123.fas.2.7.7.80.10.50.500.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Length:  1191054

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641713--641797	23	3.7	23	69	12	66	38	14	36	10	1.80
641690--641803	46	2.5	46	83	0	147	42	13	34	9	1.76
641709--641843	46	2.9	46	83	2	164	35	14	37	11	1.83
641926--641955	15	2.0	15	93	0	51	16	26	36	20	1.93
644129--644158	15	2.0	15	100	0	60	6	13	46	33	1.69
645452--645527	24	3.2	24	68	9	66	11	32	18	36	1.87
646421--646463	14	3.1	14	96	0	77	30	20	11	37	1.89
647011--647042	14	2.3	14	100	0	64	12	15	18	53	1.73
652237--652283	14	3.4	14	84	0	58	27	21	31	19	1.97
655946--655971	12	2.2	12	100	0	52	53	7	30	7	1.57
656874--656915	20	2.1	20	95	0	75	33	28	33	4	1.78
658034--658232	88	2.3	88	100	0	398	23	18	30	27	1.98
658302--658360	27	2.2	27	100	0	82	28	10	50	10	1.68
658926--658955	15	2.0	15	100	0	60	13	6	33	46	1.69
659358--659464	32	3.2	31	69	15	97	19	23	38	18	1.93
659832--660081	95	2.6	95	96	1	457	23	23	34	18	1.96
660155--660219	24	2.7	24	97	0	121	21	26	24	27	1.99
660279--660354	25	3.0	25	98	0	143	23	19	27	28	1.98
660535--660578	23	1.9	23	100	0	88	20	27	27	25	1.99
660301--660916	222	2.7	222	96	3	1106	27	19	31	21	1.98
660757--660800	23	1.9	23	100	0	88	20	27	27	25	1.99
660891--660962	35	2.0	37	89	5	112	26	13	40	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660948--660983	11	3.4	11	96	3	65	38	0	61	0	0.96
660948--660983	5	6.8	5	87	12	54	38	0	61	0	0.96
660949--660982	16	2.1	17	94	5	61	35	0	64	0	0.94
660980--661127	76	1.9	76	98	0	287	31	31	20	17	1.96
661111--661185	25	3.0	25	88	3	125	21	22	26	29	1.99
661111--661177	24	2.7	25	90	4	109	19	25	25	29	1.98
661183--661219	6	6.5	6	87	12	60	35	0	64	0	0.94
661183--661219	17	2.2	17	100	0	74	35	0	64	0	0.94
661182--661217	11	3.3	11	92	7	56	36	0	63	0	0.94
661287--661336	26	2.0	24	85	11	66	16	34	16	34	1.90
666891--666919	14	2.1	14	100	0	58	37	27	6	27	1.82
672953--672986	14	2.5	14	90	4	52	29	14	17	38	1.90
676927--676988	23	2.7	23	100	0	124	16	20	38	24	1.92
677849--677919	19	3.7	19	82	0	97	40	18	23	16	1.90
678716--678762	24	2.0	24	100	0	94	27	0	51	21	1.48
680656--680714	27	2.2	27	100	0	118	10	50	10	28	1.68
680666--680736	27	2.6	27	84	0	79	16	38	16	28	1.91
680699--680928	120	1.9	120	100	0	460	21	31	24	22	1.98
681109--681148	19	2.1	19	100	0	80	47	5	42	5	1.47
683347--683405	27	2.2	27	100	0	82	28	10	50	10	1.68
683412--683461	26	1.9	26	100	0	100	24	20	26	30	1.98
683457--683689	88	2.7	88	95	2	409	24	19	32	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684165--684276	54	2.1	53	83	9	140	33	25	15	25	1.95
688953--688997	15	3.0	15	100	0	90	40	20	6	33	1.78
689524--689582	27	2.2	27	100	0	82	28	10	50	10	1.68
689589--689638	26	1.9	26	100	0	100	24	20	26	30	1.98
689808--689866	27	2.2	27	100	0	82	28	10	50	10	1.68
689873--689922	26	1.9	26	100	0	100	24	20	26	30	1.98
689405--690260	284	3.0	284	100	0	1712	22	20	35	21	1.96
690092--690150	27	2.2	27	100	0	82	28	10	50	10	1.68
690157--690206	26	1.9	26	100	0	100	24	20	26	30	1.98
690665--690723	27	2.2	27	100	0	82	28	10	50	10	1.68
690730--690779	26	1.9	26	100	0	100	24	20	26	30	1.98
691238--691296	27	2.2	27	100	0	82	28	10	50	10	1.68
691303--691352	26	1.9	26	100	0	100	24	20	26	30	1.98
691417--691469	28	2.0	27	85	7	72	20	22	30	26	1.98
691559--691616	27	2.2	25	90	6	89	22	24	29	24	1.99
693844--694080	119	2.0	119	100	0	474	21	28	27	22	1.99
694977--695108	28	4.7	28	100	0	264	21	18	31	29	1.97
695382--695439	27	2.2	27	90	6	93	24	29	24	22	1.99
695382--695446	27	2.5	24	80	11	76	26	29	21	23	1.99
697431--697590	31	5.2	31	96	0	284	11	36	22	30	1.89
697484--697603	62	2.0	61	87	0	159	16	35	20	27	1.94
699845--699922	30	2.6	30	100	0	156	14	14	39	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700877--700938	31	2.0	31	83	0	79	43	14	19	22	1.87
701833--701879	18	2.6	18	93	0	76	25	17	21	36	1.94
703335--703413	39	2.0	39	100	0	158	25	20	36	17	1.94
708714--708773	30	2.0	30	81	9	70	31	20	30	18	1.96
710927--711012	43	2.0	43	100	0	172	16	20	13	48	1.80
711605--711680	25	3.0	25	96	0	143	22	19	27	30	1.98
711995--712052	27	2.1	27	100	0	80	29	10	50	10	1.70
712041--712091	20	2.5	20	100	0	102	27	19	49	3	1.66
713216--713265	26	1.9	26	100	0	100	30	26	20	24	1.98
713292--713379	31	2.8	31	98	1	167	28	29	20	21	1.98
713670--713718	25	2.0	25	95	0	89	22	20	26	30	1.98
714724--714781	27	2.2	25	90	6	89	22	24	29	24	1.99
714578--714883	124	2.5	123	90	9	463	28	18	30	21	1.97
718555--718753	88	2.3	88	98	0	380	22	19	31	27	1.98
719891--719917	14	1.9	14	100	0	54	33	14	22	29	1.94
720764--720791	14	2.0	14	100	0	56	35	14	28	21	1.92
721944--721969	13	2.0	13	100	0	52	0	23	46	30	1.53
722496--722525	15	2.0	15	100	0	60	53	13	13	20	1.72
723383--723432	26	1.9	26	100	0	100	24	20	26	30	1.98
728014--728119	53	2.0	53	96	3	196	33	15	26	24	1.95
728158--728237	39	2.1	39	83	4	101	36	17	28	17	1.93
729634--729706	26	2.9	25	93	4	112	24	27	32	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729643--729706	26	2.5	26	100	0	128	26	26	34	12	1.92
730384--730433	17	2.9	17	90	0	82	24	34	24	18	1.96
739146--739177	16	2.1	15	94	5	55	40	25	0	34	1.56
742474--742541	24	2.8	24	97	0	127	22	25	26	26	2.00
744482--744529	23	2.1	23	100	0	96	16	35	27	20	1.94
751223--751281	27	2.2	27	100	0	82	28	10	50	10	1.68
751543--751632	46	2.0	46	100	0	180	21	31	17	30	1.96
752668--752703	9	4.0	9	100	0	72	11	22	55	11	1.66
755712--755741	15	2.0	15	100	0	60	20	13	33	33	1.91
756754--756826	34	2.3	31	83	9	85	31	24	27	16	1.96
756763--756849	34	2.5	36	85	7	108	28	21	28	20	1.98
758902--758967	25	2.6	25	97	0	123	24	19	28	27	1.99
760184--760242	27	2.2	27	100	0	82	28	10	50	10	1.68
760635--760675	21	2.0	21	100	0	82	19	12	34	34	1.89
762249--762303	16	3.4	16	100	0	110	38	41	7	12	1.71
762249--762303	8	6.9	8	74	0	56	38	41	7	12	1.71
762297--762362	24	2.7	24	85	2	87	34	22	18	24	1.96
763675--763898	112	2.0	112	100	0	448	30	20	30	18	1.97
771220--771278	27	2.2	27	100	0	82	28	10	50	10	1.68
772335--772442	52	2.0	54	85	3	148	26	14	10	48	1.76
773503--773589	13	6.9	13	71	20	69	39	6	31	22	1.81
773503--773602	9	11.4	9	78	5	91	38	8	31	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773503--773566	4	15.0	4	78	12	65	42	4	29	23	1.74
773646--773682	19	1.9	19	88	0	56	59	0	24	16	1.37
774172--774230	27	2.2	27	100	0	82	28	10	50	10	1.68
774346--774395	26	1.9	26	100	0	100	24	20	26	30	1.98
774874--774926	28	2.0	27	85	7	72	20	22	30	26	1.98
775035--775092	27	2.2	25	90	6	89	22	24	29	24	1.99
780308--780366	27	2.2	27	100	0	118	10	50	10	28	1.68
780318--780388	27	2.6	27	84	0	79	16	38	16	28	1.91
780459--780504	1	46.0	1	100	0	92	0	100	0	0	0.00
780506--780704	88	2.3	88	98	0	380	27	31	19	22	1.98

Tables:   1   2   3   4   5   6   7   8