTGTTGGAGTGAGGTGGGTGGCTCCGTAGTTGGTGGGCAGGTGGGATCCCTCACCATC
GGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 951471 -- 951970
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAATAATATAGGGCCCTGGTTAGTTAG
TTGGCAGGTTGAAGTAATCCCTCACCATCGGAATAGTGAGTGACCCCTCACCATATGAATAGTGA
GTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCC
CCTAAAGGTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCT
AAATAATATAGGGCCCTGTAGGTGGTATTGGTTGGCCTGGACTGCTTTACTTGGTGTTTCCCCAG
GGCTCTCTCTTTTTGGCAGGGGGGTCGGGAAAGGCTGTGGGTTCGCTGCTTTCTTTCGGTTCGCT
GACAAGATCTCCTCATCTCTCAGGTAGGTGGGGCTGTGGCCTATC
Found at i:951480 original size:27 final size:27
Alignment explanation
Indices: 951422--951492 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
951412 CCCCTCTCCT
*** *
951422 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
951449 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
951476 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
951493 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 950922 -- 951421
CTTGTCCTGATTGGATAGGTGGTCCTGTACTGGTGGGGGTTGGTGCCTCTCTGGTTGGAAGGGGG
TTACGGGGTCCCCCGTGCAGTAAGTGTTGGCAGGTCGGTCCCCAGCCAGAGCTAGTGCTTCTTCT
TTCTCTCTCAGAGCCATTCCAGCCCAGGTAGGAACAAGCTGTGTTGGTTCCGTGCAGCTTGCTTT
CTTTTCTCGGCTATTTCCCAGGCGGGTAGGTTATCCTGGTGGGCATCAGGTTAACTGCAGGTGTG
ATGGGGGAACATGGGGAGCATCATCAATAGAATAAATCCAATCGAATAAATAAGCCCGAAATAAA
AAGAAAGAGGTGACACGTTATATAAACGTAAGTAAGTTATGTGATATCAGCACCTAGCTGGACTG
TTGGAGTGAGGTGGGTGGCTCCGTAGTTGGTGGGCAGGTGGGATCCCTCACCATCGGAATAGTGA
GTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCT
Right flanking sequence: Indices 951493 -- 951992
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGT
GAGTGGCTCCGCCCCTAAATAATATAGGGCCCTGGTTAGTTAGTTGGCAGGTTGAAGTAATCCCT
CACCATCGGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTC
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGTTGACAGTCGAGCC
CCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAATAATATAGGGCCCTGTAGG
TGGTATTGGTTGGCCTGGACTGCTTTACTTGGTGTTTCCCCAGGGCTCTCTCTTTTTGGCAGGGG
GGTCGGGAAAGGCTGTGGGTTCGCTGCTTTCTTTCGGTTCGCTGACAAGATCTCCTCATCTCTCA
GGTAGGTGGGGCTGTGGCCTATCGTTTATAACCTCCCTAGGCCTG
Found at i:951660 original size:26 final size:26
Alignment explanation
Indices: 951619--951668 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
951609 TTGAAGTAAT
*
951619 CCCTCACCATCGGAATAGTGAGTGAC
1 CCCTCACCATAGGAATAGTGAGTGAC
*
951645 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATAGGAATAGTGAGTG
951669 GCTCCGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (26 bp):
CCCTCACCATAGGAATAGTGAGTGAC
Left flanking sequence: Indices 951119 -- 951618
TTTCTCGGCTATTTCCCAGGCGGGTAGGTTATCCTGGTGGGCATCAGGTTAACTGCAGGTGTGAT
GGGGGAACATGGGGAGCATCATCAATAGAATAAATCCAATCGAATAAATAAGCCCGAAATAAAAA
GAAAGAGGTGACACGTTATATAAACGTAAGTAAGTTATGTGATATCAGCACCTAGCTGGACTGTT
GGAGTGAGGTGGGTGGCTCCGTAGTTGGTGGGCAGGTGGGATCCCTCACCATCGGAATAGTGAGT
GACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
CTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTA
AAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCT
AAATAATATAGGGCCCTGGTTAGTTAGTTGGCAGGTTGAAGTAAT
Right flanking sequence: Indices 951669 -- 952168
GCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAA
TAATATAGGGCCCTGTAGGTGGTATTGGTTGGCCTGGACTGCTTTACTTGGTGTTTCCCCAGGGC
TCTCTCTTTTTGGCAGGGGGGTCGGGAAAGGCTGTGGGTTCGCTGCTTTCTTTCGGTTCGCTGAC
AAGATCTCCTCATCTCTCAGGTAGGTGGGGCTGTGGCCTATCGTTTATAACCTCCCTAGGCCTGG
TAAGCGTAAGTAAGATCACAAGGTATCGATCAGCATTTCGTTAGTCCAGTCCATTCAAGGTAGTT
CCTGTTTTCGGTACGTTAAGCTTTCATGTTGGTAACATCCTCCATAAGTTAGCATCCTCCATAAG
TTAGCATCCTCCTCCATAAGTTGGTAACATGGGTTCTATCGATCA
Found at i:951711 original size:27 final size:27
Alignment explanation
Indices: 951675--951733 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
951665 AGTGGCTCCG
951675 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
951702 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
951729 CCCCT
1 CCCCT
951734 AAAGGTTGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 951175 -- 951674
AGGTGTGATGGGGGAACATGGGGAGCATCATCAATAGAATAAATCCAATCGAATAAATAAGCCCG
AAATAAAAAGAAAGAGGTGACACGTTATATAAACGTAAGTAAGTTATGTGATATCAGCACCTAGC
TGGACTGTTGGAGTGAGGTGGGTGGCTCCGTAGTTGGTGGGCAGGTGGGATCCCTCACCATCGGA
ATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTC
GAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTA
CGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGC
TCCGCCCCTAAATAATATAGGGCCCTGGTTAGTTAGTTGGCAGGTTGAAGTAATCCCTCACCATC
GGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 951734 -- 952233
AAAGGTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAA
TAATATAGGGCCCTGTAGGTGGTATTGGTTGGCCTGGACTGCTTTACTTGGTGTTTCCCCAGGGC
TCTCTCTTTTTGGCAGGGGGGTCGGGAAAGGCTGTGGGTTCGCTGCTTTCTTTCGGTTCGCTGAC
AAGATCTCCTCATCTCTCAGGTAGGTGGGGCTGTGGCCTATCGTTTATAACCTCCCTAGGCCTGG
TAAGCGTAAGTAAGATCACAAGGTATCGATCAGCATTTCGTTAGTCCAGTCCATTCAAGGTAGTT
CCTGTTTTCGGTACGTTAAGCTTTCATGTTGGTAACATCCTCCATAAGTTAGCATCCTCCATAAG
TTAGCATCCTCCTCCATAAGTTGGTAACATGGGTTCTATCGATCAATCGAATCAATCTAGCAAGC
CCACGAGAAAATAAAGAGGTAACACAGTATATGTACGTAAGTAAG
Found at i:952145 original size:20 final size:17
Alignment explanation
Indices: 952094--952135 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
952084 ATGTTGGTAA
952094 CATCCTCCATAAGTTAG
1 CATCCTCCATAAGTTAG
952111 CATCCTCCATAAGTTAG
1 CATCCTCCATAAGTTAG
952128 CATCCTCC
1 CATCCTCC
952136 TCCATAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.29
Consensus pattern (17 bp):
CATCCTCCATAAGTTAG
Left flanking sequence: Indices 951594 -- 952093
TAGTTAGTTGGCAGGTTGAAGTAATCCCTCACCATCGGAATAGTGAGTGACCCCTCACCATATGA
ATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGT
CGAGCCCCCTAAAGGTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGTGAGTGGCTC
CGCCCCTAAATAATATAGGGCCCTGTAGGTGGTATTGGTTGGCCTGGACTGCTTTACTTGGTGTT
TCCCCAGGGCTCTCTCTTTTTGGCAGGGGGGTCGGGAAAGGCTGTGGGTTCGCTGCTTTCTTTCG
GTTCGCTGACAAGATCTCCTCATCTCTCAGGTAGGTGGGGCTGTGGCCTATCGTTTATAACCTCC
CTAGGCCTGGTAAGCGTAAGTAAGATCACAAGGTATCGATCAGCATTTCGTTAGTCCAGTCCATT
CAAGGTAGTTCCTGTTTTCGGTACGTTAAGCTTTCATGTTGGTAA
Right flanking sequence: Indices 952136 -- 952635
TCCATAAGTTGGTAACATGGGTTCTATCGATCAATCGAATCAATCTAGCAAGCCCACGAGAAAAT
AAAGAGGTAACACAGTATATGTACGTAAGTAAGTGATTTGATATGATAACCTAGCCTAGCTGGTC
TGGTTAGTGCTAGTCGTAGTTGTGTTGTAAGGTGGGTGTTGTATCTTGGTGGGTGTTTTAGTTCG
CTATCGCAGGTCAGTAAGCAAAATTCTGTCACTATATATCGTAGTTGGAGGCGGGATAACGGTCA
AATAATTCCCCAGCACCCGCCCGGTACGGTAAAGTAATTCCCCGATCCGCTCGTTCTTCGAGCCC
TGCGTTTGTACAGTTCTTTCCAGCTAGGCCAGTCAGAAAAAGGCCAGTAGCCATAAAAAGGAAGG
CCAGTCTCTAGAGTTGGAGGAAAGCCAGCCTTATGAATCGACATTGAAAAGTGGAAAGCCATAGT
TATTGTTCCGTTGAGAAGAAAGAAGGCGACCCTAGAAAGAGGAAG
Found at i:953166 original size:13 final size:13
Alignment explanation
Indices: 953148--953173 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
953138 TCCTGATATA
953148 TGTGGGAATTAGC
1 TGTGGGAATTAGC
953161 TGTGGGAATTAGC
1 TGTGGGAATTAGC
953174 ACAATACGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.38, T:0.31
Consensus pattern (13 bp):
TGTGGGAATTAGC
Left flanking sequence: Indices 952648 -- 953147
ATAATAATAAGAAAAAAGACCAGTCACTTAGGGTCTCTTTGGAAGGAAGGCAAGTCAGAAGGAAA
GGGAGGTTGAGAGAAAAAGGCTCTTAGAGAAGATATCTTTCATATTTACATTGAAGAACCTGGCC
TTGCCCTCCTCGACCTCGTAACCTCGGCCGAGTCGATGGCGGCTTTTTAGTCGAGCGTGCTATCG
CACCCTTCGGGCCTATTGTTGAGCAAGCAATCCTTCCTTACCTTCTAGCTAGCTCTTTGAGGGGA
AGAAAGAAGAACCTTCCCTTCTTAAAAGGTCCTTTCAGGCGGGCGGTAAGGTAGGTCCTGCTCAC
CCAGCTCACCCAGTAAGGTACTTCTCAACTCGGTCAAGTCCTGATTCCCTTCCTTATCTAACAGA
TATGATCTCAGTTTATCTAACTGTGTGAAATGAAAAGTTGGCCTTTTTGGTAAGATCAATCCTTC
GATAACGCTGCTATTATATATGTAATTATGCCTCGTCCTGATATA
Right flanking sequence: Indices 953174 -- 953673
ACAATACGTACTTCGAGTTAGTAGCATGGCGAATCATTACTTACAAGCATGTGATGTCGTCATCA
AGTGCTGTTTTCATAATTGACCAAGCGGACATATCTCTATAGAGAAGAACGTGTTTTCTTTATAA
AGGATGCTATCCCTGATTAGGTAGGAGATTTGGCCCTCCCTCCCCCAACCAATAGTCAGAGGTTA
TGCGCTTTAAAGAGTGAATCCTATGTGGGCGTTGGGCTAATTCCCCATTTACAACCCTTGACACT
TACCACTTACGGTAAAGAGAGTGTTCGCCTTGGACGGAGGTTGCGAGGCTAGTAATAAAAGTTGT
CATGGGTCGGGAAAGGTCCTTATCTTTCTTCCCGTAAACCACTTATCCATTAGGGGAATCTAGGG
CGAATCTCTTCCCTACCTCTCTAAGTGTTTCTCCCCTACAAAGTGACTTCCCCTCCCCCCTATGA
GTTCCACGCCTTTGTTGTTTCGCCCTCCCCTAGGCCGGGTGAGTG
Found at i:953903 original size:15 final size:15
Alignment explanation
Indices: 953883--953928 Score: 92
Period size: 15 Copynumber: 3.1 Consensus size: 15
953873 CCAGATCTTT
953883 TACCTCGCCAACAAC
1 TACCTCGCCAACAAC
953898 TACCTCGCCAACAAC
1 TACCTCGCCAACAAC
953913 TACCTCGCCAACAAC
1 TACCTCGCCAACAAC
953928 T
1 T
953929 CAAGTGAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.33, C:0.46, G:0.07, T:0.15
Consensus pattern (15 bp):
TACCTCGCCAACAAC
Left flanking sequence: Indices 953383 -- 953882
TGAATCCTATGTGGGCGTTGGGCTAATTCCCCATTTACAACCCTTGACACTTACCACTTACGGTA
AAGAGAGTGTTCGCCTTGGACGGAGGTTGCGAGGCTAGTAATAAAAGTTGTCATGGGTCGGGAAA
GGTCCTTATCTTTCTTCCCGTAAACCACTTATCCATTAGGGGAATCTAGGGCGAATCTCTTCCCT
ACCTCTCTAAGTGTTTCTCCCCTACAAAGTGACTTCCCCTCCCCCCTATGAGTTCCACGCCTTTG
TTGTTTCGCCCTCCCCTAGGCCGGGTGAGTGAACGGAAATGATACCCCACACTTACTTACTTACA
AAGATACGGATAGGTACATCAGAACGGAGGTAGACACGCGTAGGTACACCAGAACGAAGGTAAAT
GCGCAATGAGGTCCTGATCTTATGACCTACAACCTACACAAACATAGGTGGTGCAGTTGGTCCTC
CTTATATGTATGATTATCTCCATAGGTAGGTGCAACCAGATCTTT
Right flanking sequence: Indices 953929 -- 954428
CAAGTGAAGAAGAGCGAACTTAGGCACAGATAAGAAATCTTGTCATTTGCCCTTGGAATATTTTC
TATCGAAGTTTCCACTCGACCTTGGACTCATCACCTTCCTTATCGTCTGGCTTATAAATAGAAAA
GAATATAGAAATATAGATTTGAAGTCCCCATCTGTAGGGTTTGGCTCCCCAGGATCTTGCTTCAC
CTTTCTCTCACCGGATCTCTCACCGGAGTCAACCACCTCACCAGCTTCCCGAGAATCTGCTATTT
AGGACCCTTCCTTCCTTACTTACTTACCTTCCTCCCCGTATCTTCTCCGAATAACCCATCCGTCT
ACCCCGAATAGTTCTTACCTGGAATAGAGTTTGTGAGGCAAATAAGAAAATGTGAATGTCACTCT
GGTCCCCACCTGATGGCTCATTAACCAAAAGTAAGTGTAGCTCGACCGAACGAAGAGTCAGTGCC
CGGCCGATGGTGGCAAGTAATACCAAGACCTGCACTAACCAAGTA
Found at i:954433 original size:26 final size:26
Alignment explanation
Indices: 954397--954448 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
954387 CCGATGGTGG
954397 CAAGTAATACCAAGACCTGCACTAAC
1 CAAGTAATACCAAGACCTGCACTAAC
*
954423 CAAGTAATACCAAGACCTTCACTAAC
1 CAAGTAATACCAAGACCTGCACTAAC
954449 TAATAACTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.31, G:0.10, T:0.17
Consensus pattern (26 bp):
CAAGTAATACCAAGACCTGCACTAAC
Left flanking sequence: Indices 953897 -- 954396
CTACCTCGCCAACAACTACCTCGCCAACAACTCAAGTGAAGAAGAGCGAACTTAGGCACAGATAA
GAAATCTTGTCATTTGCCCTTGGAATATTTTCTATCGAAGTTTCCACTCGACCTTGGACTCATCA
CCTTCCTTATCGTCTGGCTTATAAATAGAAAAGAATATAGAAATATAGATTTGAAGTCCCCATCT
GTAGGGTTTGGCTCCCCAGGATCTTGCTTCACCTTTCTCTCACCGGATCTCTCACCGGAGTCAAC
CACCTCACCAGCTTCCCGAGAATCTGCTATTTAGGACCCTTCCTTCCTTACTTACTTACCTTCCT
CCCCGTATCTTCTCCGAATAACCCATCCGTCTACCCCGAATAGTTCTTACCTGGAATAGAGTTTG
TGAGGCAAATAAGAAAATGTGAATGTCACTCTGGTCCCCACCTGATGGCTCATTAACCAAAAGTA
AGTGTAGCTCGACCGAACGAAGAGTCAGTGCCCGGCCGATGGTGG
Right flanking sequence: Indices 954449 -- 954948
TAATAACTTAACTAACATACGCTTTCGTCCCCATCATATCCGCATCTCACGTCCCATAATTCACC
ATATTTCGTACCGATAAGGAGCCCAACTACCTCCCAGCGTCCCCAGCATTTCCAGCAGCTTCGTA
CTCCTCAGTAACAGCTCACGGCCCAATCAACTCCACATATCACAGCCCCATCGAGGTTCAATCTC
ACGGACCCTTCATTCTCACAGACAATTTAGATCTCTCACTTGATTGCAGCTCTCGTACCCATCAT
TCTCCCACACTACCCACCCCCTATATTTATACCATACCCGCCATTCAATCCGCACCTGCCATATT
CAATGTGGTGGGGCGCTCCAACGGAAGGATTGAAACTGACCCAAGAAAGAAGGATGAAAAGTAAG
TAAGTTACCCATAGGTTTGTGATTCCGGAAGTTACCCAGAGTTAGTTGTTCAATCCGAGTTCGCA
TTCCCACGTTCAATCCGCATTCTACCGCCCGCATAAACACACGTA
Found at i:955341 original size:14 final size:14
Alignment explanation
Indices: 955318--955384 Score: 82
Period size: 14 Copynumber: 4.8 Consensus size: 14
955308 GCTTAGAACA
*
955318 TGTTTTAAGAGCCC
1 TGTTTAAAGAGCCC
*
955332 TGTTTAAAGAG-CT
1 TGTTTAAAGAGCCC
955345 TGGTTTAAAGAGCCC
1 T-GTTTAAAGAGCCC
*
955360 TGTTCAAAGAGCCC
1 TGTTTAAAGAGCCC
*
955374 TGTTCAAAGAG
1 TGTTTAAAGAG
955385 GGTTCAAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
13 2 0.04
14 43 0.91
15 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (14 bp):
TGTTTAAAGAGCCC
Left flanking sequence: Indices 954818 -- 955317
GAAAGAAGGATGAAAAGTAAGTAAGTTACCCATAGGTTTGTGATTCCGGAAGTTACCCAGAGTTA
GTTGTTCAATCCGAGTTCGCATTCCCACGTTCAATCCGCATTCTACCGCCCGCATAAACACACGT
ACGTACACCTAGACCCTGTATCTTTAGGATACCGCCCAGGGCACGTATTCCGAGTGTGTGAGGTG
GTCACCAATTAGGGGTGATTTATTCGACTTATGGGCCATAGTAGTAGTAGTAGTTGGTGGGGTAG
GCCCAGACACTTATGGATGAGGAGATTGATGGCACACTTCATTCCCTATTCGCCCGCATTAACGC
ATTCCCAATTACACCCATTCGCTTTGAAAAGAAGGAAAGGCCTGGAGGGCAATAACAGATAGCCG
TGGAGGACGCAGAAAATAAGAAGAAGGACCTGGTGGACTAATTCTACCGCATTGAATAGTACCAG
GAGGGCAACACAGGATATCAGCATGTAGAACCTTAGCTTAGAACA
Right flanking sequence: Indices 955385 -- 955884
GGTTCAAAGAGCCTGGTTTAAAGAGCGATGGCGGCCCCCTTGTCGAGAGTTCGCTTGCTCACCCT
TGGCGAGAGATTGATGACCCATGTATCATTGAGTGGGATAAACGGGCCATACAGCGAAGTGTTCT
TTAATGGGTTAACGCCAACTGGGATGGCTGGTATAAATGCCGGTTGGGTTTGTTAGGCTGCTCTG
ATCCGATGTGCTCCGTAGGGGTGCGTGCATGTGCTTCGATCCGATGTGCTCCGATCCGATGGTTG
TTTCGACGGGCGTAGGCGCGTGTGGTTTGTCGTTGTTGCGGCTGGGAGCTTAATAGAAAGTACGT
ATTTCTCTATTGACTCGTCTAATTTCGGTAACTAGAGATAGATCGTAATTGCTGAGCTAGAAGGT
AATCACTAACCTTCCAGAGCTCTTTGAGGGGAATAAAGAGGACGTTTGAACCTACTTGAAAAACC
CATTTGATGTGATGCCGCGGCGTAATTACATATATAAATATCTAA
Found at i:955382 original size:28 final size:28
Alignment explanation
Indices: 955324--955410 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
955314 AACATGTTTT
* * *
955324 AAGAGCCCTGTTTAAAGAGCTTGGTTTA
1 AAGAGCCCTGTTCAAAGAGCCTGGTTCA
955352 AAGAGCCCTGTTCAAAGAGCCCT-GTTCA
1 AAGAGCCCTGTTCAAAGAG-CCTGGTTCA
* *
955380 AAGAG---GGTTCAAAGAGCCTGGTTTA
1 AAGAGCCCTGTTCAAAGAGCCTGGTTCA
955405 AAGAGC
1 AAGAGC
955411 GATGGCGGCC
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
24 3 0.06
25 19 0.37
28 27 0.53
29 2 0.04
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (28 bp):
AAGAGCCCTGTTCAAAGAGCCTGGTTCA
Left flanking sequence: Indices 954824 -- 955323
AGGATGAAAAGTAAGTAAGTTACCCATAGGTTTGTGATTCCGGAAGTTACCCAGAGTTAGTTGTT
CAATCCGAGTTCGCATTCCCACGTTCAATCCGCATTCTACCGCCCGCATAAACACACGTACGTAC
ACCTAGACCCTGTATCTTTAGGATACCGCCCAGGGCACGTATTCCGAGTGTGTGAGGTGGTCACC
AATTAGGGGTGATTTATTCGACTTATGGGCCATAGTAGTAGTAGTAGTTGGTGGGGTAGGCCCAG
ACACTTATGGATGAGGAGATTGATGGCACACTTCATTCCCTATTCGCCCGCATTAACGCATTCCC
AATTACACCCATTCGCTTTGAAAAGAAGGAAAGGCCTGGAGGGCAATAACAGATAGCCGTGGAGG
ACGCAGAAAATAAGAAGAAGGACCTGGTGGACTAATTCTACCGCATTGAATAGTACCAGGAGGGC
AACACAGGATATCAGCATGTAGAACCTTAGCTTAGAACATGTTTT
Right flanking sequence: Indices 955411 -- 955910
GATGGCGGCCCCCTTGTCGAGAGTTCGCTTGCTCACCCTTGGCGAGAGATTGATGACCCATGTAT
CATTGAGTGGGATAAACGGGCCATACAGCGAAGTGTTCTTTAATGGGTTAACGCCAACTGGGATG
GCTGGTATAAATGCCGGTTGGGTTTGTTAGGCTGCTCTGATCCGATGTGCTCCGTAGGGGTGCGT
GCATGTGCTTCGATCCGATGTGCTCCGATCCGATGGTTGTTTCGACGGGCGTAGGCGCGTGTGGT
TTGTCGTTGTTGCGGCTGGGAGCTTAATAGAAAGTACGTATTTCTCTATTGACTCGTCTAATTTC
GGTAACTAGAGATAGATCGTAATTGCTGAGCTAGAAGGTAATCACTAACCTTCCAGAGCTCTTTG
AGGGGAATAAAGAGGACGTTTGAACCTACTTGAAAAACCCATTTGATGTGATGCCGCGGCGTAAT
TACATATATAAATATCTAACTTGTATCCCGATATAACGTATCTAA
Found at i:955402 original size:14 final size:13
Alignment explanation
Indices: 955324--955410 Score: 70
Period size: 14 Copynumber: 6.5 Consensus size: 13
955314 AACATGTTTT
*
955324 AAGAGCCCTGTTTA
1 AAGAG-CCTGTTCA
* *
955338 AAGAGCTTGGTTTA
1 AAGAGCCT-GTTCA
955352 AAGAGCCCTGTTCA
1 AAGAG-CCTGTTCA
955366 AAGAGCCCTGTTCA
1 AAGAG-CCTGTTCA
*
955380 AAGAG--GGTTCA
1 AAGAGCCTGTTCA
*
955391 AAGAGCCTGGTTTA
1 AAGAGCCT-GTTCA
955405 AAGAGC
1 AAGAGC
955411 GATGGCGGCC
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
11 10 0.16
13 2 0.03
14 48 0.77
15 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (13 bp):
AAGAGCCTGTTCA
Left flanking sequence: Indices 954824 -- 955323
AGGATGAAAAGTAAGTAAGTTACCCATAGGTTTGTGATTCCGGAAGTTACCCAGAGTTAGTTGTT
CAATCCGAGTTCGCATTCCCACGTTCAATCCGCATTCTACCGCCCGCATAAACACACGTACGTAC
ACCTAGACCCTGTATCTTTAGGATACCGCCCAGGGCACGTATTCCGAGTGTGTGAGGTGGTCACC
AATTAGGGGTGATTTATTCGACTTATGGGCCATAGTAGTAGTAGTAGTTGGTGGGGTAGGCCCAG
ACACTTATGGATGAGGAGATTGATGGCACACTTCATTCCCTATTCGCCCGCATTAACGCATTCCC
AATTACACCCATTCGCTTTGAAAAGAAGGAAAGGCCTGGAGGGCAATAACAGATAGCCGTGGAGG
ACGCAGAAAATAAGAAGAAGGACCTGGTGGACTAATTCTACCGCATTGAATAGTACCAGGAGGGC
AACACAGGATATCAGCATGTAGAACCTTAGCTTAGAACATGTTTT
Right flanking sequence: Indices 955411 -- 955910
GATGGCGGCCCCCTTGTCGAGAGTTCGCTTGCTCACCCTTGGCGAGAGATTGATGACCCATGTAT
CATTGAGTGGGATAAACGGGCCATACAGCGAAGTGTTCTTTAATGGGTTAACGCCAACTGGGATG
GCTGGTATAAATGCCGGTTGGGTTTGTTAGGCTGCTCTGATCCGATGTGCTCCGTAGGGGTGCGT
GCATGTGCTTCGATCCGATGTGCTCCGATCCGATGGTTGTTTCGACGGGCGTAGGCGCGTGTGGT
TTGTCGTTGTTGCGGCTGGGAGCTTAATAGAAAGTACGTATTTCTCTATTGACTCGTCTAATTTC
GGTAACTAGAGATAGATCGTAATTGCTGAGCTAGAAGGTAATCACTAACCTTCCAGAGCTCTTTG
AGGGGAATAAAGAGGACGTTTGAACCTACTTGAAAAACCCATTTGATGTGATGCCGCGGCGTAAT
TACATATATAAATATCTAACTTGTATCCCGATATAACGTATCTAA
Found at i:955407 original size:25 final size:26
Alignment explanation
Indices: 955337--955411 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 26
955327 AGCCCTGTTT
* *
955337 AAAGAGCTTGGTTTAAAGAGCCCTGTTC
1 AAAGAGCCTGGTTTAAAGAG--CGGTTC
*
955365 AAAGAGCCCT-GTTCAAAGAG-GGTTC
1 AAAGAG-CCTGGTTTAAAGAGCGGTTC
955390 AAAGAGCCTGGTTTAAAGAGCG
1 AAAGAGCCTGGTTTAAAGAGCG
955412 ATGGCGGCCC
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
24 3 0.08
25 19 0.47
26 1 0.03
28 15 0.38
29 2 0.05
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (26 bp):
AAAGAGCCTGGTTTAAAGAGCGGTTC
Left flanking sequence: Indices 954837 -- 955336
AGTAAGTTACCCATAGGTTTGTGATTCCGGAAGTTACCCAGAGTTAGTTGTTCAATCCGAGTTCG
CATTCCCACGTTCAATCCGCATTCTACCGCCCGCATAAACACACGTACGTACACCTAGACCCTGT
ATCTTTAGGATACCGCCCAGGGCACGTATTCCGAGTGTGTGAGGTGGTCACCAATTAGGGGTGAT
TTATTCGACTTATGGGCCATAGTAGTAGTAGTAGTTGGTGGGGTAGGCCCAGACACTTATGGATG
AGGAGATTGATGGCACACTTCATTCCCTATTCGCCCGCATTAACGCATTCCCAATTACACCCATT
CGCTTTGAAAAGAAGGAAAGGCCTGGAGGGCAATAACAGATAGCCGTGGAGGACGCAGAAAATAA
GAAGAAGGACCTGGTGGACTAATTCTACCGCATTGAATAGTACCAGGAGGGCAACACAGGATATC
AGCATGTAGAACCTTAGCTTAGAACATGTTTTAAGAGCCCTGTTT
Right flanking sequence: Indices 955412 -- 955911
ATGGCGGCCCCCTTGTCGAGAGTTCGCTTGCTCACCCTTGGCGAGAGATTGATGACCCATGTATC
ATTGAGTGGGATAAACGGGCCATACAGCGAAGTGTTCTTTAATGGGTTAACGCCAACTGGGATGG
CTGGTATAAATGCCGGTTGGGTTTGTTAGGCTGCTCTGATCCGATGTGCTCCGTAGGGGTGCGTG
CATGTGCTTCGATCCGATGTGCTCCGATCCGATGGTTGTTTCGACGGGCGTAGGCGCGTGTGGTT
TGTCGTTGTTGCGGCTGGGAGCTTAATAGAAAGTACGTATTTCTCTATTGACTCGTCTAATTTCG
GTAACTAGAGATAGATCGTAATTGCTGAGCTAGAAGGTAATCACTAACCTTCCAGAGCTCTTTGA
GGGGAATAAAGAGGACGTTTGAACCTACTTGAAAAACCCATTTGATGTGATGCCGCGGCGTAATT
ACATATATAAATATCTAACTTGTATCCCGATATAACGTATCTAAA
Found at i:955628 original size:15 final size:15
Alignment explanation
Indices: 955608--955640 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
955598 GGGTGCGTGC
*
955608 ATGTGCTTCGATCCG
1 ATGTGCTCCGATCCG
955623 ATGTGCTCCGATCCG
1 ATGTGCTCCGATCCG
955638 ATG
1 ATG
955641 GTTGTTTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.30
Consensus pattern (15 bp):
ATGTGCTCCGATCCG
Left flanking sequence: Indices 955108 -- 955607
GGCACACTTCATTCCCTATTCGCCCGCATTAACGCATTCCCAATTACACCCATTCGCTTTGAAAA
GAAGGAAAGGCCTGGAGGGCAATAACAGATAGCCGTGGAGGACGCAGAAAATAAGAAGAAGGACC
TGGTGGACTAATTCTACCGCATTGAATAGTACCAGGAGGGCAACACAGGATATCAGCATGTAGAA
CCTTAGCTTAGAACATGTTTTAAGAGCCCTGTTTAAAGAGCTTGGTTTAAAGAGCCCTGTTCAAA
GAGCCCTGTTCAAAGAGGGTTCAAAGAGCCTGGTTTAAAGAGCGATGGCGGCCCCCTTGTCGAGA
GTTCGCTTGCTCACCCTTGGCGAGAGATTGATGACCCATGTATCATTGAGTGGGATAAACGGGCC
ATACAGCGAAGTGTTCTTTAATGGGTTAACGCCAACTGGGATGGCTGGTATAAATGCCGGTTGGG
TTTGTTAGGCTGCTCTGATCCGATGTGCTCCGTAGGGGTGCGTGC
Right flanking sequence: Indices 955641 -- 956140
GTTGTTTCGACGGGCGTAGGCGCGTGTGGTTTGTCGTTGTTGCGGCTGGGAGCTTAATAGAAAGT
ACGTATTTCTCTATTGACTCGTCTAATTTCGGTAACTAGAGATAGATCGTAATTGCTGAGCTAGA
AGGTAATCACTAACCTTCCAGAGCTCTTTGAGGGGAATAAAGAGGACGTTTGAACCTACTTGAAA
AACCCATTTGATGTGATGCCGCGGCGTAATTACATATATAAATATCTAACTTGTATCCCGATATA
ACGTATCTAAATAATAGCTCCAAGGTGAGGTTCAAAATCAAACTAAAAAGGCATTTGAGAGGAGG
TTGATCCATGAAAACGGAAGGGGTTTCTCGATCCTATCCATGAGCTTTCCATCTTTCCCTTGTAT
CCCGAATCCCGGAAGAACTCTAGACTTACTACTCAATGAAAAGGCTTCGTTAGAAGTAAGATCAA
GAAGAAGGTGAGTAAAGACTGCGTCCCTGAACCCACTCAAAGTGT
Found at i:957924 original size:13 final size:13
Alignment explanation
Indices: 957906--957930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
957896 ACTAAGCTAA
957906 GGTGGAACTCATT
1 GGTGGAACTCATT
957919 GGTGGAACTCAT
1 GGTGGAACTCAT
957931 CCTAACAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (13 bp):
GGTGGAACTCATT
Left flanking sequence: Indices 957406 -- 957905
TGTCCTCGAGCGTGGTGGATGTTATAAGGAAAGGAGTGAAACCGGAAGGTCCCGGAGGGGCTTGC
GCTTCTTAGGGCAAGGAATTCAACACCCGGTAGGGGCTTGCTTGACGCTAGGAAAGCAAGGACCC
GTTAGGGGGCTCACTATTCATATGGTGAGGGTGAGCCTGCCGAACTCTCGACCAACGCCTTTTAG
TTACTTATTTGAGAGCCCAATAAGTAAATTGAAATTATATATGTCATTACGCTTTAAGGCTCAAC
CATCCGTACGGGGAGAAGAAAGACTAGTTCGTGTCTCCTTGACTATAAGGTAAGACCCCAAACAG
ATATTGCTGCTCGGCGAAGGTGAGGGTTTAACCCCAACAAAGTGTATTATAATAGGCGGATCATG
GGCTCGACCGGAAGGAAGATCCCATCCTGGCCTCTTAACTCCTACTATTTGGGTATGAAACTAAC
TAACAATGTATGGGGAAGGTAAGCATTCTTATTCAACTAAGCTAA
Right flanking sequence: Indices 957931 -- 958430
CCTAACAAATCGGGGAACTAACGAACTCATGCAGACTAACGAACTCATGCAGCTCATCCTAACTC
ATCGGGGAACAAGTCGGATATTCTCTTTGGGTAGATGTTTAGTTATAAGTAGGAGCACTGTTAGA
GTGCCCTCCCAAGAAACGAGCAATATATATAGACCATGCCTACCTTACCGACCTCCTTTCTAAAC
TCGTCCTAGGCGTCTAGGAAAGGAAAGGCAGACCTGAGAGAACGCTGTTGGGCAGACGAGACTAC
CGGGTGGATGGGGATGGATCACCTTACCGACTTTATTCACTGCCGAAACCCTAGGAGACATGGAG
GGACAATCATGCCCAACCTCTTCTTAAGCCAGGAGCACCTTGTAGGGTAGACACTATGAACTCCC
TGGTTTCCACCAAACAACCTGTCCACCTGAAGATATAGACCTGTTATACCTAGTAACACTTGAAT
GAATCGCTTTATGGCTACTCACTATATACCTGAAATTTGATATTA
Found at i:957970 original size:18 final size:18
Alignment explanation
Indices: 957947--957982 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
957937 AAATCGGGGA
957947 ACTAACGAACTCATGCAG
1 ACTAACGAACTCATGCAG
957965 ACTAACGAACTCATGCAG
1 ACTAACGAACTCATGCAG
957983 CTCATCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17
Consensus pattern (18 bp):
ACTAACGAACTCATGCAG
Left flanking sequence: Indices 957447 -- 957946
CCGGAAGGTCCCGGAGGGGCTTGCGCTTCTTAGGGCAAGGAATTCAACACCCGGTAGGGGCTTGC
TTGACGCTAGGAAAGCAAGGACCCGTTAGGGGGCTCACTATTCATATGGTGAGGGTGAGCCTGCC
GAACTCTCGACCAACGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTAAATTGAAATTATATA
TGTCATTACGCTTTAAGGCTCAACCATCCGTACGGGGAGAAGAAAGACTAGTTCGTGTCTCCTTG
ACTATAAGGTAAGACCCCAAACAGATATTGCTGCTCGGCGAAGGTGAGGGTTTAACCCCAACAAA
GTGTATTATAATAGGCGGATCATGGGCTCGACCGGAAGGAAGATCCCATCCTGGCCTCTTAACTC
CTACTATTTGGGTATGAAACTAACTAACAATGTATGGGGAAGGTAAGCATTCTTATTCAACTAAG
CTAAGGTGGAACTCATTGGTGGAACTCATCCTAACAAATCGGGGA
Right flanking sequence: Indices 957983 -- 958482
CTCATCCTAACTCATCGGGGAACAAGTCGGATATTCTCTTTGGGTAGATGTTTAGTTATAAGTAG
GAGCACTGTTAGAGTGCCCTCCCAAGAAACGAGCAATATATATAGACCATGCCTACCTTACCGAC
CTCCTTTCTAAACTCGTCCTAGGCGTCTAGGAAAGGAAAGGCAGACCTGAGAGAACGCTGTTGGG
CAGACGAGACTACCGGGTGGATGGGGATGGATCACCTTACCGACTTTATTCACTGCCGAAACCCT
AGGAGACATGGAGGGACAATCATGCCCAACCTCTTCTTAAGCCAGGAGCACCTTGTAGGGTAGAC
ACTATGAACTCCCTGGTTTCCACCAAACAACCTGTCCACCTGAAGATATAGACCTGTTATACCTA
GTAACACTTGAATGAATCGCTTTATGGCTACTCACTATATACCTGAAATTTGATATTAGCAGGTC
GGGAGATCAATTGTATGAGCGAGCTTGGAATGGATGGGATGCGTG
Found at i:963618 original size:14 final size:14
Alignment explanation
Indices: 963599--963626 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
963589 ATGGTTGGGG
963599 CACATATTCTGTTT
1 CACATATTCTGTTT
963613 CACATATTCTGTTT
1 CACATATTCTGTTT
963627 GAAAGCTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (14 bp):
CACATATTCTGTTT
Left flanking sequence: Indices 963099 -- 963598
CATTGCTAGGATATGCTTCCCTTTCATTTTAGTACCTCTTATAACCAACCAACTCTTCTAGTTAC
CCACCTATATTTACTGCCTGCCTCACTTAACCCACTTAGGAATACCCCAATAGCGAGCGAGTGTT
GGATCGGATCGGATCGGATGGGATGGATGGAAGGGCTTCACATGGAGGGAGAGAGCATTGGTCAA
GGGCGTTCGGATAGATACAGCAACCTGCAAGAACCAACACTGAATTATAACAGATTCTTACTTTG
GTACCACTATGAATACCGAAACGCCACTAGTGGAAGAAAGAGGTTCTTTAGCCTAGATTAAGCTA
GAAATCAATATCTATTTTTATGCCAAATAGAGATAGATCGCTTCTATACGTGATAGTTTATTGGT
TTCGGAAAGCAATAAATCCCGTTTTCGACATAATTATATCACCGGATGAACGATCCAGGATGAAT
GGTCGCGGCCATATAGCCATCTATTTTCACCCCGCATGGTTGGGG
Right flanking sequence: Indices 963627 -- 964126
GAAAGCTATCTTCATCCCTAAGAAGGCTAAGGATCTCATATTGAATGGAGTGCACATCCCGCTGA
GGGACCCATATCCACGCCGCAAGGCTAAGGAAATTAGGGACATAAGGCCATCTATGAAAGGAAAA
AGGTATTGGATCATCGGTCGGATCAAAGCCTGGGAAAGGTAATAAATTATTGATTGGATCAAAGC
CGAGCAACGGATCGGCGACAGATCTCCTTACCCTATTGCATTTCCTGGATCTATCTCTTGCAGGA
TATCCCTATGGATAAGTGGTATATGTCCATTATTCGTTTCTGATCTAGAATACGAAAAGGTAGGT
AGGTGTTTCCATGGCATATAAGCGGCATAGAATTATGTGTTTCATATAAACATGTTTTGGCTGAA
ACAGATTCCACCCACCCTATATTCCTTCTAGGATCCCTACCAATTTGTATGTGTGAGGTCCTCCG
AACGTATAGGCTTTTCCGGATCGGGTAATCTATATTGGAAATAAC
Found at i:965768 original size:26 final size:26
Alignment explanation
Indices: 965694--965768 Score: 114
Period size: 26 Copynumber: 2.9 Consensus size: 26
965684 CCAGTAAGTG
* * *
965694 ATCATACTTACATGGCTCTTAGAGCT
1 ATCATACCTCCATGGCTCTTAGGGCT
*
965720 GTCATACCTCCATGGCTCTTAGGGCT
1 ATCATACCTCCATGGCTCTTAGGGCT
965746 ATCATACCTCCATGGCTCTTAGG
1 ATCATACCTCCATGGCTCTTAGG
965769 ATAATCATTC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (26 bp):
ATCATACCTCCATGGCTCTTAGGGCT
Left flanking sequence: Indices 965194 -- 965693
AGGGAACCGTAGGGATGGAGGTTGGGATGAGAGATAAGTGAATCTATGCCACCCCTACGAAGGAT
GATCAAGTGATTGACAAATATGATAGTCAATGTGTTTTCCTACCACATGATTGAAGGGATGATGT
CCTCGAGGATGCGCAAGCAGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGA
GGAGAGGACAATTTTGCTCAAAATCAAACTTGAACTGGTGCACTTTCCTAATCTATTTTCCTCTC
CAATCGAAGGCTATCTTAACTCCGTCTCATGCTTCTTATATAACTAGTAAGTAAGTGGTCATACC
CCCATAACTCTTAGGGTAAGCATCCCCATATAGCTTCCAGGGCAGTCATTTCCCTATAGCTCCCT
AGCTAATAACCCTGTAATATCTCCATAGATCTCAGGACAGTCATCCCTCTTAAGGGCAGTCATAC
CCCTATAAACCTGTCATATCTCTATAGCTCCCTAGCCAGTAAGTG
Right flanking sequence: Indices 965769 -- 966268
ATAATCATTCCCCTATAAATCTAAGGGTGGTTATCCCCTATAGCTTTCAGGGTGGTCATACCTCC
ATGGCTCTTCTTAGGACGGTTATACTCCTATAGCTCTTAAGACGGTCATACCTACATGGCTTTTA
AGACAATCATTCCCCCATAACTCTAAGGGTGGTCATCACTCTCAGGACTGTCATATCCCTGCTCT
CAAGGTGGGAAAACCCCTATAAATCTTAAGGGTGGTCCATCTATATCCATAGCTCTATTATCCCC
CCACAGCTATCAGGGCAGTCATATCTCCATAGCTCTCAGGACGGGCCATCTCTCCATAGCTCTTA
GGCTTGTAAATCCTCTATTGCTTTCAGCTAACCACTCCTTAGTGGGAGGGAATCCAAGGTCCCGG
AGGGGCTTGCGCTTCCTAGTGCAAGGGAATATTCACTGCTCTAGGGTTACGTTACCTGGTATGCG
AACCTTAACATCGATGACTTCGTAGTTCGTAGAGGGAAAACAGGC
Found at i:968142 original size:26 final size:25
Alignment explanation
Indices: 968106--968157 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
968096 GTAAACCCTA
968106 ACCTTTAGGTGCTCGACTGATTAAGG
1 ACCTTTAGGTGCTCGACTG-TTAAGG
968132 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGTTAAGG
968157 A
1 A
968158 TGCGTAAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGTTAAGG
Left flanking sequence: Indices 967606 -- 968105
CGAATCCAATCACCGTACTTCTCTGAATGAGAAGTCAAACTTCCCTAACCTCCGCCTCCTGAAAA
TGCTATAATAGTAGGGGAATCTTGAAAAACCTCCGCCAAGGATGCGTAAGCAGGCTCGACTGATA
ACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCT
CCGATGGTTAAGGATTTGCGTAAGCAGGCTCGACTGATAACCCCCCAACCAATAAGTTAAAACCC
TAAACCTTTAGGTCTCGATGAGAGACCTTTGGTGCTCGACTTGTTTAAGGAGAGGAGAGGATGCC
AAGCATTGCTTCTGATGTAAACCCCCCAAACCAATAAGTTAAACCCTAACCGTTATGCTCACCAT
AGCCTTTATCTCGACCCATAGGGACCTTTTAGGTGCTCACCTTAAGGAGAGGCGAGAGGATGCGT
AAGCAGGTCGACTGATAACCCCCCAAACCAATTAAGTAAACCCTA
Right flanking sequence: Indices 968158 -- 968657
TGCGTAAGCAGGCTGCGACTGATAAACCCCCCAAACTAATTAAGTAAACCCTAACCTTTAGTGTG
CTCGACTGATAAGGACTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGATGCGCAAGCATTGAC
CTCGACTTTAACCCCCCAACCAATAAAGTAAACCCTAACCCTTTAGGTGCTCGGACCCAGGGTTT
GACTTATTGGGTGGGGCAATAAGTAAACCAGAGGAGAGGTATGCGTAAGCAGGCTCGGACTTGTG
AAACCCCCAACCCAATAAGTAAAACCCTTAACCTTAGGTGCTCGACCCCTTAACGACCTTAAGGG
AGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCATCATGAGACTAGGACCTGCG
CCATCTAGACTCTTGGGCTCCTCAGGGCGCTCGCCTGATAAGGACCTTTAGGTGCTCGACCCAGG
GTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGA
Found at i:968199 original size:105 final size:101
Alignment explanation
Indices: 968052--968261 Score: 359
Period size: 105 Copynumber: 2.0 Consensus size: 101
968042 GAGAGGCGAG
968052 AGGATGCGTAAGCAGGTCGACTGATAACCCCCCAAACCAATTAAGTAAACCCTAACCTTTAG-GT
1 AGGATGCGTAAGCAGGTCGACTGATAACCCCCCAAACCAATTAAGTAAACCCTAACCTTTAGTGT
968116 GCTCGACTGATTAAGGACCTTTAGGTGCTCGACTGTTA
66 GCTCGACTGA-TAAGGA-CTTTAGGTGCTCGACTGTTA
*
968154 AGGATGCGTAAGCAGGCTGCGACTGATAAACCCCCCAAACTAATTAAGTAAACCCTAACCTTTAG
1 AGGATGCGTAAGCAGG-T-CGACTGAT-AACCCCCCAAACCAATTAAGTAAACCCTAACCTTTAG
968219 TGTGCTCGACTGATAAGGACTTTAGGTGCTCGACTGTTA
63 TGTGCTCGACTGATAAGGACTTTAGGTGCTCGACTGTTA
968258 AGGA
1 AGGA
968262 GAGGGAGAGG
Statistics
Matches: 103, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
102 16 0.16
103 1 0.01
104 32 0.31
105 42 0.41
106 12 0.12
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (101 bp):
AGGATGCGTAAGCAGGTCGACTGATAACCCCCCAAACCAATTAAGTAAACCCTAACCTTTAGTGT
GCTCGACTGATAAGGACTTTAGGTGCTCGACTGTTA
Left flanking sequence: Indices 967552 -- 968051
GTTAGAGGCTTCCAGTCATTCATGAGATATATTATATATGTAATTACGCTTTCTCGAATCCAATC
ACCGTACTTCTCTGAATGAGAAGTCAAACTTCCCTAACCTCCGCCTCCTGAAAATGCTATAATAG
TAGGGGAATCTTGAAAAACCTCCGCCAAGGATGCGTAAGCAGGCTCGACTGATAACCCCCCAAAC
CAATAAGTAAACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCCGATGGTTAA
GGATTTGCGTAAGCAGGCTCGACTGATAACCCCCCAACCAATAAGTTAAAACCCTAAACCTTTAG
GTCTCGATGAGAGACCTTTGGTGCTCGACTTGTTTAAGGAGAGGAGAGGATGCCAAGCATTGCTT
CTGATGTAAACCCCCCAAACCAATAAGTTAAACCCTAACCGTTATGCTCACCATAGCCTTTATCT
CGACCCATAGGGACCTTTTAGGTGCTCACCTTAAGGAGAGGCGAG
Right flanking sequence: Indices 968262 -- 968761
GAGGGAGAGGATGCGCAAGCATTGACCTCGACTTTAACCCCCCAACCAATAAAGTAAACCCTAAC
CCTTTAGGTGCTCGGACCCAGGGTTTGACTTATTGGGTGGGGCAATAAGTAAACCAGAGGAGAGG
TATGCGTAAGCAGGCTCGGACTTGTGAAACCCCCAACCCAATAAGTAAAACCCTTAACCTTAGGT
GCTCGACCCCTTAACGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGA
CCCTCATCATGAGACTAGGACCTGCGCCATCTAGACTCTTGGGCTCCTCAGGGCGCTCGCCTGAT
AAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGG
AGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGA
TGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
Found at i:968249 original size:24 final size:25
Alignment explanation
Indices: 968213--968261 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
968203 AAACCCTAAC
968213 CTTTAGTGTGCTCGACTGATAAGGA
1 CTTTAGTGTGCTCGACTGATAAGGA
*
968238 CTTTAG-GTGCTCGACTGTTAAGGA
1 CTTTAGTGTGCTCGACTGATAAGGA
968262 GAGGGAGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (25 bp):
CTTTAGTGTGCTCGACTGATAAGGA
Left flanking sequence: Indices 967713 -- 968212
TGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCG
ACTGATAAGGACCTTTAGGTGCTCCGATGGTTAAGGATTTGCGTAAGCAGGCTCGACTGATAACC
CCCCAACCAATAAGTTAAAACCCTAAACCTTTAGGTCTCGATGAGAGACCTTTGGTGCTCGACTT
GTTTAAGGAGAGGAGAGGATGCCAAGCATTGCTTCTGATGTAAACCCCCCAAACCAATAAGTTAA
ACCCTAACCGTTATGCTCACCATAGCCTTTATCTCGACCCATAGGGACCTTTTAGGTGCTCACCT
TAAGGAGAGGCGAGAGGATGCGTAAGCAGGTCGACTGATAACCCCCCAAACCAATTAAGTAAACC
CTAACCTTTAGGTGCTCGACTGATTAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGTAAGCA
GGCTGCGACTGATAAACCCCCCAAACTAATTAAGTAAACCCTAAC
Right flanking sequence: Indices 968262 -- 968761
GAGGGAGAGGATGCGCAAGCATTGACCTCGACTTTAACCCCCCAACCAATAAAGTAAACCCTAAC
CCTTTAGGTGCTCGGACCCAGGGTTTGACTTATTGGGTGGGGCAATAAGTAAACCAGAGGAGAGG
TATGCGTAAGCAGGCTCGGACTTGTGAAACCCCCAACCCAATAAGTAAAACCCTTAACCTTAGGT
GCTCGACCCCTTAACGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGA
CCCTCATCATGAGACTAGGACCTGCGCCATCTAGACTCTTGGGCTCCTCAGGGCGCTCGCCTGAT
AAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGG
AGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGA
TGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
Found at i:968684 original size:23 final size:23
Alignment explanation
Indices: 968654--968697 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
968644 CCAAGAGGAG
968654 AGGACCTTTAGGTGCTCGACCAT
1 AGGACCTTTAGGTGCTCGACCAT
968677 AGGACCTTTAGGTGCTCGACC
1 AGGACCTTTAGGTGCTCGACC
968698 TTAAGGGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
AGGACCTTTAGGTGCTCGACCAT
Left flanking sequence: Indices 968154 -- 968653
AGGATGCGTAAGCAGGCTGCGACTGATAAACCCCCCAAACTAATTAAGTAAACCCTAACCTTTAG
TGTGCTCGACTGATAAGGACTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGATGCGCAAGCAT
TGACCTCGACTTTAACCCCCCAACCAATAAAGTAAACCCTAACCCTTTAGGTGCTCGGACCCAGG
GTTTGACTTATTGGGTGGGGCAATAAGTAAACCAGAGGAGAGGTATGCGTAAGCAGGCTCGGACT
TGTGAAACCCCCAACCCAATAAGTAAAACCCTTAACCTTAGGTGCTCGACCCCTTAACGACCTTA
AGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCATCATGAGACTAGGACC
TGCGCCATCTAGACTCTTGGGCTCCTCAGGGCGCTCGCCTGATAAGGACCTTTAGGTGCTCGACC
CAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
Right flanking sequence: Indices 968698 -- 969197
TTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGT
GAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCG
ACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTC
GACTGTTAAGGAGAGGGAGAGGGAGAGGAGAGGATGCGGAGCACGCTCGACCAGCCTTTAGTTAC
TTATTTGAGAGCCCAATAAGTCAATTGAACTTGAATCCAATTCATTGGCTGCCGTAATGACATAT
ATAATGAGAGTGATTTCCTAGCTAGAGAGAAGAAAGACCAGTCATTGTTATGGTGGTAGTGAAAG
AGAAAGCTTCGTAGCGTAGCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACA
CCCTAGCTCTCAAGCTCGGAGGGAATTAGCTCTAACGGAGTGTTG
Found at i:968717 original size:222 final size:222
Alignment explanation
Indices: 968471--968895 Score: 678
Period size: 222 Copynumber: 1.9 Consensus size: 222
968461 GACCCCTTAA
*
968471 CGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCATCATGA-G
1 CGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCAT-ATG
* ** * * * *
968535 ACTAG-GACCTG-CGCCATCTAGACTCTTGGGCTCC-TCAGGGCGCTCGCCTGATAAGGACCTTT
65 AATAGTGA-CTGAC-CCATAAAGAATATAGGGC-CCTTCAGGGCGCTCGACTGATAAGGACCTTT
968597 AGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTT
127 AGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTT
968662 TAGGTGCTCGACCATAGGACCTTTAGGTGCT
192 TAGGTGCTCGACCATAGGACCTTTAGGTGCT
968693 CGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGA
1 CGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGA
* * * *
968758 ATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGT
66 ATAGTGACTGACCCATAAAGAATATAGGGCCCTTCAGGGCGCTCGACTGATAAGGACCTTTAGGT
968823 GCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGG
131 GCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGG
968888 TGCTCGAC
196 TGCTCGAC
968896 TGTTAAGGAG
Statistics
Matches: 187, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
221 3 0.02
222 181 0.97
223 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (222 bp):
CGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGA
ATAGTGACTGACCCATAAAGAATATAGGGCCCTTCAGGGCGCTCGACTGATAAGGACCTTTAGGT
GCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGG
TGCTCGACCATAGGACCTTTAGGTGCT
Left flanking sequence: Indices 967971 -- 968470
AAACCCTAACCGTTATGCTCACCATAGCCTTTATCTCGACCCATAGGGACCTTTTAGGTGCTCAC
CTTAAGGAGAGGCGAGAGGATGCGTAAGCAGGTCGACTGATAACCCCCCAAACCAATTAAGTAAA
CCCTAACCTTTAGGTGCTCGACTGATTAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGTAAG
CAGGCTGCGACTGATAAACCCCCCAAACTAATTAAGTAAACCCTAACCTTTAGTGTGCTCGACTG
ATAAGGACTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGATGCGCAAGCATTGACCTCGACTT
TAACCCCCCAACCAATAAAGTAAACCCTAACCCTTTAGGTGCTCGGACCCAGGGTTTGACTTATT
GGGTGGGGCAATAAGTAAACCAGAGGAGAGGTATGCGTAAGCAGGCTCGGACTTGTGAAACCCCC
AACCCAATAAGTAAAACCCTTAACCTTAGGTGCTCGACCCCTTAA
Right flanking sequence: Indices 968896 -- 969395
TGTTAAGGAGAGGGAGAGGGAGAGGAGAGGATGCGGAGCACGCTCGACCAGCCTTTAGTTACTTA
TTTGAGAGCCCAATAAGTCAATTGAACTTGAATCCAATTCATTGGCTGCCGTAATGACATATATA
ATGAGAGTGATTTCCTAGCTAGAGAGAAGAAAGACCAGTCATTGTTATGGTGGTAGTGAAAGAGA
AAGCTTCGTAGCGTAGCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACACCC
TAGCTCTCAAGCTCGGAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCT
CAAAGTTCTTAGAGTTCAGGCGCTTTGCCGAAACTTGATTGATTCGATCTCTCAAAATAGCATAA
TGACATATATAAGATATGCATGATCTGCTAAAGCGTAATTACCTATCTCATTCAGGCAGGAAGAT
CGTCATGAATTCGATCATGACCGTAATGACATATATAATATATGA
Found at i:969634 original size:27 final size:27
Alignment explanation
Indices: 969597--969655 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
969587 TAGTGAGTGA
969597 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
969624 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
969651 CCCCT
1 CCCCT
969656 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 969097 -- 969596
CGTAGCGTAGCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACACCCTAGCTC
TCAAGCTCGGAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGT
TCTTAGAGTTCAGGCGCTTTGCCGAAACTTGATTGATTCGATCTCTCAAAATAGCATAATGACAT
ATATAAGATATGCATGATCTGCTAAAGCGTAATTACCTATCTCATTCAGGCAGGAAGATCGTCAT
GAATTCGATCATGACCGTAATGACATATATAATATATGAATATTAAGGCTGCCGGCATTCGAAAG
GCCCCATATGACTTAGGGGCGGGGCAACCCCAGCCGCCTATGTGCCAGGGATCAATCCTCTCCCG
GTGGTCGAGCCTGCTTACGCATCCTCTTATTTCATCAAAGCTATACTTCATCGAAGCGTACTCAC
TATTGGAAAGTACGGAGAATCCCTCACCATCGGAATAGTGAGTGA
Right flanking sequence: Indices 969656 -- 970155
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAAC
CAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGT
AAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTTCGATTCGATCGAA
TAGTTGTAATTTCTTCTATTCCTATCGAAAATGTCTGCTTGCAGAAACGATTTGATTATATCCAT
GACTCCTTGATCATCTATACAGGATTGAACTGCGGCCAACAACTTGTTATGAGTGAGGTTATCAT
AACATTTCACTATATCCGCTCCTATGAATCGATCAACAGGTCCCCAATCTTTCACATCCATGAAT
AGGGTTTCCACGCTACGCTTCTTACGGAACCCATGCGAGCTCGTC
Found at i:969665 original size:27 final size:27
Alignment explanation
Indices: 969607--969677 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
969597 CCCCTCTCCT
*** *
969607 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
969634 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
969661 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
969678 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 969107 -- 969606
CCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACACCCTAGCTCTCAAGCTCGG
AGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGTTCTTAGAGTT
CAGGCGCTTTGCCGAAACTTGATTGATTCGATCTCTCAAAATAGCATAATGACATATATAAGATA
TGCATGATCTGCTAAAGCGTAATTACCTATCTCATTCAGGCAGGAAGATCGTCATGAATTCGATC
ATGACCGTAATGACATATATAATATATGAATATTAAGGCTGCCGGCATTCGAAAGGCCCCATATG
ACTTAGGGGCGGGGCAACCCCAGCCGCCTATGTGCCAGGGATCAATCCTCTCCCGGTGGTCGAGC
CTGCTTACGCATCCTCTTATTTCATCAAAGCTATACTTCATCGAAGCGTACTCACTATTGGAAAG
TACGGAGAATCCCTCACCATCGGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 969678 -- 970177
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTA
CGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTAAGAAATATAGGGTGAGGTAAC
GAACGCTCGACCCCCGGGAGAGGGCCCTTTCGATTCGATCGAATAGTTGTAATTTCTTCTATTCC
TATCGAAAATGTCTGCTTGCAGAAACGATTTGATTATATCCATGACTCCTTGATCATCTATACAG
GATTGAACTGCGGCCAACAACTTGTTATGAGTGAGGTTATCATAACATTTCACTATATCCGCTCC
TATGAATCGATCAACAGGTCCCCAATCTTTCACATCCATGAATAGGGTTTCCACGCTACGCTTCT
TACGGAACCCATGCGAGCTCGTCAAAAAGGTATGACGTAAGAGGT
Found at i:970834 original size:37 final size:37
Alignment explanation
Indices: 970784--970857 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
970774 ACAGTCTAGG
970784 CTAGCAAGGGATACACTCACACTCCTATAAAGGAATT
1 CTAGCAAGGGATACACTCACACTCCTATAAAGGAATT
970821 CTAGCAAGGGATACACTCACACTCCTATAAAGGAATT
1 CTAGCAAGGGATACACTCACACTCCTATAAAGGAATT
970858 GAAGGAGGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (37 bp):
CTAGCAAGGGATACACTCACACTCCTATAAAGGAATT
Left flanking sequence: Indices 970284 -- 970783
ATGCATTTCATTGAACTTGAAGGACTTAATAAGGAGAGTTTCCATTATCTCTATGGCTTGAGGTT
CAGAGATCTCATATTTACTTTCATGCTCGCGGAACAATAAGATAACACGAGCGGCAACATGGGGA
AGTATATCCGTGAATCGTCCGTCCTCCGCTATCCTATAATTAATAGCTGGTTTATTCATAGCTTT
CTTTTTCTTGCTATTAATGTTAGCCTTCGTATGATCATGAAATGCGGCGTACCTTATATACCCAT
GACCCTTCGAACCAGGAAACTCCATTACAAACTTATGGTTCCCCAAGTTGAACCTAGGTGAATTC
ATTCGGTTTCACCGTGTTTGCATAGGTTCGTGGACAGATTGACATTCACTGCTGAGAGAGATACA
CTGGCCATGCACGGACAGATATCATCATCCCATCCATTCAATGCATCCTTCCATCCATGGGATCT
AGGCTTCCACTAACAGAGCGGAGGAGGGAGGGAATACAGTCTAGG
Right flanking sequence: Indices 970858 -- 971357
GAAGGAGGGATAGACCTATAACTATCAACGAATGGAATGAATGAAGCACATCTATGCTCTGTACA
CTGCTATCACGGGATGGATGGAAGGAGGGAGATACTATCACTATAAACGAATGAGGGATATACGA
ATGGTTACACAGCTACAGAGTGGGGATGGATTCTCACCCCCTCCCGAACAAATGAGAGGATACAT
TGTTGGTGGCCACAACTCCTATGAGTGGAGGTCCATATCTGTGTGCTGGGATACTAATTCGTATG
CGAGGAATGCATTTCATAGTGATAGCCCGGGTGATAGCTGCATCTGATGAGGTGAGGGGCCTCGA
TTCTTATTGATTCCGATCATTCATAATACCAATCATAGATTCTTATGACTAGTGCCTCGGGATGG
ATCATCATTATCAATGTTGTTCTGGGGACTCTATTTTGAATTAGAACATAGTTAGAATTCCTTAC
ACCATAGGCCCTGAACTACGTGATGGGCATATTGTTTCAAATAAC
Found at i:974253 original size:15 final size:15
Alignment explanation
Indices: 974229--974258 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
974219 AAGGGTGCGA
*
974229 GCTTGTGGGTAGCTC
1 GCTTGAGGGTAGCTC
974244 GCTTGAGGGTAGCTC
1 GCTTGAGGGTAGCTC
974259 TCGTTTGAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.20, G:0.40, T:0.30
Consensus pattern (15 bp):
GCTTGAGGGTAGCTC
Left flanking sequence: Indices 973729 -- 974228
TCTTCGAAGGATGGCTGCTTCCAAGCCCACCTGGAAGATAACTTCTCACAACCCTTTGATACTAC
ATACATTCAAACTCATCAGGCAGAGTCCTGGTACATCTTCTATTTAGCTTAGTCTTCGGACTGAA
CTGACCACCACACTGTGAATACTACTCCCGCCTTGGGTCAGAAAGCGTAGTAATTGGTATAGAAG
GATGGCTATAGCTACTAATTTGACATCAGGCAGATATCTAATCTACCTACAACTTGAGCTGAGCT
TGATTCAGTTTCCGAAGGTATTCCCACACTGGCTCGGCTTAAGTAAGAAATATAGTATAGTAGTG
TAGTATCCCCTTTGCTTCGCCAACAACAGAGCATCAGCCTGAACGTTCAACATGGCCCCCTCTCT
ATATACGCAATAGAGGAAGGCCTTTTCCGGAATCAGAGTGAGAAAGGGAAGTGAAAGTGGGGCAG
TGAAATAGATTTGAAGGAATAGAAATATGGAAGTGAAGGGTGCGA
Right flanking sequence: Indices 974259 -- 974758
TCGTTTGAGGGTCTTTTTTCTCCTCGCTCGAAGAGCCACAGGCGGGATATTTATTACCAGAAATA
AGGAGTTATTCGAGAGCTGCTGGCTGGGATGAAGTACCGCTGCTTCCCCGGCCCATGCCAATAGA
GATTATGCTTGTTTATTGATATAGCCATTTGTCGCCAACCCCATGGAATCGGGCCCGATGCGCCC
CCTCCTACGTACGAAAGCCCTAAGGCGATCCTCATCCTGCCTGCGGTGGAGACTGAGCCGGCCGT
CTTTCCCTACTATGTATTTCCACGAAGGGGAGGCGCTTTCCCTCGCTTGTAAACCCCGGCCCGTG
TAGAAGATAGGTCCGTTGGCATCTGTAGCCGCCGCGGTCACTGTATTTACCCTAATCACCAACCA
GAAATCAGGAGTGATGAGCCTTTTGATGATCCATAGTAGGTGGTCCCGAATCTGCACCTTAATCA
ATCCGCACCCGAAGTCGCCGCCATGAAATGGATATTCTTGTAGCC
Found at i:976579 original size:32 final size:32
Alignment explanation
Indices: 976486--976685 Score: 339
Period size: 32 Copynumber: 6.2 Consensus size: 32
976476 GTCCTGGTAA
976486 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
1 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
* * *
976518 ACCCTCACCATATGAATAGT-GAGTGTGCTTACGC
1 ACCCTCTCC---TGGACAGTCGAGTGTGCTTACGC
976552 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
1 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
976584 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
1 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
976616 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
1 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
976648 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
1 ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
976680 ACCCTC
1 ACCCTC
976686 ACCATATGAA
Statistics
Matches: 158, Mismatches: 6, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
31 6 0.04
32 124 0.78
34 22 0.14
35 6 0.04
ACGTcount: A:0.17, C:0.34, G:0.23, T:0.25
Consensus pattern (32 bp):
ACCCTCTCCTGGACAGTCGAGTGTGCTTACGC
Left flanking sequence: Indices 975986 -- 976485
AATATTTCTAGCAGGAAAATTCGGTCACGTAGATCTCCCATTTTGCCAGAATCTGTTGATTGCTT
TGTACAAATTTATAACGGAAAAACTCCTGCTCGTTGCAAGATCACTGAAGGAAAGGTTGGGCATA
AATCTGGAGAGTTTGCCTCTGCACGGAAACGAAAACCTCCGAGAACCTATATCGGGCCGGGGAGA
AAGGGGAAAAGGTAAAATACGGCACGAAAAGTCAATCCGATTTCAGTCAGACTGAATCTGAATCG
TAGTTCAGATCCAAGTCGGTTTAGTGAGGGCGACCGCGAAAGTCACCGAGTGAATTGCCCTTTCG
TATGGATAGATAGGGGGACGTTGCAGATGCGGCAGGACGGACACGACTTATTCGCCCGCCAGAAG
ACCCGATGGAAGCACTTACCTGAGCTCTAAGGGATGACTCATATTTCTTCCCCTCAAAGAGCTAG
ATAAGGTTATCCCTTCCTTATCTAGCTCAGGTAAGGTCCTGGTAA
Right flanking sequence: Indices 976686 -- 977185
ACCATATGAATAGTGAGTGACCCCTAAATAATATAGGGCCCTTCTAATTTGAACCGGGGTTGGGA
TAACCTTTCATTTCTTTTTGGTCCATTCATTTGGGTGGGGGACCAGAGCATGTCGCGAAAGGAGC
ACACTGGGCGTGCTTCGACCGTGTCTCCGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGG
GCGCGCCTGGCTCCGGGGGGGGAAGGCAACAACTCCCCTGTACGTACATGCGCTGATCGCTAGCG
CATGTACCCTTTCGGACGGGGGGCCTGCCGTCGGCAGCTCCGCTAAGGTTATCCCGATCCGGGCT
AAGCACTTCCTTCGAACGAAGATAGGAGTCTTTCATTTATCCATTCAAATAACGCTCCCTTCCCC
TTCCCTCTACGCAAAGGAAAGGGCCCTCACCCATATGATGAGTGAGCGTTAAAACCCTCACCATC
GGAATGGTGAGCGCCTACCGGCCCTCTCCTCTCCTCTCGATGGCG
Found at i:977776 original size:27 final size:27
Alignment explanation
Indices: 977739--977797 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
977729 TAGTGAGTGA
977739 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
977766 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
977793 CCCCT
1 CCCCT
977798 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 977239 -- 977738
AGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTA
AAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATA
TGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTTAGG
GTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTTGACAGTCGAGCCCC
TACCGGTCCTCACCCATCGGAATGAGTGAGTGACCCCTAAGAAGTAAGGGCCCTCACCCATATGA
TGGATGAGCGAGAAATCCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTCGACCTCGTAACC
TCGGCCGAGTCCCTAACGGGCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCTGGA
CAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 977798 -- 978297
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTTGCCCCTCCTA
TTTCTTCTCTGGCGGCTTCGCACCTTAATAATCAAGAAGAAAACCTGATCTGGGACTAGGCACTT
TGAGGTGAAACCTATCGGTTATACCTTACCACCTATAGTCGAGGGGTATAACCTTGCGGATCGGT
TTATCCCATACCCTATCTTATACGTACGGAATTAAGAGAAGTTTGGGAATTGGATAACCTGAAGC
GCACTGTGCTTCGGCAAATGAGAGTTTCCGGTGGAACCGGTGAACCACGCATCCTGAGGTTATAT
GCGTGGGACAGAGGGCCCGTAGTACCTGCTGCCGCTCAGGACCTCGGGGAAAGGCTATGCAGTGG
AAGGGAAGGAGCCTAAATCGACCCACCACCCTTTCTTATTCATTC
Found at i:977807 original size:27 final size:27
Alignment explanation
Indices: 977749--977819 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
977739 CCCCTCTCCT
*** *
977749 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
977776 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
977803 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
977820 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 977249 -- 977748
CTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTA
TCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGT
CCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTAT
TGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTTGACAGTCGAGCCCCTACCGGTCCT
CACCCATCGGAATGAGTGAGTGACCCCTAAGAAGTAAGGGCCCTCACCCATATGATGGATGAGCG
AGAAATCCCTCACCATATGAATAGTGAGTCCCTACCGGGCCTCGACCTCGTAACCTCGGCCGAGT
CCCTAACGGGCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCTGGACAGTCGAGTG
TGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 977820 -- 978319
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGT
GAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTTGCCCCTCCTATTTCTTCTCTGGCGGCTTCGCA
CCTTAATAATCAAGAAGAAAACCTGATCTGGGACTAGGCACTTTGAGGTGAAACCTATCGGTTAT
ACCTTACCACCTATAGTCGAGGGGTATAACCTTGCGGATCGGTTTATCCCATACCCTATCTTATA
CGTACGGAATTAAGAGAAGTTTGGGAATTGGATAACCTGAAGCGCACTGTGCTTCGGCAAATGAG
AGTTTCCGGTGGAACCGGTGAACCACGCATCCTGAGGTTATATGCGTGGGACAGAGGGCCCGTAG
TACCTGCTGCCGCTCAGGACCTCGGGGAAAGGCTATGCAGTGGAAGGGAAGGAGCCTAAATCGAC
CCACCACCCTTTCTTATTCATTCAAGGTTCTCCCTTTCCTTTGCG
Found at i:978665 original size:1 final size:1
Alignment explanation
Indices: 978659--978708 Score: 100
Period size: 1 Copynumber: 50.0 Consensus size: 1
978649 ATTCATGGGG
978659 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
978709 GGGGGGGGGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Left flanking sequence: Indices 978159 -- 978658
CCGGTGAACCACGCATCCTGAGGTTATATGCGTGGGACAGAGGGCCCGTAGTACCTGCTGCCGCT
CAGGACCTCGGGGAAAGGCTATGCAGTGGAAGGGAAGGAGCCTAAATCGACCCACCACCCTTTCT
TATTCATTCAAGGTTCTCCCTTTCCTTTGCGTAAGGGAAGGGTTGCACACTCAATCAATCAAGCA
AGCAGTACGAAGAGATTGATGATACTAAGCAGCTACCGCTTATTAGCCTACCTACCTACCTGATC
AAGTCATCATTGAAAGGGAAAACCTCATGAAAGACGCCTAGTTGAAGCTGTCATTTATACCCACC
CCCCATTCATTTCTTTAAGGGCGGGCAGGATATCACCACTTCGAATTCTACGATCGATATTGAGT
AGGCGACCGAACTGGAGACGCCAAGCAGCTTCATCTATCCGACCCAACCCACCCTCTACGAATAG
AGCCCCCGTCTTACGAATGAATGTGGCTTTAGCGAATTCATGGGG
Right flanking sequence: Indices 978709 -- 979208
GGGGGGGGGGGGGGGAGGAGGCGAGATATGGAAAAGAATACCATCACTCCAACCTATTATGCAAA
ACGATCAACGCAAGCTAACTTAGCTTAGCCCGTGGCAGGTGCAGAATGACAAATTCTGTCACTAT
CGTAGTTGCCGTAACAAATTAGCACCCACTAAACGTGCTTCCAGAATTTGTTACGGCACTATACT
ATAGCAAGCAGTAGTTTCATTTGTGAATTTGTGTTATCCAGAATTACGGCAAATTCTGTCACTAA
CTGCTGGGCATCTATCTCTTATCGCTGCTGCCCACTTAGTCGAGAGACTCGAGGGACCGTAGCAT
GCCCTATAGTATAGCACAGAATTTTTTCATTACGGCTCACCTCACTATAGCAAGGTTGCATTCTG
GCCTGATTGATTGAAGTTGCATGCACAAATTATGTAACTATAGACTATAGATCCTACACAAACAC
TAAAGTGCTTCCTTTCCCGTGATCCCTATCGGTTATACCTTCCCC
Found at i:980785 original size:32 final size:32
Alignment explanation
Indices: 980749--980837 Score: 178
Period size: 32 Copynumber: 2.8 Consensus size: 32
980739 TTCATATGGT
980749 GAGGGTGCGTAAGCACACTCGACTGTCCAGGA
1 GAGGGTGCGTAAGCACACTCGACTGTCCAGGA
980781 GAGGGTGCGTAAGCACACTCGACTGTCCAGGA
1 GAGGGTGCGTAAGCACACTCGACTGTCCAGGA
980813 GAGGGTGCGTAAGCACACTCGACTG
1 GAGGGTGCGTAAGCACACTCGACTG
980838 CCTTTGGTTA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 57 1.00
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.16
Consensus pattern (32 bp):
GAGGGTGCGTAAGCACACTCGACTGTCCAGGA
Left flanking sequence: Indices 980249 -- 980748
AAGAAAATAAGACTTCCTTTCAAGGCCTTATTGTTCGAAGTATTGACCGACCTGAAAATAGGATG
CGTAAGCAGGCTCGACCATAAGCTAGTTACTTATTTGAGAGGGGCACAAAATAAGTCAATTGAAC
CTTTCTTCTTCAAATGGGTCCGCCTTCTCGAAGTACTTATTTCCTTGCCCTCAGAAGCGCAAGCC
CTCCGGACCTTGGCTTGGCCGGCGTCAATTCAGAGACTATTTACTTCTCAAGTATGGGCTATGAA
AAGACATTCCTGGGGCAAGATCTATGGAGTTATGTACTTATCTCCTTGGCCTTATTCTATCCCCC
CCCTATTAGTTACCGAAGTGATACAAGTAAATACGTGAAAGAAACACTTCGTATAGTAAGGGCTA
TTTAAGGACCTCCCCGGTCCATCCTGGGTTTACTTCGCCTAACTCGGGTGAAAAATAGCAGGGTT
TCTAAGGGCCCTTACTTCTTAGGGGTCACTCACTATTCATATGGT
Right flanking sequence: Indices 980838 -- 981337
CCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGA
GGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTTTCTATT
CTATGGAGTTATGTAACTTACTATTTGTTTTCTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGA
CCTTGGCCTTCTTCTCTCTCTAGTTAACGAAACGAGAAAGGTACGCGTTTATGGAGTTATGTTTC
CTCTTTATGCTAGTTACCGAAATGATACGAGTAAATACGTTAAAGCAATACTTCGTCAAGGCGGA
GCAATTTGGGGGCATGAAAATACTTTCCCCGGGAAGACTTCGTTAAGTAAGGAGGCATTGGAAGG
CCACCCTGGGTTTACTTCGCCCTTCGGGTTCAAATTAGAAGGGCCCTATATTATTTAGGGGTCAC
TCACTATTCATATGGTGAGGGTTAATCAGGACTTGACTGGATTGA
Found at i:980925 original size:88 final size:86
Alignment explanation
Indices: 980778--980960 Score: 296
Period size: 88 Copynumber: 2.1 Consensus size: 86
980768 CGACTGTCCA
980778 GGAGAGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGTGCGTAAGCACACTCGACTGCCTTT
1 GGAGAGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGTGCGTAAGCACACTCGACTGCCTTT
980843 GGTTACTTATTTGAGAGGAGG
66 GGTTACTTATTTGAGAGGAGG
* * * *
980864 GGAGAGGGTGCGTTAGCACACTC-ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCC
1 GGAGAGGGTGCGTAAGCACACTCGACT-GTC-CA-GGAGAGGGTGCGTAAGCACACTCGACTGCC
980928 TTTGGTTACTTATTTGAGAGGAGG
63 TTTGGTTACTTATTTGAGAGGAGG
980952 GGAGAGGGT
1 GGAGAGGGT
980961 TTCTATTCTA
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
85 3 0.03
86 24 0.27
87 1 0.01
88 62 0.69
ACGTcount: A:0.23, C:0.18, G:0.35, T:0.24
Consensus pattern (86 bp):
GGAGAGGGTGCGTAAGCACACTCGACTGTCCAGGAGAGGGTGCGTAAGCACACTCGACTGCCTTT
GGTTACTTATTTGAGAGGAGG
Left flanking sequence: Indices 980278 -- 980777
ATTGTTCGAAGTATTGACCGACCTGAAAATAGGATGCGTAAGCAGGCTCGACCATAAGCTAGTTA
CTTATTTGAGAGGGGCACAAAATAAGTCAATTGAACCTTTCTTCTTCAAATGGGTCCGCCTTCTC
GAAGTACTTATTTCCTTGCCCTCAGAAGCGCAAGCCCTCCGGACCTTGGCTTGGCCGGCGTCAAT
TCAGAGACTATTTACTTCTCAAGTATGGGCTATGAAAAGACATTCCTGGGGCAAGATCTATGGAG
TTATGTACTTATCTCCTTGGCCTTATTCTATCCCCCCCCTATTAGTTACCGAAGTGATACAAGTA
AATACGTGAAAGAAACACTTCGTATAGTAAGGGCTATTTAAGGACCTCCCCGGTCCATCCTGGGT
TTACTTCGCCTAACTCGGGTGAAAAATAGCAGGGTTTCTAAGGGCCCTTACTTCTTAGGGGTCAC
TCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGTCCA
Right flanking sequence: Indices 980961 -- 981460
TTCTATTCTATGGAGTTATGTAACTTACTATTTGTTTTCTCCTTGCACTAGGAAGCGCAAGCCCC
TCCGGGACCTTGGCCTTCTTCTCTCTCTAGTTAACGAAACGAGAAAGGTACGCGTTTATGGAGTT
ATGTTTCCTCTTTATGCTAGTTACCGAAATGATACGAGTAAATACGTTAAAGCAATACTTCGTCA
AGGCGGAGCAATTTGGGGGCATGAAAATACTTTCCCCGGGAAGACTTCGTTAAGTAAGGAGGCAT
TGGAAGGCCACCCTGGGTTTACTTCGCCCTTCGGGTTCAAATTAGAAGGGCCCTATATTATTTAG
GGGTCACTCACTATTCATATGGTGAGGGTTAATCAGGACTTGACTGGATTGACCTTTCATTCAGG
ACCTGATAATACCTTTCAAACCCTTATTGTTTGCCCGTATTTCTTCCCCTCAAAGAAAGAAAAGG
CCAACTCTTCCCACAGTTATATAAACTGAGATCATATCTGTTAGA
Found at i:987062 original size:30 final size:30
Alignment explanation
Indices: 986995--987208 Score: 365
Period size: 30 Copynumber: 7.1 Consensus size: 30
986985 CGACTGATAA
* ***
986995 GGAGAGGATGCGGAGCACGCTCGACTGATAA
1 GGAGAGGATGCGGAGCACGCTCGAC-CACCG
*
987026 GGAGAGGATGCGGAGCACGCTCGACCAACG
1 GGAGAGGATGCGGAGCACGCTCGACCACCG
*
987056 GGAGAGGATGCGGAGCACGCTCGACCAACG
1 GGAGAGGATGCGGAGCACGCTCGACCACCG
987086 GGAGAGGATGCGGAGCACGCTCGACCACCG
1 GGAGAGGATGCGGAGCACGCTCGACCACCG
987116 GGAGAGGATGCGGAGCACGCTCGACCACCG
1 GGAGAGGATGCGGAGCACGCTCGACCACCG
987146 GGAGAGGATGCGGAGCACGCTCGACCACCG
1 GGAGAGGATGCGGAGCACGCTCGACCACCG
987176 GGAGAGGATGCGGAGCACGCTCGACCACCG
1 GGAGAGGATGCGGAGCACGCTCGACCACCG
987206 GGA
1 GGA
987209 TTCGAAAAAG
Statistics
Matches: 178, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
30 153 0.86
31 25 0.14
ACGTcount: A:0.25, C:0.27, G:0.40, T:0.07
Consensus pattern (30 bp):
GGAGAGGATGCGGAGCACGCTCGACCACCG
Left flanking sequence: Indices 986495 -- 986994
AGAAAAATTGACTTCTAATTGATTATCAATTACCTTCATGCTAGTGGAGATTATCAGGTAGGAGA
TCGGCAGATCCTGATGAGTTATATTCTGACCTTCGTGAGCGTGATCCAAAGCCAGATGCAGAGTC
ATTTCCCACGATTTCAAGTGTTGTACGGCTAGTATGACTCTGGATGGGCAACGCCAGGTTTCATT
AGTGAAATTCCCACAATTTCAAGTGTGGTACGGCTGGTCTTGCTTGCTCGTATGGTTAGATGGGC
AACGCCAGGTTCTCACTCGTGAATTTCCCACTCGCCATTGTTCTACCCACCATAAGACAGCCAGG
AATAAGACACGCACCATAATAAAGCTAGAATGCTGCGCCTGCTTATTGGATTGCACGACTGACTA
GCTAGTAGGAGAAATAAGCATCTGAGCTCTATCCACTGGCTGGGTAGTTGGACACGGGTTCGAAC
AAGCAAGAGGGAGGGCGAGGATGCGTAAGCAGGCTCGACTGATAA
Right flanking sequence: Indices 987209 -- 987708
TTCGAAAAAGCTCCCTGAATATAGGGTTGAACCCCTTCTAGCACTTAGCGGGCACTAATGTACCC
AATCAAATGAGTCCAAGGAAGTAGTTCTAATGTCATCCAACTTGCCTAACACCGGGTTGCTCATC
CAACCTCGTCTACCTGACCAAACCATCGTCACGTGAACCATGGCTTGGCTAACTCACCTACCCTC
CCTTGTATGATTAATACTAACTCCCAAACTGAGAGCTCCCTCACTGACCTTCAATGCCCATCAAT
AGAAGTACAGATGCTTCCAAGCCCAACGCATAGGAGATTCTCTCACCTACACAAATGCGGCACCT
CTCCTTTGTGGTCGAGCGGCCTAACGGCACCTCACCTCAACTTAATGACTAAATCAAAGGTGTTA
AGCCATTCGCCAAGAGGGTTTCGTAGAATATATTAGGGGGAACGGAGAATCGCTCGTAGAATGGT
TATTTTCCCAAGGAAGGTAAGGTCCCGGAGGGGCTTGCGCTTCCT
Found at i:990493 original size:13 final size:13
Alignment explanation
Indices: 990475--990524 Score: 93
Period size: 13 Copynumber: 3.9 Consensus size: 13
990465 CAGATAGATA
990475 GATAGGCAGGATG
1 GATAGGCAGGATG
990488 GATAGGCAGGATG
1 GATAGGCAGGATG
990501 GATAGGCAGGATG
1 GATAGGCAGGATG
990514 GATAGGC-GGAT
1 GATAGGCAGGAT
990525 AAATAGATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 4 0.11
13 33 0.89
ACGTcount: A:0.30, C:0.08, G:0.46, T:0.16
Consensus pattern (13 bp):
GATAGGCAGGATG
Left flanking sequence: Indices 989975 -- 990474
TTCGAAGCTAAAGTAGAAAGAACCCATGTGGTGTCTGTTGATGAACCATTCTGAGCAGGTGAATC
GTAAGTAATGAGCTGCTGTAGTCAATAGCTTTGGTGTGACATCGGGACTCACTCGATCCCGTACC
TTCCCGTGTTGATGAGGCATGAGAATTTGATGGGTTTTCTCTCGTTAGGTCTCTCTCCACCACAC
GTCTAGCCAGCAAATAGCAGCATCCAGTCGATCAACCTCAAAGCAATCCCATGCAGTGGTTGAAA
CAATGGGGAACTTCTCTTCTCCTTCCTCTCGATGGAAGTGGTGGGCCCGGGTGCAAGGGCATACC
TATCATATAGAAAATTCCGGATGTGAACCATAACCTATATATATGAGGGTATAGGAGTATAGGTG
TTATGAGTATGAGTCAGATGTATGGGGATAGAGTCTAGAGGGATAGGTAGGCTAGGCGGATTAGG
CAGATAGGTAGATAGAGAGATGGAGGATGGTAGGCCAGATAGATA
Right flanking sequence: Indices 990525 -- 991024
AAATAGATGGATAGGCAGGCAGGTAGGCCAGCTAGATATAGAGAAGGAGGATGGGTATAGAGCTA
GCTGTAGATAGAGAGAGTATAAGCGTTATCAGTGTTATAAGTCTGAGTCTGCTGTAAGTGCTACA
AGTATGAGTCTGATGTATGTGGTATAAGTATGAGTCTGAAGTCTGTTCTATAGGGGATGTATGTT
GAGATGGGTAGAAGGTTCGATGGGTAGAGGGGTATCAGAGGGCTAGTCTGAATGTGTAAGATGGA
TGGGGTAGAGTCTGACTGCTTGAATGACGGATGGAATGATGGAAAGTATGCTTCCTTGGTTGAAT
GACTGATTGAATGACTGATTGACTGACTGATGGGTAGTCTGCCTGATTCCTCCTTGCTGGATGGA
TTGAGTTAGCTTGGTTGCGTGAGCTAGGCATATATGCTTGATGGTTGTTTATGCTTGTAAGCTTT
AATAAGCTCTAAAGATTAGCTCTTGGAAGAAAGTCTAGTAAGAAG
Found at i:990657 original size:26 final size:26
Alignment explanation
Indices: 990628--990693 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
990618 TCAGTGTTAT
* *
990628 AAGTCTGAGTCTGCTGTAAGTGCTAC
1 AAGTATGAGTCTGATGTAAGTGCTAC
* * *
990654 AAGTATGAGTCTGATGTATGTGGTAT
1 AAGTATGAGTCTGATGTAAGTGCTAC
990680 AAGTATGAGTCTGA
1 AAGTATGAGTCTGA
990694 AGTCTGTTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (26 bp):
AAGTATGAGTCTGATGTAAGTGCTAC
Left flanking sequence: Indices 990128 -- 990627
AATTTGATGGGTTTTCTCTCGTTAGGTCTCTCTCCACCACACGTCTAGCCAGCAAATAGCAGCAT
CCAGTCGATCAACCTCAAAGCAATCCCATGCAGTGGTTGAAACAATGGGGAACTTCTCTTCTCCT
TCCTCTCGATGGAAGTGGTGGGCCCGGGTGCAAGGGCATACCTATCATATAGAAAATTCCGGATG
TGAACCATAACCTATATATATGAGGGTATAGGAGTATAGGTGTTATGAGTATGAGTCAGATGTAT
GGGGATAGAGTCTAGAGGGATAGGTAGGCTAGGCGGATTAGGCAGATAGGTAGATAGAGAGATGG
AGGATGGTAGGCCAGATAGATAGATAGGCAGGATGGATAGGCAGGATGGATAGGCAGGATGGATA
GGCGGATAAATAGATGGATAGGCAGGCAGGTAGGCCAGCTAGATATAGAGAAGGAGGATGGGTAT
AGAGCTAGCTGTAGATAGAGAGAGTATAAGCGTTATCAGTGTTAT
Right flanking sequence: Indices 990694 -- 991193
AGTCTGTTCTATAGGGGATGTATGTTGAGATGGGTAGAAGGTTCGATGGGTAGAGGGGTATCAGA
GGGCTAGTCTGAATGTGTAAGATGGATGGGGTAGAGTCTGACTGCTTGAATGACGGATGGAATGA
TGGAAAGTATGCTTCCTTGGTTGAATGACTGATTGAATGACTGATTGACTGACTGATGGGTAGTC
TGCCTGATTCCTCCTTGCTGGATGGATTGAGTTAGCTTGGTTGCGTGAGCTAGGCATATATGCTT
GATGGTTGTTTATGCTTGTAAGCTTTAATAAGCTCTAAAGATTAGCTCTTGGAAGAAAGTCTAGT
AAGAAGGACGGCTAGCTTGTGTGAAGGCTCAAGGTTTCCGGCTTATGGTTCAAGTTTCCAGGTGA
AAGGCTCGAGGTTGAAAGTGAAAAGTATTCTAGTTGTTATACTGCCACCAGCTAACCGCTAATCC
TTCCTAACTCAAACCCGATCTGATGACTAGGCGTAGGTAGGCGTG
Found at i:990706 original size:26 final size:26
Alignment explanation
Indices: 990625--990706 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 26
990615 TTATCAGTGT
* ** *
990625 TATAAGTCTGAGTCTGCTGTAAGTGC
1 TATAAGTATGAGTCTGAAGTATGTGC
* * *
990651 TACAAGTATGAGTCTGATGTATGTGG
1 TATAAGTATGAGTCTGAAGTATGTGC
* *
990677 TATAAGTATGAGTCTGAAGTCTGTTC
1 TATAAGTATGAGTCTGAAGTATGTGC
990703 TATA
1 TATA
990707 GGGGATGTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.37
Consensus pattern (26 bp):
TATAAGTATGAGTCTGAAGTATGTGC
Left flanking sequence: Indices 990125 -- 990624
GAGAATTTGATGGGTTTTCTCTCGTTAGGTCTCTCTCCACCACACGTCTAGCCAGCAAATAGCAG
CATCCAGTCGATCAACCTCAAAGCAATCCCATGCAGTGGTTGAAACAATGGGGAACTTCTCTTCT
CCTTCCTCTCGATGGAAGTGGTGGGCCCGGGTGCAAGGGCATACCTATCATATAGAAAATTCCGG
ATGTGAACCATAACCTATATATATGAGGGTATAGGAGTATAGGTGTTATGAGTATGAGTCAGATG
TATGGGGATAGAGTCTAGAGGGATAGGTAGGCTAGGCGGATTAGGCAGATAGGTAGATAGAGAGA
TGGAGGATGGTAGGCCAGATAGATAGATAGGCAGGATGGATAGGCAGGATGGATAGGCAGGATGG
ATAGGCGGATAAATAGATGGATAGGCAGGCAGGTAGGCCAGCTAGATATAGAGAAGGAGGATGGG
TATAGAGCTAGCTGTAGATAGAGAGAGTATAAGCGTTATCAGTGT
Right flanking sequence: Indices 990707 -- 991206
GGGGATGTATGTTGAGATGGGTAGAAGGTTCGATGGGTAGAGGGGTATCAGAGGGCTAGTCTGAA
TGTGTAAGATGGATGGGGTAGAGTCTGACTGCTTGAATGACGGATGGAATGATGGAAAGTATGCT
TCCTTGGTTGAATGACTGATTGAATGACTGATTGACTGACTGATGGGTAGTCTGCCTGATTCCTC
CTTGCTGGATGGATTGAGTTAGCTTGGTTGCGTGAGCTAGGCATATATGCTTGATGGTTGTTTAT
GCTTGTAAGCTTTAATAAGCTCTAAAGATTAGCTCTTGGAAGAAAGTCTAGTAAGAAGGACGGCT
AGCTTGTGTGAAGGCTCAAGGTTTCCGGCTTATGGTTCAAGTTTCCAGGTGAAAGGCTCGAGGTT
GAAAGTGAAAAGTATTCTAGTTGTTATACTGCCACCAGCTAACCGCTAATCCTTCCTAACTCAAA
CCCGATCTGATGACTAGGCGTAGGTAGGCGTGGTAGGCCCATAAG
Found at i:990861 original size:12 final size:12
Alignment explanation
Indices: 990844--990880 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
990834 GCTTCCTTGG
990844 TTGAATGACTGA
1 TTGAATGACTGA
990856 TTGAATGACTGA
1 TTGAATGACTGA
*
990868 TTGACTGACTGA
1 TTGAATGACTGA
990880 T
1 T
990881 GGGTAGTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (12 bp):
TTGAATGACTGA
Left flanking sequence: Indices 990344 -- 990843
GAGGGTATAGGAGTATAGGTGTTATGAGTATGAGTCAGATGTATGGGGATAGAGTCTAGAGGGAT
AGGTAGGCTAGGCGGATTAGGCAGATAGGTAGATAGAGAGATGGAGGATGGTAGGCCAGATAGAT
AGATAGGCAGGATGGATAGGCAGGATGGATAGGCAGGATGGATAGGCGGATAAATAGATGGATAG
GCAGGCAGGTAGGCCAGCTAGATATAGAGAAGGAGGATGGGTATAGAGCTAGCTGTAGATAGAGA
GAGTATAAGCGTTATCAGTGTTATAAGTCTGAGTCTGCTGTAAGTGCTACAAGTATGAGTCTGAT
GTATGTGGTATAAGTATGAGTCTGAAGTCTGTTCTATAGGGGATGTATGTTGAGATGGGTAGAAG
GTTCGATGGGTAGAGGGGTATCAGAGGGCTAGTCTGAATGTGTAAGATGGATGGGGTAGAGTCTG
ACTGCTTGAATGACGGATGGAATGATGGAAAGTATGCTTCCTTGG
Right flanking sequence: Indices 990881 -- 991380
GGGTAGTCTGCCTGATTCCTCCTTGCTGGATGGATTGAGTTAGCTTGGTTGCGTGAGCTAGGCAT
ATATGCTTGATGGTTGTTTATGCTTGTAAGCTTTAATAAGCTCTAAAGATTAGCTCTTGGAAGAA
AGTCTAGTAAGAAGGACGGCTAGCTTGTGTGAAGGCTCAAGGTTTCCGGCTTATGGTTCAAGTTT
CCAGGTGAAAGGCTCGAGGTTGAAAGTGAAAAGTATTCTAGTTGTTATACTGCCACCAGCTAACC
GCTAATCCTTCCTAACTCAAACCCGATCTGATGACTAGGCGTAGGTAGGCGTGGTAGGCCCATAA
GTCAATGATTCCCCAATCTGGTGAGAGAGTGCAATCTGTAAATAAAAATGCTCAATGAAGGCCCT
AAATATTCCCTTACGGCCTCTCATTCAGGGGGCTGAAGTGGCTATAGAACGTCCGCAAATGCCCC
TCAAAGCCGCTAATAAAGCCAGCCAAGCCGTCCTTTCCAGCATCC
Found at i:995285 original size:14 final size:14
Alignment explanation
Indices: 995266--995292 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
995256 TCCATAAAAC
995266 TTTTGATATCTATA
1 TTTTGATATCTATA
995280 TTTTGATATCTAT
1 TTTTGATATCTAT
995293 CTATAGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTTGATATCTATA
Left flanking sequence: Indices 994766 -- 995265
AAGTTGGCTTGAAATTGTGCATTCCCGATGACTACTCACTCACTTGCTTATGGAAGAACCTTATC
TTCAAATGCTCCATGGCTTAAGGCTATATGGATCTTACAATGTTCCTGGGCGAGCTTATTCCGGG
GTTCTGGCCAATCTAACAAGGCTTCTGGGCAGGGGCGCCAATCTCAACAAGGCTGATGGGAGGAC
CGACCTATTCTCACTAGCGGTAGCGATAACTTGAAGTAATCAGATAAGTAAGCTAGTCATATAAA
GAGTGGTAAACACTACAGATAGCATCGTCGCACTTAGGGTAAAGGTCAAAAGCCCGCCTTATATT
ATGTCTATAAAGAGAAAGGGTGTGAGTGGATAAATAACAAATAGAAAGGCCCAGTTGAGAGGTTA
TCATTCAAATTCCCATATTAAGGCACCAGGTTGGTTCCGGTCGATCCCACAACTTAGTGGTAAAA
CATAAATGAAAGCCGCAAGTAGAGGTTATGTCAAATCCATAAAAC
Right flanking sequence: Indices 995293 -- 995792
CTATAGTTTGGGCGGGCTTTAGAGATTTAGATCTTGGAAGTTTTCGGTTCGACGTTCGTTGACTG
ACAATCCTAGAATGATGGCAAAGCGGTCCGAGTAGAGCTATCTCGTTGTTAAGCTGGCTCTGTCT
GTCTGGGCATATCTAGAGCAGTCTGAAGTCCCCCCATCCATCCCATAATCCCATCCCAAGGAGGC
TCTCTGATGTCCCATAATGCCATCCATCTACCCAAGCCATCCATCCAGCCATGTCCCTGATTGAA
GTTCCGGCTGTTTATACTCTATCCGGCCGGGGCAGTTCAAGCAGCTAAAGTTCAACCCTATAGGC
TACCGCAGGAGCATCATGCTACTAATACCTCGGCTAATAACCCACCATCCATCCGGTGCTTCTAA
GGGAAGGGGTTTATAGCCATTAATTCCTAAAGTGTTCAAGTAGGGCTAAAAAGGCTAGCTAGCCC
TGAAGGTGTATAGTCAGAGTGCCATAGCAACAAAGGCATTTATAA
Found at i:997323 original size:24 final size:25
Alignment explanation
Indices: 997279--997328 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
997269 AGAATTATAT
997279 GCTCTACCTAGCTTATAA-GGGTAA
1 GCTCTACCTAGCTTATAAGGGGTAA
997303 GCTCTACCTAGCTTATAAGGGGTAA
1 GCTCTACCTAGCTTATAAGGGGTAA
997328 G
1 G
997329 GAACCTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
GCTCTACCTAGCTTATAAGGGGTAA
Left flanking sequence: Indices 996779 -- 997278
TTATATAAGTAATTACGCTTTAGCATCTACTGGGATCGTAGCTCAAATCATCGAGCATAATATCT
TATACAAAGAAAGAGAAATTGAAAGTATATAAACAACCCTCGACCAGCAACGCCAATAAGTGTTG
GACTTATCTTGGCTTTCTTCTTGCTAGAAGGACGGGCGGATCTTCGAATCAAGGACCGGACGGAT
GCTTCAAGTTCAGGGACGGATGCTGCTCCTAAAGCCATTCGTAACTCCATGAAAGGTGGGTGGTC
GAACGCGGGCCTCTCCTAGTTTCGTATGCTGCTGCTTCGAACAATAGGGATTAGTTCCTATGCAC
TATGGTAGGGATTAGTTCCCACAGGTTGAGTGACAGCTTAGGGGTTTAGTTCCAATAGGGTCCGG
TTTATCAGGTTGGTTTACCGATTAGTCCCCACAGGCCTTGAAAAGGTTGGTTTACCACCATTGGG
GATTAGTCCACTGGGGCTTTTCTCCTCTCCACCTTAGAATTATAT
Right flanking sequence: Indices 997329 -- 997828
GAACCTTATATAGGGGTAGGGCTCCACTGAGGTGAGGAAGGTACAAAGCTATTCTCCACAACTTA
GCAGGCTATTCTCCACTACCTTAAACCTTTTAAGGGGTTTGGGTCATAGGGTAGGTAGGGTTAGC
CGGCGGAGGCTGTAATACATTTATAAGACTGAAACTAGAAGACTTCCGGGCGTCTAGTTATGGTA
GATGAAATAGCTTAAGACTCAGCTTGTTCCCCCTGAGGGTAGACTGACCTGAGTGAAGGGGGAAG
GTAAGGTACCGAACTGATAGCGGTGAGACGTTTCCCTCGAAGATTGCCTAGCTTCAAAGGTAACC
CCAGCGTGATAATTGGAAGAAATGGGTCGACTATGGCTGAGCAAAGGATGAGTCTAAATGGCATA
ATGAATATATGCGGGGTAATTTAGTTAGTCCGAGAAATAACCAGTCAAAGCGGCCATTCCAGTAC
CCGGGTATAGAGGAAGAAGAGACTAGGTAACCGTAGGCCGGGTAA
Found at i:1002050 original size:65 final size:65
Alignment explanation
Indices: 1001916--1002108 Score: 323
Period size: 65 Copynumber: 2.9 Consensus size: 65
1001906 TCTCAAAATA
** * *
1001916 GCATAATGACATATATAATATATGCATGATTGGATTCGAGAGCGTAATTACATATCTCATTCATT
1 GCATAATGACATATATAATATATGCATGATCCG---CTAAAGCGTAATTACATATCTCATTCATT
1001981 CAT
63 CAT
1001984 GCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCATTCATTCAT
1 GCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCATTCATTCAT
1002049 GCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCATTCA
1 GCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCATTCA
1002109 GGCAGGAAGA
Statistics
Matches: 121, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
65 90 0.74
68 31 0.26
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (65 bp):
GCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCATTCATTCAT
Left flanking sequence: Indices 1001416 -- 1001915
GCATTTCAATTGACTTATTGGGTGGGGGCGTTGCTCAATATTCCAAAACCTCCGCCACGGTCAAA
TGGCCAATCTCGTAGGGTGCCCCCGGCAGGGTGAGGTACGAACGCTCGACTAATAAGGCCGCCAT
CGCTCGACCAACGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAATTGAACTTGAATCCA
ATTCATTGGCTGCCGTAATGACATATATAATGATAGTGATTTCCTAGCTAGAGAGAAGAAAGACC
AGTCATTGTTATGGTGGTAGTTATATATGAGCATGTGGTAGTGAAAGAGAAAGCTTCGTAGCGTA
GCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCTGACCCCCTAGCTCTCAAGCTCG
GAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGTTCTTAGAGT
TCAGGCGCTTTGCCGAAACTTGACTTGATTCGATCTCTCAAAATA
Right flanking sequence: Indices 1002109 -- 1002608
GGCAGGAAGATCGTCATGAATTCGATCATGACCGTAATGACATATATAATATATGAATATGAAGG
CTGCCGGCATTCGAAAGGCCCCCTATGACTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGG
GTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCA
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACT
CACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAG
GGGATGCGCAAGCAGGCTCGACTGTGAAGGAGAGCCAAACCAATAAGTAAACCCTAACCTTTAGG
TGCTCGACTGTTAAGGCCGCAGTTACTTATTTGAGAGGGGGGCCG
Found at i:1002365 original size:88 final size:88
Alignment explanation
Indices: 1002216--1002377 Score: 324
Period size: 88 Copynumber: 1.8 Consensus size: 88
1002206 GGGGCGGAGC
1002216 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1002281 GGAGGGGAGAGGGTGCGTTAGCA
66 GGAGGGGAGAGGGTGCGTTAGCA
1002304 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1 CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
1002369 GGAGGGGAG
66 GGAGGGGAG
1002378 CTCGACTGCC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 74 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (88 bp):
CACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGA
GGAGGGGAGAGGGTGCGTTAGCA
Left flanking sequence: Indices 1001716 -- 1002215
GTGAAAGAGAAAGCTTCGTAGCGTAGCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGG
GCTGACCCCCTAGCTCTCAAGCTCGGAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGA
GCGCTTCTCTCAAAGTTCTTAGAGTTCAGGCGCTTTGCCGAAACTTGACTTGATTCGATCTCTCA
AAATAGCATAATGACATATATAATATATGCATGATTGGATTCGAGAGCGTAATTACATATCTCAT
TCATTCATGCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCAT
TCATTCATGCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATATCTCAT
TCAGGCAGGAAGATCGTCATGAATTCGATCATGACCGTAATGACATATATAATATATGAATATGA
AGGCTGCCGGCATTCGAAAGGCCCCCTATGACTTAGGGGCGGAGC
Right flanking sequence: Indices 1002378 -- 1002877
CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
TATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGATGCGC
AAGCAGGCTCGACTGTGAAGGAGAGCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACT
GTTAAGGCCGCAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCGCCATCGAGAGGAGAGGCCCG
GTAGGGGCTCACCATTCCGATGGTGAGGGTACTATTTACCCACCCACCCCAATCCCCGCGGTGTG
AAGCAGGTTCAATGCCTGCTGTATCGGAAAGAATGCATCGGATGGATGCCCGGGCATTGAGAGGG
AAGGACGCTTCCAAAGGCGAAAGGCCGTGGGGAGATACCGTCCGTGATCCATGGATCTCCGATCG
GGAAACCGTATCCAAGCCCCGTGGCTAGTCCGCGCTCCTTGGACT
Found at i:1002391 original size:38 final size:38
Alignment explanation
Indices: 1002340--1002415 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
1002330 CGTAAGCACA
1002340 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
1 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
1002378 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
1 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
1002416 AGGGTGCGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (38 bp):
CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
Left flanking sequence: Indices 1001840 -- 1002339
GAGGGAGCGCTTCTCTCAAAGTTCTTAGAGTTCAGGCGCTTTGCCGAAACTTGACTTGATTCGAT
CTCTCAAAATAGCATAATGACATATATAATATATGCATGATTGGATTCGAGAGCGTAATTACATA
TCTCATTCATTCATGCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATA
TCTCATTCATTCATGCATAATGACATATATAATATATGCATGATCCGCTAAAGCGTAATTACATA
TCTCATTCAGGCAGGAAGATCGTCATGAATTCGATCATGACCGTAATGACATATATAATATATGA
ATATGAAGGCTGCCGGCATTCGAAAGGCCCCCTATGACTTAGGGGCGGAGCCACTCACTATTCAT
ATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGT
GCGTTAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACA
Right flanking sequence: Indices 1002416 -- 1002915
AGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGG
TTACTTATTTGAGAGGAGGGGATGCGCAAGCAGGCTCGACTGTGAAGGAGAGCCAAACCAATAAG
TAAACCCTAACCTTTAGGTGCTCGACTGTTAAGGCCGCAGTTACTTATTTGAGAGGGGGGCCGCC
ATCGCCGCCATCGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGGTACTATTTA
CCCACCCACCCCAATCCCCGCGGTGTGAAGCAGGTTCAATGCCTGCTGTATCGGAAAGAATGCAT
CGGATGGATGCCCGGGCATTGAGAGGGAAGGACGCTTCCAAAGGCGAAAGGCCGTGGGGAGATAC
CGTCCGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCCCCGTGGCTAGTCCGCGCTCC
TTGGACTTGAAAGACTTAGCGAACTGAAACATCTAAGTAGCTATG
Found at i:1002477 original size:126 final size:126
Alignment explanation
Indices: 1002252--1002502 Score: 502
Period size: 126 Copynumber: 2.0 Consensus size: 126
1002242 CGTAAGCACA
1002252 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
1 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
1002317 TATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
66 TATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
1002378 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
1 CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
1002443 TATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGA
66 TATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGA
1002503 TGCGCAAGCA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.29
Consensus pattern (126 bp):
CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
TATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAG
Left flanking sequence: Indices 1001752 -- 1002251
TGTCTGTCTCTATATCTGTTTGAGATAGGGCTGACCCCCTAGCTCTCAAGCTCGGAGGGAATTAG
CTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGTTCTTAGAGTTCAGGCGCTTT
GCCGAAACTTGACTTGATTCGATCTCTCAAAATAGCATAATGACATATATAATATATGCATGATT
GGATTCGAGAGCGTAATTACATATCTCATTCATTCATGCATAATGACATATATAATATATGCATG
ATCCGCTAAAGCGTAATTACATATCTCATTCATTCATGCATAATGACATATATAATATATGCATG
ATCCGCTAAAGCGTAATTACATATCTCATTCAGGCAGGAAGATCGTCATGAATTCGATCATGACC
GTAATGACATATATAATATATGAATATGAAGGCTGCCGGCATTCGAAAGGCCCCCTATGACTTAG
GGGCGGAGCCACTCACTATTCATATGGTGAGGGTGCGTAAGCACA
Right flanking sequence: Indices 1002503 -- 1003002
TGCGCAAGCAGGCTCGACTGTGAAGGAGAGCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCT
CGACTGTTAAGGCCGCAGTTACTTATTTGAGAGGGGGGCCGCCATCGCCGCCATCGAGAGGAGAG
GCCCGGTAGGGGCTCACCATTCCGATGGTGAGGGTACTATTTACCCACCCACCCCAATCCCCGCG
GTGTGAAGCAGGTTCAATGCCTGCTGTATCGGAAAGAATGCATCGGATGGATGCCCGGGCATTGA
GAGGGAAGGACGCTTCCAAAGGCGAAAGGCCGTGGGGAGATACCGTCCGTGATCCATGGATCTCC
GATCGGGAAACCGTATCCAAGCCCCGTGGCTAGTCCGCGCTCCTTGGACTTGAAAGACTTAGCGA
ACTGAAACATCTAAGTAGCTATGGGAAGGGGAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGA
AAGCGGATTGGGCAAATACTAAGCAGCGGAGGTTTTCGTTTCGAT
Found at i:1007386 original size:78 final size:78
Alignment explanation
Indices: 1007288--1007443 Score: 249
Period size: 78 Copynumber: 2.0 Consensus size: 78
1007278 CTCCAGGGGA
* * *
1007288 GAAGCTTAAATCCCGATCAAGGGACGGGGGGGGTAGGCTCGCCGACTCCGGGAGACACCGTATCC
1 GAAGCTCAAATCCCCATCAAGGGACGGGGCGGGTAGGCTCGCCGACTCCGGGAGACACCGTATCC
1007353 GGATCTGCTGTCG
66 GGATCTGCTGTCG
* * * *
1007366 GAAGCTCAAATCCCCCTCAAGGGACGGGGCGGGTCGGCTCGGCGACTCCGGGAGACACGGTATCC
1 GAAGCTCAAATCCCCATCAAGGGACGGGGCGGGTAGGCTCGCCGACTCCGGGAGACACCGTATCC
1007431 GGATCTGCTGTCG
66 GGATCTGCTGTCG
1007444 AAGGAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.16
Consensus pattern (78 bp):
GAAGCTCAAATCCCCATCAAGGGACGGGGCGGGTAGGCTCGCCGACTCCGGGAGACACCGTATCC
GGATCTGCTGTCG
Left flanking sequence: Indices 1006788 -- 1007287
GTGACGTAGTTTTCACGAATTATCTCCTTTCCAAAGCTTGCGCAGTGGGGGCCTTTTCACGCCCG
ACCCTCAACCCGCGCGTAGCTCAGGGTGAACTCGCTGTTTTGCTGCCGTTTTCTTATTTCTTCGT
CCGACGAGTCGGGAGGGATAACGTCGATCGAATTGATGGGAAACAAGAGTGAATATTAGGAGAGG
GACATGACTATAACAAAACCTAGAGAAATTCCAATTCCAAACAACCCATAATTCATCCCACACTT
AACCGGCCATTTTAGATATCTCTTACCCTTATGTCCGAATATTCTGTTTATGTTTCATTGCGTCC
CACTCAATTTGGCCGCCCTTGACCCCCGGATTAGCTTATGTTACCCCTCTCCGAGGGAGGGGTCC
GGAGGTCTCTTCCGGAGGGATCACTCGGGATGTGGAGAATTGATCACTCGGAGCGCTGATGCGCT
CGCCGGAAGCCCCATCCCTGGATTGGGACGAGCTTCTCCAGGGGA
Right flanking sequence: Indices 1007444 -- 1007943
AAGGAGGGGCGGCGGCTGCATCGGCGTCAACGCCACATCACGAGGGGTTTATTAGGTTGCCCCTC
GCCGATGGCTCTTTTTTCAACTACCTAGGCTGGGCCCACCTGTTCCCCGAAGATGTGCAACCCAG
CCATCGGGGCGCCGCGCCCTGGCTCCCCGAGTATCGGGTGGCGCACGAGCTCACGATGGCCAGGG
ATATCCAAGAGACCCTGGGATGTATTTGCTGTCCCAAGGCCTCTTGCCCCCTCTGGAAACCGGGG
GGGTGGGGGGATCTTCATCATCATCCCCTTCCCGGCGACCCCCAAGGCCTCTTGCCCCCTCTGGA
AACCGGGGGGGTGGGGGGATCTTCATCATCATCCCCTTCCCGGCGACCTTTCGCCGGGCCAATAC
GCCTATTTTTGGCAAAACTTCCCTCAACCAAAATATTATGTTGAGGACTGAATTATTGGCGTAGT
TGGTTAGGGCATGATTTAGCGATAGCCGGAGAGTCCAGTGAGGTA
Found at i:1007780 original size:73 final size:73
Alignment explanation
Indices: 1007671--1007816 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
1007661 TATTTGCTGT
1007671 CCCAAGGCCTCTTGCCCCCTCTGGAAACCGGGGGGGTGGGGGGATCTTCATCATCATCCCCTTCC
1 CCCAAGGCCTCTTGCCCCCTCTGGAAACCGGGGGGGTGGGGGGATCTTCATCATCATCCCCTTCC
1007736 CGGCGACC
66 CGGCGACC
1007744 CCCAAGGCCTCTTGCCCCCTCTGGAAACCGGGGGGGTGGGGGGATCTTCATCATCATCCCCTTCC
1 CCCAAGGCCTCTTGCCCCCTCTGGAAACCGGGGGGGTGGGGGGATCTTCATCATCATCCCCTTCC
1007809 CGGCGACC
66 CGGCGACC
1007817 TTTCGCCGGG
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.14, C:0.38, G:0.29, T:0.19
Consensus pattern (73 bp):
CCCAAGGCCTCTTGCCCCCTCTGGAAACCGGGGGGGTGGGGGGATCTTCATCATCATCCCCTTCC
CGGCGACC
Left flanking sequence: Indices 1007171 -- 1007670
GGGGTCCGGAGGTCTCTTCCGGAGGGATCACTCGGGATGTGGAGAATTGATCACTCGGAGCGCTG
ATGCGCTCGCCGGAAGCCCCATCCCTGGATTGGGACGAGCTTCTCCAGGGGAGAAGCTTAAATCC
CGATCAAGGGACGGGGGGGGTAGGCTCGCCGACTCCGGGAGACACCGTATCCGGATCTGCTGTCG
GAAGCTCAAATCCCCCTCAAGGGACGGGGCGGGTCGGCTCGGCGACTCCGGGAGACACGGTATCC
GGATCTGCTGTCGAAGGAGGGGCGGCGGCTGCATCGGCGTCAACGCCACATCACGAGGGGTTTAT
TAGGTTGCCCCTCGCCGATGGCTCTTTTTTCAACTACCTAGGCTGGGCCCACCTGTTCCCCGAAG
ATGTGCAACCCAGCCATCGGGGCGCCGCGCCCTGGCTCCCCGAGTATCGGGTGGCGCACGAGCTC
ACGATGGCCAGGGATATCCAAGAGACCCTGGGATGTATTTGCTGT
Right flanking sequence: Indices 1007817 -- 1008316
TTTCGCCGGGCCAATACGCCTATTTTTGGCAAAACTTCCCTCAACCAAAATATTATGTTGAGGAC
TGAATTATTGGCGTAGTTGGTTAGGGCATGATTTAGCGATAGCCGGAGAGTCCAGTGAGGTAGGT
ATTGATGAAAGGAACGCCGAAAGAGGGAAGAATCAACGAAGAGAAACCAAATCCGAAGAGAAAGA
CTAGGAAAAGAACTGACAAGACAGAAACCTCCTTCTCAATATGCTGGAAGGTGCGAAATTAATAG
GTGCTGGAGCAGCTACAATTGCTTTAGCGGGAGCTGCTGCCGGTATTGGAAACGCTCTTAGTTCC
TTGATCCATTCCGTGGCGCGAAATCCATCATTGGCTAAACAATTATCTGGTCATGCCATTTCGGG
GTTCGCTTTAACCGAAGCTATTGCATTGTCTGCCTCAATGATGGCGTTTCTGATCTCATTCGTAT
TCCGATGGAGTTGCGGAAATATGGAGTGACGTAGACGGAAACTTC
Found at i:1013132 original size:23 final size:24
Alignment explanation
Indices: 1013091--1013150 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
1013081 CTACAACTTA
* *
1013091 TGGGACGGGAGAT-TGCAA-CTAT
1 TGGGACGTGAGATAGGCAACCTAT
1013113 TAGGG-CGTGAGATAGGCAACTCTAT
1 T-GGGACGTGAGATAGGCAAC-CTAT
1013138 TGGGACGTGAGAT
1 TGGGACGTGAGAT
1013151 TACAAAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 8 0.26
23 7 0.23
24 3 0.10
25 13 0.42
ACGTcount: A:0.27, C:0.13, G:0.37, T:0.23
Consensus pattern (24 bp):
TGGGACGTGAGATAGGCAACCTAT
Left flanking sequence: Indices 1012591 -- 1013090
GGTGGTATAAACGATATCCCACGGCCTAATGCAGGAAGTGTAAAAACAACTATTTCCCACGTCCT
CATTAAGTGTAGAAACGATATCCAACCCCACGGCCACTTGAACTTCCCCTGCTGTTAGGGTAGTT
TATTTAGGCCATGGAGCAGGACACAGTAGATATTTACCCAGTTTCTCGCTTACGCTCATGGTTGA
CAGAGAGCGAAATACCACCTTATGGATGGACACAGTCATTGCTTGCATCGGCTGGACGAACACAG
ATATAGATAGATCCATCTCCCTCGACCTCCACCTAGATCCTTTTCCTCTCGAAATAGACCCTAGA
CCTATACCCTCGACCCATTGTTCCATCCGTTCAGTGCCATCCCGTAGGGTCCATCTCTGTCGGGT
ATGTCAGTCTGGCTATGACTAACAGCTATGATAGAGCTTTTTATTAGCTATGAGACTTGACTATG
ACCTTAGAGAAAACTAGTTTGAACAACTAGCACTACTACAACTTA
Right flanking sequence: Indices 1013151 -- 1013650
TACAAAATGAGGTTACCAATTAGAGATTACACATTGAGTACTCAGAGAAGACACAATGAGCTATA
CATAGTACGATAACGCCTCCACACACGGATTGCCAGGAGGTACGTGACACTCATAGCTGCTAGTC
GAGCCAGGTAGGTGTCAATGCTGGTACTCATTCAGGTGTTGATTCACTCGATGACAGGTGTTGAT
CACTCGATGCCGGTACTCAATGCCAAGTGTAGATCCCCAGGAAGTGCCGATTACCAGTTCCCAAT
ACCCGGGAGAGAGACCCTCATTCCCAATCATAGCCCATAGCAGCCATTGCCCTCGAGCCATACCT
CGACCTCACTTAATGCTATGGAACACACTTCCTACCTCGATTGGATTACATTACGATGCATCACT
TATGGTGCACCTGTTTAGGGTCATACACCAGTCAGTCATTGCCAACCACCAGTGCTGCCGATCAT
TATGCCTGCCCTCTCGATTGATACCTGTACGTCTCGATCTCGATA
Found at i:1013350 original size:21 final size:22
Alignment explanation
Indices: 1013313--1013354 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
1013303 GGTACTCATT
1013313 CAGGTGTTGATTCACTCGATGA
1 CAGGTGTTGATTCACTCGATGA
1013335 CAGGTGTTGA-TCACTCGATG
1 CAGGTGTTGATTCACTCGATG
1013355 CCGGTACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (22 bp):
CAGGTGTTGATTCACTCGATGA
Left flanking sequence: Indices 1012813 -- 1013312
GGACACAGTCATTGCTTGCATCGGCTGGACGAACACAGATATAGATAGATCCATCTCCCTCGACC
TCCACCTAGATCCTTTTCCTCTCGAAATAGACCCTAGACCTATACCCTCGACCCATTGTTCCATC
CGTTCAGTGCCATCCCGTAGGGTCCATCTCTGTCGGGTATGTCAGTCTGGCTATGACTAACAGCT
ATGATAGAGCTTTTTATTAGCTATGAGACTTGACTATGACCTTAGAGAAAACTAGTTTGAACAAC
TAGCACTACTACAACTTATGGGACGGGAGATTGCAACTATTAGGGCGTGAGATAGGCAACTCTAT
TGGGACGTGAGATTACAAAATGAGGTTACCAATTAGAGATTACACATTGAGTACTCAGAGAAGAC
ACAATGAGCTATACATAGTACGATAACGCCTCCACACACGGATTGCCAGGAGGTACGTGACACTC
ATAGCTGCTAGTCGAGCCAGGTAGGTGTCAATGCTGGTACTCATT
Right flanking sequence: Indices 1013355 -- 1013854
CCGGTACTCAATGCCAAGTGTAGATCCCCAGGAAGTGCCGATTACCAGTTCCCAATACCCGGGAG
AGAGACCCTCATTCCCAATCATAGCCCATAGCAGCCATTGCCCTCGAGCCATACCTCGACCTCAC
TTAATGCTATGGAACACACTTCCTACCTCGATTGGATTACATTACGATGCATCACTTATGGTGCA
CCTGTTTAGGGTCATACACCAGTCAGTCATTGCCAACCACCAGTGCTGCCGATCATTATGCCTGC
CCTCTCGATTGATACCTGTACGTCTCGATCTCGATACCCATCGCTTGATGCCCGTCATCTATGTA
ATCTGCCGCCTTACTGAGATCTCGATTTAGACCTGCCCGGATATCAATTTAGAACCGTTTCTCGA
CTCTCAAGGAGGGGATTTTTTTGTAAGCATGCTATAATAAAGGTGGTGCTTTGCTTATTGTTGGA
TAAGAAAATATCTAATGCAATCAGTATTGTTACTGCCTCTGTTAG
Found at i:1018517 original size:27 final size:27
Alignment explanation
Indices: 1018479--1018536 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
1018469 CGTAACCTCT
*
1018479 CCTCGACCTCGTAACCTCGGCCGAGTC
1 CCTCGACCTCGTAACCTCAGCCGAGTC
*
1018506 CCTCGACCTCGTAACCTCAGTCGAGTC
1 CCTCGACCTCGTAACCTCAGCCGAGTC
1018533 CCTC
1 CCTC
1018537 ACTTCTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.16, C:0.45, G:0.19, T:0.21
Consensus pattern (27 bp):
CCTCGACCTCGTAACCTCAGCCGAGTC
Left flanking sequence: Indices 1017979 -- 1018478
ACCTTGTCCAACTGCCCTGGTCTCTGCTTTCCGAACATTTGACGGCTATGTTCAACTTTGAGGAT
ACGCGTGCGTATGGATGACCTCGACCTTGTCGTAACTTCAATTCTTTGTCCAAAGAAAGGTCGGG
GGTTCTAAATAAAGCCAATAAGAAGTGTCTCACTCAATAGGATTCCAAAATACTGGCCCCAGAGA
TATAACTTGAAAGAAGCACGTATATAAAGGCCCATAAACAAAAAAGTCTTAATCCAGTAAGTGTG
TGTTATTTCCAAGCCTGTCCCGTAGAATATATAAGTTTTGTAAGTGAGAAAGTAAATAAGAGGTG
GTGAACACGACAGGTGGATAGGAAGGATCGTGGCACTTAAGTAATGCAAATAGGCTGCTGAAGAA
AGGGACGGAGTCACTCACTATTCAGATGGCGGCCTGTTGTTCTTCAAGTTCCTCTCTTTTGGGGC
CCCTCCCCCTTCTTTGGTCGGGAGCCGCCATCGTTCGTAACCTCT
Right flanking sequence: Indices 1018537 -- 1019036
ACTTCTTTGGGGAAGGTGAGCGATAAATCCCTCACCATATTCATAGTGAGTGACCCCTAAATAAT
ATAGGGCCCTCCGGACCTCACCTTTTGAGGGAAGGTGAGCAATAAATCCCTCACCATATTCATAG
TGAGTGACCCCTAAATAATATAGGGCCCTTCGGGCCTGTTGTCGAGAGTTCGGCAGGCTCACCCT
CGACCTCGTAACCTCAGTCGAGTCCCTCCGGACCTCTATTTTTGAGGAAATAGAGAGATAAATCG
ATGGCGGCCTTTGTCGAGAGTTCGGCAGGCTCACCCTCACCCCCTACCCCAAAAGAGAGTTGTTC
GTCTGATGGCGGCCTTTGTCGAGAGTTCGGCAAGCTCACCCTCACACGTTACCTCTCCTCGACCT
CCTCGGCCGAGTCCCTTCGGGCCTTTAGTCGAGAGTTCGGCAGGCTCACCCTCACCCTAACGGGC
CTTTTGTCGAGCAAGCCCCTACCGGTCCTTGCCCGATGCGGACAA
Found at i:1018674 original size:84 final size:84
Alignment explanation
Indices: 1018533--1018695 Score: 292
Period size: 84 Copynumber: 1.9 Consensus size: 84
1018523 CAGTCGAGTC
* *
1018533 CCTCACTTCTTTGGGGAAGGTGAGCGATAAATCCCTCACCATATTCATAGTGAGTGACCCCTAAA
1 CCTCACCTCTTTGGGGAAGGTGAGCAATAAATCCCTCACCATATTCATAGTGAGTGACCCCTAAA
1018598 TAATATAGGGCCCTCCGGA
66 TAATATAGGGCCCTCCGGA
1018617 CCTCACCT-TTTGAGGGAAGGTGAGCAATAAATCCCTCACCATATTCATAGTGAGTGACCCCTAA
1 CCTCACCTCTTTG-GGGAAGGTGAGCAATAAATCCCTCACCATATTCATAGTGAGTGACCCCTAA
1018681 ATAATATAGGGCCCT
65 ATAATATAGGGCCCT
1018696 TCGGGCCTGT
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
83 4 0.05
84 72 0.95
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (84 bp):
CCTCACCTCTTTGGGGAAGGTGAGCAATAAATCCCTCACCATATTCATAGTGAGTGACCCCTAAA
TAATATAGGGCCCTCCGGA
Left flanking sequence: Indices 1018033 -- 1018532
ACTTTGAGGATACGCGTGCGTATGGATGACCTCGACCTTGTCGTAACTTCAATTCTTTGTCCAAA
GAAAGGTCGGGGGTTCTAAATAAAGCCAATAAGAAGTGTCTCACTCAATAGGATTCCAAAATACT
GGCCCCAGAGATATAACTTGAAAGAAGCACGTATATAAAGGCCCATAAACAAAAAAGTCTTAATC
CAGTAAGTGTGTGTTATTTCCAAGCCTGTCCCGTAGAATATATAAGTTTTGTAAGTGAGAAAGTA
AATAAGAGGTGGTGAACACGACAGGTGGATAGGAAGGATCGTGGCACTTAAGTAATGCAAATAGG
CTGCTGAAGAAAGGGACGGAGTCACTCACTATTCAGATGGCGGCCTGTTGTTCTTCAAGTTCCTC
TCTTTTGGGGCCCCTCCCCCTTCTTTGGTCGGGAGCCGCCATCGTTCGTAACCTCTCCTCGACCT
CGTAACCTCGGCCGAGTCCCTCGACCTCGTAACCTCAGTCGAGTC
Right flanking sequence: Indices 1018696 -- 1019195
TCGGGCCTGTTGTCGAGAGTTCGGCAGGCTCACCCTCGACCTCGTAACCTCAGTCGAGTCCCTCC
GGACCTCTATTTTTGAGGAAATAGAGAGATAAATCGATGGCGGCCTTTGTCGAGAGTTCGGCAGG
CTCACCCTCACCCCCTACCCCAAAAGAGAGTTGTTCGTCTGATGGCGGCCTTTGTCGAGAGTTCG
GCAAGCTCACCCTCACACGTTACCTCTCCTCGACCTCCTCGGCCGAGTCCCTTCGGGCCTTTAGT
CGAGAGTTCGGCAGGCTCACCCTCACCCTAACGGGCCTTTTGTCGAGCAAGCCCCTACCGGTCCT
TGCCCGATGCGGACAAGCGACTACGTACCTTTAGCACACACTTATTCTGCGGGCAAATCTTATAT
ATATATATAAAGAGGTAATCATGCAAGGATTCCGAGGACTATGGAAGGATCTTTACCTTTCTATT
GATATCTTCGATTAATCTGAATCATATGAGGCGAATCCTACCAAT
Found at i:1022492 original size:17 final size:17
Alignment explanation
Indices: 1022470--1022504 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1022460 ATACATCTAT
1022470 AGGCAGCAAATATCAAA
1 AGGCAGCAAATATCAAA
1022487 AGGCAGCAAATATCAAA
1 AGGCAGCAAATATCAAA
1022504 A
1 A
1022505 CACCATACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (17 bp):
AGGCAGCAAATATCAAA
Left flanking sequence: Indices 1021970 -- 1022469
TAAGGTATCCTTCTTGGTCATTAAGAGGTGTCCTGCGGAGCTAACCACTGAGTGGAAGGAGGAAC
CCGATCTACACCTGCAGGTCATATATTGATAGCGGCAGTAGACCTACCCTCTTTCATAAGCTAAG
GTAAGGATGCTGCACCTTCCTATGAAGATAGGTCACCCTAAACTCAATCATTGTCGTCATTTTCT
TCACCTGCATGACTCGTTGTTTCATCCTTAGGTCATGTTCTTTCACTCTTCGACAGTGCTCTTTA
ATTGCTTTCTATAGGCAGGCATATGCTGCACCCTTAAATATCTAATTTGCTCTTATTATACTTAG
CATTCTCCTCAAGAGACTTCCTATACTCAAAAGAGAAAGAATAGCAAGTAGTTCATTCACTATAA
AGAACAACAATAATACCCCTGAGTATTATCATTATAATAGCATCAACTCAACCCATAATGACATC
TTCTAGCTACCAATTATTACATCTCAAGACATAGAATACATCTAT
Right flanking sequence: Indices 1022505 -- 1023004
CACCATACCATTAGGATAGGATTTCTTTTTAGATTAGGTATGTATGTTTAGGGATTAAGATTGAT
AAATCGATTATTCCGGAGAAAGAATTGGTGGTGCGAAATTAAGCAGGCTTATTTAGCAGGAGGCT
ACACCAGGGCTATGAAGCTGAAATGTTCCCCTAATTCCGATGCTCTTGTGGTGGTGTAGAGCTTT
TGTAGCCGCCGTAACTTGGTGTTGTTATCGGTAACGTGCACATCTTTACGCTTCCCCTGCTGCTG
GCCAAGTAATCTAGAGGGAGAGAACCCTTTGCTCATTGGGAGGTGACCCCATTATTCATGGTGCT
GCGGGCTCATAGGGCTACGTAATTGTTGTTAGAGATCCTTCTTGATTTGGTTGTTCCTAAGTCTA
CTAGTCTGCTGAGATCCATCTTTCTTTATTTGTAATACATAGTTCTAAGTTGGTGGAGTGTAAGA
CATAGTTGTTGGTTGGAGTGCTTAGTAAGACATAGTTTGAGGTTA
Found at i:1029584 original size:19 final size:20
Alignment explanation
Indices: 1029549--1029597 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
1029539 TTCAAACTGA
* *
1029549 CTGCCTGATAGACCTTGCTGC
1 CTGCCTGAT-CACCTTGCCGC
1029570 CTG-CTGATCACCTTGCCGC
1 CTGCCTGATCACCTTGCCGC
1029589 CTGCCTGAT
1 CTGCCTGAT
1029598 ACTGCCTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 12 0.48
20 10 0.40
21 3 0.12
ACGTcount: A:0.12, C:0.37, G:0.22, T:0.29
Consensus pattern (20 bp):
CTGCCTGATCACCTTGCCGC
Left flanking sequence: Indices 1029049 -- 1029548
ATCATGATCCGGGTAGTTAGGCTTAGGTTCTTATCTTCCATGATCCTCTTTTCCATGATCCGGAT
TCGTGTAATAGATCGGGATGGTTATTCCATGATCCGGGTAGTTGGGCTAGGGAGATCAGTCTTCA
TGATGGATTATAGGGAGATTAGGATTTATTCCACTAGGCCAGGGAGAATCACTAAACACTGAATT
GATTCCGATCAAGTATTGTTACTCACACAGATTGATTCATGGAGAGAAAAACATATCTAAGGGAA
GGAAAAGGTCTACTTTAGAGGAATACTTATTTTCTCTAAGGGTAAAGGATCTTTCTTGCTTTGGG
ATGTGAAAAAAAACTGGCATTGGGTTTATTCTATCCTAACCCACTGGTTGATATCTTATATATCA
ACTTGACAGGAGCAACTTGACAGCTACGGATTGCATGCCGGATTACAAGGGCTCTTCCCCTTGGG
GCTTCCTTTACTCCTTTCGAAAGCCACTTGCCCACTTCAAACTGA
Right flanking sequence: Indices 1029598 -- 1030097
ACTGCCTGACTGCTGCTTTCTTTGACCTTGCCAATTTACCGCTTAGATATAGACCTTGCCAACTA
ACGACTGCCAAGACCTTAGATCTGACGACCTGCCTTCATCGAACTTCGACCTGACCTGATATCGA
CGACCTCGATTGATACTCGAATCTTGCTACCACCCGTATCTCTCTTCTTGTCACCTGACTTCGAT
ATCTTTTGCGACCTTACGACGATGAAATAACTTTACGGAGCTGGCTTGCTTTGATGCTAGACCCA
CCACCCCGGTTGGTTATTGCTTTCTTACTCGCCTTAGCCCACCAAATGATCATATACAATCACCA
AATGACACCGTGGATTGCCCCCCCCCTAACTCCACCTGGTTTTTGTTTGCTAGCAGCTATATTTC
CGTGTCGGGAGGACGAAGGAAGAATCTATGCTATGTGGCGGGGTTTGAAACAGATAGATACCTGG
AAGGGCAGGTAGACATGTGGGTCCAAGTGAGCGATTGATTGACTG
Found at i:1030398 original size:21 final size:22
Alignment explanation
Indices: 1030363--1030404 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
1030353 CTCTATCCTT
**
1030363 AGTGAGTGAGCGGCTT-AGTGC
1 AGTGAGTGAAAGGCTTCAGTGC
1030384 AGTGAGTGAAAGGCTTCAGTG
1 AGTGAGTGAAAGGCTTCAGTG
1030405 AATGGCTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (22 bp):
AGTGAGTGAAAGGCTTCAGTGC
Left flanking sequence: Indices 1029863 -- 1030362
CCGGTTGGTTATTGCTTTCTTACTCGCCTTAGCCCACCAAATGATCATATACAATCACCAAATGA
CACCGTGGATTGCCCCCCCCCTAACTCCACCTGGTTTTTGTTTGCTAGCAGCTATATTTCCGTGT
CGGGAGGACGAAGGAAGAATCTATGCTATGTGGCGGGGTTTGAAACAGATAGATACCTGGAAGGG
CAGGTAGACATGTGGGTCCAAGTGAGCGATTGATTGACTGAAACCGAGACTGAAAACTAATATTG
TATCTATATCTCCTCGACCCCCAGTATGAGACCTTGGAAAACCCAGGAAAGCAAACACTACTATG
GGTTGAATCAAGAATGGGGTAATTCAGTGTCCGGGCCTTACCTACCTCCCCTACTATGGCCCATC
AGTTGAATCAATCACTATTTCTAATTGGTGACCACTTAAAACACTCGGAATACGTGCCCTGTGTG
GCACCTTTTGTAATACGTGTCCTCGCGGTATCTTCCTCTATCCTT
Right flanking sequence: Indices 1030405 -- 1030904
AATGGCTTTCTATGTGAGTTACCCATGTTCTCCAAAAAAAGAGATTGAGAAAAGTTGTTGCCATA
CGGAGCAAATCCGCCCAACACGGGGACGGTACAGTACAGTACGAAGCGGGGCAGGGCGGATGGCA
TCAATTGCCTTTTAGGTTGAGCACCTTTCTCCTTTCGCCTGGAACCTTTTGCCAGAAGCCTTTAC
CCTTTCACCTTTTGAATAAAGCTTGACTCAGGAACCTTTTGCCTGTAACTTCAGCCCACCTAACC
AAGTCCAACAAGCCTAAACAGGTCCAACAGATGACTTTACCCTTTTGCCTTAGCCTATCACCTTA
TTCCTTTAAACTTCTGCCTTTTGCCTTCATAAACAGCCAAGCCAAGTCCACGGATGCCTGTAACC
TTTCACCTTTTGCCTTAAACCTTTCACCGGGAAGGAGGAACCTATAAACTGAAGAAGAAGCAAGC
CTTTCACCGGGAGCCTTCAGCCCGAAACCTATCACCTGCCTTACC
Found at i:1034799 original size:6 final size:6
Alignment explanation
Indices: 1034783--1034815 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
1034773 TGAACAGATT
1034783 TCTCTCC TCTCCC TCTCCC TCT-CC TCTCCC TCT
1 TCTC-CC TCTCCC TCTCCC TCTCCC TCTCCC TCT
1034816 TGGGTTTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.20
6 16 0.64
7 4 0.16
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCTCCC
Left flanking sequence: Indices 1034283 -- 1034782
CTTAGATACGTATGCTTAATCATAGTAATCATTGAGAGCTTATTGGGGATACTAGTATATATGGA
ACGTGTATGAACTAAAGGTGATATCTGTGTTTCCATAATATAGAGGTATAAGTAATATAAACACT
ATACCTAAGCTATTGAGTATTGGTATTGGTTATGAGGAACATGAGTGATTACACTTAACTAGTAG
TGACTAATGGTTTACAAATGATAGCAACTACCCTTTGTTTCACATATTGTACGTTATAGGTAGTA
CCGTATTACATTGTATGCTATGAGTAAGCATAGGTAATCAGTAATATGTATTGTAACATCTTCAT
TATAAATGGTATTTGATCTATTGGAATTGAACCAATTGAGCTCTTAGTCATTAGTCATATGAATA
ATGACTGGAAGAAATGCCTAATTCAATATATAATAGCAGATTGGATTCGATCTCTCAAAATAGCA
TAATGACATATATAATATATGCTTTGGCGGAGGTTTGAACAGATT
Right flanking sequence: Indices 1034816 -- 1035315
TGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTA
CTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAG
GTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAA
GGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGG
TCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGC
ATCCTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACC
TAAAGGTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAG
TCGAGCATGCTTGCGCATCCTTATCAGTCGAGCACCTAAAGGTTA
Found at i:1034800 original size:11 final size:12
Alignment explanation
Indices: 1034783--1034815 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
1034773 TGAACAGATT
1034783 TCTCTCCTCTCCC
1 TCTC-CCTCTCCC
1034796 TCTCCCTCT-CC
1 TCTCCCTCTCCC
1034807 TCTCCCTCT
1 TCTCCCTCT
1034816 TGGGTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 5 0.25
13 4 0.20
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (12 bp):
TCTCCCTCTCCC
Left flanking sequence: Indices 1034283 -- 1034782
CTTAGATACGTATGCTTAATCATAGTAATCATTGAGAGCTTATTGGGGATACTAGTATATATGGA
ACGTGTATGAACTAAAGGTGATATCTGTGTTTCCATAATATAGAGGTATAAGTAATATAAACACT
ATACCTAAGCTATTGAGTATTGGTATTGGTTATGAGGAACATGAGTGATTACACTTAACTAGTAG
TGACTAATGGTTTACAAATGATAGCAACTACCCTTTGTTTCACATATTGTACGTTATAGGTAGTA
CCGTATTACATTGTATGCTATGAGTAAGCATAGGTAATCAGTAATATGTATTGTAACATCTTCAT
TATAAATGGTATTTGATCTATTGGAATTGAACCAATTGAGCTCTTAGTCATTAGTCATATGAATA
ATGACTGGAAGAAATGCCTAATTCAATATATAATAGCAGATTGGATTCGATCTCTCAAAATAGCA
TAATGACATATATAATATATGCTTTGGCGGAGGTTTGAACAGATT
Right flanking sequence: Indices 1034816 -- 1035315
TGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTA
CTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAG
GTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAA
GGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAGGG
TCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGC
ATCCTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACC
TAAAGGTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAG
TCGAGCATGCTTGCGCATCCTTATCAGTCGAGCACCTAAAGGTTA
Found at i:1035037 original size:26 final size:27
Alignment explanation
Indices: 1034997--1035056 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
1034987 TCAACCCTGG
1034997 GTCGAG-CACCTAAA-GGTCCTTATCA
1 GTCGAGCCACCTAAAGGGTCCTTATCA
*
1035022 GTCGAGCCCCCTAAAGGGTCCTTATCA
1 GTCGAGCCACCTAAAGGGTCCTTATCA
1035049 GTCGAGCC
1 GTCGAGCC
1035057 TGCTTACGCA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 6 0.19
26 7 0.22
27 19 0.59
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (27 bp):
GTCGAGCCACCTAAAGGGTCCTTATCA
Left flanking sequence: Indices 1034497 -- 1034996
GATAGCAACTACCCTTTGTTTCACATATTGTACGTTATAGGTAGTACCGTATTACATTGTATGCT
ATGAGTAAGCATAGGTAATCAGTAATATGTATTGTAACATCTTCATTATAAATGGTATTTGATCT
ATTGGAATTGAACCAATTGAGCTCTTAGTCATTAGTCATATGAATAATGACTGGAAGAAATGCCT
AATTCAATATATAATAGCAGATTGGATTCGATCTCTCAAAATAGCATAATGACATATATAATATA
TGCTTTGGCGGAGGTTTGAACAGATTTCTCTCCTCTCCCTCTCCCTCTCCTCTCCCTCTTGGGTT
TACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATT
GGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTC
TCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGG
Right flanking sequence: Indices 1035057 -- 1035556
TGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAA
CAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAG
GTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTAT
TGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTATCAGTCGAGCACCTAAAGGTTAG
GGTTTACTTATTGGTTTGGCTCTCCTTCACAGTCGAGCCTGCTTGCGCATCCCCTCCTCTCAAAT
AAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATTAGGTGAGTGCTGCTA
CGCACCCTTCCCCTCCTCTCAATAAGTAACCAAAGGCAGTCGAGTTGCTTACGCACCCTCACCAT
ATGGAAGTGCGTGTTCTCCGCCTTAAGTTCGATAGGGGGCCTTTC
Found at i:1035230 original size:25 final size:25
Alignment explanation
Indices: 1035163--1035237 Score: 125
Period size: 25 Copynumber: 3.0 Consensus size: 25
1035153 CCTCTCCCTC
1035163 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
**
1035188 TCCTT-AGGGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
1035212 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
1035237 T
1 T
1035238 TAGGGTTTAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 22 0.49
25 23 0.51
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 1034663 -- 1035162
CATATGAATAATGACTGGAAGAAATGCCTAATTCAATATATAATAGCAGATTGGATTCGATCTCT
CAAAATAGCATAATGACATATATAATATATGCTTTGGCGGAGGTTTGAACAGATTTCTCTCCTCT
CCCTCTCCCTCTCCTCTCCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTC
GAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCAT
CCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGT
CAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCG
AGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGG
TTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCTCTCCCTC
Right flanking sequence: Indices 1035238 -- 1035737
TAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTATCAGTCGAG
CACCTAAAGGTTAGGGTTTACTTATTGGTTTGGCTCTCCTTCACAGTCGAGCCTGCTTGCGCATC
CCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATTA
GGTGAGTGCTGCTACGCACCCTTCCCCTCCTCTCAATAAGTAACCAAAGGCAGTCGAGTTGCTTA
CGCACCCTCACCATATGGAAGTGCGTGTTCTCCGCCTTAAGTTCGATAGGGGGCCTTTCGAATTG
CCGGCAGCCTCATATTTCATATATTTTTATTATGTCATTACGGTATGATCGGGAATTTCATGACG
ATCTTCCTGCCTGAATGAGGATATGATTACGCTTTAGCGGATCATGCATATATTATATATGTCAT
TATGCGATGAATGAATGGATATGTCAATTACGCTTTTAGCGGTAT
Found at i:1035749 original size:67 final size:62
Alignment explanation
Indices: 1035653--1035827 Score: 212
Period size: 67 Copynumber: 2.7 Consensus size: 62
1035643 TGAGGATATG
*
1035653 ATTACGC-TTTAGCGGATCATGCATATATTATATATGTCATTATGC-GATGAATGAATGGATATG
1 ATTACGCTTTTAGCGGATCATGCAT-TATTATATATGTCATTATGCTGAGGAATG-A--G-TATG
1035716 TC
61 TC
1035718 AATTACGCTTTTAGCGGTATCATGCATTATTATATATGTCATTATGCTGAGGAATGAGTATGTC
1 -ATTACGCTTTTAGCGG-ATCATGCATTATTATATATGTCATTATGCTGAGGAATGAGTATGTC
*
1035782 ATTACGCCTTTAAGCAGGATTCATGCA-TATTATATTATGTCATTAT
1 ATTACG-CTTTTAGC-GGA-TCATGCATTATTATA-TATGTCATTAT
1035828 TGCTATTTTG
Statistics
Matches: 100, Mismatches: 2, Indels: 15
0.85 0.02 0.13
Matches are distributed among these distances:
63 6 0.06
64 21 0.21
65 21 0.21
66 7 0.07
67 29 0.29
68 16 0.16
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (62 bp):
ATTACGCTTTTAGCGGATCATGCATTATTATATATGTCATTATGCTGAGGAATGAGTATGTC
Left flanking sequence: Indices 1035153 -- 1035652
CCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTA
ACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCATGCTT
GCGCATCCTTATCAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGCTCTCCTTCACA
GTCGAGCCTGCTTGCGCATCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACG
CACCCTCACCATATGAATTAGGTGAGTGCTGCTACGCACCCTTCCCCTCCTCTCAATAAGTAACC
AAAGGCAGTCGAGTTGCTTACGCACCCTCACCATATGGAAGTGCGTGTTCTCCGCCTTAAGTTCG
ATAGGGGGCCTTTCGAATTGCCGGCAGCCTCATATTTCATATATTTTTATTATGTCATTACGGTA
TGATCGGGAATTTCATGACGATCTTCCTGCCTGAATGAGGATATG
Right flanking sequence: Indices 1035828 -- 1036327
TGCTATTTTGAGGAGATCGAATTCAAGTCAGTTTCTGCAAAGCGCCTGAACTCTAAGAACTTTGA
GAGAAAGCGCTCCCTCGGCGAGGGACAACACTCCGTTAGAGCTAATTCCTCCGAGCTCTCAAACT
AGAGGGGTCGGCCGTATCTCAAACAGATATAGAGACAGAGCATGTGCTTCGGCTACGCTAGCGAA
GCTTTCTCTTTCGCTACCACATGCTCATATATTAACTACTACCATTACCAATGACTGGTTCTTTT
CTCTCTAAGGCTAGGGAAATCCTATCATTATATTGTCATTACGGCGCAATGAATTGGATTTCAGT
TCAATTGATTTTGGTGCCCCTCTCAAATAAGTAACTAGCGTTTGGTCAAGCGATGGCGGCCTTAT
TTAGTCGAGCGTCGTACTCACCTGCCGGGGGGCACCCTACTAATTTGGCCGATTTTCTCTGGCGG
AGGTTTTTCAATATTCCCCTACTATTATAGCATTTTCAGGAGGCG
Found at i:1038754 original size:12 final size:12
Alignment explanation
Indices: 1038737--1038761 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1038727 GTAGAGTATG
1038737 GATATGCACCTT
1 GATATGCACCTT
1038749 GATATGCACCTT
1 GATATGCACCTT
1038761 G
1 G
1038762 GAATGGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (12 bp):
GATATGCACCTT
Left flanking sequence: Indices 1038237 -- 1038736
GGAGCTACCTACGACCTGGCACGAGCTTCCGCCCCCTATCCAGCTCCCATAACTATGGCATGTAC
TAAAACACGGAACAAGGTAGGATGTGTATGAAATTGGAACAGGCTAGCATATGCCAGATGCGGGT
GACCCAGAGCTTCCAACAGCAGATTGAGTAACAGATGATGCCTATCCAAAGCGAGTATATTCACC
CGCAGAGGCAAAGGTAAAGGCCAATGCGCTAGTGAAAGATTCAGTTTACCGATCTCCCAGCATCC
CTACCAGCAGGAGCACAGCCACTTGCAGATGCATACGCAGTTCCTGGTCCGCGGCATGCATACCT
TCTATATCGAGAGCTAGTAACAGAGGTTAAGGCTGCATAGAAGCACGCAAGGGCTTCACCAATTG
AAGTTGATCCGGCAGAAGCAAAGGTAAAGCCAGCCAGCTTAAGGTAAAGGTTGCATGGACGGCCT
CTATTTATGCCGTGGGTGGAACGGGATCTACTGGCGTAGAGTATG
Right flanking sequence: Indices 1038762 -- 1039261
GAATGGAACTACAGACTCTCGATCCCAAACTTGAACTGGAAATGAAAGCGCGTATCTTTACCAAC
TACTGATTATAGTGCAGGTCCGCTGGTAGCTATGATGCCGATGGGCGTGGTGCTCCTACCTTCGC
TTCCATCTCTGTTGCTAGTGGTGGTTCAACCGCTTCAACCGAATCTGCTACTGATGCTTTCATTC
GATCAAATGCAACCGTCTCTACCACTGGTGACTCGTACTCTGTAGCTTATGCTGCGGGCTCTATC
TTCGCCTGTGCCTCTGCTATCTACCCAATGCCTTTATATACGAGGCATTCGTAACTGAAATGACG
AAGAAAGGAGCCGGAGTGATGCAGCTAATAGATATTTTGATAAGCTCAAGCATGTGATGTGCTCA
TGCCCTGTACTTACCATTCTCGATTTATCACTACCATTTGTTTTTTAGTGTTATGCTTCAGGTGA
GGGGATCGGAGCTGTGCTTATGCAAAAGGGCCAACCACTAGAGAA
Found at i:1039837 original size:27 final size:25
Alignment explanation
Indices: 1039807--1039864 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 25
1039797 ACGTTAGTGA
1039807 CTCGACTGATAAGGACCCTTTAGGGGG
1 CTCGACTGATAAGGA-CCTTTA-GGGG
*
1039834 CTCGACTGATAAGGACCTTTAGGTG
1 CTCGACTGATAAGGACCTTTAGGGG
1039859 CTCGAC
1 CTCGAC
1039865 CCCAGGTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.30
26 6 0.20
27 15 0.50
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (25 bp):
CTCGACTGATAAGGACCTTTAGGGG
Left flanking sequence: Indices 1039307 -- 1039806
TATGCATGCTTCGGAGAAGTTCAAGCAATATTGAGTTTGTGGAAGATTTGTGGTGTGAACAGACT
AGTTTTCAGTTTTGATTGGGCCAACGTTACTTAAATGATCGGCAACAGAAGTGGGTAAGTAAGCT
TCAAGCTTATGATTTCGACATTTTTGATGTGAAAGGTGAGAAGAATGTGGTTGCTGACGCTCTTT
CCAGTATGCCTACTTTAGAAAGTTCAAAAGCATAATTACATATATAATATATGCATTGTCGAAGA
TCAGGTTATCACTTAAAAAATCTTTTCTTAACCAAAGGCCCGGTAGGCCCGGTAGGGTGAGCCTG
CCGAACTCTCGACTATAAGGCCGCCATCGACTCACCGATTCATATGGGTGAGGCCCGGAGGGACT
CGACTAAAAGGAGAGGCCCGGTAGGGTGAGGGTGAGGTAACGAACTCTCGACCTATGCTAGTTAC
TTATTTGAGAGGGGCACCCAATAAGTCAAATGAATACGTTAGTGA
Right flanking sequence: Indices 1039865 -- 1040364
CCCAGGTTTACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGTACGTTAGTGACTCGA
CCATAGGGAGAGGAACGAACGCTCGACTATAAGGAGAGGGACTCACTATTGGTGAGGAGCAACTC
TCTTTTGGGGGAGGGAAAATAGAGGATGCGTAAGCATGACTCGACCACCGCCATCAACTCGAAGA
ACTAAAAGGCCGCCATCGCATTTCATCATACTATGAATCCTTCCCAGGGCTCTTTCTCCTTGCCT
AGATATGTTTATTGATACTTATATGCAGGGAAGGTTCGCCTTACCTTCCTTTCCTTTCCTTCCCG
GTAACGTGTCAGCCTGCCTCTCTCCTTCCGTCCATCGGGGTTCAACCTGCTCTGTTGTTGGCTCT
GTCTGTTGGACCACCCCTATCGTCCCACCCAGGTCAAATAGACAACACCCATCATCGGTGCACTA
AGACTCCTGGCATAAGACTCCTGGCATAAAACTAATGGTGGGCGG
Found at i:1040337 original size:14 final size:14
Alignment explanation
Indices: 1040318--1040348 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
1040308 ATCGGTGCAC
1040318 TAAGACTCCTGGCA
1 TAAGACTCCTGGCA
1040332 TAAGACTCCTGGCA
1 TAAGACTCCTGGCA
1040346 TAA
1 TAA
1040349 AACTAATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (14 bp):
TAAGACTCCTGGCA
Left flanking sequence: Indices 1039818 -- 1040317
AGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCCAGGTTTACTTATTGG
GTGGGGCAATAAGTAAACCCAAGAGGAGAGGTACGTTAGTGACTCGACCATAGGGAGAGGAACGA
ACGCTCGACTATAAGGAGAGGGACTCACTATTGGTGAGGAGCAACTCTCTTTTGGGGGAGGGAAA
ATAGAGGATGCGTAAGCATGACTCGACCACCGCCATCAACTCGAAGAACTAAAAGGCCGCCATCG
CATTTCATCATACTATGAATCCTTCCCAGGGCTCTTTCTCCTTGCCTAGATATGTTTATTGATAC
TTATATGCAGGGAAGGTTCGCCTTACCTTCCTTTCCTTTCCTTCCCGGTAACGTGTCAGCCTGCC
TCTCTCCTTCCGTCCATCGGGGTTCAACCTGCTCTGTTGTTGGCTCTGTCTGTTGGACCACCCCT
ATCGTCCCACCCAGGTCAAATAGACAACACCCATCATCGGTGCAC
Right flanking sequence: Indices 1040349 -- 1040848
AACTAATGGTGGGCGGAATGGGAATGCGCGGATGCGTGGCGTGTATGGCTTGTATGCGGCTTTAA
GGAATGCGTACTCGTATTGGTACGCGAGAAGGGTCAGTTGGAACTCCCGGAATCCTCATCAGTAT
AGAGAATCCAATTGAATCAATGCTTCCTCTGCCGTCGAGGCGTCCTGTGCCTTCCTGGGTTGGCT
GGGGCAGGCGTACGTAAAGCGAAGTAAATGGGGAATGCTGGGAGAAAGTAAGAACGCGGGTATGT
GGTGGGAATGGCGGGCTGACTGAATGCGGTAAAGTGAACTGAAAGTGTAATGGTAGAAAGCGGGA
CTGGGGAATGCTGGTGAACGCTTTTCTTGTCAGCAGTATAAGTGACCTCCTCTCCAGGAAACATC
TATCGGTTCACAGTTCAGTGGCTTTCAGACGAACTGTGGCTATCAGACGACTCCCAGTGCGTTGT
TGGTAACAGCGGGTGTGATGCCAGCAGCCTCGGGTTGTCAGGTCT
Found at i:1042869 original size:13 final size:13
Alignment explanation
Indices: 1042851--1042876 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1042841 ATCTATCAAT
1042851 CTATAGATACGGA
1 CTATAGATACGGA
1042864 CTATAGATACGGA
1 CTATAGATACGGA
1042877 TGAAGCTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
CTATAGATACGGA
Left flanking sequence: Indices 1042351 -- 1042850
TCAACTAGGCTGGAAACAGTTCTTCCTAGAAGTTCTTTTCGGTGCAGCATGAAGCTGCTCTTGTC
AGTGCATTAAGCTCTAGTCAGTGCTGTAACAGTCATATCATTAAGTTCTAGTCAGTGCCAGTCAA
TCATAGTCAGAAGGAGCCGATCATTGCCGATAGACACACATAGCTGGTTCTATTTGCCTGATGGG
CAGTGTTGCTTATAGTCCCTAGTCGAATGAATGAATGAAGGGTAGGCATATTTGTTACTTACGCT
ATTATGACGAATCCCGATGATGCCTATCTGTTGCATAACCCCACCTACCCTGGATCCGATATTCG
TTCATCCATGGCTGCTGCTCACCTAACCCACAGTGGTTGGGTTTCGGGCAAAAGACAGATTCTAT
CTATACAATCTATAGATAAAGATGAAGCTTACTAGTTGACATCTACAGATGAGACTTACTAGTGT
GGTACCTCTACGGAGGAGGCTTACTTACAGATTCTATCTATCAAT
Right flanking sequence: Indices 1042877 -- 1043376
TGAAGCTTACTAACGGATCACAGCGTGTCTCTAGATGAAAGCGGATCGGATAAGCAAGCTTGTTC
TATAAACCACCTAATCTTGAACGAACGAAAACGGGATCGGATAAGCTTGTCTCTAGAAACCACCT
AATCTTGTCGGGAACTAAGCGGCTACTTTTATCTAGATGATAGAAACCAAACCTCTCTAGACGAA
ACCTAATCTTTGAAGCAACTGATGCGGCTAGCTACTGGATAAACTGGTGCTGCTACTAATGGATG
GATCAAAATATGAGAATGAACTCGCTCAGGTCGCATACCTCAACTAATGCCAAGAATCGATCTCC
TAGCTTTATTTCAAGTCTCTGAGAGGGTAAGTAGCCTCCCACTCGCTCCCACCCACCACCCGGCT
CGTGGACAAATCAAATTATTGATTACCCCATGCTCGTATATAACTCGTATCGTTAACGTGCCTCG
ACAGACTCTATGGCTTATGAATCACAATCAGCCTTCCAGCGCCTT
Found at i:1043126 original size:25 final size:24
Alignment explanation
Indices: 1043088--1043135 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
1043078 TCTTTGAAGC
*
1043088 AACTGATGCGGCTAGCTACTGGATA
1 AACTGATGCGGCTA-CTAATGGATA
* *
1043113 AACTGGTGCTGCTACTAATGGAT
1 AACTGATGCGGCTACTAATGGAT
1043136 GGATCAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (24 bp):
AACTGATGCGGCTACTAATGGATA
Left flanking sequence: Indices 1042588 -- 1043087
TAGGCATATTTGTTACTTACGCTATTATGACGAATCCCGATGATGCCTATCTGTTGCATAACCCC
ACCTACCCTGGATCCGATATTCGTTCATCCATGGCTGCTGCTCACCTAACCCACAGTGGTTGGGT
TTCGGGCAAAAGACAGATTCTATCTATACAATCTATAGATAAAGATGAAGCTTACTAGTTGACAT
CTACAGATGAGACTTACTAGTGTGGTACCTCTACGGAGGAGGCTTACTTACAGATTCTATCTATC
AATCTATAGATACGGACTATAGATACGGATGAAGCTTACTAACGGATCACAGCGTGTCTCTAGAT
GAAAGCGGATCGGATAAGCAAGCTTGTTCTATAAACCACCTAATCTTGAACGAACGAAAACGGGA
TCGGATAAGCTTGTCTCTAGAAACCACCTAATCTTGTCGGGAACTAAGCGGCTACTTTTATCTAG
ATGATAGAAACCAAACCTCTCTAGACGAAACCTAATCTTTGAAGC
Right flanking sequence: Indices 1043136 -- 1043635
GGATCAAAATATGAGAATGAACTCGCTCAGGTCGCATACCTCAACTAATGCCAAGAATCGATCTC
CTAGCTTTATTTCAAGTCTCTGAGAGGGTAAGTAGCCTCCCACTCGCTCCCACCCACCACCCGGC
TCGTGGACAAATCAAATTATTGATTACCCCATGCTCGTATATAACTCGTATCGTTAACGTGCCTC
GACAGACTCTATGGCTTATGAATCACAATCAGCCTTCCAGCGCCTTATTTGATTTATTTACTACT
CCCAGAACTTATGAGAAGACACGGACGGGTGCATTATTGGATCGATTCCACGAGGACAGGACCTT
TTTGTAGCTTACCTTTATACCCATGCTCCCCCCGATTCTGGATTACATAGCCAGCGGGGCGGCTG
GATGGATGGGTGGGGACAGACCTTTTCTTAGAAGTACCAAATTGATTTTCAATTAGCCGAGGAAA
AACTTGTTGGAGCTTCCCATGCTCCCCCGCGGGATTTTAGATTAG
Found at i:1045457 original size:18 final size:19
Alignment explanation
Indices: 1045421--1045457 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1045411 CCAACACAGG
*
1045421 TCGTTCATCCTAGGGCTAC
1 TCGTTCATACTAGGGCTAC
1045440 TCGTTCATACTA-GGCTAC
1 TCGTTCATACTAGGGCTAC
1045458 AAGGAAAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (19 bp):
TCGTTCATACTAGGGCTAC
Left flanking sequence: Indices 1044921 -- 1045420
TAATATACGATATTATGCTTGCCTTATGACTTGCTACAAGGTGGGAAAAGGTGGGGGCTTGCCTT
ATGACTTGTAAAGCGTGCGCCCGGGGAGAATATATTGATTACTCACTGTCGGGGATAGATTCATT
TAGGGATATGGATAGGGTTACCGCTAGTGTGCTTCGGGATAGATTGATTATTCCAGCTAATATAG
AATAGCGAGAAAATAGCCACACTCTTTGCCATACTCTCGCCTTGCCTTATGATACGTTTCCCTTC
TAATTATACGTATGGGCTATTCATACCAGTTACCAGTCAGGTTGTACCACTTCCTACGTTCTCCC
TTCGAAAAGAATCAAAGGCGTTGAAAAGATAAGGAGATTGATTACTCATCCCAATTGCTACTACC
AGTCCTGTTGCTCTACGTTCATACCAATAAGGTTGGTTGTACCAGTAAGGTTGTACCGCTTCCTA
CCTGTTTCTATCCGTTCATACCTAGAAGAAAAGGTCCAACACAGG
Right flanking sequence: Indices 1045458 -- 1045957
AAGGAAAGGTTACTAAACACTCTTGCCTTATCTCTAGCTGTAGGGTAGAGGTCTCTATCAGTCCT
TGTATGTCAGTGTATGTCTGGTTGAGTGGGTACCTAGCAAGCAGTAAGAAGGAAGTCATAGCCAG
TGATTGTGGTACGAAATGCTCATAATGCCACTCGATTTTTAAGGCGCAAAAGAAATCGAAGTCGG
AGATGGAACTATTGCTTCAGCAGGATCCAATCTTGGTATTGGAGTTTGGTCAAGCATTTCTGGTA
GGCTAGTTGATGCCCTCCCTTTCATTCCAGGCTGGCGATAGCAGGCGATAGGAAGCCAATAGGGC
AGGCAATAGTGGCATAGGTCGATAGGGGGAAAAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCA
AGGACCCGACAGGGGGCTCGACTGATAAGGAGAGGAAGATCACATAGAATAGCTAAGGTGCGAGT
ACTCAATATGGTTAGATGCTTCCCCACGGAAGAGCTCCGCTATCA
Found at i:1046282 original size:27 final size:27
Alignment explanation
Indices: 1046245--1046303 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
1046235 TAGTGAGTGA
1046245 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
1046272 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
1046299 CCCCT
1 CCCCT
1046304 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 1045745 -- 1046244
CAGGCTGGCGATAGCAGGCGATAGGAAGCCAATAGGGCAGGCAATAGTGGCATAGGTCGATAGGG
GGAAAAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGACCCGACAGGGGGCTCGACTGATA
AGGAGAGGAAGATCACATAGAATAGCTAAGGTGCGAGTACTCAATATGGTTAGATGCTTCCCCAC
GGAAGAGCTCCGCTATCACCTAATAGACTGCAATTAGACTATCGGATAGAACTATTTATGAGGAT
GTGACTACAGTAAATAATTCATAGAGAAAACATGCACACGTTGGTAGGTCGGCTCACCGCTTTTG
GTTTTTATGTTATAAATACATATCTGCTGGCACACCTTTCATTCATTCAATATCTATTTCCCCGT
CTGCTCTGTCTGAGATGGCTCTTCCCGCCCGCATCCTTCCAATAGCGCTTCCCGTTTTTCTTTCT
TTCGTGAGTGGAAGTCAAATCCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 1046304 -- 1046803
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAA
AGGCAGTCGAGTGTGCGTTAGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTAAG
AAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTTGGCTTATTTCGAGCCGT
AGTTTGCTTTGAGCTGAGCCTATGTTTCTTTCCTTCTCGAGGAGTTGCTAGCGAAGTAGAATAGC
ATATAGCATAAGTAGAATAAAGGCAGGAATGAAAGCCGACAAGGTGCGAAGCCGCTTGTTCCCTC
CGGGGGACAAGGAATTCGGAAACTCTAATAAGGAGGGCAACCGGAAGGATCTGGCTGGGATAAGA
TAAAGATGCTGGGCTCACTCTAAGATGGGAAAGGGATGGATAACG
Found at i:1046313 original size:27 final size:27
Alignment explanation
Indices: 1046255--1046325 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
1046245 CCCCTCTCCT
*** *
1046255 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
1046282 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
1046309 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
1046326 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 1045755 -- 1046254
ATAGCAGGCGATAGGAAGCCAATAGGGCAGGCAATAGTGGCATAGGTCGATAGGGGGAAAAAGGT
CCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGACCCGACAGGGGGCTCGACTGATAAGGAGAGGAA
GATCACATAGAATAGCTAAGGTGCGAGTACTCAATATGGTTAGATGCTTCCCCACGGAAGAGCTC
CGCTATCACCTAATAGACTGCAATTAGACTATCGGATAGAACTATTTATGAGGATGTGACTACAG
TAAATAATTCATAGAGAAAACATGCACACGTTGGTAGGTCGGCTCACCGCTTTTGGTTTTTATGT
TATAAATACATATCTGCTGGCACACCTTTCATTCATTCAATATCTATTTCCCCGTCTGCTCTGTC
TGAGATGGCTCTTCCCGCCCGCATCCTTCCAATAGCGCTTCCCGTTTTTCTTTCTTTCGTGAGTG
GAAGTCAAATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 1046326 -- 1046825
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCGTTAGC
ACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAA
CGCTCGACCCCCGGGAGAGGGCCCTTGGCTTATTTCGAGCCGTAGTTTGCTTTGAGCTGAGCCTA
TGTTTCTTTCCTTCTCGAGGAGTTGCTAGCGAAGTAGAATAGCATATAGCATAAGTAGAATAAAG
GCAGGAATGAAAGCCGACAAGGTGCGAAGCCGCTTGTTCCCTCCGGGGGACAAGGAATTCGGAAA
CTCTAATAAGGAGGGCAACCGGAAGGATCTGGCTGGGATAAGATAAAGATGCTGGGCTCACTCTA
AGATGGGAAAGGGATGGATAACGAGACGGTGCCCAACAAAATAGA
Found at i:1050723 original size:27 final size:27
Alignment explanation
Indices: 1050685--1050743 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
1050675 TTCCTAGTGC
*
1050685 AAGGACCCTTTAGGGTGCTCGACTGAT
1 AAGGACCCTTTAGGGGGCTCGACTGAT
*
1050712 AAGGACCCTTTAGGGGGCTCGACTGTT
1 AAGGACCCTTTAGGGGGCTCGACTGAT
1050739 AAGGA
1 AAGGA
1050744 GAGGAGAGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (27 bp):
AAGGACCCTTTAGGGGGCTCGACTGAT
Left flanking sequence: Indices 1050185 -- 1050684
GTTCGCTGTGGGACGGGTGAACCTCTTCAGTTGTAACTGTGGGCATTCGGTGAACGTCCCTAGCT
CTTGGTGGGATGGCTCTTGTAGGTCTCCAGGTCGAGGAGGGAAAATCGATCGGGAAATATATATA
ACCTGCCCGAGCCTTCCTTCCCTACTCTTGCTGCTGGTAATTATATATGTTATTACGCTTTAGGC
TCTCATAATTGAGCGTACCCTAATAGAATCATATTTGATATAAAGAGATCTCTCATTATATATGT
AATTACGCTTTAGATCCTATAGCATAATATTGATAGAATATCATAGCTATCTTGGATCCGATAGG
CTCGTAGATAATTACACTCCGGAGGGCTGAACATCTCGAATCAAGACCTGATCGTCATTACATAT
CTCATTCATTCACCGTAATTACATATATAATATATGCGTTGTCTGCTAAAGCGTAATTACATATA
TAATAGCGGCATTAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGC
Right flanking sequence: Indices 1050744 -- 1051243
GAGGAGAGGAGAATTCAGTTTCTTTTCTAGCTACGCTTTCAACCTTCGACTCAAACCTATGAGTC
CCGGGTTCTTTCCTTCATATAAGGGGAAGGACCAAAAAGAGAAGGAGCTAGTGTTACAGTTATAA
TTAATGGCAAAAGCTGGCTAACGTTGGTATAAGCTGTATAAGCTGGCTAACGGTGGTCATCAATG
GTCAACCCTGATATCTTGGTGAAACCCGATTAGGAAAGATATCTGGGCGGGAAAGATGCAATAGT
GACTCCTCGGGGGTATCGCTTCGCTCAACACTCGTTACCCCCTCGTCTTAACTGATTGAACTGGT
AAAGGTTCGGAAACCCATGAACGGTTCGGTACGATTACGGCTCGGGAATAACCTCGCTAACAGTG
GGGTGCAGGCCCGCCTCCTTAACATAAGTAGTCGACAATAGATCGAGGCTCCCTTAACATAAGTA
CTCTCGGGCTTTATATCAGGGCATTGGTGAAGCAAGACAGATTAG
Found at i:1053850 original size:26 final size:26
Alignment explanation
Indices: 1053814--1053870 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
1053804 TATAGATGAA
1053814 GGATTCTGCACCCTCCAACATCCTTC
1 GGATTCTGCACCCTCCAACATCCTTC
1053840 GGATTCTGCACCCTCCAACATCCTTC
1 GGATTCTGCACCCTCCAACATCCTTC
1053866 GGATT
1 GGATT
1053871 GTCCTAACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.19, C:0.39, G:0.14, T:0.28
Consensus pattern (26 bp):
GGATTCTGCACCCTCCAACATCCTTC
Left flanking sequence: Indices 1053314 -- 1053813
GGGATGTAGGAACACGAGTTAATGCTTAAACCATGCTTTTTGGAACACTAGTAGAACAAGAATAG
AATTATACCCAACTCAGTAGTACAGTCCCTCTCCCGATGGTCGAGTGACCCCTAAGTAATAAATA
TAGGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGCGGAGCCAC
TCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCA
CCATTCCGATGGTGAGGGGTCACTCACTCATTCCGATGCCCACCACCCAATAAGCATCAAGGAAG
GCAGGGCTCTCAATATAAGGCCGCCATCGCTCGACTAACAGGACCCTTTAGGGGGCTCGACTGAT
AAGGAGAGGAGAGGAACTGGAGAAGAATATCGTATACAAAGAGATATCTCATTATATATGTCATT
ATGCATTTCAATTGCCCTACCTTTGGTTTCTCTTTTATAGATGAA
Right flanking sequence: Indices 1053871 -- 1054370
GTCCTAACCCCTTTGGTTTTCTTCCTTTCCAGACTCAAATCATTTGAACAAACCACTAATCTACG
GACATGAAAATTCGATCTCCAGACACACCATACACAAGACACTAATGGTATGATTTGGGAACCTA
CCTAATCGAGCGGGGTACCCAGCTTGGGCGTGTCAAGTAGCCGTAAAACGCACGCAAATGGGCCT
TTAAGACTATATTCCACGGGCTCTCGATGCATGCCTGAAGCAAGGACCTTTAGGTGCTCGACCAT
AAGGACCTTTAGGTGCTCGACTGATAAGGATGCGTAAGCAGGCTCGACTGTCAAGGAGAGGACCG
GTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGT
GCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGG
CTCGACTGATAAGGAGAGGAGAGGGGCGGAGCCACTCACTATTCA
Found at i:1054139 original size:24 final size:25
Alignment explanation
Indices: 1054107--1054160 Score: 92
Period size: 24 Copynumber: 2.2 Consensus size: 25
1054097 TGCCTGAAGC
1054107 AAGGACCTTTAGGTGCTCGAC-CAT
1 AAGGACCTTTAGGTGCTCGACTCAT
*
1054131 AAGGACCTTTAGGTGCTCGACTGAT
1 AAGGACCTTTAGGTGCTCGACTCAT
1054156 AAGGA
1 AAGGA
1054161 TGCGTAAGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (25 bp):
AAGGACCTTTAGGTGCTCGACTCAT
Left flanking sequence: Indices 1053607 -- 1054106
CGATGCCCACCACCCAATAAGCATCAAGGAAGGCAGGGCTCTCAATATAAGGCCGCCATCGCTCG
ACTAACAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTGGAGAAGAATATCGT
ATACAAAGAGATATCTCATTATATATGTCATTATGCATTTCAATTGCCCTACCTTTGGTTTCTCT
TTTATAGATGAAGGATTCTGCACCCTCCAACATCCTTCGGATTCTGCACCCTCCAACATCCTTCG
GATTGTCCTAACCCCTTTGGTTTTCTTCCTTTCCAGACTCAAATCATTTGAACAAACCACTAATC
TACGGACATGAAAATTCGATCTCCAGACACACCATACACAAGACACTAATGGTATGATTTGGGAA
CCTACCTAATCGAGCGGGGTACCCAGCTTGGGCGTGTCAAGTAGCCGTAAAACGCACGCAAATGG
GCCTTTAAGACTATATTCCACGGGCTCTCGATGCATGCCTGAAGC
Right flanking sequence: Indices 1054161 -- 1054660
TGCGTAAGCAGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGAC
CGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCT
TTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGA
GCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTGATATGGT
GAGGGTGCGTTAGCACACTCGACTGCCTTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGAATG
CTTCCTCGTGTTCTGTATGGCGGTGCCCTTACATTATATATGAGCATGTGGTTTCACAAGCAGCT
TTTCGATCAAATTCATTGGCTGCCGTAATGACATATATAATGAGAGTGATTTCCTAGCTAGAGAG
AAGAAAGACCATTCATTGTTATGGTGGTAGTTATATATGAGCATG
Found at i:1054310 original size:27 final size:27
Alignment explanation
Indices: 1054293--1054351 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
1054283 AGGACCCTTT
* *
1054293 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
1054320 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
1054347 AGGGG
1 AGGGG
1054352 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 1053793 -- 1054292
GGTTTCTCTTTTATAGATGAAGGATTCTGCACCCTCCAACATCCTTCGGATTCTGCACCCTCCAA
CATCCTTCGGATTGTCCTAACCCCTTTGGTTTTCTTCCTTTCCAGACTCAAATCATTTGAACAAA
CCACTAATCTACGGACATGAAAATTCGATCTCCAGACACACCATACACAAGACACTAATGGTATG
ATTTGGGAACCTACCTAATCGAGCGGGGTACCCAGCTTGGGCGTGTCAAGTAGCCGTAAAACGCA
CGCAAATGGGCCTTTAAGACTATATTCCACGGGCTCTCGATGCATGCCTGAAGCAAGGACCTTTA
GGTGCTCGACCATAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGTAAGCAGGCTCGACTGTC
AAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 1054352 -- 1054851
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTGATA
TGGTGAGGGTGCGTTAGCACACTCGACTGCCTTTAGTTACTTATTTGAGAGGGGGGCCGCCATCG
AATGCTTCCTCGTGTTCTGTATGGCGGTGCCCTTACATTATATATGAGCATGTGGTTTCACAAGC
AGCTTTTCGATCAAATTCATTGGCTGCCGTAATGACATATATAATGAGAGTGATTTCCTAGCTAG
AGAGAAGAAAGACCATTCATTGTTATGGTGGTAGTTATATATGAGCATGTGGTAGTGAAAGAGAA
AGCTTCGTAGCGTAGCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACCCCCT
AGCTTGAGAGCTCGGAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTC
AAAGTTCTTAGAGTTCAGGCGCTTTGCCGAAACTTGACTTGATTC
Found at i:1054394 original size:26 final size:26
Alignment explanation
Indices: 1054358--1054407 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1054348 GGGGCGGAGC
1054358 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
1054384 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
1054408 TGCGTGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 1053858 -- 1054357
CATCCTTCGGATTGTCCTAACCCCTTTGGTTTTCTTCCTTTCCAGACTCAAATCATTTGAACAAA
CCACTAATCTACGGACATGAAAATTCGATCTCCAGACACACCATACACAAGACACTAATGGTATG
ATTTGGGAACCTACCTAATCGAGCGGGGTACCCAGCTTGGGCGTGTCAAGTAGCCGTAAAACGCA
CGCAAATGGGCCTTTAAGACTATATTCCACGGGCTCTCGATGCATGCCTGAAGCAAGGACCTTTA
GGTGCTCGACCATAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGTAAGCAGGCTCGACTGTC
AAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 1054408 -- 1054907
TGCGTGATATGGTGAGGGTGCGTTAGCACACTCGACTGCCTTTAGTTACTTATTTGAGAGGGGGG
CCGCCATCGAATGCTTCCTCGTGTTCTGTATGGCGGTGCCCTTACATTATATATGAGCATGTGGT
TTCACAAGCAGCTTTTCGATCAAATTCATTGGCTGCCGTAATGACATATATAATGAGAGTGATTT
CCTAGCTAGAGAGAAGAAAGACCATTCATTGTTATGGTGGTAGTTATATATGAGCATGTGGTAGT
GAAAGAGAAAGCTTCGTAGCGTAGCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGC
CGACCCCCTAGCTTGAGAGCTCGGAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGC
GCTTCTCTCAAAGTTCTTAGAGTTCAGGCGCTTTGCCGAAACTTGACTTGATTCGATCTCTCAAA
ATAGCATAATGACATATATAATATATGCATGATTGGATTCGAGAG
Found at i:1054419 original size:18 final size:18
Alignment explanation
Indices: 1054396--1054430 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
1054386 CTCACTATTC
1054396 ATATGGTGAGGGTGCGTG
1 ATATGGTGAGGGTGCGTG
1054414 ATATGGTGAGGGTGCGT
1 ATATGGTGAGGGTGCGT
1054431 TAGCACACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.06, G:0.49, T:0.29
Consensus pattern (18 bp):
ATATGGTGAGGGTGCGTG
Left flanking sequence: Indices 1053896 -- 1054395
TTTCCAGACTCAAATCATTTGAACAAACCACTAATCTACGGACATGAAAATTCGATCTCCAGACA
CACCATACACAAGACACTAATGGTATGATTTGGGAACCTACCTAATCGAGCGGGGTACCCAGCTT
GGGCGTGTCAAGTAGCCGTAAAACGCACGCAAATGGGCCTTTAAGACTATATTCCACGGGCTCTC
GATGCATGCCTGAAGCAAGGACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGACTGAT
AAGGATGCGTAAGCAGGCTCGACTGTCAAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTG
AGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGG
ACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGG
GCGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTC
Right flanking sequence: Indices 1054431 -- 1054930
TAGCACACTCGACTGCCTTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGAATGCTTCCTCGTG
TTCTGTATGGCGGTGCCCTTACATTATATATGAGCATGTGGTTTCACAAGCAGCTTTTCGATCAA
ATTCATTGGCTGCCGTAATGACATATATAATGAGAGTGATTTCCTAGCTAGAGAGAAGAAAGACC
ATTCATTGTTATGGTGGTAGTTATATATGAGCATGTGGTAGTGAAAGAGAAAGCTTCGTAGCGTA
GCCGAAGCACATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACCCCCTAGCTTGAGAGCTCG
GAGGGAATTAGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGTTCTTAGAGT
TCAGGCGCTTTGCCGAAACTTGACTTGATTCGATCTCTCAAAATAGCATAATGACATATATAATA
TATGCATGATTGGATTCGAGAGCGTAATTACATATCTCATTCATT
Found at i:1055045 original size:91 final size:91
Alignment explanation
Indices: 1054940--1055120 Score: 362
Period size: 91 Copynumber: 2.0 Consensus size: 91
1054930 TCATGCATAA
1054940 TGACATATATAATGAATGATTGGATTCGATACCATAATGACATATATAATCTATCTCATTCATGA
1 TGACATATATAATGAATGATTGGATTCGATACCATAATGACATATATAATCTATCTCATTCATGA
1055005 CTGGAATCACTGGTCGAAATGAACCG
66 CTGGAATCACTGGTCGAAATGAACCG
1055031 TGACATATATAATGAATGATTGGATTCGATACCATAATGACATATATAATCTATCTCATTCATGA
1 TGACATATATAATGAATGATTGGATTCGATACCATAATGACATATATAATCTATCTCATTCATGA
1055096 CTGGAATCACTGGTCGAAATGAACC
66 CTGGAATCACTGGTCGAAATGAACC
1055121 AAATATTCAT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (91 bp):
TGACATATATAATGAATGATTGGATTCGATACCATAATGACATATATAATCTATCTCATTCATGA
CTGGAATCACTGGTCGAAATGAACCG
Left flanking sequence: Indices 1054440 -- 1054939
CGACTGCCTTTAGTTACTTATTTGAGAGGGGGGCCGCCATCGAATGCTTCCTCGTGTTCTGTATG
GCGGTGCCCTTACATTATATATGAGCATGTGGTTTCACAAGCAGCTTTTCGATCAAATTCATTGG
CTGCCGTAATGACATATATAATGAGAGTGATTTCCTAGCTAGAGAGAAGAAAGACCATTCATTGT
TATGGTGGTAGTTATATATGAGCATGTGGTAGTGAAAGAGAAAGCTTCGTAGCGTAGCCGAAGCA
CATGTCTGTCTCTATATCTGTTTGAGATAGGGCCGACCCCCTAGCTTGAGAGCTCGGAGGGAATT
AGCTCTAACGGAGTGTTGTCTCGCCGAGGGAGCGCTTCTCTCAAAGTTCTTAGAGTTCAGGCGCT
TTGCCGAAACTTGACTTGATTCGATCTCTCAAAATAGCATAATGACATATATAATATATGCATGA
TTGGATTCGAGAGCGTAATTACATATCTCATTCATTCATGCATAA
Right flanking sequence: Indices 1055121 -- 1055620
AAATATTCATCTCGATATAGGCGCCGGCCCTACCTAAATGAAGAAGAGATCAAACCCGGGGGGCA
ATAGGCCCCAGGAAGGGGCTTTCATTTTCAGAGTCATTTTCTCCGCAAGATCCCGAATTGAGATC
TCTCCCGAATTCCCTACCTAATTGATTGATTGGATCAAAATGAAAGGATGCGTAAGCAGGCTTTT
AGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATCAATTTCTTGCTTGCTCGACCAAATAA
AAGGGCGAGGGCCCTTGATGCTTATTGGGTGGGGGGCGGGGGTCGAGCGTTCGTTACCTCACCCT
ATATTCTTTAGGGGTCACTCACTCATTCATATGCCCCCCACCCAATAAGCAAACCCTAACCGGCA
GGGGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAAC
CCTAACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGCTCGAC
Found at i:1055631 original size:23 final size:24
Alignment explanation
Indices: 1055580--1055650 Score: 126
Period size: 24 Copynumber: 3.0 Consensus size: 24
1055570 GTAAACCCTA
1055580 ACCTTTAGGTGCTCGACCATAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
1055604 ACCTTTAGGTGCTCGACCAT-AGG
1 ACCTTTAGGTGCTCGACCATAAGG
*
1055627 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCATAAGG
1055651 GAGAGGGAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.49
24 23 0.51
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (24 bp):
ACCTTTAGGTGCTCGACCATAAGG
Left flanking sequence: Indices 1055080 -- 1055579
TCTATCTCATTCATGACTGGAATCACTGGTCGAAATGAACCAAATATTCATCTCGATATAGGCGC
CGGCCCTACCTAAATGAAGAAGAGATCAAACCCGGGGGGCAATAGGCCCCAGGAAGGGGCTTTCA
TTTTCAGAGTCATTTTCTCCGCAAGATCCCGAATTGAGATCTCTCCCGAATTCCCTACCTAATTG
ATTGATTGGATCAAAATGAAAGGATGCGTAAGCAGGCTTTTAGTTACTTATTTGAGAGGGGCCAC
CCAATAAGTCAAATCAATTTCTTGCTTGCTCGACCAAATAAAAGGGCGAGGGCCCTTGATGCTTA
TTGGGTGGGGGGCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGTCACTCACTC
ATTCATATGCCCCCCACCCAATAAGCAAACCCTAACCGGCAGGGGCTCGACTGTTAAGGATGCGC
AAGCATGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 1055651 -- 1056150
GAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAACCCCCCAAACCAATAAGTAAACCCTAAC
CTTTAGGTGCTCGACTGATAAGGATGCGTAAGCAGGCTCGACTGTGAAACCCCCCAACCCAATAA
GTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGATGCGTAAGCAGGCTCGACTGATAAGGACCC
TCACCATATGAATAGTGAGTGACCCCTCTCCTTGACATCGAGCCCCTACCGGCCTCATCCATCGG
AAGGTGAAGCCCCTACCGGTCCTGCCTCCCTTATCAGTAGAGCCCCCTAAAGGTTCCTGACAGTC
GAGCCCCTACCGTCCTCCCATAATGAATTAGTGATGGCTCGCCCCTCTCCTTGACAGTCAGCCCC
CACCGGTCCCTCCAACCATATGAATGGGAGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTTAG
TAGCTCGGGATGAACACTGCAAGCTTTCGGTTGGGCATAAAATAA
Found at i:1055814 original size:76 final size:77
Alignment explanation
Indices: 1055660--1055835 Score: 297
Period size: 76 Copynumber: 2.3 Consensus size: 77
1055650 GGAGAGGGAG
1055660 AGGATGCGTAAGCAGGCTCGAC--TGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGG
1 AGGATGCGTAAGCAGGCTCGACTGTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGG
1055723 TGCTCGACTGATA
66 TGCTCGACT-ATA
*
1055736 AGGATGCGTAAGCAGGCTCGACTGTGA-AACCCCCCAACCCAATAAGTAAACCCTAACCTTTAGG
1 AGGATGCGTAAGCAGGCTCGACTGTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGG
1055800 TGCTCGACCT-TA
66 TGCTCGA-CTATA
1055812 AGGATGCGTAAGCAGGCTCGACTG
1 AGGATGCGTAAGCAGGCTCGACTG
1055836 ATAAGGACCC
Statistics
Matches: 96, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
76 48 0.50
77 43 0.45
78 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (77 bp):
AGGATGCGTAAGCAGGCTCGACTGTGATAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGG
TGCTCGACTATA
Left flanking sequence: Indices 1055160 -- 1055659
GAAGAAGAGATCAAACCCGGGGGGCAATAGGCCCCAGGAAGGGGCTTTCATTTTCAGAGTCATTT
TCTCCGCAAGATCCCGAATTGAGATCTCTCCCGAATTCCCTACCTAATTGATTGATTGGATCAAA
ATGAAAGGATGCGTAAGCAGGCTTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATC
AATTTCTTGCTTGCTCGACCAAATAAAAGGGCGAGGGCCCTTGATGCTTATTGGGTGGGGGGCGG
GGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGTCACTCACTCATTCATATGCCCCCC
ACCCAATAAGCAAACCCTAACCGGCAGGGGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTG
TTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTG
CTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAG
Right flanking sequence: Indices 1055836 -- 1056335
ATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTCTCCTTGACATCGAGCCCCTACCGGCCT
CATCCATCGGAAGGTGAAGCCCCTACCGGTCCTGCCTCCCTTATCAGTAGAGCCCCCTAAAGGTT
CCTGACAGTCGAGCCCCTACCGTCCTCCCATAATGAATTAGTGATGGCTCGCCCCTCTCCTTGAC
AGTCAGCCCCCACCGGTCCCTCCAACCATATGAATGGGAGAGTGGCTCCGCCCCTAAAGAATATA
GGGCCCTTAGTAGCTCGGGATGAACACTGCAAGCTTTCGGTTGGGCATAAAATAAGCCTCCATGG
TTGGAGAGTCGTACTGGGCACCTATACTTCTTCTGAAATTCCCACTTCTTGGGTCGCTCCGACCA
AGAAAAAGTAAAGTCGACTGCTGAAAGCGTAAATGTACCATATATAATATAATGCATTTCTGGTA
GCGTAAATGACAATAATAATATGCATTTTTCTGGTTGCTTGGCGA
Found at i:1056819 original size:92 final size:88
Alignment explanation
Indices: 1056616--1056834 Score: 279
Period size: 92 Copynumber: 2.4 Consensus size: 88
1056606 TTTTTTAGGT
1056616 GCTCGACCATAAGGTCCGGTA-GGGCTCGA-CATAAGGGATTTCTCCGCTCAGAAACATAAGGGC
1 GCTCGACCATAAGGTCCGGTAGGGGCTCGACCATAAGGGATTTCTCCGCTCAGAAACATAAGGGC
1056679 CGCCATCGCGCCATCGATTTCTC
66 CGCCATCGCGCCATCGATTTCTC
* **
1056702 GCTTCGACCATAAGGTCCGGTAGGGGC-CGGACCAATAAGGGATTTCTTCGCCTC-GACCCAT-A
1 GC-TCGACCATAAGGTCCGGTAGGGGCTC-GACC-ATAAGGGATTTCTCCG-CTCAGAAACATAA
1056764 GGGCCGGCCATCGACGCCATCGATTTTTCTC
62 GGGCC-GCCATCG-CGCCATCGA--TTTCTC
1056795 GC-CGAACCATAAGGTCCGGTAGGGGCTCCGACCATAAGGG
1 GCTCG-ACCATAAGGTCCGGTAGGGGCT-CGACCATAAGGG
1056835 CCGCCATCGA
Statistics
Matches: 117, Mismatches: 3, Indels: 20
0.84 0.02 0.14
Matches are distributed among these distances:
86 2 0.02
87 20 0.17
88 6 0.05
89 7 0.06
90 27 0.23
91 14 0.12
92 28 0.24
93 12 0.10
94 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (88 bp):
GCTCGACCATAAGGTCCGGTAGGGGCTCGACCATAAGGGATTTCTCCGCTCAGAAACATAAGGGC
CGCCATCGCGCCATCGATTTCTC
Left flanking sequence: Indices 1056116 -- 1056615
TGAACACTGCAAGCTTTCGGTTGGGCATAAAATAAGCCTCCATGGTTGGAGAGTCGTACTGGGCA
CCTATACTTCTTCTGAAATTCCCACTTCTTGGGTCGCTCCGACCAAGAAAAAGTAAAGTCGACTG
CTGAAAGCGTAAATGTACCATATATAATATAATGCATTTCTGGTAGCGTAAATGACAATAATAAT
ATGCATTTTTCTGGTTGCTTGGCGAAATGGACATATATCGAGTTCCATCATGCATAATGACATAT
AAAGAGACAATTGATTTCGGTCACTAGAAAGAGAGACGAAATCAAAGCACACTCGACGCCTTGGT
TACTTAATATGAGAGGAGGGGAGCGCAAGCAGCCTCGACCCTGTTAACCCCACCAATAACCAATA
AGTAAACCCAACCTTTAAGGTGCCTCGACCATAACCCCCACCCAATAAGTAAACCCTAAATGCGC
AAGCAGGCTCGACCGTTAAGGAGAAGGGAGAGGACTTTTTTAGGT
Right flanking sequence: Indices 1056835 -- 1057334
CCGCCATCGATTTCTCGCTCGACCATAAGGGCCGCCATCGCCGCCATCGCCGCCATCGAGAGGAG
AGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAAATGACATATATAATATATGCTT
GGATTCGAGAGCGAGAGATAGAGAAAGTAGTTTGAAAAAGGAGGGGAGCAGGATGATTTCACAAG
CTCATGCTTCCGGGGCAGGGGAAGCAGGCAACACCCTGCCCGCCGCGGGACGGACCTTCGCGGTC
ACTCCGATGCGAGTGCGATCAGGAGAAAAAGGTCGGGCGGGTTCTACGCGCCCAGTGGGTGTGGG
AATCACCTTCGGCTCCATTAGCAAGGAATATACATTAGGGGGCAGTCGGCGGCCCCATATCCCAC
TCACATTAGCACTCCATCCCAGCGCCATCACGGTGGTGAAATGAAAGGGCACCTATGAACGGTAT
AACATCAGATCGGGAACCTCAAAACGCCGAGGATACCATATCCCG
Found at i:1056879 original size:9 final size:9
Alignment explanation
Indices: 1056865--1056892 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1056855 GACCATAAGG
1056865 GCCGCCATC
1 GCCGCCATC
1056874 GCCGCCATC
1 GCCGCCATC
1056883 GCCGCCATC
1 GCCGCCATC
1056892 G
1 G
1056893 AGAGGAGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.54, G:0.25, T:0.11
Consensus pattern (9 bp):
GCCGCCATC
Left flanking sequence: Indices 1056365 -- 1056864
TAATGACATATAAAGAGACAATTGATTTCGGTCACTAGAAAGAGAGACGAAATCAAAGCACACTC
GACGCCTTGGTTACTTAATATGAGAGGAGGGGAGCGCAAGCAGCCTCGACCCTGTTAACCCCACC
AATAACCAATAAGTAAACCCAACCTTTAAGGTGCCTCGACCATAACCCCCACCCAATAAGTAAAC
CCTAAATGCGCAAGCAGGCTCGACCGTTAAGGAGAAGGGAGAGGACTTTTTTAGGTGCTCGACCA
TAAGGTCCGGTAGGGCTCGACATAAGGGATTTCTCCGCTCAGAAACATAAGGGCCGCCATCGCGC
CATCGATTTCTCGCTTCGACCATAAGGTCCGGTAGGGGCCGGACCAATAAGGGATTTCTTCGCCT
CGACCCATAGGGCCGGCCATCGACGCCATCGATTTTTCTCGCCGAACCATAAGGTCCGGTAGGGG
CTCCGACCATAAGGGCCGCCATCGATTTCTCGCTCGACCATAAGG
Right flanking sequence: Indices 1056893 -- 1057392
AGAGGAGAGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAAATGACATATATAATA
TATGCTTGGATTCGAGAGCGAGAGATAGAGAAAGTAGTTTGAAAAAGGAGGGGAGCAGGATGATT
TCACAAGCTCATGCTTCCGGGGCAGGGGAAGCAGGCAACACCCTGCCCGCCGCGGGACGGACCTT
CGCGGTCACTCCGATGCGAGTGCGATCAGGAGAAAAAGGTCGGGCGGGTTCTACGCGCCCAGTGG
GTGTGGGAATCACCTTCGGCTCCATTAGCAAGGAATATACATTAGGGGGCAGTCGGCGGCCCCAT
ATCCCACTCACATTAGCACTCCATCCCAGCGCCATCACGGTGGTGAAATGAAAGGGCACCTATGA
ACGGTATAACATCAGATCGGGAACCTCAAAACGCCGAGGATACCATATCCCGGTAAGTGATTCAT
TGAAAACCCCATGCCATATTCCAATCCAGCTACATGGGCTTCAAC
Found at i:1058194 original size:116 final size:116
Alignment explanation
Indices: 1057990--1058221 Score: 464
Period size: 116 Copynumber: 2.0 Consensus size: 116
1057980 GGTACTCATA
1057990 GCTGAACCGATCAAGCTGGGGTGAAGCGATGGGCGTGACCGACCGACCCTATTTGGTCCGTCATG
1 GCTGAACCGATCAAGCTGGGGTGAAGCGATGGGCGTGACCGACCGACCCTATTTGGTCCGTCATG
1058055 CCCCTCCCATATCTCGGAAACAATTCCGACATATGAAACTTGAAAAGACAC
66 CCCCTCCCATATCTCGGAAACAATTCCGACATATGAAACTTGAAAAGACAC
1058106 GCTGAACCGATCAAGCTGGGGTGAAGCGATGGGCGTGACCGACCGACCCTATTTGGTCCGTCATG
1 GCTGAACCGATCAAGCTGGGGTGAAGCGATGGGCGTGACCGACCGACCCTATTTGGTCCGTCATG
1058171 CCCCTCCCATATCTCGGAAACAATTCCGACATATGAAACTTGAAAAGACAC
66 CCCCTCCCATATCTCGGAAACAATTCCGACATATGAAACTTGAAAAGACAC
1058222 AAGGTGGAGG
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (116 bp):
GCTGAACCGATCAAGCTGGGGTGAAGCGATGGGCGTGACCGACCGACCCTATTTGGTCCGTCATG
CCCCTCCCATATCTCGGAAACAATTCCGACATATGAAACTTGAAAAGACAC
Left flanking sequence: Indices 1057490 -- 1057989
CAAATATAATCAAAACGGAGGCACTTGACTCGGATATAGTTGGGTGATTCATTGAGTCACTTCAT
GGAGGGTGCATTCTCATCGAAGTTCTTGGATTTCAGTGGATTTCATTGAAGTTATTGGTCACTTA
CCTCTTAGGGGTATAGGGTGAGGAATTTCTTTGATTTTTCAATTTAGATCAAGAAAAGGAATTCA
ATTGCTTGACCATCGGGAGAGGATGCGGAAACGAACCTTGAGGGCAAACAATTGAGCCTTGAGGG
TACGCTTTCGCTCATCGGATGAGCTACAGCGCTTCGGGACAGGATTTCGAGAAGAATATGATTGA
CTGAATTTGCAAGTAATGGATCGAAATCCACTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCT
TAACAGTCGTGCACCCTGACGGGTCCTTGCCCCTCCGTCTGATGGATGATACAGATACAGATCTG
GCTCGATGGATGGATATCCCTCGATAGCCGGGACTGGTACTCATA
Right flanking sequence: Indices 1058222 -- 1058721
AAGGTGGAGGGTGGTGGGGGGACGCTGGGATAGGTTAGGGTCCCCGCCTATGTGTCTTTTACACA
CCGCTTGTTACGATATGTAAGACAATGTAGGAGTTTCGCTACTGTGGAGTCATCTTCTTTCTCTG
AATTATTTGGTGAGATCAGCCTTTACCTGGGCACGTCGCACGTAAAGGCTTGATCAGAGAGGCGG
TCGCTTCCTCTCTCTTAAGTCCTATACTTAAGTATTAAGTCACCTATAAAGACCCCCACAGGGTC
TGCCGAGTAAGGCATCGTCTCAATGGAAAGACACCCCCCCTCATCGGGGTGGGAAATCCTGGTTC
AAATCCAGGTGCTTTAGGTGCCTTTTTAGCTTGGCGGAGGTTTTTCAATATTCCCCTACTATTAT
AGCATTTTCAGGAGGCGGAGGTTTTGATCAGTAATGAAGGTTAGGAAGTGGGAATGAATGCATAA
TGACATATATAATGAGATTGATTTCGGTCACTAGAGAGAGAGACG
Found at i:1060935 original size:18 final size:18
Alignment explanation
Indices: 1060912--1060946 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1060902 ATCATCATCA
1060912 AAACAAGGCTTTATCTTG
1 AAACAAGGCTTTATCTTG
*
1060930 AAACAAGGCTTTCTCTT
1 AAACAAGGCTTTATCTT
1060947 TCTTGTACGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (18 bp):
AAACAAGGCTTTATCTTG
Left flanking sequence: Indices 1060412 -- 1060911
ACCATAGCTGAAGCGACTAAATTCTTTTTACTCCCGTTGTCCAGGATCAGCATAACCAAGCGATC
CTTCCAACCAGCCTCATGGGGAAGTATCTATCCATCCAACCAACCTCAAGGGGAAGGGTATAAGC
CTATGTCCTGCCTATCTGTTCGTGGGGTTGGGGCCGCACCACGTTCCTTATTCATCAACCTGCGT
AAGCGCTCCATGCTAATGGGGGGAGGTATAAAGCAAGCAAGCTCAAGGGTCGAAGCTTCTATTCT
GTTGAAGCGTAGTAATCGCCAGGGGAACAATTGAGTAGCGGTAACCAAGCAAGCTGTTGTAGCTA
TCCTTCCACCCTCATCAAGCAGTGTTGATTCCTCAACAAGCGAGCGTTATCGATCTTTCCTTCGA
CCATGAGCGTGAGCGATTAACTACCATTCCGGCAAGCGATAGCGATCCTTCCCTCCTTCCTAGCG
GTAGCGTCCATCGTGCTTCCTAGCGGTAGCGCTCAATCATCATCA
Right flanking sequence: Indices 1060947 -- 1061446
TCTTGTACGCTCTGCGCCACGACTGCTCTGCTCAGCTCAGTGTTCGGCCCCCGGAGGGGACTCAT
GCGTATGTGAACGCCCCAGCCCGCCCGCCACGGCCTCATGCTGGATGTGTCTAAATGACTTCCCA
CGTATATTCTTCAAGTCCACTATTTGATCAACTGTATCCTACTCAATGTAGTCAAGGTTTCTTTT
TGCAGGGAGAAAGAAACCCCACCTTTCAATTTATCAACCAATATATACCTACCCCACTTAGGAAG
GGCGAATGCCCCAAACTTACTGCATTCCACCCGGCTATAGAGCTTTTTAAAAAGCTTATAGACAG
CCAGCAAGGAATAAGCACGTAAGTAAAGCGATCCCGCCCGTCGTTTCCTTTTTTCCGCCCAGGCG
CCTGTACTATAGACCGAATTAAGCACCACAAGAACTACCAGCACCACCAGCACCACTCTGTAGAG
TATATCACACTTGCTCAAAGGACGGACGGTGGGTTAATGAGGAGC
Found at i:1061700 original size:20 final size:21
Alignment explanation
Indices: 1061667--1061708 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
1061657 TGGCTTCTAA
*
1061667 GCTTTAGCCCCCCTATGAATT
1 GCTTTAGCCCCCCTAGGAATT
1061688 GCTTTAG-CCCCCTAGGAATT
1 GCTTTAGCCCCCCTAGGAATT
1061708 G
1 G
1061709 AATGGTGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31
Consensus pattern (21 bp):
GCTTTAGCCCCCCTAGGAATT
Left flanking sequence: Indices 1061167 -- 1061666
TCAATTTATCAACCAATATATACCTACCCCACTTAGGAAGGGCGAATGCCCCAAACTTACTGCAT
TCCACCCGGCTATAGAGCTTTTTAAAAAGCTTATAGACAGCCAGCAAGGAATAAGCACGTAAGTA
AAGCGATCCCGCCCGTCGTTTCCTTTTTTCCGCCCAGGCGCCTGTACTATAGACCGAATTAAGCA
CCACAAGAACTACCAGCACCACCAGCACCACTCTGTAGAGTATATCACACTTGCTCAAAGGACGG
ACGGTGGGTTAATGAGGAGCCTTCCTTCCTGAAGCTGGATTCATGACTTGCTTGAAGAGAACCAT
CCTCCTTCGCGTCAGCATCATTCATCGAGTTAGCATTAAGGTAAGGGCCATCGTTCAGTGGTAAG
AAGGAAGATCACCACGTATCGCAACATAAAGCAGGTCAGGTAGAGTGCTGAAGTTTAAGTTCATG
GATTCAGGAAGCACTTCTCCTTTTTAATTACAATCTGGCTTCTAA
Right flanking sequence: Indices 1061709 -- 1062208
AATGGTGAGAATAGCGTTAGTCTCCTATGTGGTTCTAATAGCTTTAGCCCCTATGTATGGTGATA
ATTGGGACTCATTTCATCCTTTAGTTAGTTATAGTACCCCGATCTACCTTCTATTTTAGAGAAAG
CAATTCTATATGAATATAATGTGCTCCAAGGGCAAACTCCAAGGGGAAATGAGAAGGTTGATAAC
AATTGTCTAAGCTTCCTCTATATGTTCAATCTTTACTTTAGTTGCTGGCGAGGTAAAAACTCGGT
TTAACCTACTTACGGATTCTATCCAGATAGAGACTACTTGGAAAACCAGATGCATGGATATATGC
TGCTTCGACAAACCTTGATTTATTGATTGACTTGCCTCGCTCGACAGAGTGAAAGGATTGTGATC
ACCGATTGAGTCTTAAGGAAGGCAGGGCCCTAAAGCAGATTCTTGGGAAGCTTAGGTGAGGCGGT
TGACTCCGGTGAGACAAAGGTGAAGCAAGATCCTGGACAGCCTCA
Found at i:1062720 original size:27 final size:27
Alignment explanation
Indices: 1062703--1062761 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
1062693 AGGACCCTTT
* *
1062703 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
1062730 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
1062757 AGGGG
1 AGGGG
1062762 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 1062203 -- 1062702
GCCTCAGGTAAAGTAAACTCCAAACAAAGATGGGACTTCTTTTTCTTTATTGAGAAGCCAGAGGA
TAAGGAGGTTTCCGTCTAGGGTCAAGTGGAAAGGTTGATAGAAGGCGCTTAAAGGACAAATGATA
AGGTTTTTTATATTCGCCTAATATAATCTATCTGTTGGCTTTCAATTGTAAAAGCATTACCGGTA
ACTGGTAGGGCTCTGTCTATTGTGTATTCCCGGCTATTGGTTGGTAGGACCGCTCTTCTTCCTCT
TGGTGAGTCCTGGCTCTAATCCCAATGGGTATATAGTCAGCATAGGTAGGATAGGTGGTGGGTCG
GAAGGCGGGTCCAAAATAGGTAGGGTAGTTGGCTGTGTTGGTTCTCAGGCAAGGCAGGGCCCTAT
ATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 1062762 -- 1063261
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTAAGC
ACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCTTCATAGGGA
CGGAGTCACTCACTATTCATATGGTGAGGACCGGAATGACATATATAATATATGAATATTAAGGC
TGCCGGCATTCGAAAGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCATATGGTGAGGG
GTCGCTCACTCATTCATATGGGTGAGGGGCATTTGATGCTCAAAATAGATCATACTCAAAACAAA
TAGTTTGATCCTGGCTTAGAACGATAGCGGGGTAGAGTAATTGGTCGACTCGTCAGGCCCATGAC
CTGAAGACTGCAGGTTCGAACCCTGCCCCCGCCTCCCAAAACGAGATCTAACACAGGGTCGATCA
GTAAGGTCCTTTCTTTCCCAGTCCAGGCTTTCTTGGAGATGAGGA
Found at i:1062804 original size:26 final size:26
Alignment explanation
Indices: 1062768--1062817 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1062758 GGGGCGGAGC
1062768 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
1062794 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
1062818 TGCGTAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 1062268 -- 1062767
TAAGGAGGTTTCCGTCTAGGGTCAAGTGGAAAGGTTGATAGAAGGCGCTTAAAGGACAAATGATA
AGGTTTTTTATATTCGCCTAATATAATCTATCTGTTGGCTTTCAATTGTAAAAGCATTACCGGTA
ACTGGTAGGGCTCTGTCTATTGTGTATTCCCGGCTATTGGTTGGTAGGACCGCTCTTCTTCCTCT
TGGTGAGTCCTGGCTCTAATCCCAATGGGTATATAGTCAGCATAGGTAGGATAGGTGGTGGGTCG
GAAGGCGGGTCCAAAATAGGTAGGGTAGTTGGCTGTGTTGGTTCTCAGGCAAGGCAGGGCCCTAT
ATTCTTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 1062818 -- 1063317
TGCGTAAGCACGCTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGCCCTTACTTCT
TCATAGGGACGGAGTCACTCACTATTCATATGGTGAGGACCGGAATGACATATATAATATATGAA
TATTAAGGCTGCCGGCATTCGAAAGGCCCTATATTCTTTAGGGGCGGAGCCACTCACTATTCATA
TGGTGAGGGGTCGCTCACTCATTCATATGGGTGAGGGGCATTTGATGCTCAAAATAGATCATACT
CAAAACAAATAGTTTGATCCTGGCTTAGAACGATAGCGGGGTAGAGTAATTGGTCGACTCGTCAG
GCCCATGACCTGAAGACTGCAGGTTCGAACCCTGCCCCCGCCTCCCAAAACGAGATCTAACACAG
GGTCGATCAGTAAGGTCCTTTCTTTCCCAGTCCAGGCTTTCTTGGAGATGAGGAAGTGAAGACTT
AAGGCGTATAACGTATTGACTTTGAGGTACGTAGTCGCTCGACCA
Found at i:1063453 original size:24 final size:24
Alignment explanation
Indices: 1063425--1063507 Score: 130
Period size: 24 Copynumber: 3.4 Consensus size: 24
1063415 GTAAACCCTA
*
1063425 ACCTTTAGGTGCTCGACCATAAGG
1 ACCTTTAGGTGCTCGACCTTAAGG
1063449 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCTTAAGG
*
1063473 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGAC-CTTAAGG
1063498 ACCCTTTAGG
1 A-CCTTTAGG
1063508 GTGCGTAAGC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
24 40 0.73
25 7 0.13
26 8 0.15
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (24 bp):
ACCTTTAGGTGCTCGACCTTAAGG
Left flanking sequence: Indices 1062925 -- 1063424
GAATGACATATATAATATATGAATATTAAGGCTGCCGGCATTCGAAAGGCCCTATATTCTTTAGG
GGCGGAGCCACTCACTATTCATATGGTGAGGGGTCGCTCACTCATTCATATGGGTGAGGGGCATT
TGATGCTCAAAATAGATCATACTCAAAACAAATAGTTTGATCCTGGCTTAGAACGATAGCGGGGT
AGAGTAATTGGTCGACTCGTCAGGCCCATGACCTGAAGACTGCAGGTTCGAACCCTGCCCCCGCC
TCCCAAAACGAGATCTAACACAGGGTCGATCAGTAAGGTCCTTTCTTTCCCAGTCCAGGCTTTCT
TGGAGATGAGGAAGTGAAGACTTAAGGCGTATAACGTATTGACTTTGAGGTACGTAGTCGCTCGA
CCAAAGGGTGCGTAAGCACACTCGACTGTTAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGC
AAGCATGCTCGACTGTTAACCCCCCAACACAATAAGTAAACCCTA
Right flanking sequence: Indices 1063508 -- 1064007
GTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGG
GGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGAGGATGCGAAGCATGGC
TCGACCAACGATGCGCAAGCAGGCTCGACTACTATTTACCCACCCACCCCAATCCCCGAGGGGAG
AGGGCCCTTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGACGGTTTAGGGGCT
CGACTGTCAAGACCCTTTAGGGTGCGTAAGCACGCTCCGACTAATAAGGACCCTTTAGGGGGTCG
ACTGATAAGGGATAGGAGAGGGGGCTCGACTTGATAAGGAGAGGAGAGGTCACTCACTATTCATT
ATGGTGAGGGGTGCGTTGCACACTCGACTTGCCCTGCCCCCGGAGGGACAAGCGCTTCGCACCTA
GTACTTATTGAGAGGGGGCCGCCATCGCCCTACTTTTTTCATAGG
Found at i:1063559 original size:27 final size:27
Alignment explanation
Indices: 1063542--1063599 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
1063532 AGGACCCTTT
* *
1063542 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
1063569 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
1063596 AGGG
1 AGGG
1063600 CCGCCATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.50, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 1063042 -- 1063541
GGTGAGGGGCATTTGATGCTCAAAATAGATCATACTCAAAACAAATAGTTTGATCCTGGCTTAGA
ACGATAGCGGGGTAGAGTAATTGGTCGACTCGTCAGGCCCATGACCTGAAGACTGCAGGTTCGAA
CCCTGCCCCCGCCTCCCAAAACGAGATCTAACACAGGGTCGATCAGTAAGGTCCTTTCTTTCCCA
GTCCAGGCTTTCTTGGAGATGAGGAAGTGAAGACTTAAGGCGTATAACGTATTGACTTTGAGGTA
CGTAGTCGCTCGACCAAAGGGTGCGTAAGCACACTCGACTGTTAAGGACCTTTAGGTGCTCGACT
GTTAAGGATGCGCAAGCATGCTCGACTGTTAACCCCCCAACACAATAAGTAAACCCTAACCTTTA
GGTGCTCGACCATAAGGACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACTGTTAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 1063600 -- 1064099
CCGCCATCGAGAGGAGAGGAGAGGATGCGAAGCATGGCTCGACCAACGATGCGCAAGCAGGCTCG
ACTACTATTTACCCACCCACCCCAATCCCCGAGGGGAGAGGGCCCTTACTTCTTAGGGGCGGAGC
CACTCACTATTCCGATGGTGAGGGACGGTTTAGGGGCTCGACTGTCAAGACCCTTTAGGGTGCGT
AAGCACGCTCCGACTAATAAGGACCCTTTAGGGGGTCGACTGATAAGGGATAGGAGAGGGGGCTC
GACTTGATAAGGAGAGGAGAGGTCACTCACTATTCATTATGGTGAGGGGTGCGTTGCACACTCGA
CTTGCCCTGCCCCCGGAGGGACAAGCGCTTCGCACCTAGTACTTATTGAGAGGGGGCCGCCATCG
CCCTACTTTTTTCATAGGGCCCTTATATTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAG
GGTGCGTAAGCCACACTCGATGCTTTGGTTTACTTTTATTTGAGA
Found at i:1063863 original size:28 final size:27
Alignment explanation
Indices: 1063824--1063881 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
1063814 AGGACCCTTT
*
1063824 AGGGGGTCGAC-TGATAAGGGATAGGAG
1 AGGGGGTCGACTTGATAA-GGAGAGGAG
1063851 AGGGGGCTCGACTTGATAAGGAGAGGAG
1 AGGGGG-TCGACTTGATAAGGAGAGGAG
1063879 AGG
1 AGG
1063882 TCACTCACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 6 0.21
28 16 0.57
29 6 0.21
ACGTcount: A:0.29, C:0.09, G:0.48, T:0.14
Consensus pattern (27 bp):
AGGGGGTCGACTTGATAAGGAGAGGAG
Left flanking sequence: Indices 1063324 -- 1063823
GCGTAAGCACACTCGACTGTTAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCT
CGACTGTTAACCCCCCAACACAATAAGTAAACCCTAACCTTTAGGTGCTCGACCATAAGGACCTT
TAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCA
CGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGA
TAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGAGGATGCGAAGCATGGCTCGACCAACGA
TGCGCAAGCAGGCTCGACTACTATTTACCCACCCACCCCAATCCCCGAGGGGAGAGGGCCCTTAC
TTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGACGGTTTAGGGGCTCGACTGTCAAG
ACCCTTTAGGGTGCGTAAGCACGCTCCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 1063882 -- 1064381
TCACTCACTATTCATTATGGTGAGGGGTGCGTTGCACACTCGACTTGCCCTGCCCCCGGAGGGAC
AAGCGCTTCGCACCTAGTACTTATTGAGAGGGGGCCGCCATCGCCCTACTTTTTTCATAGGGCCC
TTATATTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGTGCGTAAGCCACACTCGATG
CTTTGGTTTACTTTTATTTGAGAGGAGGGGAGAGGGGCGGAGCCCACTCACTATTCATTGGTTGA
GGACGGTAGGGGGCTCGACTGTCAGGACCTTAGGGTGCGTAGCACGCTCGACTAATAAGGAACCC
TTTAGGGGGTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGCAGGAGAGGGCGGA
GCCACTCCTATTCATATGGTGAGGGTCCACTCACTTATTCATATGGTGAGGGTGCGTAAGCACCA
CTCGACTGCTTTGGTTACTTATTTGAGAGGAGGGAGAGGGTGCGT
Found at i:1064241 original size:27 final size:28
Alignment explanation
Indices: 1064210--1064267 Score: 102
Period size: 27 Copynumber: 2.1 Consensus size: 28
1064200 GGAACCCTTT
1064210 AGGGGG-TCGACTGATAAGGAG-AGGAG
1 AGGGGGCTCGACTGATAAGGAGCAGGAG
1064236 AGGGGGCTCGACTGATAAGGAGCAGGAG
1 AGGGGGCTCGACTGATAAGGAGCAGGAG
1064264 AGGG
1 AGGG
1064268 CGGAGCCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 6 0.20
27 15 0.50
28 9 0.30
ACGTcount: A:0.29, C:0.10, G:0.50, T:0.10
Consensus pattern (28 bp):
AGGGGGCTCGACTGATAAGGAGCAGGAG
Left flanking sequence: Indices 1063710 -- 1064209
TTACTTCTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGGACGGTTTAGGGGCTCGACTGT
CAAGACCCTTTAGGGTGCGTAAGCACGCTCCGACTAATAAGGACCCTTTAGGGGGTCGACTGATA
AGGGATAGGAGAGGGGGCTCGACTTGATAAGGAGAGGAGAGGTCACTCACTATTCATTATGGTGA
GGGGTGCGTTGCACACTCGACTTGCCCTGCCCCCGGAGGGACAAGCGCTTCGCACCTAGTACTTA
TTGAGAGGGGGCCGCCATCGCCCTACTTTTTTCATAGGGCCCTTATATTCTTAGGGGCGGAGCCA
CTCACTATTCCGATGGTGAGGGTGCGTAAGCCACACTCGATGCTTTGGTTTACTTTTATTTGAGA
GGAGGGGAGAGGGGCGGAGCCCACTCACTATTCATTGGTTGAGGACGGTAGGGGGCTCGACTGTC
AGGACCTTAGGGTGCGTAGCACGCTCGACTAATAAGGAACCCTTT
Right flanking sequence: Indices 1064268 -- 1064767
CGGAGCCACTCCTATTCATATGGTGAGGGTCCACTCACTTATTCATATGGTGAGGGTGCGTAAGC
ACCACTCGACTGCTTTGGTTACTTATTTGAGAGGAGGGAGAGGGTGCGTTAGCACACTCACTATT
TCATTATGTTGACGGGGTCACTCACTCATTCCGAATGCCACACCCATAAGCATCAAGACGGCAGG
GGCTCGACCACCGCCTTTTAGTTACTATTGAGAGCCCAATAAGTCAATTTCAACTGAAGTTGCTC
GACCATCCGGGCCGCCATCACCGGCAGGGTGGTAAGCAACTTCGCTGCCTTGCCCCGGAAGGGAC
AAAGCGGGCTTCGCAACCTTAGTTACTTATTTGAAGAGGGGGGGGCCCCATTTCGCCCCTACTAC
TTTATAGGCCTTATTCTTTAGGGGCGGGAGCCACTCAACTATTCCGATGGTGAGGCGGTACGGGG
CTCGACTGTCAAGACCCTTTAGCGTGCGTTAAGCACGCTCGACTA
Found at i:1064315 original size:27 final size:25
Alignment explanation
Indices: 1064273--1064324 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 25
1064263 GAGGGCGGAG
1064273 CCACTCCTATTCATATGGTGAGGGT
1 CCACTCCTATTCATATGGTGAGGGT
1064298 CCACTCACTTATTCATATGGTGAGGGT
1 CCACTC-C-TATTCATATGGTGAGGGT
1064325 GCGTAAGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 6 0.24
26 1 0.04
27 18 0.72
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (25 bp):
CCACTCCTATTCATATGGTGAGGGT
Left flanking sequence: Indices 1063773 -- 1064272
GTCAAGACCCTTTAGGGTGCGTAAGCACGCTCCGACTAATAAGGACCCTTTAGGGGGTCGACTGA
TAAGGGATAGGAGAGGGGGCTCGACTTGATAAGGAGAGGAGAGGTCACTCACTATTCATTATGGT
GAGGGGTGCGTTGCACACTCGACTTGCCCTGCCCCCGGAGGGACAAGCGCTTCGCACCTAGTACT
TATTGAGAGGGGGCCGCCATCGCCCTACTTTTTTCATAGGGCCCTTATATTCTTAGGGGCGGAGC
CACTCACTATTCCGATGGTGAGGGTGCGTAAGCCACACTCGATGCTTTGGTTTACTTTTATTTGA
GAGGAGGGGAGAGGGGCGGAGCCCACTCACTATTCATTGGTTGAGGACGGTAGGGGGCTCGACTG
TCAGGACCTTAGGGTGCGTAGCACGCTCGACTAATAAGGAACCCTTTAGGGGGTCGACTGATAAG
GAGAGGAGAGGGGGCTCGACTGATAAGGAGCAGGAGAGGGCGGAG
Right flanking sequence: Indices 1064325 -- 1064824
GCGTAAGCACCACTCGACTGCTTTGGTTACTTATTTGAGAGGAGGGAGAGGGTGCGTTAGCACAC
TCACTATTTCATTATGTTGACGGGGTCACTCACTCATTCCGAATGCCACACCCATAAGCATCAAG
ACGGCAGGGGCTCGACCACCGCCTTTTAGTTACTATTGAGAGCCCAATAAGTCAATTTCAACTGA
AGTTGCTCGACCATCCGGGCCGCCATCACCGGCAGGGTGGTAAGCAACTTCGCTGCCTTGCCCCG
GAAGGGACAAAGCGGGCTTCGCAACCTTAGTTACTTATTTGAAGAGGGGGGGGCCCCATTTCGCC
CCTACTACTTTATAGGCCTTATTCTTTAGGGGCGGGAGCCACTCAACTATTCCGATGGTGAGGCG
GTACGGGGCTCGACTGTCAAGACCCTTTAGCGTGCGTTAAGCACGCTCGACTAATAAGGACCCTT
TAGGGGGCTCGGACTGATAAGGAGAGGAGAGGCTCGACTGTAAGG
Found at i:1064825 original size:23 final size:25
Alignment explanation
Indices: 1064785--1064835 Score: 79
Period size: 23 Copynumber: 2.1 Consensus size: 25
1064775 CCCTTTAGGG
1064785 GGCTCGGACTGATAAGGAGAGGAGA
1 GGCTCGGACTGATAAGGAGAGGAGA
*
1064810 GGCTC-GACTG-TAAGGATAGGAGA
1 GGCTCGGACTGATAAGGAGAGGAGA
1064833 GGC
1 GGC
1064836 GGAGCCACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 15 0.60
24 5 0.20
25 5 0.20
ACGTcount: A:0.29, C:0.14, G:0.43, T:0.14
Consensus pattern (25 bp):
GGCTCGGACTGATAAGGAGAGGAGA
Left flanking sequence: Indices 1064285 -- 1064784
ATATGGTGAGGGTCCACTCACTTATTCATATGGTGAGGGTGCGTAAGCACCACTCGACTGCTTTG
GTTACTTATTTGAGAGGAGGGAGAGGGTGCGTTAGCACACTCACTATTTCATTATGTTGACGGGG
TCACTCACTCATTCCGAATGCCACACCCATAAGCATCAAGACGGCAGGGGCTCGACCACCGCCTT
TTAGTTACTATTGAGAGCCCAATAAGTCAATTTCAACTGAAGTTGCTCGACCATCCGGGCCGCCA
TCACCGGCAGGGTGGTAAGCAACTTCGCTGCCTTGCCCCGGAAGGGACAAAGCGGGCTTCGCAAC
CTTAGTTACTTATTTGAAGAGGGGGGGGCCCCATTTCGCCCCTACTACTTTATAGGCCTTATTCT
TTAGGGGCGGGAGCCACTCAACTATTCCGATGGTGAGGCGGTACGGGGCTCGACTGTCAAGACCC
TTTAGCGTGCGTTAAGCACGCTCGACTAATAAGGACCCTTTAGGG
Right flanking sequence: Indices 1064836 -- 1065335
GGAGCCACTCACTATTCATATGGTGAGGGGTCACTCATATTCATATGTGAGGGTCACTCACTCAT
TCCGATGGTGAGGGATTGTGCGGTCTAAAAGAGTGATTCTTCGTGAGATGCATTCATTCCGAAAA
GGTGAGGAACGAGCCGGGACCCCATTCAATAGAGGGGATCGGATCTCACCAATGATCAGTGGGGC
ATTCGGGCTAAGCTAAGCAGGGTACCATAGTTTGTTTGGAACCACGACGCCTATCTATCAGTCAG
TCAGGCAGGTTGTGTAAGCCTGGCTCTGTTTTTCTCAACACTATGGTGGGTGGAGGAGGGTACCC
AAGGGTAAGATCGGGAGTGTGAGCAGTACGAGGCCGAGAGGCTCCCATTATTGTTTGGAGGCAGG
GGGCAGAGATGCCAAACCTACCCCTATCTATCGGCCGTAAGAAGCTGTTTCTTTGAAGATTATGT
TTTCGGGGTATCAAATAAATTTTTCATCCAAAGGGCCCCCCCGAA
Found at i:1064893 original size:23 final size:26
Alignment explanation
Indices: 1064841--1064914 Score: 100
Period size: 25 Copynumber: 2.9 Consensus size: 26
1064831 GAGGCGGAGC
1064841 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
1064867 CACTCA-TATTCATAT-GTGA-GGGT
1 CACTCACTATTCATATGGTGAGGGGT
**
1064890 CACTCACTCATTCCGATGGTGAGGG
1 CACTCACT-ATTCATATGGTGAGGG
1064915 ATTGTGCGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 10 0.24
24 5 0.12
25 15 0.36
26 10 0.24
27 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 1064341 -- 1064840
ACTGCTTTGGTTACTTATTTGAGAGGAGGGAGAGGGTGCGTTAGCACACTCACTATTTCATTATG
TTGACGGGGTCACTCACTCATTCCGAATGCCACACCCATAAGCATCAAGACGGCAGGGGCTCGAC
CACCGCCTTTTAGTTACTATTGAGAGCCCAATAAGTCAATTTCAACTGAAGTTGCTCGACCATCC
GGGCCGCCATCACCGGCAGGGTGGTAAGCAACTTCGCTGCCTTGCCCCGGAAGGGACAAAGCGGG
CTTCGCAACCTTAGTTACTTATTTGAAGAGGGGGGGGCCCCATTTCGCCCCTACTACTTTATAGG
CCTTATTCTTTAGGGGCGGGAGCCACTCAACTATTCCGATGGTGAGGCGGTACGGGGCTCGACTG
TCAAGACCCTTTAGCGTGCGTTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGGACTG
ATAAGGAGAGGAGAGGCTCGACTGTAAGGATAGGAGAGGCGGAGC
Right flanking sequence: Indices 1064915 -- 1065414
ATTGTGCGGTCTAAAAGAGTGATTCTTCGTGAGATGCATTCATTCCGAAAAGGTGAGGAACGAGC
CGGGACCCCATTCAATAGAGGGGATCGGATCTCACCAATGATCAGTGGGGCATTCGGGCTAAGCT
AAGCAGGGTACCATAGTTTGTTTGGAACCACGACGCCTATCTATCAGTCAGTCAGGCAGGTTGTG
TAAGCCTGGCTCTGTTTTTCTCAACACTATGGTGGGTGGAGGAGGGTACCCAAGGGTAAGATCGG
GAGTGTGAGCAGTACGAGGCCGAGAGGCTCCCATTATTGTTTGGAGGCAGGGGGCAGAGATGCCA
AACCTACCCCTATCTATCGGCCGTAAGAAGCTGTTTCTTTGAAGATTATGTTTTCGGGGTATCAA
ATAAATTTTTCATCCAAAGGGCCCCCCCGAATAAGAAGGCCCCCACTTCTCTATTTCCTACCCTA
AAAGGCCTGAAGCTAGATTTGAGATAAAAAAAGAGTATCCTTTAA
Found at i:1065587 original size:31 final size:29
Alignment explanation
Indices: 1065514--1065623 Score: 163
Period size: 30 Copynumber: 3.8 Consensus size: 29
1065504 GGAACGTGTC
1065514 GCTTGTCCGCACCGGGCAAGGTTAATGATT
1 GCTTGTCCGCACCGGGCAAGG-TAATGATT
1065544 -CTTGTTCCGCACCGGGCAAGGTAATTGATT
1 GCTTG-TCCGCACCGGGCAAGGTAA-TGATT
1065574 GCTTTGTCCGCACCGGGCAA-GTAATGATT
1 GC-TTGTCCGCACCGGGCAAGGTAATGATT
1065603 GCTTGT-CGCACCGGGCAAGGT
1 GCTTGTCCGCACCGGGCAAGGT
1065624 CAGGGTTGCT
Statistics
Matches: 75, Mismatches: 0, Indels: 12
0.86 0.00 0.14
Matches are distributed among these distances:
27 12 0.16
28 6 0.08
29 14 0.19
30 25 0.33
31 15 0.20
32 3 0.04
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (29 bp):
GCTTGTCCGCACCGGGCAAGGTAATGATT
Left flanking sequence: Indices 1065014 -- 1065513
CCAATGATCAGTGGGGCATTCGGGCTAAGCTAAGCAGGGTACCATAGTTTGTTTGGAACCACGAC
GCCTATCTATCAGTCAGTCAGGCAGGTTGTGTAAGCCTGGCTCTGTTTTTCTCAACACTATGGTG
GGTGGAGGAGGGTACCCAAGGGTAAGATCGGGAGTGTGAGCAGTACGAGGCCGAGAGGCTCCCAT
TATTGTTTGGAGGCAGGGGGCAGAGATGCCAAACCTACCCCTATCTATCGGCCGTAAGAAGCTGT
TTCTTTGAAGATTATGTTTTCGGGGTATCAAATAAATTTTTCATCCAAAGGGCCCCCCCGAATAA
GAAGGCCCCCACTTCTCTATTTCCTACCCTAAAAGGCCTGAAGCTAGATTTGAGATAAAAAAAGA
GTATCCTTTAACCTTATAGAAGGTAAGGTCCTTTCTTTATTCCCCTAAAGAGCTAGAAGTAAGGT
AAGGGTTGAGCCTGCGAACTCTCACCAACGGGAGAGGAACGTGTC
Right flanking sequence: Indices 1065624 -- 1066123
CAGGGTTGCTTGACGTTAGGAAAAGCAAGGAGAACCTGACCTGAGCGAAAGGGAGAACCTTCTTC
ATTTCTTTAAGGAGTATGGTGGGAAATGCGGGTCGCTGCTGGGGGTTTCCAACCCAAGTTATCTC
TGCTACTCATAATGAATAAGAATATCTAATGGTGCGAAGCCGCTTGGTTCCCTCCGGGGGGCATG
GATTTCTCTTCCGTTTCAGTTGCTAAAAAGAGTTTCATTGATGGACGTTGACAACGATATTGAGT
TCCACGAATACGAAGTGAGGGAAATTTGCCATTTGCTTGCTATCCATTCATTCGTGTCTTAAGTT
CGGAAGGGGATCTCAATATGTAATGAAGAAGAAACGATAGTAGCTCGTCGTTCCATAGGCTTTCT
CATATTTATTCAGAGGGAGTTTTTGGTAATATTCCAAAAGCGATTTTCGACGGGAGAATCGGAGC
TATTCAGAGGGAATTTGCATCAATCCCCAATTCCTAAACGAAGTG
Found at i:1066732 original size:28 final size:28
Alignment explanation
Indices: 1066674--1066726 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
1066664 TCGATGGCGG
*
1066674 CCCTCTCCTCTCCTTATCATTTCGAGCC
1 CCCTCTCCTCTCCTTATCATGTCGAGCC
1066702 CCCTCTCCTCTCCTTATCA-GTCGAG
1 CCCTCTCCTCTCCTTATCATGTCGAG
1066727 GGCCCCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.11, C:0.45, G:0.09, T:0.34
Consensus pattern (28 bp):
CCCTCTCCTCTCCTTATCATGTCGAGCC
Left flanking sequence: Indices 1066174 -- 1066673
GTTCAATTACCGCCGGAAATTTCGAATCATTACCGAATGAGGACGGCACGCTGTTGCGGCCTAAG
TGCGAAAGACGTGCAGTGGTCATGCCCGAAACCTAAATTGTGGAGTCAGCAACACCTCCAAATGG
CATTTCTTTCCCGTCGCATCGTTTTCGGACCGATAATAGTCACAGGGTTTCACTTTCTTCAGTGA
GTGATCAATATTGTCCCCTGCACACCGATACGGAAAAAAAGCTTTTCTCGTAGAACGATCGAGAA
GGCTTGGTGGTTCAAGATTGGTATCAAGAATGGTTATCGAATGGAGGGCGACCCGACCTAAGAAC
GAACGGAAAGTTCAATTGATATTGGGTGCCCCTCTCAAATAATTAACTTAAAAGGCGGTGGTCGA
GCCTGCTGTCGCTCCTTTAGGCGGGCCCTCACCCATTATGAATGGGGTGAGCCGAGAAATCGATG
CGGCGATGGCGGCGATGGCGGCCTCTCCCTCTCTCTCGATGGCGG
Right flanking sequence: Indices 1066727 -- 1067226
GGCCCCCTAAAAGGGTCCTTATAGATCGAGCGTGCTTACGCACCCTAAAGGGTTCCTTAACCAGT
CGAGCACCTAAAGGTTTTCCTTCTCCTCTTGGTTTACTTATTTGCCCCACCCAATAAGTCAAACC
CTGGGTCGAGGCACTAAAGGTCTTATCGTCGAGCCCCCTAAAGGGCCCTAGTATTCTTTAGGGTC
ACTTTCATATTTCATATGGTGAGGGTCCTTATCTAGTCGAAGCGCTTACGCATTCCTCTCCTCTC
CCTTAAAGGTCGACACCTAAAGGTCCTATGTCGAGCACCTAAAGGTCCTTATGTCGGAGCACCTA
AAGGTTAGGGTTTACTTATGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCTCCTTAAACATCG
AGCCCCTGCCGGTTAGGGTTTGCTATTGGGTGGGGCATTATGAATGAGTGATGTGACCCTAAAGG
AATATAGGGTGAGGTACGAACGCTCGACCCCCGCCCCCCAACCCC
Found at i:1067026 original size:22 final size:23
Alignment explanation
Indices: 1066995--1067056 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 23
1066985 TCCCTTAAAG
1066995 GTCGA-CACCTAAAGGTCC-TAT
1 GTCGAGCACCTAAAGGTCCTTAT
1067016 GTCGAGCACCTAAAGGTCCTTAT
1 GTCGAGCACCTAAAGGTCCTTAT
1067039 GTCGGAGCACCTAAAGGT
1 GTC-GAGCACCTAAAGGT
1067057 TAGGGTTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
21 5 0.13
22 13 0.34
23 6 0.16
24 14 0.37
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (23 bp):
GTCGAGCACCTAAAGGTCCTTAT
Left flanking sequence: Indices 1066495 -- 1066994
GAACGAACGGAAAGTTCAATTGATATTGGGTGCCCCTCTCAAATAATTAACTTAAAAGGCGGTGG
TCGAGCCTGCTGTCGCTCCTTTAGGCGGGCCCTCACCCATTATGAATGGGGTGAGCCGAGAAATC
GATGCGGCGATGGCGGCGATGGCGGCCTCTCCCTCTCTCTCGATGGCGGCCCTCTCCTCTCCTTA
TCATTTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGGGCCCCCTAAAAGGGTCCTTATAGATCG
AGCGTGCTTACGCACCCTAAAGGGTTCCTTAACCAGTCGAGCACCTAAAGGTTTTCCTTCTCCTC
TTGGTTTACTTATTTGCCCCACCCAATAAGTCAAACCCTGGGTCGAGGCACTAAAGGTCTTATCG
TCGAGCCCCCTAAAGGGCCCTAGTATTCTTTAGGGTCACTTTCATATTTCATATGGTGAGGGTCC
TTATCTAGTCGAAGCGCTTACGCATTCCTCTCCTCTCCCTTAAAG
Right flanking sequence: Indices 1067057 -- 1067556
TAGGGTTTACTTATGTTTGGGGGGTTAACAGTCGAGCATGCTTGCGCTCCTTAAACATCGAGCCC
CTGCCGGTTAGGGTTTGCTATTGGGTGGGGCATTATGAATGAGTGATGTGACCCTAAAGGAATAT
AGGGTGAGGTACGAACGCTCGACCCCCGCCCCCCAACCCCAATAAGCATCAAGGGCCATCCCTCG
CCCTTTTATTTGGTCGAGCAAGCAAGAAATTGATTTGACTTATTGGGTGGCCCCTCTCAAATAAG
TAACTAAAAGCCTGCTTACGCATCCTTTCATTTTGATCCAATCAATCAATTAGGTAGGGAATTCG
GGAGAGATCTCAATTCGGGATCTTGCGAAGAAAATGACTCTGAAAATGAAAGCCCCTTCCTGGGC
CTATTGCCCCCCGGGTTTGATCTCTTCTTCATTTAGGTAGGGCCGGCGCCCCTTACGCTTTGCTC
AGGTAAGGGAGAACACTTCCTAATCATTGCCTCCCTGCGCCTCTA
Found at i:1069153 original size:69 final size:69
Alignment explanation
Indices: 1069052--1069181 Score: 208
Period size: 69 Copynumber: 1.9 Consensus size: 69
1069042 TCATGAGCAT
* *
1069052 AATGACATATATAATATCAGTCATGAATCTCTCTCCTTCCCTCACTCA-CATCTCTCTGGTCATG
1 AATGACATATATAATATCAGTCATAAATCTCTCTCCTTCCCTCA-GCAGCATCTCTCTGGTCATG
1069116 TCAGA
65 TCAGA
* *
1069121 AATGACATATATAATATCAGTCATAAATCTCTCTCCTTCTCTCAGGAGCATCTCTCTGGTC
1 AATGACATATATAATATCAGTCATAAATCTCTCTCCTTCCCTCAGCAGCATCTCTCTGGTC
1069182 CTTATCTCAG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
68 1 0.02
69 55 0.98
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.34
Consensus pattern (69 bp):
AATGACATATATAATATCAGTCATAAATCTCTCTCCTTCCCTCAGCAGCATCTCTCTGGTCATGT
CAGA
Left flanking sequence: Indices 1068552 -- 1069051
CAGGGGGCTCGACTGATAAGGAGAGGAAAACCAACTTATTTATATACTTTACCAATGACCAAGGT
CTCTATTCATTAGTCTTTATACCCGGTAAGCACATTCATATCATGAACTAACGTAAGGGCATTGA
ACTGTGCCTCCACCTACATCTTCAGATATAAATATAAGTGAGAAGGAGCTATCATCATTCATTAC
TGGGAGAAGGAGCTATCATGTTTATTCCCTCCACATTCTCTTCCCTCAACTCGCCTCTCTCTACC
TACTTTTCTACGCTCCTGTTGGCCATGCAAAGACACATCCGATCACGTCTATTTTTCGTCTCTAT
TCCGATGGCGGCCCGTTGGTCGAGCGATGGCGGCCTTATAGTCGAGCGTTCGTTATTCATTATCA
AGGAAGCATGACTTTTTTAGTGACTTATTTGAGAGGGGCCACCCAAGCCCGCATCAAGGAAGCAT
GGCTCGACTGTTAAGGAGAGGAGATATCAATTCGATCATGAGCAT
Right flanking sequence: Indices 1069182 -- 1069681
CTTATCTCAGGAGCAGATCATCTGGTATGACACATATCTCGGTACCTCGGACCGAATCAAAACAA
GGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGTTTCTCTAAATGAAAATGGCGAATTAGAATAT
TTTCTAATATCTGGTCCACCCGAACTGAGTGCCTGCCCCCAACGGTGGTGCTTAAGATGGTAGAT
AAGCGGATCCATTCGATTAAGGCCCCTTTAAGGTATAGGTGCGGTAACTTACTTGCATTATATCT
TATACTATCCAGAGTGGGACATATATCCTCTGGCGGTAAGGACTTCTTTTTCTTCTCTCGGGTAT
GAGTGAAGGGTAACCTCTCTCTCTCGGGTAAGGTGCTTGATAGGGGACATATATTCTCGGGTATT
CATTGATTGATGGGGGCTTCCTTCTTATCTCGGCACCGCCCCTCTGGCTATGATCGATCAACTAT
GATCGGCTGACAATGATTGGAATGATTGACTATCGGCGGACCCTC
Found at i:1069173 original size:23 final size:24
Alignment explanation
Indices: 1069147--1069196 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
1069137 TCAGTCATAA
*
1069147 ATCTCTC-TCCTTCTCTCAGGAGC
1 ATCTCTCGTCCTTATCTCAGGAGC
1069170 ATCTCTCTGGTCCTTATCTCAGGAGC
1 ATCTCTC--GTCCTTATCTCAGGAGC
1069196 A
1 A
1069197 GATCATCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
26 16 0.70
ACGTcount: A:0.16, C:0.34, G:0.16, T:0.34
Consensus pattern (24 bp):
ATCTCTCGTCCTTATCTCAGGAGC
Left flanking sequence: Indices 1068647 -- 1069146
CACATTCATATCATGAACTAACGTAAGGGCATTGAACTGTGCCTCCACCTACATCTTCAGATATA
AATATAAGTGAGAAGGAGCTATCATCATTCATTACTGGGAGAAGGAGCTATCATGTTTATTCCCT
CCACATTCTCTTCCCTCAACTCGCCTCTCTCTACCTACTTTTCTACGCTCCTGTTGGCCATGCAA
AGACACATCCGATCACGTCTATTTTTCGTCTCTATTCCGATGGCGGCCCGTTGGTCGAGCGATGG
CGGCCTTATAGTCGAGCGTTCGTTATTCATTATCAAGGAAGCATGACTTTTTTAGTGACTTATTT
GAGAGGGGCCACCCAAGCCCGCATCAAGGAAGCATGGCTCGACTGTTAAGGAGAGGAGATATCAA
TTCGATCATGAGCATAATGACATATATAATATCAGTCATGAATCTCTCTCCTTCCCTCACTCACA
TCTCTCTGGTCATGTCAGAAATGACATATATAATATCAGTCATAA
Right flanking sequence: Indices 1069197 -- 1069696
GATCATCTGGTATGACACATATCTCGGTACCTCGGACCGAATCAAAACAAGGTGCGAAGCCGCTT
GTCCCTCCGGGGGCAAGGTTTCTCTAAATGAAAATGGCGAATTAGAATATTTTCTAATATCTGGT
CCACCCGAACTGAGTGCCTGCCCCCAACGGTGGTGCTTAAGATGGTAGATAAGCGGATCCATTCG
ATTAAGGCCCCTTTAAGGTATAGGTGCGGTAACTTACTTGCATTATATCTTATACTATCCAGAGT
GGGACATATATCCTCTGGCGGTAAGGACTTCTTTTTCTTCTCTCGGGTATGAGTGAAGGGTAACC
TCTCTCTCTCGGGTAAGGTGCTTGATAGGGGACATATATTCTCGGGTATTCATTGATTGATGGGG
GCTTCCTTCTTATCTCGGCACCGCCCCTCTGGCTATGATCGATCAACTATGATCGGCTGACAATG
ATTGGAATGATTGACTATCGGCGGACCCTCTGGCAAAGACCTCCA
Found at i:1071420 original size:17 final size:18
Alignment explanation
Indices: 1071398--1071432 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
1071388 TAGCGTCACT
1071398 AGCTGC-GGCAACTAACG
1 AGCTGCAGGCAACTAACG
1071415 AGCTGCAGGGCAACTAAC
1 AGCTGCA-GGCAACTAAC
1071433 TCTATAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.11
Consensus pattern (18 bp):
AGCTGCAGGCAACTAACG
Left flanking sequence: Indices 1070898 -- 1071397
CGCACAGAACCTCGAGGAAACCTAATGTCGCTGGTCAATACGTACCGAGCTACGTACCGCACAAC
GTACCGCACAGAGCCAGCTACGTACCGCTGGTTCAAGAGCCAAGCCAGCCTCATTTCTATAAGCT
TACCGAAGTACGTACCGACGGCTTACCGTTGGAGATATAAATAGAGGTTCAATTGGTATGGTAAA
TTGGGCCATTACTACCGGTCTTTATGGCAATTGGTCGAGTGCCATTCCTTCCCTCAAACGTGCTG
ATGTATGGAGTAGTGATAGGCAGGTTATGGTCGCTACCCCACCCTGGTCTAATGAGGGTAGGGCT
TTAAATGAGGGTCGTCAATCGAAAGTATTGATATGTCAATAGCTTTAGAACGTCAATTGCTACGT
CAATGATTATTTAGCTTATTTAGGAGGGTGAACGGAAGGGATTCTATAGCGTCAATAGCTTCTTT
GGGGGCGACTAGAAAAATAGCTTATTTAGGGCGACTAGCGTCACT
Right flanking sequence: Indices 1071433 -- 1071932
TCTATAGCTACCCAGCTTCTATAGCTATCCGGCAGAGGCTTCTATAGCCCGGTTTATACAACGTT
ATAACCAGTTCGATAGCTACCCGGTAGAGGCAGGAATAGTGAGTCTAGCCTCATACGTACTCAGT
GTAGCCCTGAAATGTATAGTGAGTCTAGCCCCGAATAGCAAGTGTAGTGGGTCCGGCTTGGGCCT
CGCCCTCGAGAGCCTCATGGTTTCTTCGATGGAGCCTCCTTCTTTTCTTCCTTAGGTCCCTAGTT
TCTTTAAGTACCCATAGAATGATTCGATAGGGTGAGGGCTCAGGGTTATGAATGGATGAACTGCT
GGGTTATTAACGGTTTAGAACGGAACTGAACTGCTGAACAGCTTTCTGCAGGCGGAACTGCTTTA
TGGCGGCACTGCTAATTCCCTGCTTGACCTGCTTTCTGTAGGCCCAATGCTAGAACTAATCAAAA
AATATATCCATCCACAGGCTAGGTAGCTGGCATCTATCGACCCAA
Found at i:1072793 original size:12 final size:12
Alignment explanation
Indices: 1072776--1072808 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
1072766 GGTCACTCCT
1072776 TCGATAGGTCAC
1 TCGATAGGTCAC
1072788 TCGATAGGTCAC
1 TCGATAGGTCAC
*
1072800 TCGAAAGGT
1 TCGATAGGT
1072809 TAGGTCACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (12 bp):
TCGATAGGTCAC
Left flanking sequence: Indices 1072276 -- 1072775
ATTTCTATTATATATGCAATTATGCTTGCCAGCCTGGAAGCATATGTATTTGATTATAACCAGGA
CTTCCCCCTATTAACGAAGTGGGTGAGGGGTGATCGACCTAATTTGACTTAGTGAGTTCGTTAGC
GAAGTGTAATCAGCTGGGGGCATGGCCCTATTTGTTTGTGGTGTCTTTCTTTTTGACTCGCTAAC
TCAGGCCTTCTTCTCTATTATTTGGTCTTACCTGAGTTGAGTGAGTCTCTCTCGGCCTTATCTTC
TGTCTTTCTAGATGCATGCGATCATGCGAGCCAGCCTGCCTTATCCATTATATTCGGCCTGCCAG
GAAAGATATTTATTCTCTGTGGGCCATCCCGCTCCCTGAAAGTCGTGGGCCATCGTATCCCTACA
CGTCTTAGGCACACTAAAGCCAGTAGAGACATACCCGACCGAGAGACAGAGACTTTAAGGGATCG
TTCTCGCCATCGTTTTCCTTCCGTACACAAGGTTAGGTCACTCCT
Right flanking sequence: Indices 1072809 -- 1073308
TAGGTCACCACACTCGAATGACTTTCCTCAATAATCCACACGACCTTTGTAATGGGTGTGGGGGT
AGATCCATAATTCGGTGGAATTAGCGCAGGGAATGTCAGTAGGTAACGGGTTTATTCCCACACGC
TACGTTTCTTCCGGATTCAATCTCACTGAGTCCATGTCGTAGAGGGACACTGGGGATACCCTTTT
CTATAGATTATACAACCAACGTAATAATAATAACGGACCCAGCCCGGCTGGTAAAAGGACCTAGT
AATCTCTATCAATCATATCTCTTTGTATACAATATTATACAATATTATGGTTAGTCTGCGGATCT
GCATGAATCTGGGCTTTGAATTGGTCATTTTTAGAGTCAAACCTGTCCTCGCCTTTATTAGGTCT
TTAGAGCGACTCCGTTACAAATGACCAATCGCAGCTACTTTAAGGGAGCTTAAGCGGCCATAGAA
CGCACGCGAATGCCCTCACTATATGAATAGTGAGCGTTGACACCC
Found at i:1076619 original size:24 final size:23
Alignment explanation
Indices: 1076592--1076638 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
1076582 ACAGCCTTTG
*
1076592 GAGCAACTCACATAGCAGCACATA
1 GAGCAACTCACATACCAG-ACATA
* *
1076616 GAGCACCTGACATACCAGACATA
1 GAGCAACTCACATACCAGACATA
1076639 ACAGCCATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.40, C:0.30, G:0.17, T:0.13
Consensus pattern (23 bp):
GAGCAACTCACATACCAGACATA
Left flanking sequence: Indices 1076092 -- 1076591
TTAGGATTCCGTTAGTCTTCAACCGAGATATGAGGAAGGAAAAAGGGGGGGGCTGGACACACTGC
CTTGATTTATTGATTGAGTAAGCTGGATGCCAGGAGGAGTCCCAAGAGTTGATGCCAGCAGGTTT
CGACCCACTTGATTGATGCCAGTAATAGCTGGGATAGGTATGCCAGTAATAGCTGGGATGGGTTA
CTTCGGATACTTGACTTGGATACTCAGTTGGGATACCGGGCTGGGCTGGATACAGTCGGTGCCTA
GAAGCTACGGTCAGTGCTAGATAGAACAATCTATACTCATAAAATATATATATACTCAGGGCATG
AAGCTCTAGTCGGTGCATAAATGAAGTCTAGTCCGTGCCCAGGAGTCATACAGGAGTCTTTGCCG
AGGATAGCCTATGCTGGGAGGAGTCGTTGCCACGGGGTCACCGCCATACAGACAACTGCCAGTCA
TACCGGGAATGGGCTCAAAGGCAAGTCCCACAGATACAGCCTTTG
Right flanking sequence: Indices 1076639 -- 1077138
ACAGCCATACTCAATAAGCACCAGACGTAGCCAGTCATAGCCATACAGTCATACCCGATATATAA
GGACCCCATACCCCGGGACGGGGCTTACATCTATGAAACACACGTTCCTACCTCGACTGGATGGA
ATGAATAATATTCTATATGATGATTCACAATTGAAGGGGCATAGTGCAATCAATAGTGCAACATG
ATGAACATAGTAGTGCAAAAGACGGTCTAGAGAACAGGCGCGCTAGGATAAAAACGACACAGGCT
AGTCCAAGAAACAATGGCTGGTCAAATCACCGGGCTTGCTTGCTGAATGGCTAGAACCACCCGTA
ACGTTAGGCTATACAGGTTACACCCGATGATGATTATGCTCAGATCAACAAGAGAAGCACCCATT
GATTTAGAGATTGAGAGATTTGATTGATGGCCAACAGAGAGATACCGGAATGGTTGGTAGGACAA
CAGCCCACAGATACCGGAATGGGCGGGACTACGGACGGATCGAAA
Found at i:1082486 original size:25 final size:24
Alignment explanation
Indices: 1082455--1082520 Score: 114
Period size: 25 Copynumber: 2.7 Consensus size: 24
1082445 CATCCTTAGG
1082455 GTCGAGCACCTAAAGGTCCTTAACA
1 GTCGAGCACCTAAAGGTCCTTAA-A
*
1082480 GTCGAGCACCTAAAGGTCCTTAAG
1 GTCGAGCACCTAAAGGTCCTTAAA
1082504 GTCGAGCACCTAAAGGT
1 GTCGAGCACCTAAAGGT
1082521 TCAATTTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 17 0.43
25 23 0.57
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (24 bp):
GTCGAGCACCTAAAGGTCCTTAAA
Left flanking sequence: Indices 1081955 -- 1082454
AGGGAGATTCCAAGCATTCATTATATATGTCATTATGCATTTCAATTGACTTATTGGGTGGGGGT
CATTTGCATGACTAGTGCTTCTCCCGTTTCTGCTTACTCCTTGCACTGGGGTGCTTATTTGGTGA
GGGGCCCCAAAAGAGAGTTGTTCGTCTCCTCTCCTTATCAGTCGAGCCGATGGCGGCCTTATTAG
TCGAGCGTGCTTACGCACCCTGACGGACCTCACACGTTACCTCACCCTGCCGGACCTTGCCCGGT
GCGGACAAGCGACTACGTACCTTCTCATTTGGTCGGCCTCATCAAAACCTCCGCCTCCTCTCCTT
ATCAGTCGAGTCACTAACGTACCTCTCCCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTC
TCGATGGCGGCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGG
Right flanking sequence: Indices 1082521 -- 1083020
TCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTATCAG
TCGAGCCTGCTTACGCATCCTTAACAGCCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGG
GGGGTTAACAGTCGAGCCTGCTTGCGCATCCTTATCAGTCGAGCCCCTGACGGACCTGGTTGGTC
GATATTGAAAGGCCTGATTACGCTTCTCTGATTACGCTTCCGAGTCGGGGTACCGCAACATATAG
AATATATGTCAGTCATTCCGCTACTAAACTCAGGCATTCCGCGACTAGAATGTGAGCCATTTCTT
CATGCACAATGACATATATAGTAGGCTCGATTCATGCATCTGATCAACCACCGCAACATATATAT
AATATAGTGATGGACTTCCGCTAATGGAAGAAGGCATTTCCCTACTGGAATGTGAGCCATTTCTT
CATGCATAATGACATATGCCCATAGCAGCATTTTCTGGTGTCATT
Found at i:1082512 original size:24 final size:24
Alignment explanation
Indices: 1082447--1082520 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
1082437 TGCTTACGCA
*
1082447 TCCTTAGGGTCGAGCACCTAAAGG
1 TCCTTAAGGTCGAGCACCTAAAGG
*
1082471 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAA-GGTCGAGCACCTAAAGG
1082496 TCCTTAAGGTCGAGCACCTAAAGG
1 TCCTTAAGGTCGAGCACCTAAAGG
1082520 T
1 T
1082521 TCAATTTACT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 23 0.50
25 23 0.50
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (24 bp):
TCCTTAAGGTCGAGCACCTAAAGG
Left flanking sequence: Indices 1081947 -- 1082446
GATGAATGAGGGAGATTCCAAGCATTCATTATATATGTCATTATGCATTTCAATTGACTTATTGG
GTGGGGGTCATTTGCATGACTAGTGCTTCTCCCGTTTCTGCTTACTCCTTGCACTGGGGTGCTTA
TTTGGTGAGGGGCCCCAAAAGAGAGTTGTTCGTCTCCTCTCCTTATCAGTCGAGCCGATGGCGGC
CTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCACACGTTACCTCACCCTGCCGGACCT
TGCCCGGTGCGGACAAGCGACTACGTACCTTCTCATTTGGTCGGCCTCATCAAAACCTCCGCCTC
CTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCCGCTGGTCGAGCGTGCTCCGCATCCTCTC
CTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCA
Right flanking sequence: Indices 1082521 -- 1083020
TCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTATCAG
TCGAGCCTGCTTACGCATCCTTAACAGCCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGG
GGGGTTAACAGTCGAGCCTGCTTGCGCATCCTTATCAGTCGAGCCCCTGACGGACCTGGTTGGTC
GATATTGAAAGGCCTGATTACGCTTCTCTGATTACGCTTCCGAGTCGGGGTACCGCAACATATAG
AATATATGTCAGTCATTCCGCTACTAAACTCAGGCATTCCGCGACTAGAATGTGAGCCATTTCTT
CATGCACAATGACATATATAGTAGGCTCGATTCATGCATCTGATCAACCACCGCAACATATATAT
AATATAGTGATGGACTTCCGCTAATGGAAGAAGGCATTTCCCTACTGGAATGTGAGCCATTTCTT
CATGCATAATGACATATGCCCATAGCAGCATTTTCTGGTGTCATT
Found at i:1082748 original size:14 final size:14
Alignment explanation
Indices: 1082729--1082755 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1082719 ATTGAAAGGC
1082729 CTGATTACGCTTCT
1 CTGATTACGCTTCT
1082743 CTGATTACGCTTC
1 CTGATTACGCTTC
1082756 CGAGTCGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.30, G:0.15, T:0.41
Consensus pattern (14 bp):
CTGATTACGCTTCT
Left flanking sequence: Indices 1082229 -- 1082728
ACGTACCTTCTCATTTGGTCGGCCTCATCAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCAC
TAACGTACCTCTCCCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCT
CTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGT
TATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCAC
CTAAAGGTCCTTAAGGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTC
GAGCCCTGCCGGGGGCATCCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAACAGCCGAGC
ACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTT
ATCAGTCGAGCCCCTGACGGACCTGGTTGGTCGATATTGAAAGGC
Right flanking sequence: Indices 1082756 -- 1083255
CGAGTCGGGGTACCGCAACATATAGAATATATGTCAGTCATTCCGCTACTAAACTCAGGCATTCC
GCGACTAGAATGTGAGCCATTTCTTCATGCACAATGACATATATAGTAGGCTCGATTCATGCATC
TGATCAACCACCGCAACATATATATAATATAGTGATGGACTTCCGCTAATGGAAGAAGGCATTTC
CCTACTGGAATGTGAGCCATTTCTTCATGCATAATGACATATGCCCATAGCAGCATTTTCTGGTG
TCATTTCGGCTATCGAGTCATGCCATAATGACATATATAATACACTACGATCTGACAAAGAGAGG
ATGCGTAAGCAGGCTCGACCAACGGGAGAGGACATCATGACTAATCGAATCATGCCCATAGTAGT
ATGGGGCCTTTGCTTCCTTCCCTCCCGGGCCCTTTTCCCACTCCTGGAAATGGCCTCCCTACTCC
CTGAGCCCAGCGGAACCAGCGGAACCTGCTCTTGGACTGATCTAA
Found at i:1084637 original size:29 final size:29
Alignment explanation
Indices: 1084605--1084666 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
1084595 GCCAATCCAC
* *
1084605 CTCCCTTCTGACA-GTCCAATAGTGACCT
1 CTCCCTTCTGACATGTCAAATAGTAACCT
*
1084633 ACTCCCTTCTTACATGTCAAATAGTAACCT
1 -CTCCCTTCTGACATGTCAAATAGTAACCT
1084663 CTCC
1 CTCC
1084667 AACACTGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 16 0.55
30 13 0.45
ACGTcount: A:0.24, C:0.35, G:0.10, T:0.31
Consensus pattern (29 bp):
CTCCCTTCTGACATGTCAAATAGTAACCT
Left flanking sequence: Indices 1084105 -- 1084604
TAAAGCCAATAACCGCCTTCGGCTACACTAACTCTTACTAACTCTATACTATCATAACGCACGCA
TATAGCGCGTATGGACGCGTAATACACGAAGTGTATGAAACGAAAGGATATTCTCTATCTTACCG
AATCACCTGAGCGGGCGTAACCTGATAGAGATTCTTTTCCCTTCATTATCACCTGACATGATCAC
CTGAGCGGGCGTACCCTGCCCTACCTTCGTTGTCCTACCGGCCGGAATTATCACCTGAGCCCATG
GATACTGCCCTAGACTAGAGGGGAAACATGGATACTGCTTATACTGCCCCAGAGACATCCCATGG
ATACTGCCCTAGAGCTAGAGGGGGAAAGGGTATTATCTCTTTGACTTCAAAGGTTTACTGTTTAC
TTAAAGGGAGATACTCTTCTCTCAGCTCTTCCCGGTAGTTAGCGGGCCCTCCCTTTCAATAAGTA
ATCTGAAGGTAAGCCACAACCCGCTGATCTCATGAGCCAATCCAC
Right flanking sequence: Indices 1084667 -- 1085166
AACACTGATTCATAAGCGCCACGAATCTCCTAGGGTGAAGGGGACTGGCTAGAGCCCTAGGGAAA
AAGAAAGAGATTGCCAGGGTTGACCATATGATACTTATCCCAGCTTGAAAGTCGCCTAGATATCT
ATACAGATTTTCTAGATATTTCCCATCTATAAAGTATGTTTAAGGACCCTTTATTTGCCTTGGAG
GGGAAGGAATCACTTAAATCACACCTATCTATACCGGGAAATCACATATATACCGGGACTTTCAA
AGGCCTTATTGACTTTTGTCTTTCTTATTGATCTAAGCTTGCCGGGCCCTCCCTTTCAATAAGTA
ATCTAATGAATTACTGTTTTGGCAAGCCTCCTTATCGGCAGGGCAGAAACAGGCTTCACAGGGCG
GTCTTCCTTACCGCTATACGCTGGAATGACTATAGACACTGGCTGGCCGCTGGAATGACACTATA
CACCGGCTGGTTTGACGCTCGAATGACTGTCGCTGGCATTTCTGT
Found at i:1085124 original size:29 final size:29
Alignment explanation
Indices: 1085075--1085131 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
1085065 TACCGCTATA
*
1085075 CGCTGGAATGACTATAGACACTGGCTGGC
1 CGCTGGAATGACTATAGACACCGGCTGGC
*
1085104 CGCTGGAATGAC-ACTATACACCGGCTGG
1 CGCTGGAATGACTA-TAGACACCGGCTGG
1085132 TTTGACGCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.19
Consensus pattern (29 bp):
CGCTGGAATGACTATAGACACCGGCTGGC
Left flanking sequence: Indices 1084575 -- 1085074
ACAACCCGCTGATCTCATGAGCCAATCCACCTCCCTTCTGACAGTCCAATAGTGACCTACTCCCT
TCTTACATGTCAAATAGTAACCTCTCCAACACTGATTCATAAGCGCCACGAATCTCCTAGGGTGA
AGGGGACTGGCTAGAGCCCTAGGGAAAAAGAAAGAGATTGCCAGGGTTGACCATATGATACTTAT
CCCAGCTTGAAAGTCGCCTAGATATCTATACAGATTTTCTAGATATTTCCCATCTATAAAGTATG
TTTAAGGACCCTTTATTTGCCTTGGAGGGGAAGGAATCACTTAAATCACACCTATCTATACCGGG
AAATCACATATATACCGGGACTTTCAAAGGCCTTATTGACTTTTGTCTTTCTTATTGATCTAAGC
TTGCCGGGCCCTCCCTTTCAATAAGTAATCTAATGAATTACTGTTTTGGCAAGCCTCCTTATCGG
CAGGGCAGAAACAGGCTTCACAGGGCGGTCTTCCTTACCGCTATA
Right flanking sequence: Indices 1085132 -- 1085631
TTTGACGCTCGAATGACTGTCGCTGGCATTTCTGTACACGCTGGCACAAGGCCCACGCTGGCTGG
CTTTCCCACGCTGGACTTACCGGGCATGGGAACTAATGAAATGGGAACGTCATCTAAGTAAGGGG
TTGTTGAACTTGTTGGGCGGATTATGGGCCTTGAGCTATAGAAGTGGCCTTATAAGAGAGATATA
GAGACGGGTCTTCCTATATAAGAGAGAGACTTGCTTTCCTTCCTAGAGAGACTGACTGACCTTCC
TTTCCCGGGATAACGGTGAAAATAGCTTTCCTTGCCTTATAGGTGGTTCGTTAAGCCGCTCTGAG
GTCAGGTTCCTCACTCAGGCGAGAAATAAAAGAAGGTATACAGTTAAGGCTCCTCACTAACGCTC
TTAGGCAATATAAAAAGAAAATAGGGTAGGCAAGCACTTACCCACGGTTCAACTTGCAGAGATAA
AGCATTATTCTCCTTGCCTGGATGGATAAGGAGAGCTAGCAGATC
Found at i:1087340 original size:21 final size:21
Alignment explanation
Indices: 1087289--1087342 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
1087279 GCCAATACCC
* * *
1087289 GCAATCAAGTCATACTCAACT
1 GCAATCAAGTAATAATCAACA
** *
1087310 GCAAGAAAGTAATAATCACCA
1 GCAATCAAGTAATAATCAACA
1087331 GCAATCAAGTAA
1 GCAATCAAGTAA
1087343 GCATCAACTG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.13, T:0.19
Consensus pattern (21 bp):
GCAATCAAGTAATAATCAACA
Left flanking sequence: Indices 1086789 -- 1087288
ATCAAAGGCTTGCTATCGCTCTATCTATAGTGAGCCGCAGAACTCGTTTAGGTGGCTGTTCGCCT
TTGGATCTTCACTTCAATAGTTGTCTAAGATAGCAGCGGCGGTAGATTGGGGAATGCTAATCTCA
TGGAGGAATTCAAATCTTTCTAGGAAAGCCTCTTCTTTCTGGTCTACATCAAGTGGATTCTTCGC
CTGGACAAATCTAGAGATAGAATTCTGGAGAGAATTGATCGTATGCTAGTAAGTGAGGAGCAATC
ACATCAGTGAAGTCAGAGAAGAGTGGCAGTCGGATGAAATAAAAGAAAAAGCGGAGATACTTATG
ATCAGACTATGGATAGAGAAAGAAGCGGAGTGTATCTATAAGCTACAAAGCCTCAAGAGATTAGA
AGAGAGAATCAGAAAAAAATCAAGGAGGGGAGACAGATGTTTTCACGCCCATTTTCGAAATAAAA
AAAGAGGACAGTCACATTCCTATTAGTAGGTTGAGGCCAATACCC
Right flanking sequence: Indices 1087343 -- 1087842
GCATCAACTGCTTTACCGAGTTCAAGAAGAACAGTTCCTTGAGCAGATGTGATTGCAAATCTTCT
TCATTCATCTTCTTGGTCTGCTGAATGAATTGATCCCTGTTGTTCGAGCGCATGCTATTCTTTTG
CAGTTCCCGCTGGAGTGACGTCTTCCGGTCTAAGGGTAGCTACTACCGCTGTGTAAAGATCAACT
CCTGCTGCTATGAGTCTCGTCTTCGTGGAGTTCCCGGATGATAAGGAAGAAAGATGGCTTGGATT
TACAGATAGGGGCTTTCTCCAGCCTACCCATGTGTAAAGAAAAGCTGCTGTTGGTTCTTCTTCCT
AGTCTGATTCCTACTAGTGCAGGGCCCACGGGGCAAAGTCGTTAGACACAGAGATCTATCCTACA
TATAAGGAGTCACCGATTCTGTTAGGCAGGAACTAGAAAGATCAGAAGTTGGTTCTGAGTCGGCT
GGTAATCCAGAAAAGGCTGCTGAACAGAGTGTCGAAGGGACACAG
Found at i:1096277 original size:27 final size:27
Alignment explanation
Indices: 1096260--1096318 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
1096250 AGGACCCTTT
* *
1096260 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
1096287 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
1096314 AGGGG
1 AGGGG
1096319 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 1095760 -- 1096259
AGAGAAGTAATAATAGCAGTAGTTCCTAAACAATCAATTTCAATTTACTTATTGGGTGCCCCTCT
CAAATAAGTAACTAGCGCTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCC
TGCCGGGGGCACCCTACGAGATAGGCCATTTGACCGTGGCGGAGGTTCTTCAACCTTGACTTCCT
ACATGCATAATTACATATATAATGAATGATGAAGTTCAAGCTTTTGAGGACCCGGTAGGACCCGG
TAGGGGGCTCGACTAAAAGGCCCGTTAGGGCCCTATATTATTTAGGGGCGGAGCCACTCACTATT
CCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
GAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 1096319 -- 1096818
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTTAGC
ACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTAT
TCATATGGTGAGGGATTTATCTCTCTATTTTCTGAAAATAGAGGTCCGGAGGGACTCGACTGAGG
TTACGAGGTCGAGGGACTCGGCCGAGGTTACGAGGTCGAGGAGAGGGGGCTCGACCAAAAGGAGA
GGAGCTTTCCTATGCCTCTGCACTCTCTCGATTGGAGACGGAAGGACATCCAAGAAACGGTGGCC
CTCCAACTCTCTATTGGCCTGATGACCACACATTCAGACTGGTTAGAAGCCCCAACAAATCAAGG
CTGTTTCCGTGCATTCTATCACCACTTTAGACACATGTTAGGGATAACACAGCGTTAGAATCTCA
TTTCATTCATAATAGAATCTAATAAAGGGATGCTGATATTGCCAC
Found at i:1096361 original size:26 final size:26
Alignment explanation
Indices: 1096325--1096374 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1096315 GGGGCGGAGC
1096325 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
1096351 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
1096375 TGCGTTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 1095825 -- 1096324
CAAATAAGTAACTAGCGCTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCC
TGCCGGGGGCACCCTACGAGATAGGCCATTTGACCGTGGCGGAGGTTCTTCAACCTTGACTTCCT
ACATGCATAATTACATATATAATGAATGATGAAGTTCAAGCTTTTGAGGACCCGGTAGGACCCGG
TAGGGGGCTCGACTAAAAGGCCCGTTAGGGCCCTATATTATTTAGGGGCGGAGCCACTCACTATT
CCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGGGCTCGACTGATAAGGA
GAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 1096375 -- 1096874
TGCGTTAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCAC
ACTCACTATTCATATGGTGAGGGATTTATCTCTCTATTTTCTGAAAATAGAGGTCCGGAGGGACT
CGACTGAGGTTACGAGGTCGAGGGACTCGGCCGAGGTTACGAGGTCGAGGAGAGGGGGCTCGACC
AAAAGGAGAGGAGCTTTCCTATGCCTCTGCACTCTCTCGATTGGAGACGGAAGGACATCCAAGAA
ACGGTGGCCCTCCAACTCTCTATTGGCCTGATGACCACACATTCAGACTGGTTAGAAGCCCCAAC
AAATCAAGGCTGTTTCCGTGCATTCTATCACCACTTTAGACACATGTTAGGGATAACACAGCGTT
AGAATCTCATTTCATTCATAATAGAATCTAATAAAGGGATGCTGATATTGCCACTTCCTCTAACT
AATCTGAATGCATATATTATATATGTAATTATGGTCTGTCGATTG
Found at i:1096529 original size:27 final size:27
Alignment explanation
Indices: 1096497--1096554 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
1096487 TAGAGGTCCG
*
1096497 GAGGGACTCGACTGAGGTTACGAGGTC
1 GAGGGACTCGACCGAGGTTACGAGGTC
*
1096524 GAGGGACTCGGCCGAGGTTACGAGGTC
1 GAGGGACTCGACCGAGGTTACGAGGTC
1096551 GAGG
1 GAGG
1096555 AGAGGGGGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.19, G:0.45, T:0.16
Consensus pattern (27 bp):
GAGGGACTCGACCGAGGTTACGAGGTC
Left flanking sequence: Indices 1095997 -- 1096496
TTTGAGGACCCGGTAGGACCCGGTAGGGGGCTCGACTAAAAGGCCCGTTAGGGCCCTATATTATT
TAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGACTGTCAAGGACCCT
TTAGGGGGCTCGACTGATAAGGAGAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTGAGGA
CCGGTAGGGGCTCGACTGTCAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCC
TTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGG
AGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCATATGGTGAGGGTGCGTTAGCACA
CTCGACTGCCTTTGGTTACTTATTTGAGAGGAGGGGAGAGGGTGCGTTAGCACACTCACTATTCA
TATGGTGAGGGATTTATCTCTCTATTTTCTGAAAATAGAGGTCCG
Right flanking sequence: Indices 1096555 -- 1097054
AGAGGGGGCTCGACCAAAAGGAGAGGAGCTTTCCTATGCCTCTGCACTCTCTCGATTGGAGACGG
AAGGACATCCAAGAAACGGTGGCCCTCCAACTCTCTATTGGCCTGATGACCACACATTCAGACTG
GTTAGAAGCCCCAACAAATCAAGGCTGTTTCCGTGCATTCTATCACCACTTTAGACACATGTTAG
GGATAACACAGCGTTAGAATCTCATTTCATTCATAATAGAATCTAATAAAGGGATGCTGATATTG
CCACTTCCTCTAACTAATCTGAATGCATATATTATATATGTAATTATGGTCTGTCGATTGAATTC
GTTGATTCAGCAATTGAAGTTGATCCACCAGCGTAAGCAGATCAAGCAGCCAGGGTGTAAACTGC
AGGGGCGCCAGTAGTATGAGTAAAAGTAGCTTCAGGACCGGGTGAAGTTTACCCAGTTGAAGAAG
CAGCTTATCTAGAAACATTTGATCGAACAAAAGCATCAATAGCAG
Found at i:1100658 original size:35 final size:35
Alignment explanation
Indices: 1100607--1100685 Score: 131
Period size: 35 Copynumber: 2.3 Consensus size: 35
1100597 GAGCTAGGCC
* *
1100607 AGCTAAGCCACACCAGAAAAAATCCTATATATAGT
1 AGCTCAGCCACACCAGAAAAAACCCTATATATAGT
1100642 AGCTCAGCCACACCAGAAAAAACCCTATATATAGT
1 AGCTCAGCCACACCAGAAAAAACCCTATATATAGT
*
1100677 AGGTCAGCC
1 AGCTCAGCC
1100686 CAGCCCGGCT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.42, C:0.27, G:0.14, T:0.18
Consensus pattern (35 bp):
AGCTCAGCCACACCAGAAAAAACCCTATATATAGT
Left flanking sequence: Indices 1100107 -- 1100606
AGCGAAGGTCCCAAAACCGAAGCGTAGGTAAGGAGCTCGCAGAGAATGAAATTCTCTCACACTAT
ATACGTAATTTCAGCTTGCTCGAAGAGAATGAAATTCTCTGAGAGCTAGCGATGGCTCGAAGAGC
CTCTGTGCCATACCATACCATTAATGAAAGGAAGGGGGTTTAAGGGGGAAGGAAGAGGGACCAGC
TCCCTTCCTTCCCCATTCGCCATACCTGGTTACGTTCTTCAAATCTGATCGAAGTTGCTCCTTTT
CCAGGAGTGAAATGACTTAAATATCTTATATATGTTGCGGTGGTTGATCAGATGCATGAAAATTG
GCATGAAAATTGATCAGATTCCAGTGGTCAAATGACTGAGTTGAGTAGCGGAATTTCGACGATAT
CTTATATACGTTGCGGTGGTTGAGAAGATGCATGAATCTTAGGCCCTGCCGTCCCTACTTGGGCT
CATCTCTATTTTGTCAGTCAATTGGGCAGGCTCAGGAGCTAGGCC
Right flanking sequence: Indices 1100686 -- 1101185
CAGCCCGGCTTTTTGGAAATGCCAGTAGGGAAATTCCTCTCCCGTTGGTCGAGTCATGCTTACGC
ATCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCATGCTTACGCATC
CTGATTTTATTCGCGGAATTCCCTCACTATATTATATATGTTGCGGTGGTTTTCCAGATGCATGA
AGAAATGGCTCACATTCTAGTCGCGGAATGACCATTTATAGTAGCGGAATGACTGAAATCTCTTA
TATATGTTGCGGTACCCCGACTCAATCAGGGAAGCGTAATCAGAGAAAGCGGTCTCAGGCCTTGA
AATATCGACCAACCAGGATAGATTGAAAGGGGAGCAAGAGATGCCAGGCCTGAGATCTCGACCGA
CCTGGTATGATCAATTGTTCCATTGGCTCTTGCTCGAAACACCTACTATTATATATGTCATTTCG
ACCAGTGTTTCCGTTAGAGTCAAAAGAATCAAATTCCTTCAATGA
Found at i:1103657 original size:131 final size:131
Alignment explanation
Indices: 1103423--1103683 Score: 522
Period size: 131 Copynumber: 2.0 Consensus size: 131
1103413 GTGTCTTGTT
1103423 TAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCGTTTGCTAATAGGATGC
1 TAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCGTTTGCTAATAGGATGC
1103488 GTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAATCTGGTATGACACATA
66 GTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAATCTGGTATGACACATA
1103553 G
131 G
1103554 TAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCGTTTGCTAATAGGATGC
1 TAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCGTTTGCTAATAGGATGC
1103619 GTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAATCTGGTATGACACATA
66 GTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAATCTGGTATGACACATA
1103684 TCTAATTCAT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (131 bp):
TAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCGTTTGCTAATAGGATGC
GTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAATCTGGTATGACACATA
G
Left flanking sequence: Indices 1102923 -- 1103422
CTCCCAATTCTCCATGAATAGTTCATACATGGCCAATTCCCCACCAGGTTGATCCCGATCTTGTG
GTGCATTCACTCACCCAATTCGATCAAGTTCATTCTTCTGGTAAGTCTGCGAAAGCGTAATTACG
TAGATAAAGAATGAATGCATAATGACATATATAATAGCAGCATTTTTGAAGGATTGATCTACACT
ACTTTCCCCCCCACTCTAAGTCAACTCGTATCGGAAAAGTGAATTCAAAAGAAATGAATTGACGA
CGCTTTCCCGGAGTATCGGAGTTGGTCGAAATGAACAAAATCGATCTCTCAAAATTGCATAATTA
CATATATAATATATGCATTGTCTACTAAAGCGTAATTACGTAGATAAAGAATGACCAGCAGCACG
ATCCCCAGGGACGTCCTAAGAGGGGCGAGAAGCAAACGAGCCGCTCTAAAGACCCCCACTAACCA
ATAAGTCATTAAGAGGGCGAGGGTGGAAATGCGAAGTGTCTTGTT
Right flanking sequence: Indices 1103684 -- 1104183
TCTAATTCATGACCGGAAGAAATCCATTTTTTTATGAAAGAATCTGGTCGGACCCATTTTCAGAA
TAAGAAAGAGGGCTCTTTTAGGGGAAAAAAGAGAAGTCAAACTGTTGCTCATTGGTATTGGAGCG
CCCCCTTCCCCTGCGCTCGGTTTCACCTTATATAATAGTAATAGCGAAGGTTGTTTCGTTCGTTG
AGGTCAGAGTGTGGAACCGAGCCGCCCCCCCCTTATATAATAGAGGAGCTTCCCTTATCAATATA
GGAGTTTCCCCTTGCGGATAGGGATAACGGGAAAGAAAGGTCCCGGAGGGGCTTGCGCTTCCTAG
TGCAAGGAATAACTTGGGAAACCTTTCGAATCGAATAGCGCCAACTTTTCGTTGGTAAAACCAAC
GCCAGTATCATATTGACTCTCTCTCGTGAAATCAATAAGAGTTTACAAGAGTGACGTAGTTTCAC
GAATTATCTCCTTTCCAAAGCTGCGCAAGGTGGGTGCCCCCCCAC
Found at i:1103946 original size:21 final size:22
Alignment explanation
Indices: 1103908--1103953 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
1103898 AGCCGCCCCC
*
1103908 CCCTTATATAATAGAGGAGCTT
1 CCCTTATACAATAGAGGAGCTT
* *
1103930 CCCTTAT-CAATATAGGAGTTT
1 CCCTTATACAATAGAGGAGCTT
1103951 CCC
1 CCC
1103954 CTTGCGGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (22 bp):
CCCTTATACAATAGAGGAGCTT
Left flanking sequence: Indices 1103408 -- 1103907
GCGAAGTGTCTTGTTTAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCGT
TTGCTAATAGGATGCGTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAAT
CTGGTATGACACATAGTAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCG
TTTGCTAATAGGATGCGTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAA
TCTGGTATGACACATATCTAATTCATGACCGGAAGAAATCCATTTTTTTATGAAAGAATCTGGTC
GGACCCATTTTCAGAATAAGAAAGAGGGCTCTTTTAGGGGAAAAAAGAGAAGTCAAACTGTTGCT
CATTGGTATTGGAGCGCCCCCTTCCCCTGCGCTCGGTTTCACCTTATATAATAGTAATAGCGAAG
GTTGTTTCGTTCGTTGAGGTCAGAGTGTGGAACCGAGCCGCCCCC
Right flanking sequence: Indices 1103954 -- 1104453
CTTGCGGATAGGGATAACGGGAAAGAAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAAT
AACTTGGGAAACCTTTCGAATCGAATAGCGCCAACTTTTCGTTGGTAAAACCAACGCCAGTATCA
TATTGACTCTCTCTCGTGAAATCAATAAGAGTTTACAAGAGTGACGTAGTTTCACGAATTATCTC
CTTTCCAAAGCTGCGCAAGGTGGGTGCCCCCCCACCCCCACCCAAGGGGGTGCCTGCGCCTTTTC
CCCCCTACCGACCGGTGGGTCGGGACCCCTTGACTGACTTGGGGTAGGGGGGGTCACGGGTAAAA
GCACAGTGATTCCGAATTAAGTCGTTAGGGGGATAACGTCGATCGAATTGGGGAACAAGAGTGAT
ATAGGAGACATGACTATGGGAAAACAACGATTCCCTATTCCCAAACAACCCATATTATCCACACT
TAACCAGCATTTGATAGATCATCCGACCCCGAGCAATCTAAGTTA
Found at i:1103955 original size:22 final size:23
Alignment explanation
Indices: 1103907--1103956 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
1103897 GAGCCGCCCC
*
1103907 CCCCTTATATAATAGAGGAGCTT
1 CCCCTTATACAATAGAGGAGCTT
* *
1103930 -CCCTTAT-CAATATAGGAGTTT
1 CCCCTTATACAATAGAGGAGCTT
1103951 CCCCTT
1 CCCCTT
1103957 GCGGATAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (23 bp):
CCCCTTATACAATAGAGGAGCTT
Left flanking sequence: Indices 1103407 -- 1103906
TGCGAAGTGTCTTGTTTAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGCG
TTTGCTAATAGGATGCGTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGAA
TCTGGTATGACACATAGTAGTTCAAACGCCGCCCAAAGTACTTCTACGCGAGGTAGGTCTCCGGC
GTTTGCTAATAGGATGCGTAGCTTGAAACCTTCGACCTTGAGTTACTTATTGGGTGGGGGGCCGA
ATCTGGTATGACACATATCTAATTCATGACCGGAAGAAATCCATTTTTTTATGAAAGAATCTGGT
CGGACCCATTTTCAGAATAAGAAAGAGGGCTCTTTTAGGGGAAAAAAGAGAAGTCAAACTGTTGC
TCATTGGTATTGGAGCGCCCCCTTCCCCTGCGCTCGGTTTCACCTTATATAATAGTAATAGCGAA
GGTTGTTTCGTTCGTTGAGGTCAGAGTGTGGAACCGAGCCGCCCC
Right flanking sequence: Indices 1103957 -- 1104456
GCGGATAGGGATAACGGGAAAGAAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAATAAC
TTGGGAAACCTTTCGAATCGAATAGCGCCAACTTTTCGTTGGTAAAACCAACGCCAGTATCATAT
TGACTCTCTCTCGTGAAATCAATAAGAGTTTACAAGAGTGACGTAGTTTCACGAATTATCTCCTT
TCCAAAGCTGCGCAAGGTGGGTGCCCCCCCACCCCCACCCAAGGGGGTGCCTGCGCCTTTTCCCC
CCTACCGACCGGTGGGTCGGGACCCCTTGACTGACTTGGGGTAGGGGGGGTCACGGGTAAAAGCA
CAGTGATTCCGAATTAAGTCGTTAGGGGGATAACGTCGATCGAATTGGGGAACAAGAGTGATATA
GGAGACATGACTATGGGAAAACAACGATTCCCTATTCCCAAACAACCCATATTATCCACACTTAA
CCAGCATTTGATAGATCATCCGACCCCGAGCAATCTAAGTTATTG
Found at i:1108684 original size:27 final size:27
Alignment explanation
Indices: 1108645--1108714 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
1108635 AGGTACGAAC
* **
1108645 GCTCGACTAATAAGGATGCGTAAGCAG
1 GCTCGACTGATAAGGACCCGTAAGCAG
* * **
1108672 GCTCGACTGATAAGGACCCTTTAGGGG
1 GCTCGACTGATAAGGACCCGTAAGCAG
1108699 GCTCGACTGATAAGGA
1 GCTCGACTGATAAGGA
1108715 GAGGAGAGGA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (27 bp):
GCTCGACTGATAAGGACCCGTAAGCAG
Left flanking sequence: Indices 1108145 -- 1108644
AATGAGAAAGAAAAGAAAAGAGAATATGAGAAAGAAAAGAGAATGGGGCCTGGAAAAGCTTTCCT
GTCACGAAGTATACTTATTTACTTACTTTCAGAAATGAAAGTAAGGAGCGAAAAGCACTTTCCCG
CTGAGGGGAAGGAGCAAAGCCGCTTTCCCGACGAAGGTGATTTATTGCTCACCCATAAGCCCCCA
CCCAATAAGCAAAACAAAGGAGCAAAGCAAAGCCGCCGACAAAGGATGCGCTAGCGGGCTCGACC
AATAGGGAGAGGTATTTATGGCTCGACCGATAGGGAGAGGAGGGCAAGGAGGCGCCCCAATAGTA
GTAGGGAGAGGAATTTCTTGATCGACCATAAGGTCCGGCAGGGCTCGACTGTGAAAGGAGAGGAT
GCGGAGCACGCTCGACCAGCGCCCCCCACCCAATAAGCATCAAGGGCCCTATATTATTTAGGGGT
CACTCACTATTCCGATGGTGAGGGCCGGCAGGGTGAGGTACGAAC
Right flanking sequence: Indices 1108715 -- 1109214
GAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGGACCCTTTAG
GGGGCTCGACCGTTAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGGATTT
GGAAGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGCCGCCATCGCCGCCATCGCC
GCCATCGCCGCCATCGCCGCCATCGCCGCCATCGCCTTTACACTTTGGAAACCCCCGTACATGTA
GTAGTCCAACAAACACCAAAACAAGCAGAGAGAGGATATAACCCCACTTGTCCTAGTGTGACCTC
ATGTTATAAACGTAATTAGAAGATATTATATACGCAATTACGCCAACCAACCAACCAACCACCTC
GCCCATATCCATATATTGTTCCAGATCCACCAGCACAAATAGCCGTATATATAGAAGATCCAAAG
CTAGCACGAGTAGATCCAGGTCCAAATTCAGTCGTTGATCCAGTT
Done.