123.fas.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Length:  1191054

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 912 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503056--503155	27	3.8	27	70	4	87	23	33	20	24	1.97
504214--504248	18	1.9	18	88	0	52	25	22	28	22	1.99
504307--504362	29	1.9	29	85	0	76	28	26	14	30	1.95
504489--504547	26	2.1	27	84	9	75	38	27	27	6	1.81
506004--506035	14	2.3	14	94	0	55	25	28	21	25	1.99
506028--506059	15	2.1	15	100	0	64	34	18	21	25	1.96
507024--507075	18	2.9	18	85	2	70	42	11	28	17	1.84
509147--509186	20	2.0	20	100	0	80	20	20	25	35	1.96
511465--511502	19	2.1	19	85	14	53	44	7	21	26	1.79
512661--512757	45	2.2	45	79	3	106	30	22	14	31	1.94
513031--513144	36	3.2	36	64	14	101	29	27	23	19	1.98
512989--513160	70	2.5	70	99	0	335	29	31	20	18	1.97
513000--513108	34	3.1	34	62	14	87	30	33	17	18	1.94
513745--513824	26	3.2	26	69	7	83	23	16	41	18	1.90
513744--513816	24	3.0	24	69	4	65	21	16	42	19	1.89
517017--517051	17	1.9	19	88	11	56	42	14	17	25	1.86
518749--518779	15	2.1	15	93	0	53	6	35	32	25	1.82
519255--519308	13	4.2	13	73	0	54	38	38	18	3	1.69
520425--520451	14	1.9	14	100	0	54	29	18	29	22	1.97
520485--520515	16	1.9	16	93	0	53	25	12	22	38	1.90
520965--521020	27	2.1	27	100	0	112	53	10	14	21	1.70
530799--530977	33	5.4	33	100	0	358	12	34	16	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532839--532918	30	2.7	30	92	3	126	28	15	31	25	1.95
532951--533021	23	3.0	24	91	4	126	21	25	25	28	1.99
533219--533244	11	2.4	11	100	0	52	38	0	61	0	0.96
533190--533281	49	1.9	47	86	6	132	26	13	45	15	1.82
533876--533901	10	2.6	10	100	0	52	53	7	19	19	1.68
534377--534410	8	4.2	8	100	0	68	35	0	52	11	1.38
534417--534492	21	3.4	21	75	16	73	21	5	42	31	1.75
534720--534782	20	3.2	20	100	0	126	14	46	4	34	1.66
537396--537445	26	1.9	26	100	0	100	30	26	20	24	1.98
537452--537510	27	2.2	27	100	0	118	10	50	10	28	1.68
537462--537532	27	2.6	27	84	0	79	16	38	16	28	1.91
538899--538973	23	3.1	23	76	7	60	20	36	16	28	1.93
538891--539051	27	6.1	27	74	9	107	18	37	15	27	1.91
539494--539550	25	2.4	24	82	5	71	22	38	17	21	1.93
539544--539600	19	3.0	19	94	0	96	19	31	22	26	1.98
539899--539934	13	2.6	14	86	4	56	19	30	22	27	1.98
541583--541823	121	2.0	121	100	0	482	16	19	34	29	1.94
546621--546670	26	1.9	26	100	0	100	30	26	20	24	1.98
546677--546735	27	2.2	27	100	0	118	10	50	10	28	1.68
546687--546757	27	2.6	27	84	0	79	16	38	16	28	1.91
547095--547211	35	3.6	35	68	17	124	29	14	35	19	1.92
547054--547206	62	2.5	62	100	0	306	28	15	34	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547214--547247	17	2.0	17	100	0	68	17	5	52	23	1.66
550873--551029	40	4.1	40	69	20	152	19	24	37	19	1.94
550914--550941	9	3.1	9	100	0	56	10	25	53	10	1.67
551098--551184	32	2.8	30	68	13	77	16	40	24	19	1.91
551279--551331	24	2.2	24	86	0	70	20	32	22	24	1.98
552082--552133	20	2.5	20	96	3	95	3	50	19	26	1.65
552122--552179	27	2.1	27	100	0	116	10	50	10	29	1.70
552131--552201	27	2.6	27	84	0	79	16	38	16	28	1.91
552487--552622	66	2.1	66	100	0	272	20	33	17	27	1.95
556164--556303	33	4.2	33	100	0	280	17	35	14	33	1.90
557748--557786	15	2.6	15	100	0	78	12	17	30	38	1.88
558184--558259	25	3.0	25	98	0	143	23	19	27	28	1.98
558501--558558	27	2.1	27	100	0	80	29	10	50	10	1.70
558547--558597	20	2.5	20	100	0	102	27	19	49	3	1.66
562137--562181	20	2.2	20	88	0	63	33	13	28	24	1.93
562414--562457	23	1.9	23	95	0	79	9	18	40	31	1.81
562414--562467	23	2.7	18	75	24	63	9	16	42	31	1.80
565315--565349	18	1.9	18	100	0	70	40	17	17	25	1.90
578596--578645	26	1.9	26	100	0	100	24	20	26	30	1.98
580700--580849	38	3.7	38	72	20	149	31	16	18	33	1.94
580670--580842	87	2.0	87	100	0	346	33	15	19	31	1.93
580820--581032	107	2.0	107	100	0	426	34	16	24	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582199--582233	18	1.9	18	88	0	52	25	5	40	28	1.78
584775--584839	33	2.0	33	93	0	112	26	27	24	21	1.99
585173--585203	14	2.2	14	100	0	62	35	16	35	12	1.87
585208--585248	18	2.3	18	86	0	55	31	19	26	21	1.97
585818--585926	42	2.6	42	94	0	182	23	18	29	28	1.98
586511--586566	27	2.2	25	87	6	76	25	32	19	23	1.98
590132--590160	4	7.2	4	100	0	58	48	0	27	24	1.51
590384--590413	5	6.0	5	92	0	51	23	0	36	40	1.55
597088--597171	27	3.1	27	93	1	134	26	22	34	16	1.95
597155--597252	27	3.6	27	91	0	142	24	23	35	16	1.95
597308--597429	65	1.9	65	85	0	172	25	25	30	18	1.98
597400--597457	27	2.1	27	96	0	107	22	20	34	22	1.97
597528--597681	49	3.0	51	84	5	231	16	25	25	32	1.96
597524--597678	52	3.0	52	84	5	244	16	25	25	32	1.96
598489--598535	24	2.0	24	84	12	62	19	25	27	27	1.99
599397--599515	33	3.6	33	100	0	238	26	22	26	24	2.00
602665--602700	18	2.0	18	100	0	72	38	5	38	16	1.72
602841--602870	10	3.1	10	90	9	53	30	0	40	30	1.57
603200--603225	13	2.0	13	100	0	52	53	0	30	15	1.42
603957--603993	18	2.1	18	100	0	74	21	40	5	32	1.76
604154--604179	13	2.0	13	100	0	52	15	30	7	46	1.74
606021--606092	22	3.7	19	77	12	74	12	33	23	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606670--606706	18	2.1	18	100	0	74	32	40	10	16	1.83
608043--608109	25	2.7	25	90	2	109	19	25	25	29	1.98
609514--609669	78	2.0	78	91	0	249	16	35	28	19	1.93
614058--614133	38	2.0	38	100	0	152	31	34	15	18	1.92
613971--614221	126	2.0	126	100	0	502	28	32	17	21	1.96
614096--614257	88	1.8	88	100	0	324	27	30	18	22	1.97
614365--614557	65	2.9	65	94	2	323	33	12	17	36	1.87
615293--615318	12	2.2	12	100	0	52	15	46	15	23	1.83
615904--615930	14	1.9	14	100	0	54	22	37	18	22	1.95
618832--618883	24	2.2	24	96	0	95	21	26	23	28	1.99
620160--620205	18	2.6	18	82	0	56	26	28	13	32	1.93
620288--620338	18	2.8	18	90	0	84	27	23	17	31	1.97
620507--620542	17	2.1	17	94	0	63	16	41	5	36	1.72
622116--622174	27	2.3	26	88	5	84	25	30	23	20	1.98
622204--622254	23	2.1	25	89	7	79	21	31	25	21	1.98
622351--622418	27	2.6	26	88	6	111	26	29	23	20	1.99
622515--622588	24	3.1	24	94	3	132	25	27	24	22	2.00
622569--622753	89	2.1	89	95	0	334	21	34	19	25	1.96
622684--622754	27	2.6	27	86	0	88	19	33	19	26	1.96
624988--625020	16	2.1	16	94	0	57	6	18	42	33	1.75
626392--626425	15	2.3	15	94	0	59	17	14	23	44	1.86
627070--627120	17	3.0	17	88	0	75	25	27	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627569--627606	13	2.9	13	100	0	76	15	31	28	23	1.96
627881--627919	9	4.2	9	83	6	51	33	5	28	33	1.79
630363--630434	24	2.9	25	81	6	92	22	26	26	25	2.00
631433--631507	31	2.4	31	97	0	141	38	26	18	16	1.91
631713--631755	16	2.7	16	100	0	86	34	25	18	20	1.96
633351--633389	19	2.1	19	100	0	78	48	10	30	10	1.70
634100--634133	17	2.0	17	100	0	68	41	23	5	29	1.78
638352--638379	14	2.0	14	100	0	56	14	7	42	35	1.73
638559--638600	13	3.2	13	100	0	84	21	7	50	21	1.72
638784--638811	10	2.8	10	100	0	56	42	17	28	10	1.83

Tables:   1   2   3   4   5   6   7   8