Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 4 of 8
Found at i:503094 original size:27 final size:27
Alignment explanation
Indices: 503056--503155 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 27
503046 TCCTCTCCTC
*
503056 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTAACAGTCGAGCCCCCTAAAGGG
*** *** **
503083 TCCTTAACAGTCGAGCATGCTTGCGCA
1 TCCTTAACAGTCGAGCCCCCTAAAGGG
*
503110 TCCTTAACAGTCGAG-CACCTAAA-GG
1 TCCTTAACAGTCGAGCCCCCTAAAGGG
*
503135 TCCTTATCAGTCGAGCCCCCT
1 TCCTTAACAGTCGAGCCCCCT
503156 GTCGGGTCCT
Statistics
Matches: 53, Mismatches: 19, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
25 14 0.26
26 6 0.11
27 33 0.62
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (27 bp):
TCCTTAACAGTCGAGCCCCCTAAAGGG
Left flanking sequence: Indices 502556 -- 503055
TTCCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTTCAATTGACTTATTGGGTGCCCTTCTCAA
ATAAGTAACTAGCGTTGGTCGAGCCTGCTGTAGCATCCTCTCCTCTCCTCTCCCTTAGGGTCGAG
CACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCAT
GCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTGTCGGGTCCT
TGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGTCC
TCTCCCGGTGGTCGAGCAACTAAAGTTCCTTGCTTTCCTAACGTCAAGCAAGCAAGAAATTTCAA
TTGACTTATTGGGTGCCCTTCTCAAATAAGTAACTAGCGTTGGTCGAGCCTGCTGTAGCATCCTC
TCCTCTCCTCTCCCTTAGGGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 503156 -- 503655
GTCGGGTCCTTGCTTTCCTAACGTCAAGCAAGCACTACGTTCCTTGCACTAGGAAGCGCAAGCCC
CTCCGGGTCCTTGCCCGGTGCGGACAAGCAATAAATTACCTTGCACTAGGAAGCGCAAGCCCCTC
CGGGACCTTGCCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCCCGATGCGGACAAGCAGG
TAAACCTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTTTCCTAACGTCAAGCA
AGCCCCTACCGGTCCTTGCCCGGTGCGGACAAGCAATAAATTACCTTATCTCTTCTATCTATTAG
GGGGGAAGCAATATAAGGTCCCGGAGCCTATCTAGCTTGACTCAGGCTTTGAGGGTAGGTGATTC
ATAGATAGGTAAGGTGGATGGATTTAGAAATCGTAAACTCAAATTATTCTATACCATCCATTCGC
CGGCGCGGGACCCACTTGTATTGGTTCCCCCCCCCCTATCTAGAT
Found at i:504241 original size:18 final size:18
Alignment explanation
Indices: 504214--504248 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
504204 GCTTATAGAG
* *
504214 GGAACTAGCTCTCGTAGT
1 GGAACCAGCTATCGTAGT
504232 GGAACCAGCTATCGTAG
1 GGAACCAGCTATCGTAG
504249 AAGGAAGTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.23
Consensus pattern (18 bp):
GGAACCAGCTATCGTAGT
Left flanking sequence: Indices 503714 -- 504213
GGCGTAGGAATGGGGGACGCAAGGCTTCCTTCACACACAGGCTCTGAAGGAAGTAAGGGAAAGCG
GGGCTGAAATACCAGCTAATCGGACCCAGGGACAAGGAAGTGGGGATAGACGCAATTAGGTAGGC
CCAATTCAGAGAGAATCGATCGGAGGGGGCTGCTGAATTCCCGTAACGAGGACGCCGGCCACTGG
CATTTGGCGGGCAAGGAGTGACGACTATTACTATATTTATTCCCCTCTCCCGGTCTAAAGACCCT
AAATTCATATCTTCCCGACGGCTTAGGATGCCTTACTGTAACGAAGTATTTCTAATCCTCGGGCC
AAGGAACAATAGCAAGCAGGGTTTATAAGGTTCTTCTATGGAGTTGTGTACGACGATACTTGGCC
TTATTCTATATCGACTTTGTTCTATCTAGTTTCATTCTTATCAAAGAAATCAAGCCAACCTACCT
TCCTAAAAGCATCCACAACTTCAGCATTAAGAGAAGCTTATAGAG
Right flanking sequence: Indices 504249 -- 504748
AAGGAAGTTGAACTCACTAGCCTTCTTAGAATCGTAGAGAGGACAAGACAGACTTACTAGCCTTA
TATCGTTGAGCTCACTCACTGAAGCCATATATCGTTGAATTCACACACTTCAGCCTTAAGAGAAG
CTTATAGAGGAGAAGGCCCACATCAAACTGGCCGAGAGAGGAGAAGGACTTACCGCAGAGAAGGA
CTTACCCCCAGACGAGAGGAGAGAGAGTTCCACATAACACGATACCCGAGAGAGAAGGAACACAT
CACTGGCCGAGAAAGAAGGAAGCCCACATCACTAGCCGATAGGAGATGTCCCCTATCGAGTCACC
ATACCCGAGAGAAGAGGGAAGTCAAGTCCTTACCGCTAGACGACGAGAGGGAAGTCTTTACCGCA
GAGAAGGACCCCATCCCGAGAGAGAAGTTCCCCATCGTTACCACCAGAAGAGAGAGAGCCAAGTT
GCCATACGTGAGAAATGAGGATTATCCCCATGTTCCCACCAGATG
Found at i:504368 original size:29 final size:29
Alignment explanation
Indices: 504307--504362 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
504297 CAGACTTACT
* * *
504307 AGCCTTATATCGTTGAGCTCACTCACTGA
1 AGCCATATATCGTTGAACTCACACACTGA
*
504336 AGCCATATATCGTTGAATTCACACACT
1 AGCCATATATCGTTGAACTCACACACT
504363 TCAGCCTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
AGCCATATATCGTTGAACTCACACACTGA
Left flanking sequence: Indices 503807 -- 504306
GGGACAAGGAAGTGGGGATAGACGCAATTAGGTAGGCCCAATTCAGAGAGAATCGATCGGAGGGG
GCTGCTGAATTCCCGTAACGAGGACGCCGGCCACTGGCATTTGGCGGGCAAGGAGTGACGACTAT
TACTATATTTATTCCCCTCTCCCGGTCTAAAGACCCTAAATTCATATCTTCCCGACGGCTTAGGA
TGCCTTACTGTAACGAAGTATTTCTAATCCTCGGGCCAAGGAACAATAGCAAGCAGGGTTTATAA
GGTTCTTCTATGGAGTTGTGTACGACGATACTTGGCCTTATTCTATATCGACTTTGTTCTATCTA
GTTTCATTCTTATCAAAGAAATCAAGCCAACCTACCTTCCTAAAAGCATCCACAACTTCAGCATT
AAGAGAAGCTTATAGAGGGAACTAGCTCTCGTAGTGGAACCAGCTATCGTAGAAGGAAGTTGAAC
TCACTAGCCTTCTTAGAATCGTAGAGAGGACAAGACAGACTTACT
Right flanking sequence: Indices 504363 -- 504862
TCAGCCTTAAGAGAAGCTTATAGAGGAGAAGGCCCACATCAAACTGGCCGAGAGAGGAGAAGGAC
TTACCGCAGAGAAGGACTTACCCCCAGACGAGAGGAGAGAGAGTTCCACATAACACGATACCCGA
GAGAGAAGGAACACATCACTGGCCGAGAAAGAAGGAAGCCCACATCACTAGCCGATAGGAGATGT
CCCCTATCGAGTCACCATACCCGAGAGAAGAGGGAAGTCAAGTCCTTACCGCTAGACGACGAGAG
GGAAGTCTTTACCGCAGAGAAGGACCCCATCCCGAGAGAGAAGTTCCCCATCGTTACCACCAGAA
GAGAGAGAGCCAAGTTGCCATACGTGAGAAATGAGGATTATCCCCATGTTCCCACCAGATGAAAG
AGAGGCTAGCACAGAGGGCAAGGAAAGGATCCCGCTTGCTTGACGTTAGGAGAGCAAGGAAATGG
ATGGCTTTTCTCTACTTTCAACCCCGTGTGGGCGGTGGACGGGGG
Found at i:504525 original size:26 final size:27
Alignment explanation
Indices: 504489--504547 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 27
504479 AACACGATAC
* *
504489 CCGAGAGAGAAGGAA-CACATCACTGG
1 CCGAGAAAGAAGGAACCACATCACTAG
504515 CCGAGAAAGAAGGAAGCCCACATCACTAG
1 CCGAGAAAGAAGGAA--CCACATCACTAG
504544 CCGA
1 CCGA
504548 TAGGAGATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 14 0.50
29 14 0.50
ACGTcount: A:0.39, C:0.27, G:0.27, T:0.07
Consensus pattern (27 bp):
CCGAGAAAGAAGGAACCACATCACTAG
Left flanking sequence: Indices 503989 -- 504488
CGACGGCTTAGGATGCCTTACTGTAACGAAGTATTTCTAATCCTCGGGCCAAGGAACAATAGCAA
GCAGGGTTTATAAGGTTCTTCTATGGAGTTGTGTACGACGATACTTGGCCTTATTCTATATCGAC
TTTGTTCTATCTAGTTTCATTCTTATCAAAGAAATCAAGCCAACCTACCTTCCTAAAAGCATCCA
CAACTTCAGCATTAAGAGAAGCTTATAGAGGGAACTAGCTCTCGTAGTGGAACCAGCTATCGTAG
AAGGAAGTTGAACTCACTAGCCTTCTTAGAATCGTAGAGAGGACAAGACAGACTTACTAGCCTTA
TATCGTTGAGCTCACTCACTGAAGCCATATATCGTTGAATTCACACACTTCAGCCTTAAGAGAAG
CTTATAGAGGAGAAGGCCCACATCAAACTGGCCGAGAGAGGAGAAGGACTTACCGCAGAGAAGGA
CTTACCCCCAGACGAGAGGAGAGAGAGTTCCACATAACACGATAC
Right flanking sequence: Indices 504548 -- 505047
TAGGAGATGTCCCCTATCGAGTCACCATACCCGAGAGAAGAGGGAAGTCAAGTCCTTACCGCTAG
ACGACGAGAGGGAAGTCTTTACCGCAGAGAAGGACCCCATCCCGAGAGAGAAGTTCCCCATCGTT
ACCACCAGAAGAGAGAGAGCCAAGTTGCCATACGTGAGAAATGAGGATTATCCCCATGTTCCCAC
CAGATGAAAGAGAGGCTAGCACAGAGGGCAAGGAAAGGATCCCGCTTGCTTGACGTTAGGAGAGC
AAGGAAATGGATGGCTTTTCTCTACTTTCAACCCCGTGTGGGCGGTGGACGGGGGTTCACAGAAT
GCCCCAGACGATGAGAGGAGAAGGGGAGAAGTCCTTACCGCCAGATGACGAGAGAGTGAGTGAGG
TCATATGCCACGAGACGAGATAGTGATTGAGGTGAAAAAGTTGCCAACAGCCCAAGAGAAACCGC
TTTAAAACCACTCAGCACTCTGTTACGGATAACCTATGTTCTCTA
Found at i:506023 original size:14 final size:14
Alignment explanation
Indices: 506004--506035 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
505994 GCCATAAGCT
*
506004 GCTCATTGCTAGAA
1 GCTCATTGCCAGAA
506018 GCTCATTGCCAGAA
1 GCTCATTGCCAGAA
506032 GCTC
1 GCTC
506036 TAGTCATAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (14 bp):
GCTCATTGCCAGAA
Left flanking sequence: Indices 505504 -- 506003
ATAAACACATGTTCCCAAATGAAATCTTTTACTGCCCACGGGTCTCTACCTGTTCTCTAATCAAC
CAGCTGCTACCCAATAAGCTATTGGACCTACTGCTTACGGGTCTCTAGTCAGCCTGGTCTCACCC
AGTGAAATAATTAGCTATGTTCTGCCCACGGGGCTCTACTCAAACTGGTATCTATTTTCACAGCT
GCTAATAAGCTCTGTTCTCTCATCGAGCTGCCCAATTCAACTATGTTACCTACTGCGGTTGCTTC
TAGTTTCACCCTGCTTGCCACACGCCCACTAACCACAGACCTCAGCTACCAGCCCCAACAATCTC
AGTTCTTACCACGGGGCCGCTCTAGTCACACTGCTCTATCATACACCTGCACTGTTTACACTTGC
TTTCTACTTACAGCCAACTTACAATGGAGGATGGTCTCATCAATAGTTCGGTATAACACAACATA
CAGTCAGTGATGAATTGATCAACCTACATTGCTTAGCCATAAGCT
Right flanking sequence: Indices 506036 -- 506535
TAGTCATAGAAGCTCTAGTCATAGCAGTAACAGTCATAGCCATAAAGCCATACCCGAGAGATATA
GACCCCCAACCCCGGGAAGGTACTTTGTGCAGTGAAGGAACGGGGCTAGGTGCGTGCAGTGAATT
AATGGCTGTGCGAATGGCTTCTTTGAACCCGGTTGAATTGATTCTATGTGGTGCTGTAATGCCTT
CTGTGAACGGCTTCGTGCATGCAGTTTATGGATAACTTATTGTTAGTTTGTGAACCGATGGATTG
ATTCTGTTAATTGCCTCTATGTTTGCTGTAATGGCACGTTAGTTACCCATGTTCCCACCGGAAGA
GAGATAAGGCAGCCCAACTTACCGCTACGCAACCATGGCCCTCTACCTCGACGGAACAGCCCTCG
ACCCTCGAACTCTACCCTCTACCCTCTACCCTTGACCTCTATCTCCACCTCACATAGTGCCATAG
CCACACATAGCTAGATATCATATACGTCATATAGAGCTTATACTG
Found at i:506048 original size:15 final size:15
Alignment explanation
Indices: 506028--506059 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
506018 GCTCATTGCC
506028 AGAAGCTCTAGTCAT
1 AGAAGCTCTAGTCAT
506043 AGAAGCTCTAGTCAT
1 AGAAGCTCTAGTCAT
506058 AG
1 AG
506060 CAGTAACAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (15 bp):
AGAAGCTCTAGTCAT
Left flanking sequence: Indices 505528 -- 506027
TCTTTTACTGCCCACGGGTCTCTACCTGTTCTCTAATCAACCAGCTGCTACCCAATAAGCTATTG
GACCTACTGCTTACGGGTCTCTAGTCAGCCTGGTCTCACCCAGTGAAATAATTAGCTATGTTCTG
CCCACGGGGCTCTACTCAAACTGGTATCTATTTTCACAGCTGCTAATAAGCTCTGTTCTCTCATC
GAGCTGCCCAATTCAACTATGTTACCTACTGCGGTTGCTTCTAGTTTCACCCTGCTTGCCACACG
CCCACTAACCACAGACCTCAGCTACCAGCCCCAACAATCTCAGTTCTTACCACGGGGCCGCTCTA
GTCACACTGCTCTATCATACACCTGCACTGTTTACACTTGCTTTCTACTTACAGCCAACTTACAA
TGGAGGATGGTCTCATCAATAGTTCGGTATAACACAACATACAGTCAGTGATGAATTGATCAACC
TACATTGCTTAGCCATAAGCTGCTCATTGCTAGAAGCTCATTGCC
Right flanking sequence: Indices 506060 -- 506559
CAGTAACAGTCATAGCCATAAAGCCATACCCGAGAGATATAGACCCCCAACCCCGGGAAGGTACT
TTGTGCAGTGAAGGAACGGGGCTAGGTGCGTGCAGTGAATTAATGGCTGTGCGAATGGCTTCTTT
GAACCCGGTTGAATTGATTCTATGTGGTGCTGTAATGCCTTCTGTGAACGGCTTCGTGCATGCAG
TTTATGGATAACTTATTGTTAGTTTGTGAACCGATGGATTGATTCTGTTAATTGCCTCTATGTTT
GCTGTAATGGCACGTTAGTTACCCATGTTCCCACCGGAAGAGAGATAAGGCAGCCCAACTTACCG
CTACGCAACCATGGCCCTCTACCTCGACGGAACAGCCCTCGACCCTCGAACTCTACCCTCTACCC
TCTACCCTTGACCTCTATCTCCACCTCACATAGTGCCATAGCCACACATAGCTAGATATCATATA
CGTCATATAGAGCTTATACTGAATAGCGTAGAAAATACAGTGACT
Found at i:507045 original size:18 final size:18
Alignment explanation
Indices: 507024--507075 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
507014 CTCAAGCGCA
507024 CAGTGAGTCTAGAAAGAC
1 CAGTGAGTCTAGAAAGAC
* *
507042 CAGTGAGTCTAGAAAAAG
1 CAGTGAGTCTAGAAAGAC
*
507060 AAGTGAGTCT-GAAAGA
1 CAGTGAGTCTAGAAAGA
507076 AGACGCAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.42, C:0.12, G:0.29, T:0.17
Consensus pattern (18 bp):
CAGTGAGTCTAGAAAGAC
Left flanking sequence: Indices 506524 -- 507023
GAGCTTATACTGAATAGCGTAGAAAATACAGTGACTAAAGAGCACGCGCGCTAGGAGAAGAAACG
ACACGGGATGGATTGGGCACGGAGAACTGATATCACGGAACACAATTTGCTTTGACGCTGGTTGA
ACCCGTGATGCTAGAACGTGAGGCGAAACAATGGCCGGCTAGACATGTGTGTGGATAGATAGAGT
TGGCTAGAACGTTAGGCAAGGAAATGGCTAGATTCATCGACTTGCTCAAAACCGGGAAAAGGGCG
GGGGTTGACGCAATGAACCTGGTACGGTATGGTACGATATGGTACAGGGACGAATGATCGACACT
GTGAATCACACCCGCCTGATGATATATTATCAATACTGATAGCTTCTCGATTGCTTATCGGATAT
ATCAACTGATCTTAGCTCCTAGCAACACACTTTTGACCTGAAGAAACAGCAAGCACACAATGAAT
GAACTAGGGACGTTCACCGATAGGACACAGGAAATCTCAAGCGCA
Right flanking sequence: Indices 507076 -- 507575
AGACGCAGTTCACAACACGGACGGAACACAGTATCTACCTGGACTTACAACATGATGATCAATAA
GAATATTCTTATCTTACTCACACCAAAAAGAAGACCTAGGGAGGGAGATACATGTTACATACGTT
GCACTAGATTTGGGTTTGAGATTTGATCAATTGAGATTGATGAGAACTGTCCGTTGATCTCTGGC
TAACCTACTACGATCTACTTGATGGCAGGCTTGCTTGCTTGATTTGATTGCGGGCTGGCCGTGGA
AAGGTAAGGGACGTGTTGTGACTCGCCCGAGGTAGGAAGGTCAGGCACTTTCCTTGGGGCAACGC
CACCTCAGAAAGTGTATGTAAGGCTAGTAGTACCATTGCATAGACAACCTTACTCTATAGTGATT
AGAGGTCTCCTGAGGCTTGTAGTAGAAGCTAGTTAGTAGTGCCAGTGTCCATGCAGCTAATGAAT
GCAATGACTAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGG
Found at i:509172 original size:20 final size:20
Alignment explanation
Indices: 509147--509186 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
509137 CAAAATGAAG
509147 CAAGATGGTGTATTGTCCCT
1 CAAGATGGTGTATTGTCCCT
509167 CAAGATGGTGTATTGTCCCT
1 CAAGATGGTGTATTGTCCCT
509187 ATGGTTGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (20 bp):
CAAGATGGTGTATTGTCCCT
Left flanking sequence: Indices 508647 -- 509146
TTTCCTCGACCAAGTTGATCATGGGATTGGTTGTAAACAAGGACGAAATCACCTTCGCAGAATGA
GTGAGGGTGGATGTGACGGTCATAGTGGGCTTTCAAATGTTGTTTGGTAGCTTCAATGTGATAGA
GGGTAGCACGATGGTCCTTGTCTGCTTGTTTCAAGGCGATCAAGCATTGTTCCAGAGCGGAGGTG
TTTGGAAAAAGCTCGACTGCTAGATGCAAGGAAACCCAACAAGGCTAATGGGCTCCAAGGTACGA
GCACAACGCCGTCGATGTGAAAGATGTGCCGAAGTTTCACATTGACAAGGTTCGTCCAATCGGGA
CCCAATGATGAGAGATCCTGTCGAATGCGAGATGACTGCCAATGAGGCTAACGATCATCAAGGCA
CTCTACTTCTAGAATAATCCTCAGATAATGTGTCGGAGTCTATGATAAAAGCTCTGATAGAATCA
AGTCAATTATATAATCCCTTCAACTACTGTAAAGCCAAAATGAAG
Right flanking sequence: Indices 509187 -- 509686
ATGGTTGGATGAGGTGCTGACCAACAAGACTTTACTTAGGCTTGACTCAATGAAGATGATGAGAC
GGGACATTACCCAACCAGTAAGGTCCTGGCCCTTTATCTATTCGATGACCCAAAGCCCCTCAAAG
CGAGGACCGGTAGGGGCTCGACTGATAAGGAGAGGAAAGACAACCTCCCTTTAGAAAGTCATGAG
GTCCGTCAGGGTGCGTAAGCACGCTCGACTAATAAGGCCGCCATCGGCTCGACTGATAAGGAGAG
GAAATAACTCGTAAGTGAAGGCAAGAGTCAGTCAGAGTCAGGAGCGTTAGCGAGACCCTTACCTA
TCACTTATTAACCGACTATCTTCGCAGATACTAAAATATGATTTCTACTAATGATGCCCCTCATC
CGGAGTGGTGCGCGTAGCCAAGACAAGGAACAACTCGAGCGTTAGCGAGACTATCACTTTCCTTA
CTATTACGTATGATGCCCCTCATCCGGGATGGTGGGCGTAGCCAA
Found at i:511488 original size:18 final size:19
Alignment explanation
Indices: 511465--511502 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
511455 AATGACGTAT
511465 ATAATGA-CGT-AGATAATG
1 ATAATGATCGTCAGA-AATG
511483 ATAATGATCGTCAGAAATG
1 ATAATGATCGTCAGAAATG
511502 A
1 A
511503 CGTATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 8 0.44
20 3 0.17
ACGTcount: A:0.45, C:0.08, G:0.21, T:0.26
Consensus pattern (19 bp):
ATAATGATCGTCAGAAATG
Left flanking sequence: Indices 510965 -- 511464
CTCAGCTAGTTTCATTCCACAGGAAGGGAGTTCATGAAGGCCTACTGAGGGTGAATGCAAGGTCC
CGGAGGGGCTTGCGCTTCCTAGTGCAAGGACCCTCCGCCCGGTAAAGCAAACTAATTAGCTATAG
CCGGAGGAAATAACTTGTCGGCAGGACCACCCACGGCAGGAAAGAAAGAACAATCGGGGGTGAAG
GATGGGCAGGAGAGGAAGGAGATGGTGATATCTCCTCACTATCCTATTGCGGTGGGTGGGAGGGA
AGTTAGTTAGGTCGGACAGTACTCAACAAGAGAGAAAGTTAGGATTGATCAATCCATCCTCTTGC
CTCCCGGCAGCTAATACACTCTATTCTCCTTGCCCTCACCCCCTGTAGGCCTTCACCCCCGGAGT
GAAATACAGATAACATCAATCCATCACCGAGTTCCATCCATCCAATAGAGTGATAACTCCTCCCA
ACCCCACTGAGAAGAAATAATAGCTAGTCGACCGGAATGACGTAT
Right flanking sequence: Indices 511503 -- 512002
CGTATATAATTGAGATGGCCAATATAGTGAGGGTGCGTTAGCACACTCGACTGTCCAGGCCGCCA
TCGATTGTGCGGGTCTAAAAAGAGTGGATCTTCGTGGAGATGCATCATCCGGAAAAGGTGAGGAA
CGAGCACCCCATTCAATAGAGGGGATCGGATCTCACCAATGATCAGTGGGGGCATTCGGGCTAAG
CTAAGCAGGTACCATAGTTTGTTTGAACCACGACGCCTATCTATCAGTCAGGCAGGTTGTAGTAA
GCCTGGCTCTGTTTCTCACACTATGGTGGGTGGAGGAGGGTTACCCAAGGGTTAAGATCCGGGAG
TGTGAGCAGTACGAGCCGAGAGGCTCCCATACTGTTTGGAGGGCAGGGGGCAGAGATGCCAAACC
TGACCCCTATCTATCGCCGTAGAAGCTGTTTCTTTGAAAGATTATGTTTCTCGGGTATCCAATAA
ATTCATCCAAAGGCCCCCGAATAAGAAGGCCCCCACCTAACATAC
Found at i:512757 original size:45 final size:45
Alignment explanation
Indices: 512661--512757 Score: 106
Period size: 45 Copynumber: 2.2 Consensus size: 45
512651 CTTCTCTGGC
* * * *
512661 CAAGTAGTTCCATTAACCCATAGTCTAGTTATCAGCCAATCTGTC
1 CAAGTAGTTCCATGAACCCATAGTCTAGTTATAAGCCAATCAGTA
* * **
512706 CTAGTAGTT-CACTGAACCTATAGTCTTTTTATAAGCCAATCAGTA
1 CAAGTAGTTCCA-TGAACCCATAGTCTAGTTATAAGCCAATCAGTA
512751 CAAGTAG
1 CAAGTAG
512758 AAGTTGGTCT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
44 2 0.05
45 40 0.95
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (45 bp):
CAAGTAGTTCCATGAACCCATAGTCTAGTTATAAGCCAATCAGTA
Left flanking sequence: Indices 512161 -- 512660
GAGAGGGAAGGAGACGGCCACCTGGAAGGACTACCACCCATAGAATATAGACCTTAAGTGTTTCA
AGTAGGGATAGAATACAGGCAATGAGAACAAGCAATAGAGTTTCTTCTCGATTACCAGAAGTACC
AGTTTTGAGGACTCGTTGGAGGGGAAATAAGTAAAGTAACCATAATAGAATACAGGTAATCAATA
AGTGTTTCAAGTAGGACTGGCCAAATAGATATTGAAATACGCATACGTCCGAGGGAAGCTAGTGA
TCCACCCTCAACCGGAATTCTATGATCCACTAACGCGTGTAGAACCATTGACTACCGCTTCCAAC
CATAGTCCAAGGTTCTGTCTAAGGCAGCGCCCCTATCTGAAGAAGAAATAGATGATATGAAGCCC
GGACCTCGTACTTCTATTGGGCCTATTATCCCTCCCGCTACTCACTGGGGCTGCTAAACGAGCCA
AGCTAGTAGTTCTAGTCCAACCAATTAGTCTACTTCTTCTCTGGC
Right flanking sequence: Indices 512758 -- 513257
AAGTTGGTCTAAGCAGTCCCACCTAATAGTCTAGTTCTTCTCTTTGAACCGTACCTCGGATGTCT
AATCCAACTGGTCTACCCGAACCATACCTGTGCGAAGCTGAAGCTCGTCTACCCGAACCTTAGTC
ACGGAAACCTATTGCTCGCTAACCCTACCTACCATTCAGTTGTCCAAGCAACCCTGTTACCAAAA
GTTGTCTAACCAAAGTCTAACCAACCCACCAAACCTGTGCGAAGCTCAACCTCGTCTACCCGAAC
CATACACAGCTCACTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAGCTGAACCTCGTCTACC
CGAACCATACACAGCTCACTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAGCTGAACCTCGT
CTACCCGAACCATGCTGTCCAACCTAATAGTCTAGTTCTAATCAGTGCAGCCCCAGTAGTTCTCA
TCCAAGCTAGTGACCTAAACCTACCAAGCAAATCTATTAGTGTAG
Found at i:513071 original size:36 final size:36
Alignment explanation
Indices: 513031--513144 Score: 101
Period size: 36 Copynumber: 3.2 Consensus size: 36
513021 ACACAGCTCA
513031 CTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAG
1 CTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAG
* ** * * ** **
513067 CTGAACC--TCGTCTAC-CCGAACCATACACAGCTCA-
1 CTGAACCTATTGTC-ACTGGGAA-GAGACAGTGCGAAG
513101 CTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAG
1 CTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAG
513137 CTGAACCT
1 CTGAACCT
513145 CGTCTACCCG
Statistics
Matches: 54, Mismatches: 18, Indels: 12
0.64 0.21 0.14
Matches are distributed among these distances:
34 14 0.26
35 18 0.33
36 22 0.41
ACGTcount: A:0.30, C:0.27, G:0.24, T:0.19
Consensus pattern (36 bp):
CTGAACCTATTGTCACTGGGAAGAGACAGTGCGAAG
Left flanking sequence: Indices 512531 -- 513030
AAATAGATGATATGAAGCCCGGACCTCGTACTTCTATTGGGCCTATTATCCCTCCCGCTACTCAC
TGGGGCTGCTAAACGAGCCAAGCTAGTAGTTCTAGTCCAACCAATTAGTCTACTTCTTCTCTGGC
CAAGTAGTTCCATTAACCCATAGTCTAGTTATCAGCCAATCTGTCCTAGTAGTTCACTGAACCTA
TAGTCTTTTTATAAGCCAATCAGTACAAGTAGAAGTTGGTCTAAGCAGTCCCACCTAATAGTCTA
GTTCTTCTCTTTGAACCGTACCTCGGATGTCTAATCCAACTGGTCTACCCGAACCATACCTGTGC
GAAGCTGAAGCTCGTCTACCCGAACCTTAGTCACGGAAACCTATTGCTCGCTAACCCTACCTACC
ATTCAGTTGTCCAAGCAACCCTGTTACCAAAAGTTGTCTAACCAAAGTCTAACCAACCCACCAAA
CCTGTGCGAAGCTCAACCTCGTCTACCCGAACCATACACAGCTCA
Right flanking sequence: Indices 513145 -- 513644
CGTCTACCCGAACCATGCTGTCCAACCTAATAGTCTAGTTCTAATCAGTGCAGCCCCAGTAGTTC
TCATCCAAGCTAGTGACCTAAACCTACCAAGCAAATCTATTAGTGTAGTTATCAGCAGTTACCTA
AAGCAAACAACCAAATAGAATAGTGCAGGTATTAGCAGGCCAAGCGAGTAGTTCTCATCCAAGTG
ACCGAACCCTACCAAATAGTCTAGTTCTAATCTGTCCAAGCAAGTAGTTATAACCAAGCTAGTCT
CACCAAGCATGGTGGGAAGCTAGATCTATATATGCATCTGCCATCTAGGTATATATATAGTCATC
GATAGATATATAAAATAGAATATGGGCTTGTTAAGGACACTTTTTATTGACACTGACCCTTACTA
GTTCGTGTGGCAGAGAGGTTGTTTGTTGCCCACGCCCTAACTCAATGGGGTGGGGCATGCTGAGG
ACTACTTCCCTTGATTCCAGCCATACCCAGTAAACGATATATACC
Found at i:513102 original size:70 final size:70
Alignment explanation
Indices: 512989--513160 Score: 335
Period size: 70 Copynumber: 2.5 Consensus size: 70
512979 CACCAAACCT
*
512989 GTGCGAAGCTCAACCTCGTCTACCCGAACCATACACAGCTCACTGAACCTATTGTCACTGGGAAG
1 GTGCGAAGCTGAACCTCGTCTACCCGAACCATACACAGCTCACTGAACCTATTGTCACTGGGAAG
513054 AGACA
66 AGACA
513059 GTGCGAAGCTGAACCTCGTCTACCCGAACCATACACAGCTCACTGAACCTATTGTCACTGGGAAG
1 GTGCGAAGCTGAACCTCGTCTACCCGAACCATACACAGCTCACTGAACCTATTGTCACTGGGAAG
513124 AGACA
66 AGACA
513129 GTGCGAAGCTGAACCTCGTCTACCCGAACCAT
1 GTGCGAAGCTGAACCTCGTCTACCCGAACCAT
513161 GCTGTCCAAC
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 101 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (70 bp):
GTGCGAAGCTGAACCTCGTCTACCCGAACCATACACAGCTCACTGAACCTATTGTCACTGGGAAG
AGACA
Left flanking sequence: Indices 512489 -- 512988
AGTCCAAGGTTCTGTCTAAGGCAGCGCCCCTATCTGAAGAAGAAATAGATGATATGAAGCCCGGA
CCTCGTACTTCTATTGGGCCTATTATCCCTCCCGCTACTCACTGGGGCTGCTAAACGAGCCAAGC
TAGTAGTTCTAGTCCAACCAATTAGTCTACTTCTTCTCTGGCCAAGTAGTTCCATTAACCCATAG
TCTAGTTATCAGCCAATCTGTCCTAGTAGTTCACTGAACCTATAGTCTTTTTATAAGCCAATCAG
TACAAGTAGAAGTTGGTCTAAGCAGTCCCACCTAATAGTCTAGTTCTTCTCTTTGAACCGTACCT
CGGATGTCTAATCCAACTGGTCTACCCGAACCATACCTGTGCGAAGCTGAAGCTCGTCTACCCGA
ACCTTAGTCACGGAAACCTATTGCTCGCTAACCCTACCTACCATTCAGTTGTCCAAGCAACCCTG
TTACCAAAAGTTGTCTAACCAAAGTCTAACCAACCCACCAAACCT
Right flanking sequence: Indices 513161 -- 513660
GCTGTCCAACCTAATAGTCTAGTTCTAATCAGTGCAGCCCCAGTAGTTCTCATCCAAGCTAGTGA
CCTAAACCTACCAAGCAAATCTATTAGTGTAGTTATCAGCAGTTACCTAAAGCAAACAACCAAAT
AGAATAGTGCAGGTATTAGCAGGCCAAGCGAGTAGTTCTCATCCAAGTGACCGAACCCTACCAAA
TAGTCTAGTTCTAATCTGTCCAAGCAAGTAGTTATAACCAAGCTAGTCTCACCAAGCATGGTGGG
AAGCTAGATCTATATATGCATCTGCCATCTAGGTATATATATAGTCATCGATAGATATATAAAAT
AGAATATGGGCTTGTTAAGGACACTTTTTATTGACACTGACCCTTACTAGTTCGTGTGGCAGAGA
GGTTGTTTGTTGCCCACGCCCTAACTCAATGGGGTGGGGCATGCTGAGGACTACTTCCCTTGATT
CCAGCCATACCCAGTAAACGATATATACCTGGTATGACATATTTA
Found at i:513108 original size:34 final size:34
Alignment explanation
Indices: 513000--513108 Score: 87
Period size: 34 Copynumber: 3.1 Consensus size: 34
512990 TGCGAAGCTC
513000 AACCTCGTCTACCCGAACCATACACAGCTCACTG
1 AACCTCGTCTACCCGAACCATACACAGCTCACTG
* ** * * ** **
513034 AACCTATTGTC-ACTGGGAA-GAGACAGTGCGAAGCTG
1 AACC--TCGTCTAC-CCGAACCATACACAGCTCA-CTG
513070 AACCTCGTCTACCCGAACCATACACAGCTCACTG
1 AACCTCGTCTACCCGAACCATACACAGCTCACTG
513104 AACCT
1 AACCT
513109 ATTGTCACTG
Statistics
Matches: 51, Mismatches: 18, Indels: 12
0.63 0.22 0.15
Matches are distributed among these distances:
34 19 0.37
35 18 0.35
36 14 0.27
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.18
Consensus pattern (34 bp):
AACCTCGTCTACCCGAACCATACACAGCTCACTG
Left flanking sequence: Indices 512500 -- 512999
CTGTCTAAGGCAGCGCCCCTATCTGAAGAAGAAATAGATGATATGAAGCCCGGACCTCGTACTTC
TATTGGGCCTATTATCCCTCCCGCTACTCACTGGGGCTGCTAAACGAGCCAAGCTAGTAGTTCTA
GTCCAACCAATTAGTCTACTTCTTCTCTGGCCAAGTAGTTCCATTAACCCATAGTCTAGTTATCA
GCCAATCTGTCCTAGTAGTTCACTGAACCTATAGTCTTTTTATAAGCCAATCAGTACAAGTAGAA
GTTGGTCTAAGCAGTCCCACCTAATAGTCTAGTTCTTCTCTTTGAACCGTACCTCGGATGTCTAA
TCCAACTGGTCTACCCGAACCATACCTGTGCGAAGCTGAAGCTCGTCTACCCGAACCTTAGTCAC
GGAAACCTATTGCTCGCTAACCCTACCTACCATTCAGTTGTCCAAGCAACCCTGTTACCAAAAGT
TGTCTAACCAAAGTCTAACCAACCCACCAAACCTGTGCGAAGCTC
Right flanking sequence: Indices 513109 -- 513608
ATTGTCACTGGGAAGAGACAGTGCGAAGCTGAACCTCGTCTACCCGAACCATGCTGTCCAACCTA
ATAGTCTAGTTCTAATCAGTGCAGCCCCAGTAGTTCTCATCCAAGCTAGTGACCTAAACCTACCA
AGCAAATCTATTAGTGTAGTTATCAGCAGTTACCTAAAGCAAACAACCAAATAGAATAGTGCAGG
TATTAGCAGGCCAAGCGAGTAGTTCTCATCCAAGTGACCGAACCCTACCAAATAGTCTAGTTCTA
ATCTGTCCAAGCAAGTAGTTATAACCAAGCTAGTCTCACCAAGCATGGTGGGAAGCTAGATCTAT
ATATGCATCTGCCATCTAGGTATATATATAGTCATCGATAGATATATAAAATAGAATATGGGCTT
GTTAAGGACACTTTTTATTGACACTGACCCTTACTAGTTCGTGTGGCAGAGAGGTTGTTTGTTGC
CCACGCCCTAACTCAATGGGGTGGGGCATGCTGAGGACTACTTCC
Found at i:513774 original size:26 final size:26
Alignment explanation
Indices: 513745--513824 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 26
513735 GATAGCAGTG
*
513745 GATAGTGCGGTCTAGAGCGCTGGGCA
1 GATAGTGCGGTCTAGAGAGCTGGGCA
** ** * *
513771 GATAACGCGGTGGAGATAGCT--GCG
1 GATAGTGCGGTCTAGAGAGCTGGGCA
513795 GATAGTGCGGTCTAGAGAGCTGGGCA
1 GATAGTGCGGTCTAGAGAGCTGGGCA
513821 GATA
1 GATA
513825 AGCCTAATAG
Statistics
Matches: 39, Mismatches: 13, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
24 18 0.46
26 21 0.54
ACGTcount: A:0.24, C:0.16, G:0.41, T:0.19
Consensus pattern (26 bp):
GATAGTGCGGTCTAGAGAGCTGGGCA
Left flanking sequence: Indices 513245 -- 513744
TCTATTAGTGTAGTTATCAGCAGTTACCTAAAGCAAACAACCAAATAGAATAGTGCAGGTATTAG
CAGGCCAAGCGAGTAGTTCTCATCCAAGTGACCGAACCCTACCAAATAGTCTAGTTCTAATCTGT
CCAAGCAAGTAGTTATAACCAAGCTAGTCTCACCAAGCATGGTGGGAAGCTAGATCTATATATGC
ATCTGCCATCTAGGTATATATATAGTCATCGATAGATATATAAAATAGAATATGGGCTTGTTAAG
GACACTTTTTATTGACACTGACCCTTACTAGTTCGTGTGGCAGAGAGGTTGTTTGTTGCCCACGC
CCTAACTCAATGGGGTGGGGCATGCTGAGGACTACTTCCCTTGATTCCAGCCATACCCAGTAAAC
GATATATACCTGGTATGACATATTTACATATATAACCTACACACTAATGCATTGAATGAAAGGAT
TGACTTGAACCCGCCAGTGATACGGGACATACATAGATAGCAGTG
Right flanking sequence: Indices 513825 -- 514324
AGCCTAATAGCGGGGTGGACCTTATACGGGGGTTAGCTAGGAAGAGGTATACGTGGTATAGGTAA
TGCGGGGTATACCTAGCCAGTTTCTCTCTTGGTAAAGCCTATCCTGGCAGTCCTGGGGTTACTGG
GTATACGTCTAAGTAAGAGCTTATACGAGGTATACTACCTATAACGTACTAGCTATACCAAACAG
GCCCTGATCGGGCATTTGATTATATAAAAACTAGCCTTTCAGAACGACACTTTCCTACTTATCAT
TGGGCAGTCTGCGGACCCTGACCTCTCAGTGTAATGAACATTGCGGGAATCTTATATTAGATCCT
TGCTTCTTGACTTGCTTCCTCTTTACCTAGCAGTGGCACGAACATTCTGGGAAGATCATAAAGCC
GTCTTGCTTCTTGACTTGCTTCCTCTTAGGGGCTTGGGCTCGCTTAGCAAACTTGGCTGGCTTAC
TCAACTGAACGGATGCCGAGTCTGAGTCTGGCTTTACTGACCTTG
Found at i:513815 original size:24 final size:24
Alignment explanation
Indices: 513744--513816 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
513734 AGATAGCAGT
*
513744 GGATAGTGCGGTCTAGAGCGCTGGGC
1 GGATAGTGCGGTCTAGAGAGCT--GC
* ** ** *
513770 AGATAACGCGGTGGAGATAGCTGC
1 GGATAGTGCGGTCTAGAGAGCTGC
513794 GGATAGTGCGGTCTAGAGAGCTG
1 GGATAGTGCGGTCTAGAGAGCTG
513817 GGCAGATAAG
Statistics
Matches: 34, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
24 19 0.56
26 15 0.44
ACGTcount: A:0.22, C:0.16, G:0.42, T:0.19
Consensus pattern (24 bp):
GGATAGTGCGGTCTAGAGAGCTGC
Left flanking sequence: Indices 513244 -- 513743
ATCTATTAGTGTAGTTATCAGCAGTTACCTAAAGCAAACAACCAAATAGAATAGTGCAGGTATTA
GCAGGCCAAGCGAGTAGTTCTCATCCAAGTGACCGAACCCTACCAAATAGTCTAGTTCTAATCTG
TCCAAGCAAGTAGTTATAACCAAGCTAGTCTCACCAAGCATGGTGGGAAGCTAGATCTATATATG
CATCTGCCATCTAGGTATATATATAGTCATCGATAGATATATAAAATAGAATATGGGCTTGTTAA
GGACACTTTTTATTGACACTGACCCTTACTAGTTCGTGTGGCAGAGAGGTTGTTTGTTGCCCACG
CCCTAACTCAATGGGGTGGGGCATGCTGAGGACTACTTCCCTTGATTCCAGCCATACCCAGTAAA
CGATATATACCTGGTATGACATATTTACATATATAACCTACACACTAATGCATTGAATGAAAGGA
TTGACTTGAACCCGCCAGTGATACGGGACATACATAGATAGCAGT
Right flanking sequence: Indices 513817 -- 514316
GGCAGATAAGCCTAATAGCGGGGTGGACCTTATACGGGGGTTAGCTAGGAAGAGGTATACGTGGT
ATAGGTAATGCGGGGTATACCTAGCCAGTTTCTCTCTTGGTAAAGCCTATCCTGGCAGTCCTGGG
GTTACTGGGTATACGTCTAAGTAAGAGCTTATACGAGGTATACTACCTATAACGTACTAGCTATA
CCAAACAGGCCCTGATCGGGCATTTGATTATATAAAAACTAGCCTTTCAGAACGACACTTTCCTA
CTTATCATTGGGCAGTCTGCGGACCCTGACCTCTCAGTGTAATGAACATTGCGGGAATCTTATAT
TAGATCCTTGCTTCTTGACTTGCTTCCTCTTTACCTAGCAGTGGCACGAACATTCTGGGAAGATC
ATAAAGCCGTCTTGCTTCTTGACTTGCTTCCTCTTAGGGGCTTGGGCTCGCTTAGCAAACTTGGC
TGGCTTACTCAACTGAACGGATGCCGAGTCTGAGTCTGGCTTTAC
Found at i:517049 original size:17 final size:19
Alignment explanation
Indices: 517017--517051 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
517007 CAGTGTATGA
517017 AACCTTATGAAATAGGTAC
1 AACCTTATGAAATAGGTAC
517036 AACCTTA-G-AATAGGTA
1 AACCTTATGAAATAGGTA
517052 ACTGCTTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (19 bp):
AACCTTATGAAATAGGTAC
Left flanking sequence: Indices 516517 -- 517016
CTACCGATACTAAATACTTTATACTCTAGACGTTCAGTTCATCAGTCCAGATACGGTAAGTCTAT
AGACGTGAAAGCCAGAACAACCCATCCCGAAAGTGTTTGTGTGAGGAGGTGCACCGATTACCCTA
ACAACTTATCCATGCATGACAAGGTGCCAACTTCAAAGAATGAGAGATGTGAACCAATGGATGGA
TAGGAGTTACAGCAGACACGTTCTTTTCAATCCATTAGATACAGATGTTCTGTTCAGTTCATATA
CGTGAAATCTATATACATGAAATAATTACCCCATCCCGACAGAGTGAGTGAGGTAGGTAGGTGCA
CCTATGAAGAGTGATTGATTGAAAGAAATCAAATGGACTAAAGCTAGATCACCACGGAAGTCATA
GTCATGGCTTGAAAACGGGAAACAAGCGTAGTGCCAGGTCAAGTAGTGGAAATTACGTTTACTAG
TGTAATTAGAGCTTAGAGTCTCATGCAAGTGGTTACAGTGTATGA
Right flanking sequence: Indices 517052 -- 517551
ACTGCTTAGGCTTAATCAATTAGAAAGAAAATAGATCATTAATGGAACAATCACATCCGGAGTGC
AGGCTGGCTTGACCAAACCGGCTTGAACCAACCTACTAAGGCTAATCACTTACCCTACCGGCTTC
TATTACGCTTGAACTAGAAGTCCGTATGGATACAGAGAGAGTCCAGTCATTATCGCACTACAGAG
AGGCTAAGCACAGAGAGTAGAGCTAGGAGTTAGCTTATGAACTCAAGCTAAGCACCATATGGATT
CCACTGGTTGTTTCTTTATATGGAATGGGTGCCGTAGATATGCGATCATCATATAAAATCTATTT
GGATTTTGGATTATTCCCCACTGACTAACCTCACACTCACTAACCTTACTGGGCATGTGGTAACC
TGAATAGCTGCTGCTATAGTACCTTCTCCCTTAGGTCTGGTCTACATGTCTGGTCTGGCGTGCCC
TACCACCCTACCCTATGCGGTTGTGGAACCTCAGCAAGCAGCATT
Found at i:518769 original size:15 final size:15
Alignment explanation
Indices: 518749--518779 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
518739 TGTCTGCTAG
518749 TGGATCCCCGGCTGC
1 TGGATCCCCGGCTGC
*
518764 TGGATCCCTGGCTGC
1 TGGATCCCCGGCTGC
518779 T
1 T
518780 TAGCTTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.35, G:0.32, T:0.26
Consensus pattern (15 bp):
TGGATCCCCGGCTGC
Left flanking sequence: Indices 518249 -- 518748
GGACAAGCGGGTCAACCCCCTTAGGAGAAGTCTTTAGGAAATAGTCTCCATATTCTCTAAGTAAT
TCTACCGTAACTGGTATTTATCCAATCACACTCGGATCTTATTCATAGCAAATAGCCATGAAGCT
AACTACCCAGATTTCCCATAAAGACGTTTACACCTGGACTAGCCATATCCACATTTTCACGTCTG
ATATCGCCATATCTACGTCCTTGCTAAGAATCAATCTAGTCTTCCCTTTGCCCCATAGGTAGAAC
CTTCGCCAGTCATATCTACGTGGCTATATATGATGTCACATAGATACGTGGACCACTTGGATTTG
CCATCTCGATATCGCCATATCTACTACTACTAAGCCAGCAGGTTGCCAATGCCAGTGCTGGGCCT
CACTCAGAGACTACTCCACTTGGACTACTTGCTCGGCTGGGCTACTTGAGATAAACTATGTAGCA
TGGAGAAGTTTTCACCTCTGATATTTGCCTATCTATGTCTGCTAG
Right flanking sequence: Indices 518780 -- 519279
TAGCTTGGATCTGGTCTGCCAACTTGAACTCCACGGAGGAAACATAGCCCTCGACCCTCTCCTCG
AAACTAGACCTCGAAACAACCGTGGCCCTACACTTCCACCTCGATCCTCAACCCTTGACCTATAA
CTTGACATCACTACGCTGCAGAACTTTCCTACCTCAACTTGATGGGCCATGCATTATATATGAGG
CATCCGTTGAGGATAGATCAGGCGCCATACACATAGTTTCATTCACGCTAGGATGGTTTTGACGG
CCAGGGAAGTAGGTTGGGCTTGGAGATATATTGATTGATTGGACTTGATTGATTCACTTTAGAAA
AGATTTTGAGAATAGCGTTCCCACCTGCCCCATCTTCCGAGAATAGTTTGACACCAAACTCCCCA
TAGCACGTCCCAATAAACTAACCATCTAACGTCCCAATATTAGGCGACAAGAGATGCGGGGTCCA
CCGGATCGACCAATGAGTGACAGCAGACCCAACCAGGAGACCTAA
Found at i:519315 original size:13 final size:13
Alignment explanation
Indices: 519255--519308 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
519245 CAATGAGTGA
519255 CAGCAGACCCAAC
1 CAGCAGACCCAAC
* * *
519268 CAGGAGACCTAAA
1 CAGCAGACCCAAC
* * *
519281 CTGAAGACCCAGC
1 CAGCAGACCCAAC
519294 CAGCAGACCCAAC
1 CAGCAGACCCAAC
519307 CA
1 CA
519309 AGAGACCTTG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.39, C:0.39, G:0.19, T:0.04
Consensus pattern (13 bp):
CAGCAGACCCAAC
Left flanking sequence: Indices 518755 -- 519254
CCCGGCTGCTGGATCCCTGGCTGCTTAGCTTGGATCTGGTCTGCCAACTTGAACTCCACGGAGGA
AACATAGCCCTCGACCCTCTCCTCGAAACTAGACCTCGAAACAACCGTGGCCCTACACTTCCACC
TCGATCCTCAACCCTTGACCTATAACTTGACATCACTACGCTGCAGAACTTTCCTACCTCAACTT
GATGGGCCATGCATTATATATGAGGCATCCGTTGAGGATAGATCAGGCGCCATACACATAGTTTC
ATTCACGCTAGGATGGTTTTGACGGCCAGGGAAGTAGGTTGGGCTTGGAGATATATTGATTGATT
GGACTTGATTGATTCACTTTAGAAAAGATTTTGAGAATAGCGTTCCCACCTGCCCCATCTTCCGA
GAATAGTTTGACACCAAACTCCCCATAGCACGTCCCAATAAACTAACCATCTAACGTCCCAATAT
TAGGCGACAAGAGATGCGGGGTCCACCGGATCGACCAATGAGTGA
Right flanking sequence: Indices 519309 -- 519808
AGAGACCTTGCCATAGCTGCCAGACCTACAACTCCTACGCCAAACTCCAAAATCCAACCTTGACC
TCCTAACTCCCAAACTCCAAACTCAAAACTACTACCGAACAAGTTTTTCGATAGGGGTGGCCCCA
TGGATATTCTCATATATAAGAAAGTTGACACACCTAGAAGGGAACCTCAATTTCATGGATACGCT
TATATACCACCTGAAGAACACCTAGTTGGGGACAGGCACTCTGTTTGGGTGGACCAGATCTTCAA
AAAGATTCTCATTCGCCATTTTCCCATTTTGGATAAACCTCGTTTTTCTCTAGATACAGGAAAAG
AACATGGTTGTTACTTACAAGCATTTAGACCAAGTTCCACTGAACTGATTCGATTGGATTTTCTG
AACTAATTAGTCTTCTTAGGTTGGCTGGAAGGAGTGGCCAAAGGTGACTTATTAGTCTTCTGGGG
GAGGACGCTTCACAAGCTACTGATGAGTATTACGGTGAGGCAAGT
Found at i:520444 original size:14 final size:14
Alignment explanation
Indices: 520425--520451 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
520415 AGAACAGCAG
520425 CTGTTGAAAGAGCC
1 CTGTTGAAAGAGCC
520439 CTGTTGAAAGAGC
1 CTGTTGAAAGAGC
520452 TTGGTTACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22
Consensus pattern (14 bp):
CTGTTGAAAGAGCC
Left flanking sequence: Indices 519925 -- 520424
ATGGATCTTGGCCTGGTGGGAGTAGGTGTGGTGGGATTGGTGTTCTTGGTGGGACTGGACTAGTT
GGACAGGCGGGTGTAGTTCATCCCTGTTGGTGTGCTTAGTGTGTTGGCAGTTGAGAAGGGGTATA
TGGAAAAAGAAAATCAATCTAGCGAGCAAGCAAGAAGCACATAAGTAATCTCATCCCGCAATATC
TTTCATCTCCAAGCCCCGCCCCGGTTCAACAACAAGCCGATGGGTTCGACCAGCTCACCAGCCAT
CCGCCCGCCATTCTACCTCTCGCGCATCCCATCCACGCCATTCTCGCTTTCGCGACTGCCCCATC
CGCTTTATTGCATTATCGCACTCCCCCCCCCTTTTTCATTCTCCATTTATCCCATTCACGCTTCC
CTATTCACCCAAATTACCGCATTCCCAATTCAACCCATTCTACCACTTTGAAAAGAAGGACCAAG
AGGGCAAAACAGGATATCCTTTCGAACCTTAGCTTAGAACAGCAG
Right flanking sequence: Indices 520452 -- 520951
TTGGTTACACAAATTAGGTTACTTGATACGATGATCTCGATGATGGATTATCTCTATGATGGATG
ATGATCGCTACCGCTTGCCCCACGAGGAGGCGGAGGGAGGAGGATGAGTCAATTCACCAAGGGAG
GGCCTATCTCACACCTTGAAACTCACCTTGAACCTTCTGCCTTAGTCTTAAACCTTTCACCTCTA
GCCTCGAACCTATCAATTGGGCCCTTAGCTTGAGGATTGGGGTTTTATGGGAGCTAAGGTCGCTA
GCGTTCTAAACCCGAGAGTGCCGAACTCCCACTCGACTTCGGCTCCGGGGCTGATTAGAGCCGTT
TTCCCGCCGAGCTGGGCGGAATGAATGACCAGCAGCCACTGAATGACTGGCCCACTTCTCTTCTT
TATTGGCAGCGAAGAATCACCAGCAGCCACTTCTCTTACTGGCTCGGTCGAAAAGGGCAGAAAAG
CATAATGACTGCTATAATGAATGACGTAATTACGTATATAATTTA
Found at i:520510 original size:16 final size:16
Alignment explanation
Indices: 520485--520515 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
520475 TGATACGATG
520485 ATCTCGATGATGGATT
1 ATCTCGATGATGGATT
*
520501 ATCTCTATGATGGAT
1 ATCTCGATGATGGAT
520516 GATGATCGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (16 bp):
ATCTCGATGATGGATT
Left flanking sequence: Indices 519985 -- 520484
TAGTTGGACAGGCGGGTGTAGTTCATCCCTGTTGGTGTGCTTAGTGTGTTGGCAGTTGAGAAGGG
GTATATGGAAAAAGAAAATCAATCTAGCGAGCAAGCAAGAAGCACATAAGTAATCTCATCCCGCA
ATATCTTTCATCTCCAAGCCCCGCCCCGGTTCAACAACAAGCCGATGGGTTCGACCAGCTCACCA
GCCATCCGCCCGCCATTCTACCTCTCGCGCATCCCATCCACGCCATTCTCGCTTTCGCGACTGCC
CCATCCGCTTTATTGCATTATCGCACTCCCCCCCCCTTTTTCATTCTCCATTTATCCCATTCACG
CTTCCCTATTCACCCAAATTACCGCATTCCCAATTCAACCCATTCTACCACTTTGAAAAGAAGGA
CCAAGAGGGCAAAACAGGATATCCTTTCGAACCTTAGCTTAGAACAGCAGCTGTTGAAAGAGCCC
TGTTGAAAGAGCTTGGTTACACAAATTAGGTTACTTGATACGATG
Right flanking sequence: Indices 520516 -- 521015
GATGATCGCTACCGCTTGCCCCACGAGGAGGCGGAGGGAGGAGGATGAGTCAATTCACCAAGGGA
GGGCCTATCTCACACCTTGAAACTCACCTTGAACCTTCTGCCTTAGTCTTAAACCTTTCACCTCT
AGCCTCGAACCTATCAATTGGGCCCTTAGCTTGAGGATTGGGGTTTTATGGGAGCTAAGGTCGCT
AGCGTTCTAAACCCGAGAGTGCCGAACTCCCACTCGACTTCGGCTCCGGGGCTGATTAGAGCCGT
TTTCCCGCCGAGCTGGGCGGAATGAATGACCAGCAGCCACTGAATGACTGGCCCACTTCTCTTCT
TTATTGGCAGCGAAGAATCACCAGCAGCCACTTCTCTTACTGGCTCGGTCGAAAAGGGCAGAAAA
GCATAATGACTGCTATAATGAATGACGTAATTACGTATATAATTTATGCATTGTCCGCTAAAGCG
CAATTCAATATATAAAGAATGAAAGCGCAATTCAATATATAAAGA
Found at i:520995 original size:27 final size:27
Alignment explanation
Indices: 520965--521020 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
520955 ATTGTCCGCT
520965 AAAGCGCAATTCAATATATAAAGAATG
1 AAAGCGCAATTCAATATATAAAGAATG
520992 AAAGCGCAATTCAATATATAAAGAATG
1 AAAGCGCAATTCAATATATAAAGAATG
521019 AA
1 AA
521021 TGCATTGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.21
Consensus pattern (27 bp):
AAAGCGCAATTCAATATATAAAGAATG
Left flanking sequence: Indices 520465 -- 520964
TTAGGTTACTTGATACGATGATCTCGATGATGGATTATCTCTATGATGGATGATGATCGCTACCG
CTTGCCCCACGAGGAGGCGGAGGGAGGAGGATGAGTCAATTCACCAAGGGAGGGCCTATCTCACA
CCTTGAAACTCACCTTGAACCTTCTGCCTTAGTCTTAAACCTTTCACCTCTAGCCTCGAACCTAT
CAATTGGGCCCTTAGCTTGAGGATTGGGGTTTTATGGGAGCTAAGGTCGCTAGCGTTCTAAACCC
GAGAGTGCCGAACTCCCACTCGACTTCGGCTCCGGGGCTGATTAGAGCCGTTTTCCCGCCGAGCT
GGGCGGAATGAATGACCAGCAGCCACTGAATGACTGGCCCACTTCTCTTCTTTATTGGCAGCGAA
GAATCACCAGCAGCCACTTCTCTTACTGGCTCGGTCGAAAAGGGCAGAAAAGCATAATGACTGCT
ATAATGAATGACGTAATTACGTATATAATTTATGCATTGTCCGCT
Right flanking sequence: Indices 521021 -- 521520
TGCATTGAGTACCCACTACTTTCTAATTATGCGATTATACGTGTGCGATTTTCAGACTTTTACCA
CCTGCACGTGATTGCTTTTTTTGACCTTGTACTTGACCCTTTTCCGTCCGCTTTCAGACCAATCA
ACAAATTCACCTCTCTCTTTATCCTACTAATCTAGCCCAGGCACAGCTATATCTCGGCACACAAG
TACTACACCGGGTTCCGCAGTCCTATACCCTTTAGTGATCCACACAGAAAAACCCACTCAATTTG
ACTACAAACTGGCACAAATCCCCTAACCAGCGGCACCCTAAGATCCCCCATCAATGCTTTCTTCC
AGCACAGATAATTCCAAAACACATTCCCCATAAAATCCACCGTCACTACTTCTGGACTCCTCGGG
TTATCAGAAAGTCTCAGCTTATTCCATTCTTTAGTCCTCAGTAGCTGGGTCTCGGCCTTATCCCC
TTTTGATGCCCCATCTCTATCCCTGTAGTCGGATAGCATGGTATG
Found at i:530841 original size:33 final size:33
Alignment explanation
Indices: 530799--530977 Score: 358
Period size: 33 Copynumber: 5.4 Consensus size: 33
530789 CGCATAAATG
530799 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
1 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
530832 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
1 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
530865 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
1 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
530898 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
1 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
530931 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
1 TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
530964 TCCTCTCCTTATCA
1 TCCTCTCCTTATCA
530978 TATCCTTCTA
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 146 1.00
ACGTcount: A:0.12, C:0.34, G:0.17, T:0.37
Consensus pattern (33 bp):
TCCTCTCCTTATCAGTCGAGCGTGCTTTTCGCA
Left flanking sequence: Indices 530299 -- 530798
GACAACCACTTAGACTCACCTAAACCAGCCAAAAAGCCAGATTGAACTAGTAACCTGCACCCAAA
CAAAACGTCAGGAGATTACGAAATTGCAGATAAGCTGGGATTGGAAAAGATACTGAGCAATATGA
TGGCTGGGGCTAGCACTGGCGCATTTACTGGCTATGGATCAAACGCTGGAATAAGCTCTTGAACT
ACTGATTGTTCAAACATCTGAAAAAAGTTCATTTTGATTTGCGAGTGGAAAGCATGAACAAAAGA
GTGATTGACTATAGGGTAAAAAGTGGGGCCCCAACCGGCGACCATCAGTTTGTGGATGAAATGCA
GTAGAGAACCTCACCCATATGATGGATGAGCGAGAAATCGATGGCGGCCTTATTAGTCGAGCGTG
CTTACGCACCCTGACGGACCTCCCACGTTACCTCACCCTTGATTTCTTCCCCTCAAAGAGCGCGT
AGTGTTGTGTCCTCTCCCTCCATTAGTCGGTCGAGCGCATAAATG
Right flanking sequence: Indices 530978 -- 531477
TATCCTTCTAGCGAGCGATTGAGGGAAGAATCTAGTGATAACCTGACCTAGCTAGATTGAGGGGA
ATAAAGAAAGGCGATAACCTTCTTCTCGTAGCGGTCGATCCATTGGGTTATTCCATTTGTTAAGA
AAAGAAACGAAAAAAAGGAAAACATCTTTTATTACTATGAAAAAGAACGATCCCAGATAGATGAA
AATCCAATTTCGGGTCATTCCTTGGTGAACATAATCTGCCATAATCTCTTCGATCCCCACATGAA
TATGCCGGAATAAATAGATATCTGGTAGAAAAGTGGAAAAAACTTTCGATATGATAATCAAAGGG
GGTGGGGAAGCAGCAGTAATTCTTCGGAAAAGCCCGGTTCTCTCTGTCCCCGAGCTTTCATTTCT
CAATCCACTTGTTCGTCTCTTCATAGACCTCCCCACCAATAGATAGGGACAAATGGGAATGACCG
AACCACGTCTACGGAATGCCGGTACCATGCAGCTGCTTCAAAGCC
Found at i:532873 original size:30 final size:30
Alignment explanation
Indices: 532839--532918 Score: 126
Period size: 30 Copynumber: 2.7 Consensus size: 30
532829 ATAAGCATCA
532839 AGGTACGTTAGTGACTCGACTGATAAGGAG
1 AGGTACGTTAGTGACTCGACTGATAAGGAG
532869 AGGTACGTTAGTGACTCGACTGATAAGGAG
1 AGGTACGTTAGTGACTCGACTGATAAGGAG
* *
532899 AGGAACTTTAGTTG-CTCGAC
1 AGGTACGTTAG-TGACTCGAC
532919 CGTTAGCCCC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 45 0.96
31 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (30 bp):
AGGTACGTTAGTGACTCGACTGATAAGGAG
Left flanking sequence: Indices 532339 -- 532838
CCTTTCATATCTTCCCGTCTCATTTTCACCCGGTAAGTACCTTTCCCCCTCCTTTCTCCCTTACG
AATAGGAAGGGATGGATGGTTCTTTCATTGATAAGAGTGTGACATATGAGGCGAAAATAATCGTT
GGTTTCACCGACGAACTACGTGGGCATTATACAGTGAAGTTTTTCGGTTCAACAAACACGGAATC
CATAATCTATCTACCTTTGATCCATATCTGGCTCTTTCTTCAAGTAGAAGCCTATGAAATAAAGT
AAGGTTCTCACTTACCGTACCTGTGTTTTCTCTTTCTTCTATCTCTAGTTACCGAAGTGATACGA
GTCAATATGGCAAACTTCGTCAAGCAAGAGACTTTGGAATGACTTTCCCGGCGTACACTTCTAAA
CATAAGTCCCCCTTTCACTGTAGCTATTAGGCCCTCATTCGGAAAGCAAGGGCCCTATATTATTT
AGGGGTCACTCACTCATTCATATGCCCCCCACCCAATAAGCATCA
Right flanking sequence: Indices 532919 -- 533418
CGTTAGCCCCCCCACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGACCTTTAGG
TGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCT
CGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGG
GGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAG
TAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAGGGAGAGG
ACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGT
GAGGATTTCTCGACTAAAAAGCCATAGATGGATAGATGGTGAAACGATCACAAGATGGATGAATG
AGTGAATTCATCCATCTTTGGTCATTCTATCTATATATGTCATTA
Found at i:532983 original size:24 final size:24
Alignment explanation
Indices: 532951--533021 Score: 126
Period size: 23 Copynumber: 3.0 Consensus size: 24
532941 GTAAACCCTA
532951 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCTTAAGG
*
532975 ACCTTTAGGTGCTCGACCAT-AGG
1 ACCTTTAGGTGCTCGACCTTAAGG
532998 ACCTTTAGGTGCTCGACCTTAAGG
1 ACCTTTAGGTGCTCGACCTTAAGG
533022 GAGAGGGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 22 0.50
24 22 0.50
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.28
Consensus pattern (24 bp):
ACCTTTAGGTGCTCGACCTTAAGG
Left flanking sequence: Indices 532451 -- 532950
GAGGCGAAAATAATCGTTGGTTTCACCGACGAACTACGTGGGCATTATACAGTGAAGTTTTTCGG
TTCAACAAACACGGAATCCATAATCTATCTACCTTTGATCCATATCTGGCTCTTTCTTCAAGTAG
AAGCCTATGAAATAAAGTAAGGTTCTCACTTACCGTACCTGTGTTTTCTCTTTCTTCTATCTCTA
GTTACCGAAGTGATACGAGTCAATATGGCAAACTTCGTCAAGCAAGAGACTTTGGAATGACTTTC
CCGGCGTACACTTCTAAACATAAGTCCCCCTTTCACTGTAGCTATTAGGCCCTCATTCGGAAAGC
AAGGGCCCTATATTATTTAGGGGTCACTCACTCATTCATATGCCCCCCACCCAATAAGCATCAAG
GTACGTTAGTGACTCGACTGATAAGGAGAGGTACGTTAGTGACTCGACTGATAAGGAGAGGAACT
TTAGTTGCTCGACCGTTAGCCCCCCCACCCAATAAGTAAACCCTA
Right flanking sequence: Indices 533022 -- 533521
GAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGA
CCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAG
GGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGT
TAAGGAGAGGGAGAGGAGAGGGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAGAGGA
CCGGTAGGGGCTCACCATTCCGATGGTGAGGATTTCTCGACTAAAAAGCCATAGATGGATAGATG
GTGAAACGATCACAAGATGGATGAATGAGTGAATTCATCCATCTTTGGTCATTCTATCTATATAT
GTCATTACGCTTTTTTTCTTTATGGGTGAGCAATAAATTACCTTCGCCCCTACACCAAGTAAGTA
ATTCAGGAGTGTAGCCGCTTGTCCGCATCGGGCAAGGTATAAAAA
Found at i:533235 original size:11 final size:11
Alignment explanation
Indices: 533219--533244 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
533209 TCGACTGTTA
533219 AGGAGAGGGAG
1 AGGAGAGGGAG
533230 AGGAGAGGGAG
1 AGGAGAGGGAG
533241 AGGA
1 AGGA
533245 CCCTTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (11 bp):
AGGAGAGGGAG
Left flanking sequence: Indices 532719 -- 533218
CACTTCTAAACATAAGTCCCCCTTTCACTGTAGCTATTAGGCCCTCATTCGGAAAGCAAGGGCCC
TATATTATTTAGGGGTCACTCACTCATTCATATGCCCCCCACCCAATAAGCATCAAGGTACGTTA
GTGACTCGACTGATAAGGAGAGGTACGTTAGTGACTCGACTGATAAGGAGAGGAACTTTAGTTGC
TCGACCGTTAGCCCCCCCACCCAATAAGTAAACCCTAACCTTTAGGTGCTCGACCTTAAGGACCT
TTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGC
AGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCT
TTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCA
ATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 533245 -- 533744
CCCTTTAGGGGGCTCGACCGTTAGGGAGAGGAGAGGACCGGTAGGGGCTCACCATTCCGATGGTG
AGGATTTCTCGACTAAAAAGCCATAGATGGATAGATGGTGAAACGATCACAAGATGGATGAATGA
GTGAATTCATCCATCTTTGGTCATTCTATCTATATATGTCATTACGCTTTTTTTCTTTATGGGTG
AGCAATAAATTACCTTCGCCCCTACACCAAGTAAGTAATTCAGGAGTGTAGCCGCTTGTCCGCAT
CGGGCAAGGTATAAAAAGTAGCTCTGCTACGATTGTAAGTATGCGCTAGTAAGGGTAGTTCAAGT
CACAGTGGAAGTACCATTGATGTTGGGTGATACCAATTGATGTTTGACATGGCATGCGGAAGTAC
GTATGTGGGACGGTGCGATAGAAAGTAGTGGACGGTTCGATAGCTAGCGATGATTGGCGGTAGGT
GCGATACGAGGTAGTGAACGTTGGAAGCAGTAGACGGGGTGAGCG
Found at i:533279 original size:48 final size:47
Alignment explanation
Indices: 533190--533281 Score: 132
Period size: 49 Copynumber: 1.9 Consensus size: 47
533180 AAACCCAAGA
* *
533190 GGAGAGGACCTTTAGGTGCTCGACTGTTAAGGAGAGGGAGAGGAGAG
1 GGAGAGGACCTTTAGGGGCTCGACCGTTAAGGAGAGGGAGAGGAGAG
*
533237 GGAGAGGACCCTTTAGGGGGCTCGACCGTTAGGGAGA-GGAGAGGA
1 GGAGAGGA-CCTTTA-GGGGCTCGACCGTTAAGGAGAGGGAGAGGA
533282 CCGGTAGGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 8 0.20
48 14 0.35
49 18 0.45
ACGTcount: A:0.26, C:0.13, G:0.46, T:0.15
Consensus pattern (47 bp):
GGAGAGGACCTTTAGGGGCTCGACCGTTAAGGAGAGGGAGAGGAGAG
Left flanking sequence: Indices 532690 -- 533189
AGAGACTTTGGAATGACTTTCCCGGCGTACACTTCTAAACATAAGTCCCCCTTTCACTGTAGCTA
TTAGGCCCTCATTCGGAAAGCAAGGGCCCTATATTATTTAGGGGTCACTCACTCATTCATATGCC
CCCCACCCAATAAGCATCAAGGTACGTTAGTGACTCGACTGATAAGGAGAGGTACGTTAGTGACT
CGACTGATAAGGAGAGGAACTTTAGTTGCTCGACCGTTAGCCCCCCCACCCAATAAGTAAACCCT
AACCTTTAGGTGCTCGACCTTAAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGAC
CTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAG
TGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTC
GACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGA
Right flanking sequence: Indices 533282 -- 533781
CCGGTAGGGGCTCACCATTCCGATGGTGAGGATTTCTCGACTAAAAAGCCATAGATGGATAGATG
GTGAAACGATCACAAGATGGATGAATGAGTGAATTCATCCATCTTTGGTCATTCTATCTATATAT
GTCATTACGCTTTTTTTCTTTATGGGTGAGCAATAAATTACCTTCGCCCCTACACCAAGTAAGTA
ATTCAGGAGTGTAGCCGCTTGTCCGCATCGGGCAAGGTATAAAAAGTAGCTCTGCTACGATTGTA
AGTATGCGCTAGTAAGGGTAGTTCAAGTCACAGTGGAAGTACCATTGATGTTGGGTGATACCAAT
TGATGTTTGACATGGCATGCGGAAGTACGTATGTGGGACGGTGCGATAGAAAGTAGTGGACGGTT
CGATAGCTAGCGATGATTGGCGGTAGGTGCGATACGAGGTAGTGAACGTTGGAAGCAGTAGACGG
GGTGAGCGAGTAATGGTTCCCACAGCTTGGTTCCTTCGAATGCTT
Found at i:533891 original size:10 final size:10
Alignment explanation
Indices: 533876--533901 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
533866 AGCCCGATAC
533876 AATAAGCTAG
1 AATAAGCTAG
533886 AATAAGCTAG
1 AATAAGCTAG
533896 AATAAG
1 AATAAG
533902 GTGGTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.19, T:0.19
Consensus pattern (10 bp):
AATAAGCTAG
Left flanking sequence: Indices 533376 -- 533875
TGAATTCATCCATCTTTGGTCATTCTATCTATATATGTCATTACGCTTTTTTTCTTTATGGGTGA
GCAATAAATTACCTTCGCCCCTACACCAAGTAAGTAATTCAGGAGTGTAGCCGCTTGTCCGCATC
GGGCAAGGTATAAAAAGTAGCTCTGCTACGATTGTAAGTATGCGCTAGTAAGGGTAGTTCAAGTC
ACAGTGGAAGTACCATTGATGTTGGGTGATACCAATTGATGTTTGACATGGCATGCGGAAGTACG
TATGTGGGACGGTGCGATAGAAAGTAGTGGACGGTTCGATAGCTAGCGATGATTGGCGGTAGGTG
CGATACGAGGTAGTGAACGTTGGAAGCAGTAGACGGGGTGAGCGAGTAATGGTTCCCACAGCTTG
GTTCCTTCGAATGCTTGTGGGTATGCTTCACTCCGACCGGTAGGGAGGGAGGGACTCATCATGGT
TCAGTTAATCAGTAAATGAATTAGTTCATGCCATTAGCCCGATAC
Right flanking sequence: Indices 533902 -- 534401
GTGGTATAATTCGCTTGCTTTCTTTCCGATTAGCATTGCACCCACCCAGCCAGAATTCAACGAAT
CGACCGACTTCAATTTTTTGTTATGGCTGTTGTTGAAGGAAGTGATTCTCCCCTTTCGACCAACC
CAATTGGAATAGAACATTTCATAAGCCGCCGGATTCTCGCTCGATTGACTCCTTTCTCCGCTATC
AAACTTGCAATAATCGACATTAACGACTGAACCCTTAGCTCATCCTTGATCCCACACCTCTGGGG
CGGGGGAGTCACCTTTCATCACGCATGTGTGCGCATGCACGTATATAGTCTAATGCAGCAGTAGT
AGTAGTATAAGAGCTATAGGTAGTGAGATAGATAGAGTTAGAGAGTTAGATGGGTCTAGCTAGAG
CTAGTTGTTGTATAGCTGGATAGAAGGTATGATGAGGATAGGCATGATGAGATGGGAGGTATAAT
GAGGAGAGGTATGATGGGCTGGAAGATGGGAAGATGGGAAGATGG
Found at i:534390 original size:8 final size:8
Alignment explanation
Indices: 534377--534410 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
534367 ATGATGGGCT
534377 GGAAGATG
1 GGAAGATG
534385 GGAAGATG
1 GGAAGATG
534393 GGAAGATG
1 GGAAGATG
534401 GGAAGATG
1 GGAAGATG
534409 GG
1 GG
534411 GGATGGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.53, T:0.12
Consensus pattern (8 bp):
GGAAGATG
Left flanking sequence: Indices 533877 -- 534376
ATAAGCTAGAATAAGCTAGAATAAGGTGGTATAATTCGCTTGCTTTCTTTCCGATTAGCATTGCA
CCCACCCAGCCAGAATTCAACGAATCGACCGACTTCAATTTTTTGTTATGGCTGTTGTTGAAGGA
AGTGATTCTCCCCTTTCGACCAACCCAATTGGAATAGAACATTTCATAAGCCGCCGGATTCTCGC
TCGATTGACTCCTTTCTCCGCTATCAAACTTGCAATAATCGACATTAACGACTGAACCCTTAGCT
CATCCTTGATCCCACACCTCTGGGGCGGGGGAGTCACCTTTCATCACGCATGTGTGCGCATGCAC
GTATATAGTCTAATGCAGCAGTAGTAGTAGTATAAGAGCTATAGGTAGTGAGATAGATAGAGTTA
GAGAGTTAGATGGGTCTAGCTAGAGCTAGTTGTTGTATAGCTGGATAGAAGGTATGATGAGGATA
GGCATGATGAGATGGGAGGTATAATGAGGAGAGGTATGATGGGCT
Right flanking sequence: Indices 534411 -- 534910
GGATGGGATGATAGGTCTGATGGTAGTGATGATGGGTATGCTGGGCTGATAGTGATGATGGTCTG
GATGGTAGTGATGATGGGTATGCTGTATCTAGGTTGATAGGGCCTCTATATAGCCGTATAGAGAG
CCCCAGGGGTGAAGTGGGATAGATGGAGATAGAGTGAGTCTTAGCGGTCTGATTCTGATGGCTGG
TATGGGGGGTAGGGATGGTAGGGATGGAATGCTTGCTTGCTGGATGGATGGAAAGTAGTCCTAGC
CGGAAGTCACGAGGATGGAATCAAGCCTCAACCTGCCTGAAGGATGGAACTCCCTTACAGCTTTC
ATCCCTCCCTTACAGCTTTCATCCCTCCCTTACAGCTTTCATCCCTCGGTTGGCCTAACTCACTA
ACCCAACCACCTTCTCTGGATGTCTTGCCTGGTTCCACTATGGTGATTCGATCCATTAGGTCTGG
TTATTCCAGCGAGTCCAGTCATGAATGAGAGAGATGATATATGCC
Found at i:534442 original size:21 final size:21
Alignment explanation
Indices: 534417--534492 Score: 73
Period size: 21 Copynumber: 3.4 Consensus size: 21
534407 TGGGGGATGG
534417 GATGATAGGTCT-GATGGTAGT
1 GATGAT-GGTCTGGATGGTAGT
* *
534438 GATGATGGGTATGCTGGGCTGATAGT
1 GATGAT-GG--T-CT-GGATGGTAGT
534464 GATGATGGTCTGGATGGTAGT
1 GATGATGGTCTGGATGGTAGT
534485 GATGATGG
1 GATGATGG
534493 GTATGCTGTA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
21 24 0.53
22 2 0.04
23 2 0.04
24 2 0.04
25 2 0.04
26 13 0.29
ACGTcount: A:0.21, C:0.05, G:0.42, T:0.32
Consensus pattern (21 bp):
GATGATGGTCTGGATGGTAGT
Left flanking sequence: Indices 533917 -- 534416
TGCTTTCTTTCCGATTAGCATTGCACCCACCCAGCCAGAATTCAACGAATCGACCGACTTCAATT
TTTTGTTATGGCTGTTGTTGAAGGAAGTGATTCTCCCCTTTCGACCAACCCAATTGGAATAGAAC
ATTTCATAAGCCGCCGGATTCTCGCTCGATTGACTCCTTTCTCCGCTATCAAACTTGCAATAATC
GACATTAACGACTGAACCCTTAGCTCATCCTTGATCCCACACCTCTGGGGCGGGGGAGTCACCTT
TCATCACGCATGTGTGCGCATGCACGTATATAGTCTAATGCAGCAGTAGTAGTAGTATAAGAGCT
ATAGGTAGTGAGATAGATAGAGTTAGAGAGTTAGATGGGTCTAGCTAGAGCTAGTTGTTGTATAG
CTGGATAGAAGGTATGATGAGGATAGGCATGATGAGATGGGAGGTATAATGAGGAGAGGTATGAT
GGGCTGGAAGATGGGAAGATGGGAAGATGGGAAGATGGGGGATGG
Right flanking sequence: Indices 534493 -- 534992
GTATGCTGTATCTAGGTTGATAGGGCCTCTATATAGCCGTATAGAGAGCCCCAGGGGTGAAGTGG
GATAGATGGAGATAGAGTGAGTCTTAGCGGTCTGATTCTGATGGCTGGTATGGGGGGTAGGGATG
GTAGGGATGGAATGCTTGCTTGCTGGATGGATGGAAAGTAGTCCTAGCCGGAAGTCACGAGGATG
GAATCAAGCCTCAACCTGCCTGAAGGATGGAACTCCCTTACAGCTTTCATCCCTCCCTTACAGCT
TTCATCCCTCCCTTACAGCTTTCATCCCTCGGTTGGCCTAACTCACTAACCCAACCACCTTCTCT
GGATGTCTTGCCTGGTTCCACTATGGTGATTCGATCCATTAGGTCTGGTTATTCCAGCGAGTCCA
GTCATGAATGAGAGAGATGATATATGCCCATAGCAGCATGATCTGCTAAGGCATAATGACAAATA
TCGAGTCATGAATGAGATAGATTATATATGTCATTATGTGATCGG
Found at i:534745 original size:20 final size:20
Alignment explanation
Indices: 534720--534782 Score: 126
Period size: 20 Copynumber: 3.1 Consensus size: 20
534710 AAGGATGGAA
534720 CTCCCTTACAGCTTTCATCC
1 CTCCCTTACAGCTTTCATCC
534740 CTCCCTTACAGCTTTCATCC
1 CTCCCTTACAGCTTTCATCC
534760 CTCCCTTACAGCTTTCATCC
1 CTCCCTTACAGCTTTCATCC
534780 CTC
1 CTC
534783 GGTTGGCCTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.14, C:0.46, G:0.05, T:0.35
Consensus pattern (20 bp):
CTCCCTTACAGCTTTCATCC
Left flanking sequence: Indices 534220 -- 534719
CAGTAGTAGTAGTATAAGAGCTATAGGTAGTGAGATAGATAGAGTTAGAGAGTTAGATGGGTCTA
GCTAGAGCTAGTTGTTGTATAGCTGGATAGAAGGTATGATGAGGATAGGCATGATGAGATGGGAG
GTATAATGAGGAGAGGTATGATGGGCTGGAAGATGGGAAGATGGGAAGATGGGAAGATGGGGGAT
GGGATGATAGGTCTGATGGTAGTGATGATGGGTATGCTGGGCTGATAGTGATGATGGTCTGGATG
GTAGTGATGATGGGTATGCTGTATCTAGGTTGATAGGGCCTCTATATAGCCGTATAGAGAGCCCC
AGGGGTGAAGTGGGATAGATGGAGATAGAGTGAGTCTTAGCGGTCTGATTCTGATGGCTGGTATG
GGGGGTAGGGATGGTAGGGATGGAATGCTTGCTTGCTGGATGGATGGAAAGTAGTCCTAGCCGGA
AGTCACGAGGATGGAATCAAGCCTCAACCTGCCTGAAGGATGGAA
Right flanking sequence: Indices 534783 -- 535282
GGTTGGCCTAACTCACTAACCCAACCACCTTCTCTGGATGTCTTGCCTGGTTCCACTATGGTGAT
TCGATCCATTAGGTCTGGTTATTCCAGCGAGTCCAGTCATGAATGAGAGAGATGATATATGCCCA
TAGCAGCATGATCTGCTAAGGCATAATGACAAATATCGAGTCATGAATGAGATAGATTATATATG
TCATTATGTGATCGGTTCATTCATTATATATGTCATTACGCTCCTACCTACAAGCCCTCTCACCT
GCCAAGCAATCTCACCTGCCAAGCTGAGCCAAGCCATCGAACCAATCTAATAGAATATATGCGTT
GTCTGCAATGTTCCGATATGGGCATATGTCATTCATTCATGCATAATGACATATATAATATATGC
ATTTTCTGGGTTCATTACATATCTAATGAATGACTGGAAGAAATGCCTAATTCAATATATAATAG
CAGATTGGATTCGATCTCTCAAAATAGCATAATGACATATATAAG
Found at i:537430 original size:26 final size:26
Alignment explanation
Indices: 537396--537445 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
537386 TGCTAACGCA
537396 CCCTCACCATATGAATAGTGAGTGAC
1 CCCTCACCATATGAATAGTGAGTGAC
537422 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATATGAATAGTGAGTG
537446 GCTCCGCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (26 bp):
CCCTCACCATATGAATAGTGAGTGAC
Left flanking sequence: Indices 536896 -- 537395
GCTGCACTCACAAGAGACTGCCAGTGATATGCTGGAGGAAGGTGGGGATGACGTCAAGTCCGCAT
GGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCCGTAAG
GCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTT
GGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCG
CCCGTCACACCCTGGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTATCTATATAT
GTTCCACTAGTGTGGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTC
GACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAATCCCTCTCCC
CTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACGCA
Right flanking sequence: Indices 537446 -- 537945
GCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCC
CTATGAAGAAGTAAGGGCCCTTTCACCCCACCCATTTGAAGCTTACTTTTTCAGATCTGCCTTGC
CCCTCCTATTTCTTCTCTGGCGGCTTCGCACCCTTTGTATGAACATTTTTCTCCCTGGAAACAAT
ATTTGAACCTGATTTGATAACCTTCTATTTTCAGTGACGGTTGACTTTTTCATCATTTCTTTTTG
TGCCAGCCCGCAGTCAATCTAATAAGCAAGTGATATAATCGAGTA
Found at i:537488 original size:27 final size:27
Alignment explanation
Indices: 537452--537510 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
537442 AGTGGCTCCG
537452 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
537479 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
537506 CCCCT
1 CCCCT
537511 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 536952 -- 537451
AGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAA
GGCCGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAA
CATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTG
TACACACCGCCCGTCACACCCTGGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTA
TCTATATATGTTCCACTAGTGTGGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGT
GGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAAT
CCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACGCACCCTCACCATA
TGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 537511 -- 538010
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCC
CTATGAAGAAGTAAGGGCCCTTTCACCCCACCCATTTGAAGCTTACTTTTTCAGATCTGCCTTGC
CCCTCCTATTTCTTCTCTGGCGGCTTCGCACCCTTTGTATGAACATTTTTCTCCCTGGAAACAAT
ATTTGAACCTGATTTGATAACCTTCTATTTTCAGTGACGGTTGACTTTTTCATCATTTCTTTTTG
TGCCAGCCCGCAGTCAATCTAATAAGCAAGTGATATAATCGAGTAATAACCGCAAAAAGCGAGCA
GCCGGGTTCTCCCAGCCTCGGTTCATATCCCAGCCAGCAAGGAAG
Found at i:537520 original size:27 final size:27
Alignment explanation
Indices: 537462--537532 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
537452 CCCCTCTCCT
*** *
537462 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
537489 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
537516 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
537533 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 536962 -- 537461
GCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCCGTAAGG
CGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGAAGTTG
GAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGC
CCGTCACACCCTGGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTATCTATATATG
TTCCACTAGTGTGGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCG
ACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAATCCCTCTCCCC
TCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGA
GTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCT
Right flanking sequence: Indices 537533 -- 538032
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATGGT
GAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTGACAGTCGAG
CCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTATGAAGAAGTAAGGGCCCTT
TCACCCCACCCATTTGAAGCTTACTTTTTCAGATCTGCCTTGCCCCTCCTATTTCTTCTCTGGCG
GCTTCGCACCCTTTGTATGAACATTTTTCTCCCTGGAAACAATATTTGAACCTGATTTGATAACC
TTCTATTTTCAGTGACGGTTGACTTTTTCATCATTTCTTTTTGTGCCAGCCCGCAGTCAATCTAA
TAAGCAAGTGATATAATCGAGTAATAACCGCAAAAAGCGAGCAGCCGGGTTCTCCCAGCCTCGGT
TCATATCCCAGCCAGCAAGGAAGAAGCACGTAAGTAATCCTGCAC
Found at i:538963 original size:23 final size:23
Alignment explanation
Indices: 538899--538973 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
538889 ACGTATCCGC
* *
538899 CCAGCCTTGTCCCAACAATGTATCCAG
1 CCAGCCTTGTCCCAACTATGT-T---T
* *
538926 CCAGCCTCGTTCCAACTATGTTT
1 CCAGCCTTGTCCCAACTATGTTT
* *
538949 CCAGCCTTGTCCCAAGTAGGTTT
1 CCAGCCTTGTCCCAACTATGTTT
538972 CC
1 CC
538974 CTTCCAGCCT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 21 0.52
26 1 0.03
27 18 0.45
ACGTcount: A:0.20, C:0.36, G:0.16, T:0.28
Consensus pattern (23 bp):
CCAGCCTTGTCCCAACTATGTTT
Left flanking sequence: Indices 538399 -- 538898
GAGTTCAACACGCTTCTCAAATTGGGGAAATTCAATAACTAATTCAAGGTGGCGTATGCGGGATG
GTAAATTGTGGAGTGAAAGGGTGAGAAGTGATAAATTATACGCCTTGTCTACGCCAATGGTAAAT
GCAATACGGAAAGGTGGCCTATTACTGGTAGGTAGGGGCCCCTTTCAAATAGAGGACAAAAGGGG
AGGGCAGGCAAGACCTATCGGACCTTGAACTGGTCAATTCAGTAATAGAAGGTGGCGTGGTCACT
GAAAGGTAGCGGCCCAAGAAGATGGTAAATTAACTAGTTCAAAGGTGGCCTATGTTAAGGAAGTG
GGGATATCAAGAATGAAGTGGTTTTGAAATCAAAAAGCATGCTGCATCAAAAGGAAGGGATTTGA
GGTTTGACCTCCGAGAAGTGGTGGGGTATATATTCCCCTCACGATGGTCGTTTTTCCTCCGACTA
TGAGCGGGGGGTCTTAAGTGTATGTAACACCACGTACGTATCCGC
Right flanking sequence: Indices 538974 -- 539473
CTTCCAGCCTCGCTCTAACTCTGTATCCGTCCAGCCTCGCCCCAACTATGTATCCGTCCAGCCTT
GTCCAAACTATGTCTCCAACCTCATTCCAACTAGGTAGCCTCGTTCCAAGTAGGTTTCATTCAGT
CGCCAATCAAATAAGCCCGCAATCAAATCAAGAGGGGTTGCACGGTGAATCAACGTAAATGAACC
ATGTCTCTCTTTCTCGCTATGTAATCTAGTGGTTGCAGCAGCCCCCACTAAATAAGAATAGGAAC
AAGTCAATGTTCTGTATCGTTAAGCTTTGTGTGTTGAGACGGGGATGCATATTGAGGGACGGGGG
AGTTTGTTGAACGGGTGGCACATGTTTCTTTCTCTCGGGTCTGTGGGCAGGTTGTACTGTGTGAT
TGGTGAATGCACCTAACGCTGGGGACAAGATGATTTCCCCTGGCCGCTCCTTCCGGCCAGCATCA
TCAGCGGACTAATTCAGATCTCAATCCATCTAGGCTTTTCCGCCT
Found at i:539020 original size:27 final size:27
Alignment explanation
Indices: 538891--539051 Score: 107
Period size: 27 Copynumber: 6.1 Consensus size: 27
538881 CACCACGTAC
* * * *
538891 GTATCCGCCCAGCCTTGTCCCAACAAT
1 GTATCCGTCCAGCCTCGCCCCAACTAT
**
538918 GTATCCAG-CCAGCCTCGTTCCAACTAT
1 GTATCC-GTCCAGCCTCGCCCCAACTAT
* * * *
538945 GT-T---TCCAGCCTTGTCCCAAGTAG
1 GTATCCGTCCAGCCTCGCCCCAACTAT
* * * * *
538968 GTTTCCCTTCCAGCCTCGCTCTAACTCT
1 GTAT-CCGTCCAGCCTCGCCCCAACTAT
538996 GTATCCGTCCAGCCTCGCCCCAACTAT
1 GTATCCGTCCAGCCTCGCCCCAACTAT
* * *
539023 GTATCCGTCCAGCCTTGTCCAAACTAT
1 GTATCCGTCCAGCCTCGCCCCAACTAT
539050 GT
1 GT
539052 CTCCAACCTC
Statistics
Matches: 105, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
23 17 0.16
24 1 0.01
26 1 0.01
27 69 0.66
28 17 0.16
ACGTcount: A:0.19, C:0.38, G:0.16, T:0.28
Consensus pattern (27 bp):
GTATCCGTCCAGCCTCGCCCCAACTAT
Left flanking sequence: Indices 538391 -- 538890
AATTCTTTGAGTTCAACACGCTTCTCAAATTGGGGAAATTCAATAACTAATTCAAGGTGGCGTAT
GCGGGATGGTAAATTGTGGAGTGAAAGGGTGAGAAGTGATAAATTATACGCCTTGTCTACGCCAA
TGGTAAATGCAATACGGAAAGGTGGCCTATTACTGGTAGGTAGGGGCCCCTTTCAAATAGAGGAC
AAAAGGGGAGGGCAGGCAAGACCTATCGGACCTTGAACTGGTCAATTCAGTAATAGAAGGTGGCG
TGGTCACTGAAAGGTAGCGGCCCAAGAAGATGGTAAATTAACTAGTTCAAAGGTGGCCTATGTTA
AGGAAGTGGGGATATCAAGAATGAAGTGGTTTTGAAATCAAAAAGCATGCTGCATCAAAAGGAAG
GGATTTGAGGTTTGACCTCCGAGAAGTGGTGGGGTATATATTCCCCTCACGATGGTCGTTTTTCC
TCCGACTATGAGCGGGGGGTCTTAAGTGTATGTAACACCACGTAC
Right flanking sequence: Indices 539052 -- 539551
CTCCAACCTCATTCCAACTAGGTAGCCTCGTTCCAAGTAGGTTTCATTCAGTCGCCAATCAAATA
AGCCCGCAATCAAATCAAGAGGGGTTGCACGGTGAATCAACGTAAATGAACCATGTCTCTCTTTC
TCGCTATGTAATCTAGTGGTTGCAGCAGCCCCCACTAAATAAGAATAGGAACAAGTCAATGTTCT
GTATCGTTAAGCTTTGTGTGTTGAGACGGGGATGCATATTGAGGGACGGGGGAGTTTGTTGAACG
GGTGGCACATGTTTCTTTCTCTCGGGTCTGTGGGCAGGTTGTACTGTGTGATTGGTGAATGCACC
TAACGCTGGGGACAAGATGATTTCCCCTGGCCGCTCCTTCCGGCCAGCATCATCAGCGGACTAAT
TCAGATCTCAATCCATCTAGGCTTTTCCGCCTTGTCCCAACTCTGTATAAAGCCAGCTTCGCCCA
AACTAGGTATCCAGCCTCTCCCAACTAGTAGGTATCCAGCCTCGT
Found at i:539521 original size:23 final size:24
Alignment explanation
Indices: 539494--539550 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 24
539484 CTGTATAAAG
*
539494 CCAGCTTCGCCCAA-ACTAGGTAT
1 CCAGCCTCGCCCAACACTAGGTAT
* *
539517 CCAGCCTCTCCCAACTAGTAGGTAT
1 CCAGCCTCGCCCAAC-ACTAGGTAT
539542 CCAGCCTCG
1 CCAGCCTCG
539551 TTCCGACTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 12 0.43
25 16 0.57
ACGTcount: A:0.23, C:0.39, G:0.18, T:0.21
Consensus pattern (24 bp):
CCAGCCTCGCCCAACACTAGGTAT
Left flanking sequence: Indices 538994 -- 539493
CTGTATCCGTCCAGCCTCGCCCCAACTATGTATCCGTCCAGCCTTGTCCAAACTATGTCTCCAAC
CTCATTCCAACTAGGTAGCCTCGTTCCAAGTAGGTTTCATTCAGTCGCCAATCAAATAAGCCCGC
AATCAAATCAAGAGGGGTTGCACGGTGAATCAACGTAAATGAACCATGTCTCTCTTTCTCGCTAT
GTAATCTAGTGGTTGCAGCAGCCCCCACTAAATAAGAATAGGAACAAGTCAATGTTCTGTATCGT
TAAGCTTTGTGTGTTGAGACGGGGATGCATATTGAGGGACGGGGGAGTTTGTTGAACGGGTGGCA
CATGTTTCTTTCTCTCGGGTCTGTGGGCAGGTTGTACTGTGTGATTGGTGAATGCACCTAACGCT
GGGGACAAGATGATTTCCCCTGGCCGCTCCTTCCGGCCAGCATCATCAGCGGACTAATTCAGATC
TCAATCCATCTAGGCTTTTCCGCCTTGTCCCAACTCTGTATAAAG
Right flanking sequence: Indices 539551 -- 540050
TTCCGACTAGGTAGCCTCGTTCCGACTAGGTAGCCTCATTCCAACTAGGTTTCATTCAGTCGCCA
ATCAAATCAAGCAAGCCCGCAATCAAATCAAAAGTTTTCCGGGTGAATCAACGTAAATGACCCAA
CCATGTCTTTCTTTCTCTTCGATATGTCTAGTGGTTGCAGCAGATAGGAACAAGTCAATGTTCTG
TACGTTGAGGGACGGGGTATTTAGTTGAGACGGTGGAGTTAGTTGAAGGGTATCGTGTGCTTGCT
GCGGGACCCCATCACCCCTCTCAAAAGATGTGGGCTATAAATCAATCACTATCCGGGCAAGCATC
ACCCACCTCCTGGGGCTATCAGCGACCTTCTGGCAATGACCCTCTGGAATGACCTTCTGTATCTG
ACTGGCTATGACCCGCTGGCTATGCCTGGCTATCATCGGCTGTACCCCCATCTATTTTTGGGGCA
ATGACCTCCTGGCACTAACTGGTTGGCGATGACTGGCTACTGCGA
Found at i:539568 original size:19 final size:19
Alignment explanation
Indices: 539544--539600 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
539534 GTAGGTATCC
539544 AGCCTCGTTCCGACTAGGT
1 AGCCTCGTTCCGACTAGGT
539563 AGCCTCGTTCCGACTAGGT
1 AGCCTCGTTCCGACTAGGT
* *
539582 AGCCTCATTCCAACTAGGT
1 AGCCTCGTTCCGACTAGGT
539601 TTCATTCAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (19 bp):
AGCCTCGTTCCGACTAGGT
Left flanking sequence: Indices 539044 -- 539543
AACTATGTCTCCAACCTCATTCCAACTAGGTAGCCTCGTTCCAAGTAGGTTTCATTCAGTCGCCA
ATCAAATAAGCCCGCAATCAAATCAAGAGGGGTTGCACGGTGAATCAACGTAAATGAACCATGTC
TCTCTTTCTCGCTATGTAATCTAGTGGTTGCAGCAGCCCCCACTAAATAAGAATAGGAACAAGTC
AATGTTCTGTATCGTTAAGCTTTGTGTGTTGAGACGGGGATGCATATTGAGGGACGGGGGAGTTT
GTTGAACGGGTGGCACATGTTTCTTTCTCTCGGGTCTGTGGGCAGGTTGTACTGTGTGATTGGTG
AATGCACCTAACGCTGGGGACAAGATGATTTCCCCTGGCCGCTCCTTCCGGCCAGCATCATCAGC
GGACTAATTCAGATCTCAATCCATCTAGGCTTTTCCGCCTTGTCCCAACTCTGTATAAAGCCAGC
TTCGCCCAAACTAGGTATCCAGCCTCTCCCAACTAGTAGGTATCC
Right flanking sequence: Indices 539601 -- 540100
TTCATTCAGTCGCCAATCAAATCAAGCAAGCCCGCAATCAAATCAAAAGTTTTCCGGGTGAATCA
ACGTAAATGACCCAACCATGTCTTTCTTTCTCTTCGATATGTCTAGTGGTTGCAGCAGATAGGAA
CAAGTCAATGTTCTGTACGTTGAGGGACGGGGTATTTAGTTGAGACGGTGGAGTTAGTTGAAGGG
TATCGTGTGCTTGCTGCGGGACCCCATCACCCCTCTCAAAAGATGTGGGCTATAAATCAATCACT
ATCCGGGCAAGCATCACCCACCTCCTGGGGCTATCAGCGACCTTCTGGCAATGACCCTCTGGAAT
GACCTTCTGTATCTGACTGGCTATGACCCGCTGGCTATGCCTGGCTATCATCGGCTGTACCCCCA
TCTATTTTTGGGGCAATGACCTCCTGGCACTAACTGGTTGGCGATGACTGGCTACTGCGACTGGC
AATGCTTCTGAAAAAGACCCTATGGCTCTTTCTGTGTATGATCAG
Found at i:539928 original size:13 final size:14
Alignment explanation
Indices: 539899--539934 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
539889 GGCTATCAGC
539899 GACCTTCTGGCAAT
1 GACCTTCTGGCAAT
*
539913 GACCCTCTGG-AAT
1 GACCTTCTGGCAAT
539926 GACCTTCTG
1 GACCTTCTG
539935 TATCTGACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.28
Consensus pattern (14 bp):
GACCTTCTGGCAAT
Left flanking sequence: Indices 539399 -- 539898
TCCCCTGGCCGCTCCTTCCGGCCAGCATCATCAGCGGACTAATTCAGATCTCAATCCATCTAGGC
TTTTCCGCCTTGTCCCAACTCTGTATAAAGCCAGCTTCGCCCAAACTAGGTATCCAGCCTCTCCC
AACTAGTAGGTATCCAGCCTCGTTCCGACTAGGTAGCCTCGTTCCGACTAGGTAGCCTCATTCCA
ACTAGGTTTCATTCAGTCGCCAATCAAATCAAGCAAGCCCGCAATCAAATCAAAAGTTTTCCGGG
TGAATCAACGTAAATGACCCAACCATGTCTTTCTTTCTCTTCGATATGTCTAGTGGTTGCAGCAG
ATAGGAACAAGTCAATGTTCTGTACGTTGAGGGACGGGGTATTTAGTTGAGACGGTGGAGTTAGT
TGAAGGGTATCGTGTGCTTGCTGCGGGACCCCATCACCCCTCTCAAAAGATGTGGGCTATAAATC
AATCACTATCCGGGCAAGCATCACCCACCTCCTGGGGCTATCAGC
Right flanking sequence: Indices 539935 -- 540434
TATCTGACTGGCTATGACCCGCTGGCTATGCCTGGCTATCATCGGCTGTACCCCCATCTATTTTT
GGGGCAATGACCTCCTGGCACTAACTGGTTGGCGATGACTGGCTACTGCGACTGGCAATGCTTCT
GAAAAAGACCCTATGGCTCTTTCTGTGTATGATCAGCTATCAGCGGGAATGACCTACCTTCTGGC
AAAGAAAGGTTGGCTGTATGACGGGTACTTACGGGCTTACTATACCACCTTCTGGCTATGAGACT
GGCTATTGGTTATGAGACTGGCTATGACTAGAGGTCCTAGCAATGATACAGACAATGACCTTAAG
GCAAACTAGCGTCTCTGACTCCCGGCAATAACTAGTGGCTCTCAGCAATGACAACTATGTGATCG
GCCATCGACTGCTCTTCCTTGTGACAAGTACCTCCCTCCAGGCGACTGGCTCTCGGCAATGACCT
TAAGGCAAGGACTCCGATGATTGGCAGCAATGCTACACCTGGCAA
Found at i:541797 original size:121 final size:121
Alignment explanation
Indices: 541583--541823 Score: 482
Period size: 121 Copynumber: 2.0 Consensus size: 121
541573 TGATGGTGTA
541583 AATGGGTGTTATGGCTCGATCGGTTGATTTCTTCGTCGAGCCAGTGTTCGCCTGGGGTTGGGCTC
1 AATGGGTGTTATGGCTCGATCGGTTGATTTCTTCGTCGAGCCAGTGTTCGCCTGGGGTTGGGCTC
541648 AATGGGATGGCCCGCCCTTGGTGGTATGGATGGGTGTAATCGATCTAGCAATCAAG
66 AATGGGATGGCCCGCCCTTGGTGGTATGGATGGGTGTAATCGATCTAGCAATCAAG
541704 AATGGGTGTTATGGCTCGATCGGTTGATTTCTTCGTCGAGCCAGTGTTCGCCTGGGGTTGGGCTC
1 AATGGGTGTTATGGCTCGATCGGTTGATTTCTTCGTCGAGCCAGTGTTCGCCTGGGGTTGGGCTC
541769 AATGGGATGGCCCGCCCTTGGTGGTATGGATGGGTGTAATCGATCTAGCAATCAA
66 AATGGGATGGCCCGCCCTTGGTGGTATGGATGGGTGTAATCGATCTAGCAATCAA
541824 TCAAAAACAA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 120 1.00
ACGTcount: A:0.17, C:0.19, G:0.34, T:0.30
Consensus pattern (121 bp):
AATGGGTGTTATGGCTCGATCGGTTGATTTCTTCGTCGAGCCAGTGTTCGCCTGGGGTTGGGCTC
AATGGGATGGCCCGCCCTTGGTGGTATGGATGGGTGTAATCGATCTAGCAATCAAG
Left flanking sequence: Indices 541083 -- 541582
ATGTTATTTCCAAAAAAATGTGGTGCCTGCCCATTATAATAGTAGGGGCCCGGTAGTCCGTCAAT
ATATCAATCAATCTAGCGAGCAAGCTCAAGAAGCAAGCTCACCCGCCAGCCAGCTCAAAAGCTCC
CCATCAATCTGGCTTTATTCATAATCCCATGGCTAAGGCAAGTAAAGCAAGTCCCAGCAAGTTGG
AGTTAGTTGGTCGTTTCCAGGCAAGCTCGTAAGCAGTTTGAGTTTGGTGGGAGTTTGAACTGAGT
AACGATGAGTGTCCAGGGTGGGATGGAAAGCCAGGTCAATGCTACCTACTGGTTGGAGAGGTGGT
TGCTCTTTCTGGTCTCTTCCTAAGACCTCCTAATCTGGCCACTCAGTAAGGCCAGGCAGCTCTCT
ATTCGTTTTCAACCCCGATCATTATGCCCTCCCTCGTCCGGTGGACCCCGCCCCGTCCGGGGGTC
CATGGGGTAACGGCATCTCTCCCTCCCGTATCGTGTGATGGTGTA
Right flanking sequence: Indices 541824 -- 542323
TCAAAAACAAATGCAATGAGAAAAGATTGATTGATTGCAACTAGAAGATATTCGAGCAACATTTG
TAAATCAAAACAAGCACATAGAAGCTCTGGGTGTAGCAACGTACGCGATGTTGTATCTTCTTCTT
GGTGGGATGGTGTATATTCTCTCCTGTTGTGAAGGTTGGATTAGCTCTTTCTTGGTGGGCTTGGT
GTGAGGTTGGCTCTTCTGGTTTGGGTAATCCTCATCCAGTGGTCGAGCCGCGCATCATGATTGGA
TTCGATGTTGCTATTATATATGTCATTATGGTATCGCTGATTGAATGACGATCTCCCTCATGTAT
AATGAAATGTCTCTTTGTATACGAGATTCTTTTCCAGTTTCAATTTACTTATTGGGTGGGGGGGC
TTTAAGATAGAAGGGAGGCTGGCAGTACTATCTGCATCACAGGAACATTCGCCAAAGTGTCTAAG
CAGATCCAGTAGATGGACCAGTTAGATATCGATACCCAGCAACAT
Found at i:546655 original size:26 final size:26
Alignment explanation
Indices: 546621--546670 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
546611 TGCTAACGCA
546621 CCCTCACCATATGAATAGTGAGTGAC
1 CCCTCACCATATGAATAGTGAGTGAC
546647 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATATGAATAGTGAGTG
546671 GCTCCGCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (26 bp):
CCCTCACCATATGAATAGTGAGTGAC
Left flanking sequence: Indices 546121 -- 546620
AGGAATTAGAAAAGCTTGTGTTATTATATATATAAAGTAAAGAATGACCATAAGTCGGGTTAACG
TCGAAGGTTCGTTTCAATCTTTCCCTCATAAGAAAGGAGAATGACGTGTCTTGTTTAGTTCAAAC
GCTCTCTCCCTCCCTACAAGGATACAGATATCGAAGTGTCCCGGATGGCAACAGCAGCTCCCAGA
TAGGTACTAATATACTGCAGACATCATATCATATCTCCATCACAGAAAATACAATCTACACACCG
CCCGTCACACCCTGGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTATCTATATAT
GTTCCACTAGTGTGGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTC
GACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAATCCCTCTCCC
CTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACGCA
Right flanking sequence: Indices 546671 -- 547170
GCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGC
TCGACCCCCGGGAGAGGGCCCTCTCCTTTCACAGTCGAGCCTGCCTCCGCATTAGGGTTTACTTA
TTGGGTGGGGGGGCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTA
ACAGTCGAGCCTGCTTGCGCATCCATATGCTCATATATAACTAACTACCACCATGCCCAGGTACG
TTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTA
GTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
Found at i:546713 original size:27 final size:27
Alignment explanation
Indices: 546677--546735 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
546667 AGTGGCTCCG
546677 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
546704 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
546731 CCCCT
1 CCCCT
546736 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 546177 -- 546676
GGGTTAACGTCGAAGGTTCGTTTCAATCTTTCCCTCATAAGAAAGGAGAATGACGTGTCTTGTTT
AGTTCAAACGCTCTCTCCCTCCCTACAAGGATACAGATATCGAAGTGTCCCGGATGGCAACAGCA
GCTCCCAGATAGGTACTAATATACTGCAGACATCATATCATATCTCCATCACAGAAAATACAATC
TACACACCGCCCGTCACACCCTGGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTA
TCTATATATGTTCCACTAGTGTGGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGT
GGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAAT
CCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACGCACCCTCACCATA
TGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 546736 -- 547235
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGC
TCGACCCCCGGGAGAGGGCCCTCTCCTTTCACAGTCGAGCCTGCCTCCGCATTAGGGTTTACTTA
TTGGGTGGGGGGGCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTA
ACAGTCGAGCCTGCTTGCGCATCCATATGCTCATATATAACTAACTACCACCATGCCCAGGTACG
TTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTA
GTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTAGTG
ACTCGACTGATAAGGAGAGGAAAGAGGAGGTGGGTGATTCGAGGA
Found at i:546745 original size:27 final size:27
Alignment explanation
Indices: 546687--546757 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
546677 CCCCTCTCCT
*** *
546687 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
546714 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
546741 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
546758 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 546187 -- 546686
CGAAGGTTCGTTTCAATCTTTCCCTCATAAGAAAGGAGAATGACGTGTCTTGTTTAGTTCAAACG
CTCTCTCCCTCCCTACAAGGATACAGATATCGAAGTGTCCCGGATGGCAACAGCAGCTCCCAGAT
AGGTACTAATATACTGCAGACATCATATCATATCTCCATCACAGAAAATACAATCTACACACCGC
CCGTCACACCCTGGGAGTTGATTTCGCCCGAAGCATCAGACCAATGATCACCCTATCTATATATG
TTCCACTAGTGTGGCCCACTATGGTTGGGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCG
ACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAATCCCTCTCCCC
TCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGA
GTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCT
Right flanking sequence: Indices 546758 -- 547257
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCT
CTCCTTTCACAGTCGAGCCTGCCTCCGCATTAGGGTTTACTTATTGGGTGGGGGGGCTTATGGTC
GAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCAT
CCATATGCTCATATATAACTAACTACCACCATGCCCAGGTACGTTAGTGACTCGACTGATAAGGA
CCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGACTCGACTGATAAGGACCC
TTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGACTCGACTGATAAGGAGAGGAA
AGAGGAGGTGGGTGATTCGAGGAGGTGGGTGATTCTATGTGCGTT
Found at i:547141 original size:35 final size:35
Alignment explanation
Indices: 547095--547211 Score: 124
Period size: 35 Copynumber: 3.6 Consensus size: 35
547085 CTTTAGGGGG
547095 CTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGA
1 CTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGA
******
547130 CTCGACTGATAAGGACCCTTTAGG---G---G-G-
1 CTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGA
547157 CTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGA
1 CTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGA
547192 CTCGACTGATAAGGAGAGGA
1 CTCGACTGATAAGGAGAGGA
547212 AAGAGGAGGT
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
27 18 0.29
28 1 0.02
29 1 0.02
30 1 0.02
32 1 0.02
33 1 0.02
34 1 0.02
35 38 0.61
ACGTcount: A:0.30, C:0.15, G:0.36, T:0.20
Consensus pattern (35 bp):
CTCGACTGATAAGGAGAGGAGAGGTACGTTAGTGA
Left flanking sequence: Indices 546595 -- 547094
CAAAGGCAGTCGAGTGTGCTAACGCACCCTCACCATATGAATAGTGAGTGACCCCTCACCATATG
AATAGTGAGTGGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAG
TCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGT
CGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCCCCTAAGTAAGAAATATAGGGTGAG
GTAACGAACGCTCGACCCCCGGGAGAGGGCCCTCTCCTTTCACAGTCGAGCCTGCCTCCGCATTA
GGGTTTACTTATTGGGTGGGGGGGCTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGT
TTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCATATGCTCATATATAACTAACTACCACCAT
GCCCAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGG
Right flanking sequence: Indices 547212 -- 547711
AAGAGGAGGTGGGTGATTCGAGGAGGTGGGTGATTCTATGTGCGTTAGCCGTATCTAGCAACCAA
GCTACTTACGGAGGAGGCTTATAAACCGCCCCATTATGGTAACCCTTCGACCCAGGAGGCTTCTT
CGGCTTATTCCTATGATCCATTCATTTGACTTATTGGGCTCTCAAATAAGTAACTAAAAGGCGTT
GGTCGAGCGGCCTAACGACACCTTATGGTCGAGCCTGCTGTAGCATCCTCTCACTCTCCCCGGTC
ATCGAGCAAGAATGTCCTTTCCCGTGGGTCATTGCATATATTATATATGTAATGATTCCATCCCA
CTCTGATGAATGAGGGAGAGGAACTGAAATAGGTGAAAGTTCAACTTCAAATCATTGGTGTAGGT
TATATCGATATAGCCCCCTTAGGAATTCCTTTCATAGGATAGTGGGCCTCCAAACGACCAATCAA
AAACTATCTCGGCGGAGGGGTAATAGTATAACTTATGAAGGGAAA
Found at i:547151 original size:62 final size:62
Alignment explanation
Indices: 547054--547206 Score: 306
Period size: 62 Copynumber: 2.5 Consensus size: 62
547044 CACCATGCCC
547054 AGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
547116 AGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
547178 AGGTACGTTAGTGACTCGACTGATAAGGA
1 AGGTACGTTAGTGACTCGACTGATAAGGA
547207 GAGGAAAGAG
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 91 1.00
ACGTcount: A:0.28, C:0.16, G:0.35, T:0.22
Consensus pattern (62 bp):
AGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAG
Left flanking sequence: Indices 546554 -- 547053
GGCTGGATCGAATCCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTAACG
CACCCTCACCATATGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCT
CCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAT
TAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCAT
ATGAATAGTGAGTGGCCCCTAAGTAAGAAATATAGGGTGAGGTAACGAACGCTCGACCCCCGGGA
GAGGGCCCTCTCCTTTCACAGTCGAGCCTGCCTCCGCATTAGGGTTTACTTATTGGGTGGGGGGG
CTTATGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTG
CTTGCGCATCCATATGCTCATATATAACTAACTACCACCATGCCC
Right flanking sequence: Indices 547207 -- 547706
GAGGAAAGAGGAGGTGGGTGATTCGAGGAGGTGGGTGATTCTATGTGCGTTAGCCGTATCTAGCA
ACCAAGCTACTTACGGAGGAGGCTTATAAACCGCCCCATTATGGTAACCCTTCGACCCAGGAGGC
TTCTTCGGCTTATTCCTATGATCCATTCATTTGACTTATTGGGCTCTCAAATAAGTAACTAAAAG
GCGTTGGTCGAGCGGCCTAACGACACCTTATGGTCGAGCCTGCTGTAGCATCCTCTCACTCTCCC
CGGTCATCGAGCAAGAATGTCCTTTCCCGTGGGTCATTGCATATATTATATATGTAATGATTCCA
TCCCACTCTGATGAATGAGGGAGAGGAACTGAAATAGGTGAAAGTTCAACTTCAAATCATTGGTG
TAGGTTATATCGATATAGCCCCCTTAGGAATTCCTTTCATAGGATAGTGGGCCTCCAAACGACCA
ATCAAAAACTATCTCGGCGGAGGGGTAATAGTATAACTTATGAAG
Found at i:547236 original size:17 final size:17
Alignment explanation
Indices: 547214--547247 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
547204 GGAGAGGAAA
547214 GAGGAGGTGGGTGATTC
1 GAGGAGGTGGGTGATTC
547231 GAGGAGGTGGGTGATTC
1 GAGGAGGTGGGTGATTC
547248 TATGTGCGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.53, T:0.24
Consensus pattern (17 bp):
GAGGAGGTGGGTGATTC
Left flanking sequence: Indices 546714 -- 547213
CTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGG
TCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCCCCTAAGTAAGAAA
TATAGGGTGAGGTAACGAACGCTCGACCCCCGGGAGAGGGCCCTCTCCTTTCACAGTCGAGCCTG
CCTCCGCATTAGGGTTTACTTATTGGGTGGGGGGGCTTATGGTCGAGCACCTAAAGGTTAGGGTT
TACTTATTGGTTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCATATGCTCATATATAACTA
ACTACCACCATGCCCAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGA
TAAGGAGAGGAGAGGTACGTTAGTGACTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAA
GGAGAGGAGAGGTACGTTAGTGACTCGACTGATAAGGAGAGGAAA
Right flanking sequence: Indices 547248 -- 547747
TATGTGCGTTAGCCGTATCTAGCAACCAAGCTACTTACGGAGGAGGCTTATAAACCGCCCCATTA
TGGTAACCCTTCGACCCAGGAGGCTTCTTCGGCTTATTCCTATGATCCATTCATTTGACTTATTG
GGCTCTCAAATAAGTAACTAAAAGGCGTTGGTCGAGCGGCCTAACGACACCTTATGGTCGAGCCT
GCTGTAGCATCCTCTCACTCTCCCCGGTCATCGAGCAAGAATGTCCTTTCCCGTGGGTCATTGCA
TATATTATATATGTAATGATTCCATCCCACTCTGATGAATGAGGGAGAGGAACTGAAATAGGTGA
AAGTTCAACTTCAAATCATTGGTGTAGGTTATATCGATATAGCCCCCTTAGGAATTCCTTTCATA
GGATAGTGGGCCTCCAAACGACCAATCAAAAACTATCTCGGCGGAGGGGTAATAGTATAACTTAT
GAAGGGAAAGACTAAGTAAGAGCATCTATTGGAGACATAGTAACA
Found at i:550917 original size:40 final size:40
Alignment explanation
Indices: 550873--551029 Score: 152
Period size: 40 Copynumber: 4.0 Consensus size: 40
550863 GGCCCCAAAG
550873 TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAA
1 TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAA
* ***
550913 TCGATGGCGGCGATGGCGG--C-GATGG-CG-GCCTTAACA
1 TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAA-A
* * *
550949 GTCGA-GCCTGC--TTGC-GCATCCTTATGGTCGAGCGAGAAA
1 -TCGATGGCGGCGATGGCGGC--CCTTATGGTCGAGCGAGAAA
550988 TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAA
1 TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAA
551028 TC
1 TC
551030 CCTCACCATC
Statistics
Matches: 90, Mismatches: 14, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
33 1 0.01
34 3 0.03
35 4 0.04
36 7 0.08
37 9 0.10
38 9 0.10
39 7 0.08
40 45 0.50
41 3 0.03
42 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.38, T:0.19
Consensus pattern (40 bp):
TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAA
Left flanking sequence: Indices 550373 -- 550872
ATAGAATGCGGAGATCCATTCAAGGGAAGGGGTGGATCCTTGAGTGGAAGGGCCACTATAGAATG
AATCCGGTAGGAGTGCCGCACCTGCGTTATTCCGTTTGGGTGGAGTGGAATCAAGAGAGAGCACC
CTTCGTGGTGACGCACCGGAGCACCTTAAATAAAGAAATAGGGCGTCCCTTTCGTCCTGGTTCAA
CCTTTCCCTGGCAGGAATGAGGGGAAGGTGGCGCACTGACTGACCTATTATCGGGAAGGAAGTGA
TATCCGATACGCTTCGGGGTGAAACCTGATATGAATGGAATGAATATAAGTGACCTGATATGAGT
GGAACGAATATGTTAGCGTGGACCGTCCAATCAGGCCTTGATCAGACGTCCTGCGCAACCCACTT
CGCTCTGATAGCAAACTCGACCATAGAGTGCGCAATGATGCCATGTGTCCGCTCAGGTCCCACTC
TCAACATCACACAGGCTCTTTTCCTCCCTTTCATGGGCCCCAAAG
Right flanking sequence: Indices 551030 -- 551529
CCTCACCATCGGAATGGTGAGCCCCTACCGGGCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAA
GGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGGCCTC
TCCTTAACAGTCGAGCCCCTGCCGGACCTTATGGTCGAGCCCCTACCGGTGATGGCGGCCTTAAC
AGTCGAGCCTGCTGGCGCATCCTTATGGTCGAGCAATAAATTCCTCTCCCTCTCCCTTAAGGTCG
AGCACCTAAAGGTCCTTATGGTCGAGCCCCTACCGGTCCTTACGGCATGGCCAAATTCTTAGGGT
TATATTTAGCCTACGCAGGGCACTAACACTACACATCACTGAACTTCACTGACCCCGCTTGGGTG
TGTAAAGTAGCCGTAAAACGCACGCAAATGCCCTCTCCTTATCAGTCGAGCCTGCTTACGCATCC
TTTCAGACGAGATTCCACTCTCGATGCATGCCTCTGGAAAACTAC
Found at i:550928 original size:9 final size:9
Alignment explanation
Indices: 550914--550941 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
550904 AGCGAGAAAT
550914 CGATGGCGG
1 CGATGGCGG
550923 CGATGGCGG
1 CGATGGCGG
550932 CGATGGCGG
1 CGATGGCGG
550941 C
1 C
550942 CTTAACAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.25, G:0.54, T:0.11
Consensus pattern (9 bp):
CGATGGCGG
Left flanking sequence: Indices 550414 -- 550913
GAGTGGAAGGGCCACTATAGAATGAATCCGGTAGGAGTGCCGCACCTGCGTTATTCCGTTTGGGT
GGAGTGGAATCAAGAGAGAGCACCCTTCGTGGTGACGCACCGGAGCACCTTAAATAAAGAAATAG
GGCGTCCCTTTCGTCCTGGTTCAACCTTTCCCTGGCAGGAATGAGGGGAAGGTGGCGCACTGACT
GACCTATTATCGGGAAGGAAGTGATATCCGATACGCTTCGGGGTGAAACCTGATATGAATGGAAT
GAATATAAGTGACCTGATATGAGTGGAACGAATATGTTAGCGTGGACCGTCCAATCAGGCCTTGA
TCAGACGTCCTGCGCAACCCACTTCGCTCTGATAGCAAACTCGACCATAGAGTGCGCAATGATGC
CATGTGTCCGCTCAGGTCCCACTCTCAACATCACACAGGCTCTTTTCCTCCCTTTCATGGGCCCC
AAAGTCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAAT
Right flanking sequence: Indices 550942 -- 551441
CTTAACAGTCGAGCCTGCTTGCGCATCCTTATGGTCGAGCGAGAAATCGATGGCGGCGATGGCGG
CCCTTATGGTCGAGCGAGAAATCCCTCACCATCGGAATGGTGAGCCCCTACCGGGCCTCTCCTCT
CCTTATCAGTCGAGCCCCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGA
ATGGTGAGCCCCTACCGGGCCTCTCCTTAACAGTCGAGCCCCTGCCGGACCTTATGGTCGAGCCC
CTACCGGTGATGGCGGCCTTAACAGTCGAGCCTGCTGGCGCATCCTTATGGTCGAGCAATAAATT
CCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCCCCTACCGGTCCTTA
CGGCATGGCCAAATTCTTAGGGTTATATTTAGCCTACGCAGGGCACTAACACTACACATCACTGA
ACTTCACTGACCCCGCTTGGGTGTGTAAAGTAGCCGTAAAACGCA
Found at i:551178 original size:30 final size:30
Alignment explanation
Indices: 551098--551184 Score: 77
Period size: 32 Copynumber: 2.8 Consensus size: 30
551088 CCCTAAAGGG
* *
551098 TCCTTGACAGTCGAGCCCCTACCGGTCCTC
1 TCCTTAACAGTCGAGCCCCTACCGGGCCTC
* * **
551128 ACCATCGGAATGGT-GAGCCCCTACCGGGCCTC
1 TCC-T--TAACAGTCGAGCCCCTACCGGGCCTC
*
551160 TCCTTAACAGTCGAGCCCCTGCCGG
1 TCCTTAACAGTCGAGCCCCTACCGG
551185 ACCTTATGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
29 4 0.10
30 14 0.33
31 2 0.05
32 19 0.45
33 3 0.07
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (30 bp):
TCCTTAACAGTCGAGCCCCTACCGGGCCTC
Left flanking sequence: Indices 550598 -- 551097
GCGCACTGACTGACCTATTATCGGGAAGGAAGTGATATCCGATACGCTTCGGGGTGAAACCTGAT
ATGAATGGAATGAATATAAGTGACCTGATATGAGTGGAACGAATATGTTAGCGTGGACCGTCCAA
TCAGGCCTTGATCAGACGTCCTGCGCAACCCACTTCGCTCTGATAGCAAACTCGACCATAGAGTG
CGCAATGATGCCATGTGTCCGCTCAGGTCCCACTCTCAACATCACACAGGCTCTTTTCCTCCCTT
TCATGGGCCCCAAAGTCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAATCGATGGCGG
CGATGGCGGCGATGGCGGCCTTAACAGTCGAGCCTGCTTGCGCATCCTTATGGTCGAGCGAGAAA
TCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAATCCCTCACCATCGGAATGGTGAGCC
CCTACCGGGCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGG
Right flanking sequence: Indices 551185 -- 551684
ACCTTATGGTCGAGCCCCTACCGGTGATGGCGGCCTTAACAGTCGAGCCTGCTGGCGCATCCTTA
TGGTCGAGCAATAAATTCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTTATGGTCGA
GCCCCTACCGGTCCTTACGGCATGGCCAAATTCTTAGGGTTATATTTAGCCTACGCAGGGCACTA
ACACTACACATCACTGAACTTCACTGACCCCGCTTGGGTGTGTAAAGTAGCCGTAAAACGCACGC
AAATGCCCTCTCCTTATCAGTCGAGCCTGCTTACGCATCCTTTCAGACGAGATTCCACTCTCGAT
GCATGCCTCTGGAAAACTACCGCAACATAGGCTGGCTAAAGAGAGATAGATCGAGTAAGTGAATC
GGTCTACATTGAATTATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAACCTAAACT
ACCACATGCTCATATATAACTACCACCATAACAATGACTGGTCTT
Found at i:551312 original size:24 final size:24
Alignment explanation
Indices: 551279--551331 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
551269 TCTCCCTCTC
551279 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTAAGGTCGAGCACCTAAAGGT
* * **
551303 CCTTATGGTCGAGCCCCTACCGGT
1 CCTTAAGGTCGAGCACCTAAAGGT
551327 CCTTA
1 CCTTA
551332 CGGCATGGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.25
Consensus pattern (24 bp):
CCTTAAGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 550779 -- 551278
TCGACCATAGAGTGCGCAATGATGCCATGTGTCCGCTCAGGTCCCACTCTCAACATCACACAGGC
TCTTTTCCTCCCTTTCATGGGCCCCAAAGTCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGA
GAAATCGATGGCGGCGATGGCGGCGATGGCGGCCTTAACAGTCGAGCCTGCTTGCGCATCCTTAT
GGTCGAGCGAGAAATCGATGGCGGCGATGGCGGCCCTTATGGTCGAGCGAGAAATCCCTCACCAT
CGGAATGGTGAGCCCCTACCGGGCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTG
ACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGGCCTCTCCTTAACA
GTCGAGCCCCTGCCGGACCTTATGGTCGAGCCCCTACCGGTGATGGCGGCCTTAACAGTCGAGCC
TGCTGGCGCATCCTTATGGTCGAGCAATAAATTCCTCTCCCTCTC
Right flanking sequence: Indices 551332 -- 551831
CGGCATGGCCAAATTCTTAGGGTTATATTTAGCCTACGCAGGGCACTAACACTACACATCACTGA
ACTTCACTGACCCCGCTTGGGTGTGTAAAGTAGCCGTAAAACGCACGCAAATGCCCTCTCCTTAT
CAGTCGAGCCTGCTTACGCATCCTTTCAGACGAGATTCCACTCTCGATGCATGCCTCTGGAAAAC
TACCGCAACATAGGCTGGCTAAAGAGAGATAGATCGAGTAAGTGAATCGGTCTACATTGAATTAT
ATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAACCTAAACTACCACATGCTCATATAT
AACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGCTAGGAAATCACTCTCATTAT
ATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAATTGACTTATTGGGTGGCCCCTCTC
AAATAAGTAACTAAAGGGTGGTCGAGCGATGGCGGCCTTATTAGT
Found at i:552113 original size:20 final size:20
Alignment explanation
Indices: 552082--552133 Score: 95
Period size: 20 Copynumber: 2.5 Consensus size: 20
552072 ACCTAAAGGT
552082 CCTCTCCCTCTCGATGGCGGC
1 CCTCT-CCTCTCGATGGCGGC
552103 CCTCTCCTCTCGATGGCGGC
1 CCTCTCCTCTCGATGGCGGC
552123 CCTCTCCTCTC
1 CCTCTCCTCTC
552134 CTTATCAGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 26 0.84
21 5 0.16
ACGTcount: A:0.04, C:0.50, G:0.19, T:0.27
Consensus pattern (20 bp):
CCTCTCCTCTCGATGGCGGC
Left flanking sequence: Indices 551582 -- 552081
ATTGAATTATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAACCTAAACTACCACAT
GCTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTCTCTAGCTAGGAAATCA
CTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAATTGACTTATTGGGT
GGCCCCTCTCAAATAAGTAACTAAAGGGTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCG
TACCTCACCCTGCCGGGGGCACGATGGCGGCCAGTCGAGCCTGCTTCCTTGATGCTTATTGGGTG
GTGGGCTAGATTGAGAGCAACTAAAGTTCCTCTCCTTAACAGTCGAGCCTGCTTACGCATCCTCT
CCTTAGATTGAGAGCAATTAAACCGGTTAGGGTTTGCTTATTGGGTGGGGGGGCTTATGGTCGAG
CCCCTCCGGTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGT
Right flanking sequence: Indices 552134 -- 552633
CTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCG
AGCGTGCTTACGCACCCTAAAGGGTCCTTAACGGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGT
TTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAG
CCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAG
TCGAGCCTGCTTACGCATCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGG
GGGTTTCACAGTCGAGCCTGCTTACGCATCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAAT
AAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAA
TAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAG
Found at i:552160 original size:27 final size:27
Alignment explanation
Indices: 552122--552179 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
552112 TCGATGGCGG
552122 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
552149 CCCTCTCCTCTCCTTATCAGTCGAGCC
1 CCCTCTCCTCTCCTTATCAGTCGAGCC
552176 CCCT
1 CCCT
552180 AAAGGGTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.10, C:0.50, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCTCTCCTCTCCTTATCAGTCGAGCC
Left flanking sequence: Indices 551622 -- 552121
ATTTTATGAACCTAAACTACCACATGCTCATATATAACTACCACCATAACAATGACTGGTCTTTC
TTCTCTCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGA
TTCAAGTTCAATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAGGGTGGTCGAGCGAT
GGCGGCCTTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGCACGATGGCGGCCAGTCGAGC
CTGCTTCCTTGATGCTTATTGGGTGGTGGGCTAGATTGAGAGCAACTAAAGTTCCTCTCCTTAAC
AGTCGAGCCTGCTTACGCATCCTCTCCTTAGATTGAGAGCAATTAAACCGGTTAGGGTTTGCTTA
TTGGGTGGGGGGGCTTATGGTCGAGCCCCTCCGGTCCTCTCCTCTCCTTAACAGTCGAGCACCTA
AAGGTCCTCTCCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGG
Right flanking sequence: Indices 552180 -- 552679
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACGGTCGAGCACCTAA
AGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTA
AAGGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATA
TGGTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAAGGTCGAGCACCTAAAGGTTAGG
GTTTACTTATTGGGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCATCCTCTCCTCTTGGGTTT
ACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTT
TACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGC
CTGCTTAAGCATCCTTTGGTCGAGCGGCTTCGCTCCTTTTCATCA
Found at i:552189 original size:27 final size:27
Alignment explanation
Indices: 552131--552201 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
552121 GCCCTCTCCT
*** *
552131 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
552158 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
552185 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
552202 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 551631 -- 552130
ACCTAAACTACCACATGCTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTC
TCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTC
AATTGACTTATTGGGTGGCCCCTCTCAAATAAGTAACTAAAGGGTGGTCGAGCGATGGCGGCCTT
ATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGCACGATGGCGGCCAGTCGAGCCTGCTTCCT
TGATGCTTATTGGGTGGTGGGCTAGATTGAGAGCAACTAAAGTTCCTCTCCTTAACAGTCGAGCC
TGCTTACGCATCCTCTCCTTAGATTGAGAGCAATTAAACCGGTTAGGGTTTGCTTATTGGGTGGG
GGGGCTTATGGTCGAGCCCCTCCGGTCCTCTCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTC
TCCCTCTCGATGGCGGCCCTCTCCTCTCGATGGCGGCCCTCTCCT
Right flanking sequence: Indices 552202 -- 552701
GTGCTTACGCACCCTAAAGGGTCCTTAACGGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTA
CTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCC
CCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGGGTCCTTATCAGTCG
AGCCTGCTTACGCATCCTTAAGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGG
TTTCACAGTCGAGCCTGCTTACGCATCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAG
TCAACCCTGGGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAA
GTCAACCCTGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCTGCTTAAGCATCCTTTGGTCG
AGCGGCTTCGCTCCTTTTCATCATGTCTCTTTCCATTTTAGGCAG
Found at i:552572 original size:66 final size:66
Alignment explanation
Indices: 552487--552622 Score: 272
Period size: 66 Copynumber: 2.1 Consensus size: 66
552477 TGCTTACGCA
552487 TCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAG
1 TCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAG
552552 G
66 G
552553 TCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAG
1 TCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAG
552618 G
66 G
552619 TCCT
1 TCCT
552623 TATCAGTCGA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.21, C:0.34, G:0.18, T:0.28
Consensus pattern (66 bp):
TCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAAG
G
Left flanking sequence: Indices 551987 -- 552486
AATTAAACCGGTTAGGGTTTGCTTATTGGGTGGGGGGGCTTATGGTCGAGCCCCTCCGGTCCTCT
CCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCCTCTCGATGGCGGCCCTCTCCTCTCGAT
GGCGGCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAA
AGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTAACGGTCGAGCACCTAAAG
GTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTGGGTCGAGCACCTAAA
GGTCCTTATCAGTCGAGCCCCCTAAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATG
GTGAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTAAGGTCGAGCACCTAAAGGTTAGGGT
TTACTTATTGGGTTGGGGGGTTTCACAGTCGAGCCTGCTTACGCA
Right flanking sequence: Indices 552623 -- 553122
TATCAGTCGAGCCTGCTTAAGCATCCTTTGGTCGAGCGGCTTCGCTCCTTTTCATCATGTCTCTT
TCCATTTTAGGCAGGATGGACGGGTGCTCGATGAAATGAAGGGAGGGCCGGGAAAAAGGTAACCT
GCGTTAGCTTTGGTTCCCCAGTTCAGGGTATCGTTCGGGTATTATCTATCATGAGCCTACTCAGA
ACTAGCTGATTCTCGCATTTATGAGATCCCGAGTCTCCAAGTGGGCCCTCTTGGCCACCCACGGC
CCTGGCTTTTTGGGGAATCCTGCTCCTGTGTCGCTTGTAGCTCGGCGGTCCACCGGGTTTTTTCT
CCAGTTCCGAGTGTATTCTTGGATAGTTATAGCGGCCCATAGGCGCAAGATGTACCTTGTGGGGG
CGGCCGGGACCCTGGACATAGTCCTTTCAGACAGTGGCCGTTTAGTCCATGGTCCATTGGATGTT
CGGTGCAAGGCCAAAAATTGGAACACACTGCCCGAAACGTTCCCG
Found at i:556206 original size:33 final size:33
Alignment explanation
Indices: 556164--556303 Score: 280
Period size: 33 Copynumber: 4.2 Consensus size: 33
556154 AATGGGAAAT
556164 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
1 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
556197 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
1 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
556230 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
1 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
556263 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
1 TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
556296 TCCTCTCC
1 TCCTCTCC
556304 CTCACCCAAG
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 107 1.00
ACGTcount: A:0.17, C:0.35, G:0.14, T:0.34
Consensus pattern (33 bp):
TCCTCTCCTTATCAGTCGAGTCATGCTTACGCA
Left flanking sequence: Indices 555664 -- 556163
CTGTGTATCGAAAGGCGGGGCAGCACAGCCAGCCGGGGGTTTTTACGTCCAGTATGTCCCCCCCC
TTATTCCCGACATGCTATGGTGCCCAGGGTAGTTCCCATAGAGCGAGTCGAGTCCGTATCGCCGC
GGAGCAACTGCAGCGTCCGGATCGAATCCATCTACTCGGCGATTCATCCGGTGACTTCACGGTCG
CCAAAGGAGCCCCAAGAAGCATCAAACATTTCAGAGAAGATCCGTGGAGCAATTTTTAGATAGCA
AGCACTAGCTCCCGGTGCAACTTCATGAGAAGCAGTCAAGGATAAGATAGAAGATAATGAAACGC
ACGTGGTGGTTACTATGGCGGTTCCTTCTGAACCTAGAAAACGTCCGAAAGCACCTGCTACGGAA
CTACCGAGCAAGGGCAACGATACTATGAGTAAATACATAAAATCGAATATGGGGACAACCAAGAA
TCAAGCAATTACGGAGCGGCCTGTGATTGAGCAAAAATGGGAAAT
Right flanking sequence: Indices 556304 -- 556803
CTCACCCAAGGGATTGGGGTGAGCGTTAACACCCTTTGGTTAAGAAAAGATTTGGTAAGTGAGAA
CCTGATCTTCGACAATGCTGCTATTATATATGTCATTATGGTCATTACCGCTAGGGGCAAGGCAA
TATAGAGTTTGAAGGGGTAAGTTATTCAACCGCGCTTTGCTTTGGGCGGGTAAGAGAGGCACATT
ATAGATAATGCTGCGGAACTCAAATACTTGGTAAACTTGAATGGGCCAGATTATGTGACCAGTAG
AGGAGCCTTTTGATTAGGGTTGAAAGCGATCGTGACCAAGATGCAGCAGATCCATATTCAGATTT
TCCAAAGCCAGATGCATAAGAACCTACAGAAGCACCAGTAGCAGTTGATTCCGTTGATTCTTCTC
TTTATTTCGATTATGCAGTTGACTATGATCTTTAATAAGCACTTCATAAAGCAAAGGCAGAAGCA
CTTACATCCGACCTTTAGAAGAACGAATAGGGCACCTGCTAGTTG
Found at i:557768 original size:15 final size:15
Alignment explanation
Indices: 557748--557786 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
557738 GTCTATTGGT
557748 CTGTAGGGTCTTATC
1 CTGTAGGGTCTTATC
557763 CTGTAGGGTCTTATC
1 CTGTAGGGTCTTATC
557778 CTGTAGGGT
1 CTGTAGGGT
557787 ATGGCTCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.13, C:0.18, G:0.31, T:0.38
Consensus pattern (15 bp):
CTGTAGGGTCTTATC
Left flanking sequence: Indices 557248 -- 557747
GGCTATGGCACTCCAAAGAGTCAAAGATGAAAGGTAGGGTAGTGGCTTTCTAACAAACGATCCGG
ACAGGAATGCGCGTGCACCTGGGGCTTTATCTACATCTACAAACTCCACTAGGCGCTTAGCAACC
TTTTCAACTACTCGATCTGGTCCTGCTCCTGGAACATACGGCTCTGAATACCGATCACGCTCACG
AGCATCTTAATTACCACCATGAGCATCCCACTTTTCATATCCATAAACCGCCTTAGCTCCTAGGT
CAGAAACTGCTATTACCACTATGACTCCAGCTACATATTGATCCGCTACTGGTGCTGCTGGTTCA
TCGACTGGATCAACTTACTATTAGGAATCAACTGCTTCATATACTGTGAAAAAAGTGGTGCTGCT
TCTTCAACAGAAGACAATTTGCTGGATCGACTGAATCCACTGCATCAATAGAATCGACTGTTGCT
TCTTTACGATCAATAACTGGTCCTGGTTCTGTAGGGTCTATTGGT
Right flanking sequence: Indices 557787 -- 558286
ATGGCTCTGTAGAGTCTGGTCATATCCATGGCATCAACAGCTCGCTTACCATGTCCGGTGCCAGA
TGCTTAATCAATGGCAGAATCAAAAGAATCAACGACAGAAGAAACTGGTGAATTCTCAGAATCAA
TTGCTGAATCAACTACTTAATCAACCGGAGAAACTTCTGCTGAGTCAACAACTGAATCCACCACT
GCTCAATCAACTGCTCCATCAACAGCATAACCAACTGATCGGAAGAAGGATTGGAAGGTCCCGGA
GGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGA
CAGGGGGCTCGACTGATAAGGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTA
AACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAG
GTGCTCGACTGTTAAGGAGAGGAGAGGATGCGTAAGCAGGCTCGA
Found at i:558218 original size:25 final size:25
Alignment explanation
Indices: 558184--558259 Score: 143
Period size: 25 Copynumber: 3.0 Consensus size: 25
558174 GTAAACCCTA
558184 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
558209 ACCTTTAGGTGCTCGACTGATAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
*
558234 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACTGATAAGG
558259 A
1 A
558260 GAGGAGAGGA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACTGATAAGG
Left flanking sequence: Indices 557684 -- 558183
AATAGAATCGACTGTTGCTTCTTTACGATCAATAACTGGTCCTGGTTCTGTAGGGTCTATTGGTC
TGTAGGGTCTTATCCTGTAGGGTCTTATCCTGTAGGGTATGGCTCTGTAGAGTCTGGTCATATCC
ATGGCATCAACAGCTCGCTTACCATGTCCGGTGCCAGATGCTTAATCAATGGCAGAATCAAAAGA
ATCAACGACAGAAGAAACTGGTGAATTCTCAGAATCAATTGCTGAATCAACTACTTAATCAACCG
GAGAAACTTCTGCTGAGTCAACAACTGAATCCACCACTGCTCAATCAACTGCTCCATCAACAGCA
TAACCAACTGATCGGAAGAAGGATTGGAAGGTCCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAA
CGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGACAGGGGGCTCGACTGATAAGGATGCGC
AAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTA
Right flanking sequence: Indices 558260 -- 558759
GAGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCC
CTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGT
TGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAA
GGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAG
GAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCA
TCGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCCACCACCCAATAAGCATCAAGGGGCAT
TTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGGCTCCGTGTTGGGCCCTGCGTAGACCT
AAGAATTGGTCATTCTTTATATATGTCATTATTGACCGATAAGAT
Found at i:558518 original size:27 final size:27
Alignment explanation
Indices: 558501--558558 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
558491 AGGACCCTTT
* *
558501 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
558528 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
558555 AGGG
1 AGGG
558559 CCGCCATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.50, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 558001 -- 558500
CAACAGCATAACCAACTGATCGGAAGAAGGATTGGAAGGTCCCGGAGGGGCTTGCGCTTCCTAGT
GCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGACAGGGGGCTCGACTGATAA
GGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTAAACCCTAACCTTTAGGTGC
TCGACTGATAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGAG
AGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCC
TAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTT
GACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 558559 -- 559058
CCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCC
ACCACCCAATAAGCATCAAGGGGCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGG
CTCCGTGTTGGGCCCTGCGTAGACCTAAGAATTGGTCATTCTTTATATATGTCATTATTGACCGA
TAAGATGGCGGAGGTTTTGAATAGTTACAGCCCACTAGCTTAGGAGGTTCCCCAACCAACCAAGA
GTATGCTTATTTACCTACGTGCTCAACCACCTTTTAGTACATTCCAGTTTGACCACTACTTCCAT
TTTGAGATCCTGCTTTGACACCACGAGATACACCTTAACCTCCATATGAGACAGCTTACCTAGTT
ATTCTTTTACCCTTGAAGCAGTCCCTGTTAGTTTTGTTTTGAAGCTATGGTGTAAAGCAAAAGAA
AAGTAGGTAAGATGATTTGGTAAGACCTAATAGTAAGTGGGAGCT
Found at i:558572 original size:20 final size:20
Alignment explanation
Indices: 558547--558597 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
558537 GACTGATAAG
558547 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
558567 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
558587 GAGAGGAGAGG
1 GAGAGGAGAGG
558598 ATGCGGAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.49, T:0.04
Consensus pattern (20 bp):
GAGAGGAGAGGGCCGCCATC
Left flanking sequence: Indices 558047 -- 558546
GGGGCTTGCGCTTCCTAGTGCAAGGAACGTAGTGCTTGCTTGACGTTAGGAAAGCAAGGACCCGA
CAGGGGGCTCGACTGATAAGGATGCGCAAGCAGGCTCGACTGTTAACCCCCCAAACCAATAAGTA
AACCCTAACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAG
GTGCTCGACTGTTAAGGAGAGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCAT
ATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTT
AGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTT
TAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTA
GGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAG
Right flanking sequence: Indices 558598 -- 559097
ATGCGGAGCACGCTCGACCACCGCCCACCACCCAATAAGCATCAAGGGGCATTTGCGTGCGTTTT
ACGGCTACTTGACACGCCCAAGCGGGCTCCGTGTTGGGCCCTGCGTAGACCTAAGAATTGGTCAT
TCTTTATATATGTCATTATTGACCGATAAGATGGCGGAGGTTTTGAATAGTTACAGCCCACTAGC
TTAGGAGGTTCCCCAACCAACCAAGAGTATGCTTATTTACCTACGTGCTCAACCACCTTTTAGTA
CATTCCAGTTTGACCACTACTTCCATTTTGAGATCCTGCTTTGACACCACGAGATACACCTTAAC
CTCCATATGAGACAGCTTACCTAGTTATTCTTTTACCCTTGAAGCAGTCCCTGTTAGTTTTGTTT
TGAAGCTATGGTGTAAAGCAAAAGAAAAGTAGGTAAGATGATTTGGTAAGACCTAATAGTAAGTG
GGAGCTGTTGAAAGGGCATGAGCAGAAGAGGTAGGTCTAAAGGGT
Found at i:562162 original size:20 final size:20
Alignment explanation
Indices: 562137--562181 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
562127 TCCCACCCGG
* * *
562137 AGGTAAAGTTTCCTAGGCGT
1 AGGTAAAGTTACCAAGGCAT
562157 AGGTAAAGTTACCAAGGCAT
1 AGGTAAAGTTACCAAGGCAT
562177 AGGTA
1 AGGTA
562182 TGAGGCGGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (20 bp):
AGGTAAAGTTACCAAGGCAT
Left flanking sequence: Indices 561637 -- 562136
TTCCTGGCCCACTAGCAGCAGTTTCAGATCCTCCAGCAGAAGTTGAGTCAGTCGAATCAGCCAGC
AAGCAATCAAGTAAGCCCGGTTCTTTCTTATCCCAGCCATCCAGGGGTTGTCTCTTTCTATGGAT
CGTACCAGAATCTCGTATATAGAGAGAGTCTAAATTAGGCCTTGATTTCTTCGGGTGTCAAGTTT
CATTTTACTTATTGGCCCCCCCAAATAAGTAAAAAAAAGAGTCGAGCCCCTCTCCTTGACAGTCG
AGTGTGCTTACGCACCCTGCCGGTCCTTCATTTTACTTATTGGGTGGGGGGGCCCACTCTTTCAC
CTCACCTTTGTTTCATATGCCACGGATACTTTTCTTTAGTGGGGCGTACCAAGAAGTCAGTATGT
ATGGTTGTAAGTTCCCAAGGAGTAGGTATGATGCATAGGTTGTTACAAAGTCTAGTCCAAAGGAG
GGCATAGGGTGTAGGTATGAGTGTACCAGGGCTAGTCCCACCCGG
Right flanking sequence: Indices 562182 -- 562681
TGAGGCGGAGATTTCCAAGTACGTAGTTGAATTCTGGAGGTCTCAAGGACATAGGCTTAAGGGTC
TAGGGAGTTTTTGAAGTATAGTTCCCATGATAGCATTATATACGTGAATATCCCAAACACAATAA
GTTAAGCACCACCCACCTTCCTAACACGACTTGGCTTCTTATTCTTTTTCTTTGCCTGTCGATAG
AAGAAGGAATGTCACATTTGCGGGTGCACGATTGCGGGGCTGGTTAGGCGTTATCGGCGTGGCTT
GTTAGGCGTTATCGGCTGGTTAGGCGAGCTGCGCTGGCCATCTTAACGCTTAACGCTAGGTAGAT
TCGCCCCATCCATGTAGGTTCTTAACGCCCTAGCTAGTAGGTTAGATCCTGGAGCTGCGGAACTC
ACTACTCTATTAGAAAGGATAATTACCAACCAATCGATAGGGAATGTAACTTACCGCGATGGCTC
CGCCCACTCCTTACCGCGCTTGATGGACGATGGATGGAGGGACTA
Found at i:562445 original size:23 final size:23
Alignment explanation
Indices: 562414--562457 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
562404 ACGATTGCGG
562414 GGCTGGTTAGGCGTTATCGGCGT
1 GGCTGGTTAGGCGTTATCGGCGT
*
562437 GGCTTGTTAGGCGTTATCGGC
1 GGCTGGTTAGGCGTTATCGGC
562458 TGGTTAGGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.09, C:0.18, G:0.41, T:0.32
Consensus pattern (23 bp):
GGCTGGTTAGGCGTTATCGGCGT
Left flanking sequence: Indices 561914 -- 562413
TGCCGGTCCTTCATTTTACTTATTGGGTGGGGGGGCCCACTCTTTCACCTCACCTTTGTTTCATA
TGCCACGGATACTTTTCTTTAGTGGGGCGTACCAAGAAGTCAGTATGTATGGTTGTAAGTTCCCA
AGGAGTAGGTATGATGCATAGGTTGTTACAAAGTCTAGTCCAAAGGAGGGCATAGGGTGTAGGTA
TGAGTGTACCAGGGCTAGTCCCACCCGGAGGTAAAGTTTCCTAGGCGTAGGTAAAGTTACCAAGG
CATAGGTATGAGGCGGAGATTTCCAAGTACGTAGTTGAATTCTGGAGGTCTCAAGGACATAGGCT
TAAGGGTCTAGGGAGTTTTTGAAGTATAGTTCCCATGATAGCATTATATACGTGAATATCCCAAA
CACAATAAGTTAAGCACCACCCACCTTCCTAACACGACTTGGCTTCTTATTCTTTTTCTTTGCCT
GTCGATAGAAGAAGGAATGTCACATTTGCGGGTGCACGATTGCGG
Right flanking sequence: Indices 562458 -- 562957
TGGTTAGGCGAGCTGCGCTGGCCATCTTAACGCTTAACGCTAGGTAGATTCGCCCCATCCATGTA
GGTTCTTAACGCCCTAGCTAGTAGGTTAGATCCTGGAGCTGCGGAACTCACTACTCTATTAGAAA
GGATAATTACCAACCAATCGATAGGGAATGTAACTTACCGCGATGGCTCCGCCCACTCCTTACCG
CGCTTGATGGACGATGGATGGAGGGACTATTCAGTGCGGAAATATAGAAACTATATCTCTATCAG
CGCTCTCTATTTAGAGAAAGCTGGCCAATCCCCCTTATGAAATAATCTACATGAGGGTAGGTATA
TTCTACTGCCCCTCCCCACCCCAGCCAACATCTATTTCACTCGCCTACCATGAATCTCCTACCAG
AGCTTCCTAAGGAAGGTAAAACGTCTATGTAAGGTTCCGCGGACTACCTTTTCCCCGAACCATTC
ATGCATGAGTAGAACGAGGTAGGGTGCCCCTCTAAGGGCAGAACC
Found at i:562463 original size:18 final size:18
Alignment explanation
Indices: 562414--562467 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 18
562404 ACGATTGCGG
562414 GGCTGGTTAGGCGTTATC
1 GGCTGGTTAGGCGTTATC
562432 GGCGTGGCTTGTTAGGCGTTATC
1 GGC-T-G---GTTAGGCGTTATC
562455 GGCTGGTTAGGCG
1 GGCTGGTTAGGCG
562468 AGCTGCGCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
18 11 0.35
19 1 0.03
20 1 0.03
21 1 0.03
22 1 0.03
23 16 0.52
ACGTcount: A:0.09, C:0.17, G:0.43, T:0.31
Consensus pattern (18 bp):
GGCTGGTTAGGCGTTATC
Left flanking sequence: Indices 561914 -- 562413
TGCCGGTCCTTCATTTTACTTATTGGGTGGGGGGGCCCACTCTTTCACCTCACCTTTGTTTCATA
TGCCACGGATACTTTTCTTTAGTGGGGCGTACCAAGAAGTCAGTATGTATGGTTGTAAGTTCCCA
AGGAGTAGGTATGATGCATAGGTTGTTACAAAGTCTAGTCCAAAGGAGGGCATAGGGTGTAGGTA
TGAGTGTACCAGGGCTAGTCCCACCCGGAGGTAAAGTTTCCTAGGCGTAGGTAAAGTTACCAAGG
CATAGGTATGAGGCGGAGATTTCCAAGTACGTAGTTGAATTCTGGAGGTCTCAAGGACATAGGCT
TAAGGGTCTAGGGAGTTTTTGAAGTATAGTTCCCATGATAGCATTATATACGTGAATATCCCAAA
CACAATAAGTTAAGCACCACCCACCTTCCTAACACGACTTGGCTTCTTATTCTTTTTCTTTGCCT
GTCGATAGAAGAAGGAATGTCACATTTGCGGGTGCACGATTGCGG
Right flanking sequence: Indices 562468 -- 562967
AGCTGCGCTGGCCATCTTAACGCTTAACGCTAGGTAGATTCGCCCCATCCATGTAGGTTCTTAAC
GCCCTAGCTAGTAGGTTAGATCCTGGAGCTGCGGAACTCACTACTCTATTAGAAAGGATAATTAC
CAACCAATCGATAGGGAATGTAACTTACCGCGATGGCTCCGCCCACTCCTTACCGCGCTTGATGG
ACGATGGATGGAGGGACTATTCAGTGCGGAAATATAGAAACTATATCTCTATCAGCGCTCTCTAT
TTAGAGAAAGCTGGCCAATCCCCCTTATGAAATAATCTACATGAGGGTAGGTATATTCTACTGCC
CCTCCCCACCCCAGCCAACATCTATTTCACTCGCCTACCATGAATCTCCTACCAGAGCTTCCTAA
GGAAGGTAAAACGTCTATGTAAGGTTCCGCGGACTACCTTTTCCCCGAACCATTCATGCATGAGT
AGAACGAGGTAGGGTGCCCCTCTAAGGGCAGAACCCAAAGAGTAA
Found at i:565336 original size:18 final size:18
Alignment explanation
Indices: 565315--565349 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
565305 GATCGAGAGC
565315 CATATGTCATACGAAAGT
1 CATATGTCATACGAAAGT
565333 CATATGTCATACGAAAG
1 CATATGTCATACGAAAG
565350 CCATGTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (18 bp):
CATATGTCATACGAAAGT
Left flanking sequence: Indices 564815 -- 565314
CAATTGTCCTCTCCCGGTGGTCGAGCCATGCTTCGCATCCTCAATTATTCTATAAGCTGTGCTTC
TCAGCTTTCAAATGGCAACAAGGAGATTCGAGTTGAGTTCCCTTCTCTTAGAATGGTTTTATTCA
CGTCGCTTTCAAAGTAAGGGTAAGGGCCCCTTTTAGAACGGGAATCTCGTATCTCCGGAAGTTGT
ATCAACCCGAAACTATAGAAGTGGGCACATCACATTACACAAAAAGGGGGAAGTGGCCTTTTCGA
TCATGCAAGCCTGGCCTTAAATAATAATAATAGGGGGCGAACACCCCTTAAATCAAAATAGTAGG
CAGCTTCATATTCCTATCCTGTTCGGTGCATTCCATTCCAACCCGGCCAGGGTTGATTCAATTTC
TCTTGATCCAGCCTTCGCAGAACCATTTGTTGATCCAGTCGATGAAGCAAAGGCAGGAGCACAGC
CAGGATCAGAAGCAAAGATCCCATTACCATAGCCAGATCGAGAGC
Right flanking sequence: Indices 565350 -- 565849
CCATGTATGTTCAGCATAGCGCCAAACAGGCTAAGCGTGAAACACAGGCTAAGCGACCCAAGGTA
TTAAGTGTAAGCGGGTTCTTAGGACCACTATAGGCGGAAGAAAAGCCCATAGCAATAGAAAGCAG
GACAGCCAATCGCCAACCTCCATCCAAGCACAGCCTATAAGAGCAGCCCCAAGGTAAGACTAGTC
AGAACTAGCTGCTGCTACCAACACGAATGTGATAAGACCAGTTTCCCATCCATCAGAAGCATAGG
AGGTAGAGCTAGTTTACTTTGTTTACCCGGAATCAGTGAATGCGCCAGTTTATGGTGCCAGTGAA
GCAGCACCCGTTTCAGTTCGAAAGCTAGTAGTTTCAGATCCTTCCGTTCGAGAGTAAGAGGCGGC
TAGAGCATATAGGCACAGGTGGTCGGGGCAAAGGCGGATACAGATGCAGCAAAGTCAGTATACAA
GGTAGAAACAGAACCATTTGACCCCGAAGTTTGGGTTTTATATCC
Found at i:578627 original size:26 final size:26
Alignment explanation
Indices: 578596--578645 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
578586 GGGGCGGAGC
578596 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCATATGGTGAGGGGT
578622 CACTCACTATTCATATGGTGAGGG
1 CACTCACTATTCATATGGTGAGGG
578646 TTATTAGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
CACTCACTATTCATATGGTGAGGGGT
Left flanking sequence: Indices 578096 -- 578595
CAAGAGCTTATACACGTGCTTAAACAAGGTAAACTAGGTACGATGCTACTGGTCCTACTTATTGG
TCGACAGAATCAACAGCTTAATCTAATGGTGGTTAAGCTGCTACTACTGGGCTGGACCCGGATAT
CATTAGCTCAGCCCAACTAGGAAGAGATGTTCAAACCTCCGCCTCCTGAAAATGGCCAAATTAGT
AGGATGCGTAAGCATGCTCGACTGTTAAGGCCGCCATCGTGCCCCCGGCAGGGTGAGGTACGAAC
GCTCGACTAATAAGGCCGCCATCGCTCGACCAACGGGAGAGGGAAAGATGTTCAAACCTCCGCCA
AGGATGCGTAAGCAGGCTCGACTGTGAAAGGAGAGGATGCGAAAGCACGCTCGACCACCCTTTAG
TTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGAAACTCCCGCCATCGTTTTCACGCTCA
CTCATCATATGGGTGAGGGCCCTTACTTCTTCATAGGGGCGGAGC
Right flanking sequence: Indices 578646 -- 579145
TTATTAGATAGAATTTACCACCCCAATACGCTAGGAGAGGAGGTAGTAAGGGAAAATAAGCCTTC
TTACCCGTACTCATTCAGCTAATCAAGTCAGTCAGAAAGGAGGAGGTTTCATTCACCTACTTAAG
AAGCTAAGAAGGTTGGGAAAAGGAGGTAGTAGTTGGAAGAAGACTCACCTACTTATTCAGCCTCA
CATAGAAGGTTTCACTCACCTACCTACTTAGAAGGCTTATAGGGAAGGTATAGTAGAAGCCTATC
CTTACCCACTATCTAAGAAGGTTTCACTCATCTACCCACTCATCTAATTAAGAAGCTTAGAAGGA
GAGGTAGTAGTTGGAAGGAATAAGACTGAAGAGAAAAGAGATAAAGACAAGCTCCGACTTAAGCT
AAGGAGGGAAGGCAGGACCACAGCTAAGGTCTGGCTTAAGCTTTAAACAACTATCTGTCTGTAGC
TCCGTAGCTTTATAGCTCTGAGCTATGTCCGGGCCCACTCCAAAT
Found at i:580743 original size:38 final size:38
Alignment explanation
Indices: 580700--580849 Score: 149
Period size: 38 Copynumber: 3.7 Consensus size: 38
580690 GTTTAGCAGA
580700 CAATGCATATATGGGCATATGTCATTACGCTTTCTTAT
1 CAATGCATATATGGGCATATGTCATTACGCTTTCTTAT
* * **
580738 CAATGCATATATGGGCATCAGAAAATGGCAAATATTACGGTTTAGCAGA-
1 CAATGCATATATGGGCAT------ATGTC----ATTACGCTTT--CTTAT
580787 CAATGCATATATGGGCATATGTCATTACGCTTTCTTAT
1 CAATGCATATATGGGCATATGTCATTACGCTTTCTTAT
580825 CAATGCATATATGGGCATATGTCAT
1 CAATGCATATATGGGCATATGTCAT
580850 AATTACATAT
Statistics
Matches: 91, Mismatches: 8, Indels: 26
0.73 0.06 0.21
Matches are distributed among these distances:
37 2 0.02
38 43 0.47
39 9 0.10
43 4 0.04
44 4 0.04
48 9 0.10
49 18 0.20
50 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (38 bp):
CAATGCATATATGGGCATATGTCATTACGCTTTCTTAT
Left flanking sequence: Indices 580200 -- 580699
AGCGGCCTCAGGAAAGAACCCTCAGGAAAGCGTAAGCGGGGTCAACAGCGGAGCGGGGGATATAT
TAGATAGCTTAGAGCTCCCTCACTTTAGGGGGAGGCTCAACCACCGTCCCTACTCCTCATCAAAC
TAGGAATCAGAGAGAGATTGAAAGGCCTTATGCCATGTAGCGTATATAATATCATCAGAAAAAAA
GATCTATTATATATGTCATTACGCATCAAAACCTCCGCCTCCTAAAATGGCAAGAATAGGCCCGG
TAGGGACTCACTATTCATATGGTGAGGACCTTTAGGTGCTCGACCAAAAGCCCCCCCACCCAATA
AGTAAATTGAGAGAAAGATGTTCAAACCTCCGCCTCCTCTCCTCTCCCTTATGGTCGAGCACCTA
AAGGTCCTTATCAGTCGAGCCTGCTTGTGCATCCTGAAAATGGCAAAATAGGAGCTAAAAGTTCA
AAAAGCTCCGCCAAGAGAAAATGGCAAATATTACGGTTTAGCAGA
Right flanking sequence: Indices 580850 -- 581349
AATTACATATATAAAGAATGACCAACGGGAAAGGACATTCTTGCTCGATGACCGGGGAGAGTGAG
AGGATGCTACACCTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAGAATGACC
AACGGGAAAGGACATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACAGCAGGCTCGACC
AACGCTAGTTACTTATTTGAGAGCCCAATAAGTAAATTGAAATTGGAAGCTTGCTTGACGTTAGG
AAAGCAAGGAACGTAGTCGCTTGCTCGACAAAAGGAGAGCAAGGGTGAGCCAGCCGAACTCTCGA
CAATAGGCCCGAAGGGTGCGTTAGCACACTCGACTAAAAAGCCCGACTCGGCCGAGGAGGTCGAG
GAGAGGGAAAGATGTTCAAACCTCCGCGTTATTGGGTGGGGGTGAGCAAGCGAACTCTCGACAAG
GGGGGCCGCCATCGAAATGAACAAAACTCGGAGTTCAATTAGCCA
Found at i:580816 original size:87 final size:87
Alignment explanation
Indices: 580670--580842 Score: 346
Period size: 87 Copynumber: 2.0 Consensus size: 87
580660 CTCCGCCAAG
580670 AGAAAATGGCAAATATTACGGTTTAGCAGACAATGCATATATGGGCATATGTCATTACGCTTTCT
1 AGAAAATGGCAAATATTACGGTTTAGCAGACAATGCATATATGGGCATATGTCATTACGCTTTCT
580735 TATCAATGCATATATGGGCATC
66 TATCAATGCATATATGGGCATC
580757 AGAAAATGGCAAATATTACGGTTTAGCAGACAATGCATATATGGGCATATGTCATTACGCTTTCT
1 AGAAAATGGCAAATATTACGGTTTAGCAGACAATGCATATATGGGCATATGTCATTACGCTTTCT
580822 TATCAATGCATATATGGGCAT
66 TATCAATGCATATATGGGCAT
580843 ATGTCATAAT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (87 bp):
AGAAAATGGCAAATATTACGGTTTAGCAGACAATGCATATATGGGCATATGTCATTACGCTTTCT
TATCAATGCATATATGGGCATC
Left flanking sequence: Indices 580170 -- 580669
GGGCGCCCAGGAACCACCTATTGAATTGATAGCGGCCTCAGGAAAGAACCCTCAGGAAAGCGTAA
GCGGGGTCAACAGCGGAGCGGGGGATATATTAGATAGCTTAGAGCTCCCTCACTTTAGGGGGAGG
CTCAACCACCGTCCCTACTCCTCATCAAACTAGGAATCAGAGAGAGATTGAAAGGCCTTATGCCA
TGTAGCGTATATAATATCATCAGAAAAAAAGATCTATTATATATGTCATTACGCATCAAAACCTC
CGCCTCCTAAAATGGCAAGAATAGGCCCGGTAGGGACTCACTATTCATATGGTGAGGACCTTTAG
GTGCTCGACCAAAAGCCCCCCCACCCAATAAGTAAATTGAGAGAAAGATGTTCAAACCTCCGCCT
CCTCTCCTCTCCCTTATGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCTGCTTGTGCATCCT
GAAAATGGCAAAATAGGAGCTAAAAGTTCAAAAAGCTCCGCCAAG
Right flanking sequence: Indices 580843 -- 581342
ATGTCATAATTACATATATAAAGAATGACCAACGGGAAAGGACATTCTTGCTCGATGACCGGGGA
GAGTGAGAGGATGCTACACCTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAG
AATGACCAACGGGAAAGGACATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACAGCAGG
CTCGACCAACGCTAGTTACTTATTTGAGAGCCCAATAAGTAAATTGAAATTGGAAGCTTGCTTGA
CGTTAGGAAAGCAAGGAACGTAGTCGCTTGCTCGACAAAAGGAGAGCAAGGGTGAGCCAGCCGAA
CTCTCGACAATAGGCCCGAAGGGTGCGTTAGCACACTCGACTAAAAAGCCCGACTCGGCCGAGGA
GGTCGAGGAGAGGGAAAGATGTTCAAACCTCCGCGTTATTGGGTGGGGGTGAGCAAGCGAACTCT
CGACAAGGGGGGCCGCCATCGAAATGAACAAAACTCGGAGTTCAA
Found at i:581006 original size:107 final size:107
Alignment explanation
Indices: 580820--581032 Score: 426
Period size: 107 Copynumber: 2.0 Consensus size: 107
580810 ATTACGCTTT
580820 CTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAGAATGACCAACGGGAAAGGA
1 CTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAGAATGACCAACGGGAAAGGA
580885 CATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACAC
66 CATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACAC
580927 CTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAGAATGACCAACGGGAAAGGA
1 CTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAGAATGACCAACGGGAAAGGA
580992 CATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACA
66 CATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACA
581033 GCAGGCTCGA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (107 bp):
CTTATCAATGCATATATGGGCATATGTCATAATTACATATATAAAGAATGACCAACGGGAAAGGA
CATTCTTGCTCGATGACCGGGGAGAGTGAGAGGATGCTACAC
Left flanking sequence: Indices 580320 -- 580819
CTCATCAAACTAGGAATCAGAGAGAGATTGAAAGGCCTTATGCCATGTAGCGTATATAATATCAT
CAGAAAAAAAGATCTATTATATATGTCATTACGCATCAAAACCTCCGCCTCCTAAAATGGCAAGA
ATAGGCCCGGTAGGGACTCACTATTCATATGGTGAGGACCTTTAGGTGCTCGACCAAAAGCCCCC
CCACCCAATAAGTAAATTGAGAGAAAGATGTTCAAACCTCCGCCTCCTCTCCTCTCCCTTATGGT
CGAGCACCTAAAGGTCCTTATCAGTCGAGCCTGCTTGTGCATCCTGAAAATGGCAAAATAGGAGC
TAAAAGTTCAAAAAGCTCCGCCAAGAGAAAATGGCAAATATTACGGTTTAGCAGACAATGCATAT
ATGGGCATATGTCATTACGCTTTCTTATCAATGCATATATGGGCATCAGAAAATGGCAAATATTA
CGGTTTAGCAGACAATGCATATATGGGCATATGTCATTACGCTTT
Right flanking sequence: Indices 581033 -- 581532
GCAGGCTCGACCAACGCTAGTTACTTATTTGAGAGCCCAATAAGTAAATTGAAATTGGAAGCTTG
CTTGACGTTAGGAAAGCAAGGAACGTAGTCGCTTGCTCGACAAAAGGAGAGCAAGGGTGAGCCAG
CCGAACTCTCGACAATAGGCCCGAAGGGTGCGTTAGCACACTCGACTAAAAAGCCCGACTCGGCC
GAGGAGGTCGAGGAGAGGGAAAGATGTTCAAACCTCCGCGTTATTGGGTGGGGGTGAGCAAGCGA
ACTCTCGACAAGGGGGGCCGCCATCGAAATGAACAAAACTCGGAGTTCAATTAGCCAGAACCTCC
GCCAAGGTGATAAGCCAAAAGAAGAGGCTTTCAAAACCTCCGCCATTGAAGTGCCGCCAAGGGAA
AGAAGGTTCCTTATGAGGGAAAGGAGATTCAAAGCTCCGCGAACAACAACCCTCTTATCTTCTTA
CTGTCCCTAGGAGAGAAAGTGTTGCCCTAACCCATTGATGAAGCA
Found at i:582220 original size:18 final size:18
Alignment explanation
Indices: 582199--582233 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
582189 GAAGGTACTA
*
582199 TGTGCAGGGAGTGAATGT
1 TGTGCAGGGAATGAATGT
*
582217 TGTGCAGTGAATGAATG
1 TGTGCAGGGAATGAATG
582234 GCTTAAGTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.40, T:0.29
Consensus pattern (18 bp):
TGTGCAGGGAATGAATGT
Left flanking sequence: Indices 581699 -- 582198
CCCCCTTACCCTTTCTTACTACCCTCAACCTAGGACATGGAGTGATGCCCAACCCATTACCCTTC
TATAAGGAACCGATCAACCAACCTTGATTTAGAGAGTACTGCCTGCCCAACCCGTTTATGAAGCC
AGGAATTGAAGTAGGGTACAACATCTATGAACCTTTGACTTACGAGCATCCACCAGATACTTGAC
TTACCACTCCCTTCAACAAACCGGTTATTAAGCGCTGCCTGCCCTTGTCTGGTTACATACAAGCG
ATATACATTCCTTACCCAACCACACTTTGACCTTATGCCAGCCAGTCAGGAGGGGCATTAAGGGG
AAAAGAAACCCAGATCCATGCCAGGTTTCATCGCCTTAAGGTCCTTGTTGATAGCCAATAGCCGC
TAGTCTTTGCCAGGATTTATTGCTAGTCATTAACAGAAGGTCAGTCATATACATACAGAGACATA
CCCGAGAAAGAAAGAAGGAGGCCCCCATACCCCGGGAAGGTACTA
Right flanking sequence: Indices 582234 -- 582733
GCTTAAGTGAATCAATTCTTTGTGCTTTTAGTGGCTTCTTTGAATCTTCTATATGGATATGTGCT
TTCAACTATGTGCCCGGGGCGGGGTGCACAGAATACCCATACAGGGTGGATGAGGGATGCTGCAG
TGAAAGAATTGATTCATCGATGCTTATTTTCGTTGATTTACAATTTGAGGTTCCGACAGAAGCCC
AAAGGCATAAGGTTATGCAAAAGTGAGTGGCCTTGGACTGGTCAATTCGCTAGTCAAAAGGTGGC
CTATGGCAATATACCTATTGGATAAAAGTTCACATTTTCCTCTCCTTATCAGTCGAGCCCCCTGT
CGGGTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTTTCGTCTCCAATTAGATATGACTC
TCCGAATAACTGACTTGTATACTAGTAGTTATTTCTCTACAGCTTAAGATCTTCACTCCAATGGA
CAGACTCTCTTTAGGCTAGTTAGGGGGACCAAGGAGAACCTATTG
Found at i:584826 original size:33 final size:33
Alignment explanation
Indices: 584775--584839 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
584765 TCCCTCCCGC
*
584775 GCTACTCACTGGGGCTGCTAAACGAACCATGCT
1 GCTAATCACTGGGGCTGCTAAACGAACCATGCT
*
584808 GCTAATCATTGGGGCTGCTAAACGAACCATGC
1 GCTAATCACTGGGGCTGCTAAACGAACCATGC
584840 AAGTCGTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.22
Consensus pattern (33 bp):
GCTAATCACTGGGGCTGCTAAACGAACCATGCT
Left flanking sequence: Indices 584275 -- 584774
CTATGTCAGGTACTTTATGTGCTGGCTATGTCCGGTGCTTATTGTGTTATGGCTGGTATGAGTGG
GTAAAACTGTATGGGCTACGTTAGGTGCTTATTGCGGTATGTCCGTTATGTATGGCTAAGTGTCT
CTATGGCTATGACTGTCAATGACGACTGGCTAGGAGTACCGGCTATAGTGACAAGGCCTCCCATC
TCTTGGCAATGACTCCTGGCTATGATTGTCTATGTGGTTGCTCTATGTACCAGCTATGTGAGGTG
CTCAATTTTCTATTTGAACTGATGCATGAGGAGACCGGCAGAGCCCGTAAGTCATAGTTCGGTCT
TGTATTTTTTATTTTCTTTTTGAGAGCCAGCTACTAATGCAAGTAGCCAAACACCTTTAGCTCCT
AAACGTCATTGGGTAATTATCCCTACCGAGTACTTCTATTGGGGTTCAGCTGATAGGTTGTTCCC
TTTACCTCGGTCCTCCTTCTACTCTTGGGTGATTTTCCCTCCCGC
Right flanking sequence: Indices 584840 -- 585339
AAGTCGTTATCATCCAATCAGTGACCTAACCCAGTCAGTCTGGTTGTCATCCCCACCTCCTAACT
ACGGGGTGATAAGCCCCACCTCTATACTAGGTTTTCATCCCTACCTCCTTTACGCTAGGATGCTG
GGCTGGTAATCACCCCTAAGCTACTATGGGCTGGTCATCCCTCCCTAAATATGTAATATGTATAT
ATACGTATATATATATATATATCTTATCTGTGTGTGTATTCCCGTATGGGTCCTCTCCTCTGTGT
GTAGCTGAGCAGCCCGGTGTAGCTCAGCCCATCCGAGTCGATTAGCGTAGCCTCGGGGATTAGAA
CGTATTAGAGCCAGTGGATGAAAGCCAGTGGATGAAAGCAGTCGATTAGGCAAGCCAAGTGGATT
AGCCAAGCCCATTGGATTAACGGAGCCAGGTCGAGTAGCGTAGCCCAGTCAATTCATGTGGGAAT
GAGGGGCACGTGAAAGAAAAGCGAACATAGAAGCAATTACGAGAA
Found at i:585192 original size:14 final size:14
Alignment explanation
Indices: 585173--585203 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
585163 AACGTATTAG
585173 AGCCAGTGGATGAA
1 AGCCAGTGGATGAA
585187 AGCCAGTGGATGAA
1 AGCCAGTGGATGAA
585201 AGC
1 AGC
585204 AGTCGATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.35, T:0.13
Consensus pattern (14 bp):
AGCCAGTGGATGAA
Left flanking sequence: Indices 584673 -- 585172
TTGGGTAATTATCCCTACCGAGTACTTCTATTGGGGTTCAGCTGATAGGTTGTTCCCTTTACCTC
GGTCCTCCTTCTACTCTTGGGTGATTTTCCCTCCCGCGCTACTCACTGGGGCTGCTAAACGAACC
ATGCTGCTAATCATTGGGGCTGCTAAACGAACCATGCAAGTCGTTATCATCCAATCAGTGACCTA
ACCCAGTCAGTCTGGTTGTCATCCCCACCTCCTAACTACGGGGTGATAAGCCCCACCTCTATACT
AGGTTTTCATCCCTACCTCCTTTACGCTAGGATGCTGGGCTGGTAATCACCCCTAAGCTACTATG
GGCTGGTCATCCCTCCCTAAATATGTAATATGTATATATACGTATATATATATATATATCTTATC
TGTGTGTGTATTCCCGTATGGGTCCTCTCCTCTGTGTGTAGCTGAGCAGCCCGGTGTAGCTCAGC
CCATCCGAGTCGATTAGCGTAGCCTCGGGGATTAGAACGTATTAG
Right flanking sequence: Indices 585204 -- 585703
AGTCGATTAGGCAAGCCAAGTGGATTAGCCAAGCCCATTGGATTAACGGAGCCAGGTCGAGTAGC
GTAGCCCAGTCAATTCATGTGGGAATGAGGGGCACGTGAAAGAAAAGCGAACATAGAAGCAATTA
CGAGAAGGCATCCTCTATAGGTTCCCAAACATAAAAGAATCCATCGCCACACCTGGCTATATGTC
TACACCTGTCTATTCACCCCACCTTCCTCAATTCCTAAGCAGAAATTCTTTCTAAGTCAGCGGTT
CTTTCACCCGTTATGTCCCTTCCTTCTTTCTCCCCTTATTTCCTTTCTGCCTTCCCCAGTTAATC
GCTATCGCTCATGGCTTCCATCAAAGTCAAGGTTCCTTCCTCAGGCCTTGTGATTGCGGTAGGCC
TAACTTTACTGTCAAGTTCCTATTTAATAGGTCATTAATCGTTTCATTAAGTTCCCAAGAGTTCA
TATCTTTTCTTTCTATTCAGCCAAGCAACCCACCTCGTTCAATCA
Found at i:585231 original size:18 final size:18
Alignment explanation
Indices: 585208--585248 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
585198 GAAAGCAGTC
*
585208 GATTAGGCAAGCCAAGTG
1 GATTAGCCAAGCCAAGTG
* *
585226 GATTAGCCAAGCCCATTG
1 GATTAGCCAAGCCAAGTG
585244 GATTA
1 GATTA
585249 ACGGAGCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (18 bp):
GATTAGCCAAGCCAAGTG
Left flanking sequence: Indices 584708 -- 585207
GTTCAGCTGATAGGTTGTTCCCTTTACCTCGGTCCTCCTTCTACTCTTGGGTGATTTTCCCTCCC
GCGCTACTCACTGGGGCTGCTAAACGAACCATGCTGCTAATCATTGGGGCTGCTAAACGAACCAT
GCAAGTCGTTATCATCCAATCAGTGACCTAACCCAGTCAGTCTGGTTGTCATCCCCACCTCCTAA
CTACGGGGTGATAAGCCCCACCTCTATACTAGGTTTTCATCCCTACCTCCTTTACGCTAGGATGC
TGGGCTGGTAATCACCCCTAAGCTACTATGGGCTGGTCATCCCTCCCTAAATATGTAATATGTAT
ATATACGTATATATATATATATATCTTATCTGTGTGTGTATTCCCGTATGGGTCCTCTCCTCTGT
GTGTAGCTGAGCAGCCCGGTGTAGCTCAGCCCATCCGAGTCGATTAGCGTAGCCTCGGGGATTAG
AACGTATTAGAGCCAGTGGATGAAAGCCAGTGGATGAAAGCAGTC
Right flanking sequence: Indices 585249 -- 585748
ACGGAGCCAGGTCGAGTAGCGTAGCCCAGTCAATTCATGTGGGAATGAGGGGCACGTGAAAGAAA
AGCGAACATAGAAGCAATTACGAGAAGGCATCCTCTATAGGTTCCCAAACATAAAAGAATCCATC
GCCACACCTGGCTATATGTCTACACCTGTCTATTCACCCCACCTTCCTCAATTCCTAAGCAGAAA
TTCTTTCTAAGTCAGCGGTTCTTTCACCCGTTATGTCCCTTCCTTCTTTCTCCCCTTATTTCCTT
TCTGCCTTCCCCAGTTAATCGCTATCGCTCATGGCTTCCATCAAAGTCAAGGTTCCTTCCTCAGG
CCTTGTGATTGCGGTAGGCCTAACTTTACTGTCAAGTTCCTATTTAATAGGTCATTAATCGTTTC
ATTAAGTTCCCAAGAGTTCATATCTTTTCTTTCTATTCAGCCAAGCAACCCACCTCGTTCAATCA
TTATTAGCTGATCGGCCCCCGGAGGGCATCATTGGAAGGTGACCA
Found at i:585882 original size:42 final size:42
Alignment explanation
Indices: 585818--585926 Score: 182
Period size: 42 Copynumber: 2.6 Consensus size: 42
585808 TACGCATCCT
*
585818 TAATTGGGCGGTTTATAAGCCTCCTGGGTCGAAGGGTTACCA
1 TAATGGGGCGGTTTATAAGCCTCCTGGGTCGAAGGGTTACCA
585860 TAATGGGGCGGTTTATAAGCCTCCTGGGTCGAAGGGTTACCA
1 TAATGGGGCGGTTTATAAGCCTCCTGGGTCGAAGGGTTACCA
** *
585902 TAATGGGAAGATTTATAAGCCTCCT
1 TAATGGGGCGGTTTATAAGCCTCCT
585927 CCGTAAGTAG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (42 bp):
TAATGGGGCGGTTTATAAGCCTCCTGGGTCGAAGGGTTACCA
Left flanking sequence: Indices 585318 -- 585817
AACATAGAAGCAATTACGAGAAGGCATCCTCTATAGGTTCCCAAACATAAAAGAATCCATCGCCA
CACCTGGCTATATGTCTACACCTGTCTATTCACCCCACCTTCCTCAATTCCTAAGCAGAAATTCT
TTCTAAGTCAGCGGTTCTTTCACCCGTTATGTCCCTTCCTTCTTTCTCCCCTTATTTCCTTTCTG
CCTTCCCCAGTTAATCGCTATCGCTCATGGCTTCCATCAAAGTCAAGGTTCCTTCCTCAGGCCTT
GTGATTGCGGTAGGCCTAACTTTACTGTCAAGTTCCTATTTAATAGGTCATTAATCGTTTCATTA
AGTTCCCAAGAGTTCATATCTTTTCTTTCTATTCAGCCAAGCAACCCACCTCGTTCAATCATTAT
TAGCTGATCGGCCCCCGGAGGGCATCATTGGAAGGTGACCAAAGCAAGCAATGTATTTCAATTTA
CTTATTGGGTGGGGGGGCTTATGGTCGAGCCTGCTTACGCATCCT
Right flanking sequence: Indices 585927 -- 586426
CCGTAAGTAGCTTGGTTGCTAGATACGGCGTAGTTAGTTATATATGAGCATGTGGTAGTTTAGGT
AGAGATAGAGATGTGCACCTCGGCGAGATGGCGTAATGACATATATAATGATAGTGATTTTCTAG
CTAGAGGCAGCCTTGAGCAATATATAAACCCCCCAAAGAATGAAGCGATAACTCGATTTGGGGAT
GCACTTTAAGGCTCGACCACTATTTACCCACCCAATCCCCTTAGGCGGAGGTTTTCACATATTTC
GATGGCGGCCAGTCGAGCATCCTACTAATTCGGCCATTTTAGCTTGGCGGAGGTTTTCACATCTT
TCCCTCAATTTACTTATTGGGTGGGGGGGCTTTTGGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGTGTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTATTATAGCATTTTCAGGAGGCGGA
GGTTTTCACATATTTCGATGGCGGCCAGTCGAGCATGCTTACGCA
Found at i:586541 original size:27 final size:25
Alignment explanation
Indices: 586511--586566 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
586501 GGCTCTCCTC
* *
586511 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTAACAGTCGAG-CACCTAAA-GG
586538 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
586563 TCCT
1 TCCT
586567 CTCCTCTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 6 0.22
26 7 0.26
27 14 0.52
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 586011 -- 586510
TCGGCGAGATGGCGTAATGACATATATAATGATAGTGATTTTCTAGCTAGAGGCAGCCTTGAGCA
ATATATAAACCCCCCAAAGAATGAAGCGATAACTCGATTTGGGGATGCACTTTAAGGCTCGACCA
CTATTTACCCACCCAATCCCCTTAGGCGGAGGTTTTCACATATTTCGATGGCGGCCAGTCGAGCA
TCCTACTAATTCGGCCATTTTAGCTTGGCGGAGGTTTTCACATCTTTCCCTCAATTTACTTATTG
GGTGGGGGGGCTTTTGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGTGTTGGGGGGTTAACA
GTCGAGCCTGCTTGCGCATCCTATTATAGCATTTTCAGGAGGCGGAGGTTTTCACATATTTCGAT
GGCGGCCAGTCGAGCATGCTTACGCATTCTACTAATTTGGCCATTTTAGCTTGGCGGAGGTTTTT
CAAGATTCCCCTTCAATTTACTTATTGGGTGGGGGGGCTCTCCTC
Right flanking sequence: Indices 586567 -- 587066
CTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCCTGCTTACGCATCCTT
TTGGTCGAGCACCTAAAGGTTAGGGTTTTCTTATTGGGTTGGGGGGTTAACAGTCGAGCCTGCTT
GCGCATCCTATTATAGCATTTTCAGGAGGCGGAGGTTAGGGAAGTTTTACTTATCATTTGATCAT
ATCAACTTGGCCATCTTGACCCATTTGAAGCTTACTTTTTCAGATCTGCCTTGGCGGCACTTTGA
CCACCCTTCCCTCCTAGTTTTACTTATTCACCTTGGCGGAGGTTTGATGCTTTGTCCCTTGCCCG
ATGCGGACAAGCGACTACGTTCCTTTCTTTCTTTGTTCTTCTTATTATTGGGTTTACAGCATATT
TGGAGTGGTTTCTCTCTCTTTCCTGTTGTTCCTGCCCAGTTGCTGTTGTTGTTCTCGCCCACCCA
GTCGTTGCCCCTAGCGGTAGCGTCAATCGCCGTTTGCTCTTCTGC
Found at i:590139 original size:4 final size:4
Alignment explanation
Indices: 590132--590160 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
590122 ACGGACGGAC
590132 GAAT GAAT GAAT GAAT GAAT GAAT GAAT G
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT G
590161 CTTTAGGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (4 bp):
GAAT
Left flanking sequence: Indices 589632 -- 590131
CGTTGACAATACCCCGGAGCCCATACCCACCGGTATATGCCAGTTGTCGCCGAGTTCAAGGCACA
GTTGATAGCAAAGAAAGACAAGTTGATTTACCAGTTGAGTGCTTTATAGACTTGCACCCCTCGAT
TGATACAGGGATGGGCTTGATACACTCTTAGGAGGAAGCCACATAAAGCAACCACATAACTCTGG
ACATATGCATGGTACGACGGTACGGTATGGCACACGGTACGGGAACGAATGGATATCCTACCTGG
GATGGACTGCACGGTTGGGCTGGGATACTCGGCTTGGGTTGGGCTCATGGGCTGCTCCGCTAATC
CAATGGGGCTTGGATACTCAGCTGCTTGGCTATTCGACTGGACTAATTGAAGGGGCCTAATCACA
CAGCTACACATAGAGCTGCTAATCGAAGGAGCCTAATCGAAAAGGGGGCCTATTCACTGGGAAGG
GGCATTGACGACGGTCTACCGAGAGGGAGGGGCGCACGGACGGAC
Right flanking sequence: Indices 590161 -- 590660
CTTTAGGGTTACCGATCCATACAGAACACAAGGGGCCTATAGCTACTCACTGGGAAGGGGCCTTA
TCCACCACAGGGAGGGCCTTATCACTAGGGCTACTCAATGGGCACTAATCCACAGGGAGGGGCAC
AGACTACATATACCGAGAAATATGACATTTTACCCACCTGAAGACAGTGAAAAGACATGGCTTTT
ACTTACGAGCAGATACATTGAGTTTAACGGATTGGATTGGATTGAATTGGATTGGATTTTTCACT
TATTAGTCTGATGATGCTGGCCGGAAGGAGCGGCCAGAGGGCATGGATGATTTAGCTTACGTATA
CAGAACACAAGGTTACTACAGCACCTCACATAGAGATATAGCCATACTGACAGACATAGACAGAA
GTCCTTTTTTGATAGCTGATCATTGTAACCAGGCGGGCATAGTTGGGCTTGGATCCTGGGATGGA
TGGGCTGCTCGGTTGGGCTGCTACTCAATTGAGCTCATGGTGGGA
Found at i:590394 original size:5 final size:5
Alignment explanation
Indices: 590384--590413 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
590374 TGAGTTTAAC
*
590384 GGATT GGATT GGATT GAATT GGATT GGATT
1 GGATT GGATT GGATT GGATT GGATT GGATT
590414 TTTCACTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (5 bp):
GGATT
Left flanking sequence: Indices 589884 -- 590383
CTACCTGGGATGGACTGCACGGTTGGGCTGGGATACTCGGCTTGGGTTGGGCTCATGGGCTGCTC
CGCTAATCCAATGGGGCTTGGATACTCAGCTGCTTGGCTATTCGACTGGACTAATTGAAGGGGCC
TAATCACACAGCTACACATAGAGCTGCTAATCGAAGGAGCCTAATCGAAAAGGGGGCCTATTCAC
TGGGAAGGGGCATTGACGACGGTCTACCGAGAGGGAGGGGCGCACGGACGGACGAATGAATGAAT
GAATGAATGAATGAATGCTTTAGGGTTACCGATCCATACAGAACACAAGGGGCCTATAGCTACTC
ACTGGGAAGGGGCCTTATCCACCACAGGGAGGGCCTTATCACTAGGGCTACTCAATGGGCACTAA
TCCACAGGGAGGGGCACAGACTACATATACCGAGAAATATGACATTTTACCCACCTGAAGACAGT
GAAAAGACATGGCTTTTACTTACGAGCAGATACATTGAGTTTAAC
Right flanking sequence: Indices 590414 -- 590913
TTTCACTTATTAGTCTGATGATGCTGGCCGGAAGGAGCGGCCAGAGGGCATGGATGATTTAGCTT
ACGTATACAGAACACAAGGTTACTACAGCACCTCACATAGAGATATAGCCATACTGACAGACATA
GACAGAAGTCCTTTTTTGATAGCTGATCATTGTAACCAGGCGGGCATAGTTGGGCTTGGATCCTG
GGATGGATGGGCTGCTCGGTTGGGCTGCTACTCAATTGAGCTCATGGTGGGATCCTGCCTTGGGA
TACTCGACCGGGATACTTGTCCTGGATACTTGGGCTTGGTTTGGCTGCTCGGTTTGAATACTTGG
CTCGGATACTCGGGCTTGGATACCTGGCTTATGGTGGTCTTGGCTGAAGGTGAAAGGTGAATGGC
TTCTGGTTATAGGTGGAAGGCTTATGTCTAATGCGAATGGCTAATGGTTAATGGCTAAACCCTGT
CTCAATCCCTTTCAGAGTACCCTTTGCGTATGATCCCTAACTGGC
Found at i:597153 original size:27 final size:27
Alignment explanation
Indices: 597088--597171 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
597078 TGGTTTCTTG
* *
597088 AGGATGCGCAAGCAGGCTCGACCGCT-
1 AGGATGCGCAAGCAGGCTCGACTGTTA
597114 AGGATGCGCAAGCAGGCTCGACTGTTA
1 AGGATGCGCAAGCAGGCTCGACTGTTA
*
597141 AGGATGCGTAAGCAGGCTCGACTGTTA
1 AGGATGCGCAAGCAGGCTCGACTGTTA
597168 AGGA
1 AGGA
597172 CCGGCAACGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 24 0.44
27 30 0.56
ACGTcount: A:0.26, C:0.23, G:0.35, T:0.17
Consensus pattern (27 bp):
AGGATGCGCAAGCAGGCTCGACTGTTA
Left flanking sequence: Indices 596588 -- 597087
GGAGTACTTCTACATGTGGGTGCTGCTCGCTCGGGAGCGATCCCCATAAACTTGACTGGATCAAA
GGATGGGATGGATCGACTTTAGTAGTTCCCTTGGGGCCTCACCGAAAGAAGGAAGGCTCCCCACA
TGAACAGAGATCGGGGAAGATTGAAGTCTTAGATAGATGTTGGGGTGCGTCTGCCTATTCATGTT
CGCCAAGCTGGTTTGCTTATGTGCCGGTAGCTACAGGGCTGGCTACGGGTCTGATCTTCCCGGTG
GAGGAAGACGAGTCAATACTGGACTTGAAAGCTGAGTTAGCAAGTAAAAGCACAAGACAGATATC
TAGGAAAGTCTTTGAGGGGAATAAATCAAATTGAGGGGAATAAATCATTGATAGCTCGAGTGCTT
GCCTTATTCTTCCTTGAACTTACAAAATATGCTGAGTTTACCCAGCATCCTATCAGCACCAGTAT
CAGTAGAGTAAGAAGCTGATACGGGGTTTAGACAGTGGTTTCTTG
Right flanking sequence: Indices 597172 -- 597671
CCGGCAACGGGGCTCGACTGATAAGGACCGGCAACGGGGCTCGACTGATAAGGACCCTTTAGGGG
GCTCGACTGATAAGGAGAGGAGAGGAGAGGAGAGGACCTTTAGGGTGCGTAAGCACGCTCGACTA
ATAAGGACCTTTAGGTACTCGACCCCAAGGGAGAGGATGCGTAAGCAGGCTCGACTGTTAAGGCC
GCCATCACCTTTAGGTACTCGACCACAAGGGAGAGGACCCTTTAGGGGGCTCGACTGATAAGGAC
CCTTTAGGGGGCTCGACTGTTAAGGAGAGGAGAGGTGCTCGACCAAAAGGGAGAGGAGAGGGAGA
GGAGGCGGAGGTTTGAGTGCTCCCGATGGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTAT
AAGTGAATTTGGGGGGGGGCTGCCTTATATTGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGG
CTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATT
Found at i:597185 original size:27 final size:27
Alignment explanation
Indices: 597155--597252 Score: 142
Period size: 27 Copynumber: 3.6 Consensus size: 27
597145 TGCGTAAGCA
*
597155 GGCTCGACTGTTAAGGACCGGCAACGG
1 GGCTCGACTGATAAGGACCGGCAACGG
597182 GGCTCGACTGATAAGGACCGGCAACGG
1 GGCTCGACTGATAAGGACCGGCAACGG
**** *
597209 GGCTCGACTGATAAGGACCCTTTAGGG
1 GGCTCGACTGATAAGGACCGGCAACGG
597236 GGCTCGACTGATAAGGA
1 GGCTCGACTGATAAGGA
597253 GAGGAGAGGA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.24, C:0.23, G:0.36, T:0.16
Consensus pattern (27 bp):
GGCTCGACTGATAAGGACCGGCAACGG
Left flanking sequence: Indices 596655 -- 597154
ATGGGATGGATCGACTTTAGTAGTTCCCTTGGGGCCTCACCGAAAGAAGGAAGGCTCCCCACATG
AACAGAGATCGGGGAAGATTGAAGTCTTAGATAGATGTTGGGGTGCGTCTGCCTATTCATGTTCG
CCAAGCTGGTTTGCTTATGTGCCGGTAGCTACAGGGCTGGCTACGGGTCTGATCTTCCCGGTGGA
GGAAGACGAGTCAATACTGGACTTGAAAGCTGAGTTAGCAAGTAAAAGCACAAGACAGATATCTA
GGAAAGTCTTTGAGGGGAATAAATCAAATTGAGGGGAATAAATCATTGATAGCTCGAGTGCTTGC
CTTATTCTTCCTTGAACTTACAAAATATGCTGAGTTTACCCAGCATCCTATCAGCACCAGTATCA
GTAGAGTAAGAAGCTGATACGGGGTTTAGACAGTGGTTTCTTGAGGATGCGCAAGCAGGCTCGAC
CGCTAGGATGCGCAAGCAGGCTCGACTGTTAAGGATGCGTAAGCA
Right flanking sequence: Indices 597253 -- 597752
GAGGAGAGGAGAGGAGAGGACCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCTTTAGGT
ACTCGACCCCAAGGGAGAGGATGCGTAAGCAGGCTCGACTGTTAAGGCCGCCATCACCTTTAGGT
ACTCGACCACAAGGGAGAGGACCCTTTAGGGGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGA
CTGTTAAGGAGAGGAGAGGTGCTCGACCAAAAGGGAGAGGAGAGGGAGAGGAGGCGGAGGTTTGA
GTGCTCCCGATGGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGG
GGGCTGCCTTATATTGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGCTGCCTTATATTATAT
TGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGGGCGGCCTTTTAGTCGAGAGTTCGGCAGG
CTCACCCTCACCCATATGATGGATGAGCGATAAATCCCTTACTGA
Found at i:597418 original size:65 final size:65
Alignment explanation
Indices: 597308--597429 Score: 172
Period size: 65 Copynumber: 1.9 Consensus size: 65
597298 ACTAATAAGG
* ** *
597308 ACCTTTAGGTACTCGACCCCAAGGGAGAGGATGCGTAAGCAGGCTCGACTGTTAAGGCCGCCATC
1 ACCTTTAGGTACTCGACCACAAGGGAGAGGACCCGTAAGCAGGCTCGACTGATAAGGCCGCCATC
* * **
597373 ACCTTTAGGTACTCGACCACAAGGGAGAGGACCCTTTAGGGGGCTCGACTGATAAGG
1 ACCTTTAGGTACTCGACCACAAGGGAGAGGACCCGTAAGCAGGCTCGACTGATAAGG
597430 ACCCTTTAGG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 49 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.19
Consensus pattern (65 bp):
ACCTTTAGGTACTCGACCACAAGGGAGAGGACCCGTAAGCAGGCTCGACTGATAAGGCCGCCATC
Left flanking sequence: Indices 596808 -- 597307
GGTAGCTACAGGGCTGGCTACGGGTCTGATCTTCCCGGTGGAGGAAGACGAGTCAATACTGGACT
TGAAAGCTGAGTTAGCAAGTAAAAGCACAAGACAGATATCTAGGAAAGTCTTTGAGGGGAATAAA
TCAAATTGAGGGGAATAAATCATTGATAGCTCGAGTGCTTGCCTTATTCTTCCTTGAACTTACAA
AATATGCTGAGTTTACCCAGCATCCTATCAGCACCAGTATCAGTAGAGTAAGAAGCTGATACGGG
GTTTAGACAGTGGTTTCTTGAGGATGCGCAAGCAGGCTCGACCGCTAGGATGCGCAAGCAGGCTC
GACTGTTAAGGATGCGTAAGCAGGCTCGACTGTTAAGGACCGGCAACGGGGCTCGACTGATAAGG
ACCGGCAACGGGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGA
GAGGAGAGGACCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGG
Right flanking sequence: Indices 597430 -- 597929
ACCCTTTAGGGGGCTCGACTGTTAAGGAGAGGAGAGGTGCTCGACCAAAAGGGAGAGGAGAGGGA
GAGGAGGCGGAGGTTTGAGTGCTCCCGATGGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTT
ATAAGTGAATTTGGGGGGGGGCTGCCTTATATTGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGGGCGGCCTTTT
AGTCGAGAGTTCGGCAGGCTCACCCTCACCCATATGATGGATGAGCGATAAATCCCTTACTGACT
TCGATCTCTGAGAAGCCGAGCTATCAATTAGGTACGTTAGTGACTTTTTTAGTTACTTATTTGAT
AGGGGCCACCCAATAAGTAAATTGAAGGGAATGAGTCAAATGAGTCAAAGCAGAGTGTTTTATAT
ATGTAATTACGCCATCTCGCCGAGGTGCACATCTCTATCTCTACC
Found at i:597438 original size:27 final size:27
Alignment explanation
Indices: 597400--597457 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
597390 CACAAGGGAG
597400 AGGACCCTTTAGGGGGCTCGACTGATA
1 AGGACCCTTTAGGGGGCTCGACTGATA
*
597427 AGGACCCTTTAGGGGGCTCGACTGTTA
1 AGGACCCTTTAGGGGGCTCGACTGATA
597454 AGGA
1 AGGA
597458 GAGGAGAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.22, C:0.21, G:0.34, T:0.22
Consensus pattern (27 bp):
AGGACCCTTTAGGGGGCTCGACTGATA
Left flanking sequence: Indices 596900 -- 597399
CAAGACAGATATCTAGGAAAGTCTTTGAGGGGAATAAATCAAATTGAGGGGAATAAATCATTGAT
AGCTCGAGTGCTTGCCTTATTCTTCCTTGAACTTACAAAATATGCTGAGTTTACCCAGCATCCTA
TCAGCACCAGTATCAGTAGAGTAAGAAGCTGATACGGGGTTTAGACAGTGGTTTCTTGAGGATGC
GCAAGCAGGCTCGACCGCTAGGATGCGCAAGCAGGCTCGACTGTTAAGGATGCGTAAGCAGGCTC
GACTGTTAAGGACCGGCAACGGGGCTCGACTGATAAGGACCGGCAACGGGGCTCGACTGATAAGG
ACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAGAGGAGAGGACCTTTAGGGTGCGTAAG
CACGCTCGACTAATAAGGACCTTTAGGTACTCGACCCCAAGGGAGAGGATGCGTAAGCAGGCTCG
ACTGTTAAGGCCGCCATCACCTTTAGGTACTCGACCACAAGGGAG
Right flanking sequence: Indices 597458 -- 597957
GAGGAGAGGTGCTCGACCAAAAGGGAGAGGAGAGGGAGAGGAGGCGGAGGTTTGAGTGCTCCCGA
TGGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGGGGCTGCCTT
ATATTGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGCTGCCTTATATTATATTGGGCCCCCC
CTCTCCTTATAAGTGAATTTGGGGGGGGCGGCCTTTTAGTCGAGAGTTCGGCAGGCTCACCCTCA
CCCATATGATGGATGAGCGATAAATCCCTTACTGACTTCGATCTCTGAGAAGCCGAGCTATCAAT
TAGGTACGTTAGTGACTTTTTTAGTTACTTATTTGATAGGGGCCACCCAATAAGTAAATTGAAGG
GAATGAGTCAAATGAGTCAAAGCAGAGTGTTTTATATATGTAATTACGCCATCTCGCCGAGGTGC
ACATCTCTATCTCTACCTAAACTACCATATGCTCATATATAACTA
Found at i:597609 original size:49 final size:51
Alignment explanation
Indices: 597528--597681 Score: 231
Period size: 49 Copynumber: 3.0 Consensus size: 51
597518 CCCGATGGCT
*
597528 GCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGG
1 GCCTTACATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGG
* * * *
597579 GGC-TGCCTTATATT-GGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGCT
1 GCCTTACATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGG-G
*
597629 GCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGG
1 GCCTTACATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGG
597680 GC
1 GC
597682 GGCCTTTTAG
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
49 34 0.38
50 10 0.11
51 12 0.13
52 34 0.38
ACGTcount: A:0.16, C:0.25, G:0.26, T:0.32
Consensus pattern (51 bp):
GCCTTACATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGGGGG
Left flanking sequence: Indices 597028 -- 597527
TATCAGCACCAGTATCAGTAGAGTAAGAAGCTGATACGGGGTTTAGACAGTGGTTTCTTGAGGAT
GCGCAAGCAGGCTCGACCGCTAGGATGCGCAAGCAGGCTCGACTGTTAAGGATGCGTAAGCAGGC
TCGACTGTTAAGGACCGGCAACGGGGCTCGACTGATAAGGACCGGCAACGGGGCTCGACTGATAA
GGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAGAGGAGAGGACCTTTAGGGTGCGTA
AGCACGCTCGACTAATAAGGACCTTTAGGTACTCGACCCCAAGGGAGAGGATGCGTAAGCAGGCT
CGACTGTTAAGGCCGCCATCACCTTTAGGTACTCGACCACAAGGGAGAGGACCCTTTAGGGGGCT
CGACTGATAAGGACCCTTTAGGGGGCTCGACTGTTAAGGAGAGGAGAGGTGCTCGACCAAAAGGG
AGAGGAGAGGGAGAGGAGGCGGAGGTTTGAGTGCTCCCGATGGCT
Right flanking sequence: Indices 597682 -- 598181
GGCCTTTTAGTCGAGAGTTCGGCAGGCTCACCCTCACCCATATGATGGATGAGCGATAAATCCCT
TACTGACTTCGATCTCTGAGAAGCCGAGCTATCAATTAGGTACGTTAGTGACTTTTTTAGTTACT
TATTTGATAGGGGCCACCCAATAAGTAAATTGAAGGGAATGAGTCAAATGAGTCAAAGCAGAGTG
TTTTATATATGTAATTACGCCATCTCGCCGAGGTGCACATCTCTATCTCTACCTAAACTACCATA
TGCTCATATATAACTACCACCATAACAAGGAGCCGTAAGGCCGCTCGACCATTCTTTCTTCTCTC
TCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGATCTGAATCTCTATTTTATGAAGC
CGCAACTACCACATGCTCATATATAACTACCACCATTTCACCGGGCTATCAATTAAGAATGACCA
GCAGTCACTTACTCATTGTCTTGGTCGGCATTCATTATATACGTA
Found at i:597671 original size:52 final size:52
Alignment explanation
Indices: 597524--597678 Score: 244
Period size: 52 Copynumber: 3.0 Consensus size: 52
597514 TGCTCCCGAT
597524 GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
1 GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
* * ***
597576 GG-GGGC-TGCCTTATATT-GGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
1 GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
597625 GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
1 GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
597677 GG
1 GG
597679 GGCGGCCTTT
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
49 34 0.38
50 10 0.11
51 10 0.11
52 36 0.40
ACGTcount: A:0.16, C:0.25, G:0.26, T:0.33
Consensus pattern (52 bp):
GGCTGCCTTATATTATATTGGGCCCCCCCTCTCCTTATAAGTGAATTTGGGG
Left flanking sequence: Indices 597024 -- 597523
ATCCTATCAGCACCAGTATCAGTAGAGTAAGAAGCTGATACGGGGTTTAGACAGTGGTTTCTTGA
GGATGCGCAAGCAGGCTCGACCGCTAGGATGCGCAAGCAGGCTCGACTGTTAAGGATGCGTAAGC
AGGCTCGACTGTTAAGGACCGGCAACGGGGCTCGACTGATAAGGACCGGCAACGGGGCTCGACTG
ATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAGAGGAGAGGACCTTTAGGGTG
CGTAAGCACGCTCGACTAATAAGGACCTTTAGGTACTCGACCCCAAGGGAGAGGATGCGTAAGCA
GGCTCGACTGTTAAGGCCGCCATCACCTTTAGGTACTCGACCACAAGGGAGAGGACCCTTTAGGG
GGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGTTAAGGAGAGGAGAGGTGCTCGACCAAA
AGGGAGAGGAGAGGGAGAGGAGGCGGAGGTTTGAGTGCTCCCGAT
Right flanking sequence: Indices 597679 -- 598178
GGCGGCCTTTTAGTCGAGAGTTCGGCAGGCTCACCCTCACCCATATGATGGATGAGCGATAAATC
CCTTACTGACTTCGATCTCTGAGAAGCCGAGCTATCAATTAGGTACGTTAGTGACTTTTTTAGTT
ACTTATTTGATAGGGGCCACCCAATAAGTAAATTGAAGGGAATGAGTCAAATGAGTCAAAGCAGA
GTGTTTTATATATGTAATTACGCCATCTCGCCGAGGTGCACATCTCTATCTCTACCTAAACTACC
ATATGCTCATATATAACTACCACCATAACAAGGAGCCGTAAGGCCGCTCGACCATTCTTTCTTCT
CTCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGATCTGAATCTCTATTTTATGA
AGCCGCAACTACCACATGCTCATATATAACTACCACCATTTCACCGGGCTATCAATTAAGAATGA
CCAGCAGTCACTTACTCATTGTCTTGGTCGGCATTCATTATATAC
Found at i:598515 original size:23 final size:24
Alignment explanation
Indices: 598489--598535 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
598479 CATCAGGACC
598489 TTCA-TCTACGGGGG-GCATCCTCA
1 TTCATTCTA-GGGGGAGCATCCTCA
*
598512 TTCATTGTAGGGGGAGCATCCTCA
1 TTCATTCTAGGGGGAGCATCCTCA
598536 CACGCAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.28
Consensus pattern (24 bp):
TTCATTCTAGGGGGAGCATCCTCA
Left flanking sequence: Indices 597989 -- 598488
ACCATTCTTTCTTCTCTCTCTCTAGCTAGGAAATCACTCTCATTATATATGTCATTACGATCTGA
ATCTCTATTTTATGAAGCCGCAACTACCACATGCTCATATATAACTACCACCATTTCACCGGGCT
ATCAATTAAGAATGACCAGCAGTCACTTACTCATTGTCTTGGTCGGCATTCATTATATACGTAAT
TACGTCATTCGAGATAGGAACCAGATGTGCACCTCGGCGAGATAGCGTAATGACATATATAAGAA
CGGTGATAGTGACTTGCGTGAAAGCGATTAGCCAAAACTGAAACAGCCGTAAGGCCGCATCTAGG
GCCCCATATTACTTAGGGGCGGAGCCACTCACTATTCCGATGGTGAGGACCGGTAGGGGCTCGAC
TGTCAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGTCACTCACTATTCATATG
GTGAGGGTTCTCTAGCCTCCTACTCGATAACAACCCATCAGGACC
Right flanking sequence: Indices 598536 -- 599035
CACGCAGTCACTTACTCATTGTCTTGGTCGGCATTCATTATATACGTAATTACGTCAAAGGAATG
TATATCGCTTGTCTGTAATCAGACAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGAACGTAG
TGCTTGCTTGACGTTAGGAAAGCAAGGATGCATAAGCATGCTCGACTGTTAAGGAGAGGAACTGA
CTGAACCTAAACTACCACATGCTCATATATAACTACCAGCAGTCACTTACTCATTGTCTTGATGA
ACCAATTAGGCAGCAATCTTGTGAAACCACATGCTCATATATAACTAAGCCGTATCTAGCAACCA
AGCTACTTACGGAGGTGGCTTATCAGCCTTCTTAGCATGCTTATCCCTACGGCGCTGCTCCCTTC
GTAGTTTCTTATCAGACTTCACCTTAGAACCATGTGTAGGGTGGTGCTTGAACTGAGGAGGTCTT
TTCATTGGAGATTCAGTCCTGCGTAGGCTGAATATAACCCTAAAA
Found at i:599439 original size:33 final size:33
Alignment explanation
Indices: 599397--599515 Score: 238
Period size: 33 Copynumber: 3.6 Consensus size: 33
599387 TGTGAAACAA
599397 ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
1 ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
599430 ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
1 ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
599463 ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
1 ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
599496 ATATATGCTCGACTGAAAGG
1 ATATATGCTCGACTGAAAGG
599516 AGAGGGAGCG
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 86 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (33 bp):
ATATATGCTCGACTGAAAGGCCGCCATCGTGTG
Left flanking sequence: Indices 598897 -- 599396
ATGCTTATCCCTACGGCGCTGCTCCCTTCGTAGTTTCTTATCAGACTTCACCTTAGAACCATGTG
TAGGGTGGTGCTTGAACTGAGGAGGTCTTTTCATTGGAGATTCAGTCCTGCGTAGGCTGAATATA
ACCCTAAAAATTTGGCCATTTTCACCCCTCTTTTTATATATATAGCGCGGAGGTTTTTCAAGATT
CCCCTCAATTTACTTATTGGGTGGGGGGGCTTTTGGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGGTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTATTATAGCATTTTCAGGAGGCGGA
GGCAGAATACACTCTTAGTTTTGGATTATCTCGATTGTTCAAAGTGGCTCCATGACAATAGCGTA
TATAAAGAAACGGCATCTCCATGAGCATGAAGGGAAGTAAGGAGATCGATACCCAGTGCCAAGAC
AAAAAGCTAAGCTATCTTATTTAAGGGAGATGCTGTGTGAAACAA
Right flanking sequence: Indices 599516 -- 600015
AGAGGGAGCGCATGGGCATGCTTCACCAACGCGAGAGGAGAGGTCCACTCTTACTTCTCCGAGCT
CCATAGGGCAATGAGCTCCATAGGGAAATAGGTAGATTCAACCCAGCTAAGCATCACTTAATGGA
GAACTTCATGCTTAAGGTCACTAAATCCCGAGACCATTAAGAGGGATCAGCTCAGCTAAGAGCTC
CTCGTATCAGACTATTCCCAACCTTAGGGATCAGAGAACTTAGCTTATTTATCTTCCCAACCTTA
GGGGACGCATAGGAAGACATTGTTAGTTAGACATCGTTAGTTAAGAGCAATGCTAAGAAGAGCAA
CATACATGAGGAGACTGCCAGAGCAACACAGCTAACAACACGGCTAAAAAGGGCATGGCACAACT
AAGAGCGAGAGGGATAACTCAGCCTAATCGTATAAGATCAGATCATATTGACTGGGATATTGCCA
GGCCAGATGGAGGGAGTTTACAGGCCTACCCGGAACATTCATTCA
Found at i:602688 original size:18 final size:18
Alignment explanation
Indices: 602665--602700 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
602655 TGCTAAGTTG
602665 CGAGAGAAGATAGTGGAT
1 CGAGAGAAGATAGTGGAT
602683 CGAGAGAAGATAGTGGAT
1 CGAGAGAAGATAGTGGAT
602701 GTTGGGATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.39, T:0.17
Consensus pattern (18 bp):
CGAGAGAAGATAGTGGAT
Left flanking sequence: Indices 602165 -- 602664
TCAGGGTACTCACTTTGTCAGCCAGACCATAGCCGCATTGACCAGAGAGTTTCTGATCCAGCATC
ACAAAAGTAGCCCTTACCATCTGCAAGCAAATGGTACAGTAGAATCCTTTAACAAAATCTTAGAG
CCGCCATCGATTTCTCGCTCGACCAACGGGAGAGGACTTTATTGCTTTGGGGGGTGACTTATTTA
GAGGGGCCACCAAATAAGTAAACCAAGGAGGGTCGTTAGTTTCCAAAGAGAGTGAGCGAGGGGGC
CTGGGGTTTCAACCAATATCAAAATCAAAGATGGAGTTCGTTGTTAGGAGTTATCCCTTTCCGAG
CCGAGGCCGAGTTAGTCGTTCTGATGAGCTAGGAGTCCGCTTAGCGCTACTGGTTACCCCGGAGT
GTCCTTATGCGCCTCTTCTATTACCTCTGAAATGCTCCTTTCGTTGATCTGAGATGATATGAGTG
ACATGATCTGATATGATGCTGATATACGATGCTGTTGCTAAGTTG
Right flanking sequence: Indices 602701 -- 603200
GTTGGGATGCGATGCATGGTGGTTCCTTTGCTAACGATTACATGGATATACGATGCTGTGTTGTT
ACATGGGATTGAGATAAATGGGATAACCCAATGAGATGAGTGATAATGAGAATGAGATTGCTAAC
CTTACCTGTCGTTAGGATGAGTTAGATGAGTTAGGATGAGCCCACCTGAGTTCAATTCGTTAGGA
TGAGTTAGATTCGTTGAGTTAGGAGATGCTCACCTTACGATTTAGGAGGATCCCCAACCCAATCA
TGGCACCCAATGTCTTCGTGGATACCCATAACCTTAACCAATATTCGTTACCCAAATAGTTGAGT
TGTACCCTGAGATGAGTTCCATGAGATAGCATCATGATGTTGATACGCTACGCATTACGCATTCG
TTGTTCCCAGTTACGCTACGCACATGATATACGATGCTGTGTTGTTACGTTACATGGGATTGATA
GGATTGATATCAACATGGGATTGATATAAGTGGGATATATCTGAG
Found at i:602868 original size:10 final size:10
Alignment explanation
Indices: 602841--602870 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
602831 CTTACCTGTC
602841 GTTAGGATGA
1 GTTAGGATGA
602851 GTTA-GATGA
1 GTTAGGATGA
602860 GTTAGGATGA
1 GTTAGGATGA
602870 G
1 G
602871 CCCACCTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.40, T:0.30
Consensus pattern (10 bp):
GTTAGGATGA
Left flanking sequence: Indices 602341 -- 602840
TTGGGGGGTGACTTATTTAGAGGGGCCACCAAATAAGTAAACCAAGGAGGGTCGTTAGTTTCCAA
AGAGAGTGAGCGAGGGGGCCTGGGGTTTCAACCAATATCAAAATCAAAGATGGAGTTCGTTGTTA
GGAGTTATCCCTTTCCGAGCCGAGGCCGAGTTAGTCGTTCTGATGAGCTAGGAGTCCGCTTAGCG
CTACTGGTTACCCCGGAGTGTCCTTATGCGCCTCTTCTATTACCTCTGAAATGCTCCTTTCGTTG
ATCTGAGATGATATGAGTGACATGATCTGATATGATGCTGATATACGATGCTGTTGCTAAGTTGC
GAGAGAAGATAGTGGATCGAGAGAAGATAGTGGATGTTGGGATGCGATGCATGGTGGTTCCTTTG
CTAACGATTACATGGATATACGATGCTGTGTTGTTACATGGGATTGAGATAAATGGGATAACCCA
ATGAGATGAGTGATAATGAGAATGAGATTGCTAACCTTACCTGTC
Right flanking sequence: Indices 602871 -- 603370
CCCACCTGAGTTCAATTCGTTAGGATGAGTTAGATTCGTTGAGTTAGGAGATGCTCACCTTACGA
TTTAGGAGGATCCCCAACCCAATCATGGCACCCAATGTCTTCGTGGATACCCATAACCTTAACCA
ATATTCGTTACCCAAATAGTTGAGTTGTACCCTGAGATGAGTTCCATGAGATAGCATCATGATGT
TGATACGCTACGCATTACGCATTCGTTGTTCCCAGTTACGCTACGCACATGATATACGATGCTGT
GTTGTTACGTTACATGGGATTGATAGGATTGATATCAACATGGGATTGATATAAGTGGGATATAT
CTGAGATAATAAGAGAGGATAATAAGAGAGTTCCTTCGGCACATAACCTGACCTGTGATTCGTTA
GGCACAAAGAATATAACCTTACGAGTTAGGAGGAGGCTTGGACTTACACCTACCTGCATTCGTTG
AGTTGTTATTTAGTTGAATCAGACAGAGTAGCCCCAACCCAATTA
Found at i:603218 original size:13 final size:13
Alignment explanation
Indices: 603200--603225 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
603190 ATATATCTGA
603200 GATAATAAGAGAG
1 GATAATAAGAGAG
603213 GATAATAAGAGAG
1 GATAATAAGAGAG
603226 TTCCTTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.15
Consensus pattern (13 bp):
GATAATAAGAGAG
Left flanking sequence: Indices 602700 -- 603199
TGTTGGGATGCGATGCATGGTGGTTCCTTTGCTAACGATTACATGGATATACGATGCTGTGTTGT
TACATGGGATTGAGATAAATGGGATAACCCAATGAGATGAGTGATAATGAGAATGAGATTGCTAA
CCTTACCTGTCGTTAGGATGAGTTAGATGAGTTAGGATGAGCCCACCTGAGTTCAATTCGTTAGG
ATGAGTTAGATTCGTTGAGTTAGGAGATGCTCACCTTACGATTTAGGAGGATCCCCAACCCAATC
ATGGCACCCAATGTCTTCGTGGATACCCATAACCTTAACCAATATTCGTTACCCAAATAGTTGAG
TTGTACCCTGAGATGAGTTCCATGAGATAGCATCATGATGTTGATACGCTACGCATTACGCATTC
GTTGTTCCCAGTTACGCTACGCACATGATATACGATGCTGTGTTGTTACGTTACATGGGATTGAT
AGGATTGATATCAACATGGGATTGATATAAGTGGGATATATCTGA
Right flanking sequence: Indices 603226 -- 603725
TTCCTTCGGCACATAACCTGACCTGTGATTCGTTAGGCACAAAGAATATAACCTTACGAGTTAGG
AGGAGGCTTGGACTTACACCTACCTGCATTCGTTGAGTTGTTATTTAGTTGAATCAGACAGAGTA
GCCCCAACCCAATTAGTTGAATACCTAACCTGAGTTGTTAGTTGAATACCCAGCCTAGTAGCCCC
AATTAGTTGAATACCCCAATAGTACCTCATAGTACCTCAACCAATACCCTTCGTTGTTATTTAGT
TGAATCAGACCAGACAGAGTGAGATGTGCTTTCCCAATGCTCATGGTAGTTTCCCAACCCAAATG
ATTTGAGTTGTTAGTTGAGATTGCCATAACTAGTTTGTTTTACCTTGAGTTAGCCGGAATATCAA
GTTGATTGCGCTTAGTATATATCCCCTGTTCCCCTTTTCATTGAATCAATCTGAGTCTCCGAGTT
CCTACCCCTTTTCGTTAGTTGATTAGTTGAAATTGGGATGAGTTG
Found at i:603971 original size:18 final size:18
Alignment explanation
Indices: 603957--603993 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
603947 ATGCCTCCTG
603957 CTGACTCATTTCCTCAAC
1 CTGACTCATTTCCTCAAC
603975 CTGACTCATTTCCTCAAC
1 CTGACTCATTTCCTCAAC
603993 C
1 C
603994 AATAAGGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.41, G:0.05, T:0.32
Consensus pattern (18 bp):
CTGACTCATTTCCTCAAC
Left flanking sequence: Indices 603457 -- 603956
TCAACCAATACCCTTCGTTGTTATTTAGTTGAATCAGACCAGACAGAGTGAGATGTGCTTTCCCA
ATGCTCATGGTAGTTTCCCAACCCAAATGATTTGAGTTGTTAGTTGAGATTGCCATAACTAGTTT
GTTTTACCTTGAGTTAGCCGGAATATCAAGTTGATTGCGCTTAGTATATATCCCCTGTTCCCCTT
TTCATTGAATCAATCTGAGTCTCCGAGTTCCTACCCCTTTTCGTTAGTTGATTAGTTGAAATTGG
GATGAGTTGCTATTGGGAGATATCTGAGATAAGATGCTGAGCTAACATAACTGTTAGTTTATTTG
ATATGCCTCCCCTTCGCTTCGCCCTTCGTTGTGAGTTAGTTGATATAAGAAGTTGCTTAGCTGAG
CCTTGCCATAGCGGTAGCGATTGAGTTAGTTTCCAAATCATGCTCCTTATTCCTGAGCCATGAGC
CGAGCCCCTGACGTAGCCTTCCTCAACCTGATGCCATGCCTCCTG
Right flanking sequence: Indices 603994 -- 604493
AATAAGGATTCATAGCGGATTAGTAGCCTTGCCTTCCAAACCAAATCATGGGAGTTCGTTTCCCA
ATTAGTTGATACAATTCGTTGATGAGATTGAGTTGCTAGTTGCTTCGCCTTTCCCCTTGCCCATG
AGTTAGTTAGCCTGAGATAGATCATGACATCTCATACGTTTTCCTCATACGTTTTCTTTGAGTTC
AACTGATAATACCCACCACCCTCCTTCCTATCGTTCCAACCTTAACCCTTATACCTTTTGGTATT
AGATTATTAGCTTGATTGCTTTTAGGCTGTGACAAAACAATGAAACAACCAACCGAACATAGCTT
ACTTTAGACCCACCACCTTACCTACCTCTGAATAACCTACCCTTCTTACCTTCTGACCGAACCTT
TCCTTCCTACCTACATCCTTACCCTCTGAATGAACCTTCCCTTACTAACCTTTCCGTCCGCTTTC
TGTTCGCAGCCACTGGACTAGTACCAGGATGCTGAACTTGATACT
Found at i:604172 original size:13 final size:13
Alignment explanation
Indices: 604154--604179 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
604144 ATCATGACAT
604154 CTCATACGTTTTC
1 CTCATACGTTTTC
604167 CTCATACGTTTTC
1 CTCATACGTTTTC
604180 TTTGAGTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.08, T:0.46
Consensus pattern (13 bp):
CTCATACGTTTTC
Left flanking sequence: Indices 603654 -- 604153
CATTGAATCAATCTGAGTCTCCGAGTTCCTACCCCTTTTCGTTAGTTGATTAGTTGAAATTGGGA
TGAGTTGCTATTGGGAGATATCTGAGATAAGATGCTGAGCTAACATAACTGTTAGTTTATTTGAT
ATGCCTCCCCTTCGCTTCGCCCTTCGTTGTGAGTTAGTTGATATAAGAAGTTGCTTAGCTGAGCC
TTGCCATAGCGGTAGCGATTGAGTTAGTTTCCAAATCATGCTCCTTATTCCTGAGCCATGAGCCG
AGCCCCTGACGTAGCCTTCCTCAACCTGATGCCATGCCTCCTGCTGACTCATTTCCTCAACCTGA
CTCATTTCCTCAACCAATAAGGATTCATAGCGGATTAGTAGCCTTGCCTTCCAAACCAAATCATG
GGAGTTCGTTTCCCAATTAGTTGATACAATTCGTTGATGAGATTGAGTTGCTAGTTGCTTCGCCT
TTCCCCTTGCCCATGAGTTAGTTAGCCTGAGATAGATCATGACAT
Right flanking sequence: Indices 604180 -- 604679
TTTGAGTTCAACTGATAATACCCACCACCCTCCTTCCTATCGTTCCAACCTTAACCCTTATACCT
TTTGGTATTAGATTATTAGCTTGATTGCTTTTAGGCTGTGACAAAACAATGAAACAACCAACCGA
ACATAGCTTACTTTAGACCCACCACCTTACCTACCTCTGAATAACCTACCCTTCTTACCTTCTGA
CCGAACCTTTCCTTCCTACCTACATCCTTACCCTCTGAATGAACCTTCCCTTACTAACCTTTCCG
TCCGCTTTCTGTTCGCAGCCACTGGACTAGTACCAGGATGCTGAACTTGATACTGACTTCAATTA
GTGAGCCATAACTTAAGGAGTGGAAGTGAACTAGTGTGTGTGAGGTCACCGATACTTATTTGATT
CTGATGCTGAGGCTGGCCAGGAGGAGTGTTGGACCGAGAGCACGGAACTCAAGTCGTGTGAGTGA
GGTGGGTGGATTGGTGCACTGATGAACCGAATCAACAATACTACC
Found at i:606045 original size:19 final size:19
Alignment explanation
Indices: 606021--606092 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 19
606011 CAGGCCTCAA
606021 GTGTCCAGGCCTCTATCGT
1 GTGTCCAGGCCTCTATCGT
606040 GTGTCCAGGCCTCCTCTATCGT
1 GTGTCCAGG---CCTCTATCGT
* * **
606062 GTGTCCAGACTTCT-TCAA
1 GTGTCCAGGCCTCTATCGT
606080 GTGTCCAGGCCTC
1 GTGTCCAGGCCTC
606093 AAGTTCGACG
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
18 13 0.30
19 13 0.30
22 18 0.41
ACGTcount: A:0.12, C:0.33, G:0.24, T:0.31
Consensus pattern (19 bp):
GTGTCCAGGCCTCTATCGT
Left flanking sequence: Indices 605521 -- 606020
CACCTGGCATTGCCTCCTCCTGGGGTCAAGTACCGGATGGAGTACCGGCATCTCGTGAATCAACA
CCTGGCAATCATAGGGAACCGATCTAAAAGGGCATAGTTCAGTAATAATCAAATCCACTTTCAGT
GCCCTGATGATAGATTATTATGCCTCGGCCCCCCTAAGAAAGCAATTTCATTATCCAAGAATGGT
GACTGAGGCTGTTGTCTATAACCGGTATCCGATCCAAGTAGCCCAGCTTGAGTATCCAAGGTAGA
GTAACCAAGCCCATCTGAGTAACCAATAACGCGCCCGGGCGCCTGTACTTTAGCACGGTATTGTC
ATAGAAATTGTAAGTATCCGGTATATATACGTATATATAACTCCTCAGCTATGTGATATTGTATA
TGGCACTATTGTGTAAGCTAACTCGCTATGTCCTTACCACGTAATAACGGGATCATCACCACGGC
ATCACGACCACGTCTTAATGTTCCACGTAAATGGCCAGGCCTCAA
Right flanking sequence: Indices 606093 -- 606592
AAGTTCGACGGCATCCCGGAAAGACTCACTCACTAATGGCCTAACTCACCTCATTGTCGCATATC
GTTGTGGAACCTCAAATGGTGTATTGTGTCAAGACCTCTATCGTGTGTCAAGGCCTCTCGTTAAG
GGACTCGGCTTGTTGGGTGAATGATCCAGTGTCTCGTCTATGCGGCAGGTTCTTGCTCCCGGGTC
TCGCGCGGTAGCGCTCCAACCAACCTCATGGGGGCAAGCGGTAGCGATCAGGGGCAAGCGGTAGC
AAACCAAACAACCTCATGGGGGCAAGCGATAGCAATCAGTCATCATCCAGGGGGCAAGCGGTAGC
TATCATTTCCCAATCAAGGGGGCCAGCGGTAGCGATCGATCATCATGTAACCCGCGGTAGCGTTC
CTCATTCCTAAAATCATGGGGGCAAGGCGGCGGTAGCGATTCTTTATTTACCAATCCAGGAGGCA
AGCGGTAGGGATCATTTCCAAATCCAGGGGCAAGTAATGGGGGAT
Found at i:606693 original size:18 final size:18
Alignment explanation
Indices: 606670--606706 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
606660 AGTATCTTCC
606670 CTTGCCAACGCCAATCAA
1 CTTGCCAACGCCAATCAA
606688 CTTGCCAACGCCAATCAA
1 CTTGCCAACGCCAATCAA
606706 C
1 C
606707 ATCAAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.41, G:0.11, T:0.16
Consensus pattern (18 bp):
CTTGCCAACGCCAATCAA
Left flanking sequence: Indices 606170 -- 606669
CAAATGGTGTATTGTGTCAAGACCTCTATCGTGTGTCAAGGCCTCTCGTTAAGGGACTCGGCTTG
TTGGGTGAATGATCCAGTGTCTCGTCTATGCGGCAGGTTCTTGCTCCCGGGTCTCGCGCGGTAGC
GCTCCAACCAACCTCATGGGGGCAAGCGGTAGCGATCAGGGGCAAGCGGTAGCAAACCAAACAAC
CTCATGGGGGCAAGCGATAGCAATCAGTCATCATCCAGGGGGCAAGCGGTAGCTATCATTTCCCA
ATCAAGGGGGCCAGCGGTAGCGATCGATCATCATGTAACCCGCGGTAGCGTTCCTCATTCCTAAA
ATCATGGGGGCAAGGCGGCGGTAGCGATTCTTTATTTACCAATCCAGGAGGCAAGCGGTAGGGAT
CATTTCCAAATCCAGGGGCAAGTAATGGGGGATGCGGGAATGGTAAGCGTTAATGGGTAATGCGT
ATGGAATGCTTCCTGGGCAGTGAAAAAGTGTAATGAGTATCTTCC
Right flanking sequence: Indices 606707 -- 607206
ATCAAAAATGAACTCGACATGCATCGTGGAAACGTCATCGTACCTCATGCATCGAACCTGCTGCT
GCATCGTGTCAAATTATGCATTGTGTAACCTCTCGCATCGTGTCCTCATCTGCTACGTGTCATCA
TCATGCATCGTACCTCGTTGTGGAACCCTTCTTATCGTGGAAACCTCATCTCACTTAACCTAACC
TTCATCGTGTAACCTAACCTGTATCGCTCATGTAAGCTCTACGTGTAGCTCAACGTGTAACCTAC
CTCATTGTGTAACATCAAGCATCGTGTAACCTTCATTGTGTAACCCATTGTTCCATATTGTTAAG
TGAAAGGAGATCAGTAGTTGTAGGAACCCTGTTCTGTATCGTTAAGTGAAAGGGGAAGAATGAAA
GGGTACTAATACTCCTGGATCTCCCTCCTAGGGCTACGAGTGTCACGTACCTCCTTCCTGGCAAT
AAGTGTGTTCTATGCGGAGTAGCTCATTGTGTAACCTCAAGCATC
Found at i:608075 original size:24 final size:25
Alignment explanation
Indices: 608043--608109 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
608033 GTAAACCCTA
608043 ACCTTTAGGTGCTCGACCATT-AGG
1 ACCTTTAGGTGCTCGACCATTAAGG
**
608067 ACCTTTAGGTGCTCGACTGTTAAGG
1 ACCTTTAGGTGCTCGACCATTAAGG
608092 ACCTTTAGGTGCTCGACC
1 ACCTTTAGGTGCTCGACC
608110 CTAAGCCCCC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.30
Consensus pattern (25 bp):
ACCTTTAGGTGCTCGACCATTAAGG
Left flanking sequence: Indices 607543 -- 608042
GGAATCAATCATTATGAACTAACCGGTGCTACTCGCCATCGCTGACTGTAATTCGTTCACACATG
GTACGAACACATACCTCCTGGGCACGTGGGATCAATAACTGTTCACGTCGAACTGGGCACGGGGT
ATTGTGAATGACCCTCACTCACTGACTCACCTAAGTCACGCGTCCTGTACCTTATTCCCGTCCTG
TGCCGTCCCGTACCGGCGGATGTGGCATGTGATGAAGGTGAACGGGTATGCAGGTGAACGGGTAT
CATTTCCTTTTCCTTCGTCTTGGCCAGTGTGAATCTGGACCCCTCTCGGAAGATGTGGGCTATCG
ATCAGTCACTATTCGGCAAGCATAAGAAACCTTCCAATACGGACACAACTGGAGACCTGGGATAT
TATTGATTGATACCCGTCGATTGAGAGAAGGAGAGGTCCGGCAGGGCTCGACTGTTAAGGATGCG
TAAGCAGGCTCGACCATAGCCCCCCCACCCAATAAGTAAACCCTA
Right flanking sequence: Indices 608110 -- 608609
CTAAGCCCCCCCTCCCAATAAGTAAACCCAAGAGGGAGAGGAGGGAAAGATGTGAAAACCTCCGC
CAAGGTGAAAAAGGCTATTGGCAAGACCTAATGCATGAATGAATTATATATGTAATTACGTATAT
AATGAATGACTTGAAGACTTGCTTGTCCTGATCAACCCTCTCATTTTGATCTGCTATTATATATG
TTATTCTGCTTGCCTTATGACTTGCCTACATACATGCTCGTAACTCTGCCTTATGACTTGCCTTT
CAGATCGGGCCCCATCAAATCTTGCTTTTCATGCCTGCCTCCCAAAGCATTCATTAATCAAGTGG
TCTAAGGTAGTACGGTGGGTAAATAGAAGGGGGGGTAGCAGAGAAGGGGCCGCCTCCATTCCCCT
CCTCTCCCCCATCCCGAGAGATATGCGAGAGATGCGAGCTCACATCCTCAATCGAGTGAGGGCCA
TATCCTTTTGGATACCAATGCTGGATACAAAATGGTCTAGATACT
Found at i:609645 original size:78 final size:78
Alignment explanation
Indices: 609514--609669 Score: 249
Period size: 78 Copynumber: 2.0 Consensus size: 78
609504 GCCCCTCCTT
* *
609514 CGACAGCAGATCCGGATACCGTGTCTCCCGGAGTCGCCGAGCCGACCCGCCCCGTCCCTTGAGGG
1 CGACAGCAGATCCGGATACCGTGTCTCCCGGAGTCGCCGAGCCGACCCCCCCCGTCCCTTGAGCG
*
609579 GGATTTGAGCTTC
66 GGATTTAAGCTTC
* * * *
609592 CGACAGCAGATCCGGATACGGTGTCTCCCGGAGTCGGCGAGCCTACCCCCCCCGTCCCTTGATCG
1 CGACAGCAGATCCGGATACCGTGTCTCCCGGAGTCGCCGAGCCGACCCCCCCCGTCCCTTGAGCG
609657 GGATTTAAGCTTC
66 GGATTTAAGCTTC
609670 TCCCCTGGAG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.19
Consensus pattern (78 bp):
CGACAGCAGATCCGGATACCGTGTCTCCCGGAGTCGCCGAGCCGACCCCCCCCGTCCCTTGAGCG
GGATTTAAGCTTC
Left flanking sequence: Indices 609014 -- 609513
CCTAGTCTTTCTCTTCGGATTTGGTTTCTCTTCGTTGATTCTTCCCTCTTTCGGCGTTCCTTTCA
TCAATACCTACCTCACTGGCCTCTCCGGCTATCGCTAAATCATGCCCTAACCAACTACGCCAATA
ATTCAGTCCTCAACATAATATTTTGGTTGAGGGAAGTTTTGCCAAAAATAGGCGTATTGGCCCGG
CGAAAGGTCGCCGGGAAGGGGATGATGATGAAGATCCCCCCACCCCCCCGGTTTCCAGAGGGGGC
AAGAGGCCTTGGGACAGCAAATACATCCCAGGGTCTCTTGGATATCCCTGGCCATCGTGAGCTCG
TGCGCCACCCGATACTCGGGGAGCCAGGGCGCGGCGCCCCGATGGCTGGGTTGCACATCTTCGGG
GAACAGGTGGGCCCAGCCTAGGTAGTTGAAAAAAGAGCCATCGGCGAGGGGCAACCTAATAAACC
CCTCGTGATGTGGCGTTGACGCCGATGCAGCCGCCGCCCCTCCTT
Right flanking sequence: Indices 609670 -- 610169
TCCCCTGGAGAAGCTCGTCCCAATCCAGGGATGGGGCTTCCGGCGAGCGCATCAGCGCTCCGAGT
GATCCCCCGGAAGAGACCTCCGGACCCTCCTCGGAGAGGGGTAAACATAAGGCTATACCGGGGTC
AAGGGCGCCAAATGAGTGGACAGCAATGAACATAAACAGAAGAATCGGACATAGGGTAAGATGAT
CTCTTAAATGCCGGTTAAGTGTGGATAATATGGGTTGTTTGGGAATTGGATTTCTTCTATGTTTT
GTTATAGTCATGTCTCCTATATCACTCTTGTTCCCCAATTCGATCGACGTTATCCCCCTCGACTC
GACGAAGAAATAAGAAACGAGCAAACAGCGAGTCACCTGAGCTACGCGCGGTTCGGGCGTGAAAA
GCCCCCCACCTTGCGCAGCTTTGGAAAGGAGATAATTCGTGAAACTACGTCACTCTCGTAAAATC
TTATTGATTTCACGAGAGAGAACGAAAAGTTGGCGCTATTCGATT
Found at i:614100 original size:38 final size:38
Alignment explanation
Indices: 614058--614133 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
614048 AACGCACCCT
614058 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
1 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
614096 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
1 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
614134 TGTGCTTACG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (38 bp):
CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
Left flanking sequence: Indices 613558 -- 614057
CATAGCTACTTAGATGTTTCAGTTCGCTAAGTCTTTCAAGTCCAAGGAGCGCGGACTAGCCACGG
GGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACGGACGGTATCTCCCCACGGCCTTTC
GCCTTTGGAAGCGTCCTTCCCTCTCAATGCCCGGGCATCCATCCGATGCATTCTTTCCGATACAG
CAGGCATTGAACCTGCTTCACACCGCGGGGATTGGGGTGGGTGGGTAAATAGTACCCTCACCATC
GGAATGGTGAGCCCCTACCGGGCCTCTCCTCTCGATGGCGGCGATGGCGGCCCCCCTCTCAAATA
AGTAACTGCGGCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGTTTGGCTCTCCT
TCACAGTCGAGCCTGCTTGCGCATCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGC
TTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCT
Right flanking sequence: Indices 614134 -- 614633
TGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAA
ATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCG
CCCCTAAGTCATAGGGGGCCTTTCGAATGCCGGCAGCCTTCATATTCATATATTATATATGTCAT
TACGGTCATGATCGAATTCATGACGATCTTCCTGCCTGAATGAGATATGTAATTACGCTTTAGCG
GATCATGCATATATTATATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCTTTAGCG
GATCATGCATATATTATATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCTCTCGAA
TCCAATCATGCATATATTATATATGTCATTATGCTATTTTGAGAGATCGAATCAAGTCAAGTTTC
GGCAAAGCGCCTGAACTCTAAGAACTTTGAGAGAAGCGCTCCCTC
Found at i:614196 original size:126 final size:126
Alignment explanation
Indices: 613971--614221 Score: 502
Period size: 126 Copynumber: 2.0 Consensus size: 126
613961 TGCTTGCGCA
613971 TCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAAT
1 TCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAAT
614036 AGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGC
66 AGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGC
614097 TCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAAT
1 TCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAAT
614162 AGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
66 AGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
614222 TGTGCTTACG
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (126 bp):
TCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAAT
AGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGC
Left flanking sequence: Indices 613471 -- 613970
ATCGAAACGAAAACCTCCGCTGCTTAGTATTTGCCCAATCCGCTTTCGCTCGCCGCTACTAACGG
GGTCTCGGTTGATTCCCCTTCCCATAGCTACTTAGATGTTTCAGTTCGCTAAGTCTTTCAAGTCC
AAGGAGCGCGGACTAGCCACGGGGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACGGA
CGGTATCTCCCCACGGCCTTTCGCCTTTGGAAGCGTCCTTCCCTCTCAATGCCCGGGCATCCATC
CGATGCATTCTTTCCGATACAGCAGGCATTGAACCTGCTTCACACCGCGGGGATTGGGGTGGGTG
GGTAAATAGTACCCTCACCATCGGAATGGTGAGCCCCTACCGGGCCTCTCCTCTCGATGGCGGCG
ATGGCGGCCCCCCTCTCAAATAAGTAACTGCGGCCTTAACAGTCGAGCACCTAAAGGTTAGGGTT
TACTTATTGGTTTGGCTCTCCTTCACAGTCGAGCCTGCTTGCGCA
Right flanking sequence: Indices 614222 -- 614721
TGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTCATAGGGGGCCTTT
CGAATGCCGGCAGCCTTCATATTCATATATTATATATGTCATTACGGTCATGATCGAATTCATGA
CGATCTTCCTGCCTGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGT
CATTATGCATGAATGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGT
CATTATGCATGAATGAATGAGATATGTAATTACGCTCTCGAATCCAATCATGCATATATTATATA
TGTCATTATGCTATTTTGAGAGATCGAATCAAGTCAAGTTTCGGCAAAGCGCCTGAACTCTAAGA
ACTTTGAGAGAAGCGCTCCCTCGGCGTAGAGCTAATTCCCTCCGAGCTTGAGAGCTAGGGGGTCA
GCCCTATCTCAAACAGATATAGAGACAGACATGTGCTTCGGCTAC
Found at i:614202 original size:88 final size:88
Alignment explanation
Indices: 614096--614257 Score: 324
Period size: 88 Copynumber: 1.8 Consensus size: 88
614086 GGCAGTCGAG
614096 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAA
1 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAA
614161 TAGTGAGTGTGCTAACGCACCCT
66 TAGTGAGTGTGCTAACGCACCCT
614184 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAA
1 CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAA
614249 TAGTGAGTG
66 TAGTGAGTG
614258 GCTCCGCCCC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (88 bp):
CTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAA
TAGTGAGTGTGCTAACGCACCCT
Left flanking sequence: Indices 613596 -- 614095
AGTCCAAGGAGCGCGGACTAGCCACGGGGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATC
ACGGACGGTATCTCCCCACGGCCTTTCGCCTTTGGAAGCGTCCTTCCCTCTCAATGCCCGGGCAT
CCATCCGATGCATTCTTTCCGATACAGCAGGCATTGAACCTGCTTCACACCGCGGGGATTGGGGT
GGGTGGGTAAATAGTACCCTCACCATCGGAATGGTGAGCCCCTACCGGGCCTCTCCTCTCGATGG
CGGCGATGGCGGCCCCCCTCTCAAATAAGTAACTGCGGCCTTAACAGTCGAGCACCTAAAGGTTA
GGGTTTACTTATTGGTTTGGCTCTCCTTCACAGTCGAGCCTGCTTGCGCATCCCCTCCTCTCAAA
TAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAAC
GCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAG
Right flanking sequence: Indices 614258 -- 614757
GCTCCGCCCCTAAGTCATAGGGGGCCTTTCGAATGCCGGCAGCCTTCATATTCATATATTATATA
TGTCATTACGGTCATGATCGAATTCATGACGATCTTCCTGCCTGAATGAGATATGTAATTACGCT
TTAGCGGATCATGCATATATTATATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCT
TTAGCGGATCATGCATATATTATATATGTCATTATGCATGAATGAATGAGATATGTAATTACGCT
CTCGAATCCAATCATGCATATATTATATATGTCATTATGCTATTTTGAGAGATCGAATCAAGTCA
AGTTTCGGCAAAGCGCCTGAACTCTAAGAACTTTGAGAGAAGCGCTCCCTCGGCGTAGAGCTAAT
TCCCTCCGAGCTTGAGAGCTAGGGGGTCAGCCCTATCTCAAACAGATATAGAGACAGACATGTGC
TTCGGCTACGCTACGAAGCTTTCTCTTTCACTACCACATGCTCAT
Found at i:614439 original size:65 final size:65
Alignment explanation
Indices: 614365--614557 Score: 323
Period size: 65 Copynumber: 2.9 Consensus size: 65
614355 TCTTCCTGCC
614365 TGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGTCATTATGCATGAA
1 TGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGTCATTATGCATGAA
614430 TGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGTCATTATGCATGAA
1 TGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGTCATTATGCATGAA
* * **
614495 TGAATGAGATATGTAATTACGCTCTCGAATCCAATCATGCATATATTATATATGTCATTATGC
1 TGAATGAGATATGTAATTACGCT-T--TAGCGGATCATGCATATATTATATATGTCATTATGC
614558 TATTTTGAGA
Statistics
Matches: 121, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
65 88 0.73
66 1 0.01
68 32 0.26
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (65 bp):
TGAATGAGATATGTAATTACGCTTTAGCGGATCATGCATATATTATATATGTCATTATGCATGAA
Left flanking sequence: Indices 613865 -- 614364
CGGCCCCCCTCTCAAATAAGTAACTGCGGCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACT
TATTGGTTTGGCTCTCCTTCACAGTCGAGCCTGCTTGCGCATCCCCTCCTCTCAAATAAGTAACC
AAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCT
CCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGCTCCCCTCCTCTCAAATAAGTAACCAAAG
GCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCC
TCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGA
GTGGCTCCGCCCCTAAGTCATAGGGGGCCTTTCGAATGCCGGCAGCCTTCATATTCATATATTAT
ATATGTCATTACGGTCATGATCGAATTCATGACGATCTTCCTGCC
Right flanking sequence: Indices 614558 -- 615057
TATTTTGAGAGATCGAATCAAGTCAAGTTTCGGCAAAGCGCCTGAACTCTAAGAACTTTGAGAGA
AGCGCTCCCTCGGCGTAGAGCTAATTCCCTCCGAGCTTGAGAGCTAGGGGGTCAGCCCTATCTCA
AACAGATATAGAGACAGACATGTGCTTCGGCTACGCTACGAAGCTTTCTCTTTCACTACCACATG
CTCATATATAACTACCACCATAACAATGACTGGTCTTTCTTCTCTCTAGCTAGGAAATCACTATC
ATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAAGTTCAATTGACTTATTGGGTGCCCC
TCTCAAATAAGTAACTAGCGTTGGTCGAGCGATGGCGGCCTTATTAGTCGAGCGTTCGTACCTCA
CCCTGCCGGGGGCACCCTACTAATTTGGCCATTTTCTCTTGGCGGAGGTTTTTCAAGATTCCCCT
ACTATTATAGCATTTTCAGGAGGCGGAGGTTTTCGGAAACGATCA
Found at i:615310 original size:12 final size:12
Alignment explanation
Indices: 615293--615318 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
615283 GGAACTCATA
615293 CCTCGAACTCTG
1 CCTCGAACTCTG
615305 CCTCGAACTCTG
1 CCTCGAACTCTG
615317 CC
1 CC
615319 CTCTAACCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.46, G:0.15, T:0.23
Consensus pattern (12 bp):
CCTCGAACTCTG
Left flanking sequence: Indices 614793 -- 615292
TCTCTCTAGCTAGGAAATCACTATCATTATATATGTCATTACGGCAGCCAATGAATTGGATTCAA
GTTCAATTGACTTATTGGGTGCCCCTCTCAAATAAGTAACTAGCGTTGGTCGAGCGATGGCGGCC
TTATTAGTCGAGCGTTCGTACCTCACCCTGCCGGGGGCACCCTACTAATTTGGCCATTTTCTCTT
GGCGGAGGTTTTTCAAGATTCCCCTACTATTATAGCATTTTCAGGAGGCGGAGGTTTTCGGAAAC
GATCATCGGGAGGGGAATATTGACAGGGCCTACTCAATTGGGCACGGGGCAGGGGCTACTTGGTT
GGATTAGCTCCCGGGCTCGGCTAATCAAATGGGATGGGCTACTCGGCCGATTGACTCAGCTACTC
GAATCAGCTAGGATACTCGGGCTGGAGACACTCATTGACAGGAAGTCACATTGAGCACCTCACAT
AGACGATCATAGACAGACAGAAGGTCATTCCCATAGGAACTCATA
Right flanking sequence: Indices 615319 -- 615818
CTCTAACCTCTCGACCTCGACCCTAGACCTCTACCTCGAACTTCACCTCACTTACCGATACGGAA
CGCTCGTTCCTACTTCGAATGGATTGAAGGAATGAATGACGCGTACGATGCACCTGATGATCATC
GACATACACATGGATGGTTTCATTCACGCTACTCAGGTAGTGACAGTCAGGGAGGGGAGAGCAGG
TACACGCCGTTTTGATACAAGTGATTTTGAGATTGATTATTGGCCTACCAGGCAGGTTTGGAGCA
GGCACAAAGTCTCGTTGCACCAGATCTTTCAAAATATTCTCATTCGCTCTTTTTGATTCATAATA
TTGCATTCTTAGGGGGGCTGAGGCGCGAGCCCTCATCGGGGAACTAAAGTGGATTTGATTCTTAC
TGAAACATGCCCCTTCACGACGTTTCTCTAGGATTGCCAGGTGTCGCTGATACCCAGGCGTCATA
GCCGATAGACAGTTGATCATAGCCAGCAGGTCATTGTCGATCATT
Found at i:615923 original size:14 final size:14
Alignment explanation
Indices: 615904--615930 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
615894 ATGATGGTAC
615904 TTGCCGATACCCAG
1 TTGCCGATACCCAG
615918 TTGCCGATACCCA
1 TTGCCGATACCCA
615931 AGATACATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.37, G:0.19, T:0.22
Consensus pattern (14 bp):
TTGCCGATACCCAG
Left flanking sequence: Indices 615404 -- 615903
GGATTGAAGGAATGAATGACGCGTACGATGCACCTGATGATCATCGACATACACATGGATGGTTT
CATTCACGCTACTCAGGTAGTGACAGTCAGGGAGGGGAGAGCAGGTACACGCCGTTTTGATACAA
GTGATTTTGAGATTGATTATTGGCCTACCAGGCAGGTTTGGAGCAGGCACAAAGTCTCGTTGCAC
CAGATCTTTCAAAATATTCTCATTCGCTCTTTTTGATTCATAATATTGCATTCTTAGGGGGGCTG
AGGCGCGAGCCCTCATCGGGGAACTAAAGTGGATTTGATTCTTACTGAAACATGCCCCTTCACGA
CGTTTCTCTAGGATTGCCAGGTGTCGCTGATACCCAGGCGTCATAGCCGATAGACAGTTGATCAT
AGCCAGCAGGTCATTGTCGATCATTGCCGGTAGTCATTGCTGATAGCCGGTTCTCTTTGCCTGAT
GGTGGTCACTGCTGCTGATAGTCGCTAGTCGTTGAATGATGGTAC
Right flanking sequence: Indices 615931 -- 616430
AGATACATTCTCACACGGTCATCGCCAGTCAGCCGAGAGTTGATCATACCCCCATTGCCCATCAT
ATCCGAGTCACCCTCACCACATGCCACATCACCCAACACGGGAAGGTACGGGCCCCATCTTATCT
AGGGGTGAGGCCCCTACTATTATAATGGGCAGAGGGTTCAGAGCCGATTGCCAATCATTCCCAAA
TGGTCACTGACAGGATGCCGATCAACCCTCATTCCCAGAAGGTGCCGATAGACACGAAGGAGGCC
TTGTCGGGAGGCCTAGCTGCCTGAACCCACTGATTAGGACCGCATTTCACTGAACGCTACGGAAC
AATCGTTCCTACCTCGATTGGATGACATCACAATGCATTACTTACGATGCACCTGTGAAGGAAGG
GTAATACACCTCATTGACAAACACCTGTGCTGCCGATGACAGGACTCTTTGCCGCTAGTCGATCC
AGGTAGGCGTCGATGCCGGTACTCGATCCAGGTGTTGATGCTGCT
Found at i:618865 original size:24 final size:24
Alignment explanation
Indices: 618832--618883 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
618822 TGCTTGCGCA
618832 TCCTTATGGTCGAGCACCTAAAGG
1 TCCTTATGGTCGAGCACCTAAAGG
*
618856 TCCTTTTGGTCGAGCACCTAAAGG
1 TCCTTATGGTCGAGCACCTAAAGG
618880 TCCT
1 TCCT
618884 ATTCTTGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (24 bp):
TCCTTATGGTCGAGCACCTAAAGG
Left flanking sequence: Indices 618332 -- 618831
TCTCCCGGGGGTCGAGCGATTTCATTCCAGTATAGATCTTTTTTTGAACCTAGAGTCATTCCAGG
AAATGAAATATTCAGCCTTTTTTAGCCATTCGCCAGAAGCCTCTCACCTTTAGCCTTTAGCCAAG
CCCACCACACCACCTCCTCATCAGAGCCGCCACGCCACGCTACGCACGCCTACCTGGCTGCTGGG
TCCAACCAACTCGCCGGGCCCCATGACCAGAGAGAGAGAGAGAATCCGATTGATACACCACTCAA
CTTTGGCTTATCCTTAAGATGGCGGAGGGTTTCACATCTTTCCCTCCTCTTCTTGCAATTTTAGG
AGGCGGAGGTTTTCACATCTTTCTCTCCTCTCCCTCTCCCTCTTGGGTTTACTTATTGCCCCACC
CAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCACCTAAAGGTTAGGGT
TTACTTATTGGTTTGGGGGGTTTCACAGTCGAGCCTGCTTGCGCA
Right flanking sequence: Indices 618884 -- 619383
ATTCTTGCCATTTGAGGAGGCGGAGGTTAGATTTCGATGGCGGCCTTATAAATGACTGTCCTTCC
TTTCAACCCGACCTTTCAACCCAACTGTTAACCTTTCAACCCGGCTGTCCTTCCTTCCCCACCCA
AAGAGTTAAGAGAAGGTGGTGCAGCTTCCTCCTCCCACTCAATAAGAATATACAATAGTAATAGT
GGTGAGGGCAGTAGTAGAAGAGAACCATCCAGTAGAAGTGCCATCCGTTAGAAGAGCCAGTATAA
GATATCCATCCTTCCTGAAGCTCTCCATTGTCCTTCTAGAGATATGAATGGGGTTGGGTTAGGCT
GCCCGTTAATACATGAATGGGTTAGGCGGCTCAACCAATCAAATCAACCAAGTAGCTGAGTAAAC
GCATGGGTTAGGCATCCTTCCTGAGGCTCTTATAAAGAACTCATCCTTCCAGAGAAATGAATAGG
AACGAGCCTGGCCTGCACCCACTCAAATGATTGAATGAATGGCCT
Found at i:620200 original size:18 final size:18
Alignment explanation
Indices: 620160--620205 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
620150 GCGGGGAACC
* * *
620160 ACCCGTACTTAGCTTTTA
1 ACCCGTAATTAGCTATGA
*
620178 CCCCGTAATTAGCTATGA
1 ACCCGTAATTAGCTATGA
620196 ACCCGTAATT
1 ACCCGTAATT
620206 GAATAGTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (18 bp):
ACCCGTAATTAGCTATGA
Left flanking sequence: Indices 619660 -- 620159
TTAGAATTAGGCAGTTCGATAGCACTTATCTGGGTCAATAGGTAAGGAGATCCCCCGGATTGCTG
CTATGGTGATGAGACAGATCGATAGCAGTTCTAGCCCATGAACATACTCACAAGTCGAACACACC
GAATCCAGACCTTTGGGTTCGATCGGCTTTCTCCTTACACTCACTCACATACTGATAGCGCTGAA
TTGACTCTTTTAGCACCTAAGTCTGGAGGAGGCTTTTCTCCATTTCTTCCTCGATCTCGATCGCA
CAGAAGTACTTAGCCAGCTCAGAAGTACTTAGCTTTTACCTCGTAATTAGCATAGCCACAATATT
AGTTCGAGTCATATGGGTAATGGGTAATGGGAGTAGTTTGGGTATAAGATTCGATATTTCCCAGC
TCCGCAGGAACAAGTCTAAAGAGTATATCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGAC
CTTCCCGTAATTAGCTTTTACCTCGTAATTAGTAGGCGGGGAACC
Right flanking sequence: Indices 620206 -- 620705
GAATAGTAAGCCACAATATTGACTAGCTCCGCAGGAACAAGTCTAAAGAATCTATCCTTGTAGCT
CTGAACCCGCCACTTTCTTAGTTCTGAACCCGTAATTAGCTCTGAACCCGTAATTAGTTATGAAC
CCGATCGCTCATAAGGTAGCGAGGAAGCAGCTCCGCAGGATCAGTATAAAGAATCTCTCCTTCGG
CTGATGGGAGATCTTAAAGTGACAGGATAGAAAGTGGTAGAACCAGTTCCCCTATTTTCCCACTG
GCGTGAGAAGGCAAGTTACTATACCCCTTACGCTTCTAGATTTCCTACCCTTACGTACTTCCTAC
CCTTACGCACTTATATGTCCCCTTTCGCCCTTATATTTCCTACTATCTATTCAGGAGATAAGTAC
TTCTTAGGTGAAAGTGTTCATATTCTCTCCTCTCCTATGGTTCCATTATTCAGGAGAGAAGTAGT
TCTGAGAGCTAATAGGTTGATGTACACTATGATTCCTCATATCTC
Found at i:620314 original size:18 final size:18
Alignment explanation
Indices: 620288--620338 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
620278 CGCCACTTTC
620288 TTAGTTCTGAACCCGTAA
1 TTAGTTCTGAACCCGTAA
*
620306 TTAGCTCTGAACCCGTAA
1 TTAGTTCTGAACCCGTAA
*
620324 TTAGTTATGAACCCG
1 TTAGTTCTGAACCCG
620339 ATCGCTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (18 bp):
TTAGTTCTGAACCCGTAA
Left flanking sequence: Indices 619788 -- 620287
CCGAATCCAGACCTTTGGGTTCGATCGGCTTTCTCCTTACACTCACTCACATACTGATAGCGCTG
AATTGACTCTTTTAGCACCTAAGTCTGGAGGAGGCTTTTCTCCATTTCTTCCTCGATCTCGATCG
CACAGAAGTACTTAGCCAGCTCAGAAGTACTTAGCTTTTACCTCGTAATTAGCATAGCCACAATA
TTAGTTCGAGTCATATGGGTAATGGGTAATGGGAGTAGTTTGGGTATAAGATTCGATATTTCCCA
GCTCCGCAGGAACAAGTCTAAAGAGTATATCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGG
ACCTTCCCGTAATTAGCTTTTACCTCGTAATTAGTAGGCGGGGAACCACCCGTACTTAGCTTTTA
CCCCGTAATTAGCTATGAACCCGTAATTGAATAGTAAGCCACAATATTGACTAGCTCCGCAGGAA
CAAGTCTAAAGAATCTATCCTTGTAGCTCTGAACCCGCCACTTTC
Right flanking sequence: Indices 620339 -- 620838
ATCGCTCATAAGGTAGCGAGGAAGCAGCTCCGCAGGATCAGTATAAAGAATCTCTCCTTCGGCTG
ATGGGAGATCTTAAAGTGACAGGATAGAAAGTGGTAGAACCAGTTCCCCTATTTTCCCACTGGCG
TGAGAAGGCAAGTTACTATACCCCTTACGCTTCTAGATTTCCTACCCTTACGTACTTCCTACCCT
TACGCACTTATATGTCCCCTTTCGCCCTTATATTTCCTACTATCTATTCAGGAGATAAGTACTTC
TTAGGTGAAAGTGTTCATATTCTCTCCTCTCCTATGGTTCCATTATTCAGGAGAGAAGTAGTTCT
GAGAGCTAATAGGTTGATGTACACTATGATTCCTCATATCTCTATTATTTGAAAGAATATTTCCT
GAAAAGGAGGAAGGGTTGCTTTCGCTTACACTCTCCTTGAACCCTTGGGGATAACCAGACTACGA
TTGGCCAGAGAATAGAAATGAGGTTAACATATAAGTGAGAAACCG
Found at i:620529 original size:17 final size:17
Alignment explanation
Indices: 620507--620542 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
620497 GCTTCTAGAT
*
620507 TTCCTACCCTTACGTAC
1 TTCCTACCCTTACGCAC
620524 TTCCTACCCTTACGCAC
1 TTCCTACCCTTACGCAC
620541 TT
1 TT
620543 ATATGTCCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.42, G:0.06, T:0.36
Consensus pattern (17 bp):
TTCCTACCCTTACGCAC
Left flanking sequence: Indices 620007 -- 620506
GGTAATGGGAGTAGTTTGGGTATAAGATTCGATATTTCCCAGCTCCGCAGGAACAAGTCTAAAGA
GTATATCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTCCCGTAATTAGCTTTTACC
TCGTAATTAGTAGGCGGGGAACCACCCGTACTTAGCTTTTACCCCGTAATTAGCTATGAACCCGT
AATTGAATAGTAAGCCACAATATTGACTAGCTCCGCAGGAACAAGTCTAAAGAATCTATCCTTGT
AGCTCTGAACCCGCCACTTTCTTAGTTCTGAACCCGTAATTAGCTCTGAACCCGTAATTAGTTAT
GAACCCGATCGCTCATAAGGTAGCGAGGAAGCAGCTCCGCAGGATCAGTATAAAGAATCTCTCCT
TCGGCTGATGGGAGATCTTAAAGTGACAGGATAGAAAGTGGTAGAACCAGTTCCCCTATTTTCCC
ACTGGCGTGAGAAGGCAAGTTACTATACCCCTTACGCTTCTAGAT
Right flanking sequence: Indices 620543 -- 621042
ATATGTCCCCTTTCGCCCTTATATTTCCTACTATCTATTCAGGAGATAAGTACTTCTTAGGTGAA
AGTGTTCATATTCTCTCCTCTCCTATGGTTCCATTATTCAGGAGAGAAGTAGTTCTGAGAGCTAA
TAGGTTGATGTACACTATGATTCCTCATATCTCTATTATTTGAAAGAATATTTCCTGAAAAGGAG
GAAGGGTTGCTTTCGCTTACACTCTCCTTGAACCCTTGGGGATAACCAGACTACGATTGGCCAGA
GAATAGAAATGAGGTTAACATATAAGTGAGAAACCGCTTAAATGGGAATTCAAACGCACTTTCTC
GCCACTTTCCCCCCCACAGAGTGGGACCAATCAAGGTGCGAAGCCGCTCTCCCGACGCCCCCCGT
CCACCTAGTGAAACCAAAGGGGAGGTCATCTTTCGTCCTTTTTTTACTGACGAATGGTACTATCT
GTCCTTATTTGGAGCTATATGGGCGTGGCCTGCCTGACTACATTA
Found at i:622164 original size:27 final size:26
Alignment explanation
Indices: 622116--622174 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
622106 CATCCTTAGG
*
622116 GTCGAG-CACCTAAAGGTCCTTATCA
1 GTCGAGCCACCTAAAGGTCCTTAACA
*
622141 GTCGAGCCCCCTAAAGGGTCCTTAACA
1 GTCGAGCCACCTAAA-GGTCCTTAACA
622168 GTCGAGC
1 GTCGAGC
622175 ATGCTTGCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 6 0.20
26 7 0.23
27 17 0.57
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (26 bp):
GTCGAGCCACCTAAAGGTCCTTAACA
Left flanking sequence: Indices 621616 -- 622115
TGGTACCTGGGCCTGAAAATAGACTCTAACCTTCTCTGGATTGCCTTGCCTCCGCATAACTGAAG
GAAGCTAGAACCTGTGAGCTGCCTGTGAACCTGTATAAAGAATATGCATGATGAGCAAAGCGAGC
CCCCCGAAACGGTATTGCCCATCGACCAGAAAGACCAGCCCAGTCCTTCCCTTCCTTCCTTCATA
AGTTCGACCACTCATTCCCTAACATATTAGTTGGCATTACCCATAGCAGCTCATTGAAACCAGCC
CTAGAACCTCAAACTAGACCTAGAACTTGAACTCTTACTTATCAAAACCTCCGCCTCCTCTCCTT
ATCAGTCGAGTCACTAACGTACCTCTCCCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTC
TCGATGGCGGCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGG
Right flanking sequence: Indices 622175 -- 622674
ATGCTTGCGCATCCTCTCCTCTCCCTCTCCCTATGGTCGAGCACCTAAAGGTCCTATGGTCGAGC
CCCCTAAAGGGTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTT
ATTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCC
TTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTG
GGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCG
CATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCT
TATGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAAC
AGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGT
Found at i:622234 original size:23 final size:25
Alignment explanation
Indices: 622204--622254 Score: 79
Period size: 23 Copynumber: 2.1 Consensus size: 25
622194 TCTCCCTCTC
622204 CCTATGGTCGAG-CACCTAAA-GGT
1 CCTATGGTCGAGCCACCTAAAGGGT
*
622227 CCTATGGTCGAGCCCCCTAAAGGGT
1 CCTATGGTCGAGCCACCTAAAGGGT
622252 CCT
1 CCT
622255 CTCCTCTCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 12 0.48
24 7 0.28
25 6 0.24
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (25 bp):
CCTATGGTCGAGCCACCTAAAGGGT
Left flanking sequence: Indices 621704 -- 622203
TGTGAACCTGTATAAAGAATATGCATGATGAGCAAAGCGAGCCCCCCGAAACGGTATTGCCCATC
GACCAGAAAGACCAGCCCAGTCCTTCCCTTCCTTCCTTCATAAGTTCGACCACTCATTCCCTAAC
ATATTAGTTGGCATTACCCATAGCAGCTCATTGAAACCAGCCCTAGAACCTCAAACTAGACCTAG
AACTTGAACTCTTACTTATCAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCACTAACGTACC
TCTCCCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCC
CTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCG
AGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGG
TCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCCTCTC
Right flanking sequence: Indices 622255 -- 622754
CTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGT
TATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCC
CCTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTG
GTCGAGCCCTGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTC
CCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGAGCACCT
AAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTG
CGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGG
GTCCTTATCAGTCGAGCCTGCTTACGCATCCTTATCAGTCGAGCC
Found at i:622399 original size:27 final size:26
Alignment explanation
Indices: 622351--622418 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 26
622341 CATCCTTAGG
622351 GTCGAGCACCTAAA-GGTCCTTATCA
1 GTCGAGCACCTAAAGGGTCCTTATCA
*
622376 GTCGAGCCCCCTAAAGGGTCCTTATCA
1 GTCGAG-CACCTAAAGGGTCCTTATCA
622403 GTCGAGCACCTAAAGG
1 GTCGAGCACCTAAAGG
622419 TTCAATTTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
25 6 0.15
26 16 0.41
27 17 0.44
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (26 bp):
GTCGAGCACCTAAAGGGTCCTTATCA
Left flanking sequence: Indices 621851 -- 622350
CCATAGCAGCTCATTGAAACCAGCCCTAGAACCTCAAACTAGACCTAGAACTTGAACTCTTACTT
ATCAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTCCCGCTGGTCGAGC
GTGCTCCGCATCCTCTCCTCTCCTCTCGATGGCGGCCCTCTCCTCTCCCTCTCCTTAACAGTCGA
GCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCC
TTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCA
TGCTTGCGCATCCTCTCCTCTCCCTCTCCCTATGGTCGAGCACCTAAAGGTCCTATGGTCGAGCC
CCCTAAAGGGTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTA
TTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGG
Right flanking sequence: Indices 622419 -- 622918
TTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTAACA
GTCGAGCATGCTTGCGCATCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCG
AGCACCTAAAGGTCCTTATGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTC
TCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTTACGCATCCTTA
TCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCACACGT
TACCTCTCCCATAGGTCGAGAGTTCGACAGGCTCACGATGGCGGCCTTAGCAGTCGAGCCCCTGT
CGGTTAGGGTTTGCTTATTGGGTGGGGGGCTGCCGGACCTTATGG
Found at i:622573 original size:24 final size:24
Alignment explanation
Indices: 622515--622588 Score: 132
Period size: 24 Copynumber: 3.1 Consensus size: 24
622505 TCTCCCTCTC
*
622515 CCTTAAGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
622539 CC-TATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
622562 CCTTATGGTCGAGCACCTAAAGGT
1 CCTTATGGTCGAGCACCTAAAGGT
622586 CCT
1 CCT
622589 CTCCTCTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 22 0.46
24 26 0.54
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (24 bp):
CCTTATGGTCGAGCACCTAAAGGT
Left flanking sequence: Indices 622015 -- 622514
GCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGG
GGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCG
AGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCCCTCTCCCTATG
GTCGAGCACCTAAAGGTCCTATGGTCGAGCCCCCTAAAGGGTCCTCTCCTCTCCCTCTCCTTAAC
AGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTAC
GCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGT
CGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCCTGCCGGGGGCA
TCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTC
Right flanking sequence: Indices 622589 -- 623088
CTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTT
AACAGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATC
AGTCGAGCCTGCTTACGCATCCTTATCAGTCGAGCCGATGGCGGCCTTATTAGTCGAGCGTGCTT
ACGCACCCTGACGGACCTCACACGTTACCTCTCCCATAGGTCGAGAGTTCGACAGGCTCACGATG
GCGGCCTTAGCAGTCGAGCCCCTGTCGGTTAGGGTTTGCTTATTGGGTGGGGGGCTGCCGGACCT
TATGGTCGAGCAACTGCTGGCTACCCTGCGTAGACTGAGTATAACCCTAAGAATTTGGCCATTTT
CACCCCTATTTATATATATATAGCGCGGAGGTTTTTCAAGATTCCCCTACTATTATAGCATTTTC
AGGAGGCGGAGGTATGGTGAGGGCCACTGGCTCTATTTCTGGTGC
Found at i:622673 original size:89 final size:89
Alignment explanation
Indices: 622569--622753 Score: 334
Period size: 89 Copynumber: 2.1 Consensus size: 89
622559 GGTCCTTATG
622569 GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTC
1 GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTC
*
622634 GAGCATGCTTGCGCATCCTTAACA
66 GAGCATGCTTACGCATCCTTAACA
*
622658 GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTC
1 GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTC
* *
622723 GAGCCTGCTTACGCATCCTTATCA
66 GAGCATGCTTACGCATCCTTAACA
622747 GTCGAGC
1 GTCGAGC
622754 CGATGGCGGC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 92 1.00
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.25
Consensus pattern (89 bp):
GTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTC
GAGCATGCTTACGCATCCTTAACA
Left flanking sequence: Indices 622069 -- 622568
TATTGGGTTGGGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTC
CTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCTCTCC
CTCTCCCTATGGTCGAGCACCTAAAGGTCCTATGGTCGAGCCCCCTAAAGGGTCCTCTCCTCTCC
CTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTATCAGTCG
AGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTCGAGCCCCCTAAAGGG
TCCTTATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGGGCGTTGGTCGAGCCC
TGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTCCCTCTCCCTTAAGGT
CGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATG
Right flanking sequence: Indices 622754 -- 623253
CGATGGCGGCCTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCACACGTTACCTCTCCC
ATAGGTCGAGAGTTCGACAGGCTCACGATGGCGGCCTTAGCAGTCGAGCCCCTGTCGGTTAGGGT
TTGCTTATTGGGTGGGGGGCTGCCGGACCTTATGGTCGAGCAACTGCTGGCTACCCTGCGTAGAC
TGAGTATAACCCTAAGAATTTGGCCATTTTCACCCCTATTTATATATATATAGCGCGGAGGTTTT
TCAAGATTCCCCTACTATTATAGCATTTTCAGGAGGCGGAGGTATGGTGAGGGCCACTGGCTCTA
TTTCTGGTGCTTCCACCTTTCATTAGTAAATTGACTATTCCCCAATCGGCGCCTCTGCTGTTTTC
ACCTTGGCTGTCTCTTTCTTTGCTGCTATCTCTTATGGTTCTGGTTCCTCAACCCAAGCTACTAT
CTTTGCTCGGTCAACGAAGTCAATTTCATCGACTGATGAAAGGAA
Found at i:622722 original size:27 final size:27
Alignment explanation
Indices: 622684--622754 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
622674 TCCTCTCCTC
**
622684 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTATCAGTCGAGCCCCCTAAAGCA
** * *
622711 TCCTTATCAGTCGAGCCTGCTTACGCA
1 TCCTTATCAGTCGAGCCCCCTAAAGCA
622738 TCCTTATCAGTCGAGCC
1 TCCTTATCAGTCGAGCC
622755 GATGGCGGCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.27
Consensus pattern (27 bp):
TCCTTATCAGTCGAGCCCCCTAAAGCA
Left flanking sequence: Indices 622184 -- 622683
CATCCTCTCCTCTCCCTCTCCCTATGGTCGAGCACCTAAAGGTCCTATGGTCGAGCCCCCTAAAG
GGTCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTG
GGGGGTTATCAGTCGAGCCTGCTTACGCATCCTTAGGGTCGAGCACCTAAAGGTCCTTATCAGTC
GAGCCCCCTAAAGGGTCCTTATCAGTCGAGCACCTAAAGGTTCAATTTACTTATTGGGTGGGGGG
GCGTTGGTCGAGCCCTGCCGGGGGCATCCTCTCCTTAACAGTCGAGCATGCTTGCGCATCCTCTC
CCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTATGGTCGAGCACCTAAAGGTCCTTATGGTCGA
GCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTAACAGTCGAGCA
TGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 622755 -- 623254
GATGGCGGCCTTATTAGTCGAGCGTGCTTACGCACCCTGACGGACCTCACACGTTACCTCTCCCA
TAGGTCGAGAGTTCGACAGGCTCACGATGGCGGCCTTAGCAGTCGAGCCCCTGTCGGTTAGGGTT
TGCTTATTGGGTGGGGGGCTGCCGGACCTTATGGTCGAGCAACTGCTGGCTACCCTGCGTAGACT
GAGTATAACCCTAAGAATTTGGCCATTTTCACCCCTATTTATATATATATAGCGCGGAGGTTTTT
CAAGATTCCCCTACTATTATAGCATTTTCAGGAGGCGGAGGTATGGTGAGGGCCACTGGCTCTAT
TTCTGGTGCTTCCACCTTTCATTAGTAAATTGACTATTCCCCAATCGGCGCCTCTGCTGTTTTCA
CCTTGGCTGTCTCTTTCTTTGCTGCTATCTCTTATGGTTCTGGTTCCTCAACCCAAGCTACTATC
TTTGCTCGGTCAACGAAGTCAATTTCATCGACTGATGAAAGGAAC
Found at i:625012 original size:16 final size:16
Alignment explanation
Indices: 624988--625020 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
624978 CTCTTGGTAG
*
624988 GTGTTACTGGCCTGGT
1 GTGTGACTGGCCTGGT
625004 GTGTGACTGGCCTGGT
1 GTGTGACTGGCCTGGT
625020 G
1 G
625021 AGACTGGACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.18, G:0.42, T:0.33
Consensus pattern (16 bp):
GTGTGACTGGCCTGGT
Left flanking sequence: Indices 624488 -- 624987
GCCCAACCAACCCGTGTCGAGAATTAGGATCGAGATAAGAAAGCGCCTACCTGACCCACCTCCGG
ACTATTTGTGGGGCACGATATATCAATGGCGTTGGCTACGGCAGATAATACAATTTCACTTTATG
TTAACCTGCCCAGGAAGAAGCTCTAATGCTTAACACCGTGTAATCAGGACTTACGCTTCGACACT
TTCACCTTTCTTTCTCCCAGCCCTCGGGTTCAACCAGCTCCTAAGCTAACAAGCTAACAAGCTCC
TCATCCAACTTCTAAACATCTCTTTTCTTTCCTAAGCTCCTAAAATGGGTAATCAACGTATATAA
CGTGAAGTGTTATGAGCACCTACCTAGCTGGTATGGATCGTTCCGTTGTGGTTGGACTGGGGTTG
GTTTCGCCAGGGCTCTTGCTCCTTACTGGGTTGTGGAGTTTGGTGGGCTTTCCAGGCAAGGTAAG
AAAGCAAGATCTATTATCCGGGCAAGAGAATATCTCTCTTGGTAG
Right flanking sequence: Indices 625021 -- 625520
AGACTGGACTGTCTAGGTCCGCCTTTGTTGGGCAGGTTGGAGCCCATGGTGATACTGGTGGGAGG
TGTGTTGGTCCTGGACTGGTGGAGTTTTGGTGTAGGCTGTTGGTAAAATGGGGTATATCAATAAA
TCCAGTCAATCCAATAAAAGAAAATCAATCGATCCAGCAATAAGCACGTAAGTAAGCCTGGCGAT
TCTTGATTGGACCAGCCCGTATTCCTTTCATCTCCCAGCCCGGGTTCAACCAGCCCCCACGCGTT
CTAGCATAACGGGTTGTTGGCCCAGCTTCGGCTTATTATTTCGACCAGCCTGGTGGGATTAGTTC
GACCAGCTCTCCTCGGTTTCAACCAGCTCTCGGGTTCGCCCAGCCCAGGTTGATTGGACCCGCCC
TCACACTACTACGTTGGCTGTTGTCCGTCTAGTGTACTGCCTTACCTCCAACAATGTTTGCCATC
AATCTCATCAATCGATCGCTATCAAGCATCGACCTCCCATCCCAT
Found at i:626412 original size:15 final size:15
Alignment explanation
Indices: 626392--626425 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
626382 ATCATCCATC
626392 GTGTCTGCACTAATT
1 GTGTCTGCACTAATT
*
626407 GTGTCTGTACTAATT
1 GTGTCTGCACTAATT
626422 GTGT
1 GTGT
626426 AACCTCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.44
Consensus pattern (15 bp):
GTGTCTGCACTAATT
Left flanking sequence: Indices 625892 -- 626391
TGTATGTCCTCCTGTTGAACTGGGGCAGTCAAATCACCGGAAGGCAGTTGAGAAAGAACATAAGG
CAGTCGAAACGTAACATAAGAAGATATGACTCACTAACTAACGTCCTAACTCACCGGATTGCTGC
ATATATGGAACCGGTGTATTTTGTTAAGACCTATATTTTGAGTCCAGGCCTGTCGTCAACCCCGC
TCTTGTTTGAGGTATAGCTCTCCCTCACCATATGAATAGTGAGTGACCCCTATGAAGAAGTAAGG
GCCCTGCCCCTGCCCCAAGGATTATTCCCCCTTCGATTATTCCCCATTGAGTAGCTCCACTTAGT
AGCTCACATAATACTCATTCCTGGCAAGTCTATGCATCACTCGAAGCTAATTGCTCGTACCTAAT
TGCTAATCGTGTGATCGAACCTCTACCTACGTCCTCATCATGTGTCGTGTAATCATCAGCTACGT
GTCAGCTACGTGTCGTCATCCTGTATCGTGTAATCATCATCCATC
Right flanking sequence: Indices 626426 -- 626925
AACCTCATAGGTAACCACCTCCATCGGTAAGCAAACCTAATGGGAAAAACCTACCTGATTGTGAA
AACCTCATTGTGTAACCATTGTATCGTATCGTAAAGTGAAAGGGGCTTATTGAAAGGGTATGAAT
GAAAGGGGGATTGGGTAATGGTAGAATGCATATTGAACGGAATGCATTAATGGGATTGGGAAATG
GGGAATGGTGGGGAATGCGGGAGAATGCGGGGGCTATCAGACTGGGGCTCACCAAGGGAATCGGC
ACCACATCCTGATGGGTATGATCAACTGTTCACACACAAAGAACCACTACCTCCTGGGGGGATTG
AGAAACTGTTCACGCACATAGAATCGCTTCTTGTTCACGTTGAACTGGTAAACACGTAGGATCAC
CACCACCACAACCACCACCTACAGGGCACGGGGTATTGAGAACTGGTCACGTCCAACAACTGGTA
ACGGGGGATCATCTCCAACAGGTGGGCACGTACAAATTGAAATAC
Found at i:627096 original size:17 final size:17
Alignment explanation
Indices: 627070--627120 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
627060 GAGCTTAATG
*
627070 CACGTTACTAGAGCTTC
1 CACGTGACTAGAGCTTC
*
627087 CACGTGACTAGAACTTC
1 CACGTGACTAGAGCTTC
*
627104 CATGTGACTAGAGCTTC
1 CACGTGACTAGAGCTTC
627121 TGGCAAGGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (17 bp):
CACGTGACTAGAGCTTC
Left flanking sequence: Indices 626570 -- 627069
GTAATGGTAGAATGCATATTGAACGGAATGCATTAATGGGATTGGGAAATGGGGAATGGTGGGGA
ATGCGGGAGAATGCGGGGGCTATCAGACTGGGGCTCACCAAGGGAATCGGCACCACATCCTGATG
GGTATGATCAACTGTTCACACACAAAGAACCACTACCTCCTGGGGGGATTGAGAAACTGTTCACG
CACATAGAATCGCTTCTTGTTCACGTTGAACTGGTAAACACGTAGGATCACCACCACCACAACCA
CCACCTACAGGGCACGGGGTATTGAGAACTGGTCACGTCCAACAACTGGTAACGGGGGATCATCT
CCAACAGGTGGGCACGTACAAATTGAAATACACGTACTAGAGCTTCATTCATGCCCCGGCGGAAT
AGACTTCATTCCTGCATCGACAAGAGCTTAATACACTCCACTGAGTATAGGTTTGATGAGTGCTT
CCCCATGGAGTAGAGCTTCATTCCGGCATCGACAAGAGCTTAATG
Right flanking sequence: Indices 627121 -- 627620
TGGCAAGGACCTTCTATCAGCAATGGCTATTGACAGTGCTTATGGGCTATGACTGGCGTATGGTC
CTCAAACAGGTGCATCGTAAGTAATGCATCGTCATGGCATCCAGTGGAGGTAGTAACTCCTGTTC
CGTAGGGGTAATCCCAGTCCCTATGGGTAAGTTCTCCTCTCGTTAGACGTGGGCTGTCAATCGCC
CCTAAGTAATATGGGCCGTTGACCACCCCTCTGTCGGATGAGTGCTGTAGTCCGTGGGAACCCCT
CTCATGTGGGCCCTCAATCAATAACTCTCTGGCATAACCCACTTCCCTGACTGTCCTCTACCTGA
CTAGCACAATGTTTGTTTATGGCGCATGATCCTCCTCAACAGGTGAATCGTATATAACGAGCAGT
GTAACCCACTCTTGTCGTGAAGAAGGTATCGCTCACCTAGTTGCATATATTCGTTTGTGGCACCT
CATTGGGGCACCTCATTGGGGCACCTCATTGTAGCACATATTCAT
Found at i:627612 original size:13 final size:13
Alignment explanation
Indices: 627569--627606 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
627559 ATTCGTTTGT
627569 GGCACCTCATTGG
1 GGCACCTCATTGG
627582 GGCACCTCATTGG
1 GGCACCTCATTGG
627595 GGCACCTCATTG
1 GGCACCTCATTG
627607 TAGCACATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.32, G:0.29, T:0.24
Consensus pattern (13 bp):
GGCACCTCATTGG
Left flanking sequence: Indices 627069 -- 627568
GCACGTTACTAGAGCTTCCACGTGACTAGAACTTCCATGTGACTAGAGCTTCTGGCAAGGACCTT
CTATCAGCAATGGCTATTGACAGTGCTTATGGGCTATGACTGGCGTATGGTCCTCAAACAGGTGC
ATCGTAAGTAATGCATCGTCATGGCATCCAGTGGAGGTAGTAACTCCTGTTCCGTAGGGGTAATC
CCAGTCCCTATGGGTAAGTTCTCCTCTCGTTAGACGTGGGCTGTCAATCGCCCCTAAGTAATATG
GGCCGTTGACCACCCCTCTGTCGGATGAGTGCTGTAGTCCGTGGGAACCCCTCTCATGTGGGCCC
TCAATCAATAACTCTCTGGCATAACCCACTTCCCTGACTGTCCTCTACCTGACTAGCACAATGTT
TGTTTATGGCGCATGATCCTCCTCAACAGGTGAATCGTATATAACGAGCAGTGTAACCCACTCTT
GTCGTGAAGAAGGTATCGCTCACCTAGTTGCATATATTCGTTTGT
Right flanking sequence: Indices 627607 -- 628106
TAGCACATATTCATTCACTGCACGAAACCATTCACTGAAGCCAATCACAGAAGCCGTGTTCACTC
ACTGCACGAATCCATTCACTGCATGCCCCTAGCCCTACCCCACGAGCTAGTCAGCTCACTGTAGC
AACACGTCTATCCATTCTATCGTATGGCGCATGGGTATCCCCCCTCCCTCTCGGCGGGTATGTAG
TAACGATGGGGAACTAACTTCTCTCTGGGGTATGGATTGAACGTCTATATCCTTCACGTAGACTG
AACTGAACGTCTGTATTGACTGGATTGAACTGAATTGAATGGATTGAATGGATGAAACAGAACGT
GTATGCTTGAACTCCTATCTATCCATTGGTTCACATCTCTCTTGTCAGTTGGAACTTTGTCATGC
ATAGGTGTATCAGTAGTTAGGGTAATCGGTGCACCACCTCACACTTCATCTTCATCTCTCTATCC
GTGCACTTCACTCACTCTCTGGTATGAACTGAATGGGGTAATGAT
Found at i:627912 original size:9 final size:9
Alignment explanation
Indices: 627881--627919 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
627871 GAACGTCTGT
*
627881 ATTGACTGG
1 ATTGAATGG
*
627890 ATTGAACTGA
1 ATTGAA-TGG
627900 ATTGAATGG
1 ATTGAATGG
627909 ATTGAATGG
1 ATTGAATGG
627918 AT
1 AT
627920 GAAACAGAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (9 bp):
ATTGAATGG
Left flanking sequence: Indices 627381 -- 627880
CTCATGTGGGCCCTCAATCAATAACTCTCTGGCATAACCCACTTCCCTGACTGTCCTCTACCTGA
CTAGCACAATGTTTGTTTATGGCGCATGATCCTCCTCAACAGGTGAATCGTATATAACGAGCAGT
GTAACCCACTCTTGTCGTGAAGAAGGTATCGCTCACCTAGTTGCATATATTCGTTTGTGGCACCT
CATTGGGGCACCTCATTGGGGCACCTCATTGTAGCACATATTCATTCACTGCACGAAACCATTCA
CTGAAGCCAATCACAGAAGCCGTGTTCACTCACTGCACGAATCCATTCACTGCATGCCCCTAGCC
CTACCCCACGAGCTAGTCAGCTCACTGTAGCAACACGTCTATCCATTCTATCGTATGGCGCATGG
GTATCCCCCCTCCCTCTCGGCGGGTATGTAGTAACGATGGGGAACTAACTTCTCTCTGGGGTATG
GATTGAACGTCTATATCCTTCACGTAGACTGAACTGAACGTCTGT
Right flanking sequence: Indices 627920 -- 628419
GAAACAGAACGTGTATGCTTGAACTCCTATCTATCCATTGGTTCACATCTCTCTTGTCAGTTGGA
ACTTTGTCATGCATAGGTGTATCAGTAGTTAGGGTAATCGGTGCACCACCTCACACTTCATCTTC
ATCTCTCTATCCGTGCACTTCACTCACTCTCTGGTATGAACTGAATGGGGTAATGATTGAACTCC
TATGTCCTGTATGGCAATTCGAGGTAGAGTTAGTATCGTATCGGTATAGAGGTTAGAGTTAGAGT
GTAGATCGTTCGAGTATAGAGATAGAGGTAGTTCGTGTAGTTCGTAGAGTTCGATGTGAGGTGCA
CCAAACACAAAACTTCTCCATGCATCATGACAAGCAACACAATCTGATGAAGTTTAGTTGGATGG
ATGTGTCCCAAAGGTTGTGTCCAATTCCATTAGAAGAAATGAAACAGACTTCTTATCGCTTTCAA
AACCACATTAGTGCACTATCGTTTTGTTCTAATTAGTGTGCAACA
Found at i:630429 original size:24 final size:25
Alignment explanation
Indices: 630363--630434 Score: 92
Period size: 24 Copynumber: 2.9 Consensus size: 25
630353 TCAATTTCAA
* *
630363 CTTTAGTTGCTCGACCATAAGGTGC
1 CTTTAGGTGCTCGACCATAAGGTAC
* *
630388 CGTTAGGCCGCTCGACCATAAGG-AC
1 CTTTAGG-TGCTCGACCATAAGGTAC
630413 CTTTAGGTGCTCGACCATAAGG
1 CTTTAGGTGCTCGACCATAAGG
630435 GAGAGGGAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 14 0.35
25 12 0.30
26 14 0.35
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.25
Consensus pattern (25 bp):
CTTTAGGTGCTCGACCATAAGGTAC
Left flanking sequence: Indices 629863 -- 630362
ACATACTTCAACCCCGACGATCGTGAATCATGCTCCTCCTCCAACTTGATAAACATAAGCTCCTG
GTGGTTAGGGTATTTGCTATTGATTGGTTTAGGCCTATTGGTGAATGAAAGTAGGTGGTCCCGTG
TTCTCCGCCGACGAGTAAGAATCCAATCTTGAAACTTTAGTTGCTCTCAATCTAAGGATGCGTAA
GCAGGCTCGACTGATAAGGAGAGGACCTTTAGGTGCTCGACCATAAGGGAGAGGAGAGGAGGCGT
AAGCAGGCTCTCAATCTAACCCCCCCCACCCAATAAGTCAATTTCAACTTTAGTTGCTCGACCAC
CGCCTTTTAGTTACTTATTTGAGAGGGGCACCCAATAAGTAAACCCTAACCGGAGGGGCTCGACC
ATAAGCCCCCCCACCCAATAAGTAAACCCTAATGCGGGCAGGCTCGACTGATAAGGAGAGGACCG
GAGGGGCTCTCAATCTAGCCCCCCCACCCAATAAGTCAATTTCAA
Right flanking sequence: Indices 630435 -- 630934
GAGAGGGAGAGGGAGAGGACCGGAGGGGCTCTCAATCTAGCCCCCCCCACCCAATAAGTAAATTG
AAACGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTTAGTGACTCGACCCCCGCTAGTTACTT
ATTTGAGAGGGGCACCCAATAAGTCAAATTGAAACGTAGTCGCTTGTCCGCACCTCTTCCTAATG
GGAAGGCAAGCTTACGCAACTATTCCCCTAGCTACGGAGATGGGAGATTGGAGATGGGAGACCAG
AGAGCGGGTGGTAGGTCGATCAGTCAATGATTCCTTCCCCGATCTGATGGGACTAGGCTCTGTCC
TTCCCCGATCTGGTGGTACGACTGGTGGTACGAATGGGTATTTCCTTCCTCGATCTGATGGTACG
ATCAAGAAAATCCTTGCACTAGGAAGCGCAAGACCCTCCGGACCTTCCTTCCCTTACCTTAGAGT
GGGTAGGGCTAGACTTTCCAACAGCGGCACCAACGCAGTACATTG
Found at i:631469 original size:31 final size:31
Alignment explanation
Indices: 631433--631507 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
631423 ATCCAACCTT
631433 AGCAGCAATAGTAGCAGCAATAACCTTCCAC
1 AGCAGCAATAGTAGCAGCAATAACCTTCCAC
*
631464 AGCAGCAATAGTAGCAGCAATAACCTTCCGC
1 AGCAGCAATAGTAGCAGCAATAACCTTCCAC
631495 AGCAGCAATAGTA
1 AGCAGCAATAGTA
631508 AGTACCGCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.39, C:0.27, G:0.19, T:0.16
Consensus pattern (31 bp):
AGCAGCAATAGTAGCAGCAATAACCTTCCAC
Left flanking sequence: Indices 630933 -- 631432
TGACTCACAAACCAATCACCAATTTCTTCTCTACTACCAGGCATTCATCATCCTTGGATGCTAGG
AGAGCTTCCACCCTAGCTTCCACTTCATCTCTAGTTTTGTCTCTGTCCTTAGTGGGCAAATTCAA
AGGCTACCACGGATCACTCCCCAGGGGACCATCAGTCTAGGCCATTCTCAAGGAGACATTGGGAG
ACAGGCTCTTAGGGTGGACATTGCCATTCCTAGCTCCAAGGAAAAGGCTGAAGTGGACTATAGGC
TAGTACATTGTGCATTTGGACTTAGCTGCCATGCCAGGGTGTTCCTTTTTGAGAATCATGCATTC
GCTGGATTGGTATTGAGCCTTTGCTCCTTTCTTTTCTACCTCGGTTTCATCCCCTTTGGGGGTTG
GCCTCTTCGTGGGTCGACTGTAGGCTAGTACATTGTGCATTCGGAATTAGCCGCCATGCCGCGTG
TAACCTTTTGAGAGTCGCGTGTTGGTTTGTTTGGTATCCAACCTT
Right flanking sequence: Indices 631508 -- 632007
AGTACCGCTATACTGCACGAGGAGAAGACCGATATGCATACCGATATGAAGCATGTACCGATATA
ATGAGGAGAAGACCGCTACGGGCTTAAGACTACACTGCTTGGTCTAACCCGTATTTCCCGGTATT
TCTCGAACTATTTTCTTCATGAGTCAATGTACCTATTTAACAGATTGGAACTTCGGATAAGAAGG
AGATCATAATGGCTCATCATAAGACAGGCTCATCATAAGACAGGCTCATCATACCATGTTAGTTT
GGTTCACTCTGCACCTCACGTTCTCACTGCCAGGCTGGTTATCACGCGTTCTCACGAGAGCCTTT
GTAGGGCTTCACTTTCAACTATTTCCTCAACTCATTTAGGGAAGGATACAGATCTACTACTGATA
GGGAAGGAGACAACAACAGCTGAAGACAGACCACTTCATATAGTTAATGTAGCCCCCACGTTTTC
CGCATTTATGTGGTTTACGACCACTACCTTTGTTCTCTTGAATCT
Found at i:631734 original size:16 final size:16
Alignment explanation
Indices: 631713--631755 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
631703 AGATCATAAT
631713 GGCTCATCATAAGACA
1 GGCTCATCATAAGACA
631729 GGCTCATCATAAGACA
1 GGCTCATCATAAGACA
631745 GGCTCATCATA
1 GGCTCATCATA
631756 CCATGTTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (16 bp):
GGCTCATCATAAGACA
Left flanking sequence: Indices 631213 -- 631712
CTTAGCTGCCATGCCAGGGTGTTCCTTTTTGAGAATCATGCATTCGCTGGATTGGTATTGAGCCT
TTGCTCCTTTCTTTTCTACCTCGGTTTCATCCCCTTTGGGGGTTGGCCTCTTCGTGGGTCGACTG
TAGGCTAGTACATTGTGCATTCGGAATTAGCCGCCATGCCGCGTGTAACCTTTTGAGAGTCGCGT
GTTGGTTTGTTTGGTATCCAACCTTAGCAGCAATAGTAGCAGCAATAACCTTCCACAGCAGCAAT
AGTAGCAGCAATAACCTTCCGCAGCAGCAATAGTAAGTACCGCTATACTGCACGAGGAGAAGACC
GATATGCATACCGATATGAAGCATGTACCGATATAATGAGGAGAAGACCGCTACGGGCTTAAGAC
TACACTGCTTGGTCTAACCCGTATTTCCCGGTATTTCTCGAACTATTTTCTTCATGAGTCAATGT
ACCTATTTAACAGATTGGAACTTCGGATAAGAAGGAGATCATAAT
Right flanking sequence: Indices 631756 -- 632255
CCATGTTAGTTTGGTTCACTCTGCACCTCACGTTCTCACTGCCAGGCTGGTTATCACGCGTTCTC
ACGAGAGCCTTTGTAGGGCTTCACTTTCAACTATTTCCTCAACTCATTTAGGGAAGGATACAGAT
CTACTACTGATAGGGAAGGAGACAACAACAGCTGAAGACAGACCACTTCATATAGTTAATGTAGC
CCCCACGTTTTCCGCATTTATGTGGTTTACGACCACTACCTTTGTTCTCTTGAATCTTGGGCTGT
GGCCGGCCGGGAGAATGTCTGCGTTAATAGTTCGTGTGGGGAGGCTGCACCAAAAAAAACTAGCT
TATAGGGTAGTGGGGGTACAACCTTTGCATGAACTGGGCTTAGGTAGTGGCTTGGGTTAGGTGCT
GTTGGTAAGATGTCTACCTCAATAGCTGCTCTATGCGTTTGAATCTCGATTCATTAAATGATCAA
TTTGCTTCATTTGGTAAATACCGGCGCTCATACACTTTGACGGCA
Found at i:633375 original size:19 final size:19
Alignment explanation
Indices: 633351--633389 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
633341 CGCATCAGAT
633351 AAGAAACGATAAGATGCGG
1 AAGAAACGATAAGATGCGG
633370 AAGAAACGATAAGATGCGG
1 AAGAAACGATAAGATGCGG
633389 A
1 A
633390 TAAGAAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.31, T:0.10
Consensus pattern (19 bp):
AAGAAACGATAAGATGCGG
Left flanking sequence: Indices 632851 -- 633350
TGTTTCTATGGACCAAGAAGACTAGAGCTAGTGTCCATAATAGGGCTCCAGGCGGGACTAACTGC
TTGGACTAAGCTAGAGTATATCTGAAGGCAGCTTGTTTCTCTGTTGCTTGGACCAAGAATATGAA
AGCTCTAGTGTTGTCCAAAGGGCTTACTCTGTACAGACTAAGGCTTTGTCTCTTAAGGCTTGTAG
TAGCGTTCAGTAAAGCTGTAATAAGGCTGTGCCCTTCGGGAACGATTGCTAAAAGGCTGTAACGT
TCGGTCTTCCTATCCTTCCTCTCGTGTAGTGGGCGAGAGGTTGTTCTAGTCTCGTGGGGTTGTTC
GAGTGTGTTCTATCAATTAATACGGGGCGAGCTGGGTAGCACTGCAACTTCTTCCTCTGCAAATT
ACCTTATGCGGATATGCGGAAAAGACATGCGCATATGCGGATATGCGGGACTTTCCCTCTGCAAA
TGAACTTAATCCGCATATGCGGAACAGCTATTTGCCGCATCAGAT
Right flanking sequence: Indices 633390 -- 633889
TAAGAAGTCAAAGATGCGGATAAGATAGGATAAGAAGGATAAGCAAGGAAGCACCCCAACCTTTC
AGGGGTTCATTCCTCAGGGGCACGGTAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGATATT
GATTATTTACAGATGCGATTGCTATCAGTTTACTGCCTCCGTATGGGTTAACTGCCTCTATCATT
CGTATCGGTTCACTGACTCACTTTAGAAAGTCACGCTGGTCTGGCTCCTCTTTCTCGCGAGGAGA
GGTTATAACTGTCTTAACTAGACCCCACGGAGCTACTTTCTTTCTTTTATTAGATATTCTCTTTC
CTTGATGCTTATTGGGTGGTGGGCATATGAATGAGTGAGCAATCCTTTCAATTTACTTATTGGGT
GGGGGGGCTTATGGTCGAGCGGCCTTACGGCACCTTATGGCTCCCTCGTGAAGCAAAGCATTCAC
TTGTGAAGCAAAGCATTCATTCGTTAGCAGCAAAGTAACACTCGT
Found at i:634122 original size:17 final size:17
Alignment explanation
Indices: 634100--634133 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
634090 GGAATCCCCT
634100 ACTATCTATATAACGCA
1 ACTATCTATATAACGCA
634117 ACTATCTATATAACGCA
1 ACTATCTATATAACGCA
634134 TATGTAACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
ACTATCTATATAACGCA
Left flanking sequence: Indices 633600 -- 634099
ACTCACTTTAGAAAGTCACGCTGGTCTGGCTCCTCTTTCTCGCGAGGAGAGGTTATAACTGTCTT
AACTAGACCCCACGGAGCTACTTTCTTTCTTTTATTAGATATTCTCTTTCCTTGATGCTTATTGG
GTGGTGGGCATATGAATGAGTGAGCAATCCTTTCAATTTACTTATTGGGTGGGGGGGCTTATGGT
CGAGCGGCCTTACGGCACCTTATGGCTCCCTCGTGAAGCAAAGCATTCACTTGTGAAGCAAAGCA
TTCATTCGTTAGCAGCAAAGTAACACTCGTTGGAAACACTTCCTTCATTGGCAGTAATCAGCACT
CTTACTTCAGTGAGAACTAGTGAAGATGATACTACTGCTCTTATTGGTCCTCCTTCTGCTGCTTA
CGGGTATCTATGGTATGCATCTTGGTCACCAAGGAAGGTATCCATATGGGTATAGATCTGCGACG
GGTTAATATGGCAACACCTTGAACCTTATTGATAAGGAATCCCCT
Right flanking sequence: Indices 634134 -- 634633
TATGTAACTGAGCCAAGGAAGCAAGCTAGGACGGGATAAGCTAGAAGGAAGGAAGCTACCACTAG
TGGGTATGCATCCACCGCACAGATTATGGGACTGATACAGGAGTGGCACCTGGGTATGCGACTCG
ATCTGCTGATGTTAGTGGTGCTAGTACTGGATCTGCTACTGAGAATGCCCTTGCATCTTGGTCAT
TATGCTCTATATAATATGCTGCTTCTATAGCTACTGGTGCCTTTGCTCGGTCAATGAGGTCAACT
TCTGACTGGATCATCGGCTGCTAAGGCTGGCGGAACTGGATCTACTCTTTTTTCTGCTTACTAGG
ACTATACTACTAATGTTGTTAGTAGTAGTGTTGCTGGCTATGGCTCTATTATAATGTGACTGGGT
CAACTGCTTGCCTCTGCTACTATAGCTTACTCCGCTGTGTGCTTTGCCACCTTAGATACTACCTT
CGCCTCTGCAATGAAATCCGCTCGATCTTCTACTGGGTTTCACTT
Found at i:638371 original size:14 final size:14
Alignment explanation
Indices: 638352--638379 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
638342 CGAGAACCAA
638352 TCTGTTGGGGATAG
1 TCTGTTGGGGATAG
638366 TCTGTTGGGGATAG
1 TCTGTTGGGGATAG
638380 AAGGTTGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.43, T:0.36
Consensus pattern (14 bp):
TCTGTTGGGGATAG
Left flanking sequence: Indices 637852 -- 638351
ATCAGGATCTCGGCCACAAACACCATAATCTCGCTTACGAGCATCAGACTCGCAAACATCAGGCT
CTTCGGCTCAAGCAAGCATCCGACTATTTCTTCCGATCACTAAACTTAGGCTCTTCCTTGCCCTA
GGAAGCGCAAGCCCCTCCGGGTCCTTGCCTTCCTATTTCTTCTCTGGCGGCTTCGCACCTTTCGA
TCTGGAACTGATAGCTATGGCTCATCAACTTGATCAACTGGATCATTTACTTATGAAAGGTGAAC
TGGCTCTACCGATCCCGTAGCTTTCAAGGAAGGCTTCCCTGAGCGAATCAGAGTAGGTAAAGAGG
GAGCAAGAAGGGAAGCATGGGCGCTGCTTCTTTTTCAGGGAACAAGAACTACAAAAGGCCTAAGC
TGGTCAGGGTGAGTGGGGAGCCTGCATGAGGTGCCCCCGAGGATGCTCATGCATTCAAGGAGAAA
GGATAGAGATAAGGATAGATAGGATAGCCCGCCCACGAGAACCAA
Right flanking sequence: Indices 638380 -- 638879
AAGGTTGGGTAGGGCAGGAAAGTCAAGAATTATGTTGGGGTGATTGAAAGGCTATAAGAAAAGGT
TGGGGATAGTAGAGGGCTGATGAAAGAAATAGGAATGGTGGATAGTATTCTTTTTCGGGGGAATG
TTTCTCTTCGGGGGAAGAAAGAAAGTGGTTGTGGGGGATGGTGGGTGCGGGGAAAGGCTGTTGGG
AAAGGCTGTTGGGAAAGGCTGTTGGGGATAGAAGGATATTCTCTGTGAATGGAAGGAAGGCGAAG
CCGATACCTCCATTCATAAAGTGACCCATTCTATAGGACAGACTCGCTACGCTCTGCAACTATGG
GTAGAAGGCGGATGGTGGGTGTCGGGAAAGCTAGCGTGCGTTCTCGAAGGTGTGATAGTAGTTGT
TGGGCATGAAAGGAAGAAGATCCGAGAAGATCCGAGAAGATCAGGAGGAAGATATAGTCAGTTAT
GAGCCCGTAGTCAGAGGTATTATGAGCCAGTAGTATGAACCGGTA
Found at i:638577 original size:13 final size:13
Alignment explanation
Indices: 638559--638600 Score: 84
Period size: 13 Copynumber: 3.2 Consensus size: 13
638549 GGTGGGTGCG
638559 GGGAAAGGCTGTT
1 GGGAAAGGCTGTT
638572 GGGAAAGGCTGTT
1 GGGAAAGGCTGTT
638585 GGGAAAGGCTGTT
1 GGGAAAGGCTGTT
638598 GGG
1 GGG
638601 GATAGAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.50, T:0.21
Consensus pattern (13 bp):
GGGAAAGGCTGTT
Left flanking sequence: Indices 638059 -- 638558
AGCTATGGCTCATCAACTTGATCAACTGGATCATTTACTTATGAAAGGTGAACTGGCTCTACCGA
TCCCGTAGCTTTCAAGGAAGGCTTCCCTGAGCGAATCAGAGTAGGTAAAGAGGGAGCAAGAAGGG
AAGCATGGGCGCTGCTTCTTTTTCAGGGAACAAGAACTACAAAAGGCCTAAGCTGGTCAGGGTGA
GTGGGGAGCCTGCATGAGGTGCCCCCGAGGATGCTCATGCATTCAAGGAGAAAGGATAGAGATAA
GGATAGATAGGATAGCCCGCCCACGAGAACCAATCTGTTGGGGATAGTCTGTTGGGGATAGAAGG
TTGGGTAGGGCAGGAAAGTCAAGAATTATGTTGGGGTGATTGAAAGGCTATAAGAAAAGGTTGGG
GATAGTAGAGGGCTGATGAAAGAAATAGGAATGGTGGATAGTATTCTTTTTCGGGGGAATGTTTC
TCTTCGGGGGAAGAAAGAAAGTGGTTGTGGGGGATGGTGGGTGCG
Right flanking sequence: Indices 638601 -- 639100
GATAGAAGGATATTCTCTGTGAATGGAAGGAAGGCGAAGCCGATACCTCCATTCATAAAGTGACC
CATTCTATAGGACAGACTCGCTACGCTCTGCAACTATGGGTAGAAGGCGGATGGTGGGTGTCGGG
AAAGCTAGCGTGCGTTCTCGAAGGTGTGATAGTAGTTGTTGGGCATGAAAGGAAGAAGATCCGAG
AAGATCCGAGAAGATCAGGAGGAAGATATAGTCAGTTATGAGCCCGTAGTCAGAGGTATTATGAG
CCAGTAGTATGAACCGGTATTATGAGCGAGTATCCTGAGCCTGTATCCTGTATTAGGAGCCCGTA
GTAAGAGCCTGTATTATGAGGTATTATGAGCCGGTATTTATGAGGTAAGGTTCAATTTACTTATT
GGGCTCTCAAATAAGTAACTAAAAGGCGGTGGTCGAGCCTGCTTGCGCATCCTGAAAGTGCTTAT
CTGCCTGAGCTCAGGTAAGTAGTTCCCTTTCACCGGCACAGGACG
Found at i:638799 original size:10 final size:10
Alignment explanation
Indices: 638784--638811 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
638774 CATGAAAGGA
638784 AGAAGATCCG
1 AGAAGATCCG
638794 AGAAGATCCG
1 AGAAGATCCG
638804 AGAAGATC
1 AGAAGATC
638812 AGGAGGAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.18, G:0.29, T:0.11
Consensus pattern (10 bp):
AGAAGATCCG
Left flanking sequence: Indices 638284 -- 638783
ATGCTCATGCATTCAAGGAGAAAGGATAGAGATAAGGATAGATAGGATAGCCCGCCCACGAGAAC
CAATCTGTTGGGGATAGTCTGTTGGGGATAGAAGGTTGGGTAGGGCAGGAAAGTCAAGAATTATG
TTGGGGTGATTGAAAGGCTATAAGAAAAGGTTGGGGATAGTAGAGGGCTGATGAAAGAAATAGGA
ATGGTGGATAGTATTCTTTTTCGGGGGAATGTTTCTCTTCGGGGGAAGAAAGAAAGTGGTTGTGG
GGGATGGTGGGTGCGGGGAAAGGCTGTTGGGAAAGGCTGTTGGGAAAGGCTGTTGGGGATAGAAG
GATATTCTCTGTGAATGGAAGGAAGGCGAAGCCGATACCTCCATTCATAAAGTGACCCATTCTAT
AGGACAGACTCGCTACGCTCTGCAACTATGGGTAGAAGGCGGATGGTGGGTGTCGGGAAAGCTAG
CGTGCGTTCTCGAAGGTGTGATAGTAGTTGTTGGGCATGAAAGGA
Right flanking sequence: Indices 638812 -- 639311
AGGAGGAAGATATAGTCAGTTATGAGCCCGTAGTCAGAGGTATTATGAGCCAGTAGTATGAACCG
GTATTATGAGCGAGTATCCTGAGCCTGTATCCTGTATTAGGAGCCCGTAGTAAGAGCCTGTATTA
TGAGGTATTATGAGCCGGTATTTATGAGGTAAGGTTCAATTTACTTATTGGGCTCTCAAATAAGT
AACTAAAAGGCGGTGGTCGAGCCTGCTTGCGCATCCTGAAAGTGCTTATCTGCCTGAGCTCAGGT
AAGTAGTTCCCTTTCACCGGCACAGGACGAAAGGTAAGGTCCGGAGGGTCTTGCGCTTCCGAGTG
CAAGGAGAACCCATATTTCTTCCCCTCAATCCTTACGAAGGTAAGTGAAGTGATCACCCTTCGCT
ACGCTCACTCCGGTAAGTGAGAACCTGATCTTCGACAATGCATATATTATATATGTAATTACGCT
TTCTTATAGGCGTACTTCCTTGATGCTTATTGGGTGGGGGGCGTT
Done.