Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_037508
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 186196
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Found at i:3616 original size:14 final size:14
Alignment explanation
Indices: 3583--3618 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
3573 CAAAAAAAAG
3583 AAAAAAAACTGACA
1 AAAAAAAACTGACA
**
3597 GGAAAAAACTGACA
1 AAAAAAAACTGACA
3611 AAAAAAAA
1 AAAAAAAA
3619 TAGAAAAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.72, C:0.11, G:0.11, T:0.06
Consensus pattern (14 bp):
AAAAAAAACTGACA
Left flanking sequence: Indices 3083 -- 3582
CATCATTATTTCCTTTTTTGTAACATGGGATTTCATGCCATAACTGTTATTTGTATTTTAGTGTT
TATTGGCGCTGTTGGAAAATCTGCACAGATTGGATTGCATACTTGGTTACCCGATGCAATGGAGG
GTTTTATAATATTTGAGGGCTCTCATGTGCCATTAGGTACATTCCAACAATCTCACTGTATGCTG
GAATCGTCGACGAAATGAGAGTCCCTATCGGAAAAATATCTCATTTTGACCAATCAGCAGGAAAC
CTATTAGGGTCAAATCCACCCGGCGAAGTCAAGGCCGAAGGAGCTCTATAGGATCCCCAGAGACT
GTACGTAAGACCTCTTGTTCGAAATTGAATCTCTCCCGAACCTGCTGGCCCAAAGGGCACGAAGA
CCAGAGGGAGGGGCCCGGAGGGCAGGGGACTTTGTTTGTCTGACAGGGCCCTGGACTGTCAGACA
AACAAGGAAAAAAACTGAAAACCCCGGCTGTCAGACAAAAAAAAG
Right flanking sequence: Indices 3619 -- 4118
TAGAAAAAAACAGAGCAGAAACTTATAAGTTTTTGGAAAAATCTATATTTTTGGCGTCAAGTCTA
TTCATGTATGAAAGAAAAACCACATCTTAGTTTTTAAGGCCACAGCGGCCACCCGTAAGACTATT
GGGAGAGCCTATATTTCATAAGTGGAAGATCCAGTCCCTACTCTTGCCAAAGGTAGACTCACCAA
CCAATTACCCAATGCTGTGGAAAAAAAATATATATATTTTCCGGCCTTGTGAAATCGTAAAAGGT
TATGCGAGAGTAGCCCACTCCAGTATCCGCTTTGATTCATGCAGCTACTATGGTAACAGCAGGCG
TTTTTATGATAGCAAGGTGCTCCCCTTTATTTGAATACTCACCCAATGCTTTGATTGTTATTACT
TTTGTAGGCGCTATGACGTCATTCTTCGCGGCAACCACCGGAATATTACAAAACGATTTAAAAAG
GGTTATAGCTTATTCAACTTGTAGTCAGTTAGGCTATATGATCTT
Found at i:6336 original size:15 final size:15
Alignment explanation
Indices: 6316--6347 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6306 TCTATTATCC
*
6316 AAAAACTGACAAAAA
1 AAAAACAGACAAAAA
6331 AAAAACAGACAAAAA
1 AAAAACAGACAAAAA
6346 AA
1 AA
6348 GGGCAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.78, C:0.12, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAAACAGACAAAAA
Left flanking sequence: Indices 5816 -- 6315
CATTTATGACCTGGTTGATATATACCATCAATAGGCATGGAGCGAGCAACGTACGTTCATGCGCT
TCGCCATTTGCAGAGCTCAGGTGCCAATGGTTAGTTGCTGGTTGACAAGGACCGAAAGAGTCTCC
GATTCGCCAGTACAGAACCTCATCTTAAATACAAGAAAACCGGCTTGCTCCATACTTTTGGGTTA
CCCCCCCCCGGGGAGGGTAAATGAACCCCCCTCAACAGAGCTTCTTGCACATGCTAAGGTCTCCG
TGTTCGTTGCCGAACAAGAATGAGTGCAATGCCTTTGCACAGAAATGGACTTGTGCTTTTTATCG
TGCGGGACGGTCGCCCGATGAAAATAATAAACTTAATTCGCCAAAAACAGACCGGATCAACAGAT
TTTTAGTATCAAATGCTAATTCTTTGCTTTAGGCCATTATTGTACTGGCATTTTTTATAATAATT
AGATTAGCGCATCCTGATTTCATTGTGAATAACTATCTATTATCC
Right flanking sequence: Indices 6348 -- 6847
GGGCAAAAACTTGCTTAACAAGCGGAGGCCTACGGCCCGTAGGGCAGCGCTACGGGCTTTTTCGC
AGCATATATATTTTTCGCAGCAAAAATATATATATATTTTTTTCGGGATTTCTAGGAAAAAGAGT
AAACGTATATGTTACAAGTTTTAGCTCCATTTTATTCCAATTTAAGTGGTCTTATTTTGCTTCCT
TTGCTAGGAAGCCTTATTATTTTGGTGATCCCGAATTCAAGAGTACGTCTGATACGAGGTATCAC
AATTTGGACCTCTTTGATTACTTTTTTATATTCTCTTTTTTTTTGGATACGCTTTGAGAATGATA
CAGCAAAATTTCAGTTTGTGGAAACTATTCGATGGCTTCCGTATTCAAATATCAATTTTTATATA
GGTATAGATGGTATCTCTTTATTCTTTGTGATCTTGACCACGTTTTTAACTCCTATTTGCATTCT
TGTTGGCTTTTATAGCGTCAAAAGTTATAAAAAAGAATATATGAT
Found at i:6443 original size:20 final size:18
Alignment explanation
Indices: 6405--6441 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6395 CGCTACGGGC
*
6405 TTTTTCGCAGCATATATA
1 TTTTTCGCAGCAAATATA
*
6423 TTTTTCGCAGCAAAAATA
1 TTTTTCGCAGCAAATATA
6441 T
1 T
6442 ATATATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (18 bp):
TTTTTCGCAGCAAATATA
Left flanking sequence: Indices 5905 -- 6404
CAATGGTTAGTTGCTGGTTGACAAGGACCGAAAGAGTCTCCGATTCGCCAGTACAGAACCTCATC
TTAAATACAAGAAAACCGGCTTGCTCCATACTTTTGGGTTACCCCCCCCCGGGGAGGGTAAATGA
ACCCCCCTCAACAGAGCTTCTTGCACATGCTAAGGTCTCCGTGTTCGTTGCCGAACAAGAATGAG
TGCAATGCCTTTGCACAGAAATGGACTTGTGCTTTTTATCGTGCGGGACGGTCGCCCGATGAAAA
TAATAAACTTAATTCGCCAAAAACAGACCGGATCAACAGATTTTTAGTATCAAATGCTAATTCTT
TGCTTTAGGCCATTATTGTACTGGCATTTTTTATAATAATTAGATTAGCGCATCCTGATTTCATT
GTGAATAACTATCTATTATCCAAAAACTGACAAAAAAAAAACAGACAAAAAAAGGGCAAAAACTT
GCTTAACAAGCGGAGGCCTACGGCCCGTAGGGCAGCGCTACGGGC
Right flanking sequence: Indices 6442 -- 6941
ATATATATTTTTTTCGGGATTTCTAGGAAAAAGAGTAAACGTATATGTTACAAGTTTTAGCTCCA
TTTTATTCCAATTTAAGTGGTCTTATTTTGCTTCCTTTGCTAGGAAGCCTTATTATTTTGGTGAT
CCCGAATTCAAGAGTACGTCTGATACGAGGTATCACAATTTGGACCTCTTTGATTACTTTTTTAT
ATTCTCTTTTTTTTTGGATACGCTTTGAGAATGATACAGCAAAATTTCAGTTTGTGGAAACTATT
CGATGGCTTCCGTATTCAAATATCAATTTTTATATAGGTATAGATGGTATCTCTTTATTCTTTGT
GATCTTGACCACGTTTTTAACTCCTATTTGCATTCTTGTTGGCTTTTATAGCGTCAAAAGTTATA
AAAAAGAATATATGATAGCGTTTTTCATTTGTGAATCTTTCCTAATTGCTGTGTTTTGCTCACTC
GATCTTTTAATATTTTACGTTTTTTTTGAAAGCGTGTTAATTCCC
Found at i:14662 original size:58 final size:56
Alignment explanation
Indices: 14545--14749 Score: 256
Period size: 56 Copynumber: 3.7 Consensus size: 56
14535 GAAAAGCGAT
*
14545 TATATAAACGAAACTGAAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATA
1 TATATATACGAAACTGAAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATA
*
14601 TATATATACGAAACTGAAGTTTCTGTATATGTATATTCTATTTGAAGTTATATATATA
1 TATATATACGAAACTGAAGTTTCTGTATATGTATATGCTATTTGAAG-T-TATATATA
** * *
14659 TATATATACGAAACTTTAGTTTCTGTATATGTATAGGCTATTTTCAA-TTAT-T-TA
1 TATATATACGAAACTGAAGTTTCTGTATATGTATATGCTA-TTTGAAGTTATATATA
* ** *
14713 TATGTATACGAAACTTCAGTTTCGTGTAT-TCTATATG
1 TATATATACGAAACTGAAGTTTC-TGTATATGTATATG
14750 ATATAACAAG
Statistics
Matches: 134, Mismatches: 11, Indels: 10
0.86 0.07 0.06
Matches are distributed among these distances:
54 29 0.22
55 6 0.04
56 48 0.36
57 2 0.01
58 44 0.33
59 5 0.04
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (56 bp):
TATATATACGAAACTGAAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATA
Left flanking sequence: Indices 14045 -- 14544
TGCATCCATCTTGTTCTTGATGGCCTGCCCCTAGTCGAGTCCTCTATCAAATAATACAACAGCCG
GCAGCACGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGATCTACA
AAGTGTTCTACAAATTGCTTTATCATTGAAAACCTCAAAAGAACCGCAAAGGCTATAATTAAGCC
TAGAACGTATCAACTGCAAACTGCGCAGACTATTTATAAATAAATGAAAGGCTCAGAAAAGTCCA
GTACGCGCTGTCGTTCCGCGTACGAAAATAAAAACATAAACGTGTACAATATGCGGCCTAATTTG
GGCACTCCGAAGAAATGAATAACTTTCAAACAAAATTTTAGGGTAATCACATAAGTATAATAAAC
GCGGATTAGCGCATAAAAGCCTCCGACTGCTGCAACTAGATAGTAACTTCAGCGGCTTCTTTCCA
TAAATTCTTTCAACTTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14750 -- 15249
ATATAACAAGTCCTATATGCTATGCGTTATGCCGCACTCTGCGCCACGCCCCGGGGCCGTCTTAG
GCTTCTAAGAACCAATAACACGTAAACTATGTAAAACTAAAGCAAATCAATATACAAAAAACACG
AATTATAATTTCCTCCAAAATAGTTTTTAATACAAAATTCATTATATTTCGTCGTGTGTTGAACC
AGATCAAAACCAAGAAAACGCAAAGCAAAAAAAAATATATATATTTTTTTTTCGTTTTATTCTAT
TGGACTCTTTCAGCCTTCATTCGCGATGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTCTC
CGGATTTCACTCTTTTTTTGCGAAGTGGTTAGTAATGTACTGCATTCTTAGCTCAGTTGGATAGA
GCAACAACCTTCTAAGTTGAAGGTCACAGGTTCAAATCCTGTAGAATGCGTAAAGTGCACAATGA
ATAATATATACCAACGGTAATCCTTCTACTTGTTTAATTAGTATA
Found at i:14767 original size:114 final size:114
Alignment explanation
Indices: 14545--14760 Score: 260
Period size: 114 Copynumber: 1.9 Consensus size: 114
14535 GAAAAGCGAT
* *
14545 TATATAAACGAAACTGAAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATATATAC
1 TATATAAACGAAACTGAAGTTTCTGTATATGTATAGGCTATTTCAAGTTATATATATATATATAC
* ** ***
14610 GAAACTGAAGTTTCTGTATATGTATATTCTATTTGAAGTTATATATATA
66 GAAACTGAAGTTTCTGTATATCTATATGATATAACAAGTTATATATATA
* ** *
14659 TATATATACGAAACTTTAGTTTCTGTATATGTATAGGCTATTTTCAA-TTAT-T-TATATGTATA
1 TATATAAACGAAACTGAAGTTTCTGTATATGTATAGGCTA-TTTCAAGTTATATATATATATATA
**
14721 CGAAACTTCAGTTTCGTGTAT-TCTATATGATATAACAAGT
65 CGAAACTGAAGTTTC-TGTATATCTATATGATATAACAAGT
14761 CCTATATGCT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
112 35 0.41
113 6 0.07
114 40 0.47
115 5 0.06
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.44
Consensus pattern (114 bp):
TATATAAACGAAACTGAAGTTTCTGTATATGTATAGGCTATTTCAAGTTATATATATATATATAC
GAAACTGAAGTTTCTGTATATCTATATGATATAACAAGTTATATATATA
Left flanking sequence: Indices 14045 -- 14544
TGCATCCATCTTGTTCTTGATGGCCTGCCCCTAGTCGAGTCCTCTATCAAATAATACAACAGCCG
GCAGCACGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGATCTACA
AAGTGTTCTACAAATTGCTTTATCATTGAAAACCTCAAAAGAACCGCAAAGGCTATAATTAAGCC
TAGAACGTATCAACTGCAAACTGCGCAGACTATTTATAAATAAATGAAAGGCTCAGAAAAGTCCA
GTACGCGCTGTCGTTCCGCGTACGAAAATAAAAACATAAACGTGTACAATATGCGGCCTAATTTG
GGCACTCCGAAGAAATGAATAACTTTCAAACAAAATTTTAGGGTAATCACATAAGTATAATAAAC
GCGGATTAGCGCATAAAAGCCTCCGACTGCTGCAACTAGATAGTAACTTCAGCGGCTTCTTTCCA
TAAATTCTTTCAACTTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14761 -- 15260
CCTATATGCTATGCGTTATGCCGCACTCTGCGCCACGCCCCGGGGCCGTCTTAGGCTTCTAAGAA
CCAATAACACGTAAACTATGTAAAACTAAAGCAAATCAATATACAAAAAACACGAATTATAATTT
CCTCCAAAATAGTTTTTAATACAAAATTCATTATATTTCGTCGTGTGTTGAACCAGATCAAAACC
AAGAAAACGCAAAGCAAAAAAAAATATATATATTTTTTTTTCGTTTTATTCTATTGGACTCTTTC
AGCCTTCATTCGCGATGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTCTCCGGATTTCACT
CTTTTTTTGCGAAGTGGTTAGTAATGTACTGCATTCTTAGCTCAGTTGGATAGAGCAACAACCTT
CTAAGTTGAAGGTCACAGGTTCAAATCCTGTAGAATGCGTAAAGTGCACAATGAATAATATATAC
CAACGGTAATCCTTCTACTTGTTTAATTAGTATAAAGGAACAACG
Found at i:18763 original size:14 final size:14
Alignment explanation
Indices: 18744--18774 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
18734 AAAAAAAGAA
*
18744 AAAAAACTGACAGG
1 AAAAAACTGACAAG
18758 AAAAAACTGACAAG
1 AAAAAACTGACAAG
18772 AAA
1 AAA
18775 CTGACAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.13, G:0.16, T:0.06
Consensus pattern (14 bp):
AAAAAACTGACAAG
Left flanking sequence: Indices 18244 -- 18743
AACTTATCAGTTTTTGGAAAAATATAGATTTTTTATTTCGGTATTAGGACTAGATATTAATGTTG
AATCACTCGGCCTCCCATGGAGCCAGTCTCTTGCTCCAGGGGAGGGGCTCAGGAGATCCAATGGC
TGACTGGTCCGCCTCACGGCGGACAGAGTCATACCCTATGCGAATTTATGTATATATATCTTCAT
TTATGGCGGAAATAGCTTAATGGTAGAGTATAGCCTTGCCAAGGCTAAGGTTGAGGGTTCAAGTC
CCTTTTTCCGCTTGGAGGGTTATTTACCGGTCTTTCGTTTAACAGGGACGAAATATTTGTGATCA
TCGGCGAAGCAAGCAGAAGGCGCGAGAAGTTAGTGGCTTCTCTTCCCTTTGTTCGTCTTTTCTAT
TTTGTGTTTTTTGTCAGTTTTTTTCCATTTATGTGTCGGGGATAGAGCTAAAGCCGAGACAAAAG
GCCCGTAGCGCGGGGTACTGTCAGACAAAAAAGAGAAAAAAAGAA
Right flanking sequence: Indices 18775 -- 19274
CTGACAAAAAAAGGGCTTTTGGAACCCCAAAGCTTTCTGGGAGAGGGCCGAAGGAGGCTATCTCC
CCGATAGGGTATAGGGCTGAAGCTCTCCCGGGCCGTAGGGATATATATATATTTTTTTTTGCTTT
GGGTTTTCTGGATGGTTCTATAAGCGTTATATGGAGGTGCATTCCCTTTTGTTTTCTCGTTGCGC
AGCGAAAAAACAAAACTTTTTTGGACGTCGAAGACACGGGTTCAAATCCCGTAAGGGGCGAAGCA
CCTACCGTTACTACGGTTGCTCTAAAAGCAGAGCGAAAAGGCTTTCTGGTGCACGGATTTTGACA
AAAAAAAAATACTTTACAATAATAAATAAGAATACTATTATGCAAAAAGACAACTTGTTTTATGA
ACCATTAATTATAAGGTTAGAGTACCTATTAGGATTTTTTTAAACCGATGGTAGCTTACAGATTT
TATTCAAAAAAGATGCTCGTATGACTTTTGGTTATTACATTCGGC
Found at i:36662 original size:24 final size:24
Alignment explanation
Indices: 36635--36680 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
36625 TCCGATGAAT
* *
36635 GATACTTTATAATGCAATTACAAC
1 GATACTTGAAAATGCAATTACAAC
36659 GATACTTGAAAATGCAATTACA
1 GATACTTGAAAATGCAATTACA
36681 TAATAAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (24 bp):
GATACTTGAAAATGCAATTACAAC
Left flanking sequence: Indices 36135 -- 36634
CGAGCTGACTTGCCCGGCCCCTGACATAGCTCAGGGAAAGGCTGGGGTGAATCCTCTTTCCTCAT
GGGCCTCTGAAGAGCTAGTAGAAGGGGCATATGTTGGAGTCCACATGGATAAAGGGCCGGGAACC
CCAAAGAAGTCTACTTCGGATCCTTAAAAGTAAAATTACCAAAGGGATAACAACTATTAGGAAGT
TCCTGCCCTTTTATTACAAACGGATGGGAGGATCATTCCCGTAAGCTACAAGGACTCTTTGAATT
CTGTCAAGCGTGCTGTTAGGGAAAAGAAGGCCGTGGGTCCCTGCCTTTTATTACCATATTTATCT
ATGAGAATTCATCGGATTCAGCCTTTATCTATCTATGGGGGTTCTTCCTTATTTATCTATAATGA
TTCTTCATTTCTCTATGATTATTCAAGGCTAGGGACGGAAACGAGCTATTCATCATGGAATTACA
TAGTTAATAGCATAACTGGAAAATTCATCGTATATTCCGATGAAT
Right flanking sequence: Indices 36681 -- 37180
TAATAAATTGCATTTTTAAGCAAATTAATAAGGCGGACAATGACCGACTTGGACTCTTCCGGACT
TGAGCGAACGTATAAAGGCTGAAAAACTAATACACGTCCGTGAGGCCCAAAATATCTTTTTTTCT
TCTTAGCCTTTTTTATTAATGTTGATTAATCAAATCCTAAGCATTAATATAATATTATTTGGGGG
AGCCAAGGTGTAGCGCAATCTGGTAGCGCGTCTGCCTTGGGCGCAGAAAGTTACAGGTTCAAATC
CTGTCACCTTGAATCAAAATCGGAGTCAACTAAAAAGATGAAAATAAATCGACCGTTATCACCTC
ACCTTACCATCTATAAGCCACAACTTACTTCGACGTTTTCTATTTTTCATAGAATATCCGGGGCT
TTCTTGGCCACTATGGTTTTGTTTAGTATTCTTTTTTTTAAAATAGGTGATCTTAGCCTTACGTT
TTATCATTTTTACCAGTATTTTTTTTTTTTAACTTTCTATTTGAA
Found at i:37505 original size:21 final size:21
Alignment explanation
Indices: 37468--37509 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37458 TTAGCTGGCT
37468 TATTTTTTTTACCTATTTTCAG
1 TATTTTTTTTA-CTATTTTCAG
37490 TATTTTGTTTTA-TATTTTCA
1 TATTTT-TTTTACTATTTTCA
37510 AACTTTATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 6 0.32
23 5 0.26
ACGTcount: A:0.19, C:0.10, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTTTTTTTACTATTTTCAG
Left flanking sequence: Indices 36968 -- 37467
AACTAAAAAGATGAAAATAAATCGACCGTTATCACCTCACCTTACCATCTATAAGCCACAACTTA
CTTCGACGTTTTCTATTTTTCATAGAATATCCGGGGCTTTCTTGGCCACTATGGTTTTGTTTAGT
ATTCTTTTTTTTAAAATAGGTGATCTTAGCCTTACGTTTTATCATTTTTACCAGTATTTTTTTTT
TTTAACTTTCTATTTGAATTGGTTCATTATAAGCTTAGTCAATTTCACTTTATTAGCGTTGTGCT
ATCATATGAGTAATGGAGTTCGTCATTTATTGTGGGATTTGGGTTTTTTTCTAGAATTATCTAAA
GTGTATACTTCCGGAATTATTATGTTATTCTGTGCAGCTTTTTTAGCTTTATTGAATATTATCCG
ACAGCACTGGTCAAATGGCCAAATACCTTATTAAATTAGACAAAAAAAAGGAAATATTCTGAATC
ACTATCAGCACTGGCCAAAACGGCCAAATACCACATTAGCTGGCT
Right flanking sequence: Indices 37510 -- 38009
AACTTTATGTTAGCCCAAAAATGGTCTCAATCTTAGCCACCATTAAAACTCTTTTGATATACCTT
GGAGTCAGGAACAAACTGCAACCCTATTTCTAATTTTATATAATATATCTGCTAAATTCCACAGT
GTTTCAGTTCATTTTGTTCAAAATGTTATGCTTCGAGCAAACGTTTCGTCTTTTTAGGGTTTTAT
AATTTTTGACCTTTTTTCAAATTGGGATTCTTTTTGCTATCTCCATATTTCCTTCCAGTAATGAA
CTCGTAAGTGTTTTAGCAAAAATAGTCATTGTGTTTATAATAATCTACTATCGATTAAGACGCGA
TTTTTTTGTGTTTCAAACTACCGAAAATTCACAAAAAATAAGAACGTGGGATTTGATATTGAGTA
AGCTCCGGGATGCTATTCAACAACAGTTGGCCGGCTACAGGGAGAATATTGAAGAGTTTATAGGG
CCTTTTGTAAATAAACTAACAAACAAATCCTCAGTGACCTTCCCG
Found at i:38278 original size:21 final size:21
Alignment explanation
Indices: 38254--38297 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
38244 AAAGATGAAG
*
38254 AGCTTGCCCAAAATGAGAAAA
1 AGCTGGCCCAAAATGAGAAAA
*
38275 AGCTGGGCCAAAATGAGAAAA
1 AGCTGGCCCAAAATGAGAAAA
38296 AG
1 AG
38298 TATGAGCTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.16, G:0.25, T:0.11
Consensus pattern (21 bp):
AGCTGGCCCAAAATGAGAAAA
Left flanking sequence: Indices 37754 -- 38253
TCCTTCCAGTAATGAACTCGTAAGTGTTTTAGCAAAAATAGTCATTGTGTTTATAATAATCTACT
ATCGATTAAGACGCGATTTTTTTGTGTTTCAAACTACCGAAAATTCACAAAAAATAAGAACGTGG
GATTTGATATTGAGTAAGCTCCGGGATGCTATTCAACAACAGTTGGCCGGCTACAGGGAGAATAT
TGAAGAGTTTATAGGGCCTTTTGTAAATAAACTAACAAACAAATCCTCAGTGACCTTCCCGTTTT
TTACACAAAAAAGGTCTTATTATGCTTCAGCTGCAAGAGAAGCACCCCGTGGTGGATCTGCCGCT
AGAGCCGGTAATTCTGCGGTACAGTGGGCAACTGATTGGGCCTAGTAAAATTTTTGGGGAACCCT
GCCGTCTATTGCTGTCATTGTAGGCGGGGCGGGGTTTTTCGGTTATAAAATATATGACAATGAGC
GTTTTCACGCTCGAAAAGACCGAGCTCTGGACCAAAAAGATGAAG
Right flanking sequence: Indices 38298 -- 38797
TATGAGCTGGATAAATAAAAGTATGAGCTGGATAAAGGAAAGTTTGAGTACGAAAAGTCGAAAAA
AGGGAGGCCATGGAAGATCTTAACGCCCCGACTCCGGAGGATGCACAGTAAGAATTTCTTCAAAA
GCCTGGAGGGCTTTCAGCCGGAGGAGCTCATAACAAACCAATGGGCTTTTTGAGCCTACGGCCGA
ACGGGATACGTTTAATATCTTCGATTTCTTTTTTTCACTTTTCTAACGGAAAGAGCAGCGCTACG
CGCCTGGCTTTGTTGTTTTAGCCAAAACTAATCTTTTTTTAGCTATTACCTTGTCTATTACTATG
TTTTCATACGCAGGAATACCCCCGTTAGCTGGATTTTGTAGCAAATTCTATTTGTTTTTTGCCGC
TTTAGGCTGTGGGGCCTACTTACTAGCCTTAATAGGAGTAGTTACTAGCGTTATCAGTTGTTTTT
ATTATATACGCTTTGTGAAAATAATGTATTTTGATACACTTAAAA
Found at i:38317 original size:21 final size:21
Alignment explanation
Indices: 38293--38333 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
38283 CAAAATGAGA
38293 AAAAGTATGAGCTGGATAAAT
1 AAAAGTATGAGCTGGATAAAT
38314 AAAAGTATGAGCTGGATAAA
1 AAAAGTATGAGCTGGATAAA
38334 GGAAAGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.24, T:0.22
Consensus pattern (21 bp):
AAAAGTATGAGCTGGATAAAT
Left flanking sequence: Indices 37793 -- 38292
AGTCATTGTGTTTATAATAATCTACTATCGATTAAGACGCGATTTTTTTGTGTTTCAAACTACCG
AAAATTCACAAAAAATAAGAACGTGGGATTTGATATTGAGTAAGCTCCGGGATGCTATTCAACAA
CAGTTGGCCGGCTACAGGGAGAATATTGAAGAGTTTATAGGGCCTTTTGTAAATAAACTAACAAA
CAAATCCTCAGTGACCTTCCCGTTTTTTACACAAAAAAGGTCTTATTATGCTTCAGCTGCAAGAG
AAGCACCCCGTGGTGGATCTGCCGCTAGAGCCGGTAATTCTGCGGTACAGTGGGCAACTGATTGG
GCCTAGTAAAATTTTTGGGGAACCCTGCCGTCTATTGCTGTCATTGTAGGCGGGGCGGGGTTTTT
CGGTTATAAAATATATGACAATGAGCGTTTTCACGCTCGAAAAGACCGAGCTCTGGACCAAAAAG
ATGAAGAGCTTGCCCAAAATGAGAAAAAGCTGGGCCAAAATGAGA
Right flanking sequence: Indices 38334 -- 38833
GGAAAGTTTGAGTACGAAAAGTCGAAAAAAGGGAGGCCATGGAAGATCTTAACGCCCCGACTCCG
GAGGATGCACAGTAAGAATTTCTTCAAAAGCCTGGAGGGCTTTCAGCCGGAGGAGCTCATAACAA
ACCAATGGGCTTTTTGAGCCTACGGCCGAACGGGATACGTTTAATATCTTCGATTTCTTTTTTTC
ACTTTTCTAACGGAAAGAGCAGCGCTACGCGCCTGGCTTTGTTGTTTTAGCCAAAACTAATCTTT
TTTTAGCTATTACCTTGTCTATTACTATGTTTTCATACGCAGGAATACCCCCGTTAGCTGGATTT
TGTAGCAAATTCTATTTGTTTTTTGCCGCTTTAGGCTGTGGGGCCTACTTACTAGCCTTAATAGG
AGTAGTTACTAGCGTTATCAGTTGTTTTTATTATATACGCTTTGTGAAAATAATGTATTTTGATA
CACTTAAAACATGGATTTTATATAAACCCATGGATCGTGAAAAAT
Found at i:38339 original size:21 final size:21
Alignment explanation
Indices: 38293--38345 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
38283 CAAAATGAGA
*
38293 AAAAGTATGAGCTGGATAAAT
1 AAAAGTATGAGCTGGATAAAG
38314 AAAAGTATGAGCTGGATAAAG
1 AAAAGTATGAGCTGGATAAAG
* *
38335 GAAAGTTTGAG
1 AAAAGTATGAG
38346 TACGAAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.45, C:0.04, G:0.28, T:0.23
Consensus pattern (21 bp):
AAAAGTATGAGCTGGATAAAG
Left flanking sequence: Indices 37793 -- 38292
AGTCATTGTGTTTATAATAATCTACTATCGATTAAGACGCGATTTTTTTGTGTTTCAAACTACCG
AAAATTCACAAAAAATAAGAACGTGGGATTTGATATTGAGTAAGCTCCGGGATGCTATTCAACAA
CAGTTGGCCGGCTACAGGGAGAATATTGAAGAGTTTATAGGGCCTTTTGTAAATAAACTAACAAA
CAAATCCTCAGTGACCTTCCCGTTTTTTACACAAAAAAGGTCTTATTATGCTTCAGCTGCAAGAG
AAGCACCCCGTGGTGGATCTGCCGCTAGAGCCGGTAATTCTGCGGTACAGTGGGCAACTGATTGG
GCCTAGTAAAATTTTTGGGGAACCCTGCCGTCTATTGCTGTCATTGTAGGCGGGGCGGGGTTTTT
CGGTTATAAAATATATGACAATGAGCGTTTTCACGCTCGAAAAGACCGAGCTCTGGACCAAAAAG
ATGAAGAGCTTGCCCAAAATGAGAAAAAGCTGGGCCAAAATGAGA
Right flanking sequence: Indices 38346 -- 38845
TACGAAAAGTCGAAAAAAGGGAGGCCATGGAAGATCTTAACGCCCCGACTCCGGAGGATGCACAG
TAAGAATTTCTTCAAAAGCCTGGAGGGCTTTCAGCCGGAGGAGCTCATAACAAACCAATGGGCTT
TTTGAGCCTACGGCCGAACGGGATACGTTTAATATCTTCGATTTCTTTTTTTCACTTTTCTAACG
GAAAGAGCAGCGCTACGCGCCTGGCTTTGTTGTTTTAGCCAAAACTAATCTTTTTTTAGCTATTA
CCTTGTCTATTACTATGTTTTCATACGCAGGAATACCCCCGTTAGCTGGATTTTGTAGCAAATTC
TATTTGTTTTTTGCCGCTTTAGGCTGTGGGGCCTACTTACTAGCCTTAATAGGAGTAGTTACTAG
CGTTATCAGTTGTTTTTATTATATACGCTTTGTGAAAATAATGTATTTTGATACACTTAAAACAT
GGATTTTATATAAACCCATGGATCGTGAAAAATCGTTACTACTAG
Found at i:44022 original size:76 final size:76
Alignment explanation
Indices: 43935--44087 Score: 229
Period size: 76 Copynumber: 2.0 Consensus size: 76
43925 TTTTTCTTTT
*
43935 TTTTCCATTTTTTTCAATAAAAATTCTTATTTCATA-TTGTATTATCGTACTTTAATA-CTTCAT
1 TTTTCCATTTTTTTCAATAAAAATTCTTATTTCATACTT-TATTATCGTAATTTAATATC-TCAT
43998 ATACGATGCATCA
64 ATACGATGCATCA
* * *
44011 TTTTCTATTTTTTTCAATAAAAATTGTTATTTTATACTTTATTATCGTAATTTAATATCTCATAT
1 TTTTCCATTTTTTTCAATAAAAATTCTTATTTCATACTTTATTATCGTAATTTAATATCTCATAT
*
44076 ATGATGCATCA
66 ACGATGCATCA
44087 T
1 T
44088 CAAACCGTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
76 67 0.96
77 3 0.04
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (76 bp):
TTTTCCATTTTTTTCAATAAAAATTCTTATTTCATACTTTATTATCGTAATTTAATATCTCATAT
ACGATGCATCA
Left flanking sequence: Indices 43435 -- 43934
TACGATGGTTTAGCGACGACCCACTTTTAGATGCCCTTATATATTAATGATAAGAAATATATAAG
GGTTTCACTTTCATATTGGCCTGAAGAACGAAAATGCTAGTCGCTATACAGCGACGAAGCAAATA
CGCTTCGCGTATCCCGAGTTCGAAAACCGACAGTGTAACGTGTCATTTCATAAGGGCAGGAGTAA
CCGTCCTGGCATCTGGCAAGTGGATGGATCGAACCGCCGGTCGAGCCCTCAGAGATCGGGAATGA
TTTCCTCTGACCCGGGTCCAAAGTGAAAAGATAATAAAAAGAAAATAGATATCGGCCATCCTGTC
CCTGTTAATAATGGAAACGCTACGCTTCTCAAGTACTAGGTTCCCGCCGCCAGCACCACGTCTAC
AAAAGAACGGCGGCCGACCCAGCGCGGAAGGCGAAGGTATTGTTTCCTGTCTGTCCGTCGTAGAC
GGCTAATTGTCGTAGACGCTTAGCCGTCTACCCAGTTTTTCTTTT
Right flanking sequence: Indices 44088 -- 44587
CAAACCGTTTTAGTTCTAAAAATCTTGAAAAATGCGTTTCAAAATTTTGAAACTACATGAAAATT
TGTTTAAAAAGATCCAATTCTACTAATGGTTTCAAATTTACTAAATTAGTAATATCCATCAATAA
AGCCCAAAATTATGCAGGCACAGGTAATGAAAACGAAGTGTAATGTCTTTTACGGAATAATTAAA
AATAGAACTCCCCGAGTAGTGATACCAATTTCAAAAATAAACTATAGACAGATCCCAGGCATATT
TTCTAAATATAGTTCGAGAGGATTTGCTATAGGTGTAACCTCGGATATCTCGCCTGTGTTACTGG
TAAAGGCGACGGATTTCTCTCTATTTCTTTCTTTTGGAAATACTGAGACCGTATTTTCATCGCGA
CTGCGGTCGACTTTTTCGAATTTGCCGCGGCTTCCAATAATGACTTTTTAGAGGGTTCATTACCC
TGGGACGGTTTAGTTCTTTGTAACAAGAGGGCCGCGCCCCCAATT
Found at i:48646 original size:25 final size:25
Alignment explanation
Indices: 48606--48661 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
48596 TTTTTTTTCT
* *
48606 GACAGT-CCCCCTGGGGCCCTGTCG
1 GACAGTCCCCCCAGGGGCCCTGTCA
*
48630 GACAGTCCCCCCAGGGGCCTTGTCA
1 GACAGTCCCCCCAGGGGCCCTGTCA
48655 GACAGTC
1 GACAGTC
48662 GCGGGCCCCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.14, C:0.39, G:0.30, T:0.16
Consensus pattern (25 bp):
GACAGTCCCCCCAGGGGCCCTGTCA
Left flanking sequence: Indices 48106 -- 48605
ATGGCTTCTGTTGCGCGGCTTGTATTTTTATTCTGCAATTCGAACCAATCCCAATTTACTTTAAA
GGGCCCTTTATGCTTTATTATAGTACAAACCCCTTTCTAATTTCATTTTACCCAATGCAGGTTCA
ACTTGAGACTCTGGCGGAGGCCTTTCCGTCACTGCAGATTCCGTATCAGTATAATAGTAGGACTC
TGTTCGAATAAACGGATACATATGAATCCGTGCGTGAGCGGTGACCGCCGCATCAATTTGAACTG
TAACGTTTAAAACCACTTTTTTCTTTATAAGACTCGCCTCTACCACAGCTGCATGTCTCAGGACA
TCCGGAGACTGATCGCCCATCACCTGCATTTCATCAAGATAGGTTATGAAAAAACGTTCCATATC
CAATTCGTGGAAACTCAAAATGCGGTAACACTAATCTTTCCGATTTTTCCTAAAACCCTGTCAGT
TTTTTTCTTTTTTTGAAAGCATCCGTTTTTTTCCTTTTTTTTTCT
Right flanking sequence: Indices 48662 -- 49161
GCGGGCCCCGCCCTTCAAACTCCACCACACTATACAATTGATCTAAGATGTACAATTATATGTAT
TATACCCGAAATCATCAACAACCAAAAAATACAATGTCTTTTTTTTGTAATGAATCATCGTAGAT
AATTCATTACTTTTGGGGAAATAGCTTAGTGGTTTATAGCGCTGGTCTGTCAAGCCAGAAGTCGC
GGGTTCAAATCCCGTTTTTCCCGGTGAAACTTTAATTCAATTATAAAACCCAGTTCATCAAGATA
TATATATTTTTTTCCGAAAAAAGCAGCTTAGATAAGCTTTTTTTTAAGCTTCGGCATACTGGCGG
AGCTCTTACACCCCGCATCCTCCGCGCATATGCCGAAGCCAAGGTAATCAAAAATATTTTTTTGT
TTTTTTTTTGGAGGTATGGCTGAGTGGTTGAAAGCATTGGTTTGCTAAATCAGTGCGACAAGAAA
CTGTGCAATGTAATGTGGTTCAATTCCACAGGACGTAACCCCCGT
Found at i:70566 original size:27 final size:27
Alignment explanation
Indices: 70536--70591 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
70526 ATAAACACTC
*
70536 ATGCAAAAAAAGCACGGTATTACTAAT
1 ATGCAAAAAAAACACGGTATTACTAAT
* *
70563 ATGCAAAAAAAACACTGTATTACTTAT
1 ATGCAAAAAAAACACGGTATTACTAAT
70590 AT
1 AT
70592 TCAATCAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.48, C:0.14, G:0.11, T:0.27
Consensus pattern (27 bp):
ATGCAAAAAAAACACGGTATTACTAAT
Left flanking sequence: Indices 70036 -- 70535
AAAATAAATCATGTCATATATTTTAGGAACTAATTTAAATTCCAATAAACAAGTAAAAATTGCCT
TAACTCGAATCTTTGGAATTGGCCCTAAAAAGGCAATTCAAGTTTGTGATCAATTAGGCCTCAGC
GATACCATTAAGGTTAATAAGTTAACTAAGTATCAATTTGACCAAATTCTAAAAATAATAAGTCA
AAATTATTTAGTTGATTCAGAATTGAAGAGAGTCATTCAGAGAGACATCAAACGATTAATTAGTA
TTGGTTGTTATCGTGGGTTTCGCCATAATGCAGGATTGCCCTTACGCGGCCAACGAACTCATACT
AATGCTAAGACTTGTCGCAAATTAAGATACGTTTCGATTAGAAGTTGATAAAAAATTTATATATT
TTTTTTCAGTTTGTACAAAATATCTTTGTAATTAGTAAACGGATTAGATGGATCATAAAAAAACA
AAATCGATGATATCAAACAACACCAAAAACATTCAATAAACACTC
Right flanking sequence: Indices 70592 -- 71091
TCAATCAACTTTTGGTAATACAATTATTACTTTAACAGATTATAACGGAAATACAAAAACTTGGT
CCTCCTCAGGTTCAGTGGGGTTTAAGGGATCTCGTCGCTCAACCAATTATGCTGCTCAAGCAACT
GCAGAAAATGCCGCGCGAGTTGCCATTCAACTTGGATTTAAGTTTGTTGAAGTGAGAATAAAAGG
ATTAGGTTATGGAAAGGAATCTTCGCTACGTGGTTTAAAACTAGGAGGTCTTATTATTACCAAAA
TTCGCGATGTAACCCCAACGCCACATAATGGATGCCGACCCCCTAAAAAACGTCGTGTTTAAATA
TCACCATAAAGTCCTATGTCATCATAAAATGGTAAATTGAGGTTCAAGAGTAAAAAAAATTTTTT
TAGGGTCCGAAGGAGACTTCTTTGGCTTTACAGGGCTTAACCCTTCTTTCGTAAAGGCAAAGAAG
GAAATCTACAAGCCATGTCTGGCCTTCGGCCCTTCGGACCCACAA
Found at i:99749 original size:10 final size:10
Alignment explanation
Indices: 99734--99759 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
99724 AGAGATATAG
99734 ATATATCTAT
1 ATATATCTAT
99744 ATATATCTAT
1 ATATATCTAT
99754 ATATAT
1 ATATAT
99760 AGAATTGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (10 bp):
ATATATCTAT
Left flanking sequence: Indices 99234 -- 99733
TGCTAAATGACTAAATTTCGCTAATATGACTAAATTCCGAGGATTTGTAGATAAATATAGATAAT
TAATACTCTGGAATCCTCATCGCTAATGACACCTTCGCGAAATGACGCATATTTAGCTAATATGA
CTAAACTTGTTGAGGATCTGTAGTATAATATAGAGGAATACCCTTTAATATGGAATTAAAGGGTC
GGGAAGGGAATATATCATAGAATTATATATGGAATATGGAATAATTCTATAGAATTAAAAAGGGT
TAATCAATTAAATTAAAATAAATAGAATAAATTAATAAATTCATAAATAAAAGAAATTCAAATAT
ATATATATATATATTTATATATAATAGAAGAAATGCATAAATAAAATAGATTCTATTATTTATAG
AAGAGACTTTTCAATCCATGTTTATTCTTCGCTCATCTTCCAAAAGAAAATGAGCTACTATTTTT
CTTCTTCGAAGAAGAGGATGAGCTGCAATAGATATAGAGATATAG
Right flanking sequence: Indices 99760 -- 100259
AGAATTGATAGGTCAGGGAAGATAGCCTTGACCTCTAACCTTTGAGGATACTGAAGGCCTAGATC
TTCCCCTACTTGGGTTACCATGTTTTTGAGATCTGTTATATAGGCCTCTAGTTTTCCTTCGGGAA
CGCCCAAAGACTTCCATCATGGAAGTGACATAGGAACTCCGGGCGGGGTTCATGGCACTTCTCAT
AGAACCTTAGGGACGCTTCCGCCAGGAGTCCAAACTAATAGGACTGAAGATAGGAAGCATAGACC
GAGGAGAAACGTATTTTCGGTTACGCAGTACGTACGGCCTGTAGGTCCTGTAAGCATCTTGTCCT
TATGCAGTTTGTAAACGGTGTCCGCTATATTCCGAAGATCAAGAATTCTATTTGTTTGTTGGAGG
GCGGAGAACTTGGTTTTGTCGGACACCACAAAACCAAAATACTGTCCGACAAAACAAAAGCCACT
TATGACCTCTACAGCCTTGGCATACCTTTTAGGATAATCTGGCAA
Found at i:108834 original size:19 final size:19
Alignment explanation
Indices: 108812--108850 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
108802 TATCAATTTT
* *
108812 TGAAAAATATATATATAAA
1 TGAAAAACAAATATATAAA
108831 TGAAAAACAAATATATAAA
1 TGAAAAACAAATATATAAA
108850 T
1 T
108851 ATCTACCAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (19 bp):
TGAAAAACAAATATATAAA
Left flanking sequence: Indices 108312 -- 108811
TAGGCGGTTAAGAAGCTCGTCATATGACACACAGCAAAAAGCCTGGTATAGGGGGTTGGGGTAGC
GAGCCCCACGAGCCAGTCCTCAGACTCATTTGGCGGTTAGGCACGTAGTGCTCTCGCTTTGGTCC
GAAGGGTCTGAAGGAGACTTCTTTGGCTTTACAGGGTCCAAAGGATACTTCTTTGGCTTTACGAA
AGAAGCGCCTAAGGCCGGAAATGGCAGGTCCGTACACGATATTGGGAAGAAGGCACGTAGTGCTT
CTTTGGCTTTACAGGGTACGAAGGCCCGGAAATGGCTTTACGACGCACACGAAGACCCGATAGGC
ATATCGTGTGCGGAAATCGTAAAGCCATTTCCGACCTCTCGGCGCTTCTTTCGGCCTTCTCTTGT
TTACGGCCTCTGCGCTGCCTTCGTCCAATGAAAGCCAGTGAAAGGAGGAGCCGGCCTCGCTTTTC
ACCTATCAGGTTGAAGGCGCTTAAAAATTGATATATATCAATTTT
Right flanking sequence: Indices 108851 -- 109350
ATCTACCAGTTTTACGAAAAAAAAAGATACGATTTATGGATAACCAATTGTTTTTCAAATCTCTA
ATAGCTACTTTACCAAAAAGGATACATAAATGTCAAACAGTATCTAAAGCACCTGAAAACTGCGC
GAAGATGCCCAAAAGCATCCAATTTCGAGGATTCAGTGGAACCGGTGAACCATTTGGACGTTTGG
ATTTCCGAATGGGGCAGAGGGCCTTTAGCTATGAAAGGCAAAGGCCAAAGGCCTTTCTAAGCTTT
AGCTCTCTCCCTGGTAGAAGAGAAGGTTCGGCTTGGACCGAGCGTCTTCGTGCCCTTTGGAAACA
CTGTAAAAAAGAGCAGTTCAAGGCAGAAGGCCTGTTTCGGCTCATAAAAGACATAAATCTGTGGA
TAGCGGCCTATAAGAAGCTGTCACCAGGCTCAAAGAACGATGGTGAAAGGCCGAAAGGCACCTCG
ATCAAAGCACTAGAAACACTGAGAGACTCGGTGATAAACCCCCCC
Found at i:127100 original size:21 final size:22
Alignment explanation
Indices: 127068--127110 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
127058 TTAAAGTAAG
127068 AAAAACCACTAC-AAAGAAACA
1 AAAAACCACTACTAAAGAAACA
*
127089 AAAAATCC-CTACTACAGAAACA
1 AAAAA-CCACTACTAAAGAAACA
127111 TATGAGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.60, C:0.26, G:0.05, T:0.09
Consensus pattern (22 bp):
AAAAACCACTACTAAAGAAACA
Left flanking sequence: Indices 126568 -- 127067
ATAAATATCCCTTCAGCTTTCCTTGTCTTAGTAAATGAAAACTCTTCATCTTTGAAAACTCGGGC
AAACCGTCCCAAAGGCGCGTAGCGGAAGTAAAGGAAGGTATACGGGCATAGATTGGAAAAAGATA
TGATAGATACATAAAATATGACATTGTCATCAAATATACAAATAGAACTCGAAGGAATGCCAAAT
ACAGGAAGGGGTAGGCGGGGCAGGCTGGCGCCTACCCCGAAAAAGAGGGCCTGGCTCGGTCAAGT
CCCTAACTACAACTTTCGGGGCGGGCTCCGCCCTATAAGGACTAGGTCTGTATAGGGCGGAGCAG
GTCAGTGCTTAAGTTGCACAAATTGCTAAGACGTCTAAATGCTTTCCTTGATAGCTGGAAGTTCT
TCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCCATTCAAGTGTCGTTGAATTCTGTTCAAC
AGCCCAAGGACTTGGAGCACACTTGTTTTCACTAGTTAAAGTAAG
Right flanking sequence: Indices 127111 -- 127610
TATGAGCCAAAACTACTAAAGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGACG
TGGCATACCTGCAAGCGGTTTTTTCCTTATTTATCAAATGTTAATGGATTGTGACTAAATATTTT
TCCTTTGTAAACTTCATCTGAAATTAGTCTTTTAGACTTTTCAGTGTGTTTAAATTCCAATGTTG
AATCAGTTCTTTTATTGATATTAAGAACTGGTTTATAAAGATCTAAATAGTACTGTTCTCGAGCT
AAATAATCCTTTTTAGTAATAGTACCTGTTGAACCACATAACTCAATAATAACTAAACTAAAATT
GTCATGACCATATTTCCAAATAGAATTCTAAATATATTTGTTATCAGATAATTTAGAAGGGTGAT
AGTATTCAGCAAGTCTATCGCTTTATTTATAACCACTACCTACATATTGTTTACTATTAACTAAA
TTATGCCAAAGATAGATTCCAGTTTTCGTTAGATAATCAGAAACG
Found at i:128875 original size:13 final size:13
Alignment explanation
Indices: 128857--128889 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
128847 GTATCTGCCC
128857 TTTTTTTGTCAGT
1 TTTTTTTGTCAGT
128870 TTTTTTTGTCAGT
1 TTTTTTTGTCAGT
128883 TTTTTTT
1 TTTTTTT
128890 CCCTTTTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.06, G:0.12, T:0.76
Consensus pattern (13 bp):
TTTTTTTGTCAGT
Left flanking sequence: Indices 128357 -- 128856
ATAAAGCAAAAACGGCTCCCATAGAAAGAACATAATGGAAATGTGCAACCACATAATAAGTCAAC
TTTACCTAGATATTTTCATATCTACTTGGACTATATCATCACTCCGTCGATCCTACTATTGACCA
ACAGATGTGTTTGGCCTATAGTCTCTGAGAATCCTACTCCCCATAAAGCGCAAAGGCCGTAGGGC
CCGAAGGGTCCGAAGGAGCCTTTTTTGGCTTGTAAGGGCCCTTCGGGCCTCTCCCGTTGGTCTCG
GGGAAAGCCCGGAAATCGTAAATTTCCGGAACGTCCGCCCTTTTCTGACAGTGCCCCGACCTGTC
GGACAGTCGCACGCCCTCCGGCCCTTTTTTTTGAGTTTGGTTTCCGGCGGATTGTCCATTTCAGT
AGATTTTAGATCTACGTCATACTTAGGATTATTACTGAAGCCCAAGGAAGGCCGTAGGCCGCAGC
TGAAGCCCGGAAAACGTAAAGCCAGAAACTTCACAGTATCTGCCC
Right flanking sequence: Indices 128890 -- 129389
CCCTTTTTTGTCTGACAGTACCCCGCCCTACGCGCGAAACGTTACGGCCTCCGGCCCGTAAATCG
TCAAGCCGTTTCCGCCCGTAGGTACGAAGAGCCGAAGACCAGAAATGGCTTGACGATTTACGCGC
ACGATATTTAGTCAGCGCTACGCGCGTAGCGCATAAACTGTTAAGTTTATGGCCCCGCAGGTAGA
CCCCCCGATAGGTTATAGGCCCGGAGGCCCATAGGCCCGGGGGGCATAAAGGGTTTTACTATTTA
CGGGTTTACGTTTTCTGGGCGCCTTCGGCGCCGGAGCGCAAAAAATAGATTTTTTTTGCTTGCTT
CTTCTCTCGACCTTTTTTCGCTTGCGAATGAAGTGAAAGGCCTCTAGTACTCAAGTCTTTAGGAA
TTTCCCGCATACAGCCAAATTTAGCCATGACACTTTTGCACAGGCTAAAGCCCCTTTTTGTTTTT
ATAAAAAGCTGATATGAATTTATGAAATTGTAACAACTTCTCTCC
Found at i:131697 original size:17 final size:17
Alignment explanation
Indices: 131675--131710 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
131665 GTAATTGCCC
*
131675 TTTTTTGTCTGTTTTTT
1 TTTTTTGTCAGTTTTTT
*
131692 TTTTTTTTCAGTTTTTT
1 TTTTTTGTCAGTTTTTT
131709 TT
1 TT
131711 CCCTTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.06, G:0.08, T:0.83
Consensus pattern (17 bp):
TTTTTTGTCAGTTTTTT
Left flanking sequence: Indices 131175 -- 131674
TATTTCACAGCTTATATATCCAGCCTTTTCAATGGAAAAACCTCCATCCCAGCTAACCCATTTTT
AAATTGATCCTCATCATTCCTTGTTTCAATAGGAGATGCGCTGCGTGTAGTCTCTGAGGATCCTT
CACCTGTTTGTAAAGTCAAAATATTTGTTTCATTCATTTACATTTTTTTTTTTGAAGTTTCCTGC
TGATTGTGCATTGCCTATAGAACTGAAGATCTAATTCAGATCTATATATAAGCTTTTCACAGGTT
CGGGCGTAAAAAAAGAGATTTTTTCGCGCACTTATGAACCGAGTACTTAATGGCATTTAGCCTTT
CCAGCAAATAGCGGCATTATTCAATTTGGGATTGCTCTCAAATGCGGCCATCCTGTGGTTATTTT
TTGACCGAAGAACCAAAAAAGATGCTGGTATAAAATGGGATCCCCGCCACCAGCAGGATCAAAAA
AGGTTGTATTAAAGTTTCTATCAGTTAATAACATGGTAATTGCCC
Right flanking sequence: Indices 131711 -- 132210
CCCTTTTTTGTCTGACAGTCCTGGGGCCTTGTCGGACAGTATTTTGGTTTTATGGTGTCCGACAA
GACAAAGCCCGGGGCTCTGTCTGACAAAAAAAGTGCTTACACCGGAAACTAATATTTTTTTTCAT
GCCCGGCGTGGTTTTGGACTATATCTTCATCTCTTTCTATTCATACCTGCTTTGATGCGCACAAT
TTAAGCAAACTCCGCATTGGTCAGATGTGGTTTGTGTAAGATCATGTCATAGATGCATCGCCAGT
CACGCCAATCCGCGGCATTTGCCCGAGGAAAGGCATCAAAGTAAGCAACCACATGGGCATGCCTG
CCATGCTGCATGTGCGACTACGCCAATTTACTCTAGAAGCACTAACCTTGTAAAGTATAACTTGT
GCCCCAATTTGCTCAAGCGTCGGTCTAGTATCTATTTTCGTTTGTTTCTGCAGCTTACTCTATTC
TAGCTCAAACGAAATGGAAACGCGCCAATATCTACTGGATATGGT
Found at i:151172 original size:20 final size:20
Alignment explanation
Indices: 151135--151176 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
151125 AAGGGCCTTG
* **
151135 TCAGTTTTTTTCTTTTTTTT
1 TCAGTTTTTGTCAGTTTTTT
151155 TCAGTTTTTGTCAGTTTTTT
1 TCAGTTTTTGTCAGTTTTTT
151175 TC
1 TC
151177 CCTTTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.12, G:0.10, T:0.71
Consensus pattern (20 bp):
TCAGTTTTTGTCAGTTTTTT
Left flanking sequence: Indices 150635 -- 151134
TTCATTTTGGTCGTATATATATATATTTTTTTGATCAAGTGCGTTGTCCGGGCGTGGACCATGTC
TCCCGAAATTGATGAATCAGTACATATGGTCTAAGACGATTTCACATATCGAGGTCGAAATGGGA
TCGGGTGTTTTCACATCTTACCATAGTGCCCGGCTCTCAAAATTTTTCTTTTGATTTTTTCAAAT
AAATAATCTAATTTATTTTATTATTATATTATTTCTAAAATAATAATAAATTCTTTTTTTGCCGA
TTTTCATTAATTATATTAAAATGTATACTAATCTGTACAAAGATCAAAGGCCAAAGGCCCTGAGC
GTCTAGTGGAGGATATCATGGGACCACCAGACCACCCATAAGGCACTGTAAGCTTGCACTTTCAT
TTGCTACTGAAAAGCAAGCTACACTTGCTACTTGCACTTAAAAAGAACAAGTTTAAGGCATGCCA
GGGCGAACGCAGAAAGCAGAAAAAAAATAGAGAAAAAGGGCCTTG
Right flanking sequence: Indices 151177 -- 151676
CCTTTTTTTTTCTGACAGTCCCCCCTGGGGCCCGAGGGCCTTCGCCCCGAATCTTCAAGCTAGTC
AAACTATCGGCGCACTGTGCACGACGTCTTTGTAAGGTTGGATTCTCAAATGGCCCGATTGCCTT
AGGTTACTTGCCAAAGGGCACTCCGTGCCTTGTAATTGGTGAACTATTAAGATTGAAAAATGAAG
TACAGAGGTAGAAATTTCACGGTTATCGAAAACCCGAAATCAAAGTGCCAAGCTTCGCAAGGTTC
TGGCATCTAAAAGTTTCCAGTGTTTCTTCATGGTGAGTTAAGAATCGAAGGCGAAAAAAAAAATA
TATATATTTTTTTTTGATTTCAAAGCAATGAATCCTCTAAAATGATTTATAACTCATTTATAACC
GGACAGCTTTTGGAAGCTAATTTTCTACACTTTGTTAACAAAAGTACGTAGATATGGGGTATAGC
GGTCGTTTCTATACTTTGTTCACAAAGTATATAATGAAAACTCAA
Found at i:164544 original size:25 final size:25
Alignment explanation
Indices: 164497--164543 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
164487 AGGCCCCGCG
* *
164497 ACTGTCTGACAGGGCTCCTGGGGAA
1 ACTGTCAGACAGGGCCCCTGGGGAA
164522 ACTGTCAGACA-GGCCCCTGGGG
1 ACTGTCAGACAGGGCCCCTGGGG
164544 GCCCTGTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (25 bp):
ACTGTCAGACAGGGCCCCTGGGGAA
Left flanking sequence: Indices 163997 -- 164496
TATTCTCTGAACTTTCATTTCCATAATCATTGAATATTAGGTTTATTATTGTTTGCTTCAAGCTT
AAGAGCTGATTACGAAAAGGATGGATGTCTGAGCGGTTGAAAGAGTCGGTCTTGAAAACCGAAGT
ATTGAGAATACCGGGGGTTCGAATCCCTCTCCATCCGTGAGTATGTTAATGAGTTAACTGCATTC
TCTTCAATGCGTTTTCCCGAACCCTAGGGCTCTTTGGGCACTCGACCTATAAGGAGAGGGTCGAG
CCGCCTCTGGTGTTCGTGCGCGGAAATCGTGAAGCCATTTCTGGCCTTCGGCCCTTCGGACGGCC
CGAAGGATACTGCTTTGGCTTTCCGAAAAAAGGGCGCAGAAACTTTCCAGTAACTGCCCGCAGGC
ACGTAATGCGAAGACAAAAGGCCCCCGGACTTTTTTGTCTGACTGACAAAGCCCCGGACTTTGTT
GTGTCGGACACCACAAAACAAAATACTGTCCGACAAGGCCCCGCG
Right flanking sequence: Indices 164544 -- 165043
GCCCTGTCAGACAAAAAAAGGCCAAAAACCGATGCTTTCAAAAAAAACTGATTTACCTAAAATAG
TTTTTTTTCCTGCGGTACAAAAACTAATTGAACCAATTCCAACTTGTACGGATAGAGGGACTCGA
ACCCCCACGAACATTATGGTCACCAGAACCTAAACCTGGCATGTCTACCAATTCCATCATATCCG
CCAACCCTTGAAGTTATACAATCACTAGGCCTTAGATAAAGAAAAAATATAGAAAAAAAGGAAAG
CGAAGTGAAAAAAACTATTTTAGGCACGTAGTACTCGACCCGATAAGGGAGAGGGGTAGAAAAAT
CTATATTTTTTCCGCTACGCGCCTTCTTTCTCAGCCATTTCTAGAAGCGTCGGACCTACGGGCAG
AAAATGTCAAACAAAAAAATATTTTGTAGAGTGCCTCTCCGAACCCAGAAACTTTCCAGTATCTG
CCCGTAGGGCCCCAAAGGGGACTTTTTTTGTCTGACAAAAAAGGG
Found at i:167489 original size:18 final size:18
Alignment explanation
Indices: 167466--167509 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
167456 GAGGCGCGAA
167466 GACCAAAGAGAGACACTC
1 GACCAAAGAGAGACACTC
*
167484 GACCAAAGCGAGACACTC
1 GACCAAAGAGAGACACTC
167502 GACCAAAG
1 GACCAAAG
167510 GAAGAGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.30, G:0.23, T:0.05
Consensus pattern (18 bp):
GACCAAAGAGAGACACTC
Left flanking sequence: Indices 166966 -- 167465
AACAAAGCAATAGCTTCAGTTAAAGCAAAACCTAAAATGGCATAACCAAATAATTGCTTAGCCAA
TGATGGATTTCGCGCAACAGAATTAATCAAAGAATACCGATAGGGTTATTCCCCCCGGTCAGAAC
CACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCATGGCAATTTCTTCAGCTTTTGTGGCTTGGC
CGTATAAGCGCTACTAGCCCTCCTTACACCGGGACGCGCGACTACTGTGCAATTCCCCCCCCCCT
GCACCTTGTAACTAAGTCATTGTAGGCATAGCGTGATCCGCTTTCTTGATTTGGCTATGGTTGCC
CTAGCAAGAGCGCCGAGACCGGGATATCTTGAAAAGGTCTCAAGTGATACAGTTAAAGCTGCAAA
AAAAATTTTGAACTAGTCTAAATGGCGGATAAAGAAGGGTCCGCAGGCTGGAAATGGCTTTACGA
TTTCCACGCGCGAGTGCTAAAGGGAGAAGAGGGGAGAGGCGCGAA
Right flanking sequence: Indices 167510 -- 168009
GAAGAGAGCCTAAACATATTTTTTTTGCCGGAGGCGCGGGATAGAGCCTTTTGTTGTGAGTAGTC
TGTCCGCTCTATCCACGCCACTCCATCACAGGGTTCCTCGAATATAGTCACCTGACTCCATAATA
TGGTTCCTCGAGTATAGTAACCTGACTAAACCTAGTAGCGTGGAACTTTCCTGTAGTTTTTAGAG
AGGTGGGGTAGTATAGTGACGCTACCTCCTTGCCTTTTTCTGTGATTCGCAGGTTTGGACCAAAC
TTGAGTAAAGCAGCTTTGGCTGACCGTAGGCCGTGTTTTCTGGCCAAGGTTAGCGCGCAGGACTT
TTTATAGATGGACACAACTTTCCACAGGGAAGAGCGCTTGTTCACAAATGAATAGTAGTTAACAA
TGCCGCGTATCACCGATGAGAAGTGGATAACAATGTGTTTGTCCCCTGAGGAAACCAATCGTGGA
TTGGAGGTTGCTCGAGCTAAGCCCTTGGCGTTTTTTTTCGCGTAT
Found at i:171149 original size:21 final size:17
Alignment explanation
Indices: 171106--171142 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
171096 ATATTCAAAC
171106 ATTTTGATTGAACATAT
1 ATTTTGATTGAACATAT
171123 ATTTTGATTGAACATAT
1 ATTTTGATTGAACATAT
171140 ATT
1 ATT
171143 GCATTTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (17 bp):
ATTTTGATTGAACATAT
Left flanking sequence: Indices 170606 -- 171105
AATACAACCTCGCCGTCGGTCAACTCTTTTACTTTTTATTCCAAATCACAATAATAAATGACGTG
ACCGAAAGGATAACCAAGTAAGCCCGAGAGAACCCTCGGTCTTGCTATACTTATATGGAACCATC
GAAGAAGTTATACATACCATGAGTTGGGCTATTTGACTGGCTATATCTCGGAAATCCTTAGTATT
CGCAAGAGAAACCCAAAGGTATCGCCTACTTGTTCCGTGATGTTGTGAAAATCGATGTTTCCGCG
TAGAATAAGCGGTGGTGGGGCGAAGACTCCGGCCTAAAGGGTTCGGGTCGAGCACTACGTGCCTT
CAATCTACAAGCCCTCCCCGTTGGTCTTCGTCCCCCTCGGGGCCTTCTCCCGCTCCCCGCGCACT
CCGTGCCTATGGGTCCGAAGGAGACTTTCTTTGGCTTTACGAAAGAAGGACCTGAAGGGCGCGAG
ACTATAGGGAGAGGTTTCTTTTTCTTTTTTACGTAATATTCAAAC
Right flanking sequence: Indices 171143 -- 171642
GCATTTGGTAATGTTCGATATAATAAAAACTATGGAATCCCCGGGATTCCAAATCGACAACAGCT
TCAATAAAACGAAGTAGGTAGCAATGACCATCATATATAAAAAATGGAGCTCCTTCCACAAGGTT
AAACTAAGTAAAAGGGGATAAATGGCTATCAAATACCAATCGGTAGTTGAATATGTTGCTGTATT
CTACACATTTTCGAGGTGATATTAAAAAATGATGTCATAAAAACAGTCTGTTGGTAAAATTGAGT
CATATTAATGGTTGTGACAAAGTGTTTTTGGCTTACGCCAATCTTGTTGTTTTTCATATTTTTTT
TTATTTTGGTTCAAAAAGTATAAGAAATGGCTAAGTAACATAAGGGTAATGTATTGGATTGCAAA
TCCTATAAAGATGGTTCGAATCCGTCCTTAGCCTACTTTACGATTCTATTGTTCCTGGAAATAAC
CTATTATCTAATAAGTACAAAGATCTTGACCACCCTTTAGACTTA
Found at i:185897 original size:22 final size:21
Alignment explanation
Indices: 185870--185911 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
185860 GTATAGTCTA
185870 CGAAAAAATATATATTTTTTTG
1 CGAAAAAATATAT-TTTTTTTG
* *
185892 CGAAAATATATCTTTTTTTT
1 CGAAAAAATATATTTTTTTT
185912 ACATAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (21 bp):
CGAAAAAATATATTTTTTTTG
Left flanking sequence: Indices 185370 -- 185869
CCTCCTGCATAGGTAGCGTTTTGTTAGGCAGGGCTCAAGTACTAGCCTAGGATAGCAAGGGTCCC
AAAATTTTTTGGTGGCTGAGACCATACATAGTTGTACAAGGTACTATCCGCGTCTTACCATGAAC
TGCTCCGGGCGGTTAAATTGATAAATTTTATATAAGTGGATTGATTCACTACAGCAGAATTGGGG
GGCTGGCCACCACTGGGTTTCTCAGCGCCTTGTATCATTAATCTAGTCCCTAGGGGAGCCCGGCG
CTACGCGAACAAAAAAAAATATTTTTTTTGCTTTGCATGTTTTTAGCACTCCCTCGGCAGGGCCC
AAGGGGACTTTGTTTTGTCGGACACCACAATAGTAAAATACTGTCCGACAAAACAAAGGGCTAAA
GCCTTTCGGGCCGAAAGTCGACCCGATCGCAGCCTCTAAGCTCTCTGCCTTTTTTTTACAAGAAA
GTGCAATCCTCCGCAATTTCACAAAAAACTTTAGAGTATAGTCTA
Right flanking sequence: Indices 185912 -- 186196
ACATAAATATTCAAGCTAACGGAGGAGGGCCGCAGGCAAAATAAAATATATATTTTATGACAAAA
TAAAAATATTTTAGTTTTTCGGCGAATAACGGGATTCGAACCCGTGTTTTCAGAGCCACAATCTG
CAACTTTAACCCCTAAGTTATATCCGCCCTTATTTATAAATAAGATACTCGCTATCGGATTCGAA
CCGATATTCCATTAGAAACAGATTTTGAGTCTGCCGTGTTTGCCGTTCCACCAAGCGAGTCTTGG
CTTTTATTAGGAATAGATTGAAAAT
Done.