Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039746
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1191054
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 2 characters in sequence are not A, C, G, or T
File 2 of 8
Found at i:130053 original size:117 final size:117
Alignment explanation
Indices: 129915--130150 Score: 472
Period size: 117 Copynumber: 2.0 Consensus size: 117
129905 CAATAAGTAA
129915 ACCCTAACCGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTGAGTTGCTCGACCAACCTAAGG
1 ACCCTAACCGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTGAGTTGCTCGACCAACCTAAGG
129980 AAGGATGAATGTTTTACCATGCTACCAACCACCTGGACACCCACTTTGATAG
66 AAGGATGAATGTTTTACCATGCTACCAACCACCTGGACACCCACTTTGATAG
130032 ACCCTAACCGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTGAGTTGCTCGACCAACCTAAGG
1 ACCCTAACCGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTGAGTTGCTCGACCAACCTAAGG
130097 AAGGATGAATGTTTTACCATGCTACCAACCACCTGGACACCCACTTTGATAG
66 AAGGATGAATGTTTTACCATGCTACCAACCACCTGGACACCCACTTTGATAG
130149 AC
1 AC
130151 GACCGGCTGA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 119 1.00
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (117 bp):
ACCCTAACCGGCAACGGGGCTCTCAATCTAAGGAGAGGAACTTGAGTTGCTCGACCAACCTAAGG
AAGGATGAATGTTTTACCATGCTACCAACCACCTGGACACCCACTTTGATAG
Left flanking sequence: Indices 129415 -- 129914
CTAAACAAGACACTTCGCGTTTCCACCCTCGCCCTCTTAATGACTTATTGGTTAGTGGGGGTATT
TAGAGCGGCTCGTTTGCTCCTCGCCCCTATTAGGACGTCCCTGGGGATCGTGCTGCTGGTCATGA
ATTATATACGTAATTACGCTTTAGCGAACAATGTTGGGCATATGTCATTATGCATTTCTGATTCT
TTTCTTCGACAATGCTGCTATGGGCATATGTCATTACTTACGCTTTAGGCTCTCATAATCGATCC
ATACCTAATATCGTATACAAAGAGATATCTCATTATATATGTCATTATGCTTTTTCACTTTTCTT
CCAGTCATGATGCGCAAGCAGGCTCGACCATAAGCCCACCACCCAATAAGCATCAAGGACCGGCA
ACGGGGCTCGACTGATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGAACTTGAG
TTGCTCGACTGTTAGGGTTTACTTATTGCCCCACCCAATAAGTAA
Right flanking sequence: Indices 130151 -- 130650
GACCGGCTGATCTGAACTTAGATATTGCAGGCTTGCTTAGTTAGTGGGGTCCGTGGGCACAGCAT
TGCTACCTTTACTCGCATTACTTAAGTGTTACCACCAACCTAGATTTACGACTTACCCCACTTAG
GAATCCCCAAACTTACAGCGTTGGACGGACGGGGCTTCCCATAGAGCTAGCTTTTTGACCGCCTT
CCAGACAGCAGAGCATTCACAGGAATCACACTTGCTGAAAGGAAGGACAGATGGTGGTGCCACTA
TTCCTATTGTTCCGGCCGAGCCTTGCCCAGGATACGATTCAGAATTACCAACTGCTTGAGAGGAA
GAGCCCTACTTGTTGCACTTTTCTTTGACTCTAACAACCCACCTTTACTCACCTACCTGAGACTC
ACTTATCCTACCTCATACCCAACCTAGTGCTTCAGGTAGTTCAACAAGGTAAGCTACTGACTCTG
CCACTACTAGGTCACCTGGTCCGGAAGCTGCCTTAGCTGCAGTTT
Found at i:130912 original size:18 final size:18
Alignment explanation
Indices: 130869--130912 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
130859 CTATTATGTA
*
130869 GTTCCCCATCACTAGGTG
1 GTTCTCCATCACTAGGTG
* * *
130887 GCTATCCATCGCTAGGTG
1 GTTCTCCATCACTAGGTG
130905 GTTCTCCA
1 GTTCTCCA
130913 CGTGGTTCTC
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.32, G:0.23, T:0.30
Consensus pattern (18 bp):
GTTCTCCATCACTAGGTG
Left flanking sequence: Indices 130369 -- 130868
AATCACACTTGCTGAAAGGAAGGACAGATGGTGGTGCCACTATTCCTATTGTTCCGGCCGAGCCT
TGCCCAGGATACGATTCAGAATTACCAACTGCTTGAGAGGAAGAGCCCTACTTGTTGCACTTTTC
TTTGACTCTAACAACCCACCTTTACTCACCTACCTGAGACTCACTTATCCTACCTCATACCCAAC
CTAGTGCTTCAGGTAGTTCAACAAGGTAAGCTACTGACTCTGCCACTACTAGGTCACCTGGTCCG
GAAGCTGCCTTAGCTGCAGTTTCTACCGCCTCTATTGCCTTTGCCTCTCTCTGTCTCTGCTTTAG
GTGGTCCTAGAACTGGATATTCAATGCGTGAAAGGAAGGTCTAAGTGGAAATTTGATCTCCACCA
AATACCAAGCCCGATGCTAGTGAAAACCTAGGTGGTAGTTTCCCATATGTGGTGGCTCGTTCTCC
TTCATGTGGTAGTTCGCCGTTAGGAAGTTCTCTATCTATTATGTA
Right flanking sequence: Indices 130913 -- 131412
CGTGGTTCTCCTCTAGATGGAGGCAGTGTCAGTTGTTCTTATAGGCTAGTATGTGAATCTGGGGA
CAAGGTAGGCTTCTATCTGGGGGCAGATCCAAATGCATATCCCGTATGACCAGCTAGCTTAGGAT
CAAAGATGATGATTATTTGTGGAAAGTGGCCGGATGCTTAACCTTGACCACCGGAGATTTAGATG
CTCGACTGCTGAAAGAAGATGGAAAGCCGTATGAATGGTTCCCCTACCTCACCTGGCCGAAAACT
TGGAAAAGTTAGATCATTATAGCTAGATTTCCCTCTGCTCCCATCTCTTACAACACGGAATGACG
GAACATCGCTAGTAGGGTATTATATCGGAACAACTTGACTAGGAGCATCATAGGATGTTAGAAAA
CGCGCATATGCTGAAACATCTCTACTTAGAACATCTCCAATTGTCGGAACTAAGCTATTGTCGAA
ACATATGGAACTACTGGTTAGGGCACTCCAACTGGACCCGCCTCT
Found at i:136366 original size:18 final size:18
Alignment explanation
Indices: 136343--136377 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
136333 ATATGAATCA
136343 CGAGCATATGAATCTTAC
1 CGAGCATATGAATCTTAC
*
136361 CGAGCATCTGAATCTTA
1 CGAGCATATGAATCTTA
136378 ATATAGCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (18 bp):
CGAGCATATGAATCTTAC
Left flanking sequence: Indices 135843 -- 136342
ACCTCGCTAGACCAAGCACCTAAGTGAGGTATTTATGAACTGGGAAGGAATGAGAGGCTCGAAAG
AGGCAGGTAAGAGAGCAGGCTTAACCTAGCAATTCTCATACTCATACAGCAACTCTTCTCCATAC
TCATACCTCATCCTTGGGAAACTCCACTTACTCCTTGGGGACTTAACCTCAGCCAACCTCTTCAA
CCTTATTCTTTGAACCATCCTTACAATCTTCCTTCCTTCCTTGGGTACCTCATCCATACATACTT
TGGTGGGACTAGCCTTGTAACAACCTATGCCTCCATCTTTCCTTAACCTCTGCCAGGCAGCCTCT
GAACTAACCTATTATACCCTTTCCCTACCCTTACCCTTCAGAAATGCCTTTCTATAAGTAGGAGG
GGAATAATTGGTCACCCACACTCAGTAGCCTCTGTTCTGATATGGTACTTCAGCTCGTTCTCTAA
AATCATAATCTCGAGCTATTCTTAATTGGGTCCGAATATGAATCA
Right flanking sequence: Indices 136378 -- 136877
ATATAGCTTATCACCGTAGACCCCACCCGGATGATGAGAATTGCTATAGTAAGGCATGCAACCTT
AACGGGGACAACATGAATGGGAACATGAATTGGAAACAACCTGGTAGCGGAGCTACTGGTTCTCG
TAATGAAAGGGATAGGAGGCAAATAAATGCGTAGCGAGCGGCAGACAAGACAGGTAATGTAGGCC
GGTCGGCTTATCCTTGCACTCGGAAGCGCAAGACCCTCCGGACCTTCTTTTTTTCGATCCAGAAT
TTGAAGTTCTTAATTCCACTAACATATCGCGCCTTTTACTTAATATAATGATTGTGGTAAATAAG
AAGTTGCTGCCGATTCCAGTCACTTATATATAGCATTCCACTTATATGTCGCGACTACAACATAA
TCGTTCAAGTATTATAATATCAAAGCAACGCGGAGAGCGAATAATTCATAATCGTTCAAGTCTTA
ATTAATAAGAGGCTGTGCTGCGATTCATTCTTTCATTCAATTCTC
Found at i:139319 original size:24 final size:24
Alignment explanation
Indices: 139289--139341 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
139279 GCTCGACTGT
139289 TAAGGACCTTTAGGTGCTCGACCA
1 TAAGGACCTTTAGGTGCTCGACCA
139313 TAAGGACCTTTAGGTGCTCGACCA
1 TAAGGACCTTTAGGTGCTCGACCA
139337 TAAGG
1 TAAGG
139342 GAGAGGGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (24 bp):
TAAGGACCTTTAGGTGCTCGACCA
Left flanking sequence: Indices 138789 -- 139288
CGCCTCCTCTCCCTAGATTGAGAGCCTGCTTGCGCATCCTGAAATGGCCAAATTAGTAGGGTTTT
AACGCTCGACCAGGGGGAGAGGGAAAGATGTGAAAACCTCCGCCTCCTCTCCCTAGCGGTCGAGC
CTGCTTGCGCATCCTAAAATGGAAAAATAGGAGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTC
TGGGAGAGGCAACGAACGCTCGACCACCGCCCCCACCCAATAAGCATCAAGGAAGAAAAACCTCC
GCCAAGCTGTTCGTGGCCTAACACACCCATCCTTTACCCTTTGGATCCTAATCTCATTGGAAAGC
AAGGCAGGCTCAAACCTCCGCCTCCTGAAAATGCTATAATAGGACCCTTTAGGGGGCTCGACTGA
TAAGGACCCTTTAGGGGGCTCGACCATTAGGGAGAGGAGAGGAGGGGAATCTTGAAAAACCTCCG
CCAAGAGAAAATGCTATAATAGGATGCGCAAGCAGGCTCGACTGT
Right flanking sequence: Indices 139342 -- 139841
GAGAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGA
CCATAAGGACCTTTAGGTGCTCGACCTTAAGGGCCGCCATCGCCGCCATCGATTTCTCGCTCGAC
CATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGCCGCCATCGCCGCCATCGCCGCCATCGCCGC
CATCAGCCGTAAGGCCGCTCGACCATAAGGGAGAGGTAAACAACGAGCTCTATTGCCCTAGCTAA
AGGTAGGTTAATCATAGGTATTGGTTAATCAGTCTTGGTTAATCATTGTTAGTGGTTAATAAGTT
CAAGTTGTTAATCAGTTGCATTGGATAGCAGTAGTAGCAGTGATGTTGAGCGGTGGCGGGAGCTA
GCGATGACGGGGGTAGGTGCGCTACTAGGTGACAGTGCAGTATGATGTTGAGCAATGGAAGATCT
ACTGCTTGTTCTTTCGATTGCTTGAGCGAGGGAAGGACAGCTTGG
Found at i:139519 original size:9 final size:9
Alignment explanation
Indices: 139505--139545 Score: 73
Period size: 9 Copynumber: 4.4 Consensus size: 9
139495 GACTGTTAAG
139505 GCCGCCATC
1 GCCGCCATC
139514 GCCGCCATC
1 GCCGCCATC
139523 GCCGCCATC
1 GCCGCCATC
139532 GCCGCCATC
1 GCCGCCATC
139541 AGCCG
1 -GCCG
139546 TAAGGCCGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
9 27 0.87
10 4 0.13
ACGTcount: A:0.12, C:0.54, G:0.24, T:0.10
Consensus pattern (9 bp):
GCCGCCATC
Left flanking sequence: Indices 139005 -- 139504
GACCACCGCCCCCACCCAATAAGCATCAAGGAAGAAAAACCTCCGCCAAGCTGTTCGTGGCCTAA
CACACCCATCCTTTACCCTTTGGATCCTAATCTCATTGGAAAGCAAGGCAGGCTCAAACCTCCGC
CTCCTGAAAATGCTATAATAGGACCCTTTAGGGGGCTCGACTGATAAGGACCCTTTAGGGGGCTC
GACCATTAGGGAGAGGAGAGGAGGGGAATCTTGAAAAACCTCCGCCAAGAGAAAATGCTATAATA
GGATGCGCAAGCAGGCTCGACTGTTAAGGACCTTTAGGTGCTCGACCATAAGGACCTTTAGGTGC
TCGACCATAAGGGAGAGGGAGAGGAGAGGCCCGGTAGGGGCTCACCATTCCGATGGTGAGGACCG
GTAGGGGCTCGACCATAAGGACCTTTAGGTGCTCGACCTTAAGGGCCGCCATCGCCGCCATCGAT
TTCTCGCTCGACCATAAGGATGCGCAAGCAGGCTCGACTGTTAAG
Right flanking sequence: Indices 139546 -- 140045
TAAGGCCGCTCGACCATAAGGGAGAGGTAAACAACGAGCTCTATTGCCCTAGCTAAAGGTAGGTT
AATCATAGGTATTGGTTAATCAGTCTTGGTTAATCATTGTTAGTGGTTAATAAGTTCAAGTTGTT
AATCAGTTGCATTGGATAGCAGTAGTAGCAGTGATGTTGAGCGGTGGCGGGAGCTAGCGATGACG
GGGGTAGGTGCGCTACTAGGTGACAGTGCAGTATGATGTTGAGCAATGGAAGATCTACTGCTTGT
TCTTTCGATTGCTTGAGCGAGGGAAGGACAGCTTGGCGGTAGAGATTGCTTGCTCGTGAGCTAGC
GGGGCAAAAGAAAGTGTTTATGGACCAGTTTGGGATCCAGATTGAGTTCAATAGTAAACATCGGA
GCCAGATAGAGAGCCAATGTAAGGTCCCGGAGGGGCTTGCGCTTCTGAGGGCAAGGAGTTTCACC
AGCGGAAGTAAAGGTATAGCGAATTGACCGAGTCTTTGACCTAGA
Found at i:139629 original size:17 final size:17
Alignment explanation
Indices: 139607--139661 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
139597 GCTAAAGGTA
139607 GGTTAATCATAGGTATT
1 GGTTAATCATAGGTATT
*
139624 GGTTAATC--A-GTCTT
1 GGTTAATCATAGGTATT
* * *
139638 GGTTAATCATTGTTAGT
1 GGTTAATCATAGGTATT
139655 GGTTAAT
1 GGTTAAT
139662 AAGTTCAAGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
14 12 0.40
15 1 0.03
17 17 0.57
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.44
Consensus pattern (17 bp):
GGTTAATCATAGGTATT
Left flanking sequence: Indices 139107 -- 139606
GGAAAGCAAGGCAGGCTCAAACCTCCGCCTCCTGAAAATGCTATAATAGGACCCTTTAGGGGGCT
CGACTGATAAGGACCCTTTAGGGGGCTCGACCATTAGGGAGAGGAGAGGAGGGGAATCTTGAAAA
ACCTCCGCCAAGAGAAAATGCTATAATAGGATGCGCAAGCAGGCTCGACTGTTAAGGACCTTTAG
GTGCTCGACCATAAGGACCTTTAGGTGCTCGACCATAAGGGAGAGGGAGAGGAGAGGCCCGGTAG
GGGCTCACCATTCCGATGGTGAGGACCGGTAGGGGCTCGACCATAAGGACCTTTAGGTGCTCGAC
CTTAAGGGCCGCCATCGCCGCCATCGATTTCTCGCTCGACCATAAGGATGCGCAAGCAGGCTCGA
CTGTTAAGGCCGCCATCGCCGCCATCGCCGCCATCGCCGCCATCAGCCGTAAGGCCGCTCGACCA
TAAGGGAGAGGTAAACAACGAGCTCTATTGCCCTAGCTAAAGGTA
Right flanking sequence: Indices 139662 -- 140161
AAGTTCAAGTTGTTAATCAGTTGCATTGGATAGCAGTAGTAGCAGTGATGTTGAGCGGTGGCGGG
AGCTAGCGATGACGGGGGTAGGTGCGCTACTAGGTGACAGTGCAGTATGATGTTGAGCAATGGAA
GATCTACTGCTTGTTCTTTCGATTGCTTGAGCGAGGGAAGGACAGCTTGGCGGTAGAGATTGCTT
GCTCGTGAGCTAGCGGGGCAAAAGAAAGTGTTTATGGACCAGTTTGGGATCCAGATTGAGTTCAA
TAGTAAACATCGGAGCCAGATAGAGAGCCAATGTAAGGTCCCGGAGGGGCTTGCGCTTCTGAGGG
CAAGGAGTTTCACCAGCGGAAGTAAAGGTATAGCGAATTGACCGAGTCTTTGACCTAGAACCTAC
ACCCGTGGAGATTGTTGCACTTCCTCTGCTACTGATAGCTTAGATGCTTTCTCTGCTGCTAATGG
TGTTATACGTACTGCTTTATGAAAATAAGAATATCATTTTGTTGC
Found at i:142213 original size:20 final size:20
Alignment explanation
Indices: 142188--142257 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 20
142178 ATATATCCTA
142188 CTATCTGTATTTCCTACTAT
1 CTATCTGTATTTCCTACTAT
142208 CTATCTGTATTTCTATCTTTCCTACTAT
1 CTATCTG------TA--TTTCCTACTAT
142236 CTATCTGTATTTCCTACTAT
1 CTATCTGTATTTCCTACTAT
142256 CT
1 CT
142258 GTCTAGGGGC
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
20 20 0.48
22 2 0.05
26 2 0.05
28 18 0.43
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.51
Consensus pattern (20 bp):
CTATCTGTATTTCCTACTAT
Left flanking sequence: Indices 141688 -- 142187
AGAGTTGGCGACTATTCCGCTTGATTAGTTAGATAGGCGGGAGAGTAACCTAGCCTAGAGGAGAG
TTATTGATTCCCGGATAGATAGAGATTATGTCTGTAACGATTTCTTTCCCCCTTACGGGAAAGGG
TTACCTTAACGGGGTTCCTAAGGGGCTAGGGTCTTTCCCAAGTCTCTGGTTCTACGACGCCCCCC
AGAGACAGTATAGATAAGGCTTTTCAGTAACGACGCATTTCATTTAAGCGACTCTATCATTTAAG
CGACTTATTCTCTTGGATGGCAGGTAAGTAACCAGAAAAAAGAGCGATGAACATCGGCAAGCAAT
TCGAGTGACTCACATCTTTCGACAGGTCTGGTTGATTGAGTTAAGAGATAGCCCGCCCGTTGTTC
CAAATAAAGTTCACCCGAGTGCAGCAGTTTCCAATTTCATTTAAGGCGGAGATCCCGGGCATTCG
ATTTCATGCTCGAATTTCCTACTCTCTTTTCTATTATATATCCTA
Right flanking sequence: Indices 142258 -- 142757
GTCTAGGGGCTTACTTACTAATAAAATCGAGGGAGGGGGCATAGGTTGGTTCCCCCCTCCGCGGC
AGATGGGTAAAAGACCCGAATGGGATTTATTAGTAGCCAGATCGAAGGAAGCAGCCGCTATTCAA
CTCAACTCCGCACAGCTCAGTAGCCACAATAGACCGACAACTTGCCCTGGCATCTCATATATATA
TATGTAGCGGCGTCATTGCGACGAAAAGAAAACCCCACTTTTCATAGTTTAGCAAAGATCCGAAG
CTGGCAGTCAAGGTCGTACCGCAACCAATATAACTTTAAGGTCCCGAACCAACGCTAATAACTGA
TAGTAACGTCCAATCTCACTAAGTCGACCGGGTGAACCAAAATCCATTTATCCCGCCCGTATTAA
TCTCTGAATATCTTGGATCCTCGCCCGATCTGACGAAGTAAGTGTCACATGGTTCACATGGTTCG
ATTTGACCAGCCGCGTTAGTGCATATTGTAAGTCATAGATCCATA
Found at i:142223 original size:16 final size:16
Alignment explanation
Indices: 142204--142259 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
142194 GTATTTCCTA
142204 CTATCTATCTGTATTT
1 CTATCTATCTGTATTT
* *
142220 CTATCTTTC-CTA---
1 CTATCTATCTGTATTT
142232 CTATCTATCTGTATTT
1 CTATCTATCTGTATTT
142248 CCTA-CTATCTGT
1 -CTATCTATCTGT
142260 CTAGGGGCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
12 8 0.26
13 2 0.06
15 2 0.06
16 16 0.52
17 3 0.10
ACGTcount: A:0.18, C:0.25, G:0.05, T:0.52
Consensus pattern (16 bp):
CTATCTATCTGTATTT
Left flanking sequence: Indices 141704 -- 142203
CCGCTTGATTAGTTAGATAGGCGGGAGAGTAACCTAGCCTAGAGGAGAGTTATTGATTCCCGGAT
AGATAGAGATTATGTCTGTAACGATTTCTTTCCCCCTTACGGGAAAGGGTTACCTTAACGGGGTT
CCTAAGGGGCTAGGGTCTTTCCCAAGTCTCTGGTTCTACGACGCCCCCCAGAGACAGTATAGATA
AGGCTTTTCAGTAACGACGCATTTCATTTAAGCGACTCTATCATTTAAGCGACTTATTCTCTTGG
ATGGCAGGTAAGTAACCAGAAAAAAGAGCGATGAACATCGGCAAGCAATTCGAGTGACTCACATC
TTTCGACAGGTCTGGTTGATTGAGTTAAGAGATAGCCCGCCCGTTGTTCCAAATAAAGTTCACCC
GAGTGCAGCAGTTTCCAATTTCATTTAAGGCGGAGATCCCGGGCATTCGATTTCATGCTCGAATT
TCCTACTCTCTTTTCTATTATATATCCTACTATCTGTATTTCCTA
Right flanking sequence: Indices 142260 -- 142759
CTAGGGGCTTACTTACTAATAAAATCGAGGGAGGGGGCATAGGTTGGTTCCCCCCTCCGCGGCAG
ATGGGTAAAAGACCCGAATGGGATTTATTAGTAGCCAGATCGAAGGAAGCAGCCGCTATTCAACT
CAACTCCGCACAGCTCAGTAGCCACAATAGACCGACAACTTGCCCTGGCATCTCATATATATATA
TGTAGCGGCGTCATTGCGACGAAAAGAAAACCCCACTTTTCATAGTTTAGCAAAGATCCGAAGCT
GGCAGTCAAGGTCGTACCGCAACCAATATAACTTTAAGGTCCCGAACCAACGCTAATAACTGATA
GTAACGTCCAATCTCACTAAGTCGACCGGGTGAACCAAAATCCATTTATCCCGCCCGTATTAATC
TCTGAATATCTTGGATCCTCGCCCGATCTGACGAAGTAAGTGTCACATGGTTCACATGGTTCGAT
TTGACCAGCCGCGTTAGTGCATATTGTAAGTCATAGATCCATACA
Found at i:143021 original size:31 final size:33
Alignment explanation
Indices: 142983--143060 Score: 106
Period size: 31 Copynumber: 2.4 Consensus size: 33
142973 TTCAATAATA
142983 GTGCTTTCATATCATATATGTGA-TTA-TGTTC
1 GTGCTTTCATATCATATATGTGAGTTACTGTTC
* *
143014 GTGCTTTCATATTATATATTTGAGTTATCGTGTTC
1 GTGCTTTCATATCATATATGTGAGTTA-C-TGTTC
143049 GTGCTTTCATAT
1 GTGCTTTCATAT
143061 TATGTTATCG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
31 21 0.51
32 3 0.07
35 17 0.41
ACGTcount: A:0.21, C:0.13, G:0.17, T:0.50
Consensus pattern (33 bp):
GTGCTTTCATATCATATATGTGAGTTACTGTTC
Left flanking sequence: Indices 142483 -- 142982
AACCCCACTTTTCATAGTTTAGCAAAGATCCGAAGCTGGCAGTCAAGGTCGTACCGCAACCAATA
TAACTTTAAGGTCCCGAACCAACGCTAATAACTGATAGTAACGTCCAATCTCACTAAGTCGACCG
GGTGAACCAAAATCCATTTATCCCGCCCGTATTAATCTCTGAATATCTTGGATCCTCGCCCGATC
TGACGAAGTAAGTGTCACATGGTTCACATGGTTCGATTTGACCAGCCGCGTTAGTGCATATTGTA
AGTCATAGATCCATACATAGGTTGAACAGAGCAGCCTCCACTCGGGCTCTAGGGCAGTTTGGGCA
GTTATGTTTTCAAATAAGTAGTTTCCCCAAACCAAAGATGAGATTGGCTATGTTATTCTATTGAT
CGGTTATTCCTTTATGTTCGGGATGGATGATTTGACCTCGGTGAACATGGGTTTGATCTTCCCAG
TCCCAGGTGAACATGCCAGCCGTCCTCTAAGTGCTTTCAATAATA
Right flanking sequence: Indices 143061 -- 143560
TATGTTATCGTGTTCGAGAGCTGCCTTGCAAGTGGGGATGCTCCGACAAATAACCTTTGAAAGGA
AGGGTTAGTGAGAGAAGGCGAAAGAGGAAGTTGGCACTAGTATGCCATTTTGTGAGCTCCTTCAA
TGGAGTATATTTACTTTACTGTCAGGAAGAACCACCCGATATTACATTCTTTCGGTACCCATATT
AGGGTTATTATATTACATTCTTTCGGTACCCATATTAGGGTGGTTATTACACCAACATTAGACAA
GTTTCTTCCACTGGCATCGACTATTGAAGTGAGATTGATTGCTACGGCTCGAGGTAAATACCTGA
GTAGGCGTATTTCCTTATTCGAACGATATAAAGCATTGGAACCATCCTTATTCGAACGAGATCCA
CGGATAAAGCATTGGAATGGAACCAACCGAACAATCCGATGACTAGATTTCTTTGTATAAAGAAA
GCGCCCAGCACCCTTCCTTCCATTCTATTTCCAGAGTTTCCTCGA
Found at i:145616 original size:14 final size:14
Alignment explanation
Indices: 145597--145649 Score: 92
Period size: 14 Copynumber: 3.9 Consensus size: 14
145587 TTATCGAGGG
145597 AACTTCTGGCCTCC
1 AACTTCTGGCCTCC
145611 AACTTCTGGCCTCC
1 AACTTCTGGCCTCC
145625 AACTTCTGGCCTCC
1 AACTTCTGGCCTCC
145639 --CTTCTGGCCTC
1 AACTTCTGGCCTC
145650 TCATTGGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.28
14 28 0.72
ACGTcount: A:0.11, C:0.43, G:0.15, T:0.30
Consensus pattern (14 bp):
AACTTCTGGCCTCC
Left flanking sequence: Indices 145097 -- 145596
ACAGCTCGTTTTTATTTATAAAGTTGGCATCATTTGATACGTCCCATAAAGAAAAAATCCCCCTA
CAGCACAGCCCCTTTTTTTCCATTTCCGTATAAAGCGCGTAAATGGCCTCTTAACCGGTTTGAAA
GAGCACAGGCCAGTCGAGCAGGGGTAAGGGCTTCCTGAAGTAGTGGTCCAACTTAGGATAAAGGG
AGTGGCTAGGAAAGGGCCAAGTAGCTTGAATATATAGCAAAGAGAATAATAGAGAACACCTCATT
TACTCTCTTTCCTCAATGACATAGCCGCCCAAGTATTAGATCCTTATTGCAGCAGATTTGGTATA
AGATTTCTGCTTTGAGAAAGCCCCAACTCAACGCAATCGGATCTCCCCATGGCCAAACCTAAACG
AAAGGGAGCCTTACGGAAGCCTATGGATACTATTTAAGGGAACTTATTGCCTATGATAAACCTCT
GGCCCTCCTTGAATCACTTCTGGCCTATTTTCAACTTATCGAGGG
Right flanking sequence: Indices 145650 -- 146149
TCATTGGTTAGGTTTATCGGTAGCTTTATCGGTAGCCTGGTTTATTGGTAGCCTTATTATGGGCC
TCTCCGTTGAATAATTGAAGTAAATAGGCAGAAAGGTGGAAGTGGGCATCGAGCTGGTTGAATCT
AGGTGGGTGGTCGAAGTCAGACATCAAGGTGGAAGAAGTGAAGGAAAGGATGTAGGCAGAAAGCT
GGCTGGTCCTGGTCGATCCAACTATAACAACAGGGAGAGAAGAGAGGAGTCTTCTTCGCACGTAG
GCATGTCATATATAACATATATAATATGTGAATATGAATAAGTATAATTGAGAAGGAAGGAAGGA
CATTAGGAAGGAAGAGGACATTGTTAACGCGCATGCATGAATACCTATTACTTACAGAATAATAC
CTTACCAACCCATTAATAAATCCTATCAGCAAAAAAAAGATTGAGGTGTCCAAACACAGATTCGA
AATTCATCATATCTATTCCTGTCAAAGTCACTTTTAGATAGTAGA
Found at i:147166 original size:22 final size:22
Alignment explanation
Indices: 147138--147182 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
147128 TATCGCTAAC
147138 CAAATAGAATCTCGTCATCTCG
1 CAAATAGAATCTCGTCATCTCG
147160 CAAATAGAATCTCGTCATCTCG
1 CAAATAGAATCTCGTCATCTCG
147182 C
1 C
147183 GCGGTGCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (22 bp):
CAAATAGAATCTCGTCATCTCG
Left flanking sequence: Indices 146638 -- 147137
ACTAATAAGGCCGCCATCGGCTCGACTGGTAAGGAGAGGATGCGGAGCACGCTCGACCAACGCCC
CCCACCCAATAAGCATCAAGGGCCCTATATTCTTTAGGGGTCACTCACTATTCCGATGGTGAGGG
TGCGTTAGTACACTCGACTGTCAAGGAGAGGGCCGGCAGGGTGAGGTACGAACGCTCGACTAATA
AGGCCGCCATCGCTCGACCAACGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAATTGAA
ACTTGAAGAACTAAAGGAGAGGGGAACAAACAGAGAAGTACGGTGATTGGATTCGAGAAAGCGTA
ATGACATATATAATATATGCATTCACGCTCTCTCGATCGAATAATGAATTCGATAGCGTAATTAC
ATATATAATATATGCACTGTGTCTGCTCGAGAAAGTGTCGAAATGACGCGTAGATCTAAGAAGAG
CGACAATGACGTAATGACGTAGAGAATGGCGGAGATATCGCTAAC
Right flanking sequence: Indices 147183 -- 147682
GCGGTGCATTTCTCGAACCATGTATCCACACCATTTAGGAATAGCCAAAAGCGCCGGCACGAAGA
TCTGAGATGTCTTCCCGGGCGGGCATCATTGTCAGACGGGAAACACACCCGATCCCATACCGACC
TCGATATGTGAAATCGTCTTACGCCATATGTACTGATCTTTCTCGGGAGACATGGTCAAAGCCCG
CTCTGAGATCTGAAACTCAAAGGATGCGTAAGCAGGCTCGACTGATAAGGAGAGGTCCGGCAGGG
TGAGTAAACGTGGGAGGTCCGTCAGGGGCTCGACTGATAAGGAGAGGAGACGAGCAACTCTCTGG
GGGGGGAAGGGGCCCCAAAAGAGAGGACCGACAGGGTGCGTAAGCACACTCGACTGTCAAGGAGA
GGGGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTATG
GGAGAGGTAACGTGTGAGGTCCGTCAGGGGCTCGACTGATAAGGA
Found at i:147441 original size:28 final size:28
Alignment explanation
Indices: 147409--147489 Score: 69
Period size: 27 Copynumber: 2.9 Consensus size: 28
147399 GGATGCGTAA
147409 GCAGGCTCGACTGATAAGGAGAGGTCCG
1 GCAGGCTCGACTGATAAGGAGAGGTCCG
* * *
147437 GCAGGGT-GAGT-A-AACGTGGGAGGTCCG
1 GCAGGCTCGACTGATAA-G-GAGAGGTCCG
*
147464 TCAGGGGCTCGACTGATAAGGAGAGG
1 GCA--GGCTCGACTGATAAGGAGAGG
147490 AGACGAGCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
25 2 0.05
26 2 0.05
27 14 0.36
28 6 0.15
29 3 0.08
30 8 0.21
31 2 0.05
32 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.43, T:0.15
Consensus pattern (28 bp):
GCAGGCTCGACTGATAAGGAGAGGTCCG
Left flanking sequence: Indices 146909 -- 147408
TAAAGGAGAGGGGAACAAACAGAGAAGTACGGTGATTGGATTCGAGAAAGCGTAATGACATATAT
AATATATGCATTCACGCTCTCTCGATCGAATAATGAATTCGATAGCGTAATTACATATATAATAT
ATGCACTGTGTCTGCTCGAGAAAGTGTCGAAATGACGCGTAGATCTAAGAAGAGCGACAATGACG
TAATGACGTAGAGAATGGCGGAGATATCGCTAACCAAATAGAATCTCGTCATCTCGCAAATAGAA
TCTCGTCATCTCGCGCGGTGCATTTCTCGAACCATGTATCCACACCATTTAGGAATAGCCAAAAG
CGCCGGCACGAAGATCTGAGATGTCTTCCCGGGCGGGCATCATTGTCAGACGGGAAACACACCCG
ATCCCATACCGACCTCGATATGTGAAATCGTCTTACGCCATATGTACTGATCTTTCTCGGGAGAC
ATGGTCAAAGCCCGCTCTGAGATCTGAAACTCAAAGGATGCGTAA
Right flanking sequence: Indices 147490 -- 147989
AGACGAGCAACTCTCTGGGGGGGGAAGGGGCCCCAAAAGAGAGGACCGACAGGGTGCGTAAGCAC
ACTCGACTGTCAAGGAGAGGGGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGGGTGAGCCTG
TCGAACTCTCGACCTATGGGAGAGGTAACGTGTGAGGTCCGTCAGGGGCTCGACTGATAAGGATG
CGCAAGCAGGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGA
CTGTTAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCCTCACCATATGAATAGTGAGTGACCC
CTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGT
TGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGG
ACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAG
Found at i:147580 original size:21 final size:21
Alignment explanation
Indices: 147556--147595 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
147546 CGTAAGCACA
147556 CTCGACTG-TCAAGGAGAGGGG
1 CTCGACTGAT-AAGGAGAGGGG
147577 CTCGACTGATAAGGAGAGG
1 CTCGACTGATAAGGAGAGG
147596 TCCGGCAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.28, C:0.17, G:0.40, T:0.15
Consensus pattern (21 bp):
CTCGACTGATAAGGAGAGGGG
Left flanking sequence: Indices 147056 -- 147555
GAGAAAGTGTCGAAATGACGCGTAGATCTAAGAAGAGCGACAATGACGTAATGACGTAGAGAATG
GCGGAGATATCGCTAACCAAATAGAATCTCGTCATCTCGCAAATAGAATCTCGTCATCTCGCGCG
GTGCATTTCTCGAACCATGTATCCACACCATTTAGGAATAGCCAAAAGCGCCGGCACGAAGATCT
GAGATGTCTTCCCGGGCGGGCATCATTGTCAGACGGGAAACACACCCGATCCCATACCGACCTCG
ATATGTGAAATCGTCTTACGCCATATGTACTGATCTTTCTCGGGAGACATGGTCAAAGCCCGCTC
TGAGATCTGAAACTCAAAGGATGCGTAAGCAGGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGA
GTAAACGTGGGAGGTCCGTCAGGGGCTCGACTGATAAGGAGAGGAGACGAGCAACTCTCTGGGGG
GGGAAGGGGCCCCAAAAGAGAGGACCGACAGGGTGCGTAAGCACA
Right flanking sequence: Indices 147596 -- 148095
TCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTATGGGAGAGGTAACGTGTGAGGTCCG
TCAGGGGCTCGACTGATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGACCTTTAGGTGCTCGAC
TGATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCCT
CACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGG
ACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAG
GACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGAGGGAGAGGATGCG
TAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGG
GCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACC
Found at i:147732 original size:25 final size:25
Alignment explanation
Indices: 147694--147759 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
147684 GCGCAAGCAG
147694 GCTCGACTGTTAAGGACCTTTAGGT
1 GCTCGACTGTTAAGGACCTTTAGGT
*
147719 GCTCGACTGATAAGGACCTTTAGGT
1 GCTCGACTGTTAAGGACCTTTAGGT
147744 GCTCGACTGTTAAGGA
1 GCTCGACTGTTAAGGA
147760 TGCGCAAGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (25 bp):
GCTCGACTGTTAAGGACCTTTAGGT
Left flanking sequence: Indices 147194 -- 147693
CTCGAACCATGTATCCACACCATTTAGGAATAGCCAAAAGCGCCGGCACGAAGATCTGAGATGTC
TTCCCGGGCGGGCATCATTGTCAGACGGGAAACACACCCGATCCCATACCGACCTCGATATGTGA
AATCGTCTTACGCCATATGTACTGATCTTTCTCGGGAGACATGGTCAAAGCCCGCTCTGAGATCT
GAAACTCAAAGGATGCGTAAGCAGGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGTAAACGT
GGGAGGTCCGTCAGGGGCTCGACTGATAAGGAGAGGAGACGAGCAACTCTCTGGGGGGGGAAGGG
GCCCCAAAAGAGAGGACCGACAGGGTGCGTAAGCACACTCGACTGTCAAGGAGAGGGGCTCGACT
GATAAGGAGAGGTCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTATGGGAGAGGTAAC
GTGTGAGGTCCGTCAGGGGCTCGACTGATAAGGATGCGCAAGCAG
Right flanking sequence: Indices 147760 -- 148259
TGCGCAAGCATGCTCGACTGTTAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATA
TAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTG
GGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGT
GCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATA
TGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTA
GGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTT
AGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAG
GGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGG
Found at i:147949 original size:23 final size:23
Alignment explanation
Indices: 147919--147962 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
147909 CCAAGAGGAG
147919 AGGACCTTTAGGTGCTCGACCAT
1 AGGACCTTTAGGTGCTCGACCAT
147942 AGGACCTTTAGGTGCTCGACC
1 AGGACCTTTAGGTGCTCGACC
147963 TTAAGGGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
AGGACCTTTAGGTGCTCGACCAT
Left flanking sequence: Indices 147419 -- 147918
CTGATAAGGAGAGGTCCGGCAGGGTGAGTAAACGTGGGAGGTCCGTCAGGGGCTCGACTGATAAG
GAGAGGAGACGAGCAACTCTCTGGGGGGGGAAGGGGCCCCAAAAGAGAGGACCGACAGGGTGCGT
AAGCACACTCGACTGTCAAGGAGAGGGGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGGGTG
AGCCTGTCGAACTCTCGACCTATGGGAGAGGTAACGTGTGAGGTCCGTCAGGGGCTCGACTGATA
AGGATGCGCAAGCAGGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGACCTTTAGGT
GCTCGACTGTTAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCCTCACCATATGAATAGTGAG
TGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACC
CAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAG
Right flanking sequence: Indices 147963 -- 148462
TTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGT
GAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCG
ACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTC
GACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCG
ACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGA
GGGCCGCCATCGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCCACCACCCAATAAGCATC
AAGGGGCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGGTTACCCTGCGTAGGCTG
AATATAACCCTAAGAATTTGGCCATCCGGTCAGGCAGTAAGTTGG
Found at i:148142 original size:222 final size:222
Alignment explanation
Indices: 147756--148160 Score: 783
Period size: 222 Copynumber: 1.8 Consensus size: 222
147746 TCGACTGTTA
* *
147756 AGGATGCGCAAGCATGCTCGACTGTTAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAG
1 AGGATGCGCAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAG
147821 AATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTT
66 AATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTT
147886 ATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTT
131 ATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTT
147951 AGGTGCTCGACCTTAAGGGAGAGGGAG
196 AGGTGCTCGACCTTAAGGGAGAGGGAG
*
147978 AGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAG
1 AGGATGCGCAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAG
148043 AATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTT
66 AATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTT
148108 ATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGAC
131 ATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGAC
148161 TGTTAAGGAC
Statistics
Matches: 180, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
222 180 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (222 bp):
AGGATGCGCAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAG
AATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTT
ATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTT
AGGTGCTCGACCTTAAGGGAGAGGGAG
Left flanking sequence: Indices 147256 -- 147755
GTCTTCCCGGGCGGGCATCATTGTCAGACGGGAAACACACCCGATCCCATACCGACCTCGATATG
TGAAATCGTCTTACGCCATATGTACTGATCTTTCTCGGGAGACATGGTCAAAGCCCGCTCTGAGA
TCTGAAACTCAAAGGATGCGTAAGCAGGCTCGACTGATAAGGAGAGGTCCGGCAGGGTGAGTAAA
CGTGGGAGGTCCGTCAGGGGCTCGACTGATAAGGAGAGGAGACGAGCAACTCTCTGGGGGGGGAA
GGGGCCCCAAAAGAGAGGACCGACAGGGTGCGTAAGCACACTCGACTGTCAAGGAGAGGGGCTCG
ACTGATAAGGAGAGGTCCGGCAGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTATGGGAGAGGT
AACGTGTGAGGTCCGTCAGGGGCTCGACTGATAAGGATGCGCAAGCAGGCTCGACTGTTAAGGAC
CTTTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTA
Right flanking sequence: Indices 148161 -- 148660
TGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACT
GATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGG
CCGCCATCGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCCACCACCCAATAAGCATCAAG
GGGCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGGTTACCCTGCGTAGGCTGAAT
ATAACCCTAAGAATTTGGCCATCCGGTCAGGCAGTAAGTTGGTCCTGGGGGTTGACCTTTCAGGA
TGCGGAAGCAGGCTCGACCATTTCTTATAGCCTAATTTGGCCCTTATTACTCTATTTTATTCACT
TTGGTTCGGGTCTAAAGAAAGACGACCAGCACTCCATTATTGCTTTGCAATATTGATTAGTTAAT
AAGTATCATGCATTCGCTTTACCCTCATACTAGCTGGCTGCTTCT
Found at i:148230 original size:27 final size:27
Alignment explanation
Indices: 148213--148270 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
148203 AGGACCCTTT
* *
148213 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
148240 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
148267 AGGG
1 AGGG
148271 CCGCCATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.50, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 147713 -- 148212
TTAGGTGCTCGACTGATAAGGACCTTTAGGTGCTCGACTGTTAAGGATGCGCAAGCATGCTCGAC
TGTTAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGC
TCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAA
CCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGGTGCTCGACCTTAAGGGAGA
GGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCATATGAATAGTGAGTGACCCC
TAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTT
GACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 148271 -- 148770
CCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGATGCGGAGCACGCTCGACCACCGCCC
ACCACCCAATAAGCATCAAGGGGCATTTGCGTGCGTTTTACGGCTACTTGACACGCCCAAGCGGG
TTACCCTGCGTAGGCTGAATATAACCCTAAGAATTTGGCCATCCGGTCAGGCAGTAAGTTGGTCC
TGGGGGTTGACCTTTCAGGATGCGGAAGCAGGCTCGACCATTTCTTATAGCCTAATTTGGCCCTT
ATTACTCTATTTTATTCACTTTGGTTCGGGTCTAAAGAAAGACGACCAGCACTCCATTATTGCTT
TGCAATATTGATTAGTTAATAAGTATCATGCATTCGCTTTACCCTCATACTAGCTGGCTGCTTCT
ACCTTCCCCACGATAGCTAACTAAGGACCTTCATTCCGCTCGCCTCCCATTATGAAATGCGCCCC
CTTACTTCACAAAGAGAGCTTAAATCGCTCGCCCCTAACATTACT
Found at i:148284 original size:20 final size:20
Alignment explanation
Indices: 148259--148309 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
148249 GACTGATAAG
148259 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
148279 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
148299 GAGAGGAGAGG
1 GAGAGGAGAGG
148310 ATGCGGAGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.49, T:0.04
Consensus pattern (20 bp):
GAGAGGAGAGGGCCGCCATC
Left flanking sequence: Indices 147759 -- 148258
ATGCGCAAGCATGCTCGACTGTTAAGGACCCTCACCATATGAATAGTGAGTGACCCCTAAAGAAT
ATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATT
GGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACCATAGGACCTTTAGG
TGCTCGACCTTAAGGGAGAGGGAGAGGATGCGTAAGCAGGCTCGACTGATAAGGACCCTCACCAT
ATGAATAGTGAGTGACCCCTAAAGAATATAGGGCCCTTTAGGGGGCTCGACTGATAAGGACCTTT
AGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTT
TAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTA
GGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAG
Right flanking sequence: Indices 148310 -- 148809
ATGCGGAGCACGCTCGACCACCGCCCACCACCCAATAAGCATCAAGGGGCATTTGCGTGCGTTTT
ACGGCTACTTGACACGCCCAAGCGGGTTACCCTGCGTAGGCTGAATATAACCCTAAGAATTTGGC
CATCCGGTCAGGCAGTAAGTTGGTCCTGGGGGTTGACCTTTCAGGATGCGGAAGCAGGCTCGACC
ATTTCTTATAGCCTAATTTGGCCCTTATTACTCTATTTTATTCACTTTGGTTCGGGTCTAAAGAA
AGACGACCAGCACTCCATTATTGCTTTGCAATATTGATTAGTTAATAAGTATCATGCATTCGCTT
TACCCTCATACTAGCTGGCTGCTTCTACCTTCCCCACGATAGCTAACTAAGGACCTTCATTCCGC
TCGCCTCCCATTATGAAATGCGCCCCCTTACTTCACAAAGAGAGCTTAAATCGCTCGCCCCTAAC
ATTACTTCGCTAACCTTTCCGGAATGGGAAGAGAGGGGGGGCATG
Found at i:155625 original size:8 final size:8
Alignment explanation
Indices: 155612--155642 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
155602 TGGGAAGGAC
155612 CTCCATCG
1 CTCCATCG
155620 CTCCATCG
1 CTCCATCG
155628 CTCCATCG
1 CTCCATCG
*
155636 ATCCATC
1 CTCCATC
155643 CATGCATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.16, C:0.48, G:0.10, T:0.26
Consensus pattern (8 bp):
CTCCATCG
Left flanking sequence: Indices 155112 -- 155611
GATTGGTCTGAAGCATGATCCGAGATTCAGCTATTGACTGCCTACACCTGATAGTAGTTACTTAC
CATACGACCTAGACCTTTTAGCCCTGGCTGGATGGCTGGCTTTCTTTCTAGCTTTCTTTCTGGCT
GACTAACTGACTGACAGGAACTTCAATGGCTGGCTTAAAAGTGGGAATTTCACTAATGAAACCTG
GCGTTGCCCATCCAGAGTCATACTAGCCGTACAACACTTGTGGGCGGCGTGTTCGCTAAGGCACT
TGACGTTCAACCCCTCGACTTTAGCCGTATCCGTTGGTCATTCATTATATATGAGATTATACCAC
CATCGCTGATTCATTCACTTACGATATTAGAGCATCGCTGATTCATTCACTAATTCGTTCATTCA
TAGGCTTTTGAGATTCCTTTCATTGCCATTGCTCCATCCATGCATCGATCCGCCAGCCGGGTGAC
TGTTCAATCGCATCCCGCCATCCGGGTAACAACGATGGGAAGGAC
Right flanking sequence: Indices 155643 -- 156142
CATGCATCAATCCGGTGACTACTGGGCACTACCGCCATCCATCCGGGGAACAATGGTCAATACAG
CCGGTGACTACTGGGCACTACCGCCATCCAGCCAAGACTGTTCGATCCCGCCCGGCATTTCCCTT
CCCACCATCAATAAATCCATAACTAAATCCATCGCTCGATCGATCAATCCGGGAAACAATGGGAA
AGACAGCCGGATAATACAGTGAAATCCCGCCATCTGAGTAACAATGGGAAGGACCGCTCTCCGGG
GTATGATGGTAAATACCGCCGTCCAGGTAACGTGTAAGATAGCGTGTAAGGAGGCCAACCGGGTA
ACGTGGAAGTAATAGGGTGTAAGAGGGTTGGAATAGGTTGGAAGTAAGAACATGGAAGAGGGTGA
GCCAGGCAACGTGTAAGGCAACGTTCTATAAATGTGTAAGTAAGCAGTCCGCAGTCAGGAACAAG
CCACTAACTTACCTCACTCGGGAAGGTAAAGCAAGCCAGCCAGGC
Found at i:156166 original size:15 final size:15
Alignment explanation
Indices: 156146--156178 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
156136 GCCAGGCGTA
156146 AGGTATAGCCATCCG
1 AGGTATAGCCATCCG
156161 AGGTATAGCCATCCG
1 AGGTATAGCCATCCG
156176 AGG
1 AGG
156179 GAAATGGGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.18
Consensus pattern (15 bp):
AGGTATAGCCATCCG
Left flanking sequence: Indices 155646 -- 156145
GCATCAATCCGGTGACTACTGGGCACTACCGCCATCCATCCGGGGAACAATGGTCAATACAGCCG
GTGACTACTGGGCACTACCGCCATCCAGCCAAGACTGTTCGATCCCGCCCGGCATTTCCCTTCCC
ACCATCAATAAATCCATAACTAAATCCATCGCTCGATCGATCAATCCGGGAAACAATGGGAAAGA
CAGCCGGATAATACAGTGAAATCCCGCCATCTGAGTAACAATGGGAAGGACCGCTCTCCGGGGTA
TGATGGTAAATACCGCCGTCCAGGTAACGTGTAAGATAGCGTGTAAGGAGGCCAACCGGGTAACG
TGGAAGTAATAGGGTGTAAGAGGGTTGGAATAGGTTGGAAGTAAGAACATGGAAGAGGGTGAGCC
AGGCAACGTGTAAGGCAACGTTCTATAAATGTGTAAGTAAGCAGTCCGCAGTCAGGAACAAGCCA
CTAACTTACCTCACTCGGGAAGGTAAAGCAAGCCAGCCAGGCGTA
Right flanking sequence: Indices 156179 -- 156678
GAAATGGGAGCCAAAGCCAGGGGAATGGGAGATAAAGCCAGACAGCCCCAGCCAGGGAAGTAGAG
GGAACGTAAGTAGGGAAGCAGACAGTATAAAAGCCAGGGTACGCGTAACAGTCTGGAAGCCAGAT
AGGTAACGTGTAAGGAAGAAAGCCAGGCAACGTGGAAGTGGGGTTTGTCTTAGGCATTTTGTAAG
GCATAATCCCCGACCGTACTTGGCAGTTTGCTCATAAGCCCCGGCCGTACTTGTCGGACTTGGCC
TTCAATCCATTCGTGAGGAAGCGAGAAGCTACTCTCTTTTGGGCTATGGGTCCTAAGACACAATC
CAACCAAAGGGAGAGTCGGGAGAGACAGATATCGTTGCTCGACCAAAGGGAGAGTAAGGATGGAT
ATTAACACCCTTACTTACCGGGTTGGAAGGCGAAGCCTGACCTCACACCCACTCCTATTGACGGG
TTGGAAGGCGAAGCCTGACCTCCCTCCATCCATGGGCGCAGCCTT
Found at i:156205 original size:21 final size:21
Alignment explanation
Indices: 156176--156219 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
156166 TAGCCATCCG
*
156176 AGGGAAATGGGAGCCAAAGCC
1 AGGGAAATGGGAGACAAAGCC
* *
156197 AGGGGAATGGGAGATAAAGCC
1 AGGGAAATGGGAGACAAAGCC
156218 AG
1 AG
156220 ACAGCCCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.14, G:0.41, T:0.07
Consensus pattern (21 bp):
AGGGAAATGGGAGACAAAGCC
Left flanking sequence: Indices 155676 -- 156175
GCCATCCATCCGGGGAACAATGGTCAATACAGCCGGTGACTACTGGGCACTACCGCCATCCAGCC
AAGACTGTTCGATCCCGCCCGGCATTTCCCTTCCCACCATCAATAAATCCATAACTAAATCCATC
GCTCGATCGATCAATCCGGGAAACAATGGGAAAGACAGCCGGATAATACAGTGAAATCCCGCCAT
CTGAGTAACAATGGGAAGGACCGCTCTCCGGGGTATGATGGTAAATACCGCCGTCCAGGTAACGT
GTAAGATAGCGTGTAAGGAGGCCAACCGGGTAACGTGGAAGTAATAGGGTGTAAGAGGGTTGGAA
TAGGTTGGAAGTAAGAACATGGAAGAGGGTGAGCCAGGCAACGTGTAAGGCAACGTTCTATAAAT
GTGTAAGTAAGCAGTCCGCAGTCAGGAACAAGCCACTAACTTACCTCACTCGGGAAGGTAAAGCA
AGCCAGCCAGGCGTAAGGTATAGCCATCCGAGGTATAGCCATCCG
Right flanking sequence: Indices 156220 -- 156719
ACAGCCCCAGCCAGGGAAGTAGAGGGAACGTAAGTAGGGAAGCAGACAGTATAAAAGCCAGGGTA
CGCGTAACAGTCTGGAAGCCAGATAGGTAACGTGTAAGGAAGAAAGCCAGGCAACGTGGAAGTGG
GGTTTGTCTTAGGCATTTTGTAAGGCATAATCCCCGACCGTACTTGGCAGTTTGCTCATAAGCCC
CGGCCGTACTTGTCGGACTTGGCCTTCAATCCATTCGTGAGGAAGCGAGAAGCTACTCTCTTTTG
GGCTATGGGTCCTAAGACACAATCCAACCAAAGGGAGAGTCGGGAGAGACAGATATCGTTGCTCG
ACCAAAGGGAGAGTAAGGATGGATATTAACACCCTTACTTACCGGGTTGGAAGGCGAAGCCTGAC
CTCACACCCACTCCTATTGACGGGTTGGAAGGCGAAGCCTGACCTCCCTCCATCCATGGGCGCAG
CCTTACCTTCCCTCCATCCATTTCGCTATTGCTCCTTGTACCCTT
Found at i:156695 original size:29 final size:28
Alignment explanation
Indices: 156640--156695 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
156630 CGGGTTGGAA
156640 GGCGAAGCCTGACCTCCCTCCATCCATG
1 GGCGAAGCCTGACCTCCCTCCATCCATG
* *
156668 GGCGCAGCCTTACCTTCCCTCCATCCAT
1 GGCGAAGCCTGACC-TCCCTCCATCCAT
156696 TTCGCTATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.16, C:0.45, G:0.18, T:0.21
Consensus pattern (28 bp):
GGCGAAGCCTGACCTCCCTCCATCCATG
Left flanking sequence: Indices 156140 -- 156639
GGCGTAAGGTATAGCCATCCGAGGTATAGCCATCCGAGGGAAATGGGAGCCAAAGCCAGGGGAAT
GGGAGATAAAGCCAGACAGCCCCAGCCAGGGAAGTAGAGGGAACGTAAGTAGGGAAGCAGACAGT
ATAAAAGCCAGGGTACGCGTAACAGTCTGGAAGCCAGATAGGTAACGTGTAAGGAAGAAAGCCAG
GCAACGTGGAAGTGGGGTTTGTCTTAGGCATTTTGTAAGGCATAATCCCCGACCGTACTTGGCAG
TTTGCTCATAAGCCCCGGCCGTACTTGTCGGACTTGGCCTTCAATCCATTCGTGAGGAAGCGAGA
AGCTACTCTCTTTTGGGCTATGGGTCCTAAGACACAATCCAACCAAAGGGAGAGTCGGGAGAGAC
AGATATCGTTGCTCGACCAAAGGGAGAGTAAGGATGGATATTAACACCCTTACTTACCGGGTTGG
AAGGCGAAGCCTGACCTCACACCCACTCCTATTGACGGGTTGGAA
Right flanking sequence: Indices 156696 -- 157195
TTCGCTATTGCTCCTTGTACCCTTTCCTCGATATAGTAATTGACTCGATAGAGATAGTCACCCGA
AAGACTTACTCTGACTCTTAAGGGAGCTCTGCTCAGGTTTTACAGAATTCCATCCGTAATAACTG
AACTCTACGGCACCGAGGAATCGAACCCCTTTGAACCATATAAAAACTACCGCAACGTATATAAC
GCGCCTGGATCAAGACCGAAGGCGAAGGCAAGTCCCCATTCCTATGACCGCTCCTATTCCCTTGC
ACCCAGGCCCACTTCCATAGCGGACATGCCAGTAGTTGATCCATCCAAGTGTTGATGTCAGCCTT
AGAAGAATTAATCAGGTATACTGGAAGCGCAGTATACGGAAAACAATATGGATAGGAACGAACGC
TCGATTCCTTATTTAGGGCCCAAGCAACTCCTTATTCATTTTCCTTCTCGACCCAAGGAAAGAAA
TAAGCGAACCTGAGCTCGCCCCGGCAGATCGGCCTTCCCTTCCTT
Found at i:161368 original size:27 final size:26
Alignment explanation
Indices: 161300--161378 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
161290 TTTTGATTAG
161300 CCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCTCTCCTCTCCTTATCAGTCGAGC
****
161326 CCC-CTAAAGGGTCCTTATCAGTCGAGC
1 CCCTCT--CCTCTCCTTATCAGTCGAGC
*
161353 CCCTCTCCTCTCCCTTAT-GGTCGAGC
1 CCCTCTCCTCT-CCTTATCAGTCGAGC
161379 ACCTAAAGGT
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
25 2 0.05
26 11 0.28
27 25 0.62
28 2 0.05
ACGTcount: A:0.14, C:0.42, G:0.16, T:0.28
Consensus pattern (26 bp):
CCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 160800 -- 161299
AAGTAAATTGAACTTCTCTTTTCTTTATCTCGGGGTGGCTCAATAGGGTACGAAAGCGGGGAATG
ATAGGTAGCTTTTTTTGTAAGATGTGGGCTGTTGTCTGTGCCTATCCCGCCCGTAAGATGGGTCA
GTATAAGAGCTTACATTATATACGTAATTCTACAACAACGGGCTCAGCAACTTTTCTCATCAACA
GGTGAATCGTAAGTAAGCATCATGCATCGGTTGAAAAACGGAAAAGAAGACGTGCTCCATCGGTT
CCAAAACCTAACCTACAAGAAGCCATCGACTCCTGGCATGAAGTATCAGGGGATTGAGTGCATCA
ACACCTGCGACTAGTGGTTCCCGGCAATGATCAGCAATGTGAGGTGTAGAGACCAAGGGAAGAGT
TTCGGGGGTAGAGAACATGGGGCTTTAGATTATACCTTGCATCGGGAGATAGATTATACCTCGAT
GGGTAGTTATATTGGCTCATATTGGGTACGAAAGATTTTGATTAG
Right flanking sequence: Indices 161379 -- 161878
ACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCCTGCTTGCGCATCCTT
GACAGTCGAGTGTGCTTACGCACCCTGCCGGTCCTCACCATATGAATAGTGAGTCCCTCCGGGCC
TCGACCTCGTAACCTCAGTCGAGTCCCTCCGGGCCTATCGTCGCTTCCACCCTCTCACTCGTGAA
TTTACCAGTTTCGATTGCTCAGTTCAACGATCCATTAAGCATTCGCAACGCCAGGTTCTCACTCG
TGAATTTCCCACCATCTGGATGGACCAGGTTCACATAGGAAGGATAACTTGATAGGCTACGTTCG
CATTCTCTCTCATCTGGATACGTCACCTTTGCTTCCTTAATTTACCACTTCAATCAAGGCCAGGT
AAACAGAGGAGAACTCGTCGATAGGTCCGCACTCTCTATCATCTGGAGACGCCACCTTCTCACTC
GTGAATTTACCAGTTTCAATTGCTAAGTTCAACGAATCAAGCATT
Found at i:162492 original size:25 final size:23
Alignment explanation
Indices: 162438--162492 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
162428 AAGACACTTT
162438 ATACCGCTTATACCACCTATACTC
1 ATACC-CTTATACCACCTATACTC
*
162462 AGACCCTTATACTCACTCTAT-CTCC
1 ATACCCTTATAC-CAC-CTATACT-C
162487 ATACCC
1 ATACCC
162493 ATCCTACCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 7 0.27
24 9 0.35
25 10 0.38
ACGTcount: A:0.27, C:0.40, G:0.04, T:0.29
Consensus pattern (23 bp):
ATACCCTTATACCACCTATACTC
Left flanking sequence: Indices 161938 -- 162437
AGCAAGACCAATAATACCAGCCATATCATCCATCCTATACATCCGCCTTATTACGTATATAACTG
CATCTGGCCCTAGCACAGAATTGGGATCTGGGCAGAAAGAAAGAAACCCCTTTCTGTGTGAATAA
GCTAGTCCGAGCTCCCGCCGGCGTACACATCATTCCCAAACTTCTTTCGGCTGTGGAACTGAATC
TAAATCTCCCTCTCAACGCAATGAAAGGTAGGTGTTTCAAGCTGTAGACGAGGCAAAGAAATTCC
ATCGAATGGGATAGAGAACATTCATTCATGTACTCAACTGCTGAATCCACGCATTGAGAATAACA
TTTTACAGAAAGCTAGCTGGTCGGCTTACTAACTGGGATGGGTTATTCATAACCACCTTTACACC
CTTCAAACGGGGTTTTACCCATTGAAACATAATACAAATTAGCCTTCCACACTTCATTCAATCAA
GGAAGCATACTAACCCTCCATAAAACTATCATACTAAGACACTTT
Right flanking sequence: Indices 162493 -- 162992
ATCCTACCTTCTATATAGCTATACACATCTATATCCCCAGCTAGCTCTATCTATCTACTTAGATG
CCTATACTGCCTAACCTACCCTACCTGCCTACCCAACCCACCTTACCTTGACCTACCTACACTCA
GTAGACTCCTCCTTCCAACCAAGCTCACTCAATCAAGGAATCAAGGATAGGTACCAGAGGGTCTA
TAGCCATCAGTCAAGCAAACAGACTAGGGTGGTTATTCAGTAGAACAACCTGCCTTATGATCCAG
TCACACCTGCCTTCCTCATAATCAGTACTTCAGTCCTTCTTAGCACACCAGCTTTCTTAGCCACC
CATCGAACCTTCTTACCTGCCTTCATATTGGTGATTGATCCGGGTTCCTGCTGCCCGATCTCTAT
CCACCTGTTTACCGGACCTTTACTTACTGCTTTAACCACCCTTGTTAATGCATGGAGTGCTACCT
GCCCTAACCACTTGCTTCAGCCAGGAATCTTAGTTAGTTAGTGGT
Found at i:163922 original size:27 final size:27
Alignment explanation
Indices: 163884--163964 Score: 153
Period size: 27 Copynumber: 3.0 Consensus size: 27
163874 ATTGAGCAAC
163884 GAATGAATGCATAATGACATATATAAT
1 GAATGAATGCATAATGACATATATAAT
*
163911 GAATGAATGCATAATGACATATATAAA
1 GAATGAATGCATAATGACATATATAAT
163938 GAATGAATGCATAATGACATATATAAT
1 GAATGAATGCATAATGACATATATAAT
163965 ATATGCATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.28
Consensus pattern (27 bp):
GAATGAATGCATAATGACATATATAAT
Left flanking sequence: Indices 163384 -- 163883
TTAACGCTTCATCCTACTTAGTTTATGGATGGAGGGAGTACTGCTTGCCCTTACCAACCAATTGA
TTAAGCCAGGTAGGGCTTAAGGCTGGGGGGCTGGGTGAAGGCTTATCTTGCTGGCTTCTGGCTGG
GCTCTGGCTTCATCTAAGGTAAGGTTGTGTCATGCCGTCTTTGCCCCATACAACTTGAGCTATTC
CCCTTCATCTTAGCCCATACAACTTTTTTACCCTGAAACTACTTGCTTGACCTATGACCTTTGAA
TGCATGTTCCAACCCTTCAACTACCTCTCCCCCTTGTCGAGAGTTCGACAGGCTCACCCCCACCC
AATAACGCGGAGGTTTGATGCTTTGGCCCTTGCCCGATGCGGACAAGCGACTACGTTGATGGCGG
CCCCCTTGTCGAGAGTTCGATTCCTCACCCTTGCCCGATGCGGACAAGCGACTACGTTCCTACGA
GATTAGCCATTTGACCGTGGCGGAGGTTTTGGAATATTGAGCAAC
Right flanking sequence: Indices 163965 -- 164464
ATATGCATTGTCGATCGAGCTATCAAAATACCATGCGGAGAGCCTCTCTTTTGGGGCCCCTCCCC
CTTCTTTGGTCGGGAGAGTGGGTCGGTATTTGGTAGAATTTACCAGTTTATGACAGTGAAATGCC
TCTCCTCGACCTCGTAACCTCGGCCGAGTCCCTCACTTCTTTGGGGAAGGTGAGCGAGAAATCCC
TCCGGGCCTTTAGTCGAGAGTTCGGCAAGCTCACCCTAGTTATCGCTGGTCCAATTACCTAATAA
ACCTTCCGTCGATTCAATGAAAACGGGCATAGATGGCACTCGAGAAAGGAATTTCTATTGGAGTT
CTCAAAAGGCATTGAAGTGCATGGAGATTGTGAGCTCATTTGCAGACAGTATTTTCTTTCTTTCT
TCGAACTTGCTGCTTGCTGGATGGCTGGACGGAATGATTGATGGTACCGCTGCCTAGAATAATGA
AGAGGGTGCTTACAATCCAAATTAAGATATTATATATGTAATTAC
Found at i:165454 original size:15 final size:15
Alignment explanation
Indices: 165434--165477 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
165424 GACTTTATAT
*
165434 GCTGTAGGCGGGCTG
1 GCTGTAGGCAGGCTG
*
165449 GCTGTAGGTAGGCTG
1 GCTGTAGGCAGGCTG
*
165464 GCTGTAGGTAGGCT
1 GCTGTAGGCAGGCT
165478 TAGAGCTCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.11, C:0.16, G:0.48, T:0.25
Consensus pattern (15 bp):
GCTGTAGGCAGGCTG
Left flanking sequence: Indices 164934 -- 165433
CGGGAAGGTCCATTTTGCAGGCTTTGTCTGCCGCGGTGCAGTGGAGCATTGAGGGGAAGAAAGAG
TCTTTCAGGACCTTACCGAAGATCAGGACCGGTAAGCCGGCCGGTATAGAGGGTTGAAGAGAGGG
TTCCTTAAGGTTGCCTTAGCTTAGCTGAGGGTTGACTTTGATTCGCTAAGGGTTGAAGAGGGTAA
ATGGAGGGTTGACGGGTGAAAAAGAGTCTTTCTAAGCGAATAAGTGTGACCTCCTTATAGAAACG
GGGTCTTCTTCGGCAGCTGAGCCGAGTACTGCCAGTGCTGCCTTACCAACTGCCCGGGCGCTTTG
GCTGGGTTGCCATGCCGAAGTTAGGGCGGAGAAGAACGGGGATAAACGCGACCTTCCAACAGCAG
AAGGCTAGGGCGGAATTAGAGGGCTAGGGCTATAAATTGATTCTTTAGCCGAGTTGTCTCTGAGA
CAACAAAGAGAAAGGTAGGTGCACAATGGGGTCCTGACTTTATAT
Right flanking sequence: Indices 165478 -- 165977
TAGAGCTCTGTTCGTTTCATCAGCTGGTCACTCTATGGCTGGTAAGACTGGTCACTCTATGGCTG
GTAAGACTGGTCACTCTATGGCTGGTAAGACTGGTCACTCTATGGCTGATAAGGCTTATAAGGCT
GGTCACTCTAGACAGCGTAAGATTTATAGTGTGGGCATTGGTGGGCTGGTAAACAACCTAAGCGT
TAGGCTGGTAATCATCCATTGCTTCACGCTAACTAATGCTTCTATCGCTAGCTGCTCTCACCAAT
AGCTATTCTCGAGAGCTCTCTAACCTACAAGCAAGCAACCTTACCGGCATACAGAGATTGATTGA
ACCAACCAAGCAAGCAGGAGCACCAGCCAATCATGCTTAGCTATTGTATCGTCTCCTACCACTCG
TACCACCAATAGCTAGTCCCAGAAACCAGAGCTAGTGCAAGCAAACGAACCTACCTACCTGAACT
GATTCCACTCAACCAACCAGCCAACCTAGCTAGCTACTACATACC
Found at i:165528 original size:24 final size:24
Alignment explanation
Indices: 165501--165595 Score: 181
Period size: 24 Copynumber: 4.0 Consensus size: 24
165491 GTTTCATCAG
165501 CTGGTCACTCTATGGCTGGTAAGA
1 CTGGTCACTCTATGGCTGGTAAGA
165525 CTGGTCACTCTATGGCTGGTAAGA
1 CTGGTCACTCTATGGCTGGTAAGA
165549 CTGGTCACTCTATGGCTGGTAAGA
1 CTGGTCACTCTATGGCTGGTAAGA
*
165573 CTGGTCACTCTATGGCTGATAAG
1 CTGGTCACTCTATGGCTGGTAAG
165596 GCTTATAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (24 bp):
CTGGTCACTCTATGGCTGGTAAGA
Left flanking sequence: Indices 165001 -- 165500
TTTCAGGACCTTACCGAAGATCAGGACCGGTAAGCCGGCCGGTATAGAGGGTTGAAGAGAGGGTT
CCTTAAGGTTGCCTTAGCTTAGCTGAGGGTTGACTTTGATTCGCTAAGGGTTGAAGAGGGTAAAT
GGAGGGTTGACGGGTGAAAAAGAGTCTTTCTAAGCGAATAAGTGTGACCTCCTTATAGAAACGGG
GTCTTCTTCGGCAGCTGAGCCGAGTACTGCCAGTGCTGCCTTACCAACTGCCCGGGCGCTTTGGC
TGGGTTGCCATGCCGAAGTTAGGGCGGAGAAGAACGGGGATAAACGCGACCTTCCAACAGCAGAA
GGCTAGGGCGGAATTAGAGGGCTAGGGCTATAAATTGATTCTTTAGCCGAGTTGTCTCTGAGACA
ACAAAGAGAAAGGTAGGTGCACAATGGGGTCCTGACTTTATATGCTGTAGGCGGGCTGGCTGTAG
GTAGGCTGGCTGTAGGTAGGCTTAGAGCTCTGTTCGTTTCATCAG
Right flanking sequence: Indices 165596 -- 166095
GCTTATAAGGCTGGTCACTCTAGACAGCGTAAGATTTATAGTGTGGGCATTGGTGGGCTGGTAAA
CAACCTAAGCGTTAGGCTGGTAATCATCCATTGCTTCACGCTAACTAATGCTTCTATCGCTAGCT
GCTCTCACCAATAGCTATTCTCGAGAGCTCTCTAACCTACAAGCAAGCAACCTTACCGGCATACA
GAGATTGATTGAACCAACCAAGCAAGCAGGAGCACCAGCCAATCATGCTTAGCTATTGTATCGTC
TCCTACCACTCGTACCACCAATAGCTAGTCCCAGAAACCAGAGCTAGTGCAAGCAAACGAACCTA
CCTACCTGAACTGATTCCACTCAACCAACCAGCCAACCTAGCTAGCTACTACATACCCTAACAAT
CAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGTCCCTAACAATCAACCCCGCTTATGG
ATAGTGGATAGATATACAATCTTGTCTTGTAAGGGCTTTCACGGC
Found at i:166051 original size:50 final size:50
Alignment explanation
Indices: 165976--166076 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
165966 CTACTACATA
165976 CCCTAACAATCAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGT
1 CCCTAACAATCAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGT
166026 CCCTAACAATCAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGT
1 CCCTAACAATCAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGT
166076 C
1 C
166077 TTGTAAGGGC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (50 bp):
CCCTAACAATCAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGT
Left flanking sequence: Indices 165476 -- 165975
CTTAGAGCTCTGTTCGTTTCATCAGCTGGTCACTCTATGGCTGGTAAGACTGGTCACTCTATGGC
TGGTAAGACTGGTCACTCTATGGCTGGTAAGACTGGTCACTCTATGGCTGATAAGGCTTATAAGG
CTGGTCACTCTAGACAGCGTAAGATTTATAGTGTGGGCATTGGTGGGCTGGTAAACAACCTAAGC
GTTAGGCTGGTAATCATCCATTGCTTCACGCTAACTAATGCTTCTATCGCTAGCTGCTCTCACCA
ATAGCTATTCTCGAGAGCTCTCTAACCTACAAGCAAGCAACCTTACCGGCATACAGAGATTGATT
GAACCAACCAAGCAAGCAGGAGCACCAGCCAATCATGCTTAGCTATTGTATCGTCTCCTACCACT
CGTACCACCAATAGCTAGTCCCAGAAACCAGAGCTAGTGCAAGCAAACGAACCTACCTACCTGAA
CTGATTCCACTCAACCAACCAGCCAACCTAGCTAGCTACTACATA
Right flanking sequence: Indices 166077 -- 166576
TTGTAAGGGCTTTCACGGCTCGTACTATCTGGCCTGATACCGGTTCAGTTAGGTATGGGCTGGTA
CGGTCCGGTTAGGTGAGGAGGAGAAATCACGACCAATTGCTTATCCAGTGAGGTATGGGCTTCTA
CCGGGCTTTACAGTGGGGGTTGTCAGGACCAGAGTCAAAACCCAGGGAGTCAGGACCAAGTATGA
GTCAGGACATTGCTTGCTCTTTTCACCTTCCCATAGTGCCCAAGAGTACGTGCTAGTCCATGCCA
AGTTGTCCCCGTGCCCAGTTGTCCGTACCCATAGTCCGTGACCAATAGTCCGTGTGTGCCAATTA
GTACGTGCCAGTCGATCATAGCCAATCAGAGCTGCCCGAAGGTGCTGATAGTCGCTAGTCGTTGA
ATGAAGGTTTCGATACCCAGTTGTCATTGACGGGAGTACTTGTATTTTCCCATTGTCGATAGCCG
CTAGTCATACTCCCTAGTCTTAGTACCCAGTCATACTCCCTAGTA
Found at i:166375 original size:13 final size:14
Alignment explanation
Indices: 166357--166390 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
166347 GTGCCCAGTT
*
166357 GTCCGT-ACCCATA
1 GTCCGTGACCAATA
166370 GTCCGTGACCAATA
1 GTCCGTGACCAATA
166384 GTCCGTG
1 GTCCGTG
166391 TGTGCCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (14 bp):
GTCCGTGACCAATA
Left flanking sequence: Indices 165857 -- 166356
CCTACCACTCGTACCACCAATAGCTAGTCCCAGAAACCAGAGCTAGTGCAAGCAAACGAACCTAC
CTACCTGAACTGATTCCACTCAACCAACCAGCCAACCTAGCTAGCTACTACATACCCTAACAATC
AACCCCGCTTATGGATAGTGGATAGATATACAATCTTGTCCCTAACAATCAACCCCGCTTATGGA
TAGTGGATAGATATACAATCTTGTCTTGTAAGGGCTTTCACGGCTCGTACTATCTGGCCTGATAC
CGGTTCAGTTAGGTATGGGCTGGTACGGTCCGGTTAGGTGAGGAGGAGAAATCACGACCAATTGC
TTATCCAGTGAGGTATGGGCTTCTACCGGGCTTTACAGTGGGGGTTGTCAGGACCAGAGTCAAAA
CCCAGGGAGTCAGGACCAAGTATGAGTCAGGACATTGCTTGCTCTTTTCACCTTCCCATAGTGCC
CAAGAGTACGTGCTAGTCCATGCCAAGTTGTCCCCGTGCCCAGTT
Right flanking sequence: Indices 166391 -- 166890
TGTGCCAATTAGTACGTGCCAGTCGATCATAGCCAATCAGAGCTGCCCGAAGGTGCTGATAGTCG
CTAGTCGTTGAATGAAGGTTTCGATACCCAGTTGTCATTGACGGGAGTACTTGTATTTTCCCATT
GTCGATAGCCGCTAGTCATACTCCCTAGTCTTAGTACCCAGTCATACTCCCTAGTATCTTAGCCA
GTCGTCATTGCCGAGCTCAATACTACCACTTATAAGCAACAGGTGAATAGTGCTGACTTTCCCTA
ATCTAATCATAATTGAACATATCGTTTCTATCGTTCCTACTCTTTCCCACACCTGGCCTAACCTT
GATATTCAATAAGTTGCCTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTCACTCACAC
GCTCACACTCAAAAACTAACGCTAGGTTCAGGAACAGCTAGGTTCGGAAACATAAAGTCAGTAAA
GTATGGTGTGGCTAGTAAAGCCGAGAAGATCGGTACGAAACGCTA
Found at i:166550 original size:13 final size:13
Alignment explanation
Indices: 166532--166575 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
166522 TCGATAGCCG
166532 CTAGTCATACTCC
1 CTAGTCATACTCC
* *
166545 CTAGTCTTAGTACC
1 CTAGTCATACT-CC
166559 C-AGTCATACTCC
1 CTAGTCATACTCC
166571 CTAGT
1 CTAGT
166576 ATCTTAGCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 3 0.12
13 19 0.76
14 3 0.12
ACGTcount: A:0.23, C:0.34, G:0.11, T:0.32
Consensus pattern (13 bp):
CTAGTCATACTCC
Left flanking sequence: Indices 166032 -- 166531
CAATCAACCCCGCTTATGGATAGTGGATAGATATACAATCTTGTCTTGTAAGGGCTTTCACGGCT
CGTACTATCTGGCCTGATACCGGTTCAGTTAGGTATGGGCTGGTACGGTCCGGTTAGGTGAGGAG
GAGAAATCACGACCAATTGCTTATCCAGTGAGGTATGGGCTTCTACCGGGCTTTACAGTGGGGGT
TGTCAGGACCAGAGTCAAAACCCAGGGAGTCAGGACCAAGTATGAGTCAGGACATTGCTTGCTCT
TTTCACCTTCCCATAGTGCCCAAGAGTACGTGCTAGTCCATGCCAAGTTGTCCCCGTGCCCAGTT
GTCCGTACCCATAGTCCGTGACCAATAGTCCGTGTGTGCCAATTAGTACGTGCCAGTCGATCATA
GCCAATCAGAGCTGCCCGAAGGTGCTGATAGTCGCTAGTCGTTGAATGAAGGTTTCGATACCCAG
TTGTCATTGACGGGAGTACTTGTATTTTCCCATTGTCGATAGCCG
Right flanking sequence: Indices 166576 -- 167075
ATCTTAGCCAGTCGTCATTGCCGAGCTCAATACTACCACTTATAAGCAACAGGTGAATAGTGCTG
ACTTTCCCTAATCTAATCATAATTGAACATATCGTTTCTATCGTTCCTACTCTTTCCCACACCTG
GCCTAACCTTGATATTCAATAAGTTGCCTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCT
TCACTCACACGCTCACACTCAAAAACTAACGCTAGGTTCAGGAACAGCTAGGTTCGGAAACATAA
AGTCAGTAAAGTATGGTGTGGCTAGTAAAGCCGAGAAGATCGGTACGAAACGCTAGGTTCGGGAA
CAGCTATGACTGGCTGGCTTTATGGCTTTGTTATGTGAGTGATAGAGTCTTCCTTCTAAGCTTCT
TCCTTAATGTATGAGGTAGATGAGGTAGAAGCTTCTCTTCCCTACCCTCTAAGCTGAAGAATCTT
CCTACTATCTAGCTTATTAGATAAACCTTATTAGAGTAGCTTAAT
Found at i:167309 original size:21 final size:21
Alignment explanation
Indices: 167284--167329 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
167274 AAGTGGCCCC
167284 AAAACTACTTGAAAATGCCAT
1 AAAACTACTTGAAAATGCCAT
167305 AAAACTACTTGAAAATGCCAT
1 AAAACTACTTGAAAATGCCAT
167326 AAAA
1 AAAA
167330 AAAGGTCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.52, C:0.17, G:0.09, T:0.22
Consensus pattern (21 bp):
AAAACTACTTGAAAATGCCAT
Left flanking sequence: Indices 166784 -- 167283
CACACTCAAAAACTAACGCTAGGTTCAGGAACAGCTAGGTTCGGAAACATAAAGTCAGTAAAGTA
TGGTGTGGCTAGTAAAGCCGAGAAGATCGGTACGAAACGCTAGGTTCGGGAACAGCTATGACTGG
CTGGCTTTATGGCTTTGTTATGTGAGTGATAGAGTCTTCCTTCTAAGCTTCTTCCTTAATGTATG
AGGTAGATGAGGTAGAAGCTTCTCTTCCCTACCCTCTAAGCTGAAGAATCTTCCTACTATCTAGC
TTATTAGATAAACCTTATTAGAGTAGCTTAATAAGTATGAGGATTAGGGGGGATGAATCTACCTT
TCCTACCCTACTTTCTGAGATAAGCTGAATGTATGAGGATGAGGGAAACCCTTCTTATCTTCCCT
TAATGAGTAGCTTAATTAGGGAGGTTTAGCTAAAGGTATGGAATGAAATGACGGAAAACTACCGC
AACATATATAATATAATATGCCATTTCCCGAGTGAAAGTGGCCCC
Right flanking sequence: Indices 167330 -- 167829
AAAGGTCATAAATTCCATTCAATTTACTTATTGGGTGGGGGGGCCTCGGGGATTGGGGTGGGTGG
GTAAATAGTGGTCGAGCCTGCTTGCGCATCCTCACCATATGAATAGTGAGTCCCTCACCATACCC
GATTAACCCTGAAGGAGGAATGAGGTCAAAGTTCTCGCCTCTTATCAGGCAAGAGAAAGGTACTT
CAATATAATATAAGGGGGCTCAGGTCCGGAATATTATGACCTTCACCTTGGTCCGATAAACCCTG
AGTTACGTGGGTGGTAGGGAAAGGTAAACAGGGAGGGCCCTTCTATTATATTGAAGGCTGGGACA
AGTTTGCTAGTTCACTCTGCTCAGGTCCTTCAAGCAGGGGAAACCCTCCTCACAGCTTAGGTAGG
GTTGGTTCGACCATTTTCCAGGTCCTGACAAAGGCTTTGGTAAGGTTATGAAAGATCCGCCCACC
CTATGCTAAAAGGTCCGGGTATGCCTGAACTTACTCGGGTAAAGA
Found at i:172392 original size:25 final size:26
Alignment explanation
Indices: 172363--172483 Score: 111
Period size: 25 Copynumber: 4.7 Consensus size: 26
172353 CTCTCCCTCT
*
172363 CCCTTAAGGTGCTCGACTGTTAAGGA
1 CCCTTAAGGTGCTCGACTGATAAGGA
*
172389 -CCTTTAGGTGCTCGACTGATAAGGA
1 CCCTTAAGGTGCTCGACTGATAAGGA
** ** * *
172414 TGCGCAAGCATGCTCGACTGTTAAGGA
1 CCCTTAAG-GTGCTCGACTGATAAGGA
* *
172441 CCCTTTAGGGGGCTCGACTGATAAGGA
1 CCC-TTAAGGTGCTCGACTGATAAGGA
*
172468 -CCTTTAGGTGCTCGAC
1 CCCTTAAGGTGCTCGAC
172484 CCAGGGTTGA
Statistics
Matches: 73, Mismatches: 19, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
25 34 0.47
26 5 0.07
27 32 0.44
28 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (26 bp):
CCCTTAAGGTGCTCGACTGATAAGGA
Left flanking sequence: Indices 171863 -- 172362
TATGGCTGGATCGAATTGAAATGAGTTCTTCCCCTCAATCAAAGAGCTAGAAGGGACTTCAGATT
TATTCCCCTCAATCGATCAATCACTCAGGACTGAAACTTGTCCGTGATTCCAGTTATGAATGAGA
TATGTCATTATGCATTCATTCGTTATATACGTAATTACGCTTACGCAGATCATGCATATATTATA
TATGTAATTATGCTTTTTCTTGCTTGCTACAAGAAGGTGGGGCTCGAGGCACTTCGTTAGGCTGT
AAAAAGGTGAACCTCCGCCACGGTCAAATGGCCAATCTCGGAGGGTGAAGTAATGTGCGAGGAAG
GACCCGGTAGGGGGAAGGAAACCGCCATTCTTCTCTTGTTTGCTTGTGCTCCGGCCCTTGCTTGA
CGTTAGGAAAGCAAGGGCCGGCCATCCTCCTATCCCTGAGCCCGGGAACTCCACTATATCTTCCT
CTCCTTAGATTGGGAGCCTGCTTACGCATCCTCTCCTCTCCCTCT
Right flanking sequence: Indices 172484 -- 172983
CCAGGGTTGACTTATTGGGTGGGGCAATAAGTCAACTGACTTATTGGGTGGGGCAATAAGTAAAC
CCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCG
ACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGA
GAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGAGGAGAGGATGCGG
AGCACGCTCGACCAGCGGGAGAGGATGCGGAGCACGCTCGACCAGCGGGAGAGGTACGTTAGTGA
CTCGACTGATAAGGAGAGGAGGCGGAGGTTTTGAAGCGTAATGTTCCGATATGGGCATATGTCAT
TCATTCATGCATAATGACATATATAATATATGCATTTTCTGGGTTCGAGGAGAGGGGGCTCGACT
GATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCAT
Found at i:172455 original size:27 final size:25
Alignment explanation
Indices: 172424--172483 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 25
172414 TGCGCAAGCA
*
172424 TGCTCGACTGTTAAGGACCCTTTAGGG
1 TGCTCGACTGATAAGGA-CCTTTA-GG
*
172451 GGCTCGACTGATAAGGACCTTTAGG
1 TGCTCGACTGATAAGGACCTTTAGG
172476 TGCTCGAC
1 TGCTCGAC
172484 CCAGGGTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 9 0.30
26 6 0.20
27 15 0.50
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (25 bp):
TGCTCGACTGATAAGGACCTTTAGG
Left flanking sequence: Indices 171924 -- 172423
GATTTATTCCCCTCAATCGATCAATCACTCAGGACTGAAACTTGTCCGTGATTCCAGTTATGAAT
GAGATATGTCATTATGCATTCATTCGTTATATACGTAATTACGCTTACGCAGATCATGCATATAT
TATATATGTAATTATGCTTTTTCTTGCTTGCTACAAGAAGGTGGGGCTCGAGGCACTTCGTTAGG
CTGTAAAAAGGTGAACCTCCGCCACGGTCAAATGGCCAATCTCGGAGGGTGAAGTAATGTGCGAG
GAAGGACCCGGTAGGGGGAAGGAAACCGCCATTCTTCTCTTGTTTGCTTGTGCTCCGGCCCTTGC
TTGACGTTAGGAAAGCAAGGGCCGGCCATCCTCCTATCCCTGAGCCCGGGAACTCCACTATATCT
TCCTCTCCTTAGATTGGGAGCCTGCTTACGCATCCTCTCCTCTCCCTCTCCCTTAAGGTGCTCGA
CTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCA
Right flanking sequence: Indices 172484 -- 172983
CCAGGGTTGACTTATTGGGTGGGGCAATAAGTCAACTGACTTATTGGGTGGGGCAATAAGTAAAC
CCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCG
ACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGA
GAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGAGGAGAGGATGCGG
AGCACGCTCGACCAGCGGGAGAGGATGCGGAGCACGCTCGACCAGCGGGAGAGGTACGTTAGTGA
CTCGACTGATAAGGAGAGGAGGCGGAGGTTTTGAAGCGTAATGTTCCGATATGGGCATATGTCAT
TCATTCATGCATAATGACATATATAATATATGCATTTTCTGGGTTCGAGGAGAGGGGGCTCGACT
GATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCAT
Found at i:172648 original size:27 final size:27
Alignment explanation
Indices: 172631--172688 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
172621 AGGACCCTTT
* *
172631 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
172658 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
172685 AGGG
1 AGGG
172689 CCGCCATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.50, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 172131 -- 172630
GAACCTCCGCCACGGTCAAATGGCCAATCTCGGAGGGTGAAGTAATGTGCGAGGAAGGACCCGGT
AGGGGGAAGGAAACCGCCATTCTTCTCTTGTTTGCTTGTGCTCCGGCCCTTGCTTGACGTTAGGA
AAGCAAGGGCCGGCCATCCTCCTATCCCTGAGCCCGGGAACTCCACTATATCTTCCTCTCCTTAG
ATTGGGAGCCTGCTTACGCATCCTCTCCTCTCCCTCTCCCTTAAGGTGCTCGACTGTTAAGGACC
TTTAGGTGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTGTTAAGGACCCTTTAGGGGGCTC
GACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCAATAAGTCAACT
GACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCTCGACTGTTAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 172689 -- 173188
CCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGAGGAGAGGATGCGGAGCACGCTCG
ACCAGCGGGAGAGGATGCGGAGCACGCTCGACCAGCGGGAGAGGTACGTTAGTGACTCGACTGAT
AAGGAGAGGAGGCGGAGGTTTTGAAGCGTAATGTTCCGATATGGGCATATGTCATTCATTCATGC
ATAATGACATATATAATATATGCATTTTCTGGGTTCGAGGAGAGGGGGCTCGACTGATAAGGAGA
GGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGAGAGGAGAGAAAGATGT
GAAAACCTCCGCCAAAGCATATATTCTCTATGTCATTATGCATTCATTCATTATATATGTCATTA
CGGCAGCATCTGAATCTCTATTTTATGAAGCCGCAACTACCACATGCTCATATATAACTAACTAC
GCCGTATCTAGCAACCAAGCTACTTACGGAGGCGGCTTATCCACC
Found at i:172702 original size:20 final size:20
Alignment explanation
Indices: 172677--172727 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
172667 GACTGATAAG
172677 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
172697 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
172717 GAGAGGAGAGG
1 GAGAGGAGAGG
172728 AGAGGAGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.49, T:0.04
Consensus pattern (20 bp):
GAGAGGAGAGGGCCGCCATC
Left flanking sequence: Indices 172177 -- 172676
GTGCGAGGAAGGACCCGGTAGGGGGAAGGAAACCGCCATTCTTCTCTTGTTTGCTTGTGCTCCGG
CCCTTGCTTGACGTTAGGAAAGCAAGGGCCGGCCATCCTCCTATCCCTGAGCCCGGGAACTCCAC
TATATCTTCCTCTCCTTAGATTGGGAGCCTGCTTACGCATCCTCTCCTCTCCCTCTCCCTTAAGG
TGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCATGCTCGACTGTTA
AGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGG
GTGGGGCAATAAGTCAACTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTT
TAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTA
GGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAG
Right flanking sequence: Indices 172728 -- 173227
AGAGGAGAGGATGCGGAGCACGCTCGACCAGCGGGAGAGGATGCGGAGCACGCTCGACCAGCGGG
AGAGGTACGTTAGTGACTCGACTGATAAGGAGAGGAGGCGGAGGTTTTGAAGCGTAATGTTCCGA
TATGGGCATATGTCATTCATTCATGCATAATGACATATATAATATATGCATTTTCTGGGTTCGAG
GAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCATCGAG
AGGAGAGGGAGAGGAGAGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTCTATGTCATTAT
GCATTCATTCATTATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAAGCCGCAACTA
CCACATGCTCATATATAACTAACTACGCCGTATCTAGCAACCAAGCTACTTACGGAGGCGGCTTA
TCCACCTTCTTAGAATGTTTATCCCTACGGCGCTGCTCCCTTCGT
Found at i:172765 original size:30 final size:30
Alignment explanation
Indices: 172731--172797 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
172721 GGAGAGGAGA
172731 GGAGAGGATGCGGAGCACGCTCGACCAGCG
1 GGAGAGGATGCGGAGCACGCTCGACCAGCG
172761 GGAGAGGATGCGGAGCACGCTCGACCAGCG
1 GGAGAGGATGCGGAGCACGCTCGACCAGCG
172791 GGAGAGG
1 GGAGAGG
172798 TACGTTAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.46, T:0.06
Consensus pattern (30 bp):
GGAGAGGATGCGGAGCACGCTCGACCAGCG
Left flanking sequence: Indices 172231 -- 172730
TTGTGCTCCGGCCCTTGCTTGACGTTAGGAAAGCAAGGGCCGGCCATCCTCCTATCCCTGAGCCC
GGGAACTCCACTATATCTTCCTCTCCTTAGATTGGGAGCCTGCTTACGCATCCTCTCCTCTCCCT
CTCCCTTAAGGTGCTCGACTGTTAAGGACCTTTAGGTGCTCGACTGATAAGGATGCGCAAGCATG
CTCGACTGTTAAGGACCCTTTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGT
TGACTTATTGGGTGGGGCAATAAGTCAACTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAG
GAGAGGACCTTTAGGTGCTCGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATA
AGGACCCTTTAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGA
GGGCCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGAGA
Right flanking sequence: Indices 172798 -- 173297
TACGTTAGTGACTCGACTGATAAGGAGAGGAGGCGGAGGTTTTGAAGCGTAATGTTCCGATATGG
GCATATGTCATTCATTCATGCATAATGACATATATAATATATGCATTTTCTGGGTTCGAGGAGAG
GGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGCCGCCATCGAGAGGAG
AGGGAGAGGAGAGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTCTATGTCATTATGCATT
CATTCATTATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAAGCCGCAACTACCACA
TGCTCATATATAACTAACTACGCCGTATCTAGCAACCAAGCTACTTACGGAGGCGGCTTATCCAC
CTTCTTAGAATGTTTATCCCTACGGCGCTGCTCCCTTCGTAGTTTCTTATCAGACTTCACCTTAG
AACCATGTGTAGGGTGCTTGAACTGAGGAGGTCTTTTCATTGGAG
Found at i:172970 original size:20 final size:20
Alignment explanation
Indices: 172945--172996 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
172935 GACTGATAAG
172945 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
172965 GAGAGGAGAGGGCCGCCATC
1 GAGAGGAGAGGGCCGCCATC
172985 GAGAGGAGAGGG
1 GAGAGGAGAGGG
172997 AGAGGAGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.27, C:0.19, G:0.50, T:0.04
Consensus pattern (20 bp):
GAGAGGAGAGGGCCGCCATC
Left flanking sequence: Indices 172445 -- 172944
TTAGGGGGCTCGACTGATAAGGACCTTTAGGTGCTCGACCCAGGGTTGACTTATTGGGTGGGGCA
ATAAGTCAACTGACTTATTGGGTGGGGCAATAAGTAAACCCAAGAGGAGAGGACCTTTAGGTGCT
CGACTGTTAAGGACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTC
GACTGATAAGGAGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAG
AGGGCCGCCATCGAGAGGAGAGGAGAGGAGAGGATGCGGAGCACGCTCGACCAGCGGGAGAGGAT
GCGGAGCACGCTCGACCAGCGGGAGAGGTACGTTAGTGACTCGACTGATAAGGAGAGGAGGCGGA
GGTTTTGAAGCGTAATGTTCCGATATGGGCATATGTCATTCATTCATGCATAATGACATATATAA
TATATGCATTTTCTGGGTTCGAGGAGAGGGGGCTCGACTGATAAG
Right flanking sequence: Indices 172997 -- 173496
AGAGGAGAGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTCTATGTCATTATGCATTCATT
CATTATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAAGCCGCAACTACCACATGCT
CATATATAACTAACTACGCCGTATCTAGCAACCAAGCTACTTACGGAGGCGGCTTATCCACCTTC
TTAGAATGTTTATCCCTACGGCGCTGCTCCCTTCGTAGTTTCTTATCAGACTTCACCTTAGAACC
ATGTGTAGGGTGCTTGAACTGAGGAGGTCTTTTCATTGGAGATTCAGTCATAGGGCTCCTGACTG
GTGCCTTCAGCTCCTGTTTAGACTCAAGACGAGCAATCCGCTCCAGCAGCTCCTGATTCATCTTA
ATCAGACGAGCAATCTGCTCCTGCAGCTCCTGATTCATCTTAATAAGACTCTCAATCTGCTCCTG
TTTCATCTGATCCTGATCCTGCAGCTCCTCATTCATCTCAATCAA
Found at i:173462 original size:42 final size:42
Alignment explanation
Indices: 173347--173451 Score: 156
Period size: 42 Copynumber: 2.5 Consensus size: 42
173337 GTTTAGACTC
* *
173347 AAGACGAGCAATCCGCTCCAGCAGCTCCTGATTCATCTTAAT
1 AAGACGAGCAATCTGCTCCTGCAGCTCCTGATTCATCTTAAT
*
173389 CAGACGAGCAATCTGCTCCTGCAGCTCCTGATTCATCTTAAT
1 AAGACGAGCAATCTGCTCCTGCAGCTCCTGATTCATCTTAAT
***
173431 AAGACTCTCAATCTGCTCCTG
1 AAGACGAGCAATCTGCTCCTG
173452 TTTCATCTGA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (42 bp):
AAGACGAGCAATCTGCTCCTGCAGCTCCTGATTCATCTTAAT
Left flanking sequence: Indices 172847 -- 173346
TAATGTTCCGATATGGGCATATGTCATTCATTCATGCATAATGACATATATAATATATGCATTTT
CTGGGTTCGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGG
CCGCCATCGAGAGGAGAGGGAGAGGAGAGAAAGATGTGAAAACCTCCGCCAAAGCATATATTCTC
TATGTCATTATGCATTCATTCATTATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGA
AGCCGCAACTACCACATGCTCATATATAACTAACTACGCCGTATCTAGCAACCAAGCTACTTACG
GAGGCGGCTTATCCACCTTCTTAGAATGTTTATCCCTACGGCGCTGCTCCCTTCGTAGTTTCTTA
TCAGACTTCACCTTAGAACCATGTGTAGGGTGCTTGAACTGAGGAGGTCTTTTCATTGGAGATTC
AGTCATAGGGCTCCTGACTGGTGCCTTCAGCTCCTGTTTAGACTC
Right flanking sequence: Indices 173452 -- 173951
TTTCATCTGATCCTGATCCTGCAGCTCCTCATTCATCTCAATCAACCTATTAATCTGAGAATGCT
GCTCCTCAGTCAGCTTAGCCAGACTATCAATCTGCTCCTGTTTCATCTGATTACTCTTCATTATA
TTATAAATCATCTGATCCTTCTCATTATTACTCTTCATGAGATTATCAATAATATCATCCTTCTC
TTGCATTTTGAGGGAATAAAATAGAATATCCGTTTCGTCTTGGCAGGAAAGGTGAGCAAAGGAAA
GAGAAGCAGGGCAGGTACCCATTATCAATCATCGATACGACCCATCTCCACATTCATAGGCAACG
GACAAGAACAAGGCAGGGATGGAGAGACAGAATGAAGCTACCGGGCGAAGGATGCTTAGCCAGAA
GTTGATTCAAGAAGATGGGAGTTAGCCAATTCTACTCGCTACCGGTCTTGGTAATGGTGACATTA
TATCACAGCTTGAAGACCGGGCGGGGGATGACTGAATGAATGCCG
Found at i:173613 original size:42 final size:42
Alignment explanation
Indices: 173566--173646 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
173556 GTTTCATCTG
* * * * *
173566 ATTACTCTTCATTATATTATAAATCATCTGATCCTTCTCATT
1 ATTACTCTTCATGAGATTATAAATAATATCATCCTTCTCATT
*
173608 ATTACTCTTCATGAGATTATCAATAATATCATCCTTCTC
1 ATTACTCTTCATGAGATTATAAATAATATCATCCTTCTC
173647 TTGCATTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.30, C:0.22, G:0.04, T:0.44
Consensus pattern (42 bp):
ATTACTCTTCATGAGATTATAAATAATATCATCCTTCTCATT
Left flanking sequence: Indices 173066 -- 173565
ATATATGTCATTACGGCAGCATCTGAATCTCTATTTTATGAAGCCGCAACTACCACATGCTCATA
TATAACTAACTACGCCGTATCTAGCAACCAAGCTACTTACGGAGGCGGCTTATCCACCTTCTTAG
AATGTTTATCCCTACGGCGCTGCTCCCTTCGTAGTTTCTTATCAGACTTCACCTTAGAACCATGT
GTAGGGTGCTTGAACTGAGGAGGTCTTTTCATTGGAGATTCAGTCATAGGGCTCCTGACTGGTGC
CTTCAGCTCCTGTTTAGACTCAAGACGAGCAATCCGCTCCAGCAGCTCCTGATTCATCTTAATCA
GACGAGCAATCTGCTCCTGCAGCTCCTGATTCATCTTAATAAGACTCTCAATCTGCTCCTGTTTC
ATCTGATCCTGATCCTGCAGCTCCTCATTCATCTCAATCAACCTATTAATCTGAGAATGCTGCTC
CTCAGTCAGCTTAGCCAGACTATCAATCTGCTCCTGTTTCATCTG
Right flanking sequence: Indices 173647 -- 174146
TTGCATTTTGAGGGAATAAAATAGAATATCCGTTTCGTCTTGGCAGGAAAGGTGAGCAAAGGAAA
GAGAAGCAGGGCAGGTACCCATTATCAATCATCGATACGACCCATCTCCACATTCATAGGCAACG
GACAAGAACAAGGCAGGGATGGAGAGACAGAATGAAGCTACCGGGCGAAGGATGCTTAGCCAGAA
GTTGATTCAAGAAGATGGGAGTTAGCCAATTCTACTCGCTACCGGTCTTGGTAATGGTGACATTA
TATCACAGCTTGAAGACCGGGCGGGGGATGACTGAATGAATGCCGGATAACACTCCTTCGCCCCC
AAGGGATTTGGATGGAGCCGAGCCGAAGCTTCTTAACTCTGCCACCCGCACCTAACACCCAAGAT
CGAGCACCAGAGCAGCTCATAGCAACGTACCCAAAATCATATTGATGTGATGAGTTCATATTCTC
ACATTCCCGCATTCCCCATTCAGTTCGCATTATACCATTCAGTTC
Found at i:174141 original size:19 final size:19
Alignment explanation
Indices: 174117--174160 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
174107 CCCGCATTCC
174117 CCATTCAGTTCGCATTATA
1 CCATTCAGTTCGCATTATA
174136 CCATTCAGTTCGCATTATA
1 CCATTCAGTTCGCATTATA
174155 CCATTC
1 CCATTC
174161 TTCTGCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.09, T:0.36
Consensus pattern (19 bp):
CCATTCAGTTCGCATTATA
Left flanking sequence: Indices 173617 -- 174116
CATGAGATTATCAATAATATCATCCTTCTCTTGCATTTTGAGGGAATAAAATAGAATATCCGTTT
CGTCTTGGCAGGAAAGGTGAGCAAAGGAAAGAGAAGCAGGGCAGGTACCCATTATCAATCATCGA
TACGACCCATCTCCACATTCATAGGCAACGGACAAGAACAAGGCAGGGATGGAGAGACAGAATGA
AGCTACCGGGCGAAGGATGCTTAGCCAGAAGTTGATTCAAGAAGATGGGAGTTAGCCAATTCTAC
TCGCTACCGGTCTTGGTAATGGTGACATTATATCACAGCTTGAAGACCGGGCGGGGGATGACTGA
ATGAATGCCGGATAACACTCCTTCGCCCCCAAGGGATTTGGATGGAGCCGAGCCGAAGCTTCTTA
ACTCTGCCACCCGCACCTAACACCCAAGATCGAGCACCAGAGCAGCTCATAGCAACGTACCCAAA
ATCATATTGATGTGATGAGTTCATATTCTCACATTCCCGCATTCC
Right flanking sequence: Indices 174161 -- 174660
TTCTGCCATTCCCGCATCCCCACACGTCAACCAGGACCCAGTACGCATAAGGAAGGTGGATACCG
CCCAGGCCACGTCTTCCAAGCAAGGAAACACACAGTACACGTCTTCCAAGTGCACCATATGAATA
GTGAGTGACCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCC
CTAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCT
ACCGGTCCTCACCATATGAATAGTGAGTGACTCCGTCCCTATAAAGTAGTAGGGGCGATGGCGGC
CTTGACAGTCGAGTGTGCTAACGCACCCTGGTGTTTATTTCGTTACATAAGTCATGGCAAGGCCC
TGTCACGTTATAGGCGAACCTACTTGAAGAGTAAGGCCCCCCTGATTCTGGGCCTGAAAGGTCTT
ATCAGGTCCTGGGTCAACCCAGCCAGTAAGGCCCTGATCAACCCT
Found at i:174336 original size:27 final size:27
Alignment explanation
Indices: 174299--174357 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
174289 TAGTGAGTGA
174299 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
174326 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
174353 CCCCT
1 CCCCT
174358 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 173799 -- 174298
AGAGACAGAATGAAGCTACCGGGCGAAGGATGCTTAGCCAGAAGTTGATTCAAGAAGATGGGAGT
TAGCCAATTCTACTCGCTACCGGTCTTGGTAATGGTGACATTATATCACAGCTTGAAGACCGGGC
GGGGGATGACTGAATGAATGCCGGATAACACTCCTTCGCCCCCAAGGGATTTGGATGGAGCCGAG
CCGAAGCTTCTTAACTCTGCCACCCGCACCTAACACCCAAGATCGAGCACCAGAGCAGCTCATAG
CAACGTACCCAAAATCATATTGATGTGATGAGTTCATATTCTCACATTCCCGCATTCCCCATTCA
GTTCGCATTATACCATTCAGTTCGCATTATACCATTCTTCTGCCATTCCCGCATCCCCACACGTC
AACCAGGACCCAGTACGCATAAGGAAGGTGGATACCGCCCAGGCCACGTCTTCCAAGCAAGGAAA
CACACAGTACACGTCTTCCAAGTGCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 174358 -- 174857
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGACTCCGTCCCTATAAAGTAGTAGGGGCGATGGCGGCCT
TGACAGTCGAGTGTGCTAACGCACCCTGGTGTTTATTTCGTTACATAAGTCATGGCAAGGCCCTG
TCACGTTATAGGCGAACCTACTTGAAGAGTAAGGCCCCCCTGATTCTGGGCCTGAAAGGTCTTAT
CAGGTCCTGGGTCAACCCAGCCAGTAAGGCCCTGATCAACCCTCTCATTTTTTTCACCCGGTCCT
CTCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAG
GTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTGTAGCA
TCCTTATGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCTGCT
Found at i:174367 original size:27 final size:27
Alignment explanation
Indices: 174309--174379 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
174299 CCCCTCTCCT
*** *
174309 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
174336 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
174363 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
174380 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 173809 -- 174308
TGAAGCTACCGGGCGAAGGATGCTTAGCCAGAAGTTGATTCAAGAAGATGGGAGTTAGCCAATTC
TACTCGCTACCGGTCTTGGTAATGGTGACATTATATCACAGCTTGAAGACCGGGCGGGGGATGAC
TGAATGAATGCCGGATAACACTCCTTCGCCCCCAAGGGATTTGGATGGAGCCGAGCCGAAGCTTC
TTAACTCTGCCACCCGCACCTAACACCCAAGATCGAGCACCAGAGCAGCTCATAGCAACGTACCC
AAAATCATATTGATGTGATGAGTTCATATTCTCACATTCCCGCATTCCCCATTCAGTTCGCATTA
TACCATTCAGTTCGCATTATACCATTCTTCTGCCATTCCCGCATCCCCACACGTCAACCAGGACC
CAGTACGCATAAGGAAGGTGGATACCGCCCAGGCCACGTCTTCCAAGCAAGGAAACACACAGTAC
ACGTCTTCCAAGTGCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 174380 -- 174879
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGACTCCGTCCCTATAAAGTAGTAGGGGCGATGGCGGCCTTGACAGTCGAGTGTGCTAACGC
ACCCTGGTGTTTATTTCGTTACATAAGTCATGGCAAGGCCCTGTCACGTTATAGGCGAACCTACT
TGAAGAGTAAGGCCCCCCTGATTCTGGGCCTGAAAGGTCTTATCAGGTCCTGGGTCAACCCAGCC
AGTAAGGCCCTGATCAACCCTCTCATTTTTTTCACCCGGTCCTCTCCTCTCCCTCTCCCTCTCCC
TCTCCCTCTCCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGT
CGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTGTAGCATCCTTATGGTCGAGCACCTAAA
GGTCCTTAACAGTCGAGCCTGCTGTAGCATCCTTACTGGGCCCTT
Found at i:174696 original size:6 final size:6
Alignment explanation
Indices: 174680--174728 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
174670 TTCACCCGGT
174680 CCTCT- CCTCTC CCTCTC CCTCTC CCTCTC CCTCT- CCTCTC CCTCTC
1 CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC
174726 CCT
1 CCT
174729 TAAGGTCGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.24
6 32 0.76
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
CCTCTC
Left flanking sequence: Indices 174180 -- 174679
CCACACGTCAACCAGGACCCAGTACGCATAAGGAAGGTGGATACCGCCCAGGCCACGTCTTCCAA
GCAAGGAAACACACAGTACACGTCTTCCAAGTGCACCATATGAATAGTGAGTGACCCCTCTCCTC
TCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGT
CGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGA
ATAGTGAGTGACTCCGTCCCTATAAAGTAGTAGGGGCGATGGCGGCCTTGACAGTCGAGTGTGCT
AACGCACCCTGGTGTTTATTTCGTTACATAAGTCATGGCAAGGCCCTGTCACGTTATAGGCGAAC
CTACTTGAAGAGTAAGGCCCCCCTGATTCTGGGCCTGAAAGGTCTTATCAGGTCCTGGGTCAACC
CAGCCAGTAAGGCCCTGATCAACCCTCTCATTTTTTTCACCCGGT
Right flanking sequence: Indices 174729 -- 175228
TAAGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATC
AGTCGAGCCTGCTGTAGCATCCTTATGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCTGCTG
TAGCATCCTTACTGGGCCCTTGATTTCTTCCCCTCAAAGAGCTCGAAGAGTTGGTCCTTCCTGCG
CCGGTCAACCCCTTCTAAGTAAGGTAAGGTCCTGCGCGTATTTTAGGGGAAGAAATGGCCTGCGC
CGGCCTTATTTGGTTGGTTTGGTCCTGCGCCGGTCCTGCGCCGGCCTTATTTTGTCGCCGGCCTT
ACGAAAGATAAGGAGAACCTTTCGCTACGGGAAAGGGATAACCCTTCGCTATGCTCAAGGGAGAT
CCTTCCCTTCGCTATGCTCGCTCAAGCCTACACAAATTCCCACCTACACCAATTATGGAAGAACC
GGGATAACGGTGTTATGTAGAATTGTACGAACACTGTTAGTAAAT
Found at i:174727 original size:23 final size:23
Alignment explanation
Indices: 174680--174728 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
174670 TTCACCCGGT
174680 CCTCTCCTCTCCCTCTCCCTCTC
1 CCTCTCCTCTCCCTCTCCCTCTC
174703 CCTCTCC-CTCTCCTCTCCCTCTC
1 CCTCTCCTCTC-CCTCTCCCTCTC
174726 CCT
1 CCT
174729 TAAGGTCGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (23 bp):
CCTCTCCTCTCCCTCTCCCTCTC
Left flanking sequence: Indices 174180 -- 174679
CCACACGTCAACCAGGACCCAGTACGCATAAGGAAGGTGGATACCGCCCAGGCCACGTCTTCCAA
GCAAGGAAACACACAGTACACGTCTTCCAAGTGCACCATATGAATAGTGAGTGACCCCTCTCCTC
TCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGT
CGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGA
ATAGTGAGTGACTCCGTCCCTATAAAGTAGTAGGGGCGATGGCGGCCTTGACAGTCGAGTGTGCT
AACGCACCCTGGTGTTTATTTCGTTACATAAGTCATGGCAAGGCCCTGTCACGTTATAGGCGAAC
CTACTTGAAGAGTAAGGCCCCCCTGATTCTGGGCCTGAAAGGTCTTATCAGGTCCTGGGTCAACC
CAGCCAGTAAGGCCCTGATCAACCCTCTCATTTTTTTCACCCGGT
Right flanking sequence: Indices 174729 -- 175228
TAAGGTCGAGCACCTAAAGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATC
AGTCGAGCCTGCTGTAGCATCCTTATGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCCTGCTG
TAGCATCCTTACTGGGCCCTTGATTTCTTCCCCTCAAAGAGCTCGAAGAGTTGGTCCTTCCTGCG
CCGGTCAACCCCTTCTAAGTAAGGTAAGGTCCTGCGCGTATTTTAGGGGAAGAAATGGCCTGCGC
CGGCCTTATTTGGTTGGTTTGGTCCTGCGCCGGTCCTGCGCCGGCCTTATTTTGTCGCCGGCCTT
ACGAAAGATAAGGAGAACCTTTCGCTACGGGAAAGGGATAACCCTTCGCTATGCTCAAGGGAGAT
CCTTCCCTTCGCTATGCTCGCTCAAGCCTACACAAATTCCCACCTACACCAATTATGGAAGAACC
GGGATAACGGTGTTATGTAGAATTGTACGAACACTGTTAGTAAAT
Found at i:174797 original size:27 final size:27
Alignment explanation
Indices: 174759--174853 Score: 88
Period size: 27 Copynumber: 3.6 Consensus size: 27
174749 TCCTCTCCTC
*
174759 TCCTTATCAGTCGAGCCCCCTAAAGGG
1 TCCTTATCAGTCGAGCCACCTAAAGGG
** ** **
174786 TCCTTATCAGTCGAGCCTGCTGTAGCA
1 TCCTTATCAGTCGAGCCACCTAAAGGG
*
174813 TCCTTAT-GGTCGAG-CACCTAAA-GG
1 TCCTTATCAGTCGAGCCACCTAAAGGG
*
174837 TCCTTAACAGTCGAGCC
1 TCCTTATCAGTCGAGCC
174854 TGCTGTAGCA
Statistics
Matches: 51, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
24 6 0.12
25 10 0.20
26 7 0.14
27 28 0.55
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (27 bp):
TCCTTATCAGTCGAGCCACCTAAAGGG
Left flanking sequence: Indices 174259 -- 174758
AGTACACGTCTTCCAAGTGCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGA
GCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACG
CACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGACTC
CGTCCCTATAAAGTAGTAGGGGCGATGGCGGCCTTGACAGTCGAGTGTGCTAACGCACCCTGGTG
TTTATTTCGTTACATAAGTCATGGCAAGGCCCTGTCACGTTATAGGCGAACCTACTTGAAGAGTA
AGGCCCCCCTGATTCTGGGCCTGAAAGGTCTTATCAGGTCCTGGGTCAACCCAGCCAGTAAGGCC
CTGATCAACCCTCTCATTTTTTTCACCCGGTCCTCTCCTCTCCCTCTCCCTCTCCCTCTCCCTCT
CCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 174854 -- 175353
TGCTGTAGCATCCTTACTGGGCCCTTGATTTCTTCCCCTCAAAGAGCTCGAAGAGTTGGTCCTTC
CTGCGCCGGTCAACCCCTTCTAAGTAAGGTAAGGTCCTGCGCGTATTTTAGGGGAAGAAATGGCC
TGCGCCGGCCTTATTTGGTTGGTTTGGTCCTGCGCCGGTCCTGCGCCGGCCTTATTTTGTCGCCG
GCCTTACGAAAGATAAGGAGAACCTTTCGCTACGGGAAAGGGATAACCCTTCGCTATGCTCAAGG
GAGATCCTTCCCTTCGCTATGCTCGCTCAAGCCTACACAAATTCCCACCTACACCAATTATGGAA
GAACCGGGATAACGGTGTTATGTAGAATTGTACGAACACTGTTAGTAAATACTGCTTGGAACGGG
AGGCGGAAGGCGCGCAGTGGAAATGGAGTGGAATCGGAGCCAGCGCGAAAGCAATGGTCGACGAA
CGAAATAGTTTATTAGGGTCGATCCCTGGTGGGGGGCATGAAATG
Found at i:174842 original size:51 final size:54
Alignment explanation
Indices: 174759--174869 Score: 174
Period size: 51 Copynumber: 2.1 Consensus size: 54
174749 TCCTCTCCTC
* *
174759 TCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATCAGTCGAGCCTGCTGTAGCA
1 TCCTTATCAGTCGAGCCACCTAAAGGGTCCTTAACAGTCGAGCCTGCTGTAGCA
*
174813 TCCTTAT-GGTCGAG-CACCTAAA-GGTCCTTAACAGTCGAGCCTGCTGTAGCA
1 TCCTTATCAGTCGAGCCACCTAAAGGGTCCTTAACAGTCGAGCCTGCTGTAGCA
174864 TCCTTA
1 TCCTTA
174870 CTGGGCCCTT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
51 34 0.63
52 7 0.13
53 6 0.11
54 7 0.13
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (54 bp):
TCCTTATCAGTCGAGCCACCTAAAGGGTCCTTAACAGTCGAGCCTGCTGTAGCA
Left flanking sequence: Indices 174259 -- 174758
AGTACACGTCTTCCAAGTGCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTATCAGTCGA
GCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGTGCTTACG
CACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGACTC
CGTCCCTATAAAGTAGTAGGGGCGATGGCGGCCTTGACAGTCGAGTGTGCTAACGCACCCTGGTG
TTTATTTCGTTACATAAGTCATGGCAAGGCCCTGTCACGTTATAGGCGAACCTACTTGAAGAGTA
AGGCCCCCCTGATTCTGGGCCTGAAAGGTCTTATCAGGTCCTGGGTCAACCCAGCCAGTAAGGCC
CTGATCAACCCTCTCATTTTTTTCACCCGGTCCTCTCCTCTCCCTCTCCCTCTCCCTCTCCCTCT
CCTCTCCCTCTCCCTTAAGGTCGAGCACCTAAAGGTCCTCTCCTC
Right flanking sequence: Indices 174870 -- 175369
CTGGGCCCTTGATTTCTTCCCCTCAAAGAGCTCGAAGAGTTGGTCCTTCCTGCGCCGGTCAACCC
CTTCTAAGTAAGGTAAGGTCCTGCGCGTATTTTAGGGGAAGAAATGGCCTGCGCCGGCCTTATTT
GGTTGGTTTGGTCCTGCGCCGGTCCTGCGCCGGCCTTATTTTGTCGCCGGCCTTACGAAAGATAA
GGAGAACCTTTCGCTACGGGAAAGGGATAACCCTTCGCTATGCTCAAGGGAGATCCTTCCCTTCG
CTATGCTCGCTCAAGCCTACACAAATTCCCACCTACACCAATTATGGAAGAACCGGGATAACGGT
GTTATGTAGAATTGTACGAACACTGTTAGTAAATACTGCTTGGAACGGGAGGCGGAAGGCGCGCA
GTGGAAATGGAGTGGAATCGGAGCCAGCGCGAAAGCAATGGTCGACGAACGAAATAGTTTATTAG
GGTCGATCCCTGGTGGGGGGCATGAAATGCCCGACCCCGCCCGAT
Found at i:176777 original size:32 final size:32
Alignment explanation
Indices: 176724--176840 Score: 209
Period size: 32 Copynumber: 3.7 Consensus size: 32
176714 TCTCCCGTTG
* *
176724 GTCGAGCGTGC-TCCGCATCCTCTCCTTATCA
1 GTCGAGCCTGCTTGCGCATCCTCTCCTTATCA
176755 GTCGAGCCTGCTTGCGCATCCTCTCCTTATCA
1 GTCGAGCCTGCTTGCGCATCCTCTCCTTATCA
176787 GTCGAGCCTGCTTGCGCATCCTCTCCTTATCA
1 GTCGAGCCTGCTTGCGCATCCTCTCCTTATCA
176819 GTCGAGCCTGCTTGCGCATCCT
1 GTCGAGCCTGCTTGCGCATCCT
176841 TTGTTTGCGG
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
31 10 0.12
32 73 0.88
ACGTcount: A:0.12, C:0.38, G:0.21, T:0.30
Consensus pattern (32 bp):
GTCGAGCCTGCTTGCGCATCCTCTCCTTATCA
Left flanking sequence: Indices 176224 -- 176723
TGGCGCGTGCCACTTCCGTAGCGCGTCATGAGCACCGGGCAAAAGGCGGTTGAGCCACTCAAGTG
GGGCGAACCGCCCCCAAGGGAAAGAAGGGAGAGGGTTGCGAAGGTGGCCTCGTTATCCACACTGT
AGGTACGGGGAATGGGGTACGTCCCCCACCTTGGTTGGTTGGTTGTGCCCGGCCTGGGTTTTCTC
CGAACGAGCGTTGGCGGGTCCTGGAGTGCCCGTCAAGGGCGCGCATACCCCGGGGTGATTATCAC
CACCTGCACCCCACGATCGATCATCTCGGCACAGTGGAACGTGTAACCTGCCTGCTGCCCCATTC
AATTACACTTGTTCCTGTCATAGCCTACCTAACAGAACGCACGAGGGACAACCCTGGAATACTAA
GCAGCCAGCGGGGAGGATGGCACTACTGGCAAATACCGTCTGGCGAAAACGCCGCAGGCGCGAAG
CGTGGTAGGCCTGCGCCGAGAGCATAGGAAAATCCTCTCCCGTTG
Right flanking sequence: Indices 176841 -- 177340
TTGTTTGCGGGAGGAGCTGAGCCCGGACGGTGAAAGAGCCAGGGGAGGCCGGGTCATTGGAAATG
GAGAGGCCTTCTGATCCATTTCTTTAGGGGGTGAGGGTGCGTTAGCACGCTCGACTAAAAGGCCG
CCATCGCCCTTACTACTTTATAGGGGTCGCTCGACCAACGCCCCCCCACCCAATAAGCATCAAGG
ACCGGCAGGGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAAC
TTGAGTTGCTCGACCACCGGGCCGCCATCACCGGCAGGGTGCGGGGTCCTTATGGAGAGGCCATT
TAACTCCATCTTCTTTAGGGGGTGAGGGTGCAGCACGCCGACCAACGCCCCCCCACCCAATAAGC
ATCAAGGACCGGCAGGGTGCGTAAGCACGCTCGACTAATAAGGCCGCCATCGGCTCGACCACCGC
CTTTTAGTTACTTATTTGAGAGCCCAATAAGTCAATTTCAACTTG
Found at i:181991 original size:37 final size:37
Alignment explanation
Indices: 181949--182034 Score: 172
Period size: 37 Copynumber: 2.3 Consensus size: 37
181939 GGTCGAGCAA
181949 GCGGCTTCGCACCTTGCCCCTCCTTATTTCTTCTCTG
1 GCGGCTTCGCACCTTGCCCCTCCTTATTTCTTCTCTG
181986 GCGGCTTCGCACCTTGCCCCTCCTTATTTCTTCTCTG
1 GCGGCTTCGCACCTTGCCCCTCCTTATTTCTTCTCTG
182023 GCGGCTTCGCAC
1 GCGGCTTCGCAC
182035 AAGGTACTTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.06, C:0.41, G:0.19, T:0.35
Consensus pattern (37 bp):
GCGGCTTCGCACCTTGCCCCTCCTTATTTCTTCTCTG
Left flanking sequence: Indices 181449 -- 181948
ACAACCTGACCTGGGTACCTCCAACCAGGTGGGTGCCTTAATACGGAGCCCAGAATAAGGAATTA
GTGAACAGGCCGATCGGACTTTAGAGAATAGAACCTACTTTTATTATGATTATGAGTTGGATTTT
TTGAATTGAATTTGCGTTATTACATATATAATCTGAACACCTGACTTTACCTTCTTTGCACGAAT
CAACCCAGGATCATCATTGCCTTTCTTAATCCACGAACTTCCACAGCAGTTTTCCGGGTTGATTT
TGTTCCAGCAGCTTCCCTAGTTCCAGTTGTGCCCGTTGAACCGGTTGTTGACCCGGTCCCATATC
CTGTCGGAGATCGAGTAGTTTACCAAGTCTATGTAAAGCGCCGCTTGTTCACCGGTTAAGTCCAA
CCTTGTGGTTTTAGTGATTTGGTGGGTTTCGGTCAATTGTCTCTGCCACCTTAGCCGCTACCTCT
GTTGCCTTTACTCACCCCTTCCTTGCTCTTTCTTTGGTCGAGCAA
Right flanking sequence: Indices 182035 -- 182534
AAGGTACTTCTCATTGATTTGATTAGGCATAGATGCCTAATAGTATCAGTATCTATTACCAAGTG
ATGAGAGTAAGGCAAGCTCTCCTTCCTTGTCAAAGGACCATTGCAATAGTTGAGGTGGTAGGGGT
ATGGGATAAATAGGTTTGGTTGAGCGAGACCACTGGGTATGGGTGGGACTTCGTCAAGAAAGAGT
TCCGGAGGAGATGGGAGGCGTGAAATAACTCGCCTATAGATAGTAGGGCGAATCATTGACTTTTT
ATAACTACTCATGCTAACGAAAGGAATGGTTCTTCCATGCATGCCGGCGAACCAGATATGCCAAC
TATAGAGTAGAGGGCCCTCCGGACCTAGCTCTCGTACGAGTTTCTGAGCAGTAGGAAGCACCAAC
CTTGTCCTCGTGTGGATCTCCACTTAGAAAGGAGGGGGCGATTCCCGCGGATGTTTTGGGGTCCT
CCCTTCACAAGCCCTAAAAGAACCCTTCCTTAGTTTAGTTTTGCA
Found at i:183499 original size:18 final size:18
Alignment explanation
Indices: 183476--183510 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
183466 CCTCAAAAAG
183476 AAAGACGGCTGTCTCGTT
1 AAAGACGGCTGTCTCGTT
*
183494 AAAGACTGCTGTCTCGT
1 AAAGACGGCTGTCTCGT
183511 CGTTGGAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (18 bp):
AAAGACGGCTGTCTCGTT
Left flanking sequence: Indices 182976 -- 183475
CTCCATTTCTTCCACCCACCCTATATGTACTTCTGTAACTAACACTTTTGTATATCCAATGAGAG
ATAAAGGCTGCCTTCGCTCATCCCTACCACCCCTTTAGCAGTGATTCGATCTCGCCCGACATCAA
TAGTTGTTTCATTTTGATCGATAAGTGGACAACTGCCAGAGCCCTACTATCTATAGGTTGCCGAA
AGATTGGCTAAAACTTATAGATAGTTCCTGGTTATCCTAAAAGATAGTAAGTTCCTGGCCAATGA
GTACACGAAATCGGGTGATTCGCTAGTGGGACCTTCTATGGTCCTTCTCCAGCGAACATGACCGG
AAGAAGCAGGAGTCGTTGAAACAATCATTATAGAGTTCCCTCCCGGTTGGCTGGTCTCGAGCTTC
CTTATCTATAAGTAAACACAATGACCCTTCTGGTTAGTTTTGCTAATACCAATATATAGAATACA
AATATAGAGGATAGTCCCCTCTGGAAACCCCGGCACCTCAAAAAG
Right flanking sequence: Indices 183511 -- 184010
CGTTGGAGGAGATCCCCGCCAATGGATGAAGAGGATGCCGAACCCGAATCAGTCACTTGCCTTTT
CCGTGCACCCAACCCCTATTGGTTTGATTGGGCCGTACCCCTCTGCCTGCCTCATGAATGGGGTT
ACCTCCTCTCCCCGGAGCACCGAAATGAATTAATAATCGGACAGCCTTTTCTCTGAGGGCACCTC
GGGGCGATGCAATGAATGCACCTGCCTCCAAACTACTTTCTTCATCTGTTGACTTTGAAAGCCGA
ATGCTGCCCTACTATCGCAGGTGAAATGTCAGATATATGTGATATCGTTAAGCAGTAGCGATCAT
TACCGAACATGGAGGCAAGCGGTTTCTTTCTCTCTTTTTTTCGCTCTCATTATCAAACCTTCTCT
TCCGGCAAGCGGTATCGATTATTGCCCAACTAGGAGGCAAGCTTTCGCGATCATTACCAAACATG
GAAAACCATTATCTCTAAACCTCATTTGTGTAACCAGGCTCTAAG
Found at i:185971 original size:23 final size:23
Alignment explanation
Indices: 185928--185972 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
185918 CAAAACAGAG
*
185928 CCCTACCCTACGAAAAGGAAGAT
1 CCCTACCCTACGAAAACGAAGAT
*
185951 CCCTACCTTACCG-AAACGAAGA
1 CCCTACCCTA-CGAAAACGAAGA
185973 AAGGAATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.38, C:0.33, G:0.16, T:0.13
Consensus pattern (23 bp):
CCCTACCCTACGAAAACGAAGAT
Left flanking sequence: Indices 185428 -- 185927
TTTCACTCGTTCAACTGGCTCTTATGCTGTTGGTGGATCGACTCCTGCCCTTCTAGCTGATAGCT
TTGTGACTGGTCCTGGGGATGCTACTGGTGCTTTCATTCGGTCAAATGCAACAACTGGTATTGGT
GCTGGTGGCTATGGATTTGGGTAAACGGAGTTAACAGGCACTGGATATAGATATATATATATAAG
GTATAAGGAGTAAATAGGTAATCTGAATCTTATTGCGATAGGCTAGTGAAAGCTCTGTGCTGATA
GATACGAAGCTCGGAGTTACTGTTCGGAGTTCGGGGAAAGCAATACAGCTTTCATATCTGTCTTG
GCGAGGTAGGATTTGATATCTGGTAAATCGTGTCTGTCTTGGATCGCCCAAGGCACATCTTCCGA
TTCTCCGACAGGCACCATAGAGGGAGAAGCCCTCGATTATCCAGCCTTCGATTCGCCGATCCAGT
TCTCCGCAAGTTTCTGACTTAGAGTGCATAATAAACAAAACAGAG
Right flanking sequence: Indices 185973 -- 186472
AAGGAATCTATGTAGAGAAGCGCTGCTTGAAACTCATAGAGTAGACGTTAGCGTCGTACCTAGCT
ATTGGCTATTTCTAGTATGGTACAAGAGGAGAATCCGCCTATCAATTAGCATTTACGAGTGAGCA
AAGGGAATCTCTCTTTCCAGAGAGATGTTTCATCCGCTATCAGGTTCTTAGAGGATGCGCAAGTA
CAACAAAAAAATTCCACCTTCCTCCTTATCACTAGGAGAAACTGCCCTTTACTAGTCTTATAAGT
AAGTCCCACCATGGTGAAATAGACTTCTTAGTCCATTCTTAGTCCATGCAGTCCATGCATTAATA
CGTTGTTCATGTAGTACCCACTAGATATAATACTTTCTTTCCGACATTACCCACCAGAAATTTCT
TTATCGATGGCCTCTCAGCAGGTTCGGTAGGTCTTCTTGATTAGTTCAAGGTATTGATTAGTTCC
CATGCATGCTGCCTTACTGTCTGAGCTATAGGTCCCTTAGAGGTT
Found at i:186506 original size:13 final size:13
Alignment explanation
Indices: 186488--186514 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
186478 CATGGTCCTC
186488 CGGTATTATTAGT
1 CGGTATTATTAGT
186501 CGGTATTATTAGT
1 CGGTATTATTAGT
186514 C
1 C
186515 CCTGGTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (13 bp):
CGGTATTATTAGT
Left flanking sequence: Indices 185988 -- 186487
AGAAGCGCTGCTTGAAACTCATAGAGTAGACGTTAGCGTCGTACCTAGCTATTGGCTATTTCTAG
TATGGTACAAGAGGAGAATCCGCCTATCAATTAGCATTTACGAGTGAGCAAAGGGAATCTCTCTT
TCCAGAGAGATGTTTCATCCGCTATCAGGTTCTTAGAGGATGCGCAAGTACAACAAAAAAATTCC
ACCTTCCTCCTTATCACTAGGAGAAACTGCCCTTTACTAGTCTTATAAGTAAGTCCCACCATGGT
GAAATAGACTTCTTAGTCCATTCTTAGTCCATGCAGTCCATGCATTAATACGTTGTTCATGTAGT
ACCCACTAGATATAATACTTTCTTTCCGACATTACCCACCAGAAATTTCTTTATCGATGGCCTCT
CAGCAGGTTCGGTAGGTCTTCTTGATTAGTTCAAGGTATTGATTAGTTCCCATGCATGCTGCCTT
ACTGTCTGAGCTATAGGTCCCTTAGAGGTTAGGCCCATGGTCCTC
Right flanking sequence: Indices 186515 -- 187014
CCTGGTCTCTATTTATTCCCTAACCACCATAGAGTCAATACTCTTAGCTTCTGAGTCAGCCCTCT
TAGAGTGAACCCCACCCTATATGCCTACTAGTCCATAATGTGTCCGTCAAAAAAGAGAAATATAT
AGACCACCCATCATAGAGCTGCTCTAGGGAATCAGCTTCTTTTTTTCCTTGCCCCCGGAGGGACA
AGCGGCTTCGCACCTTGGTCTATATACGTGTTAACATATGATATTGCATTTATGCTTTATACCCG
CCCATCTAGACGTCCTTGCTATATTCTTTATATACGAGCTCGCATGGAGACGTTTACAAAGTCCA
TTGTCACAATAAATCAATACTTAGAGTTGGAATTGAGGACCGCCACTGTCGATGCAATCAATGTA
AGTGCCGCTACAAACAAGTGTTTATGCATCGTTAAAACAACCTTAATGAGTAGTGCAATCTTAGT
TATAATAAGTTTATGCTGTCGATCCATTCGAGCCAGGTTGTGATG
Found at i:192870 original size:20 final size:20
Alignment explanation
Indices: 192820--192862 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
192810 AAGGGCTAGG
192820 AGGTCTAGATCTTCTCGATC
1 AGGTCTAGATCTTCTCGATC
192840 AGGTCTAGATCTTCTCGATC
1 AGGTCTAGATCTTCTCGATC
192860 AGG
1 AGG
192863 CATTGATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (20 bp):
AGGTCTAGATCTTCTCGATC
Left flanking sequence: Indices 192320 -- 192819
AGCAGGAATCACGTACGTAAGTAATTGCATTCTGCCGGTTCGTTTTCTTCTCCTACTCCTAGCTG
GCCGGGGTGAATTCGACCAGCAAGCAGCCATCCATGTTCGTCAAGCCTAAAAGCAAGCCGTGTCA
AGTTCATCATCCATCTCCAGTTCGCAAGAAGAGATCGACGGGTATCATCAATCGAGAGATCAGGA
AGGCAGGTATCAATATCGAAGATCTCAGGCAGGCGGGAAGATAGATCGATCACAGCAGATAGTTT
TTGCCACTGCGGTCTTTCGGTTCACGTCCCTAGGTCTTGGTGTTCTGGCTCTTGTAGGTCTCCAG
GTCGAGGAGGTCGAGAATCGATCGGGTATAGAGATCAGCAGCAATCGGGCAGTTCTCAATTGAGA
ATCAATCATCGGGTGGAAGGATCGATTTCAATCAATCGGTGCTGCTCTTATTGTTGATCTCAGCG
TTAAGCCACGTTCTTAGTGGATCGTGTGGGGTCGCAAGGGCTAGG
Right flanking sequence: Indices 192863 -- 193362
CATTGATCAATCGATAATAGATCGGGTGTATCGGTTTCCTCCTTCAGTCTCCTACCTACCTCGCT
CGCCTTCCTAGGGCGCATATAACGTTACATAAGCGAAGCGTCCCGTGTATAGTTGTCGGTGCTCT
TGTAGCGCGAAGCATAGTCGTTGGTTTGGACCAGTTCTTCCATTGCTCCGTGCCCAATCCATGCC
GTGTTGGATCGATATGGTCCCGTCCCGTATGGTGCAACTTGACTTCAATATCTCATATCGTGGCA
ACAACATGGGGAACTAAATATCTCCCGTATTATGTGATGGGGGAAACTCAATATCTCGTATCGTG
TGATGTGGGAAATGGGTGTGATGGGTGCCACCTCGGGTTATATCGTCTATCCACACGTTCCCGCC
TCACGTTCTAGCCAAACGGGTGAAACCAGCCTCGGTTTAGTTCGACCAGCCAAACGTTCTAGCAT
CACGGTCTAGCGTCAAAGGCAATCCGTCAAGTTCTTTCATCGTCG
Found at i:193183 original size:31 final size:32
Alignment explanation
Indices: 193130--193199 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
193120 GCAACAACAT
*
193130 GGGG-AACTAAATATCTCCCGTATTATGTGATG
1 GGGGAAACTAAATATCT-CCGTATCATGTGATG
* *
193162 GGGGAAACTCAATATCT-CGTATCGTGTGATG
1 GGGGAAACTAAATATCTCCGTATCATGTGATG
*
193193 TGGGAAA
1 GGGGAAA
193200 TGGGTGTGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 18 0.55
32 4 0.12
33 11 0.33
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (32 bp):
GGGGAAACTAAATATCTCCGTATCATGTGATG
Left flanking sequence: Indices 192630 -- 193129
CTTGTAGGTCTCCAGGTCGAGGAGGTCGAGAATCGATCGGGTATAGAGATCAGCAGCAATCGGGC
AGTTCTCAATTGAGAATCAATCATCGGGTGGAAGGATCGATTTCAATCAATCGGTGCTGCTCTTA
TTGTTGATCTCAGCGTTAAGCCACGTTCTTAGTGGATCGTGTGGGGTCGCAAGGGCTAGGAGGTC
TAGATCTTCTCGATCAGGTCTAGATCTTCTCGATCAGGCATTGATCAATCGATAATAGATCGGGT
GTATCGGTTTCCTCCTTCAGTCTCCTACCTACCTCGCTCGCCTTCCTAGGGCGCATATAACGTTA
CATAAGCGAAGCGTCCCGTGTATAGTTGTCGGTGCTCTTGTAGCGCGAAGCATAGTCGTTGGTTT
GGACCAGTTCTTCCATTGCTCCGTGCCCAATCCATGCCGTGTTGGATCGATATGGTCCCGTCCCG
TATGGTGCAACTTGACTTCAATATCTCATATCGTGGCAACAACAT
Right flanking sequence: Indices 193200 -- 193699
TGGGTGTGATGGGTGCCACCTCGGGTTATATCGTCTATCCACACGTTCCCGCCTCACGTTCTAGC
CAAACGGGTGAAACCAGCCTCGGTTTAGTTCGACCAGCCAAACGTTCTAGCATCACGGTCTAGCG
TCAAAGGCAATCCGTCAAGTTCTTTCATCGTCGTCAGGTCGCAAGAAGAGAGATCCGTGTCTCAA
TCGAGATCCGGGTATCAATCGAGAGACAACCAGGTATCAAGAGAGAAGATCTAAGGTCTCTGGTT
CGTTGCTCTTGTCAAGCAAAGCATAATCTCGGGTGGGTCTCGCCTCACTAGCGTCACGTGTCGTC
TCGCCACACGGTCTAGGGTTACGTTCTCGCCTCACGGGTGGGTCTAGGGTAAAAGCAATCGCAGC
AATCCTAGCTTTTCCATGCCCCCACGCAATAGTTCTAAACGTTGTGAAATGAGAATAGGAAGGTT
TGGGTCTGCCCTGTAATTACCTCCTACCGGTAATTGCTAGTAACA
Found at i:193402 original size:18 final size:18
Alignment explanation
Indices: 193379--193418 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
193369 CGCAAGAAGA
* *
193379 GAGATCCGTGTCTCAATC
1 GAGATCCGGGTATCAATC
193397 GAGATCCGGGTATCAATC
1 GAGATCCGGGTATCAATC
193415 GAGA
1 GAGA
193419 GACAACCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.23
Consensus pattern (18 bp):
GAGATCCGGGTATCAATC
Left flanking sequence: Indices 192879 -- 193378
ATAGATCGGGTGTATCGGTTTCCTCCTTCAGTCTCCTACCTACCTCGCTCGCCTTCCTAGGGCGC
ATATAACGTTACATAAGCGAAGCGTCCCGTGTATAGTTGTCGGTGCTCTTGTAGCGCGAAGCATA
GTCGTTGGTTTGGACCAGTTCTTCCATTGCTCCGTGCCCAATCCATGCCGTGTTGGATCGATATG
GTCCCGTCCCGTATGGTGCAACTTGACTTCAATATCTCATATCGTGGCAACAACATGGGGAACTA
AATATCTCCCGTATTATGTGATGGGGGAAACTCAATATCTCGTATCGTGTGATGTGGGAAATGGG
TGTGATGGGTGCCACCTCGGGTTATATCGTCTATCCACACGTTCCCGCCTCACGTTCTAGCCAAA
CGGGTGAAACCAGCCTCGGTTTAGTTCGACCAGCCAAACGTTCTAGCATCACGGTCTAGCGTCAA
AGGCAATCCGTCAAGTTCTTTCATCGTCGTCAGGTCGCAAGAAGA
Right flanking sequence: Indices 193419 -- 193918
GACAACCAGGTATCAAGAGAGAAGATCTAAGGTCTCTGGTTCGTTGCTCTTGTCAAGCAAAGCAT
AATCTCGGGTGGGTCTCGCCTCACTAGCGTCACGTGTCGTCTCGCCACACGGTCTAGGGTTACGT
TCTCGCCTCACGGGTGGGTCTAGGGTAAAAGCAATCGCAGCAATCCTAGCTTTTCCATGCCCCCA
CGCAATAGTTCTAAACGTTGTGAAATGAGAATAGGAAGGTTTGGGTCTGCCCTGTAATTACCTCC
TACCGGTAATTGCTAGTAACACAATAACGTATTAAAGCAGTTGGATGTTTTCTTTATAGTGACCG
ACATCCCTATCATTCGGGTTATAGGAGTTAGAAAGAACACCTCTTCCTTTGGCTGAGCCCTCGAG
AACACAACAGTAATCTTTTGTCTTGTATTGTGTAAATAAAGAAAGAATCTTTTGTCTTGTGTCTT
GTGTGAATGAATACAGCAGTTGCTCAGAGGAAGGAGTTATGACCG
Found at i:194142 original size:27 final size:27
Alignment explanation
Indices: 194105--194163 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
194095 TAGTGAGTGA
194105 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
194132 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
194159 CCCCT
1 CCCCT
194164 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 193605 -- 194104
ATGCCCCCACGCAATAGTTCTAAACGTTGTGAAATGAGAATAGGAAGGTTTGGGTCTGCCCTGTA
ATTACCTCCTACCGGTAATTGCTAGTAACACAATAACGTATTAAAGCAGTTGGATGTTTTCTTTA
TAGTGACCGACATCCCTATCATTCGGGTTATAGGAGTTAGAAAGAACACCTCTTCCTTTGGCTGA
GCCCTCGAGAACACAACAGTAATCTTTTGTCTTGTATTGTGTAAATAAAGAAAGAATCTTTTGTC
TTGTGTCTTGTGTGAATGAATACAGCAGTTGCTCAGAGGAAGGAGTTATGACCGGGCTTCGCCTT
AACAGTTCTATAGGAGTCCAGTCTGTTAGGGTTATAGAGGAGGGCTGTTGCACTGAATAACTCGG
CTGTTGCATATAACTGAATCTAGGCAGTTGCGGGTAAGGAGTAGATAACAGGTAAGGCAGGGTAG
GGGGTAAGTCTGAGAGAAATCCCTCACCATATGAATAGTGAGTGA
Right flanking sequence: Indices 194164 -- 194663
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAAC
CAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTC
TCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAAT
AGTGAGTGGCTCCGCCCCTAAGTAATAAATATAGGGCCCTGATAATGCGTCCATCCGATGCATTC
TTTCCGATACAGCAGGAAGGCGAAGCCTCCCTCACACCGCACCACCGATGGCGGCCTTTTGGCCG
AGTGTGCTAACGCACCCATCAATAACAGTCGAGCACCTAAAGGTCCTTATAGTCGAGCTCTCTTT
CCATCCTCGTAACCTGGCCTGCCTGGCCTAACTCAGCTACGGGAT
Found at i:194173 original size:27 final size:27
Alignment explanation
Indices: 194115--194185 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
194105 CCCCTCTCCT
*** *
194115 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
194142 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
194169 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
194186 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 193615 -- 194114
GCAATAGTTCTAAACGTTGTGAAATGAGAATAGGAAGGTTTGGGTCTGCCCTGTAATTACCTCCT
ACCGGTAATTGCTAGTAACACAATAACGTATTAAAGCAGTTGGATGTTTTCTTTATAGTGACCGA
CATCCCTATCATTCGGGTTATAGGAGTTAGAAAGAACACCTCTTCCTTTGGCTGAGCCCTCGAGA
ACACAACAGTAATCTTTTGTCTTGTATTGTGTAAATAAAGAAAGAATCTTTTGTCTTGTGTCTTG
TGTGAATGAATACAGCAGTTGCTCAGAGGAAGGAGTTATGACCGGGCTTCGCCTTAACAGTTCTA
TAGGAGTCCAGTCTGTTAGGGTTATAGAGGAGGGCTGTTGCACTGAATAACTCGGCTGTTGCATA
TAACTGAATCTAGGCAGTTGCGGGTAAGGAGTAGATAACAGGTAAGGCAGGGTAGGGGGTAAGTC
TGAGAGAAATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCT
Right flanking sequence: Indices 194186 -- 194685
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGT
GAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTA
CGCACCCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAA
CCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAG
TAATAAATATAGGGCCCTGATAATGCGTCCATCCGATGCATTCTTTCCGATACAGCAGGAAGGCG
AAGCCTCCCTCACACCGCACCACCGATGGCGGCCTTTTGGCCGAGTGTGCTAACGCACCCATCAA
TAACAGTCGAGCACCTAAAGGTCCTTATAGTCGAGCTCTCTTTCCATCCTCGTAACCTGGCCTGC
CTGGCCTAACTCAGCTACGGGATTGGCTTTGAAAACACTGAAACT
Found at i:194382 original size:88 final size:88
Alignment explanation
Indices: 194233--194431 Score: 398
Period size: 88 Copynumber: 2.3 Consensus size: 88
194223 CCCTACCGGT
194233 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
1 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
194298 GGCAGTCGAGTGTGCTTACGCAC
66 GGCAGTCGAGTGTGCTTACGCAC
194321 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
1 CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
194386 GGCAGTCGAGTGTGCTTACGCAC
66 GGCAGTCGAGTGTGCTTACGCAC
194409 CCTCACCATATGAATAGTGAGTG
1 CCTCACCATATGAATAGTGAGTG
194432 GCTCCGCCCC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 111 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (88 bp):
CCTCACCATATGAATAGTGAGTGTGCTAACGCACCCTCTCCCCTCCTCTCAAATAAGTAACCAAA
GGCAGTCGAGTGTGCTTACGCAC
Left flanking sequence: Indices 193733 -- 194232
TATAGTGACCGACATCCCTATCATTCGGGTTATAGGAGTTAGAAAGAACACCTCTTCCTTTGGCT
GAGCCCTCGAGAACACAACAGTAATCTTTTGTCTTGTATTGTGTAAATAAAGAAAGAATCTTTTG
TCTTGTGTCTTGTGTGAATGAATACAGCAGTTGCTCAGAGGAAGGAGTTATGACCGGGCTTCGCC
TTAACAGTTCTATAGGAGTCCAGTCTGTTAGGGTTATAGAGGAGGGCTGTTGCACTGAATAACTC
GGCTGTTGCATATAACTGAATCTAGGCAGTTGCGGGTAAGGAGTAGATAACAGGTAAGGCAGGGT
AGGGGGTAAGTCTGAGAGAAATCCCTCACCATATGAATAGTGAGTGACCCCTCTCCTCTCCTTAT
CAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTATTAGTCGAGCGT
GCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGT
Right flanking sequence: Indices 194432 -- 194931
GCTCCGCCCCTAAGTAATAAATATAGGGCCCTGATAATGCGTCCATCCGATGCATTCTTTCCGAT
ACAGCAGGAAGGCGAAGCCTCCCTCACACCGCACCACCGATGGCGGCCTTTTGGCCGAGTGTGCT
AACGCACCCATCAATAACAGTCGAGCACCTAAAGGTCCTTATAGTCGAGCTCTCTTTCCATCCTC
GTAACCTGGCCTGCCTGGCCTAACTCAGCTACGGGATTGGCTTTGAAAACACTGAAACTTACCAG
CTAGTTCGGAAACAGGGAGACGTTCACCCCATGCTTCAGCCCAACCTTCACTGCACTCCTTTCTT
ACCCTAATTGAGAAACATCATTGAGAGACATAATGTTTCATCGACCCTCGCCCCTATAATATAAC
ACCTCCCTTATTGCACCTGCCTTTAGCAGCACCTGCCTCAATCAATATGTCACCGGGGGATTTGC
AATATAACTAAGCGGGGATAGAAACAACTAGGCTATATGAACAAC
Found at i:199870 original size:27 final size:27
Alignment explanation
Indices: 199832--199912 Score: 162
Period size: 27 Copynumber: 3.0 Consensus size: 27
199822 CCCTGTCCTT
199832 TGACTCATCCATCATACAATCTCATAC
1 TGACTCATCCATCATACAATCTCATAC
199859 TGACTCATCCATCATACAATCTCATAC
1 TGACTCATCCATCATACAATCTCATAC
199886 TGACTCATCCATCATACAATCTCATAC
1 TGACTCATCCATCATACAATCTCATAC
199913 ACTCTGTGAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.33, C:0.33, G:0.04, T:0.30
Consensus pattern (27 bp):
TGACTCATCCATCATACAATCTCATAC
Left flanking sequence: Indices 199332 -- 199831
AATATGATTCTATTTTATAGTGTTTGTTCGTATTTACTTGCCTACAGGAAGACTTTATGTTGGGC
AGCTCAGTTGTGATGTGGGATCGTGGGAACTTACTTCTTGGATTTACTATTTACTTATAAGATCT
TACACACTTGGGTTGGCACAGCATGGGCTATTACCCCTATTATGCTTAGCTTGCCTTTAACCAAC
AACCCACCTTTTACCAACCTATATTTCATACCTAACTTACCCCCCTACTTACTTATGCCCCAACC
TAGTGCTTCAGCCATAAATCTCAGTAGGATAGGCATTAGGAAAGAAAGAGCACTGGCTTTCAGAA
GGGAAGGATGCTCACAAGCGGTTATACGTAATAAAGACCAACGGAACGGGTGCGAAGAAACTAAA
GTGAAGGTTGAACAAAGGAACTTAGGTGAATGTCGAAAACCATATAAATCGCCCTTGTAGCGCAT
TCTATTACCACTTCCAGTCCACCCTTGACGAGGGGCCCTGTCCTT
Right flanking sequence: Indices 199913 -- 200412
ACTCTGTGACTCACGCTCTTACTCTTCCTCAATAAAGAAAAGAGTGATAGAAACCCTCCTCCCAT
ACTACCATAGATTTTCCCATTAACCTGTTCTATTCTTGCGCCTTCCCACTGCAATAGTAAACGGG
TAGGTGGGACCAAGTTCAAGATCAAAGTGATAGAGAGGTCAAGTGCTTGCTATCAGGACTAACCT
TCTTCTATTTAGTTAGTTCATCTCTGGTCAAATTACCTCGACTTTCCCTATATAGGGGGGCAGTT
ATCCTCTATTCAAGTCATTCATCCAGTTCTTTATAAGGAAGAGTTGGATTTAAGAAGAACGTAAC
AAATAAAGTCATAAGAATTAGGTTGAAGAAGCAAATATAACCAATCTTTCAAAACGTGCTCAATG
GCTCTTATAAAGCATTCTATCGCCATTTCTAATCCACCCTCGACGTTAGTGGAAGCGTTGGCCCT
GTGCCTGTGACTCACACTTTGACTTTTCAATAAGAAAAGAAAAGA
Found at i:199873 original size:17 final size:17
Alignment explanation
Indices: 199853--199902 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
199843 TCATACAATC
199853 TCATACTGACTCATCCA
1 TCATACTGACTCATCCA
199870 TCATAC--A---AT-C-
1 TCATACTGACTCATCCA
199880 TCATACTGACTCATCCA
1 TCATACTGACTCATCCA
199897 TCATAC
1 TCATAC
199903 AATCTCATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 14
0.65 0.00 0.35
Matches are distributed among these distances:
10 6 0.23
11 1 0.04
12 3 0.12
15 3 0.12
16 1 0.04
17 12 0.46
ACGTcount: A:0.32, C:0.34, G:0.04, T:0.30
Consensus pattern (17 bp):
TCATACTGACTCATCCA
Left flanking sequence: Indices 199353 -- 199852
GTTTGTTCGTATTTACTTGCCTACAGGAAGACTTTATGTTGGGCAGCTCAGTTGTGATGTGGGAT
CGTGGGAACTTACTTCTTGGATTTACTATTTACTTATAAGATCTTACACACTTGGGTTGGCACAG
CATGGGCTATTACCCCTATTATGCTTAGCTTGCCTTTAACCAACAACCCACCTTTTACCAACCTA
TATTTCATACCTAACTTACCCCCCTACTTACTTATGCCCCAACCTAGTGCTTCAGCCATAAATCT
CAGTAGGATAGGCATTAGGAAAGAAAGAGCACTGGCTTTCAGAAGGGAAGGATGCTCACAAGCGG
TTATACGTAATAAAGACCAACGGAACGGGTGCGAAGAAACTAAAGTGAAGGTTGAACAAAGGAAC
TTAGGTGAATGTCGAAAACCATATAAATCGCCCTTGTAGCGCATTCTATTACCACTTCCAGTCCA
CCCTTGACGAGGGGCCCTGTCCTTTGACTCATCCATCATACAATC
Right flanking sequence: Indices 199903 -- 200402
AATCTCATACACTCTGTGACTCACGCTCTTACTCTTCCTCAATAAAGAAAAGAGTGATAGAAACC
CTCCTCCCATACTACCATAGATTTTCCCATTAACCTGTTCTATTCTTGCGCCTTCCCACTGCAAT
AGTAAACGGGTAGGTGGGACCAAGTTCAAGATCAAAGTGATAGAGAGGTCAAGTGCTTGCTATCA
GGACTAACCTTCTTCTATTTAGTTAGTTCATCTCTGGTCAAATTACCTCGACTTTCCCTATATAG
GGGGGCAGTTATCCTCTATTCAAGTCATTCATCCAGTTCTTTATAAGGAAGAGTTGGATTTAAGA
AGAACGTAACAAATAAAGTCATAAGAATTAGGTTGAAGAAGCAAATATAACCAATCTTTCAAAAC
GTGCTCAATGGCTCTTATAAAGCATTCTATCGCCATTTCTAATCCACCCTCGACGTTAGTGGAAG
CGTTGGCCCTGTGCCTGTGACTCACACTTTGACTTTTCAATAAGA
Found at i:203492 original size:13 final size:14
Alignment explanation
Indices: 203458--203494 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
203448 TCCTAGCCAG
*
203458 TCAGACCAGTCAGC
1 TCAGACCAGTCAGA
203472 T-AGACCAGTCAGA
1 TCAGACCAGTCAGA
203485 TCAG-CCAGTC
1 TCAGACCAGTC
203495 CGTTTCCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 18 0.86
14 3 0.14
ACGTcount: A:0.30, C:0.32, G:0.22, T:0.16
Consensus pattern (14 bp):
TCAGACCAGTCAGA
Left flanking sequence: Indices 202958 -- 203457
GTCGACTAGAGTGAAGGAAGTAAGTAAGGTAAGGGTCTCTAGGTGGGGTTGGTAGCAGGGATGAA
AATGAAGAAGTTCTTCCTAGCCCGTGGGTTCAAATGGATGAATCGGTATTGTATTGGCTCCTCGG
TGGGAACTACCAAGAAGGTAATAGTGGTACCCCCATAATTAAGCAAGTGTTATCGAAGGCCTGTC
CCAACAAGGCTCTCCTAATTGATAATAATCCATCAATTTTTCATAAGTTCTGGACCTTATAAATC
AGAAAGAGGGAAGAGAACCAGTACTATGGGGAATAAGGCTTTTGTATTGGGGAAAAGAAAACGTA
TACCCTTGACTGACTTACATTGCCTAGATGCAGCCACTCCTTTTTTAGACTATACCCACTCATAA
CCAGTAGGCACCCTAGCCTGCCTCCTCCATAGCCAGCCAAAAAAAGCCAGCCAGTAAACTGTTGT
TAGTCGCGCTGATCCTTTCACTGGGGATCCAGCCATCCTAGCCAG
Right flanking sequence: Indices 203495 -- 203994
CGTTTCCCGGTGCTAGTTACAGTTCCCTGGTAGGTAGCACCCACTAGACCTATACTGATATCTCC
AGATGCCGGGGCAAAGCGAAAGCTTGTTGGGGTTATAGATAGGGAAGACGAGCGCTGTATACCCT
CTACCAGTTGGTTGAGTGAAACCACCAGCAGAGCCTATTTCAATAGTATCTGCATAACCAGTTCC
AGGTACAGCTCAAGCAGATCCAGTCCCAGTTCTAGTTCGAGTGCGAATGCCAGCATTCCTCCCAT
TGCTAGTTTCATATCCAAAGTCCCCCGTTCGAGTAAGCATCCTCGCCATTTTCAGAACCTGAAGT
AGCATAGGTAGAGCCAACGAGAGCGGATCCAGTTTCAAGTGCAGATCAAGCAAATGTTAGAGACT
ATTGAGTTCTATAGTAATAGCCTGCTAACCGAGTTTACCCCATGTCCTCACCAGTCCTTGCTTCC
CTGAACCCTATTCCAGTCCCAGAAGTCCCAGATCGAGTTCGAGTT
Found at i:208788 original size:15 final size:16
Alignment explanation
Indices: 208765--208795 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
208755 TAGCATTATC
208765 CCTTCTATTATATTAG
1 CCTTCTATTATATTAG
208781 CCTT-TATTATATTAG
1 CCTTCTATTATATTAG
208796 TAGGTTGCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (16 bp):
CCTTCTATTATATTAG
Left flanking sequence: Indices 208265 -- 208764
CGAAAAGAAATCAATGGTGAGATGAGACGTCCGTGCCATTAATACGTAGATATACATCTATTCTT
CATTGATTGTCGGTGGCGGATCTTTACTCCTCTCGAAAGTGATCGGTGGCTCGGAACCAGCAGCA
GAGGTGTCGGTGCAGCCATCCGTACCAATGCATCTTAGCTAGCAGCATGCCGGTTCGAAAGTCGA
TGAATCAGCGACGAAGCGCAAAGCACTACCCATTTATCCATCTATTCTCACAGAACTAGCTGCCT
TAACTATGATTTCTATAGAATTGCTTGTTCAACTCCAATAGAAAGAAGCTGCACTTCATTAACTA
GAAAACATGAAAGCTCTTTAATGAATTGAACAGCCCGCGAGGTATTCTCTGTCTCCTTCCTCTGA
ACTGACCCTTTACCCAACTACTGAATTAACTGACCCGAAATCGCAACTACCTTATTATGGCCCAA
TACCTAATTCCGTGCCGTATCAGGGTGCCTGGCTCTAGCATTATC
Right flanking sequence: Indices 208796 -- 209295
TAGGTTGCGATTCTTAATTATGTACTGCCTGGAAGGCCGGAATGTGCTTATGTCCTATAATATAA
TAGAATCTAATATGGGCTTCGGCCCTATAATATAATAGGGGGTGTTCATCATTCATGTGCGGATG
CTGGCCGCGAATGACAGAATAAAGGAAATAAGAAAAGAAAAGAATGCTGCATTGGTAAGGAATGC
TGCTCCCTCGACTACTAGATATAGATTTGTCATTGCAGTTCCTCGCTCGAATTAGATAGATGTTC
GCTCGAACCAGTGAAAGTTTGATTCCCTGCCTTCGTAAAACTACGTACGCATCTTCGTTGCCTGG
GGTGCTTTGTAGATACAGGTCGAGGGCCTCTCTGGTGCTTTGCCAAATGGGAGAGATATCCTCGT
ATCGTAGTATTACCTATGATCAAAGAATGAATTGATTGATGGAGGTCCCACTGGACATACTGCCT
TCTCTAGGCCATGGGTTTAGGCCAGCGGGGAACATTGATGACTTT
Found at i:212705 original size:17 final size:17
Alignment explanation
Indices: 212665--212721 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
212655 AGCATAGGGC
212665 AGAGCATAGTCT--TAG
1 AGAGCATAGTCTAATAG
*
212680 AATAGCATAGTCTAATAG
1 -AGAGCATAGTCTAATAG
*
212698 AGAGCATAG-CATAAGAG
1 AGAGCATAGTC-TAATAG
212715 AGAGCAT
1 AGAGCAT
212722 TGTACCCAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 12 0.34
17 20 0.57
18 3 0.09
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (17 bp):
AGAGCATAGTCTAATAG
Left flanking sequence: Indices 212165 -- 212664
ATTTGAGAGGGGCCACCCAATAAGTAAATTGAAAAGGAAGGAACATTCCAGTCAGGAGAGAGAAT
AAGTTGAAACCAATCATGGGGTCCATAAAAGTTAGAGCAGACTAGGGTAGGAATAGTACTAAGGC
GATGATAGTAGTAGGTAGGAGAGAGCATTGTTTATTCGGTAACCTTGATTCGCTCCGGTCACCTT
CCTTTGCTTCGGGTAGGTGGGTTCCGCTCTCTATTCATCTGGACTTTTGAAACCAATAACTAGTG
GGTGGGCTATAGACAGGTATATAGACTGCCATAAGGTCTTGCCGGACTATTAGCCGGTTGTCCAT
ACAGTAAAGACTATTAGCCTCTATGACAAGCCTTATAAATAGAAATTAGCTTTCTTTCAATACCC
TGAACTTCCCCTTTATGTATGAACCTTCGACTTTATGAGCGCGATGAACTGGTGACATGACACTT
TCACTTTGACCCTTTCTGACCCTTTCACAAGAAAGAGCATAGGGC
Right flanking sequence: Indices 212722 -- 213221
TGTACCCAGTTAATTGCTAACGCTCATGGTTGACAGGAAAGCTACCGCTAGCTCACTATTCCCCT
GAGCTCTAGCGAAGAAGCTTCTGGTTTTCTCCTTTCCTTTGAAATAAGGATAAGACCTAGCTGGG
AAAACCTAACCAGCAGACCTTGCCATTGCAGCCAGACCTACTACTACAACCTATTAATCTACAAT
ATCGCATCTATACGTTTCACTTTACTTTGTAAGTAAGTGGTGATTGTTAGTGCAGGTTCATCCCA
CCATTCCAGGAAGGTCGTTGCCACAAGGAAAGTAGGGGCCTACTCAAAGAGGAGGAGCTACAGGT
CGCAGGGACTAATCAATGGTTTTTACTCCACAGGGAGAACCGTGCATACCCGTTCAATTCATATG
GTATGGTCCCTACGTGTTAATATATGATATCGCATTGATACGTTTCACTTTTCCTGGGACAACTA
ACTAAATGGTTCCCATACAGCTGTAGTTCAGTTGTTCAACTTTGT
Found at i:215840 original size:13 final size:13
Alignment explanation
Indices: 215822--215864 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
215812 TATCCCATCC
215822 GAGCCCAGCCAAT
1 GAGCCCAGCCAAT
*
215835 GAGCCCATCC---
1 GAGCCCAGCCAAT
215845 GAGCCCAGCCAAT
1 GAGCCCAGCCAAT
215858 GAGCCCA
1 GAGCCCA
215865 TCCGAGCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 9 0.36
13 16 0.64
ACGTcount: A:0.28, C:0.42, G:0.23, T:0.07
Consensus pattern (13 bp):
GAGCCCAGCCAAT
Left flanking sequence: Indices 215322 -- 215821
CGAGGTTACGAGTGTGAGGTTGAAACTTTTCCATTTGAATGTGTAATCTATGCAATCAGCAGAAT
CTGAAAATGAAAAAGTGAAAGCCTTGTCCATACAGTTAGTTCTAATTAGTTGTAGTTCTTCGGCA
GTTTCTCTTGTTCTCATGGTTACTACTGACGAGGTCTAAAGAAGGGACACCTTGACTTAAGTCCC
CTTTCAAGCCAACATACCCAATATAGAGGTGTAGTATCCCACCATTTCCTTGCACGAAAGACACA
CTGAAATCGCGGCAAGGACTCCTGGCTGGTAACACTACCTACTATTTCCTGGGAATAATCGGGGA
AAGGTAGAGCGGTGGCTTCAGTAAGGCCTTGTTCCCAGTCGAGTAGCCCATGTGAGTATCCCAGC
GTAGTCTTTCCCAGTCTACCCGGTATCCAACCAAGTCAAGTAGCGCAGTTGAGTATCCAAGCTGA
GTAGCTGATAAACCGAGCCCGGTTCAGTATCTGAGTATCCCATCC
Right flanking sequence: Indices 215865 -- 216364
TCCGAGCTCTGACTGGCAATGAATGTCATTATGCCTCTGTCTTGTCATTATGCCTCTGTGAGGTG
CTGTAGTAACCTTGTGTTCTGTATGGCGGTGCCCTTACATTATATATGAGCATGTGGTTTCACAA
GCAGGTCGCTTTTCGATCAAATCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTCATTTGGC
CCAGCTCCCCTTTCAATCTCTCCTCCCATTCCTTATGAGGCTGATTAGCCAGTGTGGGTAGTACT
TAATGAAGGGTACAGTCAATCTGAGATATTAGGGTTTTCGCACAAACCGAATCGAATCCCCGCCG
TGGGAGGTTATGTCTCTCTCTCTCAATCCCACGGCGCCTAACCCCTGATGATTCGCCTCCGCCCA
ACCATCAGTTTGTGCACCCGGTTTCAAAAGTAAGTTTCCCTCAATCCGCGTATAACCGGGAGGAA
TCAGTTCAGTCAGATCTGTTCTGAATCCCCGGGACTGAGGGTCCA
Found at i:215841 original size:23 final size:23
Alignment explanation
Indices: 215815--215871 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
215805 ATCTGAGTAT
215815 CCCATCCGAGCCCAGCCAATGAG
1 CCCATCCGAGCCCAGCCAATGAG
215838 CCCATCCGAGCCCAGCCAATGAG
1 CCCATCCGAGCCCAGCCAATGAG
215861 CCCATCCGAGC
1 CCCATCCGAGC
215872 TCTGACTGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.25, C:0.46, G:0.21, T:0.09
Consensus pattern (23 bp):
CCCATCCGAGCCCAGCCAATGAG
Left flanking sequence: Indices 215315 -- 215814
GCTCATACGAGGTTACGAGTGTGAGGTTGAAACTTTTCCATTTGAATGTGTAATCTATGCAATCA
GCAGAATCTGAAAATGAAAAAGTGAAAGCCTTGTCCATACAGTTAGTTCTAATTAGTTGTAGTTC
TTCGGCAGTTTCTCTTGTTCTCATGGTTACTACTGACGAGGTCTAAAGAAGGGACACCTTGACTT
AAGTCCCCTTTCAAGCCAACATACCCAATATAGAGGTGTAGTATCCCACCATTTCCTTGCACGAA
AGACACACTGAAATCGCGGCAAGGACTCCTGGCTGGTAACACTACCTACTATTTCCTGGGAATAA
TCGGGGAAAGGTAGAGCGGTGGCTTCAGTAAGGCCTTGTTCCCAGTCGAGTAGCCCATGTGAGTA
TCCCAGCGTAGTCTTTCCCAGTCTACCCGGTATCCAACCAAGTCAAGTAGCGCAGTTGAGTATCC
AAGCTGAGTAGCTGATAAACCGAGCCCGGTTCAGTATCTGAGTAT
Right flanking sequence: Indices 215872 -- 216371
TCTGACTGGCAATGAATGTCATTATGCCTCTGTCTTGTCATTATGCCTCTGTGAGGTGCTGTAGT
AACCTTGTGTTCTGTATGGCGGTGCCCTTACATTATATATGAGCATGTGGTTTCACAAGCAGGTC
GCTTTTCGATCAAATCCTTGCCCCCGGAGGGACAAGCGGCTTCGCACCTTCATTTGGCCCAGCTC
CCCTTTCAATCTCTCCTCCCATTCCTTATGAGGCTGATTAGCCAGTGTGGGTAGTACTTAATGAA
GGGTACAGTCAATCTGAGATATTAGGGTTTTCGCACAAACCGAATCGAATCCCCGCCGTGGGAGG
TTATGTCTCTCTCTCTCAATCCCACGGCGCCTAACCCCTGATGATTCGCCTCCGCCCAACCATCA
GTTTGTGCACCCGGTTTCAAAAGTAAGTTTCCCTCAATCCGCGTATAACCGGGAGGAATCAGTTC
AGTCAGATCTGTTCTGAATCCCCGGGACTGAGGGTCCATCTCCCA
Found at i:216882 original size:25 final size:25
Alignment explanation
Indices: 216815--216882 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 25
216805 TGCTTGCGCA
216815 TCCTTAACAGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
**
216840 TCCTT-AGGGTCGAGCACCTAAAGG
1 TCCTTAACAGTCGAGCACCTAAAGG
216864 TCCTTAACAGTCGAGCACC
1 TCCTTAACAGTCGAGCACC
216883 CTGCCGGGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 22 0.58
25 16 0.42
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (25 bp):
TCCTTAACAGTCGAGCACCTAAAGG
Left flanking sequence: Indices 216315 -- 216814
AGGAATCAGTTCAGTCAGATCTGTTCTGAATCCCCGGGACTGAGGGTCCATCTCCCATTCGATCA
GTGAATGGGACGATCAGCAAACATGCAGGTAGGTTGAACCCGGTGAAGGGCAAGGTATGTCAATC
GCTTGTCTGTAATCAGACAAGGTCTCCCCGAAGGCCCGGGACTGTAACAATCACCTGGACGCATC
GGCTATACCCGACTCGAACAGCAAACCCATGAAAATGAGTGAAAACGGTATGTCGATGCGCGGCG
TAGGGCCTCCCAGGCCTGTAGCCGGCTCAGGAAGATGGTACAAGATACGAAATCTTTCCATCGAG
AGTATCCACCTCCCACCTCAATCTGAAAATTCAGCATAAAGAAAAGATTTCATCCTCTCCTCTCC
CTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTTAGGG
TTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCA
Right flanking sequence: Indices 216883 -- 217382
CTGCCGGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCCTAACGGTCGAG
CCCCCTAAAGGGTCCTCTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGGTCCT
CTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTT
ATTGCCCCACCCAATAAGTCAACCCTAACAGTCGAGCCTGCTTAAGCATCCTGAAGGGGTGAAAA
ATAGAAGGGAAGGTCCTTATATTACCTGAGCTAGAAGGTAAGTAAGGGGATAGCCAGCGCTTGAA
TGAGATCCCTATCATGCCGTGACTATAGAAAGGACGCAATAACCCACCCGGCTCAGGTTCAGGCG
CAGAGCTCAGGTACCTTCCCTGAGCTACGACGCGAACAGACAGAAGGTCCTGAAGCTCTCACTTA
CCAGCTAGAAGGTAAGGCCTTGACCAACCGGTAAAGGCCCGATCA
Found at i:216976 original size:11 final size:11
Alignment explanation
Indices: 216960--216985 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
216950 CCCTAAAGGG
216960 TCCTCTCCCTC
1 TCCTCTCCCTC
216971 TCCTCTCCCTC
1 TCCTCTCCCTC
216982 TCCT
1 TCCT
216986 TAACAGTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (11 bp):
TCCTCTCCCTC
Left flanking sequence: Indices 216460 -- 216959
GACAAGGTCTCCCCGAAGGCCCGGGACTGTAACAATCACCTGGACGCATCGGCTATACCCGACTC
GAACAGCAAACCCATGAAAATGAGTGAAAACGGTATGTCGATGCGCGGCGTAGGGCCTCCCAGGC
CTGTAGCCGGCTCAGGAAGATGGTACAAGATACGAAATCTTTCCATCGAGAGTATCCACCTCCCA
CCTCAATCTGAAAATTCAGCATAAAGAAAAGATTTCATCCTCTCCTCTCCCTCTTGGGTTTACTT
ATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTT
GGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGT
CGAGCACCTAAAGGTCCTTAACAGTCGAGCACCCTGCCGGGTCCTCACCATCGGAATGGTGAGCC
CCTACCGGTCCTCTCCTCTCCCTAACGGTCGAGCCCCCTAAAGGG
Right flanking sequence: Indices 216986 -- 217485
TAACAGTCGAGCCCCCTAAAGGGTCCTCTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCACCT
AAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTAACAGTCGAGCC
TGCTTAAGCATCCTGAAGGGGTGAAAAATAGAAGGGAAGGTCCTTATATTACCTGAGCTAGAAGG
TAAGTAAGGGGATAGCCAGCGCTTGAATGAGATCCCTATCATGCCGTGACTATAGAAAGGACGCA
ATAACCCACCCGGCTCAGGTTCAGGCGCAGAGCTCAGGTACCTTCCCTGAGCTACGACGCGAACA
GACAGAAGGTCCTGAAGCTCTCACTTACCAGCTAGAAGGTAAGGCCTTGACCAACCGGTAAAGGC
CCGATCAACCCTTCACATTTTCACCCGGGTTGTGGATTTACCTCTAGCGAACTTCCCAAGATCAA
GACTTATAGCTAGAAGGCCTTGTCTTATGGAGGGCCTAATTCACC
Found at i:216995 original size:49 final size:49
Alignment explanation
Indices: 216923--217063 Score: 234
Period size: 49 Copynumber: 2.9 Consensus size: 49
216913 CCCCTACCGG
* *
216923 TCCTCT-CCTCTCCCTAACGGTCGAGCCCCCTAAAGGGTCCTCTCCCTC
1 TCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGGTCCTCTCCCTC
216971 TCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGGTCCTCTCCCTC
1 TCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGGTCCTCTCCCTC
*
217020 TCCTCTCCCTCTCCTTAACAGTCGAG-CACCTAAA-GGTCCTCTCC
1 TCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGGTCCTCTCC
217064 TCTTGGGTTT
Statistics
Matches: 89, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
47 10 0.11
48 13 0.15
49 66 0.74
ACGTcount: A:0.15, C:0.46, G:0.13, T:0.26
Consensus pattern (49 bp):
TCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGGTCCTCTCCCTC
Left flanking sequence: Indices 216423 -- 216922
TGAAGGGCAAGGTATGTCAATCGCTTGTCTGTAATCAGACAAGGTCTCCCCGAAGGCCCGGGACT
GTAACAATCACCTGGACGCATCGGCTATACCCGACTCGAACAGCAAACCCATGAAAATGAGTGAA
AACGGTATGTCGATGCGCGGCGTAGGGCCTCCCAGGCCTGTAGCCGGCTCAGGAAGATGGTACAA
GATACGAAATCTTTCCATCGAGAGTATCCACCTCCCACCTCAATCTGAAAATTCAGCATAAAGAA
AAGATTTCATCCTCTCCTCTCCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGG
GTCGAGCACCTAAAGGTTAGGGTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCG
CATCCTTAACAGTCGAGCACCTAAAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGA
GCACCCTGCCGGGTCCTCACCATCGGAATGGTGAGCCCCTACCGG
Right flanking sequence: Indices 217064 -- 217563
TCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCCTAACAGTCGAGCCTGCTTAAGCATCC
TGAAGGGGTGAAAAATAGAAGGGAAGGTCCTTATATTACCTGAGCTAGAAGGTAAGTAAGGGGAT
AGCCAGCGCTTGAATGAGATCCCTATCATGCCGTGACTATAGAAAGGACGCAATAACCCACCCGG
CTCAGGTTCAGGCGCAGAGCTCAGGTACCTTCCCTGAGCTACGACGCGAACAGACAGAAGGTCCT
GAAGCTCTCACTTACCAGCTAGAAGGTAAGGCCTTGACCAACCGGTAAAGGCCCGATCAACCCTT
CACATTTTCACCCGGGTTGTGGATTTACCTCTAGCGAACTTCCCAAGATCAAGACTTATAGCTAG
AAGGCCTTGTCTTATGGAGGGCCTAATTCACCCTGCTATTACCCTATCCTTATAAAGGAAAAAAC
CCCTATTGACTTATTTGGTGGGGGGCCGGTCGAGAGTTCGCTTAC
Found at i:217025 original size:11 final size:11
Alignment explanation
Indices: 217009--217034 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
216999 CCCTAAAGGG
217009 TCCTCTCCCTC
1 TCCTCTCCCTC
217020 TCCTCTCCCTC
1 TCCTCTCCCTC
217031 TCCT
1 TCCT
217035 TAACAGTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (11 bp):
TCCTCTCCCTC
Left flanking sequence: Indices 216509 -- 217008
CGGCTATACCCGACTCGAACAGCAAACCCATGAAAATGAGTGAAAACGGTATGTCGATGCGCGGC
GTAGGGCCTCCCAGGCCTGTAGCCGGCTCAGGAAGATGGTACAAGATACGAAATCTTTCCATCGA
GAGTATCCACCTCCCACCTCAATCTGAAAATTCAGCATAAAGAAAAGATTTCATCCTCTCCTCTC
CCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAACCTGGGGTCGAGCACCTAAAGGTTAGG
GTTTACTTATTGGGTTGGGGGGTTAACAGTCGAGCATGCTTGCGCATCCTTAACAGTCGAGCACC
TAAAGGTCCTTAGGGTCGAGCACCTAAAGGTCCTTAACAGTCGAGCACCCTGCCGGGTCCTCACC
ATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCCTAACGGTCGAGCCCCCTAAAGGGTCCT
CTCCCTCTCCTCTCCCTCTCCTTAACAGTCGAGCCCCCTAAAGGG
Right flanking sequence: Indices 217035 -- 217534
TAACAGTCGAGCACCTAAAGGTCCTCTCCTCTTGGGTTTACTTATTGCCCCACCCAATAAGTCAA
CCCTAACAGTCGAGCCTGCTTAAGCATCCTGAAGGGGTGAAAAATAGAAGGGAAGGTCCTTATAT
TACCTGAGCTAGAAGGTAAGTAAGGGGATAGCCAGCGCTTGAATGAGATCCCTATCATGCCGTGA
CTATAGAAAGGACGCAATAACCCACCCGGCTCAGGTTCAGGCGCAGAGCTCAGGTACCTTCCCTG
AGCTACGACGCGAACAGACAGAAGGTCCTGAAGCTCTCACTTACCAGCTAGAAGGTAAGGCCTTG
ACCAACCGGTAAAGGCCCGATCAACCCTTCACATTTTCACCCGGGTTGTGGATTTACCTCTAGCG
AACTTCCCAAGATCAAGACTTATAGCTAGAAGGCCTTGTCTTATGGAGGGCCTAATTCACCCTGC
TATTACCCTATCCTTATAAAGGAAAAAACCCCTATTGACTTATTT
Found at i:217781 original size:24 final size:24
Alignment explanation
Indices: 217749--217795 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
217739 TGCGCAAGCA
217749 GGCTCGACCAAAGGGAGAGGATGT
1 GGCTCGACCAAAGGGAGAGGATGT
*
217773 GGCTCGACCAACGGGAGAGGATG
1 GGCTCGACCAAAGGGAGAGGATG
217796 CGTAAGCATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.43, T:0.11
Consensus pattern (24 bp):
GGCTCGACCAAAGGGAGAGGATGT
Left flanking sequence: Indices 217249 -- 217748
ACCCACCCGGCTCAGGTTCAGGCGCAGAGCTCAGGTACCTTCCCTGAGCTACGACGCGAACAGAC
AGAAGGTCCTGAAGCTCTCACTTACCAGCTAGAAGGTAAGGCCTTGACCAACCGGTAAAGGCCCG
ATCAACCCTTCACATTTTCACCCGGGTTGTGGATTTACCTCTAGCGAACTTCCCAAGATCAAGAC
TTATAGCTAGAAGGCCTTGTCTTATGGAGGGCCTAATTCACCCTGCTATTACCCTATCCTTATAA
AGGAAAAAACCCCTATTGACTTATTTGGTGGGGGGCCGGTCGAGAGTTCGCTTACTCACCCTGCT
ATTTGTCTTTTACCCGAGTTAGGCCAACCGCCATAAAGGTCCCCCGTATTGACCTACTTGGCTTG
GTAAGTATTGAAATAGACTCTGAATTGACGAACGGAGAGAAACGGAGTCGCTCTAAAGACCAGAG
GAAGAATTGCTCGTCCTAATCAAGTGGGGCGAGGATGCGCAAGCA
Right flanking sequence: Indices 217796 -- 218295
CGTAAGCATGACTCGACTGATAAGGAGAGGATGCGGAAGCAGGCTCGACCGTAAGGGAGAGGATG
CCCCCGGCAGGGCTCGACTAACAGGAGAGGAATTGGAAGCTTTGGGGGGTGACTTATTTAGAGGG
GCCACAAAATAAGTAAACCAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGACTACCCCTTTC
TTCGAATAAGAAAATACAGAGATCCTTCTCATATAGATGGGTACTTCTATCAGGCAGGAAGGCTT
CCCCTAAATTCAAATCAAAATGAGAGGGAGGGCAAGAAAATAAGGAAGGCCCGGCCGCCAGCGTA
ACACCTACTGACCGATAACCAGCAGCTGTCTGGGAATTTCCATTCTTCGCCACGGAACGAACCAC
CCTTTATTGGAATAGAAGGAGTAGTAGGAAAGGGGAACTGAAGAGAAGAACCGTCCCACTTCACA
AAATGTGAGGGAATTTGTGCAACTACGATCGATCTATAGTGAGTG
Found at i:217843 original size:32 final size:33
Alignment explanation
Indices: 217785--217861 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 33
217775 CTCGACCAAC
* *
217785 GGGAGAGGATGCGTAAGCATGACTCGACTGATAA
1 GGGAGAGGATGCGGAAGCATGACTCGACCG-TAA
*
217819 -GGAGAGGATGCGGAAGCA-GGCTCGACCGTAA
1 GGGAGAGGATGCGGAAGCATGACTCGACCGTAA
217850 GGGAGAGGATGC
1 GGGAGAGGATGC
217862 CCCCGGCAGG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
31 3 0.08
32 19 0.49
33 17 0.44
ACGTcount: A:0.30, C:0.16, G:0.42, T:0.13
Consensus pattern (33 bp):
GGGAGAGGATGCGGAAGCATGACTCGACCGTAA
Left flanking sequence: Indices 217285 -- 217784
ACCTTCCCTGAGCTACGACGCGAACAGACAGAAGGTCCTGAAGCTCTCACTTACCAGCTAGAAGG
TAAGGCCTTGACCAACCGGTAAAGGCCCGATCAACCCTTCACATTTTCACCCGGGTTGTGGATTT
ACCTCTAGCGAACTTCCCAAGATCAAGACTTATAGCTAGAAGGCCTTGTCTTATGGAGGGCCTAA
TTCACCCTGCTATTACCCTATCCTTATAAAGGAAAAAACCCCTATTGACTTATTTGGTGGGGGGC
CGGTCGAGAGTTCGCTTACTCACCCTGCTATTTGTCTTTTACCCGAGTTAGGCCAACCGCCATAA
AGGTCCCCCGTATTGACCTACTTGGCTTGGTAAGTATTGAAATAGACTCTGAATTGACGAACGGA
GAGAAACGGAGTCGCTCTAAAGACCAGAGGAAGAATTGCTCGTCCTAATCAAGTGGGGCGAGGAT
GCGCAAGCAGGCTCGACCAAAGGGAGAGGATGTGGCTCGACCAAC
Right flanking sequence: Indices 217862 -- 218361
CCCCGGCAGGGCTCGACTAACAGGAGAGGAATTGGAAGCTTTGGGGGGTGACTTATTTAGAGGGG
CCACAAAATAAGTAAACCAAGGTCCGGAGGGCTTGCGCTTCTGAGGGCAAGGACTACCCCTTTCT
TCGAATAAGAAAATACAGAGATCCTTCTCATATAGATGGGTACTTCTATCAGGCAGGAAGGCTTC
CCCTAAATTCAAATCAAAATGAGAGGGAGGGCAAGAAAATAAGGAAGGCCCGGCCGCCAGCGTAA
CACCTACTGACCGATAACCAGCAGCTGTCTGGGAATTTCCATTCTTCGCCACGGAACGAACCACC
CTTTATTGGAATAGAAGGAGTAGTAGGAAAGGGGAACTGAAGAGAAGAACCGTCCCACTTCACAA
AATGTGAGGGAATTTGTGCAACTACGATCGATCTATAGTGAGTGCCTGCCCTATCTATGCAATGG
ATGCAACCCAATCCCCTTCCTTCTTCGCTACTCGTGATAATGAAG
Found at i:222527 original size:39 final size:38
Alignment explanation
Indices: 222444--222532 Score: 99
Period size: 38 Copynumber: 2.3 Consensus size: 38
222434 GACTTAGGAA
* * *
222444 CACTAAACTCTAATCACTTTAACTAAACTTAGCTCCTCT
1 CACTAAACT-TAATCAATATAACTAAACTTAGCTACTCT
* *
222483 CACTAAACTTCATCAATATAACTAAACTTGGCTAACTC-
1 CACTAAACTTAATCAATATAACTAAACTTAGCT-ACTCT
222521 CAACTAAACTTA
1 C-ACTAAACTTA
222533 GCTCAAGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
38 21 0.50
39 21 0.50
ACGTcount: A:0.38, C:0.28, G:0.03, T:0.30
Consensus pattern (38 bp):
CACTAAACTTAATCAATATAACTAAACTTAGCTACTCT
Left flanking sequence: Indices 221944 -- 222443
GAAGTGCTCACCCAGGTAGACTTATATACTTCAAGGAGAGGTTGTGTAATGGCCATTAAGGCTGG
CTTTTAGGCTGGCTTTCCTGTACAGTCATTCTCGTCAATACGCTCGTCAAAAGGATGGAGCTCGT
CAATGTGCGGAAAGGGCGGAAAAGAGAAGAAAAGAAATTCCGGTTATTGATTTGGTTTGAGGGGA
ATTTTGTCAGGGCCTGAAATACATCACAGGGCGTTAGCGAAGAAGATTGCTTGTCTCTTACTGCG
ACCCCGTTTGTGTTATCACGTTATAAATACTTACCTTCCATAATGCGCTTTGGCCGGTTACAAAC
GATCAGTTCATGATTACAACTGACTAGACTCAAGAGATATCTTACAAATCTACTCTCTTAGGAAC
AATAGAAATAATAAGCTTATCTCCATTAGTCTTATAGGGTTAATAAGCTTTAGGAATCTTAGGAG
CAATCTGAGACTTTACTAATACTGAACTTAGACTAGACTTAGGAA
Right flanking sequence: Indices 222533 -- 223032
GCTCAAGCAACAGGAATCTATCTCAAGGAACAACAACAACAACAATGACTATCATCTCATAAAAA
CAAACGATCATCACTAAGACAAATCAACGAGAACATAAGCCCGGCGACATCACACACGTGGATAG
CCAACAACACGGCTTAAACTGAGGGTTTTACCAAGACAACTACCCAGACTAGACTTTTCATTTAC
TTTGAGATATTTTCTTTCATTGTTTAAGAAAATGAGACTATTGTTTCATAACCATGATATTAGTC
CTCTTAGTATGACCCGATACTCCTGGCAAATCAACTGCCAACAGCAGGTCGTCGTGGATATTATG
TAATCTCCACTGGTGGTTTACCTTGTTATTGACCAGGAACCTATTGACCTAGTGAAAGCAGTCAC
AAAGCAAGAAGCATATCCTGTTCCAGTGGACTCAGTTGATTCAGTAGTTCCAAGAGCAGCAGCAA
CCATTGAACCAGTGAATGTGCTAGTAAGGGTCAAGCCCGTTGATC
Found at i:225991 original size:24 final size:24
Alignment explanation
Indices: 225947--225992 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
225937 AGGCCATTCT
*
225947 GGTAAGGTCATCACTTATAGCTCA
1 GGTAAGGTCATAACTTATAGCTCA
*
225971 GGTAAGGT-ATAACCTTCTAGCT
1 GGTAAGGTCATAA-CTTATAGCT
225993 AGCGATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
GGTAAGGTCATAACTTATAGCTCA
Left flanking sequence: Indices 225447 -- 225946
AATAGCACCAATCATACGGGAGAAACACGAAAGAACAGTCGTAAACACACATAGAGAGACAGAGG
GAAGCACATATTGACAACGGGGGGAAGTACAACCGAATGGACACCCCTAAGCAACCAAACATCAT
CCGGAGCACATATCAGTCGGGAGGAGCAGATCAATCGGTGAACACAGGTAAGGAAGAGCATACAG
ATCCATGCAGGGACATAGATCCATCAGAAGAAGCACACATAACATCGGTGGAGCTACGCATCCTC
AGTCAGGAGTATACATTGATTGTAGGAGCAAAATGTGCAAAGACTTATTTCAAAAACACTTGGTA
ATTGCAATTAGTTATTTCAATATTATCTCAAGCTTGGTAATTGCAACATGTATCTATTATTTTGA
TTTAGCAAATTGTTCTTTTCATAGCCCATCAAGAAAAGTCGTTAGGCGAATACTTCTAAACATAA
GGCAAGGCCCTTACATGTTACAGGAAGGCATTGCAAGGCCATTCT
Right flanking sequence: Indices 225993 -- 226492
AGCGATTTGAGGGGAAGAAATCAAGGGCCAGGATACTCTTATATAAATCGCTAGCTATTTTTGGT
AAGACCAGGATACTATTTTATTCCCTCAATCTAGCTAGCGAAGGTAGAAGGGAAGGCACTATGGA
TCGATCGTAGTTGCCGTAACAAATTCACAAATCTGCTCTGCACCCGGGATAACAGAAAGAATTTG
TGTAGGCTAGATCTAGAGTGACAGAATTTTCATTCTGGCCTCCACAAATGAAATTCGGTCAAGTC
ATTCCCGGGATATAAATCCTTAACCCCCTCATCAGATTGGGGAACACACGAAACAAGGATATGAA
CTGGGTAAATGGAAATGGAAGAGAGATGTTTCCAATTCCGATTCGTTTTCCAAATCAGACGCTTT
TTCAACATCCATATGATCTACTAAAGTATATTGGTATTGCCCGTATGATGGAATAATATTTTGGC
TCATGGAGTCCCGAGAAGGTATAAACTCCGACCATATATTGCCCG
Found at i:229685 original size:26 final size:25
Alignment explanation
Indices: 229645--229693 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
229635 TCGACTGATA
229645 AGGAGAGGAGAGGGCCGCCATCGAG
1 AGGAGAGGAGAGGGCCGCCATCGAG
229670 AGGAGAGGGAGAGGGCCGCCATCG
1 AGGAGA-GGAGAGGGCCGCCATCG
229694 CCGCCATCGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.27, C:0.20, G:0.49, T:0.04
Consensus pattern (25 bp):
AGGAGAGGAGAGGGCCGCCATCGAG
Left flanking sequence: Indices 229145 -- 229644
CTATATGTGTGGATAGCGGCCCCGTTTGTTCGGGTGGAAGCCCTGCGAGTCCAGGGTTGCCTGGA
TTATCTCCAGGATGGAGCGTAAGAAGGCGGGATCCACATCCATAGCGTCATGTATCCCCCGCAGA
TAGGGAATATCGTTTTCTCTCGGAGAAAACAAGGGTAACTGTAGGAGTCGATCCACCAGCCGGAA
AAAGTGGACCCCCTCGCGTACTCCGAATCCTTTTGTCAAGATTAGCTTTAATCTTGACCGCAGTA
AGAGATCCAGCTCCCAGCGGTCGACGCATGTTCGGCGAAAAGCCCCCCCCCGAAAGGAGGTCGGC
CCAAGGATCTCTCAAACCTATTGCTAGGAAGCGATCCTCAGACCTAATAGTTTTCATCCGAAGCT
CCCCCGCTATCTCCCTCAAGGTTGAGGGGGGTAGCGAGAATCTGCGCAGGAACGCCGCCTCTTCG
GCGTTTATTCGACTGATAAGGAGAGGAGAGGGGGCTCGACTGATA
Right flanking sequence: Indices 229694 -- 230193
CCGCCATCGCCGCCATCGATTTCTCGCTCACCCATCATATGGGTGAGGGCCGCCTAAGGATGCGA
CAGCAGGCTCGACCACCGCCTTTTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAATTGAAC
CTTTCCGTTCGTTCTTAGGTCGGGTCGCCCTCCATTTCGATAAACCATTCTTGATACCATCTTGA
TACCACCAAGCCTTCTCGGATCGGTTCTACGAGAAAAGCTTTTTTCGTATCGGTGGTGCAGGGGA
CAAATTGATCACTCACTGAGAAGTGAAACCCTGTGACTATATCGTCCCGAAGACGGATGCGACGG
GAAGAAATGGCATTTGGAGGTGTTGCTGACTCCACATTTAGGTTTCGGCATGACACAGCTTGCAC
TGTCCTTTCGCACTTAGGCGCACAGCGTGCCGTCTCATTCGGTACAACCCCTCCCTTGGGGCCGT
AACCCCCGATTCCCCAGTAGCTGAGCCGCCCCCGAGGATATCCCC
Found at i:229698 original size:9 final size:9
Alignment explanation
Indices: 229684--229711 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
229674 GAGGGAGAGG
229684 GCCGCCATC
1 GCCGCCATC
229693 GCCGCCATC
1 GCCGCCATC
229702 GCCGCCATC
1 GCCGCCATC
229711 G
1 G
229712 ATTTCTCGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.54, G:0.25, T:0.11
Consensus pattern (9 bp):
GCCGCCATC
Left flanking sequence: Indices 229184 -- 229683
GCCCTGCGAGTCCAGGGTTGCCTGGATTATCTCCAGGATGGAGCGTAAGAAGGCGGGATCCACAT
CCATAGCGTCATGTATCCCCCGCAGATAGGGAATATCGTTTTCTCTCGGAGAAAACAAGGGTAAC
TGTAGGAGTCGATCCACCAGCCGGAAAAAGTGGACCCCCTCGCGTACTCCGAATCCTTTTGTCAA
GATTAGCTTTAATCTTGACCGCAGTAAGAGATCCAGCTCCCAGCGGTCGACGCATGTTCGGCGAA
AAGCCCCCCCCCGAAAGGAGGTCGGCCCAAGGATCTCTCAAACCTATTGCTAGGAAGCGATCCTC
AGACCTAATAGTTTTCATCCGAAGCTCCCCCGCTATCTCCCTCAAGGTTGAGGGGGGTAGCGAGA
ATCTGCGCAGGAACGCCGCCTCTTCGGCGTTTATTCGACTGATAAGGAGAGGAGAGGGGGCTCGA
CTGATAAGGAGAGGAGAGGGCCGCCATCGAGAGGAGAGGGAGAGG
Right flanking sequence: Indices 229712 -- 230211
ATTTCTCGCTCACCCATCATATGGGTGAGGGCCGCCTAAGGATGCGACAGCAGGCTCGACCACCG
CCTTTTAGTTACTTATTTGAGAGGGGCACCCAATAAGTCAATTGAACCTTTCCGTTCGTTCTTAG
GTCGGGTCGCCCTCCATTTCGATAAACCATTCTTGATACCATCTTGATACCACCAAGCCTTCTCG
GATCGGTTCTACGAGAAAAGCTTTTTTCGTATCGGTGGTGCAGGGGACAAATTGATCACTCACTG
AGAAGTGAAACCCTGTGACTATATCGTCCCGAAGACGGATGCGACGGGAAGAAATGGCATTTGGA
GGTGTTGCTGACTCCACATTTAGGTTTCGGCATGACACAGCTTGCACTGTCCTTTCGCACTTAGG
CGCACAGCGTGCCGTCTCATTCGGTACAACCCCTCCCTTGGGGCCGTAACCCCCGATTCCCCAGT
AGCTGAGCCGCCCCCGAGGATATCCCCCCAATCGATGGGGGAGTA
Found at i:231068 original size:30 final size:30
Alignment explanation
Indices: 231032--231143 Score: 224
Period size: 30 Copynumber: 3.7 Consensus size: 30
231022 CAAGCCCTGG
231032 ACCTTGCCCGGTGCGGACAAGCAATCAATT
1 ACCTTGCCCGGTGCGGACAAGCAATCAATT
231062 ACCTTGCCCGGTGCGGACAAGCAATCAATT
1 ACCTTGCCCGGTGCGGACAAGCAATCAATT
231092 ACCTTGCCCGGTGCGGACAAGCAATCAATT
1 ACCTTGCCCGGTGCGGACAAGCAATCAATT
231122 ACCTTGCCCGGTGCGGACAAGC
1 ACCTTGCCCGGTGCGGACAAGC
231144 GACTACGTTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 82 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (30 bp):
ACCTTGCCCGGTGCGGACAAGCAATCAATT
Left flanking sequence: Indices 230532 -- 231031
ATTCCAGAGAAACCACTTCGTTAGGATTGGGGAATTGCTGCAATTCCCTCTGAATAGCTCCGATT
CTCCCGTCGAAAATCGCTTTGGAAGTATTACCAAAACTCCTCTGAATAAATATGAGAAAGCCTAT
GGAACGACGAGCTACTATCGTTTCTTCATTACATATTGAGATCCCCTTCGAACTTAAGACACGAA
TGAATGGAATAGCAGCAAATGGCATATTTCCCTCCTTCGTATTCGTGGAACTCAATATCGTTTGT
CAACGTCATCATGACTCTTTTAGCAACTGAACGGAAGAGAAAATCCATGCCCCCGGAGGGACAAG
CGGCTTCGCACCATTAGATATTCTATTCATTATGGTCGCAGAGATAAGCTTAGGGTTGGACCTCC
CAGCAGCGACCCGCATTTCTCCACCCATACTCCTTAAAGAAAGTGAAGAAGGTTCTCCCTTTCGC
TCAGGTCAGGTTCTCCTTGCTTTCCTAACGTCAAGCAAGCCCTGG
Right flanking sequence: Indices 231144 -- 231643
GACTACGTTCCTCTCCCGTTGGTCGAGAGTTCGGCAGGCTCACCCTTACCTTACCTTCTAGCTCT
TTTAGGGGAATAAAGAAAGGGGACCTTACCTTCTATAAGGTACAGGATACTCTTTTTTATCTCAA
TCTAGCTCAGGCTTTTAGGGTAGGAAATAGAGAAGTGGGGGCCTTCTTATTCGGGGGGGCCTTTG
GATGAATTTATTGGATACCCGAGAAACATAATCTTTCAAAGAAACAGCTTCTACGGCGATAGATA
GGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAACAGTATGGGAGCCTCTCGGCTCGTACT
GCTCACACTCCCGGATCTTAACCCAGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGC
ATCTCTGCCCCCTGCCCTCCAAACAGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGA
TCTTAACCCTTGGGTAACCCTCCTCCACCCACCATAGTGTGAGAA
Found at i:231580 original size:115 final size:115
Alignment explanation
Indices: 231378--231607 Score: 460
Period size: 115 Copynumber: 2.0 Consensus size: 115
231368 AATCTTTCAA
231378 AGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAAC
1 AGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAAC
231443 AGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCC
66 AGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCC
231493 AGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAAC
1 AGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAAC
231558 AGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCC
66 AGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCC
231608 TTGGGTAACC
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 115 1.00
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23
Consensus pattern (115 bp):
AGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAAC
AGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCC
Left flanking sequence: Indices 230878 -- 231377
TCTATTCATTATGGTCGCAGAGATAAGCTTAGGGTTGGACCTCCCAGCAGCGACCCGCATTTCTC
CACCCATACTCCTTAAAGAAAGTGAAGAAGGTTCTCCCTTTCGCTCAGGTCAGGTTCTCCTTGCT
TTCCTAACGTCAAGCAAGCCCTGGACCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCCCGG
TGCGGACAAGCAATCAATTACCTTGCCCGGTGCGGACAAGCAATCAATTACCTTGCCCGGTGCGG
ACAAGCGACTACGTTCCTCTCCCGTTGGTCGAGAGTTCGGCAGGCTCACCCTTACCTTACCTTCT
AGCTCTTTTAGGGGAATAAAGAAAGGGGACCTTACCTTCTATAAGGTACAGGATACTCTTTTTTA
TCTCAATCTAGCTCAGGCTTTTAGGGTAGGAAATAGAGAAGTGGGGGCCTTCTTATTCGGGGGGG
CCTTTGGATGAATTTATTGGATACCCGAGAAACATAATCTTTCAA
Right flanking sequence: Indices 231608 -- 232107
TTGGGTAACCCTCCTCCACCCACCATAGTGTGAGAAACAGAGCCAGGCTTACTACAACCTGCCTG
ACTGACTGATAGATAGGCGTCGTGGTTCAAACAAACTATGGTACCTGCTTAGCTTAGCCCGAATG
CCCCCACTGATCATTGGTGAGATCCGATCCCCTCTATTGAATGGGGTCCCGGCTCGTTCCTCACC
TTTTCCGGATGATGCATCTCCACGAAGATCCACTATTTTTAGACCCGCACAATCCCTCACCCATC
GGAATGAGTGAGTGACCCCTCACCATATGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGT
GGCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTA
CCGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAA
Found at i:231907 original size:26 final size:26
Alignment explanation
Indices: 231869--231933 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
231859 TCACCCATCG
231869 GAATGAGTGAGTGACCCCTCACCATAT
1 GAAT-AGTGAGTGACCCCTCACCATAT
231896 GAATAGTGAGTGACCCCTCACCATAT
1 GAATAGTGAGTGACCCCTCACCATAT
231922 GAATAGTGAGTG
1 GAATAGTGAGTG
231934 GCTCCGCCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 34 0.89
27 4 0.11
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (26 bp):
GAATAGTGAGTGACCCCTCACCATAT
Left flanking sequence: Indices 231369 -- 231868
ATCTTTCAAAGAAACAGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGC
CCTCCAAACAGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCCAGAAAC
AGCTTCTACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAACAGTATG
GGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCCTTGGGTAACCCTCCTCCACCC
ACCATAGTGTGAGAAACAGAGCCAGGCTTACTACAACCTGCCTGACTGACTGATAGATAGGCGTC
GTGGTTCAAACAAACTATGGTACCTGCTTAGCTTAGCCCGAATGCCCCCACTGATCATTGGTGAG
ATCCGATCCCCTCTATTGAATGGGGTCCCGGCTCGTTCCTCACCTTTTCCGGATGATGCATCTCC
ACGAAGATCCACTATTTTTAGACCCGCACAATCCCTCACCCATCG
Right flanking sequence: Indices 231934 -- 232433
GCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATAAAGTAGT
AGGGGCGATGGCGGCCCCCCTCTCCCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGC
TCCGCCCCTAAGTAAGAAATATAGGGCCCTCTATTTTGGGAAAATAGAGCGATAAATCGATAGAT
AATAGGGCGGAGCGTTTGGTGGGTGGGTTACTTTATTTAGTGGATAAAAGCAGCAAGGACGCCTT
TTTATTGGCGCCGCAGGGAATGTCGAGAAACCTGCCGACCAATGGGATCGTTCGGAAGCTTGCTG
TAAATCCGGGGGATGTGACGCCCCAGGATTGAGAAGGACACCCCT
Found at i:231976 original size:27 final size:27
Alignment explanation
Indices: 231940--231998 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
231930 AGTGGCTCCG
231940 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
231967 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
231994 CCCCT
1 CCCCT
231999 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 231440 -- 231939
AACAGTATGGGAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCCAGAAACAGCTTC
TACGGCGATAGATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAACAGTATGGGAGCC
TCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCCTTGGGTAACCCTCCTCCACCCACCATA
GTGTGAGAAACAGAGCCAGGCTTACTACAACCTGCCTGACTGACTGATAGATAGGCGTCGTGGTT
CAAACAAACTATGGTACCTGCTTAGCTTAGCCCGAATGCCCCCACTGATCATTGGTGAGATCCGA
TCCCCTCTATTGAATGGGGTCCCGGCTCGTTCCTCACCTTTTCCGGATGATGCATCTCCACGAAG
ATCCACTATTTTTAGACCCGCACAATCCCTCACCCATCGGAATGAGTGAGTGACCCCTCACCATA
TGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 231999 -- 232498
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATAAAGTAGT
AGGGGCGATGGCGGCCCCCCTCTCCCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGC
TCCGCCCCTAAGTAAGAAATATAGGGCCCTCTATTTTGGGAAAATAGAGCGATAAATCGATAGAT
AATAGGGCGGAGCGTTTGGTGGGTGGGTTACTTTATTTAGTGGATAAAAGCAGCAAGGACGCCTT
TTTATTGGCGCCGCAGGGAATGTCGAGAAACCTGCCGACCAATGGGATCGTTCGGAAGCTTGCTG
TAAATCCGGGGGATGTGACGCCCCAGGATTGAGAAGGACACCCCTAGCTCTTCATCCACGATAAA
CGAGGCTGTTGCCTTAACCCGTGGAATTTCAATTTACCTTGACGG
Found at i:232008 original size:27 final size:27
Alignment explanation
Indices: 231950--232020 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
231940 CCCCTCTCCT
*** *
231950 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
231977 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
232004 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
232021 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 231450 -- 231949
GAGCCTCTCGGCTCGTACTGCTCACACTCCCGGATCTTAACCCAGAAACAGCTTCTACGGCGATA
GATAGGGGTCAGGTTTGGCATCTCTGCCCCCTGCCCTCCAAACAGTATGGGAGCCTCTCGGCTCG
TACTGCTCACACTCCCGGATCTTAACCCTTGGGTAACCCTCCTCCACCCACCATAGTGTGAGAAA
CAGAGCCAGGCTTACTACAACCTGCCTGACTGACTGATAGATAGGCGTCGTGGTTCAAACAAACT
ATGGTACCTGCTTAGCTTAGCCCGAATGCCCCCACTGATCATTGGTGAGATCCGATCCCCTCTAT
TGAATGGGGTCCCGGCTCGTTCCTCACCTTTTCCGGATGATGCATCTCCACGAAGATCCACTATT
TTTAGACCCGCACAATCCCTCACCCATCGGAATGAGTGAGTGACCCCTCACCATATGAATAGTGA
GTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCT
Right flanking sequence: Indices 232021 -- 232520
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATAGT
GAGTGGCTCCGCCCCTAAAGAATATAGGGCCCTATAAAGTAGTAGGGGCGATGGCGGCCCCCCTC
TCCCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTAAGTAAGAAATAT
AGGGCCCTCTATTTTGGGAAAATAGAGCGATAAATCGATAGATAATAGGGCGGAGCGTTTGGTGG
GTGGGTTACTTTATTTAGTGGATAAAAGCAGCAAGGACGCCTTTTTATTGGCGCCGCAGGGAATG
TCGAGAAACCTGCCGACCAATGGGATCGTTCGGAAGCTTGCTGTAAATCCGGGGGATGTGACGCC
CCAGGATTGAGAAGGACACCCCTAGCTCTTCATCCACGATAAACGAGGCTGTTGCCTTAACCCGT
GGAATTTCAATTTACCTTGACGGATTACTTCGAAGGCCTTATAAC
Found at i:238484 original size:16 final size:16
Alignment explanation
Indices: 238456--238489 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
238446 GATTAAAGCA
238456 CTCCTCACTCATTCAG
1 CTCCTCACTCATTCAG
238472 CTCCT-ACTCCATTCAG
1 CTCCTCACT-CATTCAG
238488 CT
1 CT
238490 TCTAAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.18, C:0.44, G:0.06, T:0.32
Consensus pattern (16 bp):
CTCCTCACTCATTCAG
Left flanking sequence: Indices 237956 -- 238455
TTCCCTAAGTAAACTCGATTTTTTCCTATCGGAGTTGCTTGCCCCAAAGCTCTGAAGATATAGTT
CAGCCCGTTTGGATTGCTAAGTGGAACAGTAATTGAAGCCTTCGTAACGCCCACTTCGCTTTCTC
AAATTCCCACCAGTTCAGGGAAGGAAGAAGGAAGGATTGCCAGCAACTTCCCTTAAGCCCACTTC
TGTTAGGGTCCCATCTTTATAGAGCCACCAGTGAAAACCTTTCTATCGTCTTGACCACGCCCACT
TTCAGTACTCAATTTCCCAGTTGAAATAGGCCAGTTCGCACCTTTCTATCATCTCCCGACGCCCA
CTTGGCTTTCTCAAATTCCCACCTTCCTTCGTTGGGCCAGGTGAACAAACATAACCTTCATCTTC
TTCTTCTTCAAGCTTCTCCCTCTCCTCCATTCAGTTTACATAATAAGGCTAGGGAAGTAAGATAA
GGCTACTCCTAATTAAGGAAGGCGGTAAGGAAGATGATTAAAGCA
Right flanking sequence: Indices 238490 -- 238989
TCTAAGATAAGGGTAGATAAGTAAGGATAAGCTGGACCCGTCCTCATTAAGCTAGGTAAGATAGG
GAAGCAACAAGGGTGGGCCAAACCAAAGTAGCTAAAGGTCAGGCCCGGAAGACTGTACTATACCG
GAAACAAATAGAAAGTTGAACGGTTTCACTTCAACCGGCCAATCAAAATATCGCCTTATTCCCAT
AGGGCAGGTACCATCGATTATATAACCAGGGGGGTTTGGGGGGCACTTTCGCCCATGCACTACTA
TCCTTAATAGGTTTTGAATAGAGGGCCCTATATTTATTACTTAGGGGTCACTCGACCATCGGGAG
AGGGACTGTACTACTGAGTTGGGTATAATTCTATTCTTGTTCTACTAGTGTGGGGAAGGTTTTCC
TAATCTCCCCGTCCTAAGTATTTGGAGCACTAGCAGATGATGAAGCAAAGCTCATTATAACACTC
GCTTATGCCTCCACAACATGAATTCTAGGTTCATCAGAAAATGTA
Found at i:239041 original size:7 final size:7
Alignment explanation
Indices: 239029--239090 Score: 51
Period size: 7 Copynumber: 9.1 Consensus size: 7
239019 CTTATTCCCT
239029 TCTCTTA
1 TCTCTTA
239036 TCTCTTA
1 TCTCTTA
*
239043 TTTCCTT-
1 TCT-CTTA
239050 TC-CTTA
1 TCTCTTA
*
239056 TTTC-TA
1 TCTCTTA
*
239062 TCTCTTT
1 TCTCTTA
239069 TC-CTTA
1 TCTCTTA
239075 TCTCTTA
1 TCTCTTA
239082 TCTCCTTA
1 TCT-CTTA
239090 T
1 T
239091 TTTCCTTTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
5 3 0.07
6 11 0.26
7 21 0.49
8 8 0.19
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.60
Consensus pattern (7 bp):
TCTCTTA
Left flanking sequence: Indices 238529 -- 239028
GTCCTCATTAAGCTAGGTAAGATAGGGAAGCAACAAGGGTGGGCCAAACCAAAGTAGCTAAAGGT
CAGGCCCGGAAGACTGTACTATACCGGAAACAAATAGAAAGTTGAACGGTTTCACTTCAACCGGC
CAATCAAAATATCGCCTTATTCCCATAGGGCAGGTACCATCGATTATATAACCAGGGGGGTTTGG
GGGGCACTTTCGCCCATGCACTACTATCCTTAATAGGTTTTGAATAGAGGGCCCTATATTTATTA
CTTAGGGGTCACTCGACCATCGGGAGAGGGACTGTACTACTGAGTTGGGTATAATTCTATTCTTG
TTCTACTAGTGTGGGGAAGGTTTTCCTAATCTCCCCGTCCTAAGTATTTGGAGCACTAGCAGATG
ATGAAGCAAAGCTCATTATAACACTCGCTTATGCCTCCACAACATGAATTCTAGGTTCATCAGAA
AATGTAGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCCT
Right flanking sequence: Indices 239091 -- 239590
TTTCCTTTCCTTTCCCCCCTTCCCCCTCCCCTAACCCCCTCCCTAGCCCTCGCTCCGCTTACGCT
CCGCTCCTAATCTTACCATATGATCCTCTGATCTCTGAACCTAATTCTCTGTACAATGATCCTTC
CTTTGTTTCGCTGATCTTTCCCTGGTTTTTCCAAAAAAAGAGAACAACACCTTCTTTTTTTTTTT
ATTCGGAAGGCGGACTACTGCCTTTTCTCTCTCTGAAAGAGCCGATCCGCAAAGATCCACGCTCT
GAAGAGAACACCTATCTCCCCCTATTTCTCTTATCTCTGAAGAGCCGATCCGCCAAAGGATCCAC
TCTCTGAAAGAGAGAACACCTATCTCTAACCGAACGCACTCTCTGGAAGAGAGAACACCTATCTC
TAACGGAACGCACTCTCTGAAAGAAGAAACCTATCTCTCCCTTCTTTTCTTTTCTTTCCATTGAA
AGAGGGCTTAATATCGACCAACCTGAGAGCTACGTTCTTCAAAAT
Found at i:239055 original size:20 final size:20
Alignment explanation
Indices: 239019--239088 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
239009 GTCCCATTGG
*
239019 CTTAT-TCCCTTCTCTTATCT
1 CTTATCTCCTTTC-CTTATCT
* *
239039 CTTATTTCCTTTCCTTATTT
1 CTTATCTCCTTTCCTTATCT
*
239059 C-TATCTCTTTTCCTTATCT
1 CTTATCTCCTTTCCTTATCT
239078 CTTATCTCCTT
1 CTTATCTCCTT
239089 ATTTTCCTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.38
20 20 0.48
21 6 0.14
ACGTcount: A:0.10, C:0.31, G:0.00, T:0.59
Consensus pattern (20 bp):
CTTATCTCCTTTCCTTATCT
Left flanking sequence: Indices 238519 -- 239018
AGCTGGACCCGTCCTCATTAAGCTAGGTAAGATAGGGAAGCAACAAGGGTGGGCCAAACCAAAGT
AGCTAAAGGTCAGGCCCGGAAGACTGTACTATACCGGAAACAAATAGAAAGTTGAACGGTTTCAC
TTCAACCGGCCAATCAAAATATCGCCTTATTCCCATAGGGCAGGTACCATCGATTATATAACCAG
GGGGGTTTGGGGGGCACTTTCGCCCATGCACTACTATCCTTAATAGGTTTTGAATAGAGGGCCCT
ATATTTATTACTTAGGGGTCACTCGACCATCGGGAGAGGGACTGTACTACTGAGTTGGGTATAAT
TCTATTCTTGTTCTACTAGTGTGGGGAAGGTTTTCCTAATCTCCCCGTCCTAAGTATTTGGAGCA
CTAGCAGATGATGAAGCAAAGCTCATTATAACACTCGCTTATGCCTCCACAACATGAATTCTAGG
TTCATCAGAAAATGTAGGAGAAAACCAATTGATTAGTCCCATTGG
Right flanking sequence: Indices 239089 -- 239588
ATTTTCCTTTCCTTTCCCCCCTTCCCCCTCCCCTAACCCCCTCCCTAGCCCTCGCTCCGCTTACG
CTCCGCTCCTAATCTTACCATATGATCCTCTGATCTCTGAACCTAATTCTCTGTACAATGATCCT
TCCTTTGTTTCGCTGATCTTTCCCTGGTTTTTCCAAAAAAAGAGAACAACACCTTCTTTTTTTTT
TTATTCGGAAGGCGGACTACTGCCTTTTCTCTCTCTGAAAGAGCCGATCCGCAAAGATCCACGCT
CTGAAGAGAACACCTATCTCCCCCTATTTCTCTTATCTCTGAAGAGCCGATCCGCCAAAGGATCC
ACTCTCTGAAAGAGAGAACACCTATCTCTAACCGAACGCACTCTCTGGAAGAGAGAACACCTATC
TCTAACGGAACGCACTCTCTGAAAGAAGAAACCTATCTCTCCCTTCTTTTCTTTTCTTTCCATTG
AAAGAGGGCTTAATATCGACCAACCTGAGAGCTACGTTCTTCAAA
Found at i:239072 original size:19 final size:20
Alignment explanation
Indices: 239032--239085 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
239022 ATTCCCTTCT
* *
239032 CTTATCTCTTATTTCCTTTC
1 CTTATCTCTTATCTCTTTTC
*
239052 CTTATTTC-TATCTCTTTTC
1 CTTATCTCTTATCTCTTTTC
239071 CTTATCTCTTATCTC
1 CTTATCTCTTATCTC
239086 CTTATTTTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.11, C:0.30, G:0.00, T:0.59
Consensus pattern (20 bp):
CTTATCTCTTATCTCTTTTC
Left flanking sequence: Indices 238532 -- 239031
CTCATTAAGCTAGGTAAGATAGGGAAGCAACAAGGGTGGGCCAAACCAAAGTAGCTAAAGGTCAG
GCCCGGAAGACTGTACTATACCGGAAACAAATAGAAAGTTGAACGGTTTCACTTCAACCGGCCAA
TCAAAATATCGCCTTATTCCCATAGGGCAGGTACCATCGATTATATAACCAGGGGGGTTTGGGGG
GCACTTTCGCCCATGCACTACTATCCTTAATAGGTTTTGAATAGAGGGCCCTATATTTATTACTT
AGGGGTCACTCGACCATCGGGAGAGGGACTGTACTACTGAGTTGGGTATAATTCTATTCTTGTTC
TACTAGTGTGGGGAAGGTTTTCCTAATCTCCCCGTCCTAAGTATTTGGAGCACTAGCAGATGATG
AAGCAAAGCTCATTATAACACTCGCTTATGCCTCCACAACATGAATTCTAGGTTCATCAGAAAAT
GTAGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCCTTCT
Right flanking sequence: Indices 239086 -- 239585
CTTATTTTCCTTTCCTTTCCCCCCTTCCCCCTCCCCTAACCCCCTCCCTAGCCCTCGCTCCGCTT
ACGCTCCGCTCCTAATCTTACCATATGATCCTCTGATCTCTGAACCTAATTCTCTGTACAATGAT
CCTTCCTTTGTTTCGCTGATCTTTCCCTGGTTTTTCCAAAAAAAGAGAACAACACCTTCTTTTTT
TTTTTATTCGGAAGGCGGACTACTGCCTTTTCTCTCTCTGAAAGAGCCGATCCGCAAAGATCCAC
GCTCTGAAGAGAACACCTATCTCCCCCTATTTCTCTTATCTCTGAAGAGCCGATCCGCCAAAGGA
TCCACTCTCTGAAAGAGAGAACACCTATCTCTAACCGAACGCACTCTCTGGAAGAGAGAACACCT
ATCTCTAACGGAACGCACTCTCTGAAAGAAGAAACCTATCTCTCCCTTCTTTTCTTTTCTTTCCA
TTGAAAGAGGGCTTAATATCGACCAACCTGAGAGCTACGTTCTTC
Found at i:239076 original size:13 final size:15
Alignment explanation
Indices: 239032--239090 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 15
239022 ATTCCCTTCT
*
239032 CTTATCTCTTATTTC
1 CTTATCTCTTATCTC
*
239047 CTT-TC-CTTAT-TT
1 CTTATCTCTTATCTC
239059 C-TATCTCTT-T-TC
1 CTTATCTCTTATCTC
239071 CTTATCTCTTATCTC
1 CTTATCTCTTATCTC
239086 CTTAT
1 CTTAT
239091 TTTCCTTTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 1 0.03
12 7 0.19
13 16 0.43
14 3 0.08
15 10 0.27
ACGTcount: A:0.12, C:0.29, G:0.00, T:0.59
Consensus pattern (15 bp):
CTTATCTCTTATCTC
Left flanking sequence: Indices 238532 -- 239031
CTCATTAAGCTAGGTAAGATAGGGAAGCAACAAGGGTGGGCCAAACCAAAGTAGCTAAAGGTCAG
GCCCGGAAGACTGTACTATACCGGAAACAAATAGAAAGTTGAACGGTTTCACTTCAACCGGCCAA
TCAAAATATCGCCTTATTCCCATAGGGCAGGTACCATCGATTATATAACCAGGGGGGTTTGGGGG
GCACTTTCGCCCATGCACTACTATCCTTAATAGGTTTTGAATAGAGGGCCCTATATTTATTACTT
AGGGGTCACTCGACCATCGGGAGAGGGACTGTACTACTGAGTTGGGTATAATTCTATTCTTGTTC
TACTAGTGTGGGGAAGGTTTTCCTAATCTCCCCGTCCTAAGTATTTGGAGCACTAGCAGATGATG
AAGCAAAGCTCATTATAACACTCGCTTATGCCTCCACAACATGAATTCTAGGTTCATCAGAAAAT
GTAGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCCTTCT
Right flanking sequence: Indices 239091 -- 239590
TTTCCTTTCCTTTCCCCCCTTCCCCCTCCCCTAACCCCCTCCCTAGCCCTCGCTCCGCTTACGCT
CCGCTCCTAATCTTACCATATGATCCTCTGATCTCTGAACCTAATTCTCTGTACAATGATCCTTC
CTTTGTTTCGCTGATCTTTCCCTGGTTTTTCCAAAAAAAGAGAACAACACCTTCTTTTTTTTTTT
ATTCGGAAGGCGGACTACTGCCTTTTCTCTCTCTGAAAGAGCCGATCCGCAAAGATCCACGCTCT
GAAGAGAACACCTATCTCCCCCTATTTCTCTTATCTCTGAAGAGCCGATCCGCCAAAGGATCCAC
TCTCTGAAAGAGAGAACACCTATCTCTAACCGAACGCACTCTCTGGAAGAGAGAACACCTATCTC
TAACGGAACGCACTCTCTGAAAGAAGAAACCTATCTCTCCCTTCTTTTCTTTTCTTTCCATTGAA
AGAGGGCTTAATATCGACCAACCTGAGAGCTACGTTCTTCAAAAT
Found at i:239456 original size:39 final size:39
Alignment explanation
Indices: 239413--239518 Score: 180
Period size: 39 Copynumber: 2.8 Consensus size: 39
239403 CCAAAGGATC
239413 CACTCTCTGAAAGAGAGAACACCTATCTCTAACCGAACG
1 CACTCTCTGAAAGAGAGAACACCTATCTCTAACCGAACG
* *
239452 CACTCTCTGGAAGAGAGAACACCTATCTCTAACGGAACG
1 CACTCTCTGAAAGAGAGAACACCTATCTCTAACCGAACG
239491 CACTCTCTGAAAGA-AGAA-ACCTATCTCT
1 CACTCTCTGAAAGAGAGAACACCTATCTCT
239519 CCCTTCTTTT
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 10 0.16
38 4 0.06
39 50 0.78
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (39 bp):
CACTCTCTGAAAGAGAGAACACCTATCTCTAACCGAACG
Left flanking sequence: Indices 238913 -- 239412
CAGATGATGAAGCAAAGCTCATTATAACACTCGCTTATGCCTCCACAACATGAATTCTAGGTTCA
TCAGAAAATGTAGGAGAAAACCAATTGATTAGTCCCATTGGCTTATTCCCTTCTCTTATCTCTTA
TTTCCTTTCCTTATTTCTATCTCTTTTCCTTATCTCTTATCTCCTTATTTTCCTTTCCTTTCCCC
CCTTCCCCCTCCCCTAACCCCCTCCCTAGCCCTCGCTCCGCTTACGCTCCGCTCCTAATCTTACC
ATATGATCCTCTGATCTCTGAACCTAATTCTCTGTACAATGATCCTTCCTTTGTTTCGCTGATCT
TTCCCTGGTTTTTCCAAAAAAAGAGAACAACACCTTCTTTTTTTTTTTATTCGGAAGGCGGACTA
CTGCCTTTTCTCTCTCTGAAAGAGCCGATCCGCAAAGATCCACGCTCTGAAGAGAACACCTATCT
CCCCCTATTTCTCTTATCTCTGAAGAGCCGATCCGCCAAAGGATC
Right flanking sequence: Indices 239519 -- 240018
CCCTTCTTTTCTTTTCTTTCCATTGAAAGAGGGCTTAATATCGACCAACCTGAGAGCTACGTTCT
TCAAAATTGGCCAGATTCTAGTGTTTTAGGAGGAGAATTTTCTTCGATTATATTATTATATGCTG
CACCAGTTTGAAATCAAGGATGTCTTTCTTTTTCAATGTGTAAACCAAAACCCAAGTGAAGAAAG
CTCCACCGTGCCGCCCCATTCCGCTGATGCCTTTCTTTTTCCAATGGTAACCAAACCAAGATGCC
TTTCTTTTGTCACAATGCCCTCACCATTATGAATAGTGGAGTGTGCTAACGCACCCTCTCCCCTC
CTCTTCAAATAAGTAACCCAAAGGCAGTCGAGTGTTGATTACGCACCTCACATATTGAATTAGTG
AGTGGCTCCGCCCCTAAGTCATATGGGCCCTTTCGAATGCCGGCAGCCTTCATATTCATATATTA
TATATGTCATTACGGTCATGATCGAATTCATGACGATCTTCCTGC
Found at i:243576 original size:13 final size:13
Alignment explanation
Indices: 243558--243584 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
243548 ATAGCCGATA
243558 AAGCGCCCACTAC
1 AAGCGCCCACTAC
243571 AAGCGCCCACTAC
1 AAGCGCCCACTAC
243584 A
1 A
243585 TGGATTGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.44, G:0.15, T:0.07
Consensus pattern (13 bp):
AAGCGCCCACTAC
Left flanking sequence: Indices 243058 -- 243557
GTAGTTTGTATGTCAAGTAGTAGATTGGTGTAAGGCTTGCCTGCAGAGTGTCGGGTTGGTGTGGG
TTCCAGTAAGTCTGCTTGATGTGGGGTTTGAATGTGTAGGTGAGAGTGTCTAAGGTTGGCATGGT
GAGGTAGGTTCTTTCTCTAGCAACGGGTGTTTCAAATAAGGCGGGTACCTACACATAACACGAGA
ATAATGTACAACTGCAGCTCTCTCCACTGCTTCTGGCTTTGAATCACCTGGCTTTGGATGCCACC
TTTGCTACCGGAACAGCATGCAATTCAACTGGATACTAGAGCATTTCTCCATTTGTAAGTCACAC
TATTGGATTGTATTGCAACACTGATCTCACCTCATAGTACCTGAAGGTACAACCCGCATCAAGGT
GGTATTCCAGGTTTATGGAGTCGAGGCATATAGGATTCTCCGGAATCTATGTCGTATTCTCGACC
GACCCGAAAGCTAACCATTAGACTCTATAGACCAAATAGCCGATA
Right flanking sequence: Indices 243585 -- 244084
TGGATTGGGCAACAAAGGATGGATCAACCGAATAGCAAAGGAACTTGGTCGGCTAATAGCGCCTC
CTTTCAAACAACAGGCGAAAAAAACTATACACCAGTCAGAAGCTAACGTCTACATTTTGACTAGG
AACTCACAGCATTCCACCAACCTTTAGGAACAAACGAACAGATGGAACTAAGCCACTCACAGTCT
ATTCACTTTCACTAAACCCCTTCTCCCTGTCTCTGAGCTATCTGCCCCGCCTAACCGGATGAAGC
AAAGGAAGGAGCATCCTAGCCATTATCGAGATTCATAGCCTCGCCCAGATTGAGTACCAGAGCCC
GTAGTTGAACCACTAGGAACAAAGTCAGTAGCTTAGCCTATTCTAGAGCCATTACCTCGCCCCGC
ATCTATCTTAGTTCGAAAGCCAATTCGAGATCGAGCAGCAATTTCACCTGCCAACTGGCGCGGAT
TCATTTATAGATCGAGTGTAAGTTCCAGTCCCTATAGCAGTTTCA
Found at i:244625 original size:24 final size:26
Alignment explanation
Indices: 244587--244636 Score: 86
Period size: 24 Copynumber: 2.0 Consensus size: 26
244577 ACTTACCCCC
244587 AGAGGAGAGAGGGACCCCATCACTGG
1 AGAGGAGAGAGGGACCCCATCACTGG
244613 AGAGGAGA-A-GGACCCCATCACTGG
1 AGAGGAGAGAGGGACCCCATCACTGG
244637 CTGAGAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 15 0.62
25 1 0.04
26 8 0.33
ACGTcount: A:0.32, C:0.24, G:0.36, T:0.08
Consensus pattern (26 bp):
AGAGGAGAGAGGGACCCCATCACTGG
Left flanking sequence: Indices 244087 -- 244586
ACCACGGGAAGAAGCAAGGGAAGCCTCTTGAGGTAATAATAAGTCTATGGAAGAAGCAGTGGTTA
GACACCCGATTGAAGTTCAAGCAGCAGTTCGAGATGTAATAGTGAAAGCTCCGATTATAGCCTGT
AGCATCCTTTCTTTCCTGTTCGACGGACTATTCTGCTGATGCTGCTGGCCGGAAGGAAGGTGCGG
CCAGGGGATAGGATATGAGTCATCCACCCACCATACGCGAGAGAAGTACTTAACCCCAGACTATG
AGAGGAGTTCCCCATCACTGGATACCTGCCACAAAAAAACCACATGGTATGGGGTCAACACTGTG
AGTGAGTCACACACCTCCCTTTTAGCTATAGCATAACACACCTCCCTTTTAGCTATGAACATCAC
ACTCATTACGATGAGCTATACCATACACCCATTTCACCATTGATACGCCGAACGATATTGATTAT
GTTCCCATGTTTCCACCAGACGGGAGAAGATATGTACTTACCCCC
Right flanking sequence: Indices 244637 -- 245136
CTGAGAAGAGAAGAAAGGACCACACGTTACCACCAGACGAGAGAAGATATGTCAAGTTTCCACCG
GACGAGAAAAGATATGTTCCCCAAGCTCCCAGACAATCAAGATGTTACCCATCAATGGAAAGGAT
ATTTCCCACATACCCCGGGACGGAGCTTACCCCTACGGAACAATAGGTTCCTACATCGAGACTGG
ATGCAATGACGACGATCGTTACATACGTCGATACACCCAGAGCTTCTATGTGTTTATGAGTGATA
GATGCTGCTTACTTGCTCGAATCAATTATAGTTGCTATTGTTTCTTGATCACTAGATTGGTCACA
AAAAATAGCCCACCCAGCACACCCATTCGTCGACCCACCATATGCGAGAGATTATGTTCCCCGTG
TTACCACCAGATGAGAGAGAGAAGGACCCGTTCAATCCAGACCCCGTTCAATATCATACCCCGTT
CAATATCATACCCATAGGGATAAAAGGCCCCACCACTGACTGGTT
Found at i:245089 original size:17 final size:17
Alignment explanation
Indices: 245053--245104 Score: 79
Period size: 17 Copynumber: 3.1 Consensus size: 17
245043 GAGAGAAGGA
* *
245053 CCCGTTCAAT-CCAGAC
1 CCCGTTCAATATCATAC
245069 CCCGTTCAATATCATAC
1 CCCGTTCAATATCATAC
245086 CCCGTTCAATATCATAC
1 CCCGTTCAATATCATAC
245103 CC
1 CC
245105 ATAGGGATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
16 10 0.30
17 23 0.70
ACGTcount: A:0.27, C:0.40, G:0.08, T:0.25
Consensus pattern (17 bp):
CCCGTTCAATATCATAC
Left flanking sequence: Indices 244553 -- 245052
TCCACCAGACGGGAGAAGATATGTACTTACCCCCAGAGGAGAGAGGGACCCCATCACTGGAGAGG
AGAAGGACCCCATCACTGGCTGAGAAGAGAAGAAAGGACCACACGTTACCACCAGACGAGAGAAG
ATATGTCAAGTTTCCACCGGACGAGAAAAGATATGTTCCCCAAGCTCCCAGACAATCAAGATGTT
ACCCATCAATGGAAAGGATATTTCCCACATACCCCGGGACGGAGCTTACCCCTACGGAACAATAG
GTTCCTACATCGAGACTGGATGCAATGACGACGATCGTTACATACGTCGATACACCCAGAGCTTC
TATGTGTTTATGAGTGATAGATGCTGCTTACTTGCTCGAATCAATTATAGTTGCTATTGTTTCTT
GATCACTAGATTGGTCACAAAAAATAGCCCACCCAGCACACCCATTCGTCGACCCACCATATGCG
AGAGATTATGTTCCCCGTGTTACCACCAGATGAGAGAGAGAAGGA
Right flanking sequence: Indices 245105 -- 245604
ATAGGGATAAAAGGCCCCACCACTGACTGGTTGACAGGAGAAGGCCCCCATCGTGACACCACAGT
GAAAACCCGTAGCACAGGCAAGCTCATCTTCATCTCCAGGGATAGCAAGATCGATAAGGCGAGAT
ACCACCTTCGGCAAGCAGCAAGTTCAATTGATCAGCAAGCAGTTAGGTGTGGAACTGCATCAGGT
GTAACTAACTGTGGTTCACTGTGGTACGGTTTCTATGCTTCACGATGAGTGCAATGGGTGGTCTG
TTTTGTGAGGTGAAAAGGTTTAGGAGGTCAATCTAAGATTAGGAGGGAGAGATAGAGAAACGGGT
ATAAATCTAGATACGTCCAGCCGGGTATAAAGATCTTCGATCTCAGGTGGCTAGATCCAGGTAAG
AGAGATCCATCCGGGTATAAATCTAGATCCGGATATCATAAATCGAAGTCTCGATCAGGTCGAAG
GCAGCAGTAAGATCGCTGAAGTTCTCTCTCAGGGGGGGAGGTCGC
Found at i:245750 original size:14 final size:14
Alignment explanation
Indices: 245731--245760 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
245721 GGTGAACAGC
245731 AGCATAATACGCAG
1 AGCATAATACGCAG
245745 AGCATAATACGCAG
1 AGCATAATACGCAG
245759 AG
1 AG
245761 ATCGATGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (14 bp):
AGCATAATACGCAG
Left flanking sequence: Indices 245231 -- 245730
AGATACCACCTTCGGCAAGCAGCAAGTTCAATTGATCAGCAAGCAGTTAGGTGTGGAACTGCATC
AGGTGTAACTAACTGTGGTTCACTGTGGTACGGTTTCTATGCTTCACGATGAGTGCAATGGGTGG
TCTGTTTTGTGAGGTGAAAAGGTTTAGGAGGTCAATCTAAGATTAGGAGGGAGAGATAGAGAAAC
GGGTATAAATCTAGATACGTCCAGCCGGGTATAAAGATCTTCGATCTCAGGTGGCTAGATCCAGG
TAAGAGAGATCCATCCGGGTATAAATCTAGATCCGGATATCATAAATCGAAGTCTCGATCAGGTC
GAAGGCAGCAGTAAGATCGCTGAAGTTCTCTCTCAGGGGGGGAGGTCGCAAGGTCGATCTAAGCA
TTTCGGGTATGCGATTTCACTGTGTGGACTGGAGGCGTAACAGTGTTGTGTTGTGACCAACTGGA
TGTGATGATAACTGTAGGTTGAACGTTGGACGTAAGGTGAACAGC
Right flanking sequence: Indices 245761 -- 246260
ATCGATGAAGCCCCTTTCAAGGTTCAGTCAATTAAGCAGTCGGTGAAGCACAAGTAGATCCAGTG
GGTTATCCAGTTGCTTAGCTTTATCCAGTAGATCCAGTCGTTGACCTAGCAGCAATACCAGCAGA
AGCTGTTTATGTATATGATCCATAAGTATATATAGGTTTAAGCGCACGTTTAAGCATCTTAACCA
GATCAAGATCCATACCCATCTCCATAGTGAGATCCATATCCAGTAGCTTAAGAACCAGTTGGAAT
GCAGCTGTTGATGTCGATTAAGCATAAGATCTAGCTTATCCAGCATAAGTAGCATAACTAGTTGG
AGTACCTGTTCCAGGTCCAGCAGCAAAGCAAGCAATCCGAAGCCAGCGATCTAATTCATCCCAGC
TAGGTAAGCCAGCAATCATTCTTCTGCCCACCCCCTAGCCGCCATCTAGCCAGCAGCCGCCCGCC
GCCATCAATTTAGCCAGCGGCAAGCCCGCCGTCAAGTTCATTGTC
Found at i:249134 original size:27 final size:27
Alignment explanation
Indices: 249117--249175 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
249107 AGGACCCTTT
* *
249117 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
* *
249144 AGGGGGCTCGACTGATAAGGAGAGGAG
1 AGGGGGCTCGACTGATAAGGACACGAG
249171 AGGGG
1 AGGGG
249176 CGGAGCCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.10, G:0.51, T:0.10
Consensus pattern (27 bp):
AGGGGGCTCGACTGATAAGGACACGAG
Left flanking sequence: Indices 248617 -- 249116
CGCGGTAGTAGTAGTATCGCTCCACCATTCTGATTATGGGGAGAAAGCTCAGGAAATGGCATAGT
TCAGGAAGAATCTTCATTTTAGATCCACGATGAGCGAGCTTATGTTTCATCGGACCTATAAAAAA
GATATTTTGACAAAGAATGCGTAAGCAGGCTCGACCACTATTTACCCACCCACCCCAATCCCCGG
ATGCGAAGCATGGCTCGACCAACCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAA
GGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGCGGAGCCACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTT
Right flanking sequence: Indices 249176 -- 249675
CGGAGCCACTCACTATTCATATGGTGAGGGGTCACTCACTATTCCGATGGTGAGGGTGCGTTAGT
ACACTCGACTGTCAAGGAGAGGGCCGGCAGGGTGAGGACCGGAGGGGCTCGACTGCTAAGGCCGC
CATCGATTTCTCGCTCATCCATCATATGGGTGAGGGTGAGCCTGTCGAACTCTCGACCTATGGGA
GAGGAATAATTGCTCACTCATTCATATGCCCACCACCCAATAAGCATCAAGGATAGCACACTCGA
CTGTCAAGGAGAGGAAGCGAACTCTCGACTAAAAGGCCGCCATCGCTCTCAATATAAGGAGAGGA
TGCGGAAGCAGGCTCGACCGCCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGTAAATTGAAA
TTGGAAGCTTGCTCGACAAAAGGAGAGCAAGGAAGGAACTACTTGTCCGCATCGGGCAAGGAAGG
ATGGGTATCCTGCTAAAGGGTTGTCCACGGAACTCCTTCTACTAT
Found at i:249218 original size:26 final size:26
Alignment explanation
Indices: 249182--249231 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
249172 GGGGCGGAGC
*
249182 CACTCACTATTCATATGGTGAGGGGT
1 CACTCACTATTCAGATGGTGAGGGGT
*
249208 CACTCACTATTCCGATGGTGAGGG
1 CACTCACTATTCAGATGGTGAGGG
249232 TGCGTTAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (26 bp):
CACTCACTATTCAGATGGTGAGGGGT
Left flanking sequence: Indices 248682 -- 249181
TCAGGAAGAATCTTCATTTTAGATCCACGATGAGCGAGCTTATGTTTCATCGGACCTATAAAAAA
GATATTTTGACAAAGAATGCGTAAGCAGGCTCGACCACTATTTACCCACCCACCCCAATCCCCGG
ATGCGAAGCATGGCTCGACCAACCTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAA
GGGCCCTCTCCCGGGGGTCGAGCGTTCGTTACCTCACCCTATATTCTTTAGGGGCGGAGCCACTC
ACTATTCATATGGTGAGGGTGCGTAAGCACACTCGACTGCCTTTGGTTACTTATTTGAGAGGAGG
GGAGAGGGTGCGTTAGCACACTCACTATTCATATGGTGAGGACCGGTAGGGGCTCGACTGTCAAG
GACCCTTTAGGGTGCGTAAGCACGCTCGACTAATAAGGACCCTTTAGGGGGCTCGACTGATAAGG
AGAGGAGAGGGGGCTCGACTGATAAGGAGAGGAGAGGGGCGGAGC
Right flanking sequence: Indices 249232 -- 249731
TGCGTTAGTACACTCGACTGTCAAGGAGAGGGCCGGCAGGGTGAGGACCGGAGGGGCTCGACTGC
TAAGGCCGCCATCGATTTCTCGCTCATCCATCATATGGGTGAGGGTGAGCCTGTCGAACTCTCGA
CCTATGGGAGAGGAATAATTGCTCACTCATTCATATGCCCACCACCCAATAAGCATCAAGGATAG
CACACTCGACTGTCAAGGAGAGGAAGCGAACTCTCGACTAAAAGGCCGCCATCGCTCTCAATATA
AGGAGAGGATGCGGAAGCAGGCTCGACCGCCGCCTTTTAGTTACTTATTTGAGAGCCCAATAAGT
AAATTGAAATTGGAAGCTTGCTCGACAAAAGGAGAGCAAGGAAGGAACTACTTGTCCGCATCGGG
CAAGGAAGGATGGGTATCCTGCTAAAGGGTTGTCCACGGAACTCCTTCTACTATTATATTGGGGT
TCAGCCCATAGAGGGTTGCCGCACCTTGTTCTACTTATGAATGGT
Found at i:249984 original size:12 final size:12
Alignment explanation
Indices: 249967--249993 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
249957 TCATACAAAG
249967 CATCCGTAAGGC
1 CATCCGTAAGGC
249979 CATCCGTAAGGC
1 CATCCGTAAGGC
249991 CAT
1 CAT
249994 ATCCATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.33, G:0.22, T:0.19
Consensus pattern (12 bp):
CATCCGTAAGGC
Left flanking sequence: Indices 249467 -- 249966
AAAGGCCGCCATCGCTCTCAATATAAGGAGAGGATGCGGAAGCAGGCTCGACCGCCGCCTTTTAG
TTACTTATTTGAGAGCCCAATAAGTAAATTGAAATTGGAAGCTTGCTCGACAAAAGGAGAGCAAG
GAAGGAACTACTTGTCCGCATCGGGCAAGGAAGGATGGGTATCCTGCTAAAGGGTTGTCCACGGA
ACTCCTTCTACTATTATATTGGGGTTCAGCCCATAGAGGGTTGCCGCACCTTGTTCTACTTATGA
ATGGTTCGGGGAAGAAGACTGACTTGCCCCCACCCCAATACATGGATAAAGCCTTGTTGACTCCT
CCATCGAACAGCCAAGCCAAGCTACTAACTGACCTACATCCATGGGCATAGACATAACTGCCCTA
ATCTTCTATAATCTTATATAAGTAATAATAGCATCAAGTGCAAGCCCCAACCGGAGGGGAAGGGT
TTAGGGGGCCGCCAAAGGTAAGTAAAGGGGCAGACTCATACAAAG
Right flanking sequence: Indices 249994 -- 250493
ATCCATATATATATGAATATAATGCGCGAAAAGGTCCTGTGTGTATCTATCTATAGGTTCGTTCA
GTTCCATATCTCGAACTTCAATAGGCTATGCTGCTTATAATGCTGCTTCCTTTCCCGCTGCTATC
ACCTTCTCTGCTGCTTGAACCATAACTGGGTATTGATCCCGATATGGAACCGGATCTGCTTCTCG
GTCAATTGGTTCTTCAGCTGCATGGTGGATATTATCCTGTTGATTGCTTGATCCCAGTGTCTTGG
TTGAATGGGTCGGTGGAATGGCAGAGCTATATCAGTGTAGATCCGTACCCCTAGCTTGGTGGATG
TTGATCGTATTACTCCCGGAATTCTTCACGGTGCCGGGGTATTCATATCGAAAACGCTGGAACCA
AGCGAGGGGATGCCCACGCCCTTATTGATGCTTGCTTTGATACTCCTGACTCTGCCTTAACTTCG
ACCCCCCGCCTCTATGGCCCCTGCCTATGGGTAAACTGAAATGGG
Found at i:251213 original size:26 final size:26
Alignment explanation
Indices: 251184--251233 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
251174 AGAGTAAGAT
*
251184 CCCTCACCATATGAATAGTGAGTGAC
1 CCCTCACCATAGGAATAGTGAGTGAC
*
251210 CCCTCACCATCGGAATAGTGAGTG
1 CCCTCACCATAGGAATAGTGAGTG
251234 GCTCCGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (26 bp):
CCCTCACCATAGGAATAGTGAGTGAC
Left flanking sequence: Indices 250684 -- 251183
ACCAATAAGGATGCTGGCTTTGCTCCTGTCTTATCTCACTACTTTACCCGTCCATCCATGCTACT
ACTTATAAATTATCCCTACCGGGGAGTTATGCTACTGGATATGAAATTGGCTCTGTAACTAATCG
AAAGGATGTTTACTCTGTTGCTTTTCCAACTACTGATGGATTTCGCTCATACAATGACCGGAGAG
CACCATAAACCTGCCCAGCTTTGTGGCCTATGACCCATAGCTTTTTGTTCGCACAGCAAATGAAG
ACCGGCTACAGGAGATGACTAATGCACTTCCGAGAAGGTTTCACCGCGAATGTAAGAAAGAGTGA
ACCCCTATATATCCATCTTATCTGTAAACACATGACAGGGAAGGACAAGGCATAGCAGCAGGCCA
AGACAGCTTTAGTCGCAGAAGTTCAGGCAGATCCAGATTCTATACTAGCTGCAGATTATTATGAA
GTAACAGGGACATAGATAGGGGCATAGTAGGCAGCAGAGTAAGAT
Right flanking sequence: Indices 251234 -- 251733
GCTCCGCCCCTAAATAATATAGGGCCCTTAGTTCGATAGCCCGTAGCAGCCCTTCTGGATCGAGA
TCGAGACCCGTAGCAACGCTTGAAACGGGAGCAGTAAAGATAGCAGCAGGAAAGGAGATTGACCT
TGTTGACCTAGAACCACCAGCACTAGGAGCATAGATAAAGGAAGCTAAAGCAAGGGTAGCAGGAG
CAGGACCGGGTGAAATGAATCCAAAACCAAAGGCAGTTTCTTACCAGCATCCGAACAAGCAGATG
CACCAGTAACAAGGGCAGTTAGGGCCACGGAGCTAAAGGCAGATCCTTCACCACTCGAAATTGGG
GTGCTTCCCTGCAGCCTTGAGCGAAACAAGAATGAGATGGATGGAATGATGAAAGGCGCTGCTTT
GATCAGTCTGTAGCTAGGAATAGGGGGTTTATAGTGCCACCTAGGTAGTTGACCTCATTGACTAA
TAAACAGTAGTGGAAGTAGCAGTGGCCCGGTTTACCCATCAGAAA
Found at i:252416 original size:13 final size:13
Alignment explanation
Indices: 252395--252428 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
252385 AAGAGCAGAG
*
252395 ATCCTTACCCTCT
1 ATCCCTACCCTCT
252408 ATCCCTACCCTCT
1 ATCCCTACCCTCT
*
252421 ATCTCTAC
1 ATCCCTAC
252429 TCGAGACTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.47, G:0.00, T:0.35
Consensus pattern (13 bp):
ATCCCTACCCTCT
Left flanking sequence: Indices 251895 -- 252394
AAAGGTAGCAGCATCAGAGGCAGGTGTAGTTCCAAAGCCCTTAGTCGCAGATCCAGTTCCATACC
CCCGTGAACTCACCATTGTACCCCGACCGATGAACCATTCCTTAGAGAGACAGAAGTCATATTGA
TCTATTTTATTATAATACGATGCGGTACCAAGGAAGAGAACCCAGTCACTTACCCATTGATTGGG
AGTGAGACCTTCATGTCGCCCTATTCCATCACTAGGGTAGATCAGGTAATTGCATTATATAACGA
TGCGGTGGTTTATGCCTAAATCCACCTCTACGTTCTCCAGCCGTCCTATGGGGAATATTCTTGAT
TGGTTGGCCGAGGCGCATCAAAGCCGAAGGAGCAGACTCTTCCTCATCCCCTCATATAACGTATA
ATGAATCCACTCACTATAGTTATAGTTGTTCATCCCAGACCAGAGCACAGCGCACACCCAACTTT
GCCTTTATTGAAGCGGGCACTACACTCATACAGGGAAGAGCAGAG
Right flanking sequence: Indices 252429 -- 252928
TCGAGACTCCCTACTCGACCCACCTCCCCCAACATTCAGGGTGGTTCCGCCTTTGAAAATAGATG
TTAACATATATAATATCAAATGACATATATAATATATGCATTTTCTGGTGTAATTACTGCCTTCC
TTGATGCTTATTGGGTGGCCCCTCTCAAATAAGTCACTAAGGTCGGAATGAGTGAGTGACCTCTA
TGAAGGAGTAGGGGCGATGGCGGCCCGGTGGTCGAGCCTGCTTGCGCACCCTCATCAAACAACCT
TTGACTGGAAGAGAGATTCTCTCCTATAAGGCAAGGGCTGTGGGGAAGCTGCTTATGTTGTTATT
GGTAATGCAAGCGCCTCTGGTGTCTTTACATAGGCATAAGCTTCTTCGGTAGCATCAGTTTACCC
TGTTTATCCATACCCAGTTCCGGGTGCAATTGATCCGGAGCCAGTGAATTACCCAGCAGATCATC
CAGTGGCATATACGGTTGAAGAACCAAAACCCATTGATTCACCAG
Found at i:253463 original size:20 final size:21
Alignment explanation
Indices: 253440--253478 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
253430 GGTTGATTGG
253440 GTAGCTAGCT-GGTCTCATCA
1 GTAGCTAGCTCGGTCTCATCA
*
253460 GTAGCTATCTCGGTCTCAT
1 GTAGCTAGCTCGGTCTCAT
253479 ATCCTCTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (21 bp):
GTAGCTAGCTCGGTCTCATCA
Left flanking sequence: Indices 252940 -- 253439
GAGGCAATTGATTGACTTGAATCAAAAATTGATTGAGTTTACCGAAAGTCTCTGTTCGAGTGGAT
CCAGATTCTATAAACCAGGTTAAAGCAACAACAGAAAGGATTCAAGCAGGAGAAAGGGTAGCTAA
GGTCAAGGGATCGCTCGCCTTCAGATTTGCCTTTGCTGCAATTTTGGACTATTTACAGATTATAT
GCAGCATACCCCCTGTTCCAGGTTCATGTCTTCGTGTACAGATACATAAGGTAGCGTCCCAGCTT
GTGCCATGAGAAGCAGATCCACCAACAGCGAACCGAGTTACGGATTCAGTTGACCGAGAAGCAGT
ATCACCGGTGGTTGACCCGCTACCTCGCCCAGCATCTCCCAAGGTTAGAAAGCCAGAAGCAAAGG
AAGCATCAGCTGTAGCTGTCCCACCTCTAGCTGTACCTGTATTACTTGTATCTGTACCTTTAGCT
GTCCCTGTACCTAAGTGTATGCTAAGTGTATGTCTGGTTGATTGG
Right flanking sequence: Indices 253479 -- 253978
ATCCTCTGGGTAGGGGGTTAGATAGCTTGTATGATTGATGGGTAGGGTTCTGGGGTTAACTAGCA
GGGATGTAGGGCTAGTTAAGTCTATCTAGCTTGTATGGTTAATTCATTGGGATCAGTCTAGCTTG
TCAGGTGAGTTCTCTTTCGATGGGTATGTATTGTTGTGTGGGTGATAGGATGTATAGGTAGCTTG
TATGGCTAGATAGCTTGTATAGATTGGTTGTAGGTAGGATTAGTACCATTCAAAGTATCACTCGT
AGTAAGTATCACAGTCTTACAAGCGCCGGCTCCCTTCGTCTCAATAAAGCGCTTGACGGAACGGG
AAGAGCAAGCAAGAAAACGGCCCCCTATATATTCCCCACGCATCTCGATTCCTAGCTGGGATGGA
AACAGTCATTGCTGGACTGGTGGGTTTATGGACTAGGCGGCTATTTGGTTTGGGACGGTCATACA
AACAAATTGAACCTAGAACCTATTCTTCGAACCTCTACATTACAT
Found at i:258979 original size:13 final size:13
Alignment explanation
Indices: 258961--258985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
258951 ATCTAGTGCT
258961 GTAGCAGTAAGCC
1 GTAGCAGTAAGCC
258974 GTAGCAGTAAGC
1 GTAGCAGTAAGC
258986 AGTTAGTCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.32, T:0.16
Consensus pattern (13 bp):
GTAGCAGTAAGCC
Left flanking sequence: Indices 258461 -- 258960
GCAGTCCATAGAAGCAAGTGCTAGGGCATATCAGCAATAGAAGTATGAGACAAGATCTTTTGGGG
TATTTTCCTTCCTATGTCTACTTAGATGTTTCAGTTCGCTAAGTCAAGTCCATACCCATTTTGAT
CTGTGACCGAAGTCAAAGACCCATTTTCGTGGATCGATCGCTTCGCTGCATCATTTTACCATTTC
TGTGATCCTCTTTCCTTGCACTAGGAAGCGCAAGCCCCTCCGGGACCTTATAATTCCCTAGCTTT
TTTTCTCTAGCCTCTGGCCAAACGTGATAGCGGCATCAGATTCATATCTCTATCCGTGCACCTAC
CTCACTCACACTCCTCTCTCGGGTATGGCCTGTGGGGTATGGATTTTCACGTATATAGACTTGCC
ATCATATATGTACTTCAGTGAACGTCTTTCTTTCCTGGATGTAACAGATGGGCTGGATCGAATTG
AATGGCTTTAGCATAACGTGTCCGCTTGAACTCCTATCTAGTGCT
Right flanking sequence: Indices 258986 -- 259485
AGTTAGTCGTATCCGTACTGTGTCGTTTCTGTCTCGATTCGTGTGCTCTTTCTTTTATATATCAA
GGGGTATCAATCTAGCTAGTTTGATCCGGTTTGATCTTACTTTGGGCACATACTTACTTCATGGC
ACAGTCATTCGTTCGTGACTGGAGGTAAGCAGTCTCTGGGAGGCTTAAATCAATTGATGGCGGCC
TGGCGGTCGAGCAAATATCTTCCTCACCCCTTCATAGAGCGCTCGTACCCGGTTCATTTGCTAGT
TCCAGGGTGGCGTATGCAGGGTAGAGTAACTAGTCATGTGTATTTCCTGACCTTGGCCTTACTTA
TATGGTCAATTAGAAAATATAAGGTGGCGTCGCGAATGCTTAATTTCTCATTGAACTGAGCAATC
GAAACTGGGAAATGAAATAGTTAAGGGATGGCCTATCGGGAGTGGGAAATTCAGGAAGATAAGGT
GGATTATGGAGGGTATGAAGTACAAGACCTATCAGACACATACCT
Found at i:260253 original size:9 final size:9
Alignment explanation
Indices: 260239--260265 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
260229 ATAACTCAAT
260239 TACTTGGTG
1 TACTTGGTG
260248 TACTTGGTG
1 TACTTGGTG
260257 TACTTGGTG
1 TACTTGGTG
260266 AAGCTGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.33, T:0.44
Consensus pattern (9 bp):
TACTTGGTG
Left flanking sequence: Indices 259739 -- 260238
TCACTGTGCACTGTTGGACCTACCCGTGTAGGTGCGCTGTGCCGTGTTGGTTACTGGTTTGCAGC
GACGAAGCCGTGCCGTCAAGTTATTCATCGGAAGGAAGGCAGCCAAGAGAGAAGGTCGAAGGAAA
GGTTCAATAAGCAGGATTCGAACGCAAGCTAGGAGAGGTAGGGAAAAAGGCCCCCGCACTCCACT
CAGCTTAGATAAGAAGGAAGGTAGAATAAGGATGGCTCACTCATTCATATGGGTGAGGAAGGATG
GCTTACCCGCTGCTCCTCACCATCAATTGTCCTATGTTCTTCAAATGCTTAATCAACGTAAGTAA
GTAAGTAAGTATATCGTAGGTGCTGCTTCTTTCTATGGCTCCTGGTCATCCTTTTTCCCTGTCCC
TCTCCCATGTAAGTCTGCCCCTCCCTCTCTGCTCTGTCTGTCGGGGTTATCTCTGTGGTCTCCTT
CCTTTGGACAACCGCTCTAAGAAGACAGGCCATAAATAACTCAAT
Right flanking sequence: Indices 260266 -- 260765
AAGCTGGTTATGAAGGCTAAAAAGGTGTCTTATTCGTGTATTTCCCAAAGACTGCTACAGGTGTT
CCAACAGACTCCAACAGGTTGTATTACTAATAGTCCTACTGCTTGCTACAGTTCATCCAACTGAT
TCTCCTTCCTGGTCCTACCTACTTACTGTACCTACAAGTTGTCCAACTGACTCTCCTGATCCGAC
TGGTCTGACTGGTCCAACTGGTCCATCCTACTGTTACTGCTCTTGCTCCTGCTCCAGGTCCAATC
GACTCTACTGGTCCTACTGCTACTGGTGGTCATCGAAGGCGGGCGATTGCATGTTACCTTTTCTC
TTTATCACGTCCCTGTTAATGAGGTGAGTTAGTCAGTGAGGAGAAGGGGCCAATAGATTGCACCA
AGCCGCCATCGACTCACTATTCATATGGTGAGGTATTTTATTGGGCCAAAGGGAGAGGAAAGAAG
TAAGTGGCTGCTGGTCATTATTTATATATGTAATTACGCTTTAGC
Found at i:267201 original size:14 final size:14
Alignment explanation
Indices: 267182--267208 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
267172 GGCTGGGCAA
267182 AATGTACGATCAGT
1 AATGTACGATCAGT
267196 AATGTACGATCAG
1 AATGTACGATCAG
267209 CTGGGCTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (14 bp):
AATGTACGATCAGT
Left flanking sequence: Indices 266682 -- 267181
TGTTGTCGTTTTGCATCCTAAGGGTCCCGCTTATCAAAAGGACGGTACTTAAAGAACAATTAGGT
TATTGAAGTTTGATTTCCCAGTTTATTAGTACCAGGACAAGGCCAGTCTACTTCGGGATAAATTA
CCAGACCATTGCCAGGCTCCTGCTGTAGTATTGACCAGTATAATGGCAGCTTCGTTAGGTCAATA
TTCCATCCCCAGAGATCCAACTTGGGGCAGCAACCCTCGAAATGTGATTTATCCCACCCACCTGA
ATAAAGGTCCACTCGATTTGCTCCGACCATAGGGAGACGGAAGGGGATTTGCTACTACTAATTAC
TACTGACTCGCTACGTAACGTATTCCCCGGTATGGGTTCACTTATCATTGGTATGGGTTCACTGC
CTACGTAACGTATTCCCCGACTAGCTACGTAACGTACTGTGCGTATGACTTTGAGGTGTCGGAGT
GCTTGCCTACCTAGAGCTTGGGATAAGGTCGAAAGGGCTGGGCAA
Right flanking sequence: Indices 267209 -- 267708
CTGGGCTAGTGGGGGCTAGGAAGATACATACTTTCGGGTTGAAGAGGTGGGAAAGGTCATCTACC
TGGCTGGTTTGTGGCTTCTCATGAAATATCGTTCGTTGCTTCTCATGAAATATCGCTTGATGTAT
CACTAAATATCTCAATCAATCTAGCTAGATTTACACGTTGAGGGTAGTAGTAGTTGTAGTAGTAG
TTATAGGCGTATGTTTCATTAGCTTATTCTATAGCTGATTCTATTCAGTTTGTAGTGTATTTCAA
TGTTGACCATAACGCTAAAGGACATAGTTAGTTGCTCGTCCTTGCCAGCTATGTGGATTGAATAA
GCCGATAGATGAAATGCCACGAGAATAGCCGATGCCACGAGAGACACAACCATTAGCTGATCCCT
CACCCAAGACACAAGGGGGCTGGCTACAAGGGGCTGGCTTGCCGCTCCTCCATTCATAGATATGC
CCTTGCCTTAGGATCCGCTTCAATGGAACCACCATTTTCATGCGT
Found at i:267633 original size:14 final size:15
Alignment explanation
Indices: 267609--267637 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
267599 CACCCAAGAC
267609 ACAAGGGGGCTGGCT
1 ACAAGGGGGCTGGCT
267624 ACAA-GGGGCTGGCT
1 ACAAGGGGGCTGGCT
267638 TGCCGCTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.21, G:0.45, T:0.14
Consensus pattern (15 bp):
ACAAGGGGGCTGGCT
Left flanking sequence: Indices 267109 -- 267608
TGTGCGTATGACTTTGAGGTGTCGGAGTGCTTGCCTACCTAGAGCTTGGGATAAGGTCGAAAGGG
CTGGGCAAAATGTACGATCAGTAATGTACGATCAGCTGGGCTAGTGGGGGCTAGGAAGATACATA
CTTTCGGGTTGAAGAGGTGGGAAAGGTCATCTACCTGGCTGGTTTGTGGCTTCTCATGAAATATC
GTTCGTTGCTTCTCATGAAATATCGCTTGATGTATCACTAAATATCTCAATCAATCTAGCTAGAT
TTACACGTTGAGGGTAGTAGTAGTTGTAGTAGTAGTTATAGGCGTATGTTTCATTAGCTTATTCT
ATAGCTGATTCTATTCAGTTTGTAGTGTATTTCAATGTTGACCATAACGCTAAAGGACATAGTTA
GTTGCTCGTCCTTGCCAGCTATGTGGATTGAATAAGCCGATAGATGAAATGCCACGAGAATAGCC
GATGCCACGAGAGACACAACCATTAGCTGATCCCTCACCCAAGAC
Right flanking sequence: Indices 267638 -- 268137
TGCCGCTCCTCCATTCATAGATATGCCCTTGCCTTAGGATCCGCTTCAATGGAACCACCATTTTC
ATGCGTTTTCTCGCCACTTGACCCCTAAATAAGGTGTTGATCCGTTATAATTGACCTTTCCATCA
ATCATGGAATGGTTGTTTGTTTCCGCCCAACCATTTGAAGGACACACAATTACGTAAATAATCAT
TGCATTAGACGGACTAGGCGTAACGTATTGAAAGCCAAGTAAGTAAGGCGTAGCATATTGAAAGC
TAGGCGTAACGGGCAGTTAATAAAAAGACCTTAGATCTTATATTATCCATTCATTATATATGAGC
TTACAGGCTATATATAAGGTATCAACTGCTTCATGCTATTAAGGTAAGGTCACGCCAGGGAAGTT
CGGCCTAGCGCCTCTGAAGTTCGGCCTAGCGCCAGGAAAGCCAGGCTAATTTTTTCACCTCGACA
GGGAGGAGGGAATTATCAGAGGGCAGCGGAGGTGTTCTGCGAAGC
Found at i:268350 original size:15 final size:15
Alignment explanation
Indices: 268330--268371 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
268320 AGCCTACCCT
268330 GAGAGTCATCAACTC
1 GAGAGTCATCAACTC
268345 GAGAGTCATCAA---
1 GAGAGTCATCAACTC
268357 -AGAGTCATCAACTC
1 GAGAGTCATCAACTC
268371 G
1 G
268372 CTCGGCTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
11 11 0.48
15 12 0.52
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (15 bp):
GAGAGTCATCAACTC
Left flanking sequence: Indices 267830 -- 268329
CATTGCATTAGACGGACTAGGCGTAACGTATTGAAAGCCAAGTAAGTAAGGCGTAGCATATTGAA
AGCTAGGCGTAACGGGCAGTTAATAAAAAGACCTTAGATCTTATATTATCCATTCATTATATATG
AGCTTACAGGCTATATATAAGGTATCAACTGCTTCATGCTATTAAGGTAAGGTCACGCCAGGGAA
GTTCGGCCTAGCGCCTCTGAAGTTCGGCCTAGCGCCAGGAAAGCCAGGCTAATTTTTTCACCTCG
ACAGGGAGGAGGGAATTATCAGAGGGCAGCGGAGGTGTTCTGCGAAGCCCGGGCCCGCTCTCCCC
ACCTTCAAGGACACACGAAAGACTCTTTCCTTTACGACTGGAAAGGAAGGACACACGCAGGAATC
AGGGAAGGTCTAAAGATGCGGGAACCTCACGTTAGTGGCTCGACCAATCGATAGGTTGAGGCACG
TCCCTTCCCTCTCTCAGGACCACTGGACTATTCGAAGCCTACCCT
Right flanking sequence: Indices 268372 -- 268871
CTCGGCTACCTTCCCAATTGTAGACATAACCCAAAGGAATAACCTCTTCTCTCATCCGAAGGAAA
CATATTCTCGAAAATTACCCTCAATCGATAAGGACAGAGTCCCATCCCTACCCACTCTAAGGTCA
GGGAAGGAAGGTCCGGAGGGTCTTGCGCTTCCGAGTGCAAGGATTTTCTTGACTGACCCACCAAT
ACTTTACCACCAATATCGACCAAGAACTTGAAAACCCACCAATCGAGCGTTAGCGAAACTACTTG
ACCAAGACCTTTTATTCACTTCCGCCACTTCCGCTTTTCACTTCTGCTTATCTGCTAATCCACTT
CCGCTTCTCCGCCTATTTATCCGCTTTTCCGCCCCCCCCTAAAGCTTGAGCTGGGATCGCCTTAT
TTTATTCAGAACTTCCAGTCTGTTTTCCCACAGAATAGAAATAAGGGGGCCTAGTCTTCGGTTCA
GCTCAGTTCAGCAAATCAGTTCAATTAAAGCTCCCAAAATAAGTG
Found at i:270789 original size:31 final size:31
Alignment explanation
Indices: 270751--270913 Score: 326
Period size: 31 Copynumber: 5.3 Consensus size: 31
270741 TCCCTAAAAA
270751 GGTGAGGGATTTCTCGCTCATCCATCATATG
1 GGTGAGGGATTTCTCGCTCATCCATCATATG
270782 GGTGAGGGATTTCTCGCTCATCCATCATATG
1 GGTGAGGGATTTCTCGCTCATCCATCATATG
270813 GGTGAGGGATTTCTCGCTCATCCATCATATG
1 GGTGAGGGATTTCTCGCTCATCCATCATATG
270844 GGTGAGGGATTTCTCGCTCATCCATCATATG
1 GGTGAGGGATTTCTCGCTCATCCATCATATG
270875 GGTGAGGGATTTCTCGCTCATCCATCATATG
1 GGTGAGGGATTTCTCGCTCATCCATCATATG
270906 GGTGAGGG
1 GGTGAGGG
270914 CCGCCATCAC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 132 1.00
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.31
Consensus pattern (31 bp):
GGTGAGGGATTTCTCGCTCATCCATCATATG
Left flanking sequence: Indices 270251 -- 270750
ACAAGAGCACCGATTGATGATTGATCGGATTTATTTACAACAGAAAGCCTAGTTGGGACAAGACA
AGGCGGGACGGAAGGAAGAAGGATTGATCACTGGCTAGACCGTGACGCTAGGTAAATGATTACGT
TAGGCTAGGTGATGAAATGTTACGCCGGCATAACACCCGCCATTAGAACAACAACAAGGGTTGTA
TATATTTTCAATCGCATTTAAGAGGCTTTTTCAAATTCGCGGACCAACCCCAGGGACGAAGTTAT
TGTCTTAGATTACTTATTGTTAGAGCTTTGCACAGGCGTTTGAAACCACTTGCCGGAGGAATCCT
TCATGGGTAGACACTATTGATCTTCTTGTCGGGCCGGGCTTAACCCCCAGATACGCTTTTAGGAA
TTAAAACAGACAGCATTGCTAGGATGCGCTTTAAGGCTCGACCATGAGGACCCGGTAGGGGGCTC
GACTGATAAGGCCGCCATCGATTTATCGCTCACCTTCCCTAAAAA
Right flanking sequence: Indices 270914 -- 271413
CCGCCATCACCTTTCTATGCCTACTTGATAAAGACTTTATGTCGGATGGACAGCTCACTCTTCAT
TGCCTAGGAATAACTACAGCCAGACAATATTGGAAGGGAGAAAGGCGCCAGCAGGGTTGAGGGGA
AGAAATGCATAATGACATATATAATGAGATCTATTTGTATACGATATTACGGGTACGATCGATGA
TTCGAGCTACGATCCCATACGACGCTAAAGCGTAATTACATATATAATAGATGCATTTCAGAATG
ACTTATCTATTTCATTACGCGATATTATATACGTAATTACGTATATAATTGCAGAGATCTCACCG
ACCAACCAAATAGTCTTTCATTTCATCCCAGGCGGGCACCATTGTAAGCCTCATGTTCAACACAC
GATTCCATTTGATGGCGTTGGTCGAGCCTGCTTGCGCATCGATTTTTTCATTCAAAAGAATATCT
TGTGACCCTCAGCTAACGTGCAAGCAGTAGTCCGGAAGCAACCCT
Found at i:274086 original size:16 final size:16
Alignment explanation
Indices: 274065--274095 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
274055 CACTTAAAGC
274065 AAGTCAGTCAGGCAGA
1 AAGTCAGTCAGGCAGA
274081 AAGTCAGTCAGGCAG
1 AAGTCAGTCAGGCAG
274096 GGCACAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.32, T:0.13
Consensus pattern (16 bp):
AAGTCAGTCAGGCAGA
Left flanking sequence: Indices 273565 -- 274064
AGGCAAGAAATTAGCTTTTAATTGATCAATTCTTCGATCGCGTAATTACGTATATAATGAAGCGT
CATGAACAGGCATACCAGGTTAGGCGTCACACCTTACTTACGAGCATGCCAGACTACGGCATCCC
ACCTACGGGGCCGAACACGCCGCCCAAAGTCTTCCTACGGCGAGTCGGCATTCTTATACTACTTG
GCTACGGAGCTTGAAACCTTCGACCGTTGATTGAGGGAAGGGAACCCACAGCTGGACCAAGCAAA
GGGACGTAAAGCTGGCTGGCTTATTTGTTCACTCGTTCATTCATAGGCGGCAGGCTCTCAAGATT
GGTTGGTTGATCGATCGATTCGCGTTCGAGTATGGTTATTATATGAGCATGTTGCGGCATGTTTT
ATGACGTTGTCTCAGGCTATACGTTGATTCAGAAGATGGTTTGTTTCCCCGCTACGATTCACCCG
TGATGGTCTCATGGCGTTCTATCAGGCAGGCAGGGCACTTAAAGC
Right flanking sequence: Indices 274096 -- 274595
GGCACAACAAGTGATGAATCAGTTGATGGTTTCATGGCGTTCTATCCCGGTTTAACATGTTACTA
CGTTCAGTCAGTTAACTGGCACAACCCAAACCTACCATTTCACCCCTGCCCTATATAAGCTCTAT
ATCAGCTCTACCTGAGGATTGGCTTTGGGATCGGATTGGCCCTGTTGGTCAATCATTGAACCGGT
CTCAGATGCCATTTTCCGCCTAAGCCTATTGATGAAAGGCCAATAGCGAGTCGCCAGGCTGCCGC
AAAGGTCAGGTGGCATCACAGCCCCACCATAAGCCTTCTATGAGCCCCATTAGCCCTCCAACCCT
TAGGAGGTCGGGTAAGCCTATGGAGGTTGGGTTTAGGCCCTATTAGCCCACCATAAGCCCGCTTG
ACCCTTGCCTGATGCGGACAAGCGATTTCATTCTTTTTTTCGCATTTCATCAGAGACGAAAACAT
GGTTTGACCTAAGCAGTTAGGTGGTCTATTCGAGTGATTCGAGTG
Found at i:274706 original size:17 final size:17
Alignment explanation
Indices: 274662--274700 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
274652 GCCTGTATCT
274662 GCATTCACCGTTCATAG
1 GCATTCACCGTTCATAG
274679 GCATTCACCGTTCATAG
1 GCATTCACCGTTCATAG
274696 GCATT
1 GCATT
274701 ACCCGTAGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (17 bp):
GCATTCACCGTTCATAG
Left flanking sequence: Indices 274162 -- 274661
GTTCAGTCAGTTAACTGGCACAACCCAAACCTACCATTTCACCCCTGCCCTATATAAGCTCTATA
TCAGCTCTACCTGAGGATTGGCTTTGGGATCGGATTGGCCCTGTTGGTCAATCATTGAACCGGTC
TCAGATGCCATTTTCCGCCTAAGCCTATTGATGAAAGGCCAATAGCGAGTCGCCAGGCTGCCGCA
AAGGTCAGGTGGCATCACAGCCCCACCATAAGCCTTCTATGAGCCCCATTAGCCCTCCAACCCTT
AGGAGGTCGGGTAAGCCTATGGAGGTTGGGTTTAGGCCCTATTAGCCCACCATAAGCCCGCTTGA
CCCTTGCCTGATGCGGACAAGCGATTTCATTCTTTTTTTCGCATTTCATCAGAGACGAAAACATG
GTTTGACCTAAGCAGTTAGGTGGTCTATTCGAGTGATTCGAGTGGTATATTCGTGAGGGCAAAGC
ATCTGCCTGTTTCCGCATTATCATAGCCTGTATCTGCCTGTATCT
Right flanking sequence: Indices 274701 -- 275200
ACCCGTAGGCATTCACTGTGCATAACCTTGCCTTACCTTTCGCCGGCGCAGGACCCGAAGAATTG
ACCTACCTACCTTTCAGGACCATCCGTGAAATCCTATAGATATTAGATAGTTCTATCGATGAGAT
AGATAGAAAAAGAAATATTAGTGGCGAAGAGAGGCATCGGGCCATGTGTCGATGTGATGTTCAAC
AATGTGAAAACCAAGTCTGGGCATCTCCTCATTCTCTGTCTCTGCACGAATCCATCTCCTCCATC
ATTCTCTAAACAGATTGGGTCGGAAACACAATACCTCTACTCATTCTATTTACTGGTCAGGTCGG
GTTGGCATGCTATACACGGGTCAGGTCGAGGCTAGCTAGGTGCTTATCCATATACAAATGACAGA
CACAGAGAGGGGCCAGCCAGGTAGGTGCTTATTTGGTTCGCCAAGCCGTTTAGGGGCGGGCTTCT
ACGTGCAGGAGGTGATGGTCCCGATCCTCATTCTCTATACCTACT
Found at i:275402 original size:13 final size:13
Alignment explanation
Indices: 275384--275421 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
275374 GCCCTCACGC
275384 CCTCACCCACCGA
1 CCTCACCCACCGA
*
275397 CCTCACCTACCGA
1 CCTCACCCACCGA
*
275410 CCTCACACACCG
1 CCTCACCCACCG
275422 GGTCCATCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.24, C:0.58, G:0.08, T:0.11
Consensus pattern (13 bp):
CCTCACCCACCGA
Left flanking sequence: Indices 274884 -- 275383
GTGATGTTCAACAATGTGAAAACCAAGTCTGGGCATCTCCTCATTCTCTGTCTCTGCACGAATCC
ATCTCCTCCATCATTCTCTAAACAGATTGGGTCGGAAACACAATACCTCTACTCATTCTATTTAC
TGGTCAGGTCGGGTTGGCATGCTATACACGGGTCAGGTCGAGGCTAGCTAGGTGCTTATCCATAT
ACAAATGACAGACACAGAGAGGGGCCAGCCAGGTAGGTGCTTATTTGGTTCGCCAAGCCGTTTAG
GGGCGGGCTTCTACGTGCAGGAGGTGATGGTCCCGATCCTCATTCTCTATACCTACTCAGCTGCA
GTGAGGGAAAACGTTTTGGAGAACAGTCATGAAGGTGCTGGTCCCGATCCTCATTCCAACCGACC
GATAGTGAGCCTTCGAATCCCTTTCCGATCCAGAAAGATAGTGATTCAAGCCCTCACCTACCACT
CTCACACACCTGGTCCATCCAGCATAGTTCTTCTTGCCCTCACGC
Right flanking sequence: Indices 275422 -- 275921
GGTCCATCCAGATAGTTCTTGTTCACCTACCCGGGACAGAAAGGGGATCTTAACTACGAGATGGA
GGTGGATATTAATTAGGGTCAAAGTTGGGGTGAAAGTCCGAGAAGTAGCAGTGGGAAGGAGCAGT
TTCATTATCTCTCACGTCTTGCCTTCCCGTGTTCTTGCCCGGACCGTTCTTGCCTTACCGTGTCA
GTTCTCCCTTAGCGTTCCATCCAGATTCCCCCCGAGCCACCGCTCCATACGAATAACGAAAACAG
AGCCGTGGATCTTCTCGTGTTCGGCGCGTACGTAAATACATACCCGAGATAGAGATGGAAGGACC
CCATACCCCAGAAAGGTACCTTGTGCAACGAATGAGAGCGGTTGGTTTCTTTATTTTCAAAGTGA
CATTGACTTTCAGAATAATTGCGTTTTGCTTGGAACCTATGCCCTACCTATGACCGAACACCTTC
CTTAATACCCCCTTGCCTGCCTACCCTCTCCATCCGAACGAAGTC
Found at i:276650 original size:105 final size:105
Alignment explanation
Indices: 276468--276676 Score: 400
Period size: 105 Copynumber: 2.0 Consensus size: 105
276458 TATGGTGAGG
*
276468 GATTTCTTGCTCACCTTCCCTCAAAAGGTGAGGCCCGGTAGGCCCGGTAGGGGCTCACTATTCAT
1 GATTTCTCGCTCACCTTCCCTCAAAAGGTGAGGCCCGGTAGGCCCGGTAGGGGCTCACTATTCAT
*
276533 ATGGTGAGGGTGAGCTTGCCGAACTCTCGACTAAAGGCCC
66 ATGGTGAGGGTGAGCCTGCCGAACTCTCGACTAAAGGCCC
276573 GATTTCTCGCTCACCTTCCCTCAAAAGGTGAGGCCCGGTAGGCCCGGTAGGGGCTCACTATTCAT
1 GATTTCTCGCTCACCTTCCCTCAAAAGGTGAGGCCCGGTAGGCCCGGTAGGGGCTCACTATTCAT
276638 ATGGTGAGGGTGAGCCTGCCGAACTCTCGACTAAAGGCC
66 ATGGTGAGGGTGAGCCTGCCGAACTCTCGACTAAAGGCC
276677 GCCATCGAAA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 102 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (105 bp):
GATTTCTCGCTCACCTTCCCTCAAAAGGTGAGGCCCGGTAGGCCCGGTAGGGGCTCACTATTCAT
ATGGTGAGGGTGAGCCTGCCGAACTCTCGACTAAAGGCCC
Left flanking sequence: Indices 275968 -- 276467
GAGGGGCAAGGACCCGGAGGGGCTTGCGCTTCCTAGTGCAAGGAATTAATTAGAAGTGTGAAACC
TGTTTCCATCCCCCCCATGCCCAGGAGGTCGCGGTTCTCCTTGTGCATTACCCGTTCTAGAGACA
CCGTGAAAAGTTCGACGTGCACAGGAATGAGGCGGTTATATATTTGTTACCTTTTATTGATAACA
CGTGCCCAGTCAGTGAGTGAGTGTCAGGTTAGTCAGTTAGGTTAGCCGGAAGAGATGGACCTGCC
CCTGAAGAAGCGAGACACGCCCCGTAAAGAGGAGCTTTAAGGCATGTAAGGTTGTATTCGTCTGG
ATCTGCTGTTGGCTCTACCCATGCCACCTTTGGTTCCTGAATTTACCCACACTCTCTATCATCTT
TAGACGCCCACTTTTGTTAGTCAATTTACCACCTTCTAAGGGCCGGGTTAATAGAGAGGTCCGGA
GGGCCCTATATTCTTTAGGGGTCACTCACTATTCATATGGTGAGG
Right flanking sequence: Indices 276677 -- 277176
GCCATCGAAATATGTGAAAACCTCCGCCTCCTCTCCTTATCAGTCGAGTCACTAACGTACCTCTC
CCGCTGGTCGAGCGTGCTCCGCATCCTCTCCTTAGATTGAGAGCAATTAAAGGCATCCTCTCCTT
AACAGTCGAGCCCCTCCGGTCCTCAAATGGCAAGAATAGGCCCGGTAGGGACTCACTATTCATAT
GGTGAGGAGAGAAAGATGTGAAAACCTCCGCCAAGGATGCGTAAGCAGGCTCGACTGATAAGGAG
AGGTACGTTAGTGACTTTTTAGTTACTTATTTGAGAGGGGCCACCCAATAAGTCAAATTGAAACG
ACCAACGGTAACAGATTAGCACCGGTCACTTAGACAGAGGAGCGAGTTACGAAATAAGGTACGAA
ATATCGACCATCCATCCAACCATACCAGCAAGCCATACCAGCCGTACCACGCTTTCAATGGGGAA
ATTCATGAAAGATCCATCCAACTCGAGGCCAGCGTTACCTATTGT
Found at i:277952 original size:22 final size:22
Alignment explanation
Indices: 277902--277954 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
277892 CTCCGGACTA
277902 TTTGTGGGGATGGATACGGACG
1 TTTGTGGGGATGGATACGGACG
* *
277924 GTAGTGGGGATTGG-TA-GGACG
1 TTTGTGGGGA-TGGATACGGACG
277945 TTTTGTGGGG
1 -TTTGTGGGG
277955 CTGGCCTAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 5 0.20
22 17 0.68
23 3 0.12
ACGTcount: A:0.15, C:0.06, G:0.49, T:0.30
Consensus pattern (22 bp):
TTTGTGGGGATGGATACGGACG
Left flanking sequence: Indices 277402 -- 277901
GCCTACTTGCCTAAACTTAGGGTGACCTATAGAAGTTCCCCTTTCAAAGAGATCGTGTAACTGGC
AGATGGACTGGGTATTCTGGACCATCATAAGCGGACAGGCTTCATACTGCTGGGAGAACCTTTGT
GTGACACTTGGCATGAATCTTAGGCCCTACTTGGACTCATGAAGCGCTTAGTAGGTATCACTAAT
TCACCTCTTATCAGCATCAGTAGGCCGGGCTCACCCTCCGTAATACTTGAGCTTAGCTTGAGACC
TTGCTTCACCCTGGTACCAATCATTTATAATCACAAGCTCCTAGTCTTTCCCACCTGCAAGAACT
ATAACTGTAGCCCTATACCATGGATGCACTTAGCCAGTCGGGAATGCTATGATCCACCTTAGAAG
CACCGGATGGGATGGATGGCTTTATCCCTTACCTTAGAGTGGGATGGACAAGATCTCTTCGATAT
TCGCTATTGATGGATTCCCCCAAAGCCTGACCCACCTCCGGACTA
Right flanking sequence: Indices 277955 -- 278454
CTGGCCTAGCTCCTGAGCCTGCCCAATTGACTTCTCTTATATAGAAAGGGGAATCTCTCGATTTA
CTTATAGGAAGGGGTGGATGGGAAAGGAAAGAACGGCCAAGGAAAGAAAAGAATGGTTGGCAATT
GACTTAGATAGAAAGGCTATCTATATTGACTTACTTATAGGGATGGATAGGGGAATCTCTTTATT
GCACTCATCTTTTCGCAATGTGTCTGGAATTCCCCGCATGGAAGTAGAAGAATTGGAAGATTACT
GCTTCTTTAGCAGTTCGAAACCAAGTCAAAACGATGGAATTGGAGAACAACTACACTTCCTATCC
TCGGGCGCAGATCTCGTGGTAGGATCTAGATATGGATATGGAAATTCCTCGCAATTATTAGATAG
AATGGGCTCACGAACAACGAGGGCGAAACGGGTAACTAGATTCCCTTAAATAATGGTTTTCCGGT
TCAGAGATAGAGGGATCACGGGCGGTATTTATCCAGTTCCTCGAG
Found at i:279107 original size:6 final size:6
Alignment explanation
Indices: 279096--279122 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
279086 GATGGTGGTG
279096 CTATAT CTATAT CTATAT CTATAT CTA
1 CTATAT CTATAT CTATAT CTATAT CTA
279123 GACATCGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (6 bp):
CTATAT
Left flanking sequence: Indices 278596 -- 279095
ATATAGGGAGAAAGGCAACTGAACTTGCTTGCGTGCGGGGTGGCGGGATCTATCATCGGTAAACT
AACGTGTGACAAGCGTTTCTCTCTTCCGGCAAAGGTATATCTCTGCTGCAAAGGAAGACATTGAT
CCTGCGCCCGCAAACGCACTTTTGATTTCGCATGCAAAGGAGGCATTTTCTATGCCTGCAAAGGC
ACTGTTCCTTCCCGGCCTACAGCGATTCCTCCTGAGTAGACTGTTCTTGATTCTATTTATATCAT
GATGATCCGTGTCGGGGCTAAGCGTTTTATCATTCATTATGGGCATTAAGTAAGTCAAATTGAGG
CGAAGTGGGTATGCCGTGTTGACTGTGGATGCGCTTTGTTCGGACGGGCTGCTATGTAGGTATAG
ATTTTATGGCGCTTGATTCTTTCATTCATGATCGATACGGAGTAGGTTGTTCCACTATATATTAT
CTGCATTGGGCGGGCGACTTGGTAGGCATAGACTTGATGGTGGTG
Right flanking sequence: Indices 279123 -- 279622
GACATCGATGATTTATTGGGGCCTTGGAGGAAACGTAATGGTTGACCAAGCCAACCACCAATGAT
GCTTAGCGAATATTTATTGTAGGATGCGCTTTGTACGGGCTCTGACCGACTCTTTCTGGCTGGGA
TGGCTAGCTGGGGTGGATAATTTAAGTAACAAAGGGTGGGGTTGCGAGAATGATTAATTGACCAT
ATACAGCTTATTATCTGGCAGATGCAGTTATCTACGTAATAAGATGGATGGATAGGATGGATGAT
AAGGTAGCCTGCCCTATCAATATGGGAAATTCTGTAATCAAGGGTGCGTAAGCATGCTCGACTAA
CAGGAGAGGGTGCCCCCGGCAGGGTGAGGTACGTTAAGTGACTCGACTTATGCTAGTTACTTATT
TGAGAGGGGCACCCAATAAGTAAATTGAAACTTTAGAGAAATCCCTTGCCTTAGGAAGAATTATT
GCTACCACGTATTACCTTCTGGTCCGGCCGAGCCTTATCGATACG
Found at i:281357 original size:36 final size:36
Alignment explanation
Indices: 281317--281405 Score: 178
Period size: 36 Copynumber: 2.5 Consensus size: 36
281307 CGTTAGGAAA
281317 GCAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAAGG
1 GCAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAAGG
281353 GCAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAAGG
1 GCAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAAGG
281389 GCAAGGTGCGAAGCCGC
1 GCAAGGTGCGAAGCCGC
281406 TTGTCCCTCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.36, C:0.19, G:0.39, T:0.06
Consensus pattern (36 bp):
GCAAGGTGCGAAGCCGCCAGAGAAGAAATAGGAAGG
Left flanking sequence: Indices 280817 -- 281316
GCCTGACAGAAAGCCTGTTCAGTGAGCGGGCAAATCTTTTCAGTGAGTGCTTGAGTGATCAGACC
TTCTATGAGACATGTCAGAAATGACATATATAATAGATCTTTTCTGAAACCACTACGTAATTGAT
CTTATATATGTTAACATCTATTTTCATTGATGTTATGGGAAGGTGAAGAAAGGCTTCTGGCGGCG
AGAGGCTAAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGACCGGTAGGGGCTTGCTTGACGC
TAGGAAAGCAAGGACCCGTTAGGGGGCTCACTATTCATATGGTGAGGGTGAGCCTGCCGAACTCT
CGACCAACGCTAGTTACTTATTTGAGAGGGGCACCAAATAAGTCAATTTCAATTTCTTGCTTGCT
TGACGTTAGGAAAGCAAGGTGCGAAGCCGCTTGTCCCTCCGGGGGCAAGGTAATTTATTGCTTGT
CCGCACCGGGCAAGGACCGGTAGGGGCTTGCTTGACGTTAGGAAA
Right flanking sequence: Indices 281406 -- 281905
TTGTCCCTCCGGGGGGCAAGGTAATTTATTGCTTGTCCGCACCGGGCAAGGACCGGCAGGGGCTT
GCTTGACATTAGGAAAGCAAGGACCCGTTAGGGGGCTCACTATTCATATGGTGAGGGTGAGCCTG
CCGAACTCTCGACCACCGCTAGTTACTTATTTGAGAGGGGCACCCAATAAGTAAAATGAAACTTT
AGTTGCTCTTTGGTTACTTATTTGAGAGGGGGCACCCAATAAGCAAACCCAAACCGGCAGGGGCC
CTTTTTTTTACTTATTTGAGAGGGCCCACCCAATAAGTAAAATGAATTTATTGCTTGCTTGACGT
TAGGAAAGCAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGAACAACGTCGCTTGCTTGACGT
TAGGAAAGCAAGGACCCGAAGGGGCTTGCGCTTCCTAGTGCAAGGTGAGAGGCCCTTTGTGAAAG
GCTTCTGGTGAAAGGCAAAAGTTGAAGGCAGGTGCGGCTGGAATC
Found at i:282176 original size:22 final size:22
Alignment explanation
Indices: 282158--282200 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
282148 TATATAGGGA
*
282158 ATACAGCTAGGCGAGATAGGCG
1 ATACAGCTAGGCAAGATAGGCG
282180 ATACAGCTAGGCAAGATAGGC
1 ATACAGCTAGGCAAGATAGGC
282201 AAGCGCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.33, T:0.14
Consensus pattern (22 bp):
ATACAGCTAGGCAAGATAGGCG
Left flanking sequence: Indices 281658 -- 282157
CAGGGGCCCTTTTTTTTACTTATTTGAGAGGGCCCACCCAATAAGTAAAATGAATTTATTGCTTG
CTTGACGTTAGGAAAGCAAGGAACGTAGTCGCTTGTCCGCACCGGGCAAGGAACAACGTCGCTTG
CTTGACGTTAGGAAAGCAAGGACCCGAAGGGGCTTGCGCTTCCTAGTGCAAGGTGAGAGGCCCTT
TGTGAAAGGCTTCTGGTGAAAGGCAAAAGTTGAAGGCAGGTGCGGCTGGAATCCCGAGATGTATC
CATCCATGTATCCATATTTCTCAATTAAGGCGGACGAGCAATAAATCCCTCGACCCTCCTCCTTC
CAACCGTTTAGGGTTGGCCCTTTTCGTCTCTTTTCCTTGGTCTTGCCACTCTCGATTCTTTCCTC
TATTCCAGCCCAGAGAATCAATCTATCCTTCTTGCTGCTGCCCCGTAGAGCTGGTGTGGGGCTTT
GCATGCTGTACCAAGACCTCTGGAAGCTTTCTTTATATATAGGGA
Right flanking sequence: Indices 282201 -- 282700
AAGCGCTATTCATTTACTGACTTGGAAGGGAGGGTAATATCTATTCTTTTCTTACTGACTTGGCT
ATGCGAACACAAGGAGAAGGCATGTAACGTATTAATATATAAGGGAGCCTGCCCTCCTAATAAGA
TATCTGCCTGCCTAATAAGATATAAGGACCCCTAGCCTAAGACCCCCAAGACCCCTATTGAACTA
GAAAACTATAATAAGGAGGGGGATTGTTCAGTTAAGCACCCCGGTAGGAGGAACTGTCCGGGCTG
GTTGAACAATACAAATCTTTTCTGTCCGGTGAGAGGGTAGAAGCCGTAGCTCCGGGGTGAAGGCT
ATTAGTTCTCCCTGGGGGTGTGGGATGGAGAGTAGAGAATCTGGCCCCTACTATTGGTTAGGGCG
ACGAGCTGAGCTTCCATCCTTGTTATCGCGTAAGTGCGACGAGCTTCAATGTTGGGAGGCAGGGA
CCATAGTAGCTAGAGAAGCAGGAAGGTCAAGGTGCCCGGAGAGAC
Found at i:282713 original size:20 final size:20
Alignment explanation
Indices: 282688--282726 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
282678 AAGGTCAAGG
282688 TGCCCGGAGAGACAGAAGTT
1 TGCCCGGAGAGACAGAAGTT
282708 TGCCCGGAGAGACAGAAGT
1 TGCCCGGAGAGACAGAAGT
282727 GAACAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.36, T:0.13
Consensus pattern (20 bp):
TGCCCGGAGAGACAGAAGTT
Left flanking sequence: Indices 282188 -- 282687
AGGCAAGATAGGCAAGCGCTATTCATTTACTGACTTGGAAGGGAGGGTAATATCTATTCTTTTCT
TACTGACTTGGCTATGCGAACACAAGGAGAAGGCATGTAACGTATTAATATATAAGGGAGCCTGC
CCTCCTAATAAGATATCTGCCTGCCTAATAAGATATAAGGACCCCTAGCCTAAGACCCCCAAGAC
CCCTATTGAACTAGAAAACTATAATAAGGAGGGGGATTGTTCAGTTAAGCACCCCGGTAGGAGGA
ACTGTCCGGGCTGGTTGAACAATACAAATCTTTTCTGTCCGGTGAGAGGGTAGAAGCCGTAGCTC
CGGGGTGAAGGCTATTAGTTCTCCCTGGGGGTGTGGGATGGAGAGTAGAGAATCTGGCCCCTACT
ATTGGTTAGGGCGACGAGCTGAGCTTCCATCCTTGTTATCGCGTAAGTGCGACGAGCTTCAATGT
TGGGAGGCAGGGACCATAGTAGCTAGAGAAGCAGGAAGGTCAAGG
Right flanking sequence: Indices 282727 -- 283226
GAACAAATTGATTTCCGCCCCCGGAAGGTAATAGAATTTCTAATCGCCTTAGCTTTCATGGACCA
AACGAAATAGTTTTTGAGAAATCAAAGTTGGGTTGGAGTCTCTCTCTGCTGGAGTCTCTGCGTCT
GTCCCAGCAGCTGGACCATAAAAAGTTTTGATTGGCCGGAAGGAACTAGCCGGTTGACTCAACGA
TTGTTCTTTCTTTCCTGTCCCGGGAGGCCGGGAAGTATATTAGTTGTTAAGGACCCCCGGTTGGA
TAGTATAGAATCTGTGAAGGCCATCCGAGGATAGCTCATCCAGCCGTCCAGAAGTAGGCCTGAAC
TGAACACCTTCGGTTAACCCCACTACCTAACTTTCAATTGATGTTCATTACCTTGGCCTATTCAA
TACCGGATAACGCTAACACCGGAAGGCCAGACGAGTTGCTAGTCGATGCCGGAAGGTGTTAACTC
AACCGGAAGGAAGAGGCTTGGGCTCCAACTGGTGCTATTGATGCA
Found at i:284161 original size:13 final size:14
Alignment explanation
Indices: 284138--284166 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
284128 TTTGGTAGCT
284138 GACATCGATTCGCC
1 GACATCGATTCGCC
284152 GACA-CGATTCGCC
1 GACATCGATTCGCC
284165 GA
1 GA
284167 TCGCCGATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.17
Consensus pattern (14 bp):
GACATCGATTCGCC
Left flanking sequence: Indices 283638 -- 284137
GGAATGAAGGCTGCTATGTTGCCTACCCTACACCCCCGGTGTTCAGTTCAGGTAAGCTATAACTA
GCTGGGTTCAGACTCGATGGGAGCATCCAAATAAGGTAGCTCGAGCTATCCATCCAAATTAGTTT
GGCGGGGGTGAAGACAAGCCGGTTGGATTGTTCGGAAGAGGCGCTCCTACTAATAGTTCTATTGC
AATGTAACTCCCATCCAAAAGCTGGTCGGATCGATGGAAAAAAACCAACTGTGGGTGGGGGAGGG
TAGTTGAGGCATCCCAGCAGTTCAAGATGGAACTCAGTATCAATTTGTGAAACTGAATCAACGGC
TTGGGTGATTTCCCCTTAGCTTGTTTGGCGCCTTGCTTGGGTGAGTCGCGTAGCCTATGATTTGT
TTGGCGCTGAGCTTCTATTGGGGTGGGAAATTCCCTAATGAAAGGTGGCGTTGCCCCAAGGAAAG
TGCCTGACCTTCCCGATCGATAAGCCAACATTCACTTTGGTAGCT
Right flanking sequence: Indices 284167 -- 284666
TCGCCGATCTCTGCCCCTTAAGAAAATAGGCCTTATCGCCGAAGGTGCCGTAAGGCCGCTTGACC
GTAAGGATGCGTAAGCATGCTCGACTGTTAAGGAGAGGATGCGAAGCATGGCTCGACCAACCTTT
AGTTACTTATTTGAGAGGGGCCACCCAATAAGCATCAAGGGCCCTCTCCTTGACAGTCGAGTGTA
CTAACGCACCCTCACCATCGGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCGC
CCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGT
CCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCT
CACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGG
TCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTG
Found at i:284404 original size:26 final size:26
Alignment explanation
Indices: 284370--284419 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
284360 TACTAACGCA
*
284370 CCCTCACCATCGGAATAGTGAGTGAC
1 CCCTCACCATAGGAATAGTGAGTGAC
*
284396 CCCTCACCATATGAATAGTGAGTG
1 CCCTCACCATAGGAATAGTGAGTG
284420 GCTCCGCCCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (26 bp):
CCCTCACCATAGGAATAGTGAGTGAC
Left flanking sequence: Indices 283870 -- 284369
AAAAAAACCAACTGTGGGTGGGGGAGGGTAGTTGAGGCATCCCAGCAGTTCAAGATGGAACTCAG
TATCAATTTGTGAAACTGAATCAACGGCTTGGGTGATTTCCCCTTAGCTTGTTTGGCGCCTTGCT
TGGGTGAGTCGCGTAGCCTATGATTTGTTTGGCGCTGAGCTTCTATTGGGGTGGGAAATTCCCTA
ATGAAAGGTGGCGTTGCCCCAAGGAAAGTGCCTGACCTTCCCGATCGATAAGCCAACATTCACTT
TGGTAGCTGACATCGATTCGCCGACACGATTCGCCGATCGCCGATCTCTGCCCCTTAAGAAAATA
GGCCTTATCGCCGAAGGTGCCGTAAGGCCGCTTGACCGTAAGGATGCGTAAGCATGCTCGACTGT
TAAGGAGAGGATGCGAAGCATGGCTCGACCAACCTTTAGTTACTTATTTGAGAGGGGCCACCCAA
TAAGCATCAAGGGCCCTCTCCTTGACAGTCGAGTGTACTAACGCA
Right flanking sequence: Indices 284420 -- 284919
GCTCCGCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCTCTCCTCTCCTTATCAGTCGAGCCCCCT
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCC
CTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATCGG
AATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTTGCCCCTCCTATTTCTTCTCTGGCGGC
TTCGCACCTTGCTCAGGCCTTGCCTTGTAGGGTGGCCTCACTTTGAAGGGGGCGAAGGCCGACCA
AATGATAGACCAAATGAGAAGGGGAGAAAGCTCAGGCCCCCTGAT
Found at i:284462 original size:27 final size:27
Alignment explanation
Indices: 284426--284484 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
284416 AGTGGCTCCG
284426 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
284453 CCCCTCTCCTCTCCTTATCAGTCGAGC
1 CCCCTCTCCTCTCCTTATCAGTCGAGC
284480 CCCCT
1 CCCCT
284485 AAAGGGTCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.10, C:0.51, G:0.10, T:0.29
Consensus pattern (27 bp):
CCCCTCTCCTCTCCTTATCAGTCGAGC
Left flanking sequence: Indices 283926 -- 284425
GGAACTCAGTATCAATTTGTGAAACTGAATCAACGGCTTGGGTGATTTCCCCTTAGCTTGTTTGG
CGCCTTGCTTGGGTGAGTCGCGTAGCCTATGATTTGTTTGGCGCTGAGCTTCTATTGGGGTGGGA
AATTCCCTAATGAAAGGTGGCGTTGCCCCAAGGAAAGTGCCTGACCTTCCCGATCGATAAGCCAA
CATTCACTTTGGTAGCTGACATCGATTCGCCGACACGATTCGCCGATCGCCGATCTCTGCCCCTT
AAGAAAATAGGCCTTATCGCCGAAGGTGCCGTAAGGCCGCTTGACCGTAAGGATGCGTAAGCATG
CTCGACTGTTAAGGAGAGGATGCGAAGCATGGCTCGACCAACCTTTAGTTACTTATTTGAGAGGG
GCCACCCAATAAGCATCAAGGGCCCTCTCCTTGACAGTCGAGTGTACTAACGCACCCTCACCATC
GGAATAGTGAGTGACCCCTCACCATATGAATAGTGAGTGGCTCCG
Right flanking sequence: Indices 284485 -- 284984
AAAGGGTCCTTATTAGTCGAGCGTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTAC
CGGTCCTCACCATCGGAATGGTGAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCC
TAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCC
CTCTCCCCTCCTCTCAAATAAGTAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATCGG
AATAGTGAGTGGCTCCGCCCCTAAGAAGTAAGGGCCCTTGCCCCTCCTATTTCTTCTCTGGCGGC
TTCGCACCTTGCTCAGGCCTTGCCTTGTAGGGTGGCCTCACTTTGAAGGGGGCGAAGGCCGACCA
AATGATAGACCAAATGAGAAGGGGAGAAAGCTCAGGCCCCCTGATATATTGAAAAGGGAGCAATA
GATGCCAGGCCTGAGATATCGACCGACTTGAACCTTGATATACTC
Found at i:284494 original size:27 final size:27
Alignment explanation
Indices: 284436--284506 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
284426 CCCCTCTCCT
*** *
284436 CTCCTTATCAGTCGAGCCCCCTCTCCT
1 CTCCTTATCAGTCGAGCCCCCTAAACG
*
284463 CTCCTTATCAGTCGAGCCCCCTAAAGG
1 CTCCTTATCAGTCGAGCCCCCTAAACG
* *
284490 GTCCTTATTAGTCGAGC
1 CTCCTTATCAGTCGAGC
284507 GTGCTTACGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (27 bp):
CTCCTTATCAGTCGAGCCCCCTAAACG
Left flanking sequence: Indices 283936 -- 284435
ATCAATTTGTGAAACTGAATCAACGGCTTGGGTGATTTCCCCTTAGCTTGTTTGGCGCCTTGCTT
GGGTGAGTCGCGTAGCCTATGATTTGTTTGGCGCTGAGCTTCTATTGGGGTGGGAAATTCCCTAA
TGAAAGGTGGCGTTGCCCCAAGGAAAGTGCCTGACCTTCCCGATCGATAAGCCAACATTCACTTT
GGTAGCTGACATCGATTCGCCGACACGATTCGCCGATCGCCGATCTCTGCCCCTTAAGAAAATAG
GCCTTATCGCCGAAGGTGCCGTAAGGCCGCTTGACCGTAAGGATGCGTAAGCATGCTCGACTGTT
AAGGAGAGGATGCGAAGCATGGCTCGACCAACCTTTAGTTACTTATTTGAGAGGGGCCACCCAAT
AAGCATCAAGGGCCCTCTCCTTGACAGTCGAGTGTACTAACGCACCCTCACCATCGGAATAGTGA
GTGACCCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCT
Right flanking sequence: Indices 284507 -- 285006
GTGCTTACGCACCCTAAAGGGTCCTTGACAGTCGAGCCCCTACCGGTCCTCACCATCGGAATGGT
GAGCCCCTACCGGTCCTCTCCTCTCCTTATCAGTCGAGCCCCCTAAAGGGTCCTTGACAGTCGAG
CCCCTACCGGTCCTCACCATATGAATAGTGAGTGGCTCCGCCCCTCTCCCCTCCTCTCAAATAAG
TAACCAAAGGCAGTCGAGTGTGCTTACGCACCCTCACCATCGGAATAGTGAGTGGCTCCGCCCCT
AAGAAGTAAGGGCCCTTGCCCCTCCTATTTCTTCTCTGGCGGCTTCGCACCTTGCTCAGGCCTTG
CCTTGTAGGGTGGCCTCACTTTGAAGGGGGCGAAGGCCGACCAAATGATAGACCAAATGAGAAGG
GGAGAAAGCTCAGGCCCCCTGATATATTGAAAAGGGAGCAATAGATGCCAGGCCTGAGATATCGA
CCGACTTGAACCTTGATATACTCTTGGGACTTCCAGCCTGGTATG
Found at i:286944 original size:120 final size:120
Alignment explanation
Indices: 286731--286969 Score: 478
Period size: 120 Copynumber: 2.0 Consensus size: 120
286721 CGAAGCTAGA
286731 GAGGTTGCATATCCAGTTTACCGAGTGAAGGCATAAGGAGGGGCGGGGCGGTTAACCCACCACCG
1 GAGGTTGCATATCCAGTTTACCGAGTGAAGGCATAAGGAGGGGCGGGGCGGTTAACCCACCACCG
286796 CAGAGACAGGGACAGATACAGAGGTAGGAGCGGATTCACCTAAAATTGCTTAAAG
66 CAGAGACAGGGACAGATACAGAGGTAGGAGCGGATTCACCTAAAATTGCTTAAAG
286851 GAGGTTGCATATCCAGTTTACCGAGTGAAGGCATAAGGAGGGGCGGGGCGGTTAACCCACCACCG
1 GAGGTTGCATATCCAGTTTACCGAGTGAAGGCATAAGGAGGGGCGGGGCGGTTAACCCACCACCG
286916 CAGAGACAGGGACAGATACAGAGGTAGGAGCGGATTCACCTAAAATTGCTTAAA
66 CAGAGACAGGGACAGATACAGAGGTAGGAGCGGATTCACCTAAAATTGCTTAAA
286970 CCTGGTAAAC
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.31, C:0.20, G:0.32, T:0.17
Consensus pattern (120 bp):
GAGGTTGCATATCCAGTTTACCGAGTGAAGGCATAAGGAGGGGCGGGGCGGTTAACCCACCACCG
CAGAGACAGGGACAGATACAGAGGTAGGAGCGGATTCACCTAAAATTGCTTAAAG
Left flanking sequence: Indices 286231 -- 286730
CCTACGGGGGAACCCCTTGCTTTCCTAACGTCAAGCAAGCCCCTGCCGGTCCTTGCCCCGTAGAC
CTTTGCCTTTGGTACCGAAGGCAGCAGCAAGAACAGAGGTCAAGAAAGCATAAACAGAGGCGGTT
GCGAAAGCAGATCCAAATATTGTTCGAACGGATCCATTTGCAGTTCCAGCTCCTTGGCCAGTGAG
AACCCTTTTTCCAGCATAAGCTAGAGCTCCTCCTAGAAGTGGTGGTGTTCTGCCATTGCCTGTAC
TTTATAGGAGCTATCTTTAACAACTCCCCAAACGTATCCATCAGCGTATACCAAACATACGTCAG
TCAGTCTCATCTTGCCATCCATCACCACCTGCCATTCTGCCCCGATCAAACCCAGGGCCCACCCG
TACAAATAACACACGTCCATGGTAAGTCAAAGGCCCAGTTCCTATCTATCGGGAAGTAAAAACCA
CCCGCCTAATAACCATAAGAGGTGGCTACAGAGGCCGAAGCTAGA
Right flanking sequence: Indices 286970 -- 287469
CCTGGTAAACGACGAATTCTCGGTCTATCCTATACCTGTAGTGTGCGTGCTCATGATCACGCCTG
CAGCTTCTGCCTCTCCATATGCTTCAATTGATGTTTGGGCTGGGCCAACTACTGAGTAAACCGGT
TATGAAACTGGATCATCCGTAGAGGGATCTGGATCTTTACGAGGTGGTGGCCTTAGAACTGAACC
TTAAGTAGGTAGGTCCATCCGTATATGCATATGGCCTTGGAATGGGATAAACTCCAATTGGTTAT
TCGACTGGAAATGGAACCTCCAACTCCGCCTTTGCTCCCTTTACGAGATCCACTGATTCTAGTTC
AATGGATTATTAGTAAACCGCAGCTTCAACGAGTTGAAAAAGATCAATCGCTTCCGAGTAAACTA
AGTCCATGGGCTCTCCAACAGGTTATGCATCTTGATATCTAACAGGGGAACGAATTGCCTATGCC
TATTCTGCCTTTGCCCCCGCTACTGGGTCTTCAATTGATGGATCA
Found at i:290797 original size:32 final size:32
Alignment explanation
Indices: 290753--290825 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
290743 GTCCAACACT
290753 CACTAT-C-TAAGGGTCTGGTCCTCAATCAAA
1 CACTATGCGTAAGGGTCTGGTCCTCAATCAAA
* **
290783 CACTATGCGTAAGGGTCTGGTCCTCCATCCTA
1 CACTATGCGTAAGGGTCTGGTCCTCAATCAAA
290815 CACTA-GCGTAA
1 CACTATGCGTAA
290826 CGTAAGGGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.16
31 7 0.18
32 25 0.66
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (32 bp):
CACTATGCGTAAGGGTCTGGTCCTCAATCAAA
Left flanking sequence: Indices 290253 -- 290752
CGACTCGTATATAACCAAGCTGTTGTAAACCTAGCTCTATTGCTCTACCTTTCTTTGCTGACACC
ACCTCGTCTGTTGAGAACATGTTTCACTTCTCTGCGATAAGGCCTTCCTTCTCTCATCTGGTGGG
AACTTGGAATGGGTGGTGTAGTTTGGGAAATGGGTGCACCTTACACCGGTAGATAATCCGTCCCC
CCTGTCCGCATCTTTAGGTCAGCATCATAATATTCAGTTCCCTCTGGCCATGGAACTCAATCAAT
CATTTCGTCTTTCTCCTTTCTCACTGTAACAAACAACCTTTACCTGTTCTCGAGGAATATGGGAA
GAACTATAACCCAATAAGTAAGGGTCAACAGGTAATACCTTGCTTCCTTCTGGGATGAGTATTCG
TGTAAAGATAGGGTATGGGCTTGGTGAAATTGAATGGAATAAGTAATGGAGGGAAAGCAGGTCCG
AGGGTGAAAGGTAAAAGTAAGCAATACAGTGGCTGGTCCAACACT
Right flanking sequence: Indices 290826 -- 291325
CGTAAGGGGGTTTTCACCTGAGGTCTGGGGCTTTCTTGGTCCTATGCTCGGGTTTAAGGTAAAAG
CGGTAAAAGTGAAAAGGTAAGGGTAGGTGGTTGCTGGTCCTACAATGTCCTAGGGTATTAACGTA
TATAGAGTACAATAAGTAGCTGCCCCTAAGGAACCGTAATTCAGGCAGTGGGTGACGGAGATTGT
GTGAAGGTGTTGTAGCTGGTCCTAAATGTCCTTTCGTATTCACGTATACAAGAAGGTATATGCCC
CAAAGTCGTATTCACGTATACAAGAAGTCTATGCCCCATATGCCCCTAAGTAACGTAGGTAATTC
AGGCATTGGGTGACGGATAACATAGGAGTGTATCTCCCTCCCCTCCTCTGGCCCTGTAACGAGGT
GTTGCTAGCTAACCTAACCTCACCTCACCTAACTAAACAGATTGGGGGAATGCCTTTCTCGTCCC
GGTTAAATAACCAAGGGTAAGGTAAACAATAATTGGACGCATGTG
Found at i:291104 original size:37 final size:36
Alignment explanation
Indices: 291054--291123 Score: 122
Period size: 37 Copynumber: 1.9 Consensus size: 36
291044 AAATGTCCTT
291054 TCGTATTCACGTATACAAGAAGGTATATGCCCCAAAG
1 TCGTATTCACGTATACAAGAA-GTATATGCCCCAAAG
*
291091 TCGTATTCACGTATACAAGAAGTCTATGCCCCA
1 TCGTATTCACGTATACAAGAAGTATATGCCCCA
291124 TATGCCCCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 11 0.34
37 21 0.66
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (36 bp):
TCGTATTCACGTATACAAGAAGTATATGCCCCAAAG
Left flanking sequence: Indices 290554 -- 291053
ACCTGTTCTCGAGGAATATGGGAAGAACTATAACCCAATAAGTAAGGGTCAACAGGTAATACCTT
GCTTCCTTCTGGGATGAGTATTCGTGTAAAGATAGGGTATGGGCTTGGTGAAATTGAATGGAATA
AGTAATGGAGGGAAAGCAGGTCCGAGGGTGAAAGGTAAAAGTAAGCAATACAGTGGCTGGTCCAA
CACTCACTATCTAAGGGTCTGGTCCTCAATCAAACACTATGCGTAAGGGTCTGGTCCTCCATCCT
ACACTAGCGTAACGTAAGGGGGTTTTCACCTGAGGTCTGGGGCTTTCTTGGTCCTATGCTCGGGT
TTAAGGTAAAAGCGGTAAAAGTGAAAAGGTAAGGGTAGGTGGTTGCTGGTCCTACAATGTCCTAG
GGTATTAACGTATATAGAGTACAATAAGTAGCTGCCCCTAAGGAACCGTAATTCAGGCAGTGGGT
GACGGAGATTGTGTGAAGGTGTTGTAGCTGGTCCTAAATGTCCTT
Right flanking sequence: Indices 291124 -- 291623
TATGCCCCTAAGTAACGTAGGTAATTCAGGCATTGGGTGACGGATAACATAGGAGTGTATCTCCC
TCCCCTCCTCTGGCCCTGTAACGAGGTGTTGCTAGCTAACCTAACCTCACCTCACCTAACTAAAC
AGATTGGGGGAATGCCTTTCTCGTCCCGGTTAAATAACCAAGGGTAAGGTAAACAATAATTGGAC
GCATGTGGTATGTGACCAACCCCCAAATAAGTAACTAAGGGTAAAAAGAAAGGTTCTACGTGTCC
TTCCCTTCTGGGATGAGGATTCGCAGGATAGGTAGGGTAGCTTGGTGAAAGGTGAATTCCATCAT
TAATGGAGGGACAGCAGTTACGACGGTTCAAATAAAAGGTAAGCAATAAAGTAGGTGTCTGGTCC
AACAATAGCTCCAGGGTCTGGTCCTCCATCCAACACCATCAACCAATAGCGTAAGTATAGGTCCA
ACGGTTGAAAGCAAAAGTAAGCAATACAGTGGCTTACTGACTGAT
Found at i:292783 original size:18 final size:18
Alignment explanation
Indices: 292760--292796 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
292750 TTAGAAAAGG
292760 ATATAAGAAGTAAGTTTT
1 ATATAAGAAGTAAGTTTT
292778 ATATAAGAAGTAAGTTTT
1 ATATAAGAAGTAAGTTTT
292796 A
1 A
292797 GGCTTTTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (18 bp):
ATATAAGAAGTAAGTTTT
Left flanking sequence: Indices 292260 -- 292759
GCACTTAACTGATGGATGGCTCCTTCTTTCAGTCTGTACGTCACAGATAGATTCCAAATCCGTAA
ATGGGCTCAATTAGCTCAGCTCCTTCGTTCCTTTCCTTTCGGTCAGTTCGCTTGCTTCCTTTCTT
TTGGTCAAAGCAACTACTCGACAGCAGGAAGTAGTTCTCGCTGAATCCGTTTCTATTCCCTCGAG
TTCCTACTTCCGGGTATCGAGATCAGAGGCAGTCGATGGAGCAGGCACTCGAGAGCAGGCAATCG
AAGAGTCCGTCCGTAGAAAGAAAGACGCTCTTCGTTCTCCCTTTGAGGGGTTGGGGGTGGGAGCC
GAAGGAATAGGAAGTGCGTAGAGAGAAAGAATTAGTCGTTCCGTTTTTGGAAGGCAAGGTTAGTA
AGGCTGCTCTATTGTTAACTATTTACCCACCCACCCCAATCCCCGAAGGATGGCTCACCTGAGGT
AGGAGGGTGAGGAAGGAATTGGGAATAAGGCTTATTTAGAAAAGG
Right flanking sequence: Indices 292797 -- 293296
GGCTTTTCCTTCTTGAGTCTTTATTTCCCCGGTTCATTCAATTATTCATTCCCACCCTTTGACTT
ACCGGATGATAAGCGAAAAAGCAGAAGTGAAAGGCAGTCATTGACTCTATACAGTGAGGTATCTC
CTTACCATTTCTTTCCTAACTGAATGGGCTATCTTGACCATATCTGTCCTTCCCTCCACCTTGAG
TATCCTTCCCCCCTAATTCCCCACCTCTTATACTATGAAGAGTCTCCTTCCCCATATCTGATCTC
TCCTTCGCCTGCTTCCCTAGATAGTTGCTATAGAACTGTCCCACAGCAGTCATTAGGGTCTATTC
CCCGCTTATTTCCTCCATACAGATGCTTTATTTACAGTTGGGATATTGTTCTAAGTAACGAACCC
TATTATTTCTCTTAACGCTCTCCTCTATACAGTTAGAGATATCCTTACCATTTCTGTCCTTACTT
GTATGGGCTATCTTGACCATATCTGCCCTAACTATAAGGGCTTTA
Found at i:293850 original size:22 final size:22
Alignment explanation
Indices: 293814--293861 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
293804 TATCGAACTG
* *
293814 CCTATCCGTAGCGATCTGCCTA
1 CCTATCAGTAGCGATCCGCCTA
*
293836 CCTATCAGTATCGATCCGCCTA
1 CCTATCAGTAGCGATCCGCCTA
293858 CCTA
1 CCTA
293862 AGGAAGGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.27
Consensus pattern (22 bp):
CCTATCAGTAGCGATCCGCCTA
Left flanking sequence: Indices 293314 -- 293813
ACTATCTACTGGAGAGGATAGATTTCTTTATAAAGGCATCCATGTTCCTCGGTAGGTGCTGGGCT
CGGCTATTCCTGCTATGCCTCTTGGCTGGCCAGACCGGCCGGCTATTTATCGCAGCGGGGTTATT
GGCCCTACGGCCATTGCAAGCAAACTTAGCGAAGTATTACGGATCAAGCCTTAGCGTCTGCCCAA
CTGCACTAGTTACTATATCTGTCCAACTACACTAGCCCAACTGCACCGGTTACTCTATCTGCCCA
AAAGAGTCTGAATATAACTCTTACTTTGTACTTATCGAGGTTCTGCCCCCATATATAAGTAAGTA
AGGAAAGAGGTTCTCAATACTTTCTTACTTATGTATGTAATTACGCTCCGATCTTGAAAGAGATT
GATTCTGACCGGAGTACCCTCCCAAGGCCAAGGGGATAAGTAGATCAACCGCCCTGCCTACCCAC
CCACTAAGTCTCGTCCTGCCTACCTACCTATCCTATATCGAACTG
Right flanking sequence: Indices 293862 -- 294361
AGGAAGGAAGGGGATAGTAGCGACCTGCCTACCTATCAGTATCGATCTGCCTACCTGCCTGTCAG
ATTCGAGGACCCTAAAGCGGGTATTGACTATTCCATACAAATCCCAAAAGAAAAAGACACTCCAA
CAGCAACTCTCAGAAGAAAACGATTCAAATTAGTGAATGAATTCCGATTACCAAGGTATTGGGTC
GAGTCAATTCAGAAAATGGAATAGATAGGACATATGTAAATAGATAGATAGGAAATATGTAAATG
GAATAGATAGATAGGACATATGTAAATAGATAGATAGGAGATCTGTATCCCAATCAATTCTGACA
TCTGGATAACTCTATTTTCTTTTTATTCGTCTTTCCTTGACTGTTACCCTTCATTCCTTCGATCA
TACCCGATAAGGTTATAAGTGCCTAGCAACAAAGGGTAATGAAAGGCAAGTGTTATCGAGGTGAA
TGCTGTCTCTCTCGAACGCCCATACAAGATGCTCTATGTGAACTG
Found at i:294127 original size:28 final size:28
Alignment explanation
Indices: 294095--294158 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
294085 GACATATGTA
*
294095 AATAGATAGATAGGAAATATGTAAATGG
1 AATAGATAGATAGGAAATATGTAAATAG
*
294123 AATAGATAGATAGGACATATGTAAATAG
1 AATAGATAGATAGGAAATATGTAAATAG
294151 -ATAGATAG
1 AATAGATAG
294159 GAGATCTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 8 0.24
28 26 0.76
ACGTcount: A:0.50, C:0.02, G:0.23, T:0.25
Consensus pattern (28 bp):
AATAGATAGATAGGAAATATGTAAATAG
Left flanking sequence: Indices 293595 -- 294094
TACTTTGTACTTATCGAGGTTCTGCCCCCATATATAAGTAAGTAAGGAAAGAGGTTCTCAATACT
TTCTTACTTATGTATGTAATTACGCTCCGATCTTGAAAGAGATTGATTCTGACCGGAGTACCCTC
CCAAGGCCAAGGGGATAAGTAGATCAACCGCCCTGCCTACCCACCCACTAAGTCTCGTCCTGCCT
ACCTACCTATCCTATATCGAACTGCCTATCCGTAGCGATCTGCCTACCTATCAGTATCGATCCGC
CTACCTAAGGAAGGAAGGGGATAGTAGCGACCTGCCTACCTATCAGTATCGATCTGCCTACCTGC
CTGTCAGATTCGAGGACCCTAAAGCGGGTATTGACTATTCCATACAAATCCCAAAAGAAAAAGAC
ACTCCAACAGCAACTCTCAGAAGAAAACGATTCAAATTAGTGAATGAATTCCGATTACCAAGGTA
TTGGGTCGAGTCAATTCAGAAAATGGAATAGATAGGACATATGTA
Right flanking sequence: Indices 294159 -- 294658
GAGATCTGTATCCCAATCAATTCTGACATCTGGATAACTCTATTTTCTTTTTATTCGTCTTTCCT
TGACTGTTACCCTTCATTCCTTCGATCATACCCGATAAGGTTATAAGTGCCTAGCAACAAAGGGT
AATGAAAGGCAAGTGTTATCGAGGTGAATGCTGTCTCTCTCGAACGCCCATACAAGATGCTCTAT
GTGAACTGCCCGTACAATGTGCGTTTGGGGTATGGGTTGGGTAAGTGAGTAAGTGAAGGGTTCAT
AGATGCCGTACCCTCCTATTCCTGGCCTGGCTGAAGCAAGTGTTGTTGAGTTGGGCAGCACTCCA
CCATCTCCTAGAGTGGAAGGCAGTAAGGTCTGGTATAACAGGTGGTGGGACTAAAATGAAAGAGA
AATAGGGCTCTTCCTTTCCTAGCCAGTGGGTTCAAATTCCTAAATAGTATTTGGCTGACCTAACC
GGGTGAAGCTAGTTCGTCCCCCCAGCTCAATAGTGTTGCTACAAC
Done.