Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_030900
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 372339
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 2 of 4
Found at i:117529 original size:36 final size:39
Alignment explanation
Indices: 117475--117585 Score: 147
Period size: 36 Copynumber: 2.8 Consensus size: 39
117465 CCCAAGGGCC
117475 CTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGG
1 CTCCGATAGGA--GCAACTCCGACCGATAGGGAGGAGTTGG
117516 -TCCGA-AGGA-CAACTCCGACCGATAGGGAGGAGTTGG
1 CTCCGATAGGAGCAACTCCGACCGATAGGGAGGAGTTGG
117552 CCCTCCGATAGGAGGGCAACTCCGACCGATAGGG
1 --CTCCGATAGGA--GCAACTCCGACCGATAGGG
117586 TCCGAACGAA
Statistics
Matches: 63, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
36 27 0.43
39 9 0.14
40 9 0.14
43 18 0.29
ACGTcount: A:0.25, C:0.25, G:0.36, T:0.14
Consensus pattern (39 bp):
CTCCGATAGGAGCAACTCCGACCGATAGGGAGGAGTTGG
Left flanking sequence: Indices 116975 -- 117474
AAGCGTGAGACCATAGCATGTTACAAAAGCGCGGTTGGGGGTTAAGAAATGAAGAGCACCGCGCG
AACTCTATAGTGTCACACGAGATAAGCCCTTAGCCTGGCGAATCGAAGTTCTATTCTTTCTGGTT
AACTGGCCACTTGGTTAACAACCCATGCTACAAGCACGGTGGGAACGCGCGAACGCACGCTGGTG
TGCTTCCTGCCTGTCGAGGTTAAACAGCGACAAGGTTCAGATTGGAGGAGCTGGAAACAGCTGCA
TGGGAGCCGCCCAACTCTTTGGGTACAATTAACGGAACGATATCTTGATACACCAAAACCATAGG
CTTATCGGCGAGATCCAACGGTGGACTGGATCCCCTATGGAAGTCATAGGACCTTTAGTACCCAC
CCAGCGCTTCGCGCCACTCCGGCCTTTATTCCAATATTGTCCCACGAGTTTTAATGGCTCGAAGG
CTCGAAAAAAAACCGAAGGGCCCTTTAAAAGTGCCCCCAAGGGCC
Right flanking sequence: Indices 117586 -- 118085
TCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGT
CCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCTC
CGACAGGAGGACAACTCCGAATTCCGATAGGGAGGAGTGGGTCCGATAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
GGAGGAGTGGGGGGAGTTGGCCAGGGGAGCGCATAGCGCTCCCCTGGCCGGGCCCTGTGCCTTTA
AACGCCCCGGCACCACCACCCATAAATGGGTGGTTAGGGGAGTGCCGGCAGGCCAACTCCTTTAA
ACCCCACACCACCCATGAAGTGGTGGGGTTTAAAGGAGTTGGGGTTTCCGTTAGGAAACCCCCCC
TGCCCCACCACCATCGGGTGGGGCGCGGTGCCTGCCCCTCCATAA
Found at i:120226 original size:34 final size:34
Alignment explanation
Indices: 120188--120277 Score: 171
Period size: 34 Copynumber: 2.6 Consensus size: 34
120178 TCCCACTCCT
120188 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
120222 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
*
120256 CCCTTCGGTCGGAGTTGTCCTC
1 CCCTTCGGTCGGAGTGGTCCTC
120278 CGGACCCTGG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.08, C:0.33, G:0.29, T:0.30
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 119688 -- 120187
AGGGAAGCGAGGCGCCGAGAAATGGCGCGAAGCGCCCGCCGCAGGGCTAGGTGGTTCGAAGGGGC
TAGCTTTCCACAAAGGTCTTAGCTTCCCCCGCCTAATAACGGCAGGGTAGCGCTACGCGCTACCC
GCGGGGGGTGCGGAGCACCCCCCTGCCCGCCGCGCCCCCCCATAGCTCATGAAAGGGCTACGTAG
CGATGGATGGCAGAGGGTCCGTAGTACCCGCCTACCCGAAAGGGACCAGGTGAAGCACTGGAGTA
GTGATCCAGTAGCCGGGAAGGGGCCTGAGTAAAAGCCTTGATAGGCGGCTATACTCTACACATTC
ACAAAGCTCAAACCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGT
CGGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGGCGCTACCGGCAGGTTTTCGCGCG
TAGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 120278 -- 120777
CGGACCCTGGCAGGGTCCTCCGACAGGAGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGTCCG
ATAGGACAACTCCGAATTCCGATAGGGAGGAGTTGGCCAGGGCAGCGCTACGCGCTGCCCGCCGG
GGGCGCGTAGCGCCCCCTGCCCCTGACCCAGGTTCCATGACACCAAGACCAGACGGTTATACCAT
CGAAGGTGGTACGTCGCTAGAACAGCTGAAAAGTATGCAAGGCAGAACCGGTTTTGGTGGGGGAC
TAACGCGTTTCCCCCCGTGGTGGTCCAGTGGGGAGGGGGATCTCAGTGGGGGTGGAGCCGGGATT
TAAATTAATTTAATTTACAAAACCGGTAAGAGGAAGAAGCAAGAGGGCAGGTAGCTTCGCGCCCC
CTTCATGAATCCATGCCACCTTTAGGTTCACCCCCCGGAAAACGCGCGAAGCGCGAGTAGTATGC
GCGGCCACCCTGCTGCGCCCCTTCTCTCTCAAAAGGGGAAGCGCG
Found at i:124167 original size:9 final size:9
Alignment explanation
Indices: 124153--124181 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
124143 GAATCATGCC
124153 CCAACTCCT
1 CCAACTCCT
124162 CCAACTCCT
1 CCAACTCCT
124171 CCAACTCCT
1 CCAACTCCT
124180 CC
1 CC
124182 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 123653 -- 124152
CGACCTTTCCGAGAGACTCTTGTTGACTGTAGGCCGGCTACATCGACTCTTTCGAGAGCTAGCTA
GTTAGTGTTTTCTAACGAAAGCGCCTACGTACTACATCGACTTCTCTGATATTTCAGCCTAGGGT
TCTCACCCACTCCTAGCCCACATTAGTGCCGAAGGCCTTCAGGCACGTACTTTGCATTTATGCTA
GCTCCTTTTTCCCCTTCTTTTTGAGGAAGCCAGCCCTGAGGAAATTCAAAGGTCGTCTCTCCGGA
AAGCTTTTTACTGGAGGCCAGCTGTATGCGAGTAGCTGAGATTTTACTGAATGGGAGTGCCCGCT
TTCAGTCGAGTGTCTTAGGCTTAAATGGGCCACCACTCGCCCTTTAGGGGAGTGGGACGCAGCCA
GAATCATCCTCTCCTTTCAGTCGAGTGTCTGGCTGGTGGTGGGTGGTGGACCCGGGGAGGGCACT
AGAGGTTGACCGGCAGCGCGTAGCGAAAAAGTCGAGAATCATGCC
Right flanking sequence: Indices 124182 -- 124681
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGAATTCGGAGTTGTCCTCGCCTCGGAC
CCTTCGGTCCCTTCGGGCCAACTCCTCCCTAGGAATTCGGAGTTGCCCTCCTGCCGGAGGGCGGG
CCCTTTAAAGTGGCACTTTAATTTCATTGAAATTAGATTAAAGTAACGCTTTAAAAGGGGTCCGA
ACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCC
GTCGCGAAAACCTGAGTAATTTGATTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGA
GTGGTCCTATCGGACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGG
GGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCT
Found at i:124867 original size:35 final size:35
Alignment explanation
Indices: 124823--124891 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
124813 GCGGTTAATC
124823 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
124858 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
124892 CAGCGGCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 124323 -- 124822
TTCGGGCCAACTCCTCCCTAGGAATTCGGAGTTGCCCTCCTGCCGGAGGGCGGGCCCTTTAAAGT
GGCACTTTAATTTCATTGAAATTAGATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGG
ACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAAC
CTGAGTAATTTGATTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATC
GGACCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTGGCCGG
CCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTTAATTTTCAATGAAATTAAAG
TAAAGTAACTTTGAAATAATTTGAAATGAAATGAAACTAAAGTACTTTTAAAGCGCTCCGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 124892 -- 125391
CAGCGGCCTTTTAAAAGTCGCTGCTAAAGGGCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGT
CCTCACTTCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGGTTCGGGGTCCGAACCCGT
ACTTTAATTTAATTTAATTTAAACGTACGTTTTTAGCCTTAAATTGAATTGAAACTAAATTAAAG
GTTCTTTAAAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTT
GGTCCGAGGCGAGGACAACTCCGACCGCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGG
AGGAGTTGGGGGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCTGACCTACC
GGGAGGAGTTGGGGGAGTTGGTCCCCCCTTCTCTCTCTCCCGAAC
Found at i:125250 original size:29 final size:31
Alignment explanation
Indices: 125217--125276 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 31
125207 GGGGGGAGTT
125217 GGTCCGA-G-GCGAGGACAACTCCGACCGCG
1 GGTCCGACGAGCGAGGACAACTCCGACCGCG
125246 GGTCCGAGCGAAGCGAGGACAACTCCGACCG
1 GGTCCGA-CG-AGCGAGGACAACTCCGACCG
125277 AAGGGAGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 7 0.26
31 1 0.04
33 19 0.70
ACGTcount: A:0.23, C:0.33, G:0.37, T:0.07
Consensus pattern (31 bp):
GGTCCGACGAGCGAGGACAACTCCGACCGCG
Left flanking sequence: Indices 124717 -- 125216
GTAACTTTGAAATAATTTGAAATGAAATGAAACTAAAGTACTTTTAAAGCGCTCCGACTTTAAAG
CGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATT
AAAGTAACCTAATTAATTTTCAAGGAAATTAAATTAAAGTAACCTCAGCGGCCTTTTAAAAGTCG
CTGCTAAAGGGCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCT
TAAATTGAATTGAAACTAAATTAAAGGTTCGGGGTCCGAACCCGTACTTTAATTTAATTTAATTT
AAACGTACGTTTTTAGCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAA
CGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTT
Right flanking sequence: Indices 125277 -- 125776
AAGGGAGGAGTTGGGGGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCTGAC
CTACCGGGAGGAGTTGGGGGAGTTGGTCCCCCCTTCTCTCTCTCCCGAACCCTCTCTCTTATCCC
CCCTCCCCCCCTCACCTTGCCCCACCTGCGTAGGACTCCTTAGGTAAGCAAATCTCTTCAATTTA
GTAAATAGAATGAGATTCTTTCGATGGGATCGAAAAACCTCTCGCCCAAGGTGCTTCTACGGAAG
CCGGTCACCGATTGGCTAAGAACCTATCGCTCAGAATTTGCTCATTTTTCCGGGGAGGGTGTCCT
TTGGGACACCTCGATAACTCAAGGGTCAGGGAAGCGCTACGCGCTTCCCTAGGGCGGCCGCCCTG
TCCGGACGAAGTGAGGACAACTCCCCGGGGAGTTGGGGGAAGCTTTTTATTATTATTATTATTAT
TATTCCGAATACATACCCTTCTGGATTGACCCGCGTCCCTTCATT
Found at i:128405 original size:30 final size:30
Alignment explanation
Indices: 128370--128451 Score: 155
Period size: 30 Copynumber: 2.7 Consensus size: 30
128360 GGAGAGGGAT
128370 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
1 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
128400 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
1 GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
*
128430 GAAAGGAAACCCTCTCTCCCCT
1 GAAAGGAAACCCTCTCTTCCCT
128452 CTCTTCCTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.20
Consensus pattern (30 bp):
GAAAGGAAACCCTCTCTTCCCTAGCTGAGG
Left flanking sequence: Indices 127870 -- 128369
GAATGGATCTTGATAAAGTCACTCAATTTGCTGCCAGCGTCAAAAGTTGTAAACCCCCCGAAGTT
TATAAAGGGAGAGGTATACGGTATCAGAACGAAGTTATACAAAAGAAACCGGGAAAGAAGAAGCA
AATCATGTCATATATTCTAGGAACCAGATCGGTTTCCGGTAAACAAGTCAGAATTGCCTCGGTTT
CAATCTCTGGGACTGGACCCAAAAGAGCCGTTAAGGTTTGTGATCAATTGGGTATCAGTGATAGC
ATTAAGGTTCATGAGTTGACTAAGCATGAAATTGACAAAGTTCTCGGAATAATACGTAGAAAGCA
TTTTTTGGTTGATTCAGAATTGAAAAGAGAGATCAAGCCAAATACTAAACGATTGATTAGTATTA
GTTGTTACCGCGGATTCCGTCACAAAGCGGGATTGCCGTTACGCGGTCAACGAACTCATACTAAT
GCTAAAACTTGTCGCGTCGCGACTTTTAAAAGGGCGGAGAGGGAT
Right flanking sequence: Indices 128452 -- 128951
CTCTTCCTCCCCGCCTCTCATTTCGTTATGCGTTATGAGTTTGAATCAAAGAAGAAGCCCTTAAA
GGTCCAGCCAATTAAAAGTCTGAATTCAACTAATTTTCATAGTTGAACTTTGACTTTTAAGTCGA
AAATTAATTGACTTTAGACTTTAACGAGTTGGAGGACTTTTAAAAGCCCGATTTCCTATTCTGTT
ACAGTCCCCATAGGGTCCGAAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCTCTAACCAGAAAACTCGAACATACGG
GTAGGGGCAGGTGGTGCGGCAGGCACCCCCTGGGTTAGCTAGGGGGCTACCCTGGCCCGGGAAGG
GAGTGGGGGGGCTTTAAAGCGAGAGAGAGGAGAGTGGGAAGGCCC
Found at i:129891 original size:34 final size:34
Alignment explanation
Indices: 129850--129914 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
129840 GCTTTAAAAG
129850 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
129884 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACC
129915 TACCGGGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.32, T:0.09
Consensus pattern (34 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Left flanking sequence: Indices 129350 -- 129849
AAGCCCTTGCAGCAGGTGGACGGCGAACTCAACTGCGATCTGTCACCTATAGGGCAGGGGGGCGA
GCTTGCGAGCCCCTTTAAAGGTCAGCCTTAGGGCTGCCCTGCCCAGCGCACCGTAAGGCCCCGGC
AGCCAGGTCATGGACCAGTACCACATTTTTCTTAGCGGGGGGAGGGAAAGAGTCGGCAAATCGTC
TGCTGTTTTTGTGTGGTGCGGCTCGCCCGTCTGTTTCTGTAGAAAGAAATATTCCAAACTACTTT
GACCCACGTAGGCGAAGCACTCTAAGTGCGCGTAGCGGCAGGCTTCGCCTTCGGCCTGCTGCTCC
TGGCTCTGCTTCCAGCTCACCCTTTTCCCAGTTCGCGAAAGACTAAGGTAGCCCGGCCAATCAAG
AATAGATAGGGCGGGGATGAGCGCTTTAAAAGGATCAATCTTTTTTGTCTAGGGTCCGAGCGACG
CGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAG
Right flanking sequence: Indices 129915 -- 130414
TACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCTATTCTTCTCGGGTGCCTCCGATTCTTTCC
CTTCTCGATCTAAAGCCTCTAGGCCCACACCTCCACATTCAGGTAATAGCCATTTCCTTCTCCCA
ACTTTCGGGGGCTTGACGCGGAGCAGGGTACGATAAAGCCCCGCCTACCTGGGGCTAGCCGTTCC
TTCGTGCGATTCCATTATTTCCTTACCCGAGGAATTGAATTGAATTGAATTTAATCGCACCTTTT
AATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGCCGCCTTTCAGTGGCCAAGAGACC
ACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGTTGATAGAGCCGCGGTATTAGTGC
CAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAGCTTGCCAGCCAAAGCGGCTAGTA
AGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATTTCT
Found at i:130333 original size:26 final size:26
Alignment explanation
Indices: 130301--130381 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
130291 CGCGGTATTA
*
130301 GTGCCAGCCAAAGCGGCCAGTAAGTG
1 GTGCCAGCCAAAGCGGCTAGTAAGTG
130327 GTGCCAGCCAAA---GCTAGT-AGCT-
1 GTGCCAGCCAAAGCGGCTAGTAAG-TG
130349 -TGCCAGCCAAAGCGGCTAGTAAGTG
1 GTGCCAGCCAAAGCGGCTAGTAAGTG
*
130374 ATGCCAGC
1 GTGCCAGC
130382 ACTTAAGGGC
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
21 11 0.23
22 2 0.04
23 6 0.13
24 7 0.15
25 2 0.04
26 19 0.40
ACGTcount: A:0.27, C:0.27, G:0.31, T:0.15
Consensus pattern (26 bp):
GTGCCAGCCAAAGCGGCTAGTAAGTG
Left flanking sequence: Indices 129801 -- 130300
GACGCGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTG
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGG
AGGAGTGGGGGGAGTTGGCTATTCTTCTCGGGTGCCTCCGATTCTTTCCCTTCTCGATCTAAAGC
CTCTAGGCCCACACCTCCACATTCAGGTAATAGCCATTTCCTTCTCCCAACTTTCGGGGGCTTGA
CGCGGAGCAGGGTACGATAAAGCCCCGCCTACCTGGGGCTAGCCGTTCCTTCGTGCGATTCCATT
ATTTCCTTACCCGAGGAATTGAATTGAATTGAATTTAATCGCACCTTTTAATTAAAGCGCTCCGA
ACTTTTGGAGAAAGCCATTGAGTTGCCGCCTTTCAGTGGCCAAGAGACCACTTCCTGTTCTGTTT
GCGAGAGCCAAAGAGTGGCCATTTGTTGATAGAGCCGCGGTATTA
Right flanking sequence: Indices 130382 -- 130881
ACTTAAGGGCCCAACGTACTATCTACCATTTCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCG
CTACGCGCTTCCACTTGTGAAGTTCACCCCACCACCAACCAACAGAAGCGAAAGCCCTTGCGCAC
TGGGTTTCTTGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAA
GTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGG
TCCTACGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATC
GGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGT
TGGAGGAGTTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAA
Found at i:130604 original size:69 final size:70
Alignment explanation
Indices: 130522--130664 Score: 261
Period size: 69 Copynumber: 2.1 Consensus size: 70
130512 TGGGTTTCTT
130522 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACC
130586 ACTCC
66 ACTCC
* *
130591 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACC
130656 ACTCC
66 ACTCC
130661 GACC
1 GACC
130665 GAAGGGAGGA
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 40 0.56
70 31 0.44
ACGTcount: A:0.27, C:0.34, G:0.29, T:0.10
Consensus pattern (70 bp):
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGACAGGGTCCGAACGAAGTGAGGACC
ACTCC
Left flanking sequence: Indices 130022 -- 130521
GTAATAGCCATTTCCTTCTCCCAACTTTCGGGGGCTTGACGCGGAGCAGGGTACGATAAAGCCCC
GCCTACCTGGGGCTAGCCGTTCCTTCGTGCGATTCCATTATTTCCTTACCCGAGGAATTGAATTG
AATTGAATTTAATCGCACCTTTTAATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGC
CGCCTTTCAGTGGCCAAGAGACCACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGT
TGATAGAGCCGCGGTATTAGTGCCAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAG
CTTGCCAGCCAAAGCGGCTAGTAAGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATT
TCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCGCTACGCGCTTCCACTTGTGAAGTTCACCCC
ACCACCAACCAACAGAAGCGAAAGCCCTTGCGCACTGGGTTTCTT
Right flanking sequence: Indices 130665 -- 131164
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAG
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAG
AGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGGTGAACCACTCCCTAG
CTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCCACCCCACCTGAG
GAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTCTACCTTCGTTAA
ACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGAACCTCCCATTGC
ATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCT
Found at i:130610 original size:35 final size:35
Alignment explanation
Indices: 130522--130664 Score: 261
Period size: 35 Copynumber: 4.1 Consensus size: 35
130512 TGGGTTTCTT
130522 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
* *
130557 GACCGA-AGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
130591 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
130626 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
1 GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
130661 GACC
1 GACC
130665 GAAGGGAGGA
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
34 32 0.31
35 71 0.69
ACGTcount: A:0.27, C:0.34, G:0.29, T:0.10
Consensus pattern (35 bp):
GACCTACCGGGTCCGAACGAAGTGAGGACCACTCC
Left flanking sequence: Indices 130022 -- 130521
GTAATAGCCATTTCCTTCTCCCAACTTTCGGGGGCTTGACGCGGAGCAGGGTACGATAAAGCCCC
GCCTACCTGGGGCTAGCCGTTCCTTCGTGCGATTCCATTATTTCCTTACCCGAGGAATTGAATTG
AATTGAATTTAATCGCACCTTTTAATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGC
CGCCTTTCAGTGGCCAAGAGACCACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGT
TGATAGAGCCGCGGTATTAGTGCCAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAG
CTTGCCAGCCAAAGCGGCTAGTAAGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATT
TCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCGCTACGCGCTTCCACTTGTGAAGTTCACCCC
ACCACCAACCAACAGAAGCGAAAGCCCTTGCGCACTGGGTTTCTT
Right flanking sequence: Indices 130665 -- 131164
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAG
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAG
AGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGGTGAACCACTCCCTAG
CTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCCACCCCACCTGAG
GAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTCTACCTTCGTTAA
ACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGAACCTCCCATTGC
ATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCT
Found at i:130706 original size:9 final size:9
Alignment explanation
Indices: 130668--130703 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
130658 TCCGACCGAA
130668 GGGAGGAGT
1 GGGAGGAGT
130677 GGGAGGAGT
1 GGGAGGAGT
130686 GGGAGGAGT
1 GGGAGGAGT
*
130695 TGGAGGAGT
1 GGGAGGAGT
130704 TGGTCCTACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.64, T:0.14
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 130168 -- 130667
ACCTTTTAATTAAAGCGCTCCGAACTTTTGGAGAAAGCCATTGAGTTGCCGCCTTTCAGTGGCCA
AGAGACCACTTCCTGTTCTGTTTGCGAGAGCCAAAGAGTGGCCATTTGTTGATAGAGCCGCGGTA
TTAGTGCCAGCCAAAGCGGCCAGTAAGTGGTGCCAGCCAAAGCTAGTAGCTTGCCAGCCAAAGCG
GCTAGTAAGTGATGCCAGCACTTAAGGGCCCAACGTACTATCTACCATTTCTTCTCTGACGCCGA
TCGAAATGTTTTCTTTGCGCTACGCGCTTCCACTTGTGAAGTTCACCCCACCACCAACCAACAGA
AGCGAAAGCCCTTGCGCACTGGGTTTCTTGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 130704 -- 131203
TGGTCCTACGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCT
ATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGG
AGTTGGAGGAGTTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGT
CTCTGACCTGGTGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATT
GAATCCACTCCGCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGG
CTCGGAAGCTCCTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTT
CTTGTGGCTAGTGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCC
ACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCG
Found at i:130841 original size:9 final size:9
Alignment explanation
Indices: 130829--130859 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
130819 CCGACCGAAG
130829 GGAGGAGTT
1 GGAGGAGTT
130838 GGAGGAGTT
1 GGAGGAGTT
130847 GGAGGAGTT
1 GGAGGAGTT
130856 GGAG
1 GGAG
130860 AGGAAACTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.58, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 130329 -- 130828
GCCAGCCAAAGCTAGTAGCTTGCCAGCCAAAGCGGCTAGTAAGTGATGCCAGCACTTAAGGGCCC
AACGTACTATCTACCATTTCTTCTCTGACGCCGATCGAAATGTTTTCTTTGCGCTACGCGCTTCC
ACTTGTGAAGTTCACCCCACCACCAACCAACAGAAGCGAAAGCCCTTGCGCACTGGGTTTCTTGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAA
CTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 130860 -- 131359
AGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGGTGAACCACTCCCTAG
CTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCCACCCCACCTGAG
GAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTCTACCTTCGTTAA
ACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGAACCTCCCATTGC
ATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCC
CACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTG
ACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCG
AGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGG
Found at i:131173 original size:18 final size:18
Alignment explanation
Indices: 131150--131190 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
131140 AGAAAGGCCA
131150 ACTCCCCCCACTCCTCCC
1 ACTCCCCCCACTCCTCCC
131168 ACTCCCCCCACTCCTCCC
1 ACTCCCCCCACTCCTCCC
131186 ACTCC
1 ACTCC
131191 TCCCGGTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.71, G:0.00, T:0.17
Consensus pattern (18 bp):
ACTCCCCCCACTCCTCCC
Left flanking sequence: Indices 130650 -- 131149
AGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGG
ACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGT
GCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGG
TGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCC
GCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTC
CTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAG
TGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCA
Right flanking sequence: Indices 131191 -- 131690
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTGACCTGG
CAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCGAGTGTC
TAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAGAG
AGTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAGAGACCCGGGAA
GGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTC
CTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAA
GAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCT
AGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTT
Found at i:131191 original size:9 final size:9
Alignment explanation
Indices: 131150--131194 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
131140 AGAAAGGCCA
*
131150 ACTCCCCCC
1 ACTCCTCCC
131159 ACTCCTCCC
1 ACTCCTCCC
*
131168 ACTCCCCCC
1 ACTCCTCCC
131177 ACTCCTCCC
1 ACTCCTCCC
131186 ACTCCTCCC
1 ACTCCTCCC
131195 GGTAGGTCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.11, C:0.71, G:0.00, T:0.18
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 130650 -- 131149
AGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGG
ACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGT
GCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGTCTCTGACCTGG
TGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCC
GCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTC
CTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAG
TGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCA
Right flanking sequence: Indices 131195 -- 131694
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTGACCTGGCAGT
GCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCGAGTGTCTAAA
GACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAGAGAGTT
TCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAGAGACCCGGGAAGGAA
GGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTCCTTT
CCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAAGAGA
GGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCTAGGG
AAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCC
Found at i:131401 original size:53 final size:47
Alignment explanation
Indices: 131334--131430 Score: 131
Period size: 48 Copynumber: 1.9 Consensus size: 47
131324 AGACCCTCCG
131334 GTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAGAGA
1 GTTTCCTTTACCTCAGCT----A-GGGAAGAAAGGGAAGGG-AAGGGAAGAGA
*
131387 GTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAG
1 GTTTCCTTTACCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAG
131431 GAAGGGAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
47 8 0.19
48 17 0.40
49 1 0.02
53 17 0.40
ACGTcount: A:0.32, C:0.13, G:0.38, T:0.16
Consensus pattern (47 bp):
GTTTCCTTTACCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGAGA
Left flanking sequence: Indices 130834 -- 131333
AGTTGGAGGAGTTGGAGGAGTTGGAGAGGAAACTCGTCAGAAATTTAAAAATTTCAATTCCTTGT
CTCTGACCTGGTGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATT
GAATCCACTCCGCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGG
CTCGGAAGCTCCTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTT
CTTGTGGCTAGTGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCC
ACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTATCGGTCGGAGTGGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGC
CCTCCTATCGGAGGGCCCTTCGGTCGAGTGTCTAAAGACCCTCCG
Right flanking sequence: Indices 131431 -- 131930
GAAGGGAAGAGACCCGGGAAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGC
TAGGGAAGAGAGTTTCCTTCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCC
CTTTTCCTTTCCCTAGGGAAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGA
AGGTTTCCTTTCCCTTAGCTAGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTT
TCCCTGCCGCTAAAGGTTTCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCT
TTCTGATTAGCATGCTTTCTGATTAGCATACTTTCTGATTAGTGTATGGGGTATTGAGAGAAGGG
AAGAGGTTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGG
GTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCAGTC
Found at i:131435 original size:4 final size:5
Alignment explanation
Indices: 131413--131463 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
131403 CTAGGGAAGA
* *
131413 AAGGG AAGGG AAGGG AA-GG AAGGG AAGAG ACCCGGG AA-GG AAGGG AAGGG
1 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG A--AGGG AAGGG AAGGG AAGGG
131463 A
1 A
131464 GTTTCCCTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 8 0.21
5 27 0.71
7 3 0.08
ACGTcount: A:0.41, C:0.06, G:0.53, T:0.00
Consensus pattern (5 bp):
AAGGG
Left flanking sequence: Indices 130913 -- 131412
ACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCCACTCCGCC
ACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGAAGCTCCTC
TACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTGGCTAGTGA
ACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCTCCCACTCC
CCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTGGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGG
GCCCTTCGGTCGAGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAG
GGAAGGGAAAGGGAAGAGAGTTTCCTTTCCCTCAGCTAGGGAAGA
Right flanking sequence: Indices 131464 -- 131963
GTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTCCTTTCCCGGGAAA
GAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAAGAGAGGGAATTTC
CTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCTAGGGAAGAGAGGG
TTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCCTGCCGCTAAAGGTTTCCTTTCCCTCAGCT
AGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGATTAGCATGCTTTCTGATTAGCATACTT
TCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGATTG
GTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCG
ATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTCCC
Found at i:131458 original size:9 final size:9
Alignment explanation
Indices: 131405--131461 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
131395 TCCCTCAGCT
*
131405 AGGGAAGAA
1 AGGGAAGGA
131414 AGGGAAGGGA
1 AGGGAA-GGA
131424 AGGGAAGGA
1 AGGGAAGGA
131433 AGGGAAGAGA
1 AGGGAAG-GA
*
131443 CCCGGGAAGGA
1 --AGGGAAGGA
131454 AGGGAAGG
1 AGGGAAGG
131462 GAGTTTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 23 0.56
10 10 0.24
11 2 0.05
12 6 0.15
ACGTcount: A:0.42, C:0.05, G:0.53, T:0.00
Consensus pattern (9 bp):
AGGGAAGGA
Left flanking sequence: Indices 130905 -- 131404
CCTGGTGAACCACTCCCTAGCTCGAAGGCTCATCAGCACCATATTCTACTCAATGGATTGAATCC
ACTCCGCCACCCCACCTGAGGAACCAAACCAACTAACATTTTATCAAAACCTTTCCAGGCTCGGA
AGCTCCTCTACCTTCGTTAAACTGGTAGGTCACTGGGGTCGAAGGCGCCGTTAGGCCTTCTTGTG
GCTAGTGAACCTCCCATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCT
CCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTGGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCT
ATCGGAGGGCCCTTCGGTCGAGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGG
GAAGAAAGGGAAGGGAAAGGGAAGAGAGTTTCCTTTCCCTCAGCT
Right flanking sequence: Indices 131462 -- 131961
GAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCTTCCTTTCCCGGGA
AAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGGAAGAGAGGGAATT
TCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAGCTAGGGAAGAGAG
GGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCCTGCCGCTAAAGGTTTCCTTTCCCTCAG
CTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGATTAGCATGCTTTCTGATTAGCATAC
TTTCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGAT
TGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGC
CGATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTC
Found at i:131652 original size:30 final size:26
Alignment explanation
Indices: 131615--131696 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 26
131605 CTAGGGAAGA
131615 GAGGGAAGGGAAGGTTTCCTTTCCCTT
1 GAGGGAAGGGAAGGTTTCCTTTCCC-T
* *
131642 AGCTAGGGAAGAGAGGGTTTCCTTTCCC-
1 -G--AGGGAAGGGAAGGTTTCCTTTCCCT
*
131670 GAGGGAAGGGGAGGTTTCCTTTCCCT
1 GAGGGAAGGGAAGGTTTCCTTTCCCT
131696 G
1 G
131697 CCGCTAAAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
25 21 0.46
26 1 0.02
27 1 0.02
28 1 0.02
30 22 0.48
ACGTcount: A:0.18, C:0.20, G:0.35, T:0.27
Consensus pattern (26 bp):
GAGGGAAGGGAAGGTTTCCTTTCCCT
Left flanking sequence: Indices 131115 -- 131614
ATTGCATTCCTACCTCGGGTAGGCTAGAAAGGCCAACTCCCCCCACTCCTCCCACTCCCCCCACT
CCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGG
TCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTC
GGTCGAGTGTCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGG
AAAGGGAAGAGAGTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAG
AGACCCGGGAAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGA
GAGTTTCCTTCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTT
TCCCTAGGGAAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGA
Right flanking sequence: Indices 131697 -- 132196
CCGCTAAAGGTTTCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGA
TTAGCATGCTTTCTGATTAGCATACTTTCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGG
TTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAA
GAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTAC
CTCTCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCCCCCAGTCGAGTGGGAAGCCAGTCC
CTCTACCCTCCCTAGTCGAGTGGGAATAGAACCAGTCCTTCCACCTCCCCCAAATCCCAGGCTTT
CGCTTTAGCTTCGGCAGAGAAGGGAAAAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCC
CTCCACCCCTCCATCAGATGGAGTCGATCGGGGTGGGGACAGAGC
Found at i:131775 original size:16 final size:16
Alignment explanation
Indices: 131754--131797 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
131744 TGGGCTCTAC
*
131754 CTTTCTGATTAGCATG
1 CTTTCTGATTAGCATA
131770 CTTTCTGATTAGCATA
1 CTTTCTGATTAGCATA
131786 CTTTCTGATTAG
1 CTTTCTGATTAG
131798 TGTATGGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (16 bp):
CTTTCTGATTAGCATA
Left flanking sequence: Indices 131254 -- 131753
GGCAGTGCCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTTCGGTCGAGTG
TCTAAAGACCCTCCGGTTTCCTTTACCTCAGCTAGGGAGGGGAAGAAAGGGAAGGGAAAGGGAAG
AGAGTTTCCTTTCCCTCAGCTAGGGAAGAAAGGGAAGGGAAGGGAAGGAAGGGAAGAGACCCGGG
AAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCCCTGCCGCTAGGGAAGAGAGTTTCCT
TCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTTCCTTTCCCTTTTCCTTTCCCTAGGG
AAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGGGAAGGGAAGGTTTCCTTTCCCTTAG
CTAGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGGTTTCCTTTCCCTGCCGCTAAAGGTT
TCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTAC
Right flanking sequence: Indices 131798 -- 132297
TGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGG
GTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCA
GTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTA
CCTCCCCCAGTCGAGTGGGAAGCCAGTCCCTCTACCCTCCCTAGTCGAGTGGGAATAGAACCAGT
CCTTCCACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGAAGGGAAAAGGTGGCTT
GGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATGGAGTCGATCGGGGTGG
GGACAGAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTGGATAAGGCCGTACCGGAGAATG
GGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGG
Found at i:131971 original size:37 final size:37
Alignment explanation
Indices: 131924--132047 Score: 202
Period size: 37 Copynumber: 3.4 Consensus size: 37
131914 GGCCGATCTC
131924 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
1 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
*
131961 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCC
1 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
131998 CCCAGTCGAGTGGGAAGCCAGT--C-CCTCTACC-CT
1 CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
132031 CCCTAGTCGAGTGGGAA
1 CCC-AGTCGAGTGGGAA
132048 TAGAACCAGT
Statistics
Matches: 84, Mismatches: 2, Indels: 5
0.92 0.02 0.05
Matches are distributed among these distances:
33 4 0.05
34 21 0.25
35 1 0.01
37 58 0.69
ACGTcount: A:0.18, C:0.39, G:0.24, T:0.19
Consensus pattern (37 bp):
CCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCT
Left flanking sequence: Indices 131424 -- 131923
AGGGAAGGAAGGGAAGAGACCCGGGAAGGAAGGGAAGGGAGTTTCCCTTCCCCGGTTTCCTTTCC
CTGCCGCTAGGGAAGAGAGTTTCCTTCCTTTCCCGGGAAAGAAGGGAAGGGAAGAGAGTTTCTTT
CCTTTCCCTTTTCCTTTCCCTAGGGAAGAGAGGGAATTTCCTTTACCCTAGCTAGGGAAGAGAGG
GAAGGGAAGGTTTCCTTTCCCTTAGCTAGGGAAGAGAGGGTTTCCTTTCCCGAGGGAAGGGGAGG
TTTCCTTTCCCTGCCGCTAAAGGTTTCCTTTCCCTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGC
TCTACCTTTCTGATTAGCATGCTTTCTGATTAGCATACTTTCTGATTAGTGTATGGGGTATTGAG
AGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTTCTGATTGGTGTGTGGGGTATTGAGAGAGGGGA
AGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTC
Right flanking sequence: Indices 132048 -- 132547
TAGAACCAGTCCTTCCACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGAAGGGAA
AAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATGGAGTCG
ATCGGGGTGGGGACAGAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTGGATAAGGCCGTA
CCGGAGAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAG
AGAGAAAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTATGCGGA
GGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGCGGAAGAAAGAGA
GAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAGAGAAAGGTTGCG
CACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAA
Found at i:132281 original size:27 final size:27
Alignment explanation
Indices: 132217--132284 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
132207 TGGAGCCAGT
*
132217 CGGGGAATGGACTGGATAAGGCCGTAC
1 CGGGGAATGGGCTGGATAAGGCCGTAC
* * *
132244 CGGAGAATGGGCTGGATCAGGCGGTAC
1 CGGGGAATGGGCTGGATAAGGCCGTAC
132271 CGGGGAATGGGCTG
1 CGGGGAATGGGCTG
132285 AAGGCCTGGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.22, C:0.18, G:0.46, T:0.15
Consensus pattern (27 bp):
CGGGGAATGGGCTGGATAAGGCCGTAC
Left flanking sequence: Indices 131717 -- 132216
CTCAGCTAGGGAAGAGAAGAGGTGGCTTGGGCTCTACCTTTCTGATTAGCATGCTTTCTGATTAG
CATACTTTCTGATTAGTGTATGGGGTATTGAGAGAAGGGAAGAGGTTGCTTGGGGCTCTACCTTT
CTGATTGGTGTGTGGGGTATTGAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGAT
TGGGCCGATCTCCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCTCCCAGTCGAGTGGGAA
GCCAGTCCCTCCTCTACCTCCCCCAGTCGAGTGGGAAGCCAGTCCCTCTACCCTCCCTAGTCGAG
TGGGAATAGAACCAGTCCTTCCACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGA
AGGGAAAAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATG
GAGTCGATCGGGGTGGGGACAGAGCCAGTGCTGGATGGAGCCAGT
Right flanking sequence: Indices 132285 -- 132784
AAGGCCTGGAAGGGGCAGGAGAGAGAGAAAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGA
GTTTCTTCCCGGTATTATGCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTT
TCTTCTCGGGCGGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
GCGGGAGAAAGAGAAAGGTTGCGCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCG
CAACCTTCTCCGCCAAAGCTGAAGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTA
TTCCCACTCGACTGGCTCTATCCCCACTCGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGA
GGGACTGGCTTCCCAATCGATTCAAGCCCAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTT
CCTCTCTAGGGTAGGGGAAACCCCTATTCCCTGGGGTAAGGGAAA
Found at i:132454 original size:56 final size:56
Alignment explanation
Indices: 132368--132501 Score: 198
Period size: 56 Copynumber: 2.4 Consensus size: 56
132358 CCGGTATTAT
* * * *
132368 GCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTT-CTCGG
1 GCGGAAGAAAGAGAAAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCT-GG
*
132424 GCGGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
1 GCGGAAGAAAGAGAAAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
*
132480 GCGGGAGAAAGAGAAAGGTTGC
1 GCGGAAGAAAGAGAAAGGTTGC
132502 GCACTTTAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
56 68 0.97
57 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (56 bp):
GCGGAAGAAAGAGAAAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGG
Left flanking sequence: Indices 131868 -- 132367
GAGAGAGGGGAAGAGGGGGTGGAAGAAAGGATTCCCCAATCGATTGGGCCGATCTCCCCAGTCGA
GTGGGAAGCCAGTCCCTCCTCTACCTCTCCCAGTCGAGTGGGAAGCCAGTCCCTCCTCTACCTCC
CCCAGTCGAGTGGGAAGCCAGTCCCTCTACCCTCCCTAGTCGAGTGGGAATAGAACCAGTCCTTC
CACCTCCCCCAAATCCCAGGCTTTCGCTTTAGCTTCGGCAGAGAAGGGAAAAGGTGGCTTGGAGC
TCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCATCAGATGGAGTCGATCGGGGTGGGGACA
GAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTGGATAAGGCCGTACCGGAGAATGGGCTG
GATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAGAGAGAAAGTTTGCGC
ACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTAT
Right flanking sequence: Indices 132502 -- 133001
GCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCCGCCAAAGCTGA
AGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTATTCCCACTCGACTGGCTCTATC
CCCACTCGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGAGGGACTGGCTTCCCAATCGATT
CAAGCCCAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTTCCTCTCTAGGGTAGGGGAAACC
CCTATTCCCTGGGGTAAGGGAAACCCCCTCTTCCCTGGGTGGGGGAAACCCCCTTTCCCTGGGGT
AAAGGAAATCCCCTCTTCCCTAGTTGAGGAGGAGGGAACCTTTAGTTGAGGGGGAGAAACCCTTC
CCTTCCCTCGGGAAAGGAAACCCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTCCTTC
TCTTCCCTAGGGTAGAGTAAACCCTCCCTCGAGCGGACAATCGGA
Found at i:132626 original size:20 final size:20
Alignment explanation
Indices: 132601--132664 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
132591 AGTGGAAGGG
*
132601 CTGGCTCTATTCCCACTCGA
1 CTGGCTCTATCCCCACTCGA
132621 CTGGCTCTATCCCCACTCGA
1 CTGGCTCTATCCCCACTCGA
*
132641 CTGGCTCCATCCCCACTCGA
1 CTGGCTCTATCCCCACTCGA
132661 CTGG
1 CTGG
132665 GGAGGGTGGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.14, C:0.44, G:0.17, T:0.25
Consensus pattern (20 bp):
CTGGCTCTATCCCCACTCGA
Left flanking sequence: Indices 132101 -- 132600
CAGAGAAGGGAAAAGGTGGCTTGGAGCTCTACCTTTCCCTTTCCACTGGCCCTCCACCCCTCCAT
CAGATGGAGTCGATCGGGGTGGGGACAGAGCCAGTGCTGGATGGAGCCAGTCGGGGAATGGACTG
GATAAGGCCGTACCGGAGAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAA
GGGGCAGGAGAGAGAGAAAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCG
GTATTATGCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGC
GGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAG
AGAAAGGTTGCGCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCC
GCCAAAGCTGAAGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGG
Right flanking sequence: Indices 132665 -- 133164
GGAGGGTGGAGGGACTGGCTTCCCAATCGATTCAAGCCCAGCCCAATCGATTGGGGAATCCCCCC
CTCCACCCTTCCTCTCTAGGGTAGGGGAAACCCCTATTCCCTGGGGTAAGGGAAACCCCCTCTTC
CCTGGGTGGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAATCCCCTCTTCCCTAGTTGAGGAGGA
GGGAACCTTTAGTTGAGGGGGAGAAACCCTTCCCTTCCCTCGGGAAAGGAAACCCTCTCTTCCCT
AGCGGCAGGGAAAGGAAACCTCCCCTTCCTTCTCTTCCCTAGGGTAGAGTAAACCCTCCCTCGAG
CGGACAATCGGACGATAAGACGATGGATCAGACCAATCAGACGAGAAGATGAGACGATAACTCCG
AGAAGACGATAGATACTCCCCCCAGCGGGTAAAGAAAAGGGGAAGGAAAAGCCTTCTCTTCCGGT
GCTTGGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTG
Found at i:132776 original size:25 final size:26
Alignment explanation
Indices: 132748--132847 Score: 125
Period size: 25 Copynumber: 4.0 Consensus size: 26
132738 TTCCTCTCTA
* *
132748 GGGTAGGGGAAA-CCCCTATTCCCTG
1 GGGTAAGGGAAACCCCCTCTTCCCTG
132773 GGGTAAGGGAAACCCCCTCTTCCCT-
1 GGGTAAGGGAAACCCCCTCTTCCCTG
**
132798 GGGTGGGGGAAACCCCCT-TTCCCTG
1 GGGTAAGGGAAACCCCCTCTTCCCTG
* *
132823 GGGTAAAGGAAATCCCCTCTTCCCT
1 GGGTAAGGGAAACCCCCTCTTCCCT
132848 AGTTGAGGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
24 6 0.09
25 41 0.64
26 17 0.27
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (26 bp):
GGGTAAGGGAAACCCCCTCTTCCCTG
Left flanking sequence: Indices 132248 -- 132747
GAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAGAGAGA
AAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTATGCGGAGGAGA
GAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGCGGAAGAAAGAGAGAGGT
TGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAGAGAAAGGTTGCGCACTT
TAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCCGCCAAAGCTGAAGCGAA
AGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTATTCCCACTCGACTGGCTCTATCCCCACT
CGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGAGGGACTGGCTTCCCAATCGATTCAAGCC
CAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTTCCTCTCTA
Right flanking sequence: Indices 132848 -- 133347
AGTTGAGGAGGAGGGAACCTTTAGTTGAGGGGGAGAAACCCTTCCCTTCCCTCGGGAAAGGAAAC
CCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTCCTTCTCTTCCCTAGGGTAGAGTAAA
CCCTCCCTCGAGCGGACAATCGGACGATAAGACGATGGATCAGACCAATCAGACGAGAAGATGAG
ACGATAACTCCGAGAAGACGATAGATACTCCCCCCAGCGGGTAAAGAAAAGGGGAAGGAAAAGCC
TTCTCTTCCGGTGCTTGGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTGGCAATTGG
AACCGCTGCTAAGGGCACTGGAACCAGTTAGTAGGTCTCCTACTCTCCCCTTCACCGATCGTTCA
CAAGCCTGTAAGGTCCATCTGGAGGTCTTTCCGTTAATGCTTTGGTTGGGAGGGAGAGGGAAGGT
ACTGCGGGGAAGGGGAAAGAGCGAGAGGTTTGGATTGGTGGGAGG
Found at i:132807 original size:50 final size:50
Alignment explanation
Indices: 132748--132847 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
132738 TTCCTCTCTA
*
132748 GGGTAGGGGAAA-CCCCTATTCCCTGGGGTAAGGGAAACCCCCTCTTCCCT
1 GGGTAGGGGAAACCCCCT-TTCCCTGGGGTAAAGGAAACCCCCTCTTCCCT
* *
132798 GGGTGGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAATCCCCTCTTCCCT
1 GGGTAGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAACCCCCTCTTCCCT
132848 AGTTGAGGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 41 0.89
51 5 0.11
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (50 bp):
GGGTAGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAACCCCCTCTTCCCT
Left flanking sequence: Indices 132248 -- 132747
GAATGGGCTGGATCAGGCGGTACCGGGGAATGGGCTGAAGGCCTGGAAGGGGCAGGAGAGAGAGA
AAGTTTGCGCACTTCAAAGGGCTCTACCTTCGATTGAGTTTCTTCCCGGTATTATGCGGAGGAGA
GAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGGGTTTCTTCTCGGGCGGAAGAAAGAGAGAGGT
TGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCCTGGGCGGGAGAAAGAGAAAGGTTGCGCACTT
TAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCTCCGCAACCTTCTCCGCCAAAGCTGAAGCGAA
AGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCTCTATTCCCACTCGACTGGCTCTATCCCCACT
CGACTGGCTCCATCCCCACTCGACTGGGGAGGGTGGAGGGACTGGCTTCCCAATCGATTCAAGCC
CAGCCCAATCGATTGGGGAATCCCCCCCTCCACCCTTCCTCTCTA
Right flanking sequence: Indices 132848 -- 133347
AGTTGAGGAGGAGGGAACCTTTAGTTGAGGGGGAGAAACCCTTCCCTTCCCTCGGGAAAGGAAAC
CCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTCCTTCTCTTCCCTAGGGTAGAGTAAA
CCCTCCCTCGAGCGGACAATCGGACGATAAGACGATGGATCAGACCAATCAGACGAGAAGATGAG
ACGATAACTCCGAGAAGACGATAGATACTCCCCCCAGCGGGTAAAGAAAAGGGGAAGGAAAAGCC
TTCTCTTCCGGTGCTTGGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTGGCAATTGG
AACCGCTGCTAAGGGCACTGGAACCAGTTAGTAGGTCTCCTACTCTCCCCTTCACCGATCGTTCA
CAAGCCTGTAAGGTCCATCTGGAGGTCTTTCCGTTAATGCTTTGGTTGGGAGGGAGAGGGAAGGT
ACTGCGGGGAAGGGGAAAGAGCGAGAGGTTTGGATTGGTGGGAGG
Found at i:132890 original size:22 final size:22
Alignment explanation
Indices: 132847--132887 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
132837 CCCTCTTCCC
*
132847 TAGTTGAGGAGGAGGGAACCTT
1 TAGTTGAGGAGGAGGAAACCTT
*
132869 TAGTTGAGGGGGA-GAAACC
1 TAGTTGAGGAGGAGGAAACC
132888 CTTCCCTTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.29, C:0.10, G:0.41, T:0.20
Consensus pattern (22 bp):
TAGTTGAGGAGGAGGAAACCTT
Left flanking sequence: Indices 132347 -- 132846
TGAGTTTCTTCCCGGTATTATGCGGAGGAGAGAGAAAGTTTGCTTCAAGCTCTACCTCCGATTGG
GTTTCTTCTCGGGCGGAAGAAAGAGAGAGGTTGCTTCAAGCTCTACCTCCGATTGGGTCTCTTCC
TGGGCGGGAGAAAGAGAAAGGTTGCGCACTTTAAAGGGCTCTACCTGAAAGGGAAAGGTAAAGCT
CCGCAACCTTCTCCGCCAAAGCTGAAGCGAAAGCCTGGGATTTGGGGGAAGTGGAAGGGCTGGCT
CTATTCCCACTCGACTGGCTCTATCCCCACTCGACTGGCTCCATCCCCACTCGACTGGGGAGGGT
GGAGGGACTGGCTTCCCAATCGATTCAAGCCCAGCCCAATCGATTGGGGAATCCCCCCCTCCACC
CTTCCTCTCTAGGGTAGGGGAAACCCCTATTCCCTGGGGTAAGGGAAACCCCCTCTTCCCTGGGT
GGGGGAAACCCCCTTTCCCTGGGGTAAAGGAAATCCCCTCTTCCC
Right flanking sequence: Indices 132888 -- 133387
CTTCCCTTCCCTCGGGAAAGGAAACCCTCTCTTCCCTAGCGGCAGGGAAAGGAAACCTCCCCTTC
CTTCTCTTCCCTAGGGTAGAGTAAACCCTCCCTCGAGCGGACAATCGGACGATAAGACGATGGAT
CAGACCAATCAGACGAGAAGATGAGACGATAACTCCGAGAAGACGATAGATACTCCCCCCAGCGG
GTAAAGAAAAGGGGAAGGAAAAGCCTTCTCTTCCGGTGCTTGGGAACTGATTCAACGTCGACTGA
TAGCACTGCTGCTGGTGGCAATTGGAACCGCTGCTAAGGGCACTGGAACCAGTTAGTAGGTCTCC
TACTCTCCCCTTCACCGATCGTTCACAAGCCTGTAAGGTCCATCTGGAGGTCTTTCCGTTAATGC
TTTGGTTGGGAGGGAGAGGGAAGGTACTGCGGGGAAGGGGAAAGAGCGAGAGGTTTGGATTGGTG
GGAGGGCTCGGGAGCTCCATGAGCTCCATACGGGGGCAGCCGGGA
Found at i:134450 original size:9 final size:9
Alignment explanation
Indices: 134436--134464 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
134426 CTCTGGAGAG
134436 CCAACTCCT
1 CCAACTCCT
134445 CCAACTCCT
1 CCAACTCCT
134454 CCAACTCCT
1 CCAACTCCT
134463 CC
1 CC
134465 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 133936 -- 134435
GTATTTGTTAACAGTCATGGCAATCGGTTCGTTCTTCCTTTCCTGGTTTTCATGGGAGTTTGTTA
GTGGGAGCTACAGTGGAAGCAAGAGCTATAAGTGGCGCTCTCTCTGTATACCATAAGGTTAAGCA
AGTGCCAGTGCCAGTGCCAGTGCTGGTGGTGGGGTGCGTTTCCCCGACTAGTCGAAGTCCTTCGC
CTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACCAAGAG
CACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAAAGGCC
TTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTCTCTCT
CGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCGGGTAG
AAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAG
Right flanking sequence: Indices 134465 -- 134964
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTTCGGGCCAACTC
CTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCAACTCCTCCCACTCCCCCCACTCCTCCCAC
TCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGG
GGAGTCAGGTTCAATCCACTTAAATAGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTG
CTACGGTAGGCTACTGACGCTACGCCCGCTACGGCTACGTTAGCA
Found at i:134607 original size:36 final size:38
Alignment explanation
Indices: 134561--134639 Score: 117
Period size: 36 Copynumber: 2.1 Consensus size: 38
134551 TTCGTTCGGA
134561 CCCTATCGGTCGGAGTTGCCCT-TC-GGGCCAACTCCT
1 CCCTATCGGTCGGAGTTGCCCTATCGGGGCCAACTCCT
*
134597 CCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCAACTCCT
1 CCCTATCGGTCGGAGTTGCCCTATC-G-GGGCCAACTCCT
134637 CCC
1 CCC
134640 ACTCCCCCCA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
36 21 0.55
37 2 0.05
40 15 0.39
ACGTcount: A:0.13, C:0.38, G:0.25, T:0.24
Consensus pattern (38 bp):
CCCTATCGGTCGGAGTTGCCCTATCGGGGCCAACTCCT
Left flanking sequence: Indices 134061 -- 134560
AAGCAAGTGCCAGTGCCAGTGCCAGTGCTGGTGGTGGGGTGCGTTTCCCCGACTAGTCGAAGTCC
TTCGCCTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACC
AAGAGCACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAA
AGGCCTTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTC
TCTCTCGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCG
GGTAGAAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACTCCTCCAACT
CCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCAC
TCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGA
Right flanking sequence: Indices 134640 -- 135139
ACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTC
ACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGGCCCTAGAGGGCGGC
CCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACTTAAATAGCGAAGGATACGGGGATTC
TTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGCTACGCCCGCTACGGCTACGTTAGCA
CGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCGGGTAAAATACATGACTTTAAAGCAG
GTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAATAGGGGGGCAAATAATGGATCCATG
GGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACTTTGTT
Found at i:134649 original size:9 final size:9
Alignment explanation
Indices: 134631--134684 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
134621 CGGAGGGCCA
134631 ACTCCTCCC
1 ACTCCTCCC
*
134640 ACTCCCCCC
1 ACTCCTCCC
134649 ACTCCTCCC
1 ACTCCTCCC
*
134658 ACTCCCCCC
1 ACTCCTCCC
134667 ACTCCTCCC
1 ACTCCTCCC
134676 ACTCCTCCC
1 ACTCCTCCC
134685 GGTAGGTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 134131 -- 134630
CTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACCAAGAG
CACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAAAGGCC
TTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTCTCTCT
CGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCGGGTAG
AAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACTCCTCCAACTCCTCC
AACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGAC
CGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTTCG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCA
Right flanking sequence: Indices 134685 -- 135184
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATC
GGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACTTAAAT
AGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGCTACGC
CCGCTACGGCTACGTTAGCACGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCGGGTAA
AATACATGACTTTAAAGCAGGTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAATAGGG
GGGCAAATAATGGATCCATGGGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACTTTGTT
GGAACGGAGCTACTCCTGTTGGGGGCGGGACTGCCCGCCCCCCCT
Found at i:134652 original size:18 final size:18
Alignment explanation
Indices: 134631--134680 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
134621 CGGAGGGCCA
134631 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
134649 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
134667 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
134681 TCCCGGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 134131 -- 134630
CTCGATGCACAGGAGAACTCCCTCTCGGATTTTGGGACACCCCGCCGAACACCAATGACCAAGAG
CACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGGTAAGCGAAAAGGCC
TTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGGGAAGCTCTCTCTCT
CGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGCTCCGTCTCGGGTAG
AAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACTCCTCCAACTCCTCC
AACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGAC
CGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTTCG
GGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCA
Right flanking sequence: Indices 134681 -- 135180
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCC
TATCGGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACTT
AAATAGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGCT
ACGCCCGCTACGGCTACGTTAGCACGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCGG
GTAAAATACATGACTTTAAAGCAGGTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAAT
AGGGGGGCAAATAATGGATCCATGGGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACTT
TGTTGGAACGGAGCTACTCCTGTTGGGGGCGGGACTGCCCGCCCC
Found at i:134721 original size:35 final size:35
Alignment explanation
Indices: 134682--134809 Score: 220
Period size: 35 Copynumber: 3.7 Consensus size: 35
134672 TCCCACTCCT
134682 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
134717 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
134752 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** * *
134787 CCCTATCGGTCGGAGTGGCCCTC
1 CCCGGTAGGTCGGAGTGGTCCTC
134810 CTATCGGAGG
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 134182 -- 134681
CCAATGACCAAGAGCACGTAAGGTACAGAACTGCTAGATACGCGTGACAACCTGGAGTGGGTTGG
TAAGCGAAAAGGCCTTGCTCTCCCTTGGCTTTAGAGTCTCCCTTTCCGCCCTCTCTTGAAGATGG
GAAGCTCTCTCTCTCGGGCGGGTGGAACCCGGAAAAACCTCTTCCGCTTCCTCTCCCTCCGGAGC
TCCGTCTCGGGTAGAAGACACTCCCTTTTCGCTCTTGGGCGAGAACAAACTCTGGAGAGCCAACT
CCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCC
TTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTC
GGAGTTGCCCTTCGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTATCGGAGGGCCAACTCCT
CCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 134810 -- 135309
CTATCGGAGGGCCCTAGAGGGCGGCCCCCCTTGAGTCCCCCAAGGGGAGTCAGGTTCAATCCACT
TAAATAGCGAAGGATACGGGGATTCTTCGGACCTATTTGCCGCTGCTACGGTAGGCTACTGACGC
TACGCCCGCTACGGCTACGTTAGCACGCCCGCGTAAGGCGGCTACTGACGCACGCCCGCGTAGCG
GGTAAAATACATGACTTTAAAGCAGGTGTAACATATCTTTGGGGTGCAATGGGGTAGATAGGAAA
TAGGGGGGCAAATAATGGATCCATGGGGTGTCTAGCTCGGTTGGTAGAGCCACGGGGGCCCCACT
TTGTTGGAACGGAGCTACTCCTGTTGGGGGCGGGACTGCCCGCCCCCCCTTGCATTACTTCACTT
CCGGTTTCGTAGTTTTCTACTTTAAACACAGATCCGTAAGCGGTCTGAGGGCGCATAGATCGGGT
TCATTACCCTTCCTATGTATGATGAGAATACCTTCATCCGATTTA
Found at i:135989 original size:39 final size:39
Alignment explanation
Indices: 135935--136012 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
135925 GTCAAGCCAC
135935 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
1 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
135974 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
1 TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
136013 CTTTTCAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (39 bp):
TAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGA
Left flanking sequence: Indices 135435 -- 135934
GGCAGGCCGGATCCTTCAAGGGGGGTTGCTTCGTTGGAGGTTTCAAAGGGTTCCATCGGTTTTCA
TTACCATCAAACCTTCAATATCGCATAGTATGCTGCTTTGAAACAACAAGTCTCGTATCTGGTAA
TCCCAATCAACTTTCATTACCATCAAATGATTGGGATTCCAATAAAGCTTGGTCTCAAAATGCCC
TCAAAAGTCATGTATTTTAAAATTAATTGAATTTAATTTAATTTGGAATTTAATTTATCACTTTA
ATTAATAATTAATTTTCAATTAAATTAAATTAAAGTAACTTAGCCGCCCTTTAAATAAAGGGTGT
ATTCGCCATTTCCGTCCGGTTCAATAAAGCAAGGAGGCTTTTTCAACGGATCAGTAACGAGTCTA
TATCTTCTGGGCTGTCGGAGAAATTCCAGCATTTCTTGAATCGCTTGAAGTTCTGTCTCATTCTC
AAATATTGCTTGCGTTCCTTGAAGGTTTTTCTCCAGTCAAGCCAC
Right flanking sequence: Indices 136013 -- 136512
CTTTTCAATAAAAGGCTCCTCGTCCTTCGCTTTGAGCAAAGCTCTCAGTTCCTGAATCTCTTCCT
TCGACTTTTCCAATCCATGCACTTTGAGGGCTGTCTCTCTGCTCCGCTTCCCGCACTTTTAAAAG
GCCTTTTAAAAGGCCCGTTTTCCCACTCGAAAGTGTTACCACCTCCCATTCTTAGAGTCTTAGAG
ATGGAATCCCAAGTTCTAGAGGCCCTTTAAGGACCTTCATTTCTCCCTCGAATTCGGGGAAGAGT
GAACCACAAATTCATTCTTTGGTAAGTGTTCTTGCTCGCATTGAGATTCCAAACACCCTTTAAGC
GCTTTTTGCACCCTTTGGTAAGTGCGCGTTAGACACTATAATTTTCCGACAAGAGAAAGCTGCTG
CAAATCGTTCGATAATGAGCCTTTAAAAGGGGTAAAGACCGTGGAAATATCGTTATGCACGAGAG
TTACGAGAAAATATGGACGCAAAAAAGAGGACCTTTAAGGCGCCC
Found at i:136150 original size:12 final size:12
Alignment explanation
Indices: 136133--136157 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
136123 GCTTCCCGCA
136133 CTTTTAAAAGGC
1 CTTTTAAAAGGC
136145 CTTTTAAAAGGC
1 CTTTTAAAAGGC
136157 C
1 C
136158 CGTTTTCCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (12 bp):
CTTTTAAAAGGC
Left flanking sequence: Indices 135633 -- 136132
AAAGTCATGTATTTTAAAATTAATTGAATTTAATTTAATTTGGAATTTAATTTATCACTTTAATT
AATAATTAATTTTCAATTAAATTAAATTAAAGTAACTTAGCCGCCCTTTAAATAAAGGGTGTATT
CGCCATTTCCGTCCGGTTCAATAAAGCAAGGAGGCTTTTTCAACGGATCAGTAACGAGTCTATAT
CTTCTGGGCTGTCGGAGAAATTCCAGCATTTCTTGAATCGCTTGAAGTTCTGTCTCATTCTCAAA
TATTGCTTGCGTTCCTTGAAGGTTTTTCTCCAGTCAAGCCACTAAGAACCTTTAATTTAATTTCA
TTGAAAATTAAAGTGATAAGAACCTTTAATTTAATTTCATTGAAAATTAAAGTGACTTTTCAATA
AAAGGCTCCTCGTCCTTCGCTTTGAGCAAAGCTCTCAGTTCCTGAATCTCTTCCTTCGACTTTTC
CAATCCATGCACTTTGAGGGCTGTCTCTCTGCTCCGCTTCCCGCA
Right flanking sequence: Indices 136158 -- 136657
CGTTTTCCCACTCGAAAGTGTTACCACCTCCCATTCTTAGAGTCTTAGAGATGGAATCCCAAGTT
CTAGAGGCCCTTTAAGGACCTTCATTTCTCCCTCGAATTCGGGGAAGAGTGAACCACAAATTCAT
TCTTTGGTAAGTGTTCTTGCTCGCATTGAGATTCCAAACACCCTTTAAGCGCTTTTTGCACCCTT
TGGTAAGTGCGCGTTAGACACTATAATTTTCCGACAAGAGAAAGCTGCTGCAAATCGTTCGATAA
TGAGCCTTTAAAAGGGGTAAAGACCGTGGAAATATCGTTATGCACGAGAGTTACGAGAAAATATG
GACGCAAAAAAGAGGACCTTTAAGGCGCCCTTTAAGTCTGTCACTATTTTTGTTTATTCATGGGT
GTTTGTTTTGATGACCCTCTCAAGGTCGGGCTGGCCCCCTAAGGGCGGGGTGCTTGCTAGCGGTT
ACTTCGGGACTGACTCCCCCGCCTACGGGAGTTTGGAGTTGGCCG
Found at i:136766 original size:8 final size:8
Alignment explanation
Indices: 136755--136799 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
136745 TCGTCTTATC
136755 GTCTGATT
1 GTCTGATT
*
136763 GTCTCATT
1 GTCTGATT
136771 GTCTGATT
1 GTCTGATT
136779 G---GATT
1 GTCTGATT
*
136784 GTCTTATT
1 GTCTGATT
136792 GTCTGATT
1 GTCTGATT
136800 AAGCTGTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
5 5 0.17
8 25 0.83
ACGTcount: A:0.13, C:0.13, G:0.22, T:0.51
Consensus pattern (8 bp):
GTCTGATT
Left flanking sequence: Indices 136255 -- 136754
TCGAATTCGGGGAAGAGTGAACCACAAATTCATTCTTTGGTAAGTGTTCTTGCTCGCATTGAGAT
TCCAAACACCCTTTAAGCGCTTTTTGCACCCTTTGGTAAGTGCGCGTTAGACACTATAATTTTCC
GACAAGAGAAAGCTGCTGCAAATCGTTCGATAATGAGCCTTTAAAAGGGGTAAAGACCGTGGAAA
TATCGTTATGCACGAGAGTTACGAGAAAATATGGACGCAAAAAAGAGGACCTTTAAGGCGCCCTT
TAAGTCTGTCACTATTTTTGTTTATTCATGGGTGTTTGTTTTGATGACCCTCTCAAGGTCGGGCT
GGCCCCCTAAGGGCGGGGTGCTTGCTAGCGGTTACTTCGGGACTGACTCCCCCGCCTACGGGAGT
TTGGAGTTGGCCGCCTAACGCTCCGCTTGCTAGTACGTGGCTTCGTCATAGCATTGAAGCCGACA
GCTCCATAGACGTCTCCCTATATACTGCATTTCCATCGTCTTATC
Right flanking sequence: Indices 136800 -- 137299
AAGCTGTAACAGCTGATTGAGCAGACGCACGTAGACTCCTCTCAAAGGCAAAGCCGCCCTTTTAA
AAGTCACTCAATCTTTGGCCAAGCCGCTACGCGCAAACTCTTTGGAAAAGGCAAAGCCTTTAAAA
AGCGAACGCGCACTCGGAGTAAAAGGCAAAGCCTTTTAAAACGGCGCGGCAAGGAAACGAAGTCA
TAATGAGTCGAAAGGTTGGGTCGTACCCATCTAATAGGCTCGTTAGGGCTACAGCTACTACGCGG
GTAGACCCATAAGCTGCACGAGCTACGCCTACAGCTATGCGGGCTACGCGCCTGAGTAAGGCCGG
GTTACGTGCTGTGGCGCTACACGGGCAGAGCGGACGGGACGGGCGTACTACAGCTACGCGGGAGC
AGGCCCAGATGGGGTAGCCAAATACATAGGCGTAGCGGGTGATTTAATTTAATTTAATTTACCCG
TAAGCTACGCGGACCCATATACGTAAGCTGGCGGGTCCGTAAGCT
Found at i:136783 original size:21 final size:21
Alignment explanation
Indices: 136759--136799 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
136749 CTTATCGTCT
136759 GATTGTCTCATTGTCTGATTG
1 GATTGTCTCATTGTCTGATTG
*
136780 GATTGTCTTATTGTCTGATT
1 GATTGTCTCATTGTCTGATT
136800 AAGCTGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.22, T:0.51
Consensus pattern (21 bp):
GATTGTCTCATTGTCTGATTG
Left flanking sequence: Indices 136259 -- 136758
ATTCGGGGAAGAGTGAACCACAAATTCATTCTTTGGTAAGTGTTCTTGCTCGCATTGAGATTCCA
AACACCCTTTAAGCGCTTTTTGCACCCTTTGGTAAGTGCGCGTTAGACACTATAATTTTCCGACA
AGAGAAAGCTGCTGCAAATCGTTCGATAATGAGCCTTTAAAAGGGGTAAAGACCGTGGAAATATC
GTTATGCACGAGAGTTACGAGAAAATATGGACGCAAAAAAGAGGACCTTTAAGGCGCCCTTTAAG
TCTGTCACTATTTTTGTTTATTCATGGGTGTTTGTTTTGATGACCCTCTCAAGGTCGGGCTGGCC
CCCTAAGGGCGGGGTGCTTGCTAGCGGTTACTTCGGGACTGACTCCCCCGCCTACGGGAGTTTGG
AGTTGGCCGCCTAACGCTCCGCTTGCTAGTACGTGGCTTCGTCATAGCATTGAAGCCGACAGCTC
CATAGACGTCTCCCTATATACTGCATTTCCATCGTCTTATCGTCT
Right flanking sequence: Indices 136800 -- 137299
AAGCTGTAACAGCTGATTGAGCAGACGCACGTAGACTCCTCTCAAAGGCAAAGCCGCCCTTTTAA
AAGTCACTCAATCTTTGGCCAAGCCGCTACGCGCAAACTCTTTGGAAAAGGCAAAGCCTTTAAAA
AGCGAACGCGCACTCGGAGTAAAAGGCAAAGCCTTTTAAAACGGCGCGGCAAGGAAACGAAGTCA
TAATGAGTCGAAAGGTTGGGTCGTACCCATCTAATAGGCTCGTTAGGGCTACAGCTACTACGCGG
GTAGACCCATAAGCTGCACGAGCTACGCCTACAGCTATGCGGGCTACGCGCCTGAGTAAGGCCGG
GTTACGTGCTGTGGCGCTACACGGGCAGAGCGGACGGGACGGGCGTACTACAGCTACGCGGGAGC
AGGCCCAGATGGGGTAGCCAAATACATAGGCGTAGCGGGTGATTTAATTTAATTTAATTTACCCG
TAAGCTACGCGGACCCATATACGTAAGCTGGCGGGTCCGTAAGCT
Found at i:137297 original size:16 final size:17
Alignment explanation
Indices: 137276--137309 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
137266 GACCCATATA
*
137276 CGTAAGCT-GGCGGGTC
1 CGTAAGCTACGCGGGTC
137292 CGTAAGCTACGCGGGTC
1 CGTAAGCTACGCGGGTC
137309 C
1 C
137310 ATTAGCCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.15, C:0.29, G:0.38, T:0.18
Consensus pattern (17 bp):
CGTAAGCTACGCGGGTC
Left flanking sequence: Indices 136776 -- 137275
ATTGGATTGTCTTATTGTCTGATTAAGCTGTAACAGCTGATTGAGCAGACGCACGTAGACTCCTC
TCAAAGGCAAAGCCGCCCTTTTAAAAGTCACTCAATCTTTGGCCAAGCCGCTACGCGCAAACTCT
TTGGAAAAGGCAAAGCCTTTAAAAAGCGAACGCGCACTCGGAGTAAAAGGCAAAGCCTTTTAAAA
CGGCGCGGCAAGGAAACGAAGTCATAATGAGTCGAAAGGTTGGGTCGTACCCATCTAATAGGCTC
GTTAGGGCTACAGCTACTACGCGGGTAGACCCATAAGCTGCACGAGCTACGCCTACAGCTATGCG
GGCTACGCGCCTGAGTAAGGCCGGGTTACGTGCTGTGGCGCTACACGGGCAGAGCGGACGGGACG
GGCGTACTACAGCTACGCGGGAGCAGGCCCAGATGGGGTAGCCAAATACATAGGCGTAGCGGGTG
ATTTAATTTAATTTAATTTACCCGTAAGCTACGCGGACCCATATA
Right flanking sequence: Indices 137310 -- 137809
ATTAGCCTGTAAGCTATGTGGTCCCAAATACCCATTTGCCGCTGCTACGGCTACTGACGCTACGC
CCGCTACGGCTCAAAGCTAACGCGCTAAAGACTCTTTGGCAAAGTCAAAGCCTAGCAGACTCGAA
GGAGAAGTCGCGGGCGGACTCAAAGTCAGAGGCAAAGCTTAAAGTCATGTATTTTACCGGCTTTC
TTTAAAGTACTTTAATTTTCAATGAAATTAAATTAAAGGTTCTTTGAGTTCACGCAAACGAATTT
ACTTTAATTTTCAATTAAATTAAGGTGGGGGCCTCCGGCCCCCAGTAACGCTTTAATTTTAAACT
AAATTAAATTCAAGTACTTTCAAGAAAGAAAGAAAGTGCCGTGGATACTTTAATTTAATTTAATT
GAAAATTAAAGTATCTTCAGTCCGCCCTTTTAAAAGTTCGCACGCACGTAGACTCTTTGGCAAAG
GCAAAGCCGCGTAGGCGCACGTAGACGGCCAAGCCGCGACTTTTA
Found at i:138107 original size:34 final size:34
Alignment explanation
Indices: 138069--138133 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
138059 GCACGTTTTA
** *
138069 CTTTAATTTTCAATTAAATTAAATTAAAGTAACG
1 CTTTAATTTGAAACTAAATTAAATTAAAGTAACG
*
138103 CTTTAATTTGAAACTAAATTAAATTCAAGTA
1 CTTTAATTTGAAACTAAATTAAATTAAAGTA
138134 CTTTCAAGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (34 bp):
CTTTAATTTGAAACTAAATTAAATTAAAGTAACG
Left flanking sequence: Indices 137569 -- 138068
TACTTTAATTTTCAATTAAATTAAGGTGGGGGCCTCCGGCCCCCAGTAACGCTTTAATTTTAAAC
TAAATTAAATTCAAGTACTTTCAAGAAAGAAAGAAAGTGCCGTGGATACTTTAATTTAATTTAAT
TGAAAATTAAAGTATCTTCAGTCCGCCCTTTTAAAAGTTCGCACGCACGTAGACTCTTTGGCAAA
GGCAAAGCCGCGTAGGCGCACGTAGACGGCCAAGCCGCGACTTTTAAAAGGAGGCGCACGTAGAC
TCAAAGGCCAAGCCGTAGCGTTAGGGCGCAGACTCTTTGGAAAAGGCAAAGCTTAGCGAAGCGTA
AACTCGTCAAAGGCAAAGCCTTTTAAAAAGCGCAGACTCTTTGGAAAAGGCCGTGGTTACTTTAA
TTTAATTTAATTGAAAATTAAAGGTTCTTAGCGCCAAGCGACTTTTAAAAGGAGGCGCACGTAGA
CTCTTTCAAAGGCAAAGCCGCCCTTTTAAAAGTTCGCACGTTTTA
Right flanking sequence: Indices 138134 -- 138633
CTTTCAAGTTATTACTTTAATTTTCAATTAAATTAAATTAAAGTAAACTTAGTCCGCCCTTTTAA
TTAAAAGTTCGCGCAAACTCAAAGCTAACGCTTTTTTTAAAAGGGCGACTGAGTCAATTGATTCA
ATTGAAACTATTTAATTTAATTTAATTTAACGCTCAAACTCTTCGGATAAGTCGAAGCTTAGGAC
TCAAAGAAGAGGCCAAGCCGCTCTTTTAAAAGGAGCTCACGCGCACAGTCGAAGGCAAAGGCCTA
GCGGCAGGGGGGAGAATGAAACAGCTAGAAGGGTTGGGTGGTCCCATCTATTAGGTGGTCCCATC
CAATAGGCTCTAGAGCGGGCTACATGGGCGTGCGGGAGCAGGCCCAGTAGGTGGGGCAGCGGCTA
CGGCTAAGCAGGCCCGTAAGCTACGTAGCGGACCACCCATATCGGGAGCTTAAACCACCCATTAG
TAAACCCATTAGCGGGCCCGTAAGCTATGTAGGGAAACCCATTGA
Found at i:138465 original size:17 final size:17
Alignment explanation
Indices: 138430--138465 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
138420 AGAAGGGTTG
* *
138430 GGTGGTCCCATCTATTA
1 GGTGGTCCCATCCAATA
138447 GGTGGTCCCATCCAATA
1 GGTGGTCCCATCCAATA
138464 GG
1 GG
138466 CTCTAGAGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.19, C:0.25, G:0.28, T:0.28
Consensus pattern (17 bp):
GGTGGTCCCATCCAATA
Left flanking sequence: Indices 137930 -- 138429
CTCTTTGGAAAAGGCCGTGGTTACTTTAATTTAATTTAATTGAAAATTAAAGGTTCTTAGCGCCA
AGCGACTTTTAAAAGGAGGCGCACGTAGACTCTTTCAAAGGCAAAGCCGCCCTTTTAAAAGTTCG
CACGTTTTACTTTAATTTTCAATTAAATTAAATTAAAGTAACGCTTTAATTTGAAACTAAATTAA
ATTCAAGTACTTTCAAGTTATTACTTTAATTTTCAATTAAATTAAATTAAAGTAAACTTAGTCCG
CCCTTTTAATTAAAAGTTCGCGCAAACTCAAAGCTAACGCTTTTTTTAAAAGGGCGACTGAGTCA
ATTGATTCAATTGAAACTATTTAATTTAATTTAATTTAACGCTCAAACTCTTCGGATAAGTCGAA
GCTTAGGACTCAAAGAAGAGGCCAAGCCGCTCTTTTAAAAGGAGCTCACGCGCACAGTCGAAGGC
AAAGGCCTAGCGGCAGGGGGGAGAATGAAACAGCTAGAAGGGTTG
Right flanking sequence: Indices 138466 -- 138965
CTCTAGAGCGGGCTACATGGGCGTGCGGGAGCAGGCCCAGTAGGTGGGGCAGCGGCTACGGCTAA
GCAGGCCCGTAAGCTACGTAGCGGACCACCCATATCGGGAGCTTAAACCACCCATTAGTAAACCC
ATTAGCGGGCCCGTAAGCTATGTAGGGAAACCCATTGAGTAAACCCGCTATGTGGGCGGGTAAAC
CTGTAAGGCACCTACGCGGGCCCATATACGTAAGGCGGGTCCGGGACCCATTAGCGGGCCTGTAA
GCTATGTGGGTAAACCACCCATTAGCGGACCCACCCATTAGCGGGCCTGTGAGGTGGGTACCATT
GGGTAGACCCGTAAGCTACGCGGGTAAACCACCCATTAGCGGGTGAACCACCCATTAGCGGGTAA
ACTAAACCTGTACGGCACCTATGTGGGTAAACCCATAAGCAAGCTATGTGGGCGGTTGGGTAATG
ATCAATCAATAGAGCGGAAAGAGAGAGCTTCCAGCTCTCTTCTTC
Found at i:138834 original size:19 final size:19
Alignment explanation
Indices: 138810--138857 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
138800 CGTAAGCTAC
138810 GCGGGTAAACCACCCATTA
1 GCGGGTAAACCACCCATTA
*
138829 GCGGGTGAACCACCCATTA
1 GCGGGTAAACCACCCATTA
138848 GCGGGTAAAC
1 GCGGGTAAAC
138858 TAAACCTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (19 bp):
GCGGGTAAACCACCCATTA
Left flanking sequence: Indices 138310 -- 138809
ATAAGTCGAAGCTTAGGACTCAAAGAAGAGGCCAAGCCGCTCTTTTAAAAGGAGCTCACGCGCAC
AGTCGAAGGCAAAGGCCTAGCGGCAGGGGGGAGAATGAAACAGCTAGAAGGGTTGGGTGGTCCCA
TCTATTAGGTGGTCCCATCCAATAGGCTCTAGAGCGGGCTACATGGGCGTGCGGGAGCAGGCCCA
GTAGGTGGGGCAGCGGCTACGGCTAAGCAGGCCCGTAAGCTACGTAGCGGACCACCCATATCGGG
AGCTTAAACCACCCATTAGTAAACCCATTAGCGGGCCCGTAAGCTATGTAGGGAAACCCATTGAG
TAAACCCGCTATGTGGGCGGGTAAACCTGTAAGGCACCTACGCGGGCCCATATACGTAAGGCGGG
TCCGGGACCCATTAGCGGGCCTGTAAGCTATGTGGGTAAACCACCCATTAGCGGACCCACCCATT
AGCGGGCCTGTGAGGTGGGTACCATTGGGTAGACCCGTAAGCTAC
Right flanking sequence: Indices 138858 -- 139357
TAAACCTGTACGGCACCTATGTGGGTAAACCCATAAGCAAGCTATGTGGGCGGTTGGGTAATGAT
CAATCAATAGAGCGGAAAGAGAGAGCTTCCAGCTCTCTTCTTCCATTCCCCAATCGATTGGGGCC
GCTAACTCTCTCTCTCTCTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCCAGCCTTCGAAG
AATTCACACAGAGGCCTTGTTCCGGGAGCAAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCA
CTTCACAACCCAAACATCGCCTACAAGGCCGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGG
CACCAACAGTTTTGGTTCCACCAGCGCCAATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGC
AGCAGAAGCAGTTTCAGGACCAGTGCTGCAGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGT
GGTTCATTCCGGGTCAACAGAACGTGTCGGGTCAACAGAACATGT
Found at i:139345 original size:18 final size:18
Alignment explanation
Indices: 139322--139367 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
139312 TGGTTCATTC
*
139322 CGGGTCAACAGAACGTGT
1 CGGGTCAACAGAACATGT
139340 CGGGTCAACAGAACATGT
1 CGGGTCAACAGAACATGT
139358 CGGGTCAACA
1 CGGGTCAACA
139368 AATGGAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.15
Consensus pattern (18 bp):
CGGGTCAACAGAACATGT
Left flanking sequence: Indices 138822 -- 139321
CCCATTAGCGGGTGAACCACCCATTAGCGGGTAAACTAAACCTGTACGGCACCTATGTGGGTAAA
CCCATAAGCAAGCTATGTGGGCGGTTGGGTAATGATCAATCAATAGAGCGGAAAGAGAGAGCTTC
CAGCTCTCTTCTTCCATTCCCCAATCGATTGGGGCCGCTAACTCTCTCTCTCTCTCTCATTCCCT
GCCTCTCAGCATCGCCCCATCGCCCAGCCTTCGAAGAATTCACACAGAGGCCTTGTTCCGGGAGC
AAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAACCCAAACATCGCCTACAAGGC
CGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAGTTTTGGTTCCACCAGCGCCA
ATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGCAGTTTCAGGACCAGTGCTGC
AGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTC
Right flanking sequence: Indices 139368 -- 139867
AATGGAATGGATGCCGTCGAATCAACGTCCCCATTCCGTGTTCAGTCCGGGTAGTTCCAGGTGGT
TCCGGGTACTTCATTCCGGGTGGTTCATTCCGGGTCAAATAGAACAACCCATTCCATTCCGTTCG
TAGTTCATTTCGGGTAAACAAATGGAAGAAAGTCCCCATTCCATTCCGTTCGTAGCTCATTCCGG
GTAGGTGGTTCATTCCGGGTAGTTCATTCCTGGTAGTTCCAAGTACTTCATTCCGGATCAACAGA
ACGTGCAACAGAACGTATCAGGTCAACCCCATTTGGGAAAGCTAAAGCGAAAGCCTGGAAGAATG
GAATCTGCATCATTTGCTCGATCCAAAGCCAGAGCGAAAGCCTGCTCCCCCAGCTCGGACTAGAA
GGCTGCTGGGTATGGTGAAACTTCAGTAAGAGATCATCGACCTAAAGGCCCCTCTCCCTTCGTGG
TAGGTACCGAGCCTCACCAAATGCTGCTAGCGGCAAGTCCCTCTC
Found at i:139451 original size:14 final size:14
Alignment explanation
Indices: 139432--139467 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
139422 TTCCAGGTGG
139432 TTCCGGGTACTTCA
1 TTCCGGGTACTTCA
**
139446 TTCCGGGTGGTTCA
1 TTCCGGGTACTTCA
139460 TTCCGGGT
1 TTCCGGGT
139468 CAAATAGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.08, C:0.25, G:0.31, T:0.36
Consensus pattern (14 bp):
TTCCGGGTACTTCA
Left flanking sequence: Indices 138932 -- 139431
GAGCGGAAAGAGAGAGCTTCCAGCTCTCTTCTTCCATTCCCCAATCGATTGGGGCCGCTAACTCT
CTCTCTCTCTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCCAGCCTTCGAAGAATTCACAC
AGAGGCCTTGTTCCGGGAGCAAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAAC
CCAAACATCGCCTACAAGGCCGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAG
TTTTGGTTCCACCAGCGCCAATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGC
AGTTTCAGGACCAGTGCTGCAGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTC
CGGGTCAACAGAACGTGTCGGGTCAACAGAACATGTCGGGTCAACAAATGGAATGGATGCCGTCG
AATCAACGTCCCCATTCCGTGTTCAGTCCGGGTAGTTCCAGGTGG
Right flanking sequence: Indices 139468 -- 139967
CAAATAGAACAACCCATTCCATTCCGTTCGTAGTTCATTTCGGGTAAACAAATGGAAGAAAGTCC
CCATTCCATTCCGTTCGTAGCTCATTCCGGGTAGGTGGTTCATTCCGGGTAGTTCATTCCTGGTA
GTTCCAAGTACTTCATTCCGGATCAACAGAACGTGCAACAGAACGTATCAGGTCAACCCCATTTG
GGAAAGCTAAAGCGAAAGCCTGGAAGAATGGAATCTGCATCATTTGCTCGATCCAAAGCCAGAGC
GAAAGCCTGCTCCCCCAGCTCGGACTAGAAGGCTGCTGGGTATGGTGAAACTTCAGTAAGAGATC
ATCGACCTAAAGGCCCCTCTCCCTTCGTGGTAGGTACCGAGCCTCACCAAATGCTGCTAGCGGCA
AGTCCCTCTCCCTTCGTCAGGGTACAGCGCGTTAACCCACTTTTAAGGCTGCCCCGTCCCCCGGG
AAAGGATTAAGGTTCTTCCAGTGCGCGTAGCCAATCACTAATTGC
Found at i:139512 original size:45 final size:48
Alignment explanation
Indices: 139455--139565 Score: 129
Period size: 52 Copynumber: 2.3 Consensus size: 48
139445 ATTCCGGGTG
*
139455 GTTCATTCCGGGT-CAAATAGAA-CAA-CCCATTCCATTCCGTTCGTA
1 GTTCATTCCGGGTACAAATAGAAGAAACCCCATTCCATTCCGTTCGTA
* *
139500 GTTCATTTCGGGTAAACAAATGGAAGAAAGTCCCCATTCCATTCCGTTCGTA
1 GTTCATTCCGGGT--ACAAATAGAAGAAA--CCCCATTCCATTCCGTTCGTA
*
139552 GCTCATTCCGGGTA
1 GTTCATTCCGGGTA
139566 GGTGGTTCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
45 12 0.22
48 8 0.15
49 2 0.04
50 1 0.02
52 31 0.57
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
GTTCATTCCGGGTACAAATAGAAGAAACCCCATTCCATTCCGTTCGTA
Left flanking sequence: Indices 138955 -- 139454
CTCTCTTCTTCCATTCCCCAATCGATTGGGGCCGCTAACTCTCTCTCTCTCTCTCATTCCCTGCC
TCTCAGCATCGCCCCATCGCCCAGCCTTCGAAGAATTCACACAGAGGCCTTGTTCCGGGAGCAAG
AATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAACCCAAACATCGCCTACAAGGCCGA
AAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAGTTTTGGTTCCACCAGCGCCAATT
GATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGCAGTTTCAGGACCAGTGCTGCAGC
AGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTCCGGGTCAACAGAACGTGTCGGGT
CAACAGAACATGTCGGGTCAACAAATGGAATGGATGCCGTCGAATCAACGTCCCCATTCCGTGTT
CAGTCCGGGTAGTTCCAGGTGGTTCCGGGTACTTCATTCCGGGTG
Right flanking sequence: Indices 139566 -- 140065
GGTGGTTCATTCCGGGTAGTTCATTCCTGGTAGTTCCAAGTACTTCATTCCGGATCAACAGAACG
TGCAACAGAACGTATCAGGTCAACCCCATTTGGGAAAGCTAAAGCGAAAGCCTGGAAGAATGGAA
TCTGCATCATTTGCTCGATCCAAAGCCAGAGCGAAAGCCTGCTCCCCCAGCTCGGACTAGAAGGC
TGCTGGGTATGGTGAAACTTCAGTAAGAGATCATCGACCTAAAGGCCCCTCTCCCTTCGTGGTAG
GTACCGAGCCTCACCAAATGCTGCTAGCGGCAAGTCCCTCTCCCTTCGTCAGGGTACAGCGCGTT
AACCCACTTTTAAGGCTGCCCCGTCCCCCGGGAAAGGATTAAGGTTCTTCCAGTGCGCGTAGCCA
ATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTACCAATGATCCCAAGTAGGCTCTGTATTTC
AAGCCTTAAATACCAGGTCCAAAATAACACCAAATCTGGGTGTAA
Found at i:139589 original size:14 final size:14
Alignment explanation
Indices: 139570--139601 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
139560 CGGGTAGGTG
139570 GTTCATTCCGGGTA
1 GTTCATTCCGGGTA
*
139584 GTTCATTCCTGGTA
1 GTTCATTCCGGGTA
139598 GTTC
1 GTTC
139602 CAAGTACTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.12, C:0.22, G:0.25, T:0.41
Consensus pattern (14 bp):
GTTCATTCCGGGTA
Left flanking sequence: Indices 139070 -- 139569
TGTTCCGGGAGCAAGAATCGATGATGGCGGGCCTGCCTTTATGCGGCACTTCACAACCCAAACAT
CGCCTACAAGGCCGAAAGCAGGAGCTGTAGCAATTCCAACAGTTCCGGCACCAACAGTTTTGGTT
CCACCAGCGCCAATTGATTCCGTGCCAGGAGCCCCAGTTAGTCCCGGCAGCAGAAGCAGTTTCAG
GACCAGTGCTGCAGCAGAGCAGAGCATTCATTCCGACAGTCCGTTCGTGGTTCATTCCGGGTCAA
CAGAACGTGTCGGGTCAACAGAACATGTCGGGTCAACAAATGGAATGGATGCCGTCGAATCAACG
TCCCCATTCCGTGTTCAGTCCGGGTAGTTCCAGGTGGTTCCGGGTACTTCATTCCGGGTGGTTCA
TTCCGGGTCAAATAGAACAACCCATTCCATTCCGTTCGTAGTTCATTTCGGGTAAACAAATGGAA
GAAAGTCCCCATTCCATTCCGTTCGTAGCTCATTCCGGGTAGGTG
Right flanking sequence: Indices 139602 -- 140101
CAAGTACTTCATTCCGGATCAACAGAACGTGCAACAGAACGTATCAGGTCAACCCCATTTGGGAA
AGCTAAAGCGAAAGCCTGGAAGAATGGAATCTGCATCATTTGCTCGATCCAAAGCCAGAGCGAAA
GCCTGCTCCCCCAGCTCGGACTAGAAGGCTGCTGGGTATGGTGAAACTTCAGTAAGAGATCATCG
ACCTAAAGGCCCCTCTCCCTTCGTGGTAGGTACCGAGCCTCACCAAATGCTGCTAGCGGCAAGTC
CCTCTCCCTTCGTCAGGGTACAGCGCGTTAACCCACTTTTAAGGCTGCCCCGTCCCCCGGGAAAG
GATTAAGGTTCTTCCAGTGCGCGTAGCCAATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTA
CCAATGATCCCAAGTAGGCTCTGTATTTCAAGCCTTAAATACCAGGTCCAAAATAACACCAAATC
TGGGTGTAACATAACGCTTGAAATACGGAGCCTACTTTTTGAAAA
Found at i:140412 original size:22 final size:22
Alignment explanation
Indices: 140382--140475 Score: 75
Period size: 22 Copynumber: 4.1 Consensus size: 22
140372 CGGGAAGGAA
140382 GAGG-CTTTCGCTCTCTCTCTG
1 GAGGTCTTTCGCTCTCTCTCTG
****
140403 GAGGTCTTTCGCTCTGGAAGCT-
1 GAGGTCTTTCGCTCT-CTCTCTG
* *
140425 GAAGTCTTTTGCTCTCTCTCTGGG
1 GAGGTCTTTCGCTCTCTCTCT--G
140449 AGAGGATCTTTCGCTCTCTCTCTG
1 -GAGG-TCTTTCGCTCTCTCTCTG
140473 GAG
1 GAG
140476 AGAAGAAGTT
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
21 6 0.11
22 23 0.43
23 5 0.09
24 1 0.02
25 3 0.06
26 16 0.30
ACGTcount: A:0.11, C:0.27, G:0.27, T:0.36
Consensus pattern (22 bp):
GAGGTCTTTCGCTCTCTCTCTG
Left flanking sequence: Indices 139882 -- 140381
CAGCGCGTTAACCCACTTTTAAGGCTGCCCCGTCCCCCGGGAAAGGATTAAGGTTCTTCCAGTGC
GCGTAGCCAATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTACCAATGATCCCAAGTAGGCT
CTGTATTTCAAGCCTTAAATACCAGGTCCAAAATAACACCAAATCTGGGTGTAACATAACGCTTG
AAATACGGAGCCTACTTTTTGAAAAAGAAAAGAACCGACGAAAATTCATTGAATTTACTTTAATT
AATTTTCAATTAAATTAAATTAAAGTAATTTAATTGAAAATTAATTTCAATACTTTTTTAAAGAA
AGAAAGAAAGAAAGGAATTTGAAGCTTAAATTAATTTAAAATCAGAGTACCACACCATTTAAAAG
CCTTTTAAAAGGGCTAGTTGCTAAGGAAAAACGGCTAGCCCTTATAGGTGTTAGAAGGGGCGCCA
AGAAAGCAGGCTTTCTCTCTCTTTCGCTCTCTCTCCGGGAAGGAA
Right flanking sequence: Indices 140476 -- 140975
AGAAGAAGTTCTCGCTCTCTTGTGTTGATCGGGGCCGATCGGATTGCGGATTTGAGTAAATGATG
CAGATTCCAGTTCCGCTGGAGTTCCGCGGAATCCGAATTGATTCAATGAAATCCGCTTAGGAATT
GAGTCAATAGAGATTCAATGAAAATTAGAGATTCAATGAAGCTTCTCTCCCCATCGCTCCCCCCA
ATCGATTGGGACGATTGGGTACTTGTTCGGTCGAGGTATGGGCCCCTAACTGCACGGGAGTCACT
TCTCGTCGGATTCTGGGGGTATCTCGTAGCTGCTCCGACAACAGCATCCACTGAACAGGGATACC
CCATCGACTGATTGGGATCATCCCGCCCCCGCCTTGATCGGGGAATGGAAGATCCCGTCCCCCCA
ATCGATTGGGGAAGGAAGAAGCTCGGCCGAGTAGGCTTGCTCCACCTCATGATTGCGGTATGTGC
TCGAACAAGTTAGCTTGGTTACGTGTTCGAATGTGTTTCCCCGAC
Found at i:140490 original size:28 final size:26
Alignment explanation
Indices: 140430--140495 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
140420 AAGCTGAAGT
* * *
140430 CTTTTGCTCTCTCTCTGGGAGAGGAT
1 CTTTCGCTCTCTCTCTGGGAGAAGAA
140456 CTTTCGCTCTCTCTCTGGAGAGAAGAA
1 CTTTCGCTCTCTCTCTGG-GAGAAGAA
*
140483 GTTCTCGCTCTCT
1 CTT-TCGCTCTCT
140496 TGTGTTGATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 17 0.50
27 8 0.24
28 9 0.26
ACGTcount: A:0.14, C:0.27, G:0.23, T:0.36
Consensus pattern (26 bp):
CTTTCGCTCTCTCTCTGGGAGAAGAA
Left flanking sequence: Indices 139930 -- 140429
TAAGGTTCTTCCAGTGCGCGTAGCCAATCACTAATTGCTTCGAGCAAAATGATTGAAAGCTACCA
ATGATCCCAAGTAGGCTCTGTATTTCAAGCCTTAAATACCAGGTCCAAAATAACACCAAATCTGG
GTGTAACATAACGCTTGAAATACGGAGCCTACTTTTTGAAAAAGAAAAGAACCGACGAAAATTCA
TTGAATTTACTTTAATTAATTTTCAATTAAATTAAATTAAAGTAATTTAATTGAAAATTAATTTC
AATACTTTTTTAAAGAAAGAAAGAAAGAAAGGAATTTGAAGCTTAAATTAATTTAAAATCAGAGT
ACCACACCATTTAAAAGCCTTTTAAAAGGGCTAGTTGCTAAGGAAAAACGGCTAGCCCTTATAGG
TGTTAGAAGGGGCGCCAAGAAAGCAGGCTTTCTCTCTCTTTCGCTCTCTCTCCGGGAAGGAAGAG
GCTTTCGCTCTCTCTCTGGAGGTCTTTCGCTCTGGAAGCTGAAGT
Right flanking sequence: Indices 140496 -- 140995
TGTGTTGATCGGGGCCGATCGGATTGCGGATTTGAGTAAATGATGCAGATTCCAGTTCCGCTGGA
GTTCCGCGGAATCCGAATTGATTCAATGAAATCCGCTTAGGAATTGAGTCAATAGAGATTCAATG
AAAATTAGAGATTCAATGAAGCTTCTCTCCCCATCGCTCCCCCCAATCGATTGGGACGATTGGGT
ACTTGTTCGGTCGAGGTATGGGCCCCTAACTGCACGGGAGTCACTTCTCGTCGGATTCTGGGGGT
ATCTCGTAGCTGCTCCGACAACAGCATCCACTGAACAGGGATACCCCATCGACTGATTGGGATCA
TCCCGCCCCCGCCTTGATCGGGGAATGGAAGATCCCGTCCCCCCAATCGATTGGGGAAGGAAGAA
GCTCGGCCGAGTAGGCTTGCTCCACCTCATGATTGCGGTATGTGCTCGAACAAGTTAGCTTGGTT
ACGTGTTCGAATGTGTTTCCCCGACTGGGCGGGAGTCCTTTGCCT
Found at i:141205 original size:25 final size:25
Alignment explanation
Indices: 141170--141224 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
141160 TTTCCGCTCC
*
141170 CTCTCTCGAAGATGGGAAGCTCTCT
1 CTCTCTCGAAGAAGGGAAGCTCTCT
*
141195 CTCTCTGGAAGAAGGGAAGCTCTCT
1 CTCTCTCGAAGAAGGGAAGCTCTCT
141220 CTCTC
1 CTCTC
141225 GGGCGGGCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (25 bp):
CTCTCTCGAAGAAGGGAAGCTCTCT
Left flanking sequence: Indices 140670 -- 141169
AATCGATTGGGACGATTGGGTACTTGTTCGGTCGAGGTATGGGCCCCTAACTGCACGGGAGTCAC
TTCTCGTCGGATTCTGGGGGTATCTCGTAGCTGCTCCGACAACAGCATCCACTGAACAGGGATAC
CCCATCGACTGATTGGGATCATCCCGCCCCCGCCTTGATCGGGGAATGGAAGATCCCGTCCCCCC
AATCGATTGGGGAAGGAAGAAGCTCGGCCGAGTAGGCTTGCTCCACCTCATGATTGCGGTATGTG
CTCGAACAAGTTAGCTTGGTTACGTGTTCGAATGTGTTTCCCCGACTGGGCGGGAGTCCTTTGCC
TAGATGCATGGGAGCCACTTCTTGCTCGGACTTTGGGGGCACCTCGCCGAACACCAATGACCAAG
AGCACCGTAAAGTGCAAAACCCTTAGATACCGCATGACTGAAGTGGGTTGGTAAGCGAAAAGGCC
TTGCCCTGCCTTAGCTTTAGAGTTTAGAGTCTCTCTTTCCGCTCC
Right flanking sequence: Indices 141225 -- 141724
GGGCGGGCGGGTGGAACCCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAA
CTCTCTCTTGCTCTCTCTCTCTCCCAAGCACTCTCTCGGGTGGAAGACACTCTCTTTTGCTCTCT
CTCTCCCCGCTCTCGGGCGGGAACAAACTCTGGAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGG
GAATAAATTCTGGGGGGTGGAAGAATGGATTCCCCAATCGATTGGGCCGAGCTCGAATCGATTGG
GCGGAGTTTCCGTCTCTCTCTCGGAGTTTCCGTCTCTCTCTCTCGGTTCGGGGGTGGAAGAATGG
ATTCCCCTTCCCTTCCGTTCTGGGTTCGGAGTTTTCCGTTCTGGGTTCGGAGTTTTCCGTTCCAG
GTTCAGAGTTTCCGTCTCTCTCTCTCCGTCCGAAGCTCTCTCTCTCCCTCTCGGGCGTTAAATTA
AATTCAATTAATTTTAAAGCTCTCTCTGGTTTTTTCTTTTGCAGG
Found at i:141511 original size:20 final size:20
Alignment explanation
Indices: 141486--141526 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
141476 ATCGATTGGG
141486 CGGAGTTTCCGTCTCTCTCT
1 CGGAGTTTCCGTCTCTCTCT
141506 CGGAGTTTCCGTCTCTCTCT
1 CGGAGTTTCCGTCTCTCTCT
141526 C
1 C
141527 TCGGTTCGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.05, C:0.37, G:0.20, T:0.39
Consensus pattern (20 bp):
CGGAGTTTCCGTCTCTCTCT
Left flanking sequence: Indices 140986 -- 141485
TCCTTTGCCTAGATGCATGGGAGCCACTTCTTGCTCGGACTTTGGGGGCACCTCGCCGAACACCA
ATGACCAAGAGCACCGTAAAGTGCAAAACCCTTAGATACCGCATGACTGAAGTGGGTTGGTAAGC
GAAAAGGCCTTGCCCTGCCTTAGCTTTAGAGTTTAGAGTCTCTCTTTCCGCTCCCTCTCTCGAAG
ATGGGAAGCTCTCTCTCTCTGGAAGAAGGGAAGCTCTCTCTCTCGGGCGGGCGGGTGGAACCCCT
TACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAACTCTCTCTTGCTCTCTCTCTC
TCCCAAGCACTCTCTCGGGTGGAAGACACTCTCTTTTGCTCTCTCTCTCCCCGCTCTCGGGCGGG
AACAAACTCTGGAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGGGAATAAATTCTGGGGGGTGGA
AGAATGGATTCCCCAATCGATTGGGCCGAGCTCGAATCGATTGGG
Right flanking sequence: Indices 141527 -- 142026
TCGGTTCGGGGGTGGAAGAATGGATTCCCCTTCCCTTCCGTTCTGGGTTCGGAGTTTTCCGTTCT
GGGTTCGGAGTTTTCCGTTCCAGGTTCAGAGTTTCCGTCTCTCTCTCTCCGTCCGAAGCTCTCTC
TCTCCCTCTCGGGCGTTAAATTAAATTCAATTAATTTTAAAGCTCTCTCTGGTTTTTTCTTTTGC
AGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGAAGGGTCCGAAC
GAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTTGGGATAAATTTCAAATTCTTGG
ATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCGCCGGGAC
Found at i:141588 original size:21 final size:21
Alignment explanation
Indices: 141562--141629 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
141552 TCCCCTTCCC
141562 TTCCGTTCTGGGTTCGGAGTT
1 TTCCGTTCTGGGTTCGGAGTT
141583 TTCCGTTCTGGGTTCGGAGTT
1 TTCCGTTCTGGGTTCGGAGTT
** *
141604 TTCCGTTCCAGGTTCAGAG-T
1 TTCCGTTCTGGGTTCGGAGTT
141624 TTCCGT
1 TTCCGT
141630 CTCTCTCTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 7 0.16
21 37 0.84
ACGTcount: A:0.07, C:0.22, G:0.29, T:0.41
Consensus pattern (21 bp):
TTCCGTTCTGGGTTCGGAGTT
Left flanking sequence: Indices 141062 -- 141561
CACCGTAAAGTGCAAAACCCTTAGATACCGCATGACTGAAGTGGGTTGGTAAGCGAAAAGGCCTT
GCCCTGCCTTAGCTTTAGAGTTTAGAGTCTCTCTTTCCGCTCCCTCTCTCGAAGATGGGAAGCTC
TCTCTCTCTGGAAGAAGGGAAGCTCTCTCTCTCGGGCGGGCGGGTGGAACCCCTTACCCCCTATC
GGGGGTAAGTGGCTCGCTATCGCTCGCCCGAAACTCTCTCTTGCTCTCTCTCTCTCCCAAGCACT
CTCTCGGGTGGAAGACACTCTCTTTTGCTCTCTCTCTCCCCGCTCTCGGGCGGGAACAAACTCTG
GAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGGGAATAAATTCTGGGGGGTGGAAGAATGGATTC
CCCAATCGATTGGGCCGAGCTCGAATCGATTGGGCGGAGTTTCCGTCTCTCTCTCGGAGTTTCCG
TCTCTCTCTCTCGGTTCGGGGGTGGAAGAATGGATTCCCCTTCCC
Right flanking sequence: Indices 141630 -- 142129
CTCTCTCTCTCCGTCCGAAGCTCTCTCTCTCCCTCTCGGGCGTTAAATTAAATTCAATTAATTTT
AAAGCTCTCTCTGGTTTTTTCTTTTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGT
CCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTC
CGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGAA
GGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAG
GAGTTGGGATAAATTTCAAATTCTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCG
CCGGGACCGGAGGTGGGGTGAGTGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGACGAACGA
ACCCCACCGACCGGTCCCTACCATGACGCGAATGCTAAGAAGGTA
Found at i:141867 original size:9 final size:9
Alignment explanation
Indices: 141855--141883 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
141845 CCGACCGAAG
141855 GGAGGAGTT
1 GGAGGAGTT
141864 GGAGGAGTT
1 GGAGGAGTT
141873 GGAGGAGTT
1 GGAGGAGTT
141882 GG
1 GG
141884 TCCGAAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 141355 -- 141854
CTCTCCCCGCTCTCGGGCGGGAACAAACTCTGGAAAGCTCTCTTTCCGCTCTCTCTCTCGGGCGG
GAATAAATTCTGGGGGGTGGAAGAATGGATTCCCCAATCGATTGGGCCGAGCTCGAATCGATTGG
GCGGAGTTTCCGTCTCTCTCTCGGAGTTTCCGTCTCTCTCTCTCGGTTCGGGGGTGGAAGAATGG
ATTCCCCTTCCCTTCCGTTCTGGGTTCGGAGTTTTCCGTTCTGGGTTCGGAGTTTTCCGTTCCAG
GTTCAGAGTTTCCGTCTCTCTCTCTCCGTCCGAAGCTCTCTCTCTCCCTCTCGGGCGTTAAATTA
AATTCAATTAATTTTAAAGCTCTCTCTGGTTTTTTCTTTTGCAGGGCCCTCCGAAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 141884 -- 142383
TCCGAAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TGGGAGGAGTTGGGATAAATTTCAAATTCTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCT
GGCCCGCCGGGACCGGAGGTGGGGTGAGTGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGAC
GAACGAACCCCACCGACCGGTCCCTACCATGACGCGAATGCTAAGAAGGTATCCAGGAACTTACT
CACTTGACAGAGTGTTCCCTCTCACAGAAGGGGTCTATTGTACAAGTTGTGTTTTATTGGTTCGG
GGAAGATTTCAGAGAAGGGAAGGTAGGGTTTCGGGGAGGGTTTCAGAGAAGGGGAGGTAGAGGTT
CGGGGAGGGTTTCAGGGAGGGGGCCACGCAGAGGCCATTTTCCAGGGCGGGCAAAAATCGCTGGA
CACCCTCCCCCCCCGTCCCACGGCCCGCCATCATCGATTCTTGCT
Found at i:142253 original size:34 final size:34
Alignment explanation
Indices: 142202--142288 Score: 131
Period size: 34 Copynumber: 2.6 Consensus size: 34
142192 GTGTTTTATT
* *
142202 GGTTCGGGGAAGATTTCAGAGAAGGGAAGGTAG-
1 GGTTCGGGGAGGGTTTCAGAGAAGGGAAGGTAGA
*
142235 GGTTTCGGGGAGGGTTTCAGAGAAGGGGAGGTAGA
1 GG-TTCGGGGAGGGTTTCAGAGAAGGGAAGGTAGA
142270 GGTTCGGGGAGGGTTTCAG
1 GGTTCGGGGAGGGTTTCAG
142289 GGAGGGGGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
33 2 0.04
34 45 0.92
35 2 0.04
ACGTcount: A:0.23, C:0.07, G:0.49, T:0.21
Consensus pattern (34 bp):
GGTTCGGGGAGGGTTTCAGAGAAGGGAAGGTAGA
Left flanking sequence: Indices 141702 -- 142201
TCTCTGGTTTTTTCTTTTGCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACG
AAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGA
AGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGAAGGACCAC
TCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTTGG
GATAAATTTCAAATTCTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCGCCGGGAC
CGGAGGTGGGGTGAGTGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGACGAACGAACCCCAC
CGACCGGTCCCTACCATGACGCGAATGCTAAGAAGGTATCCAGGAACTTACTCACTTGACAGAGT
GTTCCCTCTCACAGAAGGGGTCTATTGTACAAGTTGTGTTTTATT
Right flanking sequence: Indices 142289 -- 142788
GGAGGGGGCCACGCAGAGGCCATTTTCCAGGGCGGGCAAAAATCGCTGGACACCCTCCCCCCCCG
TCCCACGGCCCGCCATCATCGATTCTTGCTCCCGGAACAAGGCCTCTGTGTGCTTCGAAGGCTGG
GCGATGGGTCTCTTCCCTTCCCGCCGGGAGAGTGAAAGGGAAAGGAACTCTCTTCCCTAGCTAGG
GAGAAAGAGCTAGGGAGAAAGCTTCCCTCTCTTCCCCAGAGAGAGGGAAAGGATTTATCGTCTTA
TCGTCTGATTATCCGAGTTATCGTCTTATCGTCTGATTGTCTGAAAGCGTAGGTCTTATCGTCTT
ATCGTCTGATCTATCGGAAAGAATCTCTCTCTTCCGGGGAGAAAGAACTGGGAGAATCTCTTCCG
GGTTCAATCCCCCGGGCTGGGAGAATCTCTTCCGGGTTCTTCGGCGATAACCTACCTTCACGATA
GATCTCTCGTGCAAGGTGTCCATCGTTGATTCTTTCTCCCGCTGG
Found at i:142496 original size:14 final size:14
Alignment explanation
Indices: 142477--142504 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
142467 TCTCTTCCCT
142477 AGCTAGGGAGAAAG
1 AGCTAGGGAGAAAG
142491 AGCTAGGGAGAAAG
1 AGCTAGGGAGAAAG
142505 CTTCCCTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.43, T:0.07
Consensus pattern (14 bp):
AGCTAGGGAGAAAG
Left flanking sequence: Indices 141977 -- 142476
CTTGGATTTCTCCCAGACCCCCTTCCCGCGCTGCCCTGGCCCGCCGGGACCGGAGGTGGGGTGAG
TGAGGAAAGAGTGAGGAGGTAACGACGAACGACTGACGAACGAACCCCACCGACCGGTCCCTACC
ATGACGCGAATGCTAAGAAGGTATCCAGGAACTTACTCACTTGACAGAGTGTTCCCTCTCACAGA
AGGGGTCTATTGTACAAGTTGTGTTTTATTGGTTCGGGGAAGATTTCAGAGAAGGGAAGGTAGGG
TTTCGGGGAGGGTTTCAGAGAAGGGGAGGTAGAGGTTCGGGGAGGGTTTCAGGGAGGGGGCCACG
CAGAGGCCATTTTCCAGGGCGGGCAAAAATCGCTGGACACCCTCCCCCCCCGTCCCACGGCCCGC
CATCATCGATTCTTGCTCCCGGAACAAGGCCTCTGTGTGCTTCGAAGGCTGGGCGATGGGTCTCT
TCCCTTCCCGCCGGGAGAGTGAAAGGGAAAGGAACTCTCTTCCCT
Right flanking sequence: Indices 142505 -- 143004
CTTCCCTCTCTTCCCCAGAGAGAGGGAAAGGATTTATCGTCTTATCGTCTGATTATCCGAGTTAT
CGTCTTATCGTCTGATTGTCTGAAAGCGTAGGTCTTATCGTCTTATCGTCTGATCTATCGGAAAG
AATCTCTCTCTTCCGGGGAGAAAGAACTGGGAGAATCTCTTCCGGGTTCAATCCCCCGGGCTGGG
AGAATCTCTTCCGGGTTCTTCGGCGATAACCTACCTTCACGATAGATCTCTCGTGCAAGGTGTCC
ATCGTTGATTCTTTCTCCCGCTGGTTCAACTGCTTCTGAAGGACCGAAGCTGCTTCTGATGGTGG
CCTTGGAACTGCTGGTGGTGGGACTGGAACTTAGGCTGATAGCGCTGGGACTGCTTCTGCTGGTG
CTTAGGAACTGATTCAACGTCGACTGATAGCACTGCTGCTGGTGGCAACTGGAACCGCTGCTGAG
GGCACTGGAACAACGGCTACTGAAACTGGCACTGGGACTAAAGAA
Found at i:142968 original size:21 final size:22
Alignment explanation
Indices: 142929--142970 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
142919 TGATAGCACT
142929 GCTGCTGGTGGCAACTGGAACC
1 GCTGCTGGTGGCAACTGGAACC
142951 GCTGCTGAG-GGC-ACTGGAAC
1 GCTGCTG-GTGGCAACTGGAAC
142971 AACGGCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 10 0.53
23 1 0.05
ACGTcount: A:0.19, C:0.26, G:0.38, T:0.17
Consensus pattern (22 bp):
GCTGCTGGTGGCAACTGGAACC
Left flanking sequence: Indices 142429 -- 142928
TCTTCCCTTCCCGCCGGGAGAGTGAAAGGGAAAGGAACTCTCTTCCCTAGCTAGGGAGAAAGAGC
TAGGGAGAAAGCTTCCCTCTCTTCCCCAGAGAGAGGGAAAGGATTTATCGTCTTATCGTCTGATT
ATCCGAGTTATCGTCTTATCGTCTGATTGTCTGAAAGCGTAGGTCTTATCGTCTTATCGTCTGAT
CTATCGGAAAGAATCTCTCTCTTCCGGGGAGAAAGAACTGGGAGAATCTCTTCCGGGTTCAATCC
CCCGGGCTGGGAGAATCTCTTCCGGGTTCTTCGGCGATAACCTACCTTCACGATAGATCTCTCGT
GCAAGGTGTCCATCGTTGATTCTTTCTCCCGCTGGTTCAACTGCTTCTGAAGGACCGAAGCTGCT
TCTGATGGTGGCCTTGGAACTGCTGGTGGTGGGACTGGAACTTAGGCTGATAGCGCTGGGACTGC
TTCTGCTGGTGCTTAGGAACTGATTCAACGTCGACTGATAGCACT
Right flanking sequence: Indices 142971 -- 143470
AACGGCTACTGAAACTGGCACTGGGACTAAAGAAGCTGATGGCACTGGCACAGAAGCTGCTGTTG
CTGGTGGCGTTGAAGCGGCAAGCTGAGGCAGTTAGTAGGTCTCCTACTCTCCCCTTCACCGATCG
TTCACAAGCCTGTAAGGCTCATCTGGAGGTCTCTCCGTTAATGCTTGGGTTGAAAGGGAAAGGGA
AGGCACTGCAGGGAAGGGGGAGAAGCGGGAAGGTTTGGATTGGTGGAAGGGCCAACAAAGGCGAA
GCCTATCCATCCTGACCTGTGCCTCTTTGCCTCACCATCTTCACCACCATGTCAATCCCATCTTC
GATGAAAGCGGTGTGTAGGTTAGGTTTTGGCATCCATCGAGGCAAGCAGGAAAGATGAGGGACTG
AAGGAAAAAGGACTTAGGCGGGTGTAACATATTTTTGGGGGGGTTATTCCGGAACCCCCTCTCTC
ATTCGAGAAGACCATGCTTTGTTGAATTAGGGCTGGCTGAGGTGC
Found at i:143713 original size:9 final size:9
Alignment explanation
Indices: 143701--143745 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
143691 TCCGACCGAA
143701 GGGAGGAGT
1 GGGAGGAGT
143710 GGGAGGAGT
1 GGGAGGAGT
*
143719 GGGGGGAGT
1 GGGAGGAGT
*
143728 GGGGGGAGT
1 GGGAGGAGT
143737 GGGAGGAGT
1 GGGAGGAGT
143746 TGGTCCTCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.18, C:0.00, G:0.71, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 143201 -- 143700
TGGATTGGTGGAAGGGCCAACAAAGGCGAAGCCTATCCATCCTGACCTGTGCCTCTTTGCCTCAC
CATCTTCACCACCATGTCAATCCCATCTTCGATGAAAGCGGTGTGTAGGTTAGGTTTTGGCATCC
ATCGAGGCAAGCAGGAAAGATGAGGGACTGAAGGAAAAAGGACTTAGGCGGGTGTAACATATTTT
TGGGGGGGTTATTCCGGAACCCCCTCTCTCATTCGAGAAGACCATGCTTTGTTGAATTAGGGCTG
GCTGAGGTGCCAATCGGAGGCTTTTTTCTTGCCAAAACGAGCGTTTTGGAAAGAAAAAAGGTTGG
GCGTTTAAATGACTTTAAAGTCGCTTCCCGGCCTTTTTGCGCAAATTCTCAAAAAGGGGATTCAG
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 143746 -- 144245
TGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCGATAGGACAACTC
CGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCC
GACCGAAGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGGGTAATTTGCT
TGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGG
GGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTGAATTTTCAA
TGAAATTAAAGTGACTTTAAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATCAT
TAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGAAATTAAATTAAAGTAAC
CTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCTACC
Found at i:144178 original size:35 final size:35
Alignment explanation
Indices: 144134--144202 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
144124 GCGGTTAATC
144134 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
144169 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
144203 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 143634 -- 144133
GGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGGGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGG
ACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCGATAGGACAACTCCGACCCTCTCCCTATCGG
TCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGGGG
AGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGGGTAATTTGCTTGAATTTAAGCGCTCCAA
CTCCTCCCTCTCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGC
GGGGGGCGCGTAGCGCCCCCCTGCCCTTAAAAGAACTGAATTTTCAATGAAATTAAAGTGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 144203 -- 144702
CAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACC
GGGAGGAGTTGGTTTTGTTGGCCTTTAGGCCACCCGGGGCGCGTTAGCGCTGACAACCAACTCCT
CCCTGTCGGTCGGAGTTGCCCTTCGGGCCCTGGGTTCCCTGCCTACGGCATTCGTCACCAACCGA
CTTGCGGGAACAACTTACTATCTTTCCTTGAAAACCACGGCGAGAATGCTCCCGAATAGCGTTCA
GTGCTTCTAACTGAATCTCTATTTGTTGGCATGGCACAGCTTGCACCGTTCGTTCGCACAACGGT
GAGCGCTCCGCCGTCTCATTCGGACATGATTCTCCAATCATTTGCGTACCTGAGCGCAAGCTGAG
TAATGGGGATTCATGCTGTTCCTTGAACTCAGACCACAGAGCTTCTTGAGAACCAGGAGTATGCT
GTAGATCTGTTTGAATGCCTCCGGCCCTCGCCTCAGAAGTCGCTC
Found at i:144252 original size:22 final size:22
Alignment explanation
Indices: 144226--144274 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
144216 CGAGCGAAGC
144226 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
144248 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
144270 GAGGA
1 GAGGA
144275 GTTGGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.31, T:0.08
Consensus pattern (22 bp):
GAGGACAACTCCGACCTACCGG
Left flanking sequence: Indices 143726 -- 144225
GTGGGGGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAG
TGGGTCCGATAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
AACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCG
CGAAAACCGGGTAATTTGCTTGAATTTAAGCGCTCCAACTCCTCCCTCTCGGAATTCGGAGTTGC
CCTCCTATCGGAGGGCAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCT
TAAAAGAACTGAATTTTCAATGAAATTAAAGTGACTTTAAAGCGGTCTTTAGACACTCGACCGAA
GGGAGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAA
GGAAATTAAATTAAAGTAACCTCAGCGGCCGGGTCCGAGCGAAGC
Right flanking sequence: Indices 144275 -- 144774
GTTGGTTTTGTTGGCCTTTAGGCCACCCGGGGCGCGTTAGCGCTGACAACCAACTCCTCCCTGTC
GGTCGGAGTTGCCCTTCGGGCCCTGGGTTCCCTGCCTACGGCATTCGTCACCAACCGACTTGCGG
GAACAACTTACTATCTTTCCTTGAAAACCACGGCGAGAATGCTCCCGAATAGCGTTCAGTGCTTC
TAACTGAATCTCTATTTGTTGGCATGGCACAGCTTGCACCGTTCGTTCGCACAACGGTGAGCGCT
CCGCCGTCTCATTCGGACATGATTCTCCAATCATTTGCGTACCTGAGCGCAAGCTGAGTAATGGG
GATTCATGCTGTTCCTTGAACTCAGACCACAGAGCTTCTTGAGAACCAGGAGTATGCTGTAGATC
TGTTTGAATGCCTCCGGCCCTCGCCTCAGAAGTCGCTCTGATAGTGTCACCAAGAGTCTTTTGAC
TAGAGGGAACAAAACCTACCAAACAAACAGCTACTAGTATTTCTT
Found at i:145635 original size:48 final size:48
Alignment explanation
Indices: 145580--145674 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
145570 GGTCCCCACA
*
145580 AGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGC
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGC
*
145628 AGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGG
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGG
145675 GGGCGCTACT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.28, C:0.21, G:0.41, T:0.09
Consensus pattern (48 bp):
AGGGTCCGAACGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGC
Left flanking sequence: Indices 145080 -- 145579
AAGAATTGAGGGAGCCAGTCAAAGGCTACTGGAACACCAGATACGAAGACTACCCAAGCTAATGA
TAAAGGCAAGAAGACTTTCCGGCCGAGTCTCATTGGTTAATCATAACGATATCGTGAAAATGCTG
CACAAACCCATATATGTACGAACGGAAAGAAAGGAACCTTAATACTGAACCGGATTGAGCCCGGA
ATCGCCTGTAGAAGAGGAAAATCTAAGATAGGCAGCCAACCCCCTGGAGAAAGCAATGTGCATAG
ACTAGGAGAGTAAGGGCGCAGCTCCTTAAAGGCCCTGCCGCCCTTATTAGGTGTATCCACACCCT
TCTCAAAGAACCGTACGTGACACTCTCGCGTCATACGGCTCCGTCCCGGATTGAGTCTCCTCCCC
TCTAACCAACGCAACGTCTAGGTCTTCGAACCTGAGGGAAAACGCTAGGCGCAGCCGCGTTTTCA
CTTGTGGGTGACCCATACCATACCCTTGAGAAGGGGGTCCCCACA
Right flanking sequence: Indices 145675 -- 146174
GGGCGCTACTTTAAACCCCCGGGGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGG
AGTTGTCCTCACTTCGTTCGGACCCGGTAGGTCAGAGTTGTCCTCGCCTCGGACCCGCCCTCCGG
ACCAACTCCTCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGG
GCCCTACAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGGAAACGCAAGTAAGCAGGTGGTTC
TTCCCGGCCCTGCCGGGAAGCCGGCCTTTCTCGCATGAATGTCTCGGTAGTTTTCCCTGCCCAAA
AGTGCGAAGGGGAGCGGGAGAAGAGGCCCGCCCCCCTAGCTCCCG
Found at i:145795 original size:31 final size:33
Alignment explanation
Indices: 145727--145796 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 33
145717 CCCCACTCCT
*
145727 CCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCAGAGTTGTCCTCAC-TCG-TCGGA
*
145762 CCCGGTAGGTCAGAGTTGTCCTCGC-C-TCGGA
1 CCCGGTAGGTCAGAGTTGTCCTCACTCGTCGGA
145793 CCCG
1 CCCG
145797 CCCTCCGGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 9 0.27
33 1 0.03
35 23 0.70
ACGTcount: A:0.11, C:0.33, G:0.31, T:0.24
Consensus pattern (33 bp):
CCCGGTAGGTCAGAGTTGTCCTCACTCGTCGGA
Left flanking sequence: Indices 145227 -- 145726
ACGAACGGAAAGAAAGGAACCTTAATACTGAACCGGATTGAGCCCGGAATCGCCTGTAGAAGAGG
AAAATCTAAGATAGGCAGCCAACCCCCTGGAGAAAGCAATGTGCATAGACTAGGAGAGTAAGGGC
GCAGCTCCTTAAAGGCCCTGCCGCCCTTATTAGGTGTATCCACACCCTTCTCAAAGAACCGTACG
TGACACTCTCGCGTCATACGGCTCCGTCCCGGATTGAGTCTCCTCCCCTCTAACCAACGCAACGT
CTAGGTCTTCGAACCTGAGGGAAAACGCTAGGCGCAGCCGCGTTTTCACTTGTGGGTGACCCATA
CCATACCCTTGAGAAGGGGGTCCCCACAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGG
GAGGAGTTGGCAGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGGCGCT
ACTTTAAACCCCCGGGGGCCGGCAAGGCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 145797 -- 146296
CCCTCCGGACCAACTCCTCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCC
TTCGGAGGGCCCTACAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGGAAACGCAAGTAAGCA
GGTGGTTCTTCCCGGCCCTGCCGGGAAGCCGGCCTTTCTCGCATGAATGTCTCGGTAGTTTTCCC
TGCCCAAAAGTGCGAAGGGGAGCGGGAGAAGAGGCCCGCCCCCCTAGCTCCCGGGGTTTCGAAGT
GGGGACCCGGGTTGTCCCTTAGGACAAGCGCCTAAGCGCTACTTCCGTAACAAAGGGTGGCCTTG
CCGGGCCAACGTCGCCCCGCCACCACCACCACCCATGAATGGGTG
Found at i:145820 original size:9 final size:9
Alignment explanation
Indices: 145806--145834 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
145796 GCCCTCCGGA
145806 CCAACTCCT
1 CCAACTCCT
145815 CCAACTCCT
1 CCAACTCCT
145824 CCAACTCCT
1 CCAACTCCT
145833 CC
1 CC
145835 CGGTAGGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 145306 -- 145805
GCAGCCAACCCCCTGGAGAAAGCAATGTGCATAGACTAGGAGAGTAAGGGCGCAGCTCCTTAAAG
GCCCTGCCGCCCTTATTAGGTGTATCCACACCCTTCTCAAAGAACCGTACGTGACACTCTCGCGT
CATACGGCTCCGTCCCGGATTGAGTCTCCTCCCCTCTAACCAACGCAACGTCTAGGTCTTCGAAC
CTGAGGGAAAACGCTAGGCGCAGCCGCGTTTTCACTTGTGGGTGACCCATACCATACCCTTGAGA
AGGGGGTCCCCACAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGCAGG
GTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGGCGCTACTTTAAACCCCCG
GGGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGG
ACCCGGTAGGTCAGAGTTGTCCTCGCCTCGGACCCGCCCTCCGGA
Right flanking sequence: Indices 145835 -- 146334
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACT
CCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACAGGGCAACTCCGAATTCCGATAG
GGAGGAGTTGGGAAACGCAAGTAAGCAGGTGGTTCTTCCCGGCCCTGCCGGGAAGCCGGCCTTTC
TCGCATGAATGTCTCGGTAGTTTTCCCTGCCCAAAAGTGCGAAGGGGAGCGGGAGAAGAGGCCCG
CCCCCCTAGCTCCCGGGGTTTCGAAGTGGGGACCCGGGTTGTCCCTTAGGACAAGCGCCTAAGCG
CTACTTCCGTAACAAAGGGTGGCCTTGCCGGGCCAACGTCGCCCCGCCACCACCACCACCCATGA
ATGGGTGGTTAGGGTCCTCCGACAGGAGGACAACTCCGACCGATA
Found at i:146495 original size:40 final size:40
Alignment explanation
Indices: 146451--146542 Score: 175
Period size: 40 Copynumber: 2.3 Consensus size: 40
146441 TTGGAGGAGT
146451 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
1 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
*
146491 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGATA
1 GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
146531 GGGAGGAGTTGG
1 GGGAGGAGTTGG
146543 GCGTTTAAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.24, C:0.20, G:0.38, T:0.18
Consensus pattern (40 bp):
GGGAGGAGTTGGTCCGATAGGACCACTCCGAATTCCGAGA
Left flanking sequence: Indices 145951 -- 146450
CCTTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACAGGGCAACT
CCGAATTCCGATAGGGAGGAGTTGGGAAACGCAAGTAAGCAGGTGGTTCTTCCCGGCCCTGCCGG
GAAGCCGGCCTTTCTCGCATGAATGTCTCGGTAGTTTTCCCTGCCCAAAAGTGCGAAGGGGAGCG
GGAGAAGAGGCCCGCCCCCCTAGCTCCCGGGGTTTCGAAGTGGGGACCCGGGTTGTCCCTTAGGA
CAAGCGCCTAAGCGCTACTTCCGTAACAAAGGGTGGCCTTGCCGGGCCAACGTCGCCCCGCCACC
ACCACCACCCATGAATGGGTGGTTAGGGTCCTCCGACAGGAGGACAACTCCGACCGATAGGGTCC
GAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCG
AACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGT
Right flanking sequence: Indices 146543 -- 147042
GCGTTTAAAGTGCTTTAGCCAACTCCTTTAAACCCCACCACCACCTACAAAGTGGGTGGGGTTTA
AAGGAGGTTGGGCTTCCGTCAGGAAGCCCGCAGGGGGCCCCCCATGCGGAGCGCGTAGCGCCAAC
TTTATGAAAACGTGAAAGAGTGGGAGCGTGAAAGCTCCCACGCTTTCACGCTCCCACTTCGGAAT
TATTGCGTAGCGTTTTCACTTCAGAAGTGCCCATCCCCTGATGCGGCCCCAAAAGGGGGGAAAGC
AGTGCGCTTCCCCCCGGCCCCCCGTATGAAAGACCGCGCCTATTGCGCTTCCCCTACCTTTGGGC
AGAGACCGCGCCTATCTAGATTTACAAGACGCGACGCGTTGGATGCGTTTTCCCCGGCTCCGTTG
CCTACTGGGGGATAGTTGAAGCTCGCTTCTTTTCCATCGTTTTCTTGGTCCTCTCGACCCCTGGC
TGGGGCCCCTACCCCAGCCAGTGGCTAAAGCCCGTCATCTCGAAT
Found at i:149354 original size:31 final size:31
Alignment explanation
Indices: 149319--149380 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
149309 CGGACCCTGG
*
149319 CAACTCCTCCCGGTAGGTCGGAGTTGTCCTC
1 CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
149350 CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
1 CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
149381 GCTTCGCTCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.13, C:0.35, G:0.27, T:0.24
Consensus pattern (31 bp):
CAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
Left flanking sequence: Indices 148819 -- 149318
ACAATGACGTGAGAGGGCATTTATGCGGGAAGCTACGCTTCCCATTTTTTGAGGAAGGGCGAAGC
GGATACGTAAAACGAAAGTTTCCACTTAAAAACATCTTGTACGTCAGACGGTTTAAAGGGCAGAG
CAGCCCCCCGTGAGGGGGGCTGCTCGCGGGTGGCCTAAAGGCCACCCTGCCGGGGGCCAGGTATG
GGGACGGGGCAGGGCAGGCCAGCCTGCCGGGCTGCCCGCTTAAAGGGGGCTGCTACGCGCCCCCC
TCTCCCTATCGGTCGAGTGGTTTGCTGGCGCCCCTGCCCTTTAAACGCCAACTCCCCTGGCTCGG
AATTATTTGTTGCCAACTCCTCCCTAGGAATTATTTGTTGTCTTCCAACTCCCCCCACTCCTCCA
ACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACC
GATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTGG
Right flanking sequence: Indices 149381 -- 149880
GCTTCGCTCGGACCCTACAGGTCGGACCAACTCCTCCCTTCGGGATTCGGAGTTGGCCCGGGTCC
GACTACCGGAGGACAACTCCGACCGAGGGGAGGAGTTGGCCCAACTCCTCCCTTCGGTCGGAGTT
GTCCTCGCCTCGGACCCTTGATGCCCATACCACCCCACTTTCTTTATAGATGGTGGTGGTATGGG
CATCAAAGGCGACAGTGGTTTAAAGGCCAACTTTGATCGTTTTCACTTCAGAAGTGCCCTTCCTT
AACGAAGGGGCGTTAGCGTAACCCCGAGTTCGGGTGGCAGGCCACCCTGCCCCATCCGGCGGGGG
TACCACATACCCGCGAAGCGCTACGCGCCCTAGAGCGTAGCGAAGGATTCTAAAAAGGGGCGGTC
AGTTCGGCCGCCCCCCATAACCGGCCCACGATGTTCCCACAGCAGGTGGTTCTTCCCTCAGGGAA
GCCGGCCTTCCCGCCTTTATTAGTCCTTATCCCCGCTCTTTCTGT
Found at i:150677 original size:46 final size:46
Alignment explanation
Indices: 150627--150772 Score: 213
Period size: 46 Copynumber: 3.4 Consensus size: 46
150617 ACAACTCCGA
150627 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
1 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
150673 CCGATAGGGAGGAGTTGG---TCCGA-AGGA---CAACTCCG-A--
1 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
150709 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
1 CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
*
150755 CAGATAGGGAGGAGTTGG
1 CCGATAGGGAGGAGTTGG
150773 TCCGAAGGAC
Statistics
Matches: 89, Mismatches: 1, Indels: 20
0.81 0.01 0.18
Matches are distributed among these distances:
36 18 0.20
38 1 0.01
39 13 0.15
40 4 0.04
42 4 0.04
43 13 0.15
44 1 0.01
46 35 0.39
ACGTcount: A:0.25, C:0.21, G:0.37, T:0.16
Consensus pattern (46 bp):
CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAATT
Left flanking sequence: Indices 150127 -- 150626
CACCCCCTCCCTGCACTGAATTAGTGGGGCGGCCCCCAGTTATACGTAGAAGACTTTGGCTTGAA
CCTTCGATCGGCGAGGTCCAGTGATGAGCCCGCCCCTTCTATAAGGTTTGGCGCTTAAAAGCGCC
TAACAAAATATTAAAGCCTTCGGCTTTACCGGCCGCCTATCTTGGATTGTTTCTTTCATGATCGA
GTAAAGGGTGTGTATGTTTATCGTGTTGAAGCGCGGGTATCGAAATCGATTCACCACGATGAGAT
ATAGAAATGGGTCTTGAGGTTTTTTCTCAACGCCCCTTCATATAAAGTGCAGTCCGTGACGGCCT
AGGCCCGAGAATCTAGGCTCGTATATGATACCGAGGACCATCCCAGCCATTTCGACTCGTGGGCT
GGCTACCGTGAGTGGTCTCTCTCCGTCCTTCCCCTATTGGAATGATGACTCGGTGAGAAGCCTTC
ACGTCGAAGGGCAGGGGCCCCCAAGGGTCCGAAGGACAACTCCGA
Right flanking sequence: Indices 150773 -- 151272
TCCGAAGGACCACTCCGACCGATAGGGAGGCCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGA
GGACAACTCCGGCCTACCGGGAGGAGTTGGGGGAGTTGGGTTTGAGCGCGTAGCGCAAAAAGCTC
CCGCCAAGGGGGGTTAAAAGTAGCGCCCCCCTGCCCATAAGGGCAACTCCGACGGGAGGAGTTGG
TTTTACTTTCCGGCGCGTAGCGCTTTCTCGGCCTTCTCAACTTCTTGCTAAAGCGTGAACCATGC
GTCAATGCCGTCAAGAGTTTCTCTCTGTGCGTCGCCGAATCAATTTCGGGCGATGTGTTGCCAGG
ATCTATTCGGGGTCTCGTTGTAAGCTGCTACGAGCACTGGAGGGGGTGGAATGAACTTCTGGTTC
GTTTCCCTGGGAAATTGCCCTTGCCGGGCTTTACCACCCTTGCTATCACCTATCTGACTAAATAT
CGGTTCCATGCATTGTTCGTTCACTCGTTCTTCGACCGGGTCATC
Found at i:150734 original size:39 final size:36
Alignment explanation
Indices: 150607--150802 Score: 194
Period size: 46 Copynumber: 4.9 Consensus size: 36
150597 GGCCCCCAAG
150607 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
150643 GGCCCTCCGATAGGAGGGCAACTCCGAATTCCGATAGGGAGGAGTT
1 GG---TCCGA-AGGA---CAACTCCG-A--CCGATAGGGAGGAGTT
150689 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
*
150725 GGCCCTCCGATAGGAGGGCAACTCCGAATTCAGATAGGGAGGAGTT
1 GG---TCCGA-AGGA---CAACTCCG-A--CCGATAGGGAGGAGTT
*
150771 GGTCCGAAGGACCACTCCGACCGATAGGGAGG
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGG
150803 CCAACTCCGA
Statistics
Matches: 137, Mismatches: 3, Indels: 40
0.76 0.02 0.22
Matches are distributed among these distances:
36 31 0.23
38 2 0.01
39 25 0.18
40 8 0.06
42 8 0.06
43 26 0.19
44 2 0.01
46 35 0.26
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (36 bp):
GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTT
Left flanking sequence: Indices 150107 -- 150606
TTATGCTCCCTTGGTAGGGCCACCCCCTCCCTGCACTGAATTAGTGGGGCGGCCCCCAGTTATAC
GTAGAAGACTTTGGCTTGAACCTTCGATCGGCGAGGTCCAGTGATGAGCCCGCCCCTTCTATAAG
GTTTGGCGCTTAAAAGCGCCTAACAAAATATTAAAGCCTTCGGCTTTACCGGCCGCCTATCTTGG
ATTGTTTCTTTCATGATCGAGTAAAGGGTGTGTATGTTTATCGTGTTGAAGCGCGGGTATCGAAA
TCGATTCACCACGATGAGATATAGAAATGGGTCTTGAGGTTTTTTCTCAACGCCCCTTCATATAA
AGTGCAGTCCGTGACGGCCTAGGCCCGAGAATCTAGGCTCGTATATGATACCGAGGACCATCCCA
GCCATTTCGACTCGTGGGCTGGCTACCGTGAGTGGTCTCTCTCCGTCCTTCCCCTATTGGAATGA
TGACTCGGTGAGAAGCCTTCACGTCGAAGGGCAGGGGCCCCCAAG
Right flanking sequence: Indices 150803 -- 151302
CCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGGCCTACCGGGAGGAGTTGG
GGGAGTTGGGTTTGAGCGCGTAGCGCAAAAAGCTCCCGCCAAGGGGGGTTAAAAGTAGCGCCCCC
CTGCCCATAAGGGCAACTCCGACGGGAGGAGTTGGTTTTACTTTCCGGCGCGTAGCGCTTTCTCG
GCCTTCTCAACTTCTTGCTAAAGCGTGAACCATGCGTCAATGCCGTCAAGAGTTTCTCTCTGTGC
GTCGCCGAATCAATTTCGGGCGATGTGTTGCCAGGATCTATTCGGGGTCTCGTTGTAAGCTGCTA
CGAGCACTGGAGGGGGTGGAATGAACTTCTGGTTCGTTTCCCTGGGAAATTGCCCTTGCCGGGCT
TTACCACCCTTGCTATCACCTATCTGACTAAATATCGGTTCCATGCATTGTTCGTTCACTCGTTC
TTCGACCGGGTCATCCTACTTCAAAGGTATACTGCATTTTCGTTC
Found at i:150744 original size:82 final size:82
Alignment explanation
Indices: 150607--150802 Score: 374
Period size: 82 Copynumber: 2.4 Consensus size: 82
150597 GGCCCCCAAG
150607 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
*
150672 TCCGATAGGGAGGAGTT
66 TCAGATAGGGAGGAGTT
150689 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
150754 TCAGATAGGGAGGAGTT
66 TCAGATAGGGAGGAGTT
*
150771 GGTCCGAAGGACCACTCCGACCGATAGGGAGG
1 GGTCCGAAGGACAACTCCGACCGATAGGGAGG
150803 CCAACTCCGA
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 112 1.00
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (82 bp):
GGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGAAT
TCAGATAGGGAGGAGTT
Left flanking sequence: Indices 150107 -- 150606
TTATGCTCCCTTGGTAGGGCCACCCCCTCCCTGCACTGAATTAGTGGGGCGGCCCCCAGTTATAC
GTAGAAGACTTTGGCTTGAACCTTCGATCGGCGAGGTCCAGTGATGAGCCCGCCCCTTCTATAAG
GTTTGGCGCTTAAAAGCGCCTAACAAAATATTAAAGCCTTCGGCTTTACCGGCCGCCTATCTTGG
ATTGTTTCTTTCATGATCGAGTAAAGGGTGTGTATGTTTATCGTGTTGAAGCGCGGGTATCGAAA
TCGATTCACCACGATGAGATATAGAAATGGGTCTTGAGGTTTTTTCTCAACGCCCCTTCATATAA
AGTGCAGTCCGTGACGGCCTAGGCCCGAGAATCTAGGCTCGTATATGATACCGAGGACCATCCCA
GCCATTTCGACTCGTGGGCTGGCTACCGTGAGTGGTCTCTCTCCGTCCTTCCCCTATTGGAATGA
TGACTCGGTGAGAAGCCTTCACGTCGAAGGGCAGGGGCCCCCAAG
Right flanking sequence: Indices 150803 -- 151302
CCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGGCCTACCGGGAGGAGTTGG
GGGAGTTGGGTTTGAGCGCGTAGCGCAAAAAGCTCCCGCCAAGGGGGGTTAAAAGTAGCGCCCCC
CTGCCCATAAGGGCAACTCCGACGGGAGGAGTTGGTTTTACTTTCCGGCGCGTAGCGCTTTCTCG
GCCTTCTCAACTTCTTGCTAAAGCGTGAACCATGCGTCAATGCCGTCAAGAGTTTCTCTCTGTGC
GTCGCCGAATCAATTTCGGGCGATGTGTTGCCAGGATCTATTCGGGGTCTCGTTGTAAGCTGCTA
CGAGCACTGGAGGGGGTGGAATGAACTTCTGGTTCGTTTCCCTGGGAAATTGCCCTTGCCGGGCT
TTACCACCCTTGCTATCACCTATCTGACTAAATATCGGTTCCATGCATTGTTCGTTCACTCGTTC
TTCGACCGGGTCATCCTACTTCAAAGGTATACTGCATTTTCGTTC
Found at i:152728 original size:34 final size:34
Alignment explanation
Indices: 152690--152754 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
152680 CCTCCCGGTA
152690 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
152724 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
152755 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.09, C:0.32, G:0.31, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 152190 -- 152689
CCCCCACCCCTTATTAGGGGGTTTAAAGTAGCGCCCCCAACTCCTCCCTTCGGTCGGAGTGGTCC
TCGCTTCGCTCGGACCCTGGCAACTCTTCCCGGTAGGTCGGAGTTGCCCTCCTGCCGGAGGGCAG
GGGGGCGCTACTTTAAACCCCCCGGGGCCGAAGGCCCCCTGGCAACTCGTTAAAGTCTAAAGTCA
ATTAATTTTCGCGCTGAATTCAACTAATTTTCAATTAATTTAAAATTAGTTGAATTCAGACTTTT
AAGTCGAAAATTCATTGAATTTGAACGGAATTCAAATTTGTTGTCCCCCAACTCCTCCCTCCGGT
CGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGAATTCGGAGTTGTCCTCCCGGTAGGCCGGCAG
TTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGTACTTTTAGCGCTGGTTTTCGCGACGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 152755 -- 153254
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
GGTCCTCCTGTCGGAGGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCC
TCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTGCAGAAAGTACTCCATGGGGAATATTA
TGTCGCACCCCCATGTTGTTGGGGGCGATCGAGTCTGTCAAAGCGCAACCCAATCAAGGAAAGTT
TTCCGTCCGGAGTGCTTGTCCAGGGAGGGAGTTTACTCGACCCCCTCGTTTCGGTAGGAATTAGT
CCCCTACGAGAGATGATCCCGGGACATTGGCTTCCGCCAACAGTG
Found at i:153008 original size:39 final size:42
Alignment explanation
Indices: 152920--153024 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 42
152910 AAAGGTTCTT
*
152920 GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGAG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGG--CTCCTGTC-G-G
152966 GACCAACTCCTCCCTCTCGGAATTCGGAGTGG-TCCT-TC-G
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGCTCCTGTCGG
*
153005 GACCAACTCCTCCCTATCGG
1 GACCAACTCCTCCCTCTCGG
153025 TCGGAGTTGC
Statistics
Matches: 57, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
39 20 0.35
42 2 0.04
43 4 0.07
46 31 0.54
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.24
Consensus pattern (42 bp):
GACCAACTCCTCCCTCTCGGAATTCGGAGTGGCTCCTGTCGG
Left flanking sequence: Indices 152420 -- 152919
TAATTTAAAATTAGTTGAATTCAGACTTTTAAGTCGAAAATTCATTGAATTTGAACGGAATTCAA
ATTTGTTGTCCCCCAACTCCTCCCTCCGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTTCGGAA
TTCGGAGTTGTCCTCCCGGTAGGCCGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGT
ACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACT
CCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCT
TTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
Right flanking sequence: Indices 153025 -- 153524
TCGGAGTTGCCCTCCTTCGGAGGGCCCTGCAGAAAGTACTCCATGGGGAATATTATGTCGCACCC
CCATGTTGTTGGGGGCGATCGAGTCTGTCAAAGCGCAACCCAATCAAGGAAAGTTTTCCGTCCGG
AGTGCTTGTCCAGGGAGGGAGTTTACTCGACCCCCTCGTTTCGGTAGGAATTAGTCCCCTACGAG
AGATGATCCCGGGACATTGGCTTCCGCCAACAGTGAACTCTTAAGGATCGCATCCCGCGCATATT
CCGCATTATAGCCCGCGACTGATTCAGCTTCTGCTTCTGGTGGATCGGACGGAGCTCGATTAGTT
TCTGCTGAGCAAGAAATGGAAAACATAATCGATACAGGAAACAAGGGAATGCCAAACCATATCTA
CTTTTACGCTATGACAATCTCACTGAAGTTACGAGAACCTACACAGATTAGTACAGTATACCGAG
AGGGGCAGGGTGGCCTTGCCGGCCACCCTAGGCGCCCGGCAAGGG
Found at i:153041 original size:39 final size:37
Alignment explanation
Indices: 152965--153045 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 37
152955 TCCTGTCGGA
* *
152965 GGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTC
1 GGACCAACTCCTCCCTATCGG-A-TCGGAGTGCTCCTTC
153004 GGACCAACTCCTCCCTATCGG-TCGGAGTTGCCCTCCTTC
1 GGACCAACTCCTCCCTATCGGATCGGAG-TG--CTCCTTC
153043 GGA
1 GGA
153046 GGGCCCTGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
36 6 0.16
37 2 0.05
39 29 0.78
ACGTcount: A:0.15, C:0.37, G:0.23, T:0.25
Consensus pattern (37 bp):
GGACCAACTCCTCCCTATCGGATCGGAGTGCTCCTTC
Left flanking sequence: Indices 152465 -- 152964
TGAATTTGAACGGAATTCAAATTTGTTGTCCCCCAACTCCTCCCTCCGGTCGGAGTTGTCCTCGC
TTCGCTCGGACCCTTCGGAATTCGGAGTTGTCCTCCCGGTAGGCCGGCAGTTAAAAGTGTTTAAA
GCTCCCTAGTACTTTAAAGTACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAA
CTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCA
ATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
CCGAAGGGAGGAGTTGCGCTTTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGA
Right flanking sequence: Indices 153046 -- 153545
GGGCCCTGCAGAAAGTACTCCATGGGGAATATTATGTCGCACCCCCATGTTGTTGGGGGCGATCG
AGTCTGTCAAAGCGCAACCCAATCAAGGAAAGTTTTCCGTCCGGAGTGCTTGTCCAGGGAGGGAG
TTTACTCGACCCCCTCGTTTCGGTAGGAATTAGTCCCCTACGAGAGATGATCCCGGGACATTGGC
TTCCGCCAACAGTGAACTCTTAAGGATCGCATCCCGCGCATATTCCGCATTATAGCCCGCGACTG
ATTCAGCTTCTGCTTCTGGTGGATCGGACGGAGCTCGATTAGTTTCTGCTGAGCAAGAAATGGAA
AACATAATCGATACAGGAAACAAGGGAATGCCAAACCATATCTACTTTTACGCTATGACAATCTC
ACTGAAGTTACGAGAACCTACACAGATTAGTACAGTATACCGAGAGGGGCAGGGTGGCCTTGCCG
GCCACCCTAGGCGCCCGGCAAGGGCGCCTGGCCCCCCGGTCAGAA
Found at i:155082 original size:33 final size:33
Alignment explanation
Indices: 155028--155091 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
155018 CCTCCCGGTA
* *
155028 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
* * *
155061 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCC
155092 TTATGGGCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 154528 -- 155027
ACTTGGATAAGTCTGGAGTGCCTATCGATGCATGTCCAGGGCATATGCCTAGGGAACGGGTGGGA
AGTTTTCCAGTTCCCGGCGCCCGCCTCCTGTCATCAGTTCTTCGGCCACACCGGAGTATCCTACT
ACTATCGTTGTCCGGATCGGAAATATAGCTGTTGGCTAAGAGAGAGTTTCCTCACACCTCACATG
GGAGTCCTGCGACCTTAGACCCTTTTTCTACCAAAGTGCTAACTAAGTTACCCGTTTCGTCTCGC
CGGATATCCTCTCGTCATTCCAACTCCTCCCGGTAGGTCGGAGTTGCCCTCCTGCCGGAGGGCAG
GGGGGCGCTACTTTAAACCCCCCTTTAAAGGGGTGGGGGGCCTCCGGCCCCCCCGGGCCCTTTGG
GCCAGCCTCGGCCGGCAAGGCCCCCTGCCCTTGGCTAGACTCTTCCTGTTGTAGCCAGCCAACTC
CTCCCGGTAGGTCGGAGTTGCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 155092 -- 155591
TTATGGGCCCTGAGGCTATTCGGTTCGTCCCACACGAGACTCGATCGGGCACTCATCAGCCGCCG
CCCAATCTGACCATCCCCCCGGCCCACAAGGAGAATCCCTCTATTGGCAACTCTCGGTCCGAAGG
AGACTCCCCCGATAGGGGAGGGGACTCGACCGATAGGGTCAGGTTGGCCGGCAGGGCCACCCTAG
GGCGGCCTAGCCCTGTCCGACCCACCGGGTCCGGGCGAAGCGAGGACGACTCCCCGGTTGGGAGT
TGGGGAGGTTTCGCTTTCTCTGATTCTGCTGTGCCTTCCTTTAGCCCCCAAACTCCCCTCCATCC
ATAGTTCCGTAGGGGAGGCGGAGACACGGCTTTGCTTTTCGAGTGCCCCCAGTAAATAAATGGAA
GTAAGCCCTGCGTGTTTCCGGCACAGCGTATTATCACCTACAGCCCTTTCCTCCAAGCACTTTCA
ATCGGCAACAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGC
Found at i:160475 original size:9 final size:9
Alignment explanation
Indices: 160461--160489 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
160451 CTTTAAACGC
160461 CCAACTCCT
1 CCAACTCCT
160470 CCAACTCCT
1 CCAACTCCT
160479 CCAACTCCT
1 CCAACTCCT
160488 CC
1 CC
160490 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 159961 -- 160460
AATCTACTGGGTTGTTTCCAACCGACGATTGGACGCACGATCTACTATTTACTTGATTCCCATCT
GGATTGGGCTTTCGATCTACGAGCGAACAGCTGCAGGAAGGGTGGACATTGGGAAAACGCTAGAA
TTATGAGTCGGTTACAAAAAGTCCAAATGACTCTTTATTCAGCTCTTTTTATAATGAATTAGAAT
TCAGCGCCCTTTAAAGTTCCTCAAGGAGTACCGACTTCACCCAACTCCCGTCCCCACCCACTTCA
TGGGTGGTGGTGGGGCAGGGTTGTCCGTTAGGACAAGCGCCGGGCAGTTAAAAGTAGCGCTGCCC
TTGCCAGGCCCCGGGAGTTGGCCCTCCCCCTCCCTGGGTCGGGGGGGTGTCCTCCGGACCAACTC
CTCCCTATCGGTCGGAGTTGTCCTCCTATCGGAGGACCCTTGCGGTCCAACTCCTTTAAACCCCA
CCAACTTTGTGGGGGGGCGGGAGTAGGCTAAAGCACTTTAAACGC
Right flanking sequence: Indices 160490 -- 160989
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTGGGGGCCCCTGGCCCTGGACGTTTTGCCT
TATCCGATAGGGCGGTGGAGTGAGCCGAGTGCTTCACTTGACAGAAGCCTTTTAAAAGGGTGGCT
TTCAATGTTTGTTGCTAAATAGTCTGGCCTGCTTCGAAGGAGCATTGTTGCGCGCTTCTCTGCTT
TTAGCGATTCTTCCTGTATCTCTTGCTCGCTTCGCCGGGACTTCTCGCCCCTCTCAGTAGGGCAC
GCGCATCTGAAGCTTGCTCCGTTGCGCCCCTTTAAAAGCGCGCTCCGCTCGTTTGCTTCGATAGC
GCCTTACGTGAGAGGGGCAGAATAAGAGCTAAAGCTGCCTAGGGTGTGAGGTCTGGCTTGCGGGG
TTCTTCTCCGGCTCCACCAGCAGCCTTTATCAGCTGCTATGGTTC
Found at i:163231 original size:31 final size:29
Alignment explanation
Indices: 163193--163250 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
163183 GCCAACTCCC
163193 CCAACTCCTCCCGGTAGGTCGGAGTTGTCTT
1 CCAACTCCT-CC-GTAGGTCGGAGTTGTCTT
* *
163224 CCAACTCCTCCTTCGGTCGGAGTTGTC
1 CCAACTCCTCCGTAGGTCGGAGTTGTC
163251 CTCGCCCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 14 0.56
30 2 0.08
31 9 0.36
ACGTcount: A:0.12, C:0.34, G:0.24, T:0.29
Consensus pattern (29 bp):
CCAACTCCTCCGTAGGTCGGAGTTGTCTT
Left flanking sequence: Indices 162693 -- 163192
GGCTGAATCGCGGGGGCCACCACCCCTTAAAACATGTCACTTCGCCCTTAAAAGCGTCTTTGAGT
TCACTTCTGGTGCGCAAAGCGCGTATTGAGATGCTTTTTCAATGGCCCGAACAAATTCGATACGC
GCGGGCCTCTAGGCTTCATCGGCATTCTAGGCTGGCTTGCGTCATCGACTGACTCGGAAAAAGCT
GAATCGGCTGCGAAATCGACTACGTAGGCAAAGGCTGAATTGGCATCTGAGGCCAAATCAGCTTC
ATCGGCATCGGCATTCGCTGAATCGGCATACCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTT
GTCCTCACTTCGTTCGGACCCTATCGGAATTATTTGTGGCCAACTCCCCCCACTCCTCCCGGTAG
GTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCGGAGTGGTCCTCGCTTCGCTCGGACCCTA
CAGGTCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCAACTCCC
Right flanking sequence: Indices 163251 -- 163750
CTCGCCCCTTTTAGAAGTCCCGGTGGGTCAGACCCTTATGGGCAGGGGGGCGCGTATTTAAACCC
CCTTTAAAGGGCAGCCTGGCAGGCTGACCTGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGT
GGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTT
GTCCTATCGGACCCACTCCTCCCTATCGGAATTCGGAGTTGTCCTCCTGTCGGAGGACCCTGAAG
CTGCTGACTCGGCTTCATCGGCTGAGGCTAAATTCGGCTAGATCGGCTGTAGCTGAATCGACAAG
AAGGTTACTCTAATTTAATTTAATTTAAAATTAAAGTAAATTAGCTTTTGAGTGGCGGATTGCGA
TATCGAATTCAATTCAATAGAATGCTTTCCCTTCGAACCATCGAATTCGACGTTTCCATCCAGGT
TTCTTTTCAAAGTCTTGCCCAATGAGATCTTCTCTTTCAGCAACC
Found at i:164993 original size:34 final size:34
Alignment explanation
Indices: 164952--165016 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
164942 GCTTTAAAAG
164952 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
164986 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACC
165017 TACCGGGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.31, G:0.32, T:0.09
Consensus pattern (34 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Left flanking sequence: Indices 164452 -- 164951
AAGTTCAGGTTCTTGCTTGCACCTATGTATGAAATTTTGGGACAAGTTCCGTGCTGGCCCACGAG
GAGCCGGTCCAAAGGCCGATAGGCGCACCAAAGAGCTTCCGAAGGCGGGCCTTTGGCGGACCAAG
AAATAAGGAATGCCGAAGGGCTAGGCGGCTACTTCTCTAGATGAGAAGATGTTGCGGTAGGCCTA
CCTAATCCATTCAGTCACTCGCTACTAGGCCCCGCAAACCTAGTGTACGCCTATCCCACCCCCTA
TCGGTACCCTTCCCGGTAACGCAGTGGTAGCGTTTTTGGCAGCCTAGCAGCTAGTGGCCCCCGCG
GCACCGTCCCCGTCCAACTCCTCCCGCCGGAATTCAAATTTGTTGTCCCCCAACTCCTCCAACTC
CTCCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGG
ACCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAG
Right flanking sequence: Indices 165017 -- 165516
TACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAG
CTCCCTTTTTAGAATTCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATCATTAATTT
TCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGAAATTAAATTAAAGTAACCTCAGC
GGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCG
ACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTTACTT
AAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGTGGTC
CTCCTGTCGGAGGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCTAT
CGGTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCG
Found at i:165183 original size:35 final size:35
Alignment explanation
Indices: 165139--165207 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
165129 GCGGTTAATC
165139 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
165174 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
165208 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 164639 -- 165138
TAGGCCTACCTAATCCATTCAGTCACTCGCTACTAGGCCCCGCAAACCTAGTGTACGCCTATCCC
ACCCCCTATCGGTACCCTTCCCGGTAACGCAGTGGTAGCGTTTTTGGCAGCCTAGCAGCTAGTGG
CCCCCGCGGCACCGTCCCCGTCCAACTCCTCCCGCCGGAATTCAAATTTGTTGTCCCCCAACTCC
TCCAACTCCTCCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGA
AGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAG
TGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCTCCCTTTTTAG
AATTCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 165208 -- 165707
CAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
GGTCCTCCTGTCGGAGGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCC
CTATCGGTCGGAGTTGTCCTGACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGCCC
TCCTATCGGAGGGCCCTGGTAGGGCCGAGGGAACGAACTCCGTGAGCGACGCGTGGAGCAGAAAA
AGAGCTTTTGGCTTCGAGAACAGCCCAATTTCTTTTCTTTCGCGCTTTTCAAAAACGCGAGAAAC
TATGTTACTTTAATTTAATTTAATTTCATTGAAAATTAAAGGTTC
Found at i:165448 original size:43 final size:44
Alignment explanation
Indices: 165373--165544 Score: 134
Period size: 46 Copynumber: 4.0 Consensus size: 44
165363 AAAGGTTCTT
* *
165373 GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGAG
1 GACCAACTCCTCCCTATCGG-A-TCGGAGTGGTCCTCCTGTCGGAG
165419 GACCAACTCCTCCCTATCGG-TCGGAGTGG---TCCT-TC---G
1 GACCAACTCCTCCCTATCGGATCGGAGTGGTCCTCCTGTCGGAG
* *
165455 GACCAACTCCTCCCTATCGG-TCGGAGTTGTCCTGACCTG--GCAG
1 GACCAACTCCTCCCTATCGGATCGGAGTGGTCCT--CCTGTCGGAG
* * *
165498 TG-CCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAG
1 -GACCAACTCCTCCCTATCGG-A-TCGGAGTGGTCCTCCTGTCGGAG
165544 G
1 G
165545 GCCCTGGTAG
Statistics
Matches: 105, Mismatches: 6, Indels: 31
0.74 0.04 0.22
Matches are distributed among these distances:
36 29 0.28
39 3 0.03
40 4 0.04
41 3 0.03
43 28 0.27
44 4 0.04
45 1 0.01
46 33 0.31
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.24
Consensus pattern (44 bp):
GACCAACTCCTCCCTATCGGATCGGAGTGGTCCTCCTGTCGGAG
Left flanking sequence: Indices 164873 -- 165372
GGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAG
TAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCC
GTCGCGAAAACCAGCTCCCTTTTTAGAATTCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGG
TTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTAATTTTCAAGGAAATTAAATT
AAAGTAACCTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCT
TTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
Right flanking sequence: Indices 165545 -- 166044
GCCCTGGTAGGGCCGAGGGAACGAACTCCGTGAGCGACGCGTGGAGCAGAAAAAGAGCTTTTGGC
TTCGAGAACAGCCCAATTTCTTTTCTTTCGCGCTTTTCAAAAACGCGAGAAACTATGTTACTTTA
ATTTAATTTAATTTCATTGAAAATTAAAGGTTCTTTAGTTTTTTGAATTTGAAATAGTTTCTCGC
TTTCTTTAAAGAGTTTCTCGACTTTTTTTCCTTGAAAGCGCGTAGCGCTAAGTTGCCTGCCCTGC
CTGCCTGTGAAGGGGCTTGGATGATGGAACCAGAGAAGGTGATGGAACCAAAGTACGTGCATGAG
GGGCTTTAGCCACTGGCTGGGGTAGGGGCCCCAGCCAGGGGCGAGAAATGGTATATAGGACGTGC
GGTGCTTTCACTGCCCTGCCTTGCCTGTACCGCCTTCCCTGCCCTTCGGTGTGGGTGCTACGTGC
AGATATTCTGTTTTTGGGACCAGAGAAAAAGGTGGGGTTTTGCCT
Found at i:165463 original size:36 final size:36
Alignment explanation
Indices: 165418--165487 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
165408 TCCTGTCGGA
165418 GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTC
1 GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTC
*
165454 GGACCAACTCCTCCCTATCGGTCGGAGTTGTCCT
1 GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCT
165488 GACCTGGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.14, C:0.36, G:0.24, T:0.26
Consensus pattern (36 bp):
GGACCAACTCCTCCCTATCGGTCGGAGTGGTCCTTC
Left flanking sequence: Indices 164918 -- 165417
GAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTCCGAACGAAGTGAGGACCACTCCGACC
GAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTGGGGGGAGT
TGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCTCCCTTTTTAGAATTCGGTCTTTAGACACT
CGACCGAAGGGAGAGGGCGGTTAATCATTAATTTTCAAGGAAATTAAATTAAAGTAACCTAATTA
ATTTTCAAGGAAATTAAATTAAAGTAACCTCAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCC
GCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
CCGAAGGGAGGAGTTGCGCTTTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGA
Right flanking sequence: Indices 165488 -- 165987
GACCTGGCAGTGCCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCCTGGT
AGGGCCGAGGGAACGAACTCCGTGAGCGACGCGTGGAGCAGAAAAAGAGCTTTTGGCTTCGAGAA
CAGCCCAATTTCTTTTCTTTCGCGCTTTTCAAAAACGCGAGAAACTATGTTACTTTAATTTAATT
TAATTTCATTGAAAATTAAAGGTTCTTTAGTTTTTTGAATTTGAAATAGTTTCTCGCTTTCTTTA
AAGAGTTTCTCGACTTTTTTTCCTTGAAAGCGCGTAGCGCTAAGTTGCCTGCCCTGCCTGCCTGT
GAAGGGGCTTGGATGATGGAACCAGAGAAGGTGATGGAACCAAAGTACGTGCATGAGGGGCTTTA
GCCACTGGCTGGGGTAGGGGCCCCAGCCAGGGGCGAGAAATGGTATATAGGACGTGCGGTGCTTT
CACTGCCCTGCCTTGCCTGTACCGCCTTCCCTGCCCTTCGGTGTG
Found at i:166755 original size:33 final size:33
Alignment explanation
Indices: 166701--166764 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
166691 CCTCCCGGTA
* *
166701 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
* * *
166734 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCC
166765 TTATGGGCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 166201 -- 166700
GAAAAGAAGAGATGGTGGCTTTGGTTCTGCCCTGCCTTGCCCGTGTGGTGGTGGGGTGGGACAGC
TTTGCGCAAGAGTGAATTGGTTTGTTGGTCAATCAATACTAAGTCTGCCTCTTCTCTTTGGACAG
GAAGGGAAAAAAGGTGAAGGTGGTGTGGGGGAGAAAAACGTCTATAGGACTTTCTGCCCTTGCTG
TCACTGAATCTGCCCCCCCTGCCCGTGAAGTGGGTGCGAAGAAACCCGCCTGTAGCTGCCTCTGA
GAGGCCCAGGCTAAGGTCTGAAATTCCTGCTTCTCTGGAGCTTTTTAAAAGGCCTGCGTGCAGAG
AACGAAGAAGGGGCGCCACTGGTCTGCGAAGCGCTACAGGTTGGGTGGGGAACTTCAGTTGAAGC
GCGTAGCGCCACTCCCTGCCCTTCCCGGGTGGGGACCGCAGAGGTTGGGTAGCGTGCCCTCTTTG
TTTTTGATGGGGGTGCCACTCCAACTCCCCCAACTCCTCCCGGTA
Right flanking sequence: Indices 166765 -- 167264
TTATGGGCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCTGTGGTGGGCT
TTCCGTTCCGTTCGGAATTCTGTGTGGACAGAAAGCGGTGGTGGGGCTGAGTCTGCTTTTCCTGC
CTTCCCTGCCTGCCTGTGATGGGACCTTTGAAGGTGCTGCCTTCCCTGCCCGTGAAGTGGGGTGG
GGCAGGCTGGGCTACAGCCCACCCGGCGGGAAGCCGTAAGGCTTGCCTGGCCATCTTTGCCTGTT
CCGAATTCAATGCGATGCGGTGCGGTGGCAGAATGCAGTGCTGCGTACGTAGCTGGCCCTTCTCT
TTCCCTTCTTCCTTCCCGTTCCGTTGGGCGTCGTCCGCCCTCCCTGCCAAAGGTGGGGTGGCCGC
TTCACTTGAAAGGGGTGGGGGTGCGCTCCCTGCCTGTAGGTGGGGGTGGGGTGCCATACAGCCTG
TGTACCACCTGAAGGAAGGTTTACGGCAAGGGGTGGGGGGCCTCC
Found at i:169508 original size:34 final size:35
Alignment explanation
Indices: 169446--169530 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 35
169436 CCTCCGATAG
*
169446 GAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
*
169481 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
169515 GAGGACAACTCCGACC
1 GAGGACAACTCCGACC
169531 CTCTCCCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
34 31 0.66
35 16 0.34
ACGTcount: A:0.29, C:0.29, G:0.32, T:0.09
Consensus pattern (35 bp):
GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
Left flanking sequence: Indices 168946 -- 169445
TCAATTCCTTTGGGGGGCCGAATAGCTCCGATCTCTACCGTAGGTGCCAAAGAAGAATGAAAGGA
AGCCCGAAAGAAAGCTAAAAGAAACATGACCTCGGAGACGGTGAACGAAGGAGAACCTACACGAG
GTCCTGATTGTACCACTTTGGTATGATGCCCTTCGTAAGTGGATTCACGTAAAACATCGCGCCAC
CATACAAACATGGTATATAAGATTAATCCCAAGCCTGAACCAGGAAGTGTTGCACCTCCTGTAAA
TGAATGCATGTACATAACACCACCAAGGGTGCTGGCCAAAGCTCCCAGTGACCCCAAAAGAGGCC
ATGGACTTGGATCTACTAAATGATAAGGATGCTTCTGGGAGACACTCATTCCGATGAATCTTTTC
GTTCCGCAGAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTTAATACTCATGAG
AATTCCCTCGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGATAG
Right flanking sequence: Indices 169531 -- 170030
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCT
ACCGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAG
GGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGG
GTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGG
AGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCC
GACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCA
CTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGA
CAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGA
Found at i:169673 original size:160 final size:158
Alignment explanation
Indices: 169488--169784 Score: 522
Period size: 160 Copynumber: 1.9 Consensus size: 158
169478 AGTGAGGACC
169488 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
1 ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
* * * *
169553 TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTG
66 TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGA-AGGGAGGAGTGGGAGGAGTG
169618 GGAGGAGTTGGCCCTCCGATAGGAGGGCA
130 GGAGGAGTTGGCCCTCCGATAGGAGGGCA
169647 ACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
1 ACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
* *
169712 CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTT
65 CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTG
169777 GGAGGAGT
130 GGAGGAGT
169785 GGGAGGAGTT
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
159 35 0.27
160 96 0.73
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.14
Consensus pattern (158 bp):
ACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTGG
GAGGAGTTGGCCCTCCGATAGGAGGGCA
Left flanking sequence: Indices 168988 -- 169487
GGTGCCAAAGAAGAATGAAAGGAAGCCCGAAAGAAAGCTAAAAGAAACATGACCTCGGAGACGGT
GAACGAAGGAGAACCTACACGAGGTCCTGATTGTACCACTTTGGTATGATGCCCTTCGTAAGTGG
ATTCACGTAAAACATCGCGCCACCATACAAACATGGTATATAAGATTAATCCCAAGCCTGAACCA
GGAAGTGTTGCACCTCCTGTAAATGAATGCATGTACATAACACCACCAAGGGTGCTGGCCAAAGC
TCCCAGTGACCCCAAAAGAGGCCATGGACTTGGATCTACTAAATGATAAGGATGCTTCTGGGAGA
CACTCATTCCGATGAATCTTTTCGTTCCGCAGAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGG
GTTTCTCCCTTAATACTCATGAGAATTCCCTCGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGA
TAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACC
Right flanking sequence: Indices 169785 -- 170284
GGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGC
AACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGA
GGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGT
TGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGG
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCC
TCCTATCGGAGGGCCCTAGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTG
CCCCCTCATTTCTACGAAGAGCTTCTTCGATAATAGTTTTTACCT
Found at i:169773 original size:9 final size:9
Alignment explanation
Indices: 169759--169796 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
169749 CCGACCGAAG
169759 GGAGGAGTT
1 GGAGGAGTT
169768 GGAGGAGTT
1 GGAGGAGTT
*
169777 GGAGGAGTG
1 GGAGGAGTT
169786 GGAGGAGTT
1 GGAGGAGTT
169795 GG
1 GG
169797 TCCGAAGGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.21, C:0.00, G:0.61, T:0.18
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 169259 -- 169758
CCAAAAGAGGCCATGGACTTGGATCTACTAAATGATAAGGATGCTTCTGGGAGACACTCATTCCG
ATGAATCTTTTCGTTCCGCAGAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTT
AATACTCATGAGAATTCCCTCGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGATAGGAGGGCAA
CTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGG
ACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
Right flanking sequence: Indices 169797 -- 170296
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGA
TAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGA
CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGA
CAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
GAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGG
GCCCTAGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTC
TACGAAGAGCTTCTTCGATAATAGTTTTTACCTCAGCACTTAAGT
Found at i:169832 original size:36 final size:39
Alignment explanation
Indices: 169785--169866 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 39
169775 TTGGAGGAGT
169785 GGGAGGAGTTGG-TCCGA-AGGA-CAACTCCGACCGATA
1 GGGAGGAGTTGGCTCCGATAGGAGCAACTCCGACCGATA
169821 GGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATA
1 GGGAGGAGTTGG--CTCCGATAGGA--GCAACTCCGACCGATA
169864 GGG
1 GGG
169867 TCCGAACGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
36 12 0.31
39 5 0.13
40 4 0.10
43 18 0.46
ACGTcount: A:0.24, C:0.23, G:0.39, T:0.13
Consensus pattern (39 bp):
GGGAGGAGTTGGCTCCGATAGGAGCAACTCCGACCGATA
Left flanking sequence: Indices 169285 -- 169784
ACTAAATGATAAGGATGCTTCTGGGAGACACTCATTCCGATGAATCTTTTCGTTCCGCAGAGGGG
GCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTTAATACTCATGAGAATTCCCTCGGGGC
TGAGATTTGGCACTTCAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAG
TGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGT
CGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGG
GGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTG
AGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGT
Right flanking sequence: Indices 169867 -- 170366
TCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACC
GAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGGGCCCT
AGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTCTACGA
AGAGCTTCTTCGATAATAGTTTTTACCTCAGCACTTAAGTGACCCCGAGGAGAAATCTGAAGAAC
CCTTTTGATTTGTGGCAGCCGGGTCGACGACTGCCGTTTCTTCTC
Found at i:169906 original size:34 final size:34
Alignment explanation
Indices: 169844--170002 Score: 282
Period size: 34 Copynumber: 4.6 Consensus size: 34
169834 CCTCCGATAG
*
169844 GAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGA-AGGGTCCGAACGAAGT
169879 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
*
169913 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
*
169947 GAGGACCACTCCGACCGAAGGGTCCGAACGAAGT
1 GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
169981 GAGGACAACTCCGACCGAAGGG
1 GAGGACAACTCCGACCGAAGGG
170003 AGGAGTTGGA
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
34 104 0.86
35 17 0.14
ACGTcount: A:0.30, C:0.28, G:0.33, T:0.09
Consensus pattern (34 bp):
GAGGACAACTCCGACCGAAGGGTCCGAACGAAGT
Left flanking sequence: Indices 169344 -- 169843
GAGGGGGCTTCCGGCCGGTAGGCCGTAGGGGAGGGTTTCTCCCTTAATACTCATGAGAATTCCCT
CGGGGCTGAGATTTGGCACTTCAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGA
ACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCT
ATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAG
GAGTGGGGGGAGTGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAA
CGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAAC
GAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTC
CGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAG
Right flanking sequence: Indices 170003 -- 170502
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTACGGACAACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGGGCCCTAGTAGA
AGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTCTACGAAGAGCT
TCTTCGATAATAGTTTTTACCTCAGCACTTAAGTGACCCCGAGGAGAAATCTGAAGAACCCTTTT
GATTTGTGGCAGCCGGGTCGACGACTGCCGTTTCTTCTCCAATGGTTTCCCTGATTGCTGGAAGT
TCTTCAGAAGTATGAAAGGCTGGAGGACTTTGTACCATCCATTCAAGCGTGGTGTAATTATGTTC
AACAGCCCAAGGACTTGGAGCACACTTGATTCCACTGGTTGAAGT
Found at i:170015 original size:9 final size:9
Alignment explanation
Indices: 170001--170047 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
169991 CCGACCGAAG
170001 GGAGGAGTT
1 GGAGGAGTT
170010 GGAGGAGTT
1 GGAGGAGTT
*
170019 GGAGGAGTG
1 GGAGGAGTT
170028 GGAGGAGTT
1 GGAGGAGTT
170037 GGAGGAGTT
1 GGAGGAGTT
170046 GG
1 GG
170048 TCCTACGGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.21, C:0.00, G:0.60, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 169501 -- 170000
GGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGG
GTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCC
CTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTC
CCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGG
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCGACCGATAGGGAG
GAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCC
GACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
Right flanking sequence: Indices 170048 -- 170547
TCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
GAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCC
TATCGGAGGGCCCTAGTAGAAGGGTTTTGACGGGGTTGTTTAGGACGGCGCATTATTGCTTGCCC
CCTCATTTCTACGAAGAGCTTCTTCGATAATAGTTTTTACCTCAGCACTTAAGTGACCCCGAGGA
GAAATCTGAAGAACCCTTTTGATTTGTGGCAGCCGGGTCGACGACTGCCGTTTCTTCTCCAATGG
TTTCCCTGATTGCTGGAAGTTCTTCAGAAGTATGAAAGGCTGGAGGACTTTGTACCATCCATTCA
AGCGTGGTGTAATTATGTTCAACAGCCCAAGGACTTGGAGCACACTTGATTCCACTGGTTGAAGT
CACAAAGACTACTACGAAGGAACAAACAATCCCCACTACGGAAAC
Found at i:170111 original size:35 final size:35
Alignment explanation
Indices: 170054--170144 Score: 146
Period size: 35 Copynumber: 2.6 Consensus size: 35
170044 TTGGTCCTAC
* * **
170054 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
170089 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
170124 GGACCACTCCGACCTACCGGG
1 GGACCACTCCGACCTACCGGG
170145 AGGAGTGGGG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.26, C:0.33, G:0.30, T:0.11
Consensus pattern (35 bp):
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 169554 -- 170053
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTGG
GAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACT
CCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGAAGGACAACTCCG
ACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGA
AGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGT
TGGAGGAGTTGGAGGAGTGGGAGGAGTTGGAGGAGTTGGTCCTAC
Right flanking sequence: Indices 170145 -- 170644
AGGAGTGGGGGGAGTTGGAGGAGTTGGCCCTCCTATCGGAGGGCCCTAGTAGAAGGGTTTTGACG
GGGTTGTTTAGGACGGCGCATTATTGCTTGCCCCCTCATTTCTACGAAGAGCTTCTTCGATAATA
GTTTTTACCTCAGCACTTAAGTGACCCCGAGGAGAAATCTGAAGAACCCTTTTGATTTGTGGCAG
CCGGGTCGACGACTGCCGTTTCTTCTCCAATGGTTTCCCTGATTGCTGGAAGTTCTTCAGAAGTA
TGAAAGGCTGGAGGACTTTGTACCATCCATTCAAGCGTGGTGTAATTATGTTCAACAGCCCAAGG
ACTTGGAGCACACTTGATTCCACTGGTTGAAGTCACAAAGACTACTACGAAGGAACAAACAATCC
CCACTACGGAAACGTAAGAGCCGAAACTACTCGAGGCATTCCATCCAGCGTAAGCATCTGGATAA
TCAGGAATGCGACGTGGCATACCCGAAGGACCTGGGAAATGCATA
Found at i:172422 original size:34 final size:34
Alignment explanation
Indices: 172384--172448 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
172374 CCTCCCGGTA
172384 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
172418 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
172449 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.09, C:0.32, G:0.31, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 171884 -- 172383
ATATCCTTGTGGTTCGTGGAAAACAGCCATCTTTGTGCCAAATTGTTCATTTCAACGGAATCAGT
TTTTTCCTGGGGAATAATGCGATAGCCTCCTTCTATTTACCGGGGGGCAACACCCCTGTCTGTAC
TGCGCCCTCTCTTCTAAAGCGGGAGCACCCGTAGAATACTTGACTTTAAACCCCCCACCCGCTTT
AGAGATGGTGGTGGGGGCAGGGTGGCCTAAGCCACCCCGGCGGGCAGCGCGTAGCGCTGCCAACT
CCTCCCTAGGAATTATTTGTTGGCCAACTCCCCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGCGGTCGGAGTTGCCCTTTCGGGCAGGGGGCCTTTCTAAGGCCCTCTCCCT
TCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGCCGAAAGGGAACAGGTTTTCGCGCGTAGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 172449 -- 172948
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGACCCACTCCTCCCTCTCGGAATTCGGAGT
GGTCCTCCTGTCGGAGGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCC
TCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCCTTGCTTAACCTGACTCGGGGGTGCAGGGGCC
CCTTCTAAAGGGAGGCGCGCCACCTCTCGACGTTGGCTGAGAGAAGGCCTCCGCTACGCCGGCGT
AGCGCCCGCAGAAAACTAGCGCAAGGCCTTCACGCTAGCACGCGTAGCGTTTTGCCGCAATCGAA
CGCTAGGTAGAGGGGTGGCCTACTGCCGGCCCCATAGGTGAGGCC
Found at i:172702 original size:39 final size:39
Alignment explanation
Indices: 172614--172741 Score: 184
Period size: 39 Copynumber: 3.1 Consensus size: 39
172604 AAAGGTTCTT
*
172614 GACCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTCCTGTCGGAG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGG---TCCT-TC---G
172660 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
172699 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
1 GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
172738 GACC
1 GACC
172742 CTTGCTTAAC
Statistics
Matches: 81, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
39 44 0.54
42 2 0.02
43 4 0.05
46 31 0.38
ACGTcount: A:0.15, C:0.37, G:0.24, T:0.24
Consensus pattern (39 bp):
GACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCG
Left flanking sequence: Indices 172114 -- 172613
CCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCCTAGGAATTATTTGTTGGCCAACTCCCCCA
ACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGCGGTCGGAGTTGCCCTTTCG
GGCAGGGGGCCTTTCTAAGGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGCC
GAAAGGGAACAGGTTTTCGCGCGTAGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACT
CCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAG
TGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCT
TTAAAGACTTACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTT
Right flanking sequence: Indices 172742 -- 173241
CTTGCTTAACCTGACTCGGGGGTGCAGGGGCCCCTTCTAAAGGGAGGCGCGCCACCTCTCGACGT
TGGCTGAGAGAAGGCCTCCGCTACGCCGGCGTAGCGCCCGCAGAAAACTAGCGCAAGGCCTTCAC
GCTAGCACGCGTAGCGTTTTGCCGCAATCGAACGCTAGGTAGAGGGGTGGCCTACTGCCGGCCCC
ATAGGTGAGGCCCTGCGAAGCGTAGCGTAGCGGGCGCTACGCTAGCTTCGCGGGTGGTACCGGAG
GTGGCAGGGACAACAATAGTGCGGCCACCGTATAGGCGCTAGCTCCGCTATAGCGGGCACTGTGA
GTGCCCACGATAGCGAAGGCGCTTTGCTTCGCGCGTTTCACTATAGTGCCCCCGGCTGCCGCCTT
CTAGAGGGTAGGCTGCCGGCCTAGCCACGCCCGCTTCGCCCTTCCTGGGGAAAAAAGATGTGCCA
CTATAGTGCCCTCGAGAAGGGGGAAGCCCGCATAAATGCCCTCTC
Found at i:174693 original size:46 final size:46
Alignment explanation
Indices: 174640--174915 Score: 552
Period size: 46 Copynumber: 6.0 Consensus size: 46
174630 GAACAGTGCA
174640 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
174686 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
174732 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
174778 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
174824 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
174870 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
174916 TGGTTAAGGC
Statistics
Matches: 230, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 230 1.00
ACGTcount: A:0.24, C:0.26, G:0.37, T:0.13
Consensus pattern (46 bp):
GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
Left flanking sequence: Indices 174140 -- 174639
TCCCGTAGCAGCCCGTTGTTCCAGCGAGCCCCGGCCTTCATGAATATGCCATTCTATCTACAAGA
TTTTCTGTCAATTTCTGCCTGTTCGAGTAAATTGTCACAACAATTTTCCTGCTTTCCATCAAATG
CCCGTAGAGCTGCTCCTGCCGGCCAGTAGGCTAGGCTGCGGAGACTTGCATGAAGTGCTGCTGCC
CGGGAAAGAATGAGAGGAATAAGGTGAAAGAGGTAGCACTGAACGCCCCCCACTGAAGCCTCCCA
CCCGCTTCTCCCTCTTTTACGCTCGCTTTCGAGCACGCACGAACTAACTTAGCTCCCCTGCCGAG
AATGAGAGGACTTTGAAGCACTTCATGTGAAGGAGACAAAAAGCATCGAACGATATAACCTCTTG
CCCATCTGAAGGAGAGGGGAATAGGCCACCCAGTAAGGCAAGGGCATACAAACCTTACCACTGCC
ATTTCTGAAGACTTCATTATGGAATTGCGTATATAGAACAGTGCA
Right flanking sequence: Indices 174916 -- 175415
TGGTTAAGGCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGT
GGGGGCATCTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTT
CTGCTTGCTCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGC
TACTGGTTAGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCC
GGGCGCGTTTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCGAATTGAAAATTCAA
GGTTATATTTTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGACCCA
AAAACGGAGGAAGTTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGC
ACCCAAAAACGGAGGAAGTTCAATGGTTTTCCGGGTTTTTTCGAC
Found at i:175481 original size:70 final size:70
Alignment explanation
Indices: 175250--175453 Score: 401
Period size: 70 Copynumber: 2.9 Consensus size: 70
175240 AGGTTATATT
175250 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAG-ACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
175314 GGAAG
66 GGAAG
175319 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
175384 GGAAG
66 GGAAG
175389 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
175454 CTTTTTCTTG
Statistics
Matches: 134, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
69 51 0.38
70 83 0.62
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (70 bp):
TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
GGAAG
Left flanking sequence: Indices 174750 -- 175249
ACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGA
GGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTGGGTCCTCCG
ACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGTTAAGGCCCTTCCCTTCCCGGTTTCC
TTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGTGGGGGCATCTATCTACGTGTTTTTGCACC
TCAAAAACACGTAGATAGAAGAAGACACCGAGATTTCTGCTTGCTCCGAGTGGTCGAGGGTGTCG
AAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGCTACTGGTTAGCTGCCACTGCCGGTAGCCA
GCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCCGGGCGCGTTTCCTCCTTTTCCAGGTATAG
GGGTGGTCTGTTCGAAAATCCGAATTGAAAATTCAAGGTTATATT
Right flanking sequence: Indices 175454 -- 175953
CTTTTTCTTGAGTTTCCCGGGATTTTTTGACACTTTAGGCGGAAGATACTTTAATTTTCAATGAA
ATTAAATTAAAGTATTCACTTCTTGAATTAATTTTCAATTAAACCTGCTTTTTTGACCCCTTAAA
AGCGTCTAAATTCAATGAATTTTCAATGAATTGAAAATTAGTTGAATTCAGGACGTCTTGGATGT
AATCCTAACTAGGAAACTCGTGAAGGAATTAAAAGGGCGCACCCATTTCTACAGTGCACGACAAT
TTCATAACCCTTAAAAGGGCTGATTCCAGTGTCCTCAACAGCGGTTCTAATTGCCATCAGCAGTG
CTTATCAGTCGACGTTGAATCAGTTCCCAAGCACCGGAAGAGAAAGCCTCCCCTTCCCTTTCCTT
TACCCGCTGGGAGAGGTATCTCTCGTCTTCTTGGAGTTATCGTCCCATCCTCTCGTCTAATTGTC
CAATCTCTCGTCTTACCGTCTGATTACCGTCCGATTGTCTGCTGG
Found at i:176088 original size:23 final size:23
Alignment explanation
Indices: 176054--176112 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
176044 GGGAAGGAAA
*
176054 GTTTCC-CTTCCCTGCCGCTAGAG
1 GTTTCCTC-TCCCTGCCGCTAAAG
176077 GTTTCCTCTCCCTGCCGCTAAAG
1 GTTTCCTCTCCCTGCCGCTAAAG
*
176100 GTTCCCTCTCCCT
1 GTTTCCTCTCCCT
176113 CAACTAGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.08, C:0.42, G:0.17, T:0.32
Consensus pattern (23 bp):
GTTTCCTCTCCCTGCCGCTAAAG
Left flanking sequence: Indices 175554 -- 176053
CAATTAAACCTGCTTTTTTGACCCCTTAAAAGCGTCTAAATTCAATGAATTTTCAATGAATTGAA
AATTAGTTGAATTCAGGACGTCTTGGATGTAATCCTAACTAGGAAACTCGTGAAGGAATTAAAAG
GGCGCACCCATTTCTACAGTGCACGACAATTTCATAACCCTTAAAAGGGCTGATTCCAGTGTCCT
CAACAGCGGTTCTAATTGCCATCAGCAGTGCTTATCAGTCGACGTTGAATCAGTTCCCAAGCACC
GGAAGAGAAAGCCTCCCCTTCCCTTTCCTTTACCCGCTGGGAGAGGTATCTCTCGTCTTCTTGGA
GTTATCGTCCCATCCTCTCGTCTAATTGTCCAATCTCTCGTCTTACCGTCTGATTACCGTCCGAT
TGTCTGCTGGAGGGGAGTTTGCTCTACCCAGCGGGAAGAGAGAGAAGGGAAGGAGAGGTTTCCTT
TCCCTTAGCTAGGGAAGAGGGGTTTCCTTTCCCGAGGGAAGGAAA
Right flanking sequence: Indices 176113 -- 176612
CAACTAGAGAAGAGAGAGTTTCCTTTACCCCAGGGAAGATAGGGTTTCCTCTACCCTAGGGAAGA
GAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTCCTTCTCATTCCCTGCCTCTCAGCATC
GCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGCAAGCAATTGATGATGGCGGGCCCGCA
CGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCCGAAAGCAAGAGCTATAGCAATTCC
AACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAAGTTATTCTGTGCCAGGAGCCCCCC
TTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCTTAGCTAAAGAAGAGAGTTTCTTTC
CCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGTTTCCTC
TACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGCTGAT
Found at i:176159 original size:26 final size:26
Alignment explanation
Indices: 176121--176196 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
176111 CTCAACTAGA
*
176121 GAAGAGAGAGTTTCCTTTACCCCAGG
1 GAAGAGAGGGTTTCCTTTACCCCAGG
* * *
176147 GAAGATAGGGTTTCCTCTACCCTAGG
1 GAAGAGAGGGTTTCCTTTACCCCAGG
*
176173 GAAGAGAGGGAATTTCCTTCACCC
1 GAAGAGAGGG--TTTCCTTTACCC
176197 TAGCTAAGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 31 0.76
28 10 0.24
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
GAAGAGAGGGTTTCCTTTACCCCAGG
Left flanking sequence: Indices 175621 -- 176120
TTAGTTGAATTCAGGACGTCTTGGATGTAATCCTAACTAGGAAACTCGTGAAGGAATTAAAAGGG
CGCACCCATTTCTACAGTGCACGACAATTTCATAACCCTTAAAAGGGCTGATTCCAGTGTCCTCA
ACAGCGGTTCTAATTGCCATCAGCAGTGCTTATCAGTCGACGTTGAATCAGTTCCCAAGCACCGG
AAGAGAAAGCCTCCCCTTCCCTTTCCTTTACCCGCTGGGAGAGGTATCTCTCGTCTTCTTGGAGT
TATCGTCCCATCCTCTCGTCTAATTGTCCAATCTCTCGTCTTACCGTCTGATTACCGTCCGATTG
TCTGCTGGAGGGGAGTTTGCTCTACCCAGCGGGAAGAGAGAGAAGGGAAGGAGAGGTTTCCTTTC
CCTTAGCTAGGGAAGAGGGGTTTCCTTTCCCGAGGGAAGGAAAGTTTCCCTTCCCTGCCGCTAGA
GGTTTCCTCTCCCTGCCGCTAAAGGTTCCCTCTCCCTCAACTAGA
Right flanking sequence: Indices 176197 -- 176696
TAGCTAAGGAAGAGAGTTTCCTTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCAGCCCTAC
AGAGGCCTTGTTTCGGGAGCAAGCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAA
CCCAAACATCGCCTACAAGGCCGAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACA
GTTTCGGTTCCACCAGTGCCAAGTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGA
AGAAAGGGAAGGTCCTTTCCCTTAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCC
AGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGG
AAGGAAGTACCGGGGAATGGGCTGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGG
TAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGT
Found at i:176556 original size:24 final size:26
Alignment explanation
Indices: 176522--176586 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
176512 AGAGAGTTCC
176522 AGGGAAGAGAGGGTTTCCTCTACCCT
1 AGGGAAGAGAGGGTTTCCTCTACCCT
176548 AGGGAAGAGAGGGTTTCCTCTACCCT
1 AGGGAAGAGAGGGTTTCCTCTACCCT
176574 AGGGAAGAGAGGG
1 AGGGAAGAGAGGG
176587 AAGGAAGTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.37, T:0.18
Consensus pattern (26 bp):
AGGGAAGAGAGGGTTTCCTCTACCCT
Left flanking sequence: Indices 176022 -- 176521
GAAGAGGGGTTTCCTTTCCCGAGGGAAGGAAAGTTTCCCTTCCCTGCCGCTAGAGGTTTCCTCTC
CCTGCCGCTAAAGGTTCCCTCTCCCTCAACTAGAGAAGAGAGAGTTTCCTTTACCCCAGGGAAGA
TAGGGTTTCCTCTACCCTAGGGAAGAGAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTC
CTTCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGC
AAGCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGG
CCGAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCC
AAGTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCC
CTTAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCC
Right flanking sequence: Indices 176587 -- 177086
AAGGAAGTACCGGGGAATGGGCTGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGG
TAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGG
TAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTCCTGTCGGAGGACCAACTCCCCCCACTCCCCTCCTCCCTTCGGT
CGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTC
GGAGTTGTCCTCCGGACCCTTCATATAGAATTGGCACTACCGGGGGAAAGGAGGCGAGGCCAAGT
GAGGGCGCACCCCACCTCTTCTTCATGGGAGGCGAGGCAAAGGGA
Found at i:176692 original size:34 final size:34
Alignment explanation
Indices: 176654--176868 Score: 180
Period size: 34 Copynumber: 6.5 Consensus size: 34
176644 CCTCCCGGTA
176654 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
176688 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
* **
176723 GGTCGGAGTTGTCCTC-CTGTCG-GAGGACCAAC-TC
1 GGTCGGAGTGGTCCTCACT-TCGTTCGGACC--CTTC
** ** * ** * ** *
176757 -CCCCCACTCCTCC-CAC-TC-CTC---CCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
176784 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
176818 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TC
*
176853 GGTCGGAGTTGTCCTC
1 GGTCGGAGTGGTCCTC
176869 CTGTCGGAGG
Statistics
Matches: 140, Mismatches: 26, Indels: 29
0.72 0.13 0.15
Matches are distributed among these distances:
27 1 0.01
28 8 0.06
29 3 0.02
30 2 0.01
31 4 0.03
32 1 0.01
33 7 0.05
34 76 0.54
35 37 0.26
36 1 0.01
ACGTcount: A:0.11, C:0.35, G:0.27, T:0.27
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 176154 -- 176653
GGGTTTCCTCTACCCTAGGGAAGAGAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTCCT
TCTCATTCCCTGCCTCTCAGCATCGCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGCAA
GCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCC
GAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAA
GTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCT
TAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTA
CCCTAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGC
TGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 176869 -- 177368
CTGTCGGAGGACCAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTC
ATATAGAATTGGCACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCT
TCATGGGAGGCGAGGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAA
GGCCCCCTGCCCCCTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTC
TTGTTTTCCCAAGAAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCT
TACAGGCTCGCTTCGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTC
TTTTCGATGACACCTAGCAATGGGTTTTCTCCACTGGCAGCACTT
Found at i:176845 original size:130 final size:130
Alignment explanation
Indices: 176612--176944 Score: 613
Period size: 130 Copynumber: 2.6 Consensus size: 130
176602 AATGGGCTGA
176612 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
1 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
176677 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
66 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
176742 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
1 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
176807 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
66 TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
* *
176872 TCGGAGGACCAACTCCCCCCA---CTCCC-CTCCTCCC-TTCGGTCGGAGTGGTCCTCACTTCGT
1 TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
176932 TCGGACCCTTCGG
66 TCGGACCCTTCGG
176945 CCTTTAGGCA
Statistics
Matches: 201, Mismatches: 2, Indels: 5
0.97 0.01 0.02
Matches are distributed among these distances:
125 37 0.18
126 8 0.04
127 5 0.02
130 151 0.75
ACGTcount: A:0.11, C:0.39, G:0.25, T:0.25
Consensus pattern (130 bp):
TCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTG
Left flanking sequence: Indices 176112 -- 176611
TCAACTAGAGAAGAGAGAGTTTCCTTTACCCCAGGGAAGATAGGGTTTCCTCTACCCTAGGGAAG
AGAGGGAATTTCCTTCACCCTAGCTAAGGAAGAGAGTTTCCTTCTCATTCCCTGCCTCTCAGCAT
CGCCCCATCGCCAGCCCTACAGAGGCCTTGTTTCGGGAGCAAGCAATTGATGATGGCGGGCCCGC
ACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCCGAAAGCAAGAGCTATAGCAATTC
CAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAAGTTATTCTGTGCCAGGAGCCCCC
CTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCTTAGCTAAAGAAGAGAGTTTCTTT
CCCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGTTTCCT
CTACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGCTGA
Right flanking sequence: Indices 176945 -- 177444
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTCATATAGAATTG
GCACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCTTCATGGGAGGC
GAGGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAAGGCCCCCTGCC
CCCTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTCTTGTTTTCCCA
AGAAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCTTACAGGCTCGC
TTCGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTCTTTTCGATGAC
ACCTAGCAATGGGTTTTCTCCACTGGCAGCACTTAGCAATGGATTTTCTCCACAGCATTCAAATG
GAAACTCTCCACAGCATTCGAATGGAAACTCTCCAAAGAGGAACC
Found at i:176881 original size:34 final size:34
Alignment explanation
Indices: 176784--176881 Score: 119
Period size: 34 Copynumber: 2.9 Consensus size: 34
176774 CCTCCCGGTA
**
176784 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
**
176818 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCT-TC
*
176853 GGTCGGAGTTGTCCTC-CTGTCG-GAGGACC
1 GGTCGGAGTGGTCCTCACT-TCGTGAGGACC
176882 AACTCCCCCC
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
34 39 0.66
35 20 0.34
ACGTcount: A:0.10, C:0.31, G:0.32, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
Left flanking sequence: Indices 176284 -- 176783
GCAATTGATGATGGCGGGCCCGCACGTGTCAGGCACTTCACAACCCAAACATCGCCTACAAGGCC
GAAAGCAAGAGCTATAGCAATTCCAACACTTTCGGCACCAACAGTTTCGGTTCCACCAGTGCCAA
GTTATTCTGTGCCAGGAGCCCCCCTTTCCCGGGAAAGAAGGGAAGAAAGGGAAGGTCCTTTCCCT
TAGCTAAAGAAGAGAGTTTCTTTCCCCTAGGGAAGAGAGTTCCAGGGAAGAGAGGGTTTCCTCTA
CCCTAGGGAAGAGAGGGTTTCCTCTACCCTAGGGAAGAGAGGGAAGGAAGTACCGGGGAATGGGC
TGATCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTC
CTGTCGGAGGACCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 176882 -- 177381
AACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCC
TTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTCATATAGAATTGGC
ACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCTTCATGGGAGGCGA
GGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAAGGCCCCCTGCCCC
CTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTCTTGTTTTCCCAAG
AAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCTTACAGGCTCGCTT
CGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTCTTTTCGATGACAC
CTAGCAATGGGTTTTCTCCACTGGCAGCACTTAGCAATGGATTTT
Found at i:177400 original size:24 final size:24
Alignment explanation
Indices: 177381--177434 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
177371 CAATGGATTT
177381 TCTCCACAGCATTCAAATGGAAAC
1 TCTCCACAGCATTCAAATGGAAAC
*
177405 TCTCCACAGCATTCGAATGGAAAC
1 TCTCCACAGCATTCAAATGGAAAC
177429 TCTCCA
1 TCTCCA
177435 AAGAGGAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.33, C:0.31, G:0.13, T:0.22
Consensus pattern (24 bp):
TCTCCACAGCATTCAAATGGAAAC
Left flanking sequence: Indices 176881 -- 177380
CAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGC
CTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCCGGACCCTTCATATAGAATTGG
CACTACCGGGGGAAAGGAGGCGAGGCCAAGTGAGGGCGCACCCCACCTCTTCTTCATGGGAGGCG
AGGCAAAGGGAGGGCCCAGGAAAACGCTACGCGTTTTCCTACGGGGGCCTAAAGGCCCCCTGCCC
CCTTGGTGGGTGGGGTTTAGATAAGTACAGACCGTGACTGTTTCCTCTCTTTCTTGTTTTCCCAA
GAAACCTAGAGGAGATCTACCGGTTTTTACGAGGGGTGAATGCATATGAGCCTTACAGGCTCGCT
TCGCTCGCTCTTCTCCAGGTCCTTCTGTTCCGATGAATAATCCGATACCTTTCTTTTCGATGACA
CCTAGCAATGGGTTTTCTCCACTGGCAGCACTTAGCAATGGATTT
Right flanking sequence: Indices 177435 -- 177934
AAGAGGAACCATAACGAGAAAACGGAAGTTGATGTTGGGGACGGAGATTACGAAGAAGGTGAAGT
AAAGCATTTAAGTAGCAGCAATATCAGAAATCAGAAGATCCGGGGCCCCACACCCCATATTCAGT
ATGCGGCTTTCTATTCAATTTTTCCATTGCGAGAACTTATGTGCTGGGCTAGTTTAGGGCTCGCT
TAGGGAACACTGGGAAGCGCACTTTCCAAGTCCCGGGAAGGGGTTGGGCGCACACCGCACAGGAT
ACGGTAGGAACTTATCCGGAGTGAAGGGCCTGCTAGTGCAGCACACTCAGGTGGGATGCTTTCTC
CTCCGTCTAGCGCCCACTTAGGGAATGGGATGTGCGGGCACGTGTCAGCGCGCGTATAGCGCTGG
GGCAGGCGCCTAAGCCTAGCTACGCGCGCTGAGCCTAGGCCGCCTAAGCCGAGCCTATACGGGTT
CATTAATTTAAAATTAGGGTTCATTAATTGAAAGCTATTAGGGTT
Found at i:177911 original size:21 final size:21
Alignment explanation
Indices: 177885--177951 Score: 98
Period size: 21 Copynumber: 3.0 Consensus size: 21
177875 GAGCCTATAC
177885 GGGTTCATTAATTTAAAATTA
1 GGGTTCATTAATTTAAAATTA
*
177906 GGGTTCATTAATTGAAAGCTATTA
1 GGGTTCATTAATTTAAA---ATTA
177930 GGGTTCATTAATTTAAAATTA
1 GGGTTCATTAATTTAAAATTA
177951 G
1 G
177952 TCGAATAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 21 0.51
24 20 0.49
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (21 bp):
GGGTTCATTAATTTAAAATTA
Left flanking sequence: Indices 177385 -- 177884
CACAGCATTCAAATGGAAACTCTCCACAGCATTCGAATGGAAACTCTCCAAAGAGGAACCATAAC
GAGAAAACGGAAGTTGATGTTGGGGACGGAGATTACGAAGAAGGTGAAGTAAAGCATTTAAGTAG
CAGCAATATCAGAAATCAGAAGATCCGGGGCCCCACACCCCATATTCAGTATGCGGCTTTCTATT
CAATTTTTCCATTGCGAGAACTTATGTGCTGGGCTAGTTTAGGGCTCGCTTAGGGAACACTGGGA
AGCGCACTTTCCAAGTCCCGGGAAGGGGTTGGGCGCACACCGCACAGGATACGGTAGGAACTTAT
CCGGAGTGAAGGGCCTGCTAGTGCAGCACACTCAGGTGGGATGCTTTCTCCTCCGTCTAGCGCCC
ACTTAGGGAATGGGATGTGCGGGCACGTGTCAGCGCGCGTATAGCGCTGGGGCAGGCGCCTAAGC
CTAGCTACGCGCGCTGAGCCTAGGCCGCCTAAGCCGAGCCTATAC
Right flanking sequence: Indices 177952 -- 178451
TCGAATAATGAGGTGCGAGGGTCCCCCTCCCCCGGCACCCCACCCTTTTGAAGAAGAGTGCCCGC
CTGCGTGTGAGTGGGTGGGCAAGAAGAGAGAACTGCCCGCGCCAATAGTTGTGGTTTAGTGGCGC
TATTTAAGTGCGCCAGCGGAAGCGTAAAGAACCTTTCATTGAATTTCATTGAAAATGAAATTTCT
TACTGCTGGGGCGAACTCTGCTGGGACTGAAACTGAAACTACAGCTGCTTCTGCTGCTGGGGCTA
CTGAAACTGCTGCATCGGAGAAACTGGCTACTCGCTACGTGGGAAAAGGCATCGACCTCATTTTC
CCGGCACCCCATGAATGGATTCTCAAACATTTTCCATAACCCCATTTCCAACTCCTCTTTAAAGG
CGGAATCATTTGTTGTCCCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACC
CTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCCCG
Found at i:179351 original size:69 final size:69
Alignment explanation
Indices: 179206--179343 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
179196 ACCCTAAGAT
* *
179206 GGTCCTTTCTTCCTATTAGAAAGCTCCTTACACCTTTTGGCTAACTGTTTCAAGGCTGCTTGTTG
1 GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
179271 ATCC
66 ATCC
179275 GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
1 GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
179340 ATCC
66 ATCC
179344 TTGCCTTTAC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38
Consensus pattern (69 bp):
GGTCCTTTCTTCCTATTAGAAAGCTCCCTACACCTTTTGGCTAACTGTTCCAAGGCTGCTTGTTG
ATCC
Left flanking sequence: Indices 178706 -- 179205
GAAGCACTTTAAAGTTCTATATACGAAATTATTTCGATTAATGAACAGGGATTCTTCGAATCCCT
TTTAAAACTAAAGTAACTTAGGCTTTCGTTAATTTACGATACTTTTAAAAGGTTAAAATTAAAGA
TCGTAAATTAACGAAAGCCTAAGTTACTTTAGTTTAATTTCATTGAAAATTAAGTTACTTAGGCC
AGGGCTACACGTTTGAAGCCCTTCGGAGGCTGAAGGCGAATACTACCCGAGTCTCTGCTTTCCCC
TCCCGCCTCTGCCCCGCGCTAACCTCTTGCCCATCTGAAGGAGAGGGAAATAGGCCACCCAGTGA
GGCAAGGGCATACAAGTCTTACCACTGCCATTTTTGAAGGCCTTTCCCTGCACTGTTCCTATATA
CATACGCAATTCGGGCGAGCGTAGCGAGCCACTTACCCCCGATAGGGGGTAAGGGTCCTGTGAGA
TGGTTCTGTAAGATGCCGTATGCGGCTAGAGGTCTACCCTAAGAT
Right flanking sequence: Indices 179344 -- 179843
TTGCCTTTACTTTTAGCTGGAGCTAGTAGTTTTGAAACACTCTCGAGTGAGTACCTTAATAAGGA
TCGAAAAAAACTTAATTGAAGAGGCGGTGAAATTCTCATTCAATAGCAGGCAGTCAGACGATCAT
TCGTTTGAATTCAATAGCAAAGGTCACTCAGTCAATTCTCGGTTAGAGAGGGCAGGGCGCCTAAG
GGAAATATAGGCGACTTAGACGCCCTAGTAGGCGTTTTTTAGGCCCCAAAGAGCGTTGAAGGCAG
GCGAAACCCCTAGGGAATTTAATTGAATTTAAACCACCCTCCCTCCTCAAGGCATTCGGGAAAGA
TGCGTTAAGGGCTTGCGTCTTAGTCTGGCCACCCCGCCGAAGCAGACGCAAAGCGGCTTAACCTA
TAGAGACACTCCTAGGGACCTGTAGGAGGTCTAGAGCGCTAGCAAGCAGTGTCGAGGCTCGGGAA
TGCTAGCCACTTAGCTAGCATCGCCTGATTGAGAGTATTTCATTG
Found at i:186995 original size:37 final size:35
Alignment explanation
Indices: 186945--187048 Score: 147
Period size: 37 Copynumber: 2.9 Consensus size: 35
186935 AAGCACCTAA
186945 GTTACTTTAATTTAATTTCATTGAAAATTAAAGTGGG
1 GTTACTTTAATTTAATTTCATTGAAAATTAAAGT--G
186982 GTTACTTTAATTTAATTTCATTGAAAATTAAAGTG
1 GTTACTTTAATTTAATTTCATTGAAAATTAAAGTG
* ** *
187017 G-TACTTTAATTTCATTGAATTTAAAATTAAAG
1 GTTACTTTAATTTAATTTCATTGAAAATTAAAG
187049 CAACTTTAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
34 27 0.43
35 2 0.03
37 34 0.54
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (35 bp):
GTTACTTTAATTTAATTTCATTGAAAATTAAAGTG
Left flanking sequence: Indices 186445 -- 186944
CCCCAGTGATGGGTAGGAGACCCCAGTGTAGGTCCCCAGGGTGGGTAGGACACACCTACTAGTAG
GTAACCCAATGCGGTGTCAGTGTGGCCCCTAGTAGGTAGGGGGTAGACCCCCACCCAACCATCTA
CGGGGCAGCCCCATCTCAAAAAACTCTTTCTCTTGGAAAGCGATCTATCTGCGGGCTGTAGTCGG
ATTATTTATTTACCAGTGCTTCCAGAGGTAAATTGGCTATAGAGAGGGATTCTTTTCTAGTAGAG
CTTCCAATTATGACTAGTGGACTGGGACGGACTCTCGACAATTCGCTTCCATAATTGCCTAGACA
ACGAGGAGACGCCCGGCCCCTAGCGGCCTGTGGAAGGAGTGGGTGGTACTTTCTCGGCAACCAGC
CAAGCCTTTCTTCCTTCCTGAAGCGCAGACTGAGGCTAGCAAGGTTTGCTTTAATTTTAAATTCA
ATGAAATTTCAGTAATTTAATTGAATTTAAAATTAAAGCACCTAA
Right flanking sequence: Indices 187049 -- 187548
CAACTTTAAAGTAAAGTGAAGCGCTTCCAATTCGTAGCGCATGGGCGGGTCTAACTCACCTCTAG
AAAAGGATGGTACACCCTAACAGGCCTTGGCACCGGGACCAGTCTTAAGTGGGTGGGGAGTTATC
GACCCCTCACCAATTCCATTCCATAGTACAGTAGTCGATCCGGGGCGCGAGCGCCCCACCATCAA
AACCTTGAAAGCGCGTAGCGCAAAGAACACTCGTGGCGAAGCGCGTAGCGCAAGGATTGCTTTTT
CTTCCCCAGCCCTTGAACGATTTCGATCGGAGGGACGGGTCTCCGATGAATATCGGGCACCAGGA
TGAATTAACGTCCTAATCGGGCGTTTCCACATATTTCTCCACAGGGCACTAACCTTCACGATCTT
TCGGAAGGAACCCATTCCGATGGACTAATCGCAGACGGGGAACCGAGCAGATAGAGGCCCGTAAG
TCTCTGATCCGATGTGCACTGCTCAGGTGGATAGGTAAGAACGCT
Found at i:188837 original size:79 final size:79
Alignment explanation
Indices: 188706--188852 Score: 294
Period size: 79 Copynumber: 1.9 Consensus size: 79
188696 GGGTGTAGGC
188706 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
188771 AGTGGTCCTTCGGA
66 AGTGGTCCTTCGGA
188785 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
1 CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
188850 AGT
66 AGT
188853 TGCCCTCCTA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.13, C:0.37, G:0.22, T:0.28
Consensus pattern (79 bp):
CCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGG
AGTGGTCCTTCGGA
Left flanking sequence: Indices 188206 -- 188705
TAGCTAATTCTCCCTTTTTTGAGTGAAAACTGGACTTTTTAAAGGCCTTTGAAACTATCATTATT
TCACATAATTCAGGAACTTCCGAAATGTGGGTATGATTAAGTTTTAATAACAAATCCTGGCGCAG
TACATTCTCGTAGTGAAAACGGAGTATACTTGGAGTAAACATAAGTAGGCTTTTTTCTGGCTGTT
TGTGAATCGGTCGTCGGATGGAATCCACATTTTGTTTCTAGCTGAATCCATACATCCTCGTTCTG
CCCTTTCAACAGGAAGGGGCTGAAGCCGGTTATCATTGATCAATAATCCCGCCCCGCATAGTCCC
ACCCACTTCATGGATGGTGGTGGGGACGGGAGTGTTGGCCTGCCGGCCGAGGCTGGCCCGGAAGG
GCCCGGGGGGGGCCGGAGGCCCCCCACCCCTTTATGAAGTTCCAAAAGATCCAACCGCCAGGTAA
GGGAAAGCGCGTGGCTAGGCAGAATGGTTGTTCCGGGGTGTAGGC
Right flanking sequence: Indices 188853 -- 189352
TGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGC
CCTTAAGTGATCCTTTCTATATACGTGAACTCCCCATCTCTTCCGCCTTTTCTAGAGCACACAAA
AATCGGTGGGTAGGGAGTTGGACTTTAGCCTTAGGGGCCTAAAGCCCACTATAGTGCAACGCAAT
TCGAATGACGTTTCTGATTGAGGAAGGCATCTCCCTCCTAGGCATCCTATACATCCCATATCCCA
TCCCCTACCTCCATCCGAATGCTCGAACGAGGGTCCGATAGGACAACTCCGACCGTAAGAACCTT
TAATTTAAATTAAATTAAATTAAAGTAACCCCTTTAAATAAATAAAGGGTTGGTTTAAAATTAAT
TGAATTTAATTCATACAACTCCTCCTGGGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTC
TTACGGTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTTGCC
Found at i:189959 original size:33 final size:36
Alignment explanation
Indices: 189932--190003 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 36
189922 TTAAAAGAAC
189932 CTTGAATTTTCAATGAAATTAAATT-AAAGTAACCCCTA
1 CTTGAATTTTCAATGAAATTAAATTAAAAGTAA--CC-A
189970 CTTGAATTTTCAATGAAATTAAATT-AAAGTAACC
1 CTTGAATTTTCAATGAAATTAAATTAAAAGTAACC
190004 GCGGGCACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 2 0.06
38 32 0.94
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (36 bp):
CTTGAATTTTCAATGAAATTAAATTAAAAGTAACCA
Left flanking sequence: Indices 189432 -- 189931
GGATCAATTCCTTCAATCAGCAAAACAGCCCTATAAGTCCTTCCGCAGGAGGAAGAAAATAAAGC
AGCCTTGCTACTACTTCCGCTGTCGAGTTTTAAAATGAATTGAATTTAATTTGAAAAAAATGCTC
TTTATTTACTTTAGTTTAATTTCATTGAAAATTAAAGCAACATTCACTTAATTTTCAATGAAATT
AAATTAAAGCCTTTAAAGGACATTTTAAATTAATTGAAAATTAGGCAAAGAGGAAGAAAAAATCA
GCTATTAGTGCTTCAATCCTTAACGCATTCTAACGGGGGCGGGTCTGGCACTGAATTCGATGGGT
CTTACTCTGACTCACCCTGGCCGGCAGCCCTTCAACCCCTCTTGCCCGGGAGGCCAGCCAGTCCC
TTAGTCCCCCACTGGCGTATGTTAGGATCAGCCTTCTCCGCGGCAAGGCGCTTCAGCATTTTAAG
TGAAGGAGAAGCGTTTTCTGTATTTTAAGTTGCCTTTAAAAGAAC
Right flanking sequence: Indices 190004 -- 190503
GCGGGCACCCGCGTGTTTCTCGAGTGAACGACAGACTGAACCTATCAGTGAAAAGAGATTGGGTT
TTCCTAGAGGTACCGCCTTCTCAGCTCCCTCCAGCAGAGCAGCAGCCATCCCAGCAGACTGAGGT
GCCACAGCTTCCAAAGTCTCCATCGGCAGAGCAGCAGCCCTTTAGCGGTACACCCGCGAGAAGGA
TTCCAAGGTACGGGAGCCAGTTGAGCTGCCGTCACTGCCAGTCAAGAAGAAGGAACCGCCATAGC
GGATAGGCAAGGCCCGAGTTAACTGAGAGTAGAATTTTCTTCCTATATACGGCGTGAATTGCTAG
CCTTCCAAACCTCTTTCGGGATGGAAAAGGAGCCAACCAATCAAAGATCTCTCTGACCCCTTTTA
AAAGTCCGAGAAAGAATTACTGTTGTGTGGTCAACAATAATTCTAAATATGCGATGTCTCTTTAG
AAGCCACTAATAAATCCCTACATCAGTAATTCACGAGACCTCAGC
Found at i:191134 original size:9 final size:9
Alignment explanation
Indices: 191120--191155 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
191110 TATCGGACCA
191120 ACTCCTCCC
1 ACTCCTCCC
*
191129 ACTCCTCCA
1 ACTCCTCCC
191138 ACTCCTCCC
1 ACTCCTCCC
191147 ACTCCTCCC
1 ACTCCTCCC
191156 TTCGGTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.14, C:0.64, G:0.00, T:0.22
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 190620 -- 191119
TTAAAAGTCACAGTGTGCCTTTTAAAAATTCCTTGGACCAGCTCTTTAAAGGTCCGGCAAGCGTA
GGACAACGAACGTTATGGTGGCGCCCGGCCAGGGGAGCTATCATGCGGTTTCTTGGGATCCTGAC
CCGCATACCTTCATTAGTCCTGCCGGGACGACCAATGGGTGGTTTGGAAGACATTAAGACCTTCT
GTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAACCGGTTTGCCAGGGCAACTGCCAGCCCTA
TGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCGCATGCTCCGTAAGGTGGCATTAACGTCC
AGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAACCTAGGACGCCCTTTAAACCCCTTTAAA
GAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTTGTCC
TCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTATCGGACCA
Right flanking sequence: Indices 191156 -- 191655
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGA
GGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTATCGGTCGGAGTTGTCCTTCTGTCGGAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGCT
ATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAAATCATGTATACACGATCTTTTAAAGGCA
CTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTCCTGCACACCCTTTTCAAGGGGCTGTTGG
GTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCGCTAAGCTGGGCCCCCGTCGTCAACCTAA
GCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTGGGACTAGC
Found at i:191140 original size:18 final size:18
Alignment explanation
Indices: 191117--191154 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
191107 TCCTATCGGA
191117 CCAACTCCTCCCACTCCT
1 CCAACTCCTCCCACTCCT
191135 CCAACTCCTCCCACTCCT
1 CCAACTCCTCCCACTCCT
191153 CC
1 CC
191155 CTTCGGTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.63, G:0.00, T:0.21
Consensus pattern (18 bp):
CCAACTCCTCCCACTCCT
Left flanking sequence: Indices 190617 -- 191116
CTTTTAAAAGTCACAGTGTGCCTTTTAAAAATTCCTTGGACCAGCTCTTTAAAGGTCCGGCAAGC
GTAGGACAACGAACGTTATGGTGGCGCCCGGCCAGGGGAGCTATCATGCGGTTTCTTGGGATCCT
GACCCGCATACCTTCATTAGTCCTGCCGGGACGACCAATGGGTGGTTTGGAAGACATTAAGACCT
TCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAACCGGTTTGCCAGGGCAACTGCCAGCC
CTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCGCATGCTCCGTAAGGTGGCATTAACG
TCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAACCTAGGACGCCCTTTAAACCCCTTT
AAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTTG
TCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTATCGGA
Right flanking sequence: Indices 191155 -- 191654
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGAC
CCTATCGGTCGGAGTTGTCCTTCTGTCGGAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGC
TATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAAATCATGTATACACGATCTTTTAAAGGC
ACTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTCCTGCACACCCTTTTCAAGGGGCTGTTG
GGTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCGCTAAGCTGGGCCCCCGTCGTCAACCTA
AGCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTGGGACTAG
Found at i:191260 original size:64 final size:64
Alignment explanation
Indices: 191159--191322 Score: 319
Period size: 64 Copynumber: 2.6 Consensus size: 64
191149 TCCTCCCTTC
*
191159 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
191223 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
191287 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGG
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGG
191323 TCGGAGTGGT
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 99 1.00
ACGTcount: A:0.14, C:0.29, G:0.32, T:0.26
Consensus pattern (64 bp):
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 190659 -- 191158
AGCTCTTTAAAGGTCCGGCAAGCGTAGGACAACGAACGTTATGGTGGCGCCCGGCCAGGGGAGCT
ATCATGCGGTTTCTTGGGATCCTGACCCGCATACCTTCATTAGTCCTGCCGGGACGACCAATGGG
TGGTTTGGAAGACATTAAGACCTTCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAACCG
GTTTGCCAGGGCAACTGCCAGCCCTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCGCA
TGCTCCGTAAGGTGGCATTAACGTCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAACC
TAGGACGCCCTTTAAACCCCTTTAAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCCAA
CTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTATC
GGACCAACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 191323 -- 191822
TCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCTGTCGGAGGACCCTT
ACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAA
ATCATGTATACACGATCTTTTAAAGGCACTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTC
CTGCACACCCTTTTCAAGGGGCTGTTGGGTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCG
CTAAGCTGGGCCCCCGTCGTCAACCTAAGCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTG
GGACTAGCACCCCTACTTCACTGCCCTCTGAGGTCCCCAGGCTTCCTCCCTTGTAAGCTAACTCG
TAGCAGAGCAAGAGAGCAAGCCAGCTGTAGGTCAGAGAGAGGGGATTTGATATGCATCGTGGCCC
AGTGGAAAGTCCGCGGACCAATCCAATCGTACGGGTCAAGCGCTA
Found at i:191335 original size:34 final size:35
Alignment explanation
Indices: 191287--191370 Score: 152
Period size: 34 Copynumber: 2.4 Consensus size: 35
191277 ATAGGGAGAG
191287 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCT-TC
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATC
*
191321 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATC
191356 GGTCGGAGTTGTCCT
1 GGTCGGAGTTGTCCT
191371 TCTGTCGGAG
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 31 0.66
35 16 0.34
ACGTcount: A:0.10, C:0.30, G:0.30, T:0.31
Consensus pattern (35 bp):
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATC
Left flanking sequence: Indices 190787 -- 191286
GGTGGTTTGGAAGACATTAAGACCTTCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAAC
CGGTTTGCCAGGGCAACTGCCAGCCCTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCG
CATGCTCCGTAAGGTGGCATTAACGTCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAA
CCTAGGACGCCCTTTAAACCCCTTTAAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCC
AACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTA
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 191371 -- 191870
TCTGTCGGAGGACCCTTACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCAAAATGGGC
ACTAATTGTACCAAAAAATCATGTATACACGATCTTTTAAAGGCACTTTAAAAAAGGGCTTAGAC
TCATTTCAATCACACTCCTGCACACCCTTTTCAAGGGGCTGTTGGGTGTGGCCTTGTCAATGATC
CTCTACTCTCGATCTCGCTAAGCTGGGCCCCCGTCGTCAACCTAAGCTCCACGGCTGGTTCCATC
CCCCAATCCTTGGTCTGGGACTAGCACCCCTACTTCACTGCCCTCTGAGGTCCCCAGGCTTCCTC
CCTTGTAAGCTAACTCGTAGCAGAGCAAGAGAGCAAGCCAGCTGTAGGTCAGAGAGAGGGGATTT
GATATGCATCGTGGCCCAGTGGAAAGTCCGCGGACCAATCCAATCGTACGGGTCAAGCGCTACGC
TAGCCCCCCACCCTTTAGGTACAACGGTTTCACTCGGTCTTTCGA
Found at i:191384 original size:34 final size:34
Alignment explanation
Indices: 191287--191387 Score: 107
Period size: 34 Copynumber: 3.0 Consensus size: 34
191277 ATAGGGAGAG
* **
191287 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
**
191321 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTGAGGACCCT-TC
* *
191356 GGTCGGAGTTGTCCT-TCTGTCG-GAGGACCCTT
1 GGTCGGAGTGGTCCTCACT-TCGTGAGGACCCTT
191388 ACCCCCTATC
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
33 1 0.02
34 40 0.67
35 19 0.32
ACGTcount: A:0.10, C:0.30, G:0.30, T:0.31
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTGAGGACCCTTC
Left flanking sequence: Indices 190787 -- 191286
GGTGGTTTGGAAGACATTAAGACCTTCTGTCCTATAAGGCTGCCTCTCTGATTCATTGAATCAAC
CGGTTTGCCAGGGCAACTGCCAGCCCTATGAGGGTCTTCTTCTATATACAATTCGAACTTCTTCG
CATGCTCCGTAAGGTGGCATTAACGTCCAGCCGGGGGAGCAATACCCCGGGAACCAGAAGGCAAA
CCTAGGACGCCCTTTAAACCCCTTTAAAGAGAATAAACGGGGGCACTTTAAAGGCCAACTCCTCC
AACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTA
TCGGACCAACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 191388 -- 191887
ACCCCCTATCGGGGGTAAGTGGCTCGCTATCGCTCGCCCAAAATGGGCACTAATTGTACCAAAAA
ATCATGTATACACGATCTTTTAAAGGCACTTTAAAAAAGGGCTTAGACTCATTTCAATCACACTC
CTGCACACCCTTTTCAAGGGGCTGTTGGGTGTGGCCTTGTCAATGATCCTCTACTCTCGATCTCG
CTAAGCTGGGCCCCCGTCGTCAACCTAAGCTCCACGGCTGGTTCCATCCCCCAATCCTTGGTCTG
GGACTAGCACCCCTACTTCACTGCCCTCTGAGGTCCCCAGGCTTCCTCCCTTGTAAGCTAACTCG
TAGCAGAGCAAGAGAGCAAGCCAGCTGTAGGTCAGAGAGAGGGGATTTGATATGCATCGTGGCCC
AGTGGAAAGTCCGCGGACCAATCCAATCGTACGGGTCAAGCGCTACGCTAGCCCCCCACCCTTTA
GGTACAACGGTTTCACTCGGTCTTTCGAGTGTGTAGGCAGTTCCT
Found at i:198727 original size:34 final size:34
Alignment explanation
Indices: 198666--198857 Score: 357
Period size: 34 Copynumber: 5.6 Consensus size: 34
198656 AAGGGTCCGA
*
198666 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGA-AGGGTCCGAACGAAGTG
*
198701 AGGACAACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
198735 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
198769 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
198803 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
198837 AGGACCACTCCGACCGAAGGG
1 AGGACCACTCCGACCGAAGGG
198858 AGGAGTTGGA
Statistics
Matches: 156, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
34 139 0.89
35 17 0.11
ACGTcount: A:0.30, C:0.29, G:0.32, T:0.09
Consensus pattern (34 bp):
AGGACCACTCCGACCGAAGGGTCCGAACGAAGTG
Left flanking sequence: Indices 198166 -- 198665
TAGCAATTATGCTTGCTATGGGCTTACAGCACTCGACCGATTCACGGCGGGTCGAGTGCCGTCTT
CATCTCCGGGAGAGGGGATAGTATTACTTGTTTCTGATAGATCGCTGCGCTCGATAGCTCGCTAT
AGGTTCATCCCGATACCCTACTAGGTTTCACTAGCGGTGCCCTCTAGGCAAACTTTCAGAGAAAA
CAAGGTGGCACACTAATTTACAATTAAATTAAATTAAAGTAAATTTAGCCTAAAGAGATTCCTTT
TCCCGCGTCCTTGTGACCCATTGATCAATAATCGGGAAGAGAACCCAGGAAGAAAAAGCTGGAAT
AAGCAGAAATTCAATACGGAGATTAAATAAGAAGAAAAGGGTGTATAGCTCAGTCGGTAGAGCAC
CTGCCTTACAAGCAGGGAGTCATAGGTTCAAATCCTGTTGCGCCCAGGAACGTCGAGGGGAAAAA
GGACCCCTTTGTTGGGGTCCACACAAGGGCCTGGCAAGGGTCCGA
Right flanking sequence: Indices 198858 -- 199357
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTCGCCCTCCGATAGGAGGGCAACTCCGACCGA
TAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAGGAGTTG
GTCCTCCGATAGGAGGACAACTCCGAATTCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGAC
CTACCGGGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTACTTTTAACT
GCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCCCTCTCACTACGTTCGAGTGCCCCCTTTCAAT
AAAGTGCCCTTCTAAAAAAACTCCGAACTTTCTAGTATATGCCCTTCCAGGAAAAGTGGTGCCTG
TAGGCAGCCTGCCGGGAAGCGCTACCTGACCCATCCAGACCCTCTCCTATGGGGAACACGGCCGT
CCTCCTTTTTGTGGAAGCACTAAAGGGCTGTAAAAAAGGGCGGCT
Found at i:198868 original size:9 final size:9
Alignment explanation
Indices: 198856--198891 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
198846 CCGACCGAAG
198856 GGAGGAGTT
1 GGAGGAGTT
198865 GGAGGAGTT
1 GGAGGAGTT
*
198874 GGAGGAGTG
1 GGAGGAGTT
198883 GGAGGAGTT
1 GGAGGAGTT
198892 CGCCCTCCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.58, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 198356 -- 198855
GAAAACAAGGTGGCACACTAATTTACAATTAAATTAAATTAAAGTAAATTTAGCCTAAAGAGATT
CCTTTTCCCGCGTCCTTGTGACCCATTGATCAATAATCGGGAAGAGAACCCAGGAAGAAAAAGCT
GGAATAAGCAGAAATTCAATACGGAGATTAAATAAGAAGAAAAGGGTGTATAGCTCAGTCGGTAG
AGCACCTGCCTTACAAGCAGGGAGTCATAGGTTCAAATCCTGTTGCGCCCAGGAACGTCGAGGGG
AAAAAGGACCCCTTTGTTGGGGTCCACACAAGGGCCTGGCAAGGGTCCGAAGGACAACTCCGACC
GATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 198892 -- 199391
CGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGAATTCCGAT
AGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGACAACTCCGACCTACCGGGAGGA
GTGGGGGGAGTTGGCAGCGCTACTTTTAACTGCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCC
CTCTCACTACGTTCGAGTGCCCCCTTTCAATAAAGTGCCCTTCTAAAAAAACTCCGAACTTTCTA
GTATATGCCCTTCCAGGAAAAGTGGTGCCTGTAGGCAGCCTGCCGGGAAGCGCTACCTGACCCAT
CCAGACCCTCTCCTATGGGGAACACGGCCGTCCTCCTTTTTGTGGAAGCACTAAAGGGCTGTAAA
AAAGGGCGGCTTCCCACACCCTTACCCTCCCTACGGCCTTTAGGC
Found at i:199064 original size:22 final size:22
Alignment explanation
Indices: 199038--199086 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
199028 CGAACGAAGT
199038 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
199060 GAGGACAACTCCGACCTACCGG
1 GAGGACAACTCCGACCTACCGG
199082 GAGGA
1 GAGGA
199087 GTGGGGGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.31, T:0.08
Consensus pattern (22 bp):
GAGGACAACTCCGACCTACCGG
Left flanking sequence: Indices 198538 -- 199037
GCTCAGTCGGTAGAGCACCTGCCTTACAAGCAGGGAGTCATAGGTTCAAATCCTGTTGCGCCCAG
GAACGTCGAGGGGAAAAAGGACCCCTTTGTTGGGGTCCACACAAGGGCCTGGCAAGGGTCCGAAG
GACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGTCCGAACGAAG
TGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACG
AAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TTGGAGGAGTTGGAGGAGTGGGAGGAGTTCGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGG
TCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCT
CCGATAGGAGGACAACTCCGAATTCCGATAGGGTCCGAACGAAGT
Right flanking sequence: Indices 199087 -- 199586
GTGGGGGGAGTTGGCAGCGCTACTTTTAACTGCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCC
CTCTCACTACGTTCGAGTGCCCCCTTTCAATAAAGTGCCCTTCTAAAAAAACTCCGAACTTTCTA
GTATATGCCCTTCCAGGAAAAGTGGTGCCTGTAGGCAGCCTGCCGGGAAGCGCTACCTGACCCAT
CCAGACCCTCTCCTATGGGGAACACGGCCGTCCTCCTTTTTGTGGAAGCACTAAAGGGCTGTAAA
AAAGGGCGGCTTCCCACACCCTTACCCTCCCTACGGCCTTTAGGCACTCGACCGATAGGGAGAGG
GTCGGGTAAGTGGCTCGCTATCGCTCGCCCGAGAGTGACAAACTGCCATAATAAAGACCAAGAAC
AGACCAGAGAGAAAGAGTCTGTGGAAGAGCAACGGAAGCTCATAGAGAAACCCTAGGGCATTGGC
TCGTTCAAAGAACTACTGCTGCTTTTTCAGTCCCAACCATTCCTA
Found at i:202945 original size:9 final size:9
Alignment explanation
Indices: 202934--203005 Score: 126
Period size: 9 Copynumber: 8.0 Consensus size: 9
202924 CTCCGGACCA
*
202934 ACTCCTCCA
1 ACTCCTCCC
202943 ACTCCTCCC
1 ACTCCTCCC
202952 ACTCCTCCC
1 ACTCCTCCC
202961 ACTCCTCCC
1 ACTCCTCCC
*
202970 ACTCCTCCA
1 ACTCCTCCC
202979 ACTCCTCCC
1 ACTCCTCCC
202988 ACTCCTCCC
1 ACTCCTCCC
202997 ACTCCTCCC
1 ACTCCTCCC
203006 GGTAGGTCGG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.14, C:0.64, G:0.00, T:0.22
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 202434 -- 202933
GTGTGTGCCGGTCTTCCTGCTTCGTCGGAAAAAGTTACTAGCTGCAGTGCATCGTCCGATCTCGC
TGGTCCTAGATCTCCTGCTAGCTCAGCCTAGACCTGCAGTAGGGCAGGGCAGCCCGGCAGGCTGA
CCGGCTCGCAAGCTCGCCCCCCTGCCCTACTAGGGCGGGTTTCCGGTTCGAAACGGTTGTTGATT
GTGTAATCTCTTCCTCCGTCCCGTGCCAGGGGGCCGCACAAGGCATGCGTTCGTCCTTCCGATGA
AGGAAAAAAGCCTAGCAGCCTTTTAAAGGCGCCAGTAGATGGATGTATCCACCACCTGATAGACC
ATGAAAAGGTTTTAGCGCATTCATCTAGGAATGCCGCCTGACGTGTTTAGAAGTGGATTCGAACC
ACTGACCCAAGGATTTTCAGTCCTTTGCTCTAACCAACTGAGCTACCTAAACTACTAGATGAATG
AAGCCCTCCCCCTCCCGGTAGGTCGGGGGAGTGTCCTCCGGACCA
Right flanking sequence: Indices 203006 -- 203505
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTT
CGGACCCTTGGGACGGGTCGAGTGGGACACAATTGTGACTAAAGCGGAAGCCGTCCCGGTTTGGT
TTGGTTTCGGTCGTTCCCGGCTCGGTCATGAATGCGTGAGCTTCTCTAGCTATCAATCGGGCCAC
CTAACTGTTTATTGGTTTTCAAGAAGATCTATATACTTCATTTTGGCTCGCAAGAGGGCCGGGTA
AAGCGCGCTAGCGCACACTTTTGCAGGGGCCGAGTCCGCATCTGAGCGGGGCCTCGAGAGGAGGG
GCCCCTTCAAATTTGCGCTTCTTCCTTTATCCTTGAAGGCGCTTT
Found at i:203042 original size:35 final size:35
Alignment explanation
Indices: 203003--203199 Score: 367
Period size: 35 Copynumber: 5.6 Consensus size: 35
202993 TCCCACTCCT
203003 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203038 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203073 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203108 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
203143 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
203178 CCCTATCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
203200 TCGGACCCTT
Statistics
Matches: 159, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 159 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 202503 -- 203002
CCTAGATCTCCTGCTAGCTCAGCCTAGACCTGCAGTAGGGCAGGGCAGCCCGGCAGGCTGACCGG
CTCGCAAGCTCGCCCCCCTGCCCTACTAGGGCGGGTTTCCGGTTCGAAACGGTTGTTGATTGTGT
AATCTCTTCCTCCGTCCCGTGCCAGGGGGCCGCACAAGGCATGCGTTCGTCCTTCCGATGAAGGA
AAAAAGCCTAGCAGCCTTTTAAAGGCGCCAGTAGATGGATGTATCCACCACCTGATAGACCATGA
AAAGGTTTTAGCGCATTCATCTAGGAATGCCGCCTGACGTGTTTAGAAGTGGATTCGAACCACTG
ACCCAAGGATTTTCAGTCCTTTGCTCTAACCAACTGAGCTACCTAAACTACTAGATGAATGAAGC
CCTCCCCCTCCCGGTAGGTCGGGGGAGTGTCCTCCGGACCAACTCCTCCAACTCCTCCCACTCCT
CCCACTCCTCCCACTCCTCCAACTCCTCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 203200 -- 203699
TCGGACCCTTGGGACGGGTCGAGTGGGACACAATTGTGACTAAAGCGGAAGCCGTCCCGGTTTGG
TTTGGTTTCGGTCGTTCCCGGCTCGGTCATGAATGCGTGAGCTTCTCTAGCTATCAATCGGGCCA
CCTAACTGTTTATTGGTTTTCAAGAAGATCTATATACTTCATTTTGGCTCGCAAGAGGGCCGGGT
AAAGCGCGCTAGCGCACACTTTTGCAGGGGCCGAGTCCGCATCTGAGCGGGGCCTCGAGAGGAGG
GGCCCCTTCAAATTTGCGCTTCTTCCTTTATCCTTGAAGGCGCTTTCGTTAAAAAAACTAACTAG
CGGCAGCTTTAATTGAAGGCGCCGCTTTGAAAGGCTCAAAAAAACACTAGCTAGCTCGCTTTGGC
ACAAAAACACTAGCTAGCTCTCGGAAGCCAAGTTGGCGCCGCTTTGAAAGGCTCAAAAACACTAA
CTAGCTAGCTAAGTAACTTAATTTTCAATTAAATTAAATTAAAGT
Found at i:203718 original size:14 final size:14
Alignment explanation
Indices: 203699--203725 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
203689 TAAATTAAAG
203699 TAACTTATGCGCTT
1 TAACTTATGCGCTT
203713 TAACTTATGCGCT
1 TAACTTATGCGCT
203726 CAAAAAACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (14 bp):
TAACTTATGCGCTT
Left flanking sequence: Indices 203199 -- 203698
TTCGGACCCTTGGGACGGGTCGAGTGGGACACAATTGTGACTAAAGCGGAAGCCGTCCCGGTTTG
GTTTGGTTTCGGTCGTTCCCGGCTCGGTCATGAATGCGTGAGCTTCTCTAGCTATCAATCGGGCC
ACCTAACTGTTTATTGGTTTTCAAGAAGATCTATATACTTCATTTTGGCTCGCAAGAGGGCCGGG
TAAAGCGCGCTAGCGCACACTTTTGCAGGGGCCGAGTCCGCATCTGAGCGGGGCCTCGAGAGGAG
GGGCCCCTTCAAATTTGCGCTTCTTCCTTTATCCTTGAAGGCGCTTTCGTTAAAAAAACTAACTA
GCGGCAGCTTTAATTGAAGGCGCCGCTTTGAAAGGCTCAAAAAAACACTAGCTAGCTCGCTTTGG
CACAAAAACACTAGCTAGCTCTCGGAAGCCAAGTTGGCGCCGCTTTGAAAGGCTCAAAAACACTA
ACTAGCTAGCTAAGTAACTTAATTTTCAATTAAATTAAATTAAAG
Right flanking sequence: Indices 203726 -- 204225
CAAAAAACGAATTGAAAGGCTTACTTTTAAAATAGCCTTTAAATTCTTCGAGAAGTTTAGTGAAA
ATTGTTTTGGCTTCGTTTAAAGAAAACAGCTAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCT
TTCGTTAAAAAAACTAACTAACTAGCGTACGCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAA
TCAGTAAAGAGGAAAATTTACTTCCTTTTCCCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCC
GGGAGCATAGCCTACTTCCTCTTGGGCTGGGCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAAT
AGGACAGGGTCGAGCTTTCTGAAAAGTATCCTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCC
AGGGAAGGCCCTACCCGTAAATCTTTGGCCTTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTG
CCCCTACCCTGCCCAAGAAGCCCGGCAGGGCGCTTGCCAACTCCT
Found at i:204274 original size:9 final size:9
Alignment explanation
Indices: 204256--204309 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
204246 CTTCGGACCA
204256 ACTCCTCCC
1 ACTCCTCCC
*
204265 ACTCCCCCC
1 ACTCCTCCC
204274 ACTCCTCCC
1 ACTCCTCCC
*
204283 ACTCCCCCC
1 ACTCCTCCC
204292 ACTCCTCCC
1 ACTCCTCCC
204301 ACTCCTCCC
1 ACTCCTCCC
204310 GGTAGGTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.11, C:0.70, G:0.00, T:0.19
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 203756 -- 204255
AATAGCCTTTAAATTCTTCGAGAAGTTTAGTGAAAATTGTTTTGGCTTCGTTTAAAGAAAACAGC
TAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCTTTCGTTAAAAAAACTAACTAACTAGCGTAC
GCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAATCAGTAAAGAGGAAAATTTACTTCCTTTTC
CCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCCGGGAGCATAGCCTACTTCCTCTTGGGCTGG
GCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAATAGGACAGGGTCGAGCTTTCTGAAAAGTATC
CTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCCAGGGAAGGCCCTACCCGTAAATCTTTGGCC
TTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTGCCCCTACCCTGCCCAAGAAGCCCGGCAGGG
CGCTTGCCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 204310 -- 204809
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCG
GACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTC
ACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGG
TCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGG
Found at i:204279 original size:18 final size:18
Alignment explanation
Indices: 204256--204305 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
204246 CTTCGGACCA
204256 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
204274 ACTCCTCCCACTCCCCCC
1 ACTCCTCCCACTCCCCCC
204292 ACTCCTCCCACTCC
1 ACTCCTCCCACTCC
204306 TCCCGGTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.70, G:0.00, T:0.18
Consensus pattern (18 bp):
ACTCCTCCCACTCCCCCC
Left flanking sequence: Indices 203756 -- 204255
AATAGCCTTTAAATTCTTCGAGAAGTTTAGTGAAAATTGTTTTGGCTTCGTTTAAAGAAAACAGC
TAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCTTTCGTTAAAAAAACTAACTAACTAGCGTAC
GCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAATCAGTAAAGAGGAAAATTTACTTCCTTTTC
CCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCCGGGAGCATAGCCTACTTCCTCTTGGGCTGG
GCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAATAGGACAGGGTCGAGCTTTCTGAAAAGTATC
CTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCCAGGGAAGGCCCTACCCGTAAATCTTTGGCC
TTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTGCCCCTACCCTGCCCAAGAAGCCCGGCAGGG
CGCTTGCCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCA
Right flanking sequence: Indices 204306 -- 204805
TCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGA
GTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGG
TCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCG
GTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGG
Found at i:204346 original size:35 final size:35
Alignment explanation
Indices: 204307--205268 Score: 1706
Period size: 35 Copynumber: 27.7 Consensus size: 35
204297 TCCCACTCCT
204307 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204342 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204377 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204412 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204447 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204482 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204517 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204552 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204587 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204622 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204657 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204692 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204727 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204762 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204797 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204832 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204867 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204902 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204937 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
204972 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
205007 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
205042 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
205077 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
205112 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** * *** * *
205147 CCC--T---TCGGCCT-TTAGGCAC-TCG-ACCGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
*** *
205174 TAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGG-TA-GGTCGGAGTGGTCCTCACTTCGTTCGGA
205211 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** * *
205246 CCCTATCGGTCGGAGTGGCCCTC
1 CCCGGTAGGTCGGAGTGGTCCTC
205269 CTATCGGAGG
Statistics
Matches: 889, Mismatches: 28, Indels: 20
0.95 0.03 0.02
Matches are distributed among these distances:
27 3 0.00
28 3 0.00
29 4 0.00
30 5 0.01
33 1 0.00
34 5 0.01
35 859 0.97
36 4 0.00
37 5 0.01
ACGTcount: A:0.12, C:0.29, G:0.34, T:0.25
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 203807 -- 204306
TTAAAGAAAACAGCTAACTAGCTCCCGGAAAGGTCGATGTAGTGGCGCTTTCGTTAAAAAAACTA
ACTAACTAGCGTACGCTCTCGTGCAGGCACGGCAAGGGAGGAAAGTGAATCAGTAAAGAGGAAAA
TTTACTTCCTTTTCCCAGCCCACCACTTTCCAACCTTGTGTTGGGCGCCGGGAGCATAGCCTACT
TCCTCTTGGGCTGGGCTTTCCCCTTGGCTGGCTAGGCGAGTGAAGGAATAGGACAGGGTCGAGCT
TTCTGAAAAGTATCCTTCCGAGGCAAGCACTATAGTGGTCTGCCGGCCCAGGGAAGGCCCTACCC
GTAAATCTTTGGCCTTACTTGCCTGGGCCCGTATAGGTCTTAGTTCTTGCCCCTACCCTGCCCAA
GAAGCCCGGCAGGGCGCTTGCCAACTCCTCCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCT
CCCACTCCCCCCACTCCTCCCACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 205269 -- 205768
CTATCGGAGGGCCCTGGGGAAGAGGATCGAGTTGGCAGGTAGCGCTACGCGCTACCGCGGGAGGT
GCTGCGCACCTCCCAGCCCTTGCAAACAGCTTGATGCACTATCTCTCTTCAACCCCCAAGCGCAC
GATGTGGCCATCCCTCACCTTCCTTTGCTTCAAACGGCGCGTTCATGTCCTTCCCCAAGCGCACG
ATGTGGCAGAAGGAACGAGTAACCTGATTCAAAGAGTGGAATGCATTAGCTGTCTGCTCTGGTTG
ACAGAAAGGGTCGGGGAGGGGCAACCACTCATTGTTAAGACCAAAGGGTTGGGCGGAAAGGAAGA
ATAGTTCCGCCGCTATTGGTTCTCCCGCAGCTCGGGAGTATCCAGCTGCAAGAATCCCAACTCGG
TGCCTTTTGAGAAGAGTTGCTCTTCGGAGAGCACGGTACGATGAAAGTTGTAGGCTGTCGGGGGG
GAGTCATCGTCCATCTAGGCCTCTACGGCAGAATCAGTCAGAGAG
Found at i:206265 original size:64 final size:64
Alignment explanation
Indices: 206164--206295 Score: 246
Period size: 64 Copynumber: 2.1 Consensus size: 64
206154 CTGAAGTGCT
*
206164 AGGGTCCGAGCGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
*
206228 AGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
1 AGGGTCCGAACGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
206292 AGGG
1 AGGG
206296 AGGAGTTGGG
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.14
Consensus pattern (64 bp):
AGGGTCCGAACGAAGCGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGA
Left flanking sequence: Indices 205664 -- 206163
TTTGAGAAGAGTTGCTCTTCGGAGAGCACGGTACGATGAAAGTTGTAGGCTGTCGGGGGGGAGTC
ATCGTCCATCTAGGCCTCTACGGCAGAATCAGTCAGAGAGGCCTGAGAGACGGTATTTAAAGGCG
AAAGTCAGCGGTTCGAATCCGCGTACTGTCTCCAGCCCGTGATCCGATTCAATACAATGGTATAG
GATAGGGATGAAACAATCTCGATTTCATCTTGTATTTATGGACGTTGGTAAGATCGAGGCATTTA
AAAGATGATGGCATAGCTCTTTAATGGCGAGGTTCAAACGAAGAAGGGCTTATGGTGGCGTCGGC
ACCCAGAGACGAAGAAGGGCGTAGCAATCGACGAAATCTTCGGGGAGCTGAAAACAAGCATAGAT
CCGGTCCCGAATAGGGCCTTCGAACTGCCACTGAATTCATAGGCAGGCAAGAGACAACCTTAGAA
CTGAAACATCTTAGTAGCCAGAGAAAAAGGAAGCGCTGAAGTGCT
Right flanking sequence: Indices 206296 -- 206795
AGGAGTTGGGGGAGTTGGGCAGCTAGAGCGAAATGGGAGTAACCTAAACCGCGAAAACGGTGTTG
TGGGGGAGCGATACGAGCTTTGTGCTGCGGCGGTGAAGCGGTTGAGTCCCGCACCCCAGATGGTG
AGAGTCCATACGCCGAAAGCATCACTGGCTCACGCTCTAACCCGAGTACGCATGGGAGTGGAATC
CCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGTACTAC
CAGTACCGTGAGGGAGAGGTGGAAAGAACCCCCATCATCGGGGAGTGAAATAGCACATGGAACCT
ACAGCTCCCAAGCAGCAGTGGGAGGAGAATCGGATCTCTGACCTGCCTGTTGAAGAATGAGCCGG
CGACTCATAGGCTTTAAAGGCCTGGTTGAGGAAACCCACCACCGGAGCCATAGCGAAAGCGAGTC
TTCCCAGGGCAATTGTCACTGCTTATGGACCCAACCTGGGTGATC
Found at i:208682 original size:9 final size:9
Alignment explanation
Indices: 208670--208707 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
208660 CCGACCGAAG
208670 GGAGGAGTT
1 GGAGGAGTT
208679 GGAGGAGTT
1 GGAGGAGTT
208688 GGAGGAGTT
1 GGAGGAGTT
208697 GGAGGAGTT
1 GGAGGAGTT
208706 GG
1 GG
208708 TCCGAAGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.58, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 208170 -- 208669
CACTTGTTGGGTGCCCCTCCGGCAGAAAGGAAAGCGCGGGACTCGATGTTTGAGCTGCACTCGAA
TATTTCGGTGTCTGAATTGGCACTCGCATACAATCACTCGATTTAGGCAGCTTAGCCGCCGAATA
CCGAGAGCTTATACTTACTTGATTTGGAGGAAAAGTAAAGAGCCTATTATTTCATTATACGGAGT
ATTCCGGTGAAGCTGAACTAAATTAAATTAAGTTAAATTAATTTCAGCGCTTTAATTTTCAATGA
AATTAAAGTGAATTACTTTAATTTTCAATGAAATGAAATTAGAAAATGCACTTTTTCTGTTAGGG
CCTGGCAAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 208708 -- 209207
TCCGAAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
GAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGAC
CACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCCGCCCCTGAATCGAGGAAGGATAT
TTTCACACGCCCTCGCTTCTTCGAGGCTCTCCCACCGGTTGTGCT
Found at i:208752 original size:35 final size:35
Alignment explanation
Indices: 208713--209138 Score: 816
Period size: 35 Copynumber: 12.2 Consensus size: 35
208703 GTTGGTCCGA
* * **
208713 AGGACAACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208748 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208783 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208818 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208853 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208888 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208923 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208958 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
208993 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
209028 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
209063 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
209098 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
209133 AGGACC
1 AGGACC
209139 CGCCCCTGAA
Statistics
Matches: 387, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 387 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 208213 -- 208712
CGATGTTTGAGCTGCACTCGAATATTTCGGTGTCTGAATTGGCACTCGCATACAATCACTCGATT
TAGGCAGCTTAGCCGCCGAATACCGAGAGCTTATACTTACTTGATTTGGAGGAAAAGTAAAGAGC
CTATTATTTCATTATACGGAGTATTCCGGTGAAGCTGAACTAAATTAAATTAAGTTAAATTAATT
TCAGCGCTTTAATTTTCAATGAAATTAAAGTGAATTACTTTAATTTTCAATGAAATGAAATTAGA
AAATGCACTTTTTCTGTTAGGGCCTGGCAAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGG
GTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGG
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGA
Right flanking sequence: Indices 209139 -- 209638
CGCCCCTGAATCGAGGAAGGATATTTTCACACGCCCTCGCTTCTTCGAGGCTCTCCCACCGGTTG
TGCTCGATACAACAAGCATACGCACAACACACCTTCCAAGGCAAGGCATCCACCGGTACAGGCGC
GAAGCCCCCAGAAAGAAGACACAATGCTCCTACCGTGCTTCGGCATCCCCGGCGGCGTAGACGCG
TGGTAGCAGGTAACTTCTTGATTAATTGAGCTTCACAGCTTCATCTATATACATACGCCCCTATC
CATTACTCCCCCAAAGGGGAAACACGGATCAATCCATTGTACCCTTAATGGATTGATCAATTAGG
TCACGGATTGGTCCATTAAGGGATGCATTAATTGTTTGAGAAATGACAGATCGATGGACCACCCC
TGATAGATATAACACTGGGCTCCTTGCATTCCTTTGTTCTGCTGTCTCGGTGTCTAATAGGCGTC
CTAACTTCCCGTGTAGCCCGCCACTACGATAACACCAATAACCGC
Found at i:211870 original size:46 final size:46
Alignment explanation
Indices: 211816--212133 Score: 414
Period size: 46 Copynumber: 7.4 Consensus size: 46
211806 ACCACTCCGA
211816 CCGA-AGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
211861 CCGAGAGGGAGGAGTTGG---TCCG-TAGGA---CCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
211900 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
* *
211946 CCGAGAGGGAGGGGTTGG---TCC--TACGGA---CAACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATA-GGAGGGCCACTCCGAATT
211985 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
*
212031 CCGAGAGGGAGGAGTTGG---TCC--TACGGA---CAACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATA-GGAGGGCCACTCCGAATT
212070 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
1 CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
*
212116 CCGATAGGGAGGAGTTGG
1 CCGAGAGGGAGGAGTTGG
212134 TCCGAAGGAC
Statistics
Matches: 240, Mismatches: 7, Indels: 51
0.81 0.02 0.17
Matches are distributed among these distances:
39 87 0.36
41 4 0.02
42 21 0.09
43 21 0.09
44 4 0.02
45 4 0.02
46 99 0.41
ACGTcount: A:0.23, C:0.24, G:0.37, T:0.16
Consensus pattern (46 bp):
CCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
Left flanking sequence: Indices 211316 -- 211815
CTGCGGTTGTTTCCCAACAGGGTGAATAGGCTCCGAGTCAGGATAATTGGCGTGGGTAAAGTGGA
CGTAGCGTGGAGCGCGAAGAGGCAGAAGAAAGGGGCGGAGCCGGCCGCTTCGCGGCCCGAATCAA
TATTGATTTGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGGGGGCCTCCGGCCCCCCCACCCGT
TAGGGGCCCGTTGAGCCAAGAAATATTTCTATCGCGCTTTAATTTTCAATGAAATTAACGGTCAA
ATCGGTAGAGTCACGTATATAGAAGCCGACCACAGTGGCGCTTCCCGGGAAGCGGAAGCGGCGCT
TCCCCCTTCACCAAGTGGTGCTACTCGTCGAATGAGTAGAGGGGAAATAGCTCAGTTGGTTAGAG
TGCTGGTTTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGTTCGACGAGTACTCGT
TTACTTTCCCACCTCAGGGTCCGAACGAAGTGAGGACCACTCCGA
Right flanking sequence: Indices 212134 -- 212633
TCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCAGGGTCAGGGAAGCTAGATAGGCGCTTC
CCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGCGGGGTGAGTGGAGCCTATAGCCATGGAT
TCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGCACCACGCTAGACGCACGCAAGCTAGCCT
CACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAG
GACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAA
GTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAG
TTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCGAAGGGAGGAGTTGGAGGAGTTGGTCTGGGATGCCCCTGCCG
Found at i:211899 original size:39 final size:41
Alignment explanation
Indices: 211803--212170 Score: 374
Period size: 39 Copynumber: 8.9 Consensus size: 41
211793 GAACGAAGTG
211803 AGGACCACTCCG-A--CCGA-AGGGAGGAGTTGGCCCTCCGAT
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
211842 AGGAGGGCCACTCCGAATTCCGAGAGGGAGGAGTTGG-TCCG-T
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
211884 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGAT
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
*
211927 AGGAGGGCCACTCCGAATTCCGAGAGGGAGGGGTTGG-TCC--T
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
*
211968 ACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGAT
1 A-GGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
212012 AGGAGGGCCACTCCGAATTCCGAGAGGGAGGAGTTGG-TCC--T
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
*
212053 ACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGAT
1 A-GGACCACTCCGAATTCCGAGAGGGAGGAGTTGG--CTCCGAT
*
212097 AGGAGGGCCACTCCGAATTCCGATAGGGAGGAGTTGG-TCCGA-
1 AGGA---CCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
*
212139 AGGACCACTCCG-A--CCGATAGGGAGGAGTTGGC
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGC
212171 AGGGTCAGGG
Statistics
Matches: 289, Mismatches: 7, Indels: 68
0.79 0.02 0.19
Matches are distributed among these distances:
36 18 0.06
38 1 0.00
39 99 0.34
41 4 0.01
42 33 0.11
43 27 0.09
44 4 0.01
45 4 0.01
46 99 0.34
ACGTcount: A:0.23, C:0.25, G:0.36, T:0.16
Consensus pattern (41 bp):
AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCTCCGAT
Left flanking sequence: Indices 211303 -- 211802
GTGAGGTGCTTCACTGCGGTTGTTTCCCAACAGGGTGAATAGGCTCCGAGTCAGGATAATTGGCG
TGGGTAAAGTGGACGTAGCGTGGAGCGCGAAGAGGCAGAAGAAAGGGGCGGAGCCGGCCGCTTCG
CGGCCCGAATCAATATTGATTTGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGGGGGCCTCCGG
CCCCCCCACCCGTTAGGGGCCCGTTGAGCCAAGAAATATTTCTATCGCGCTTTAATTTTCAATGA
AATTAACGGTCAAATCGGTAGAGTCACGTATATAGAAGCCGACCACAGTGGCGCTTCCCGGGAAG
CGGAAGCGGCGCTTCCCCCTTCACCAAGTGGTGCTACTCGTCGAATGAGTAGAGGGGAAATAGCT
CAGTTGGTTAGAGTGCTGGTTTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGTTC
GACGAGTACTCGTTTACTTTCCCACCTCAGGGTCCGAACGAAGTG
Right flanking sequence: Indices 212171 -- 212670
AGGGTCAGGGAAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGC
GGGGTGAGTGGAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGC
ACCACGCTAGACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGA
GTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCTGGGATGC
CCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTTTTCTGCC
Found at i:211942 original size:85 final size:84
Alignment explanation
Indices: 211803--212170 Score: 597
Period size: 85 Copynumber: 4.4 Consensus size: 84
211793 GAACGAAGTG
211803 AGGACCACTCCG-A--CCGA-AGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
211864 AGAGGGAGGAGTTGGTCCGT
66 AGAGGGAGGAGTTGGTCC-T
211884 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
*
211949 AGAGGGAGGGGTTGGTCCT
66 AGAGGGAGGAGTTGGTCCT
*
211968 ACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCC
1 A-GGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCC
212033 GAGAGGGAGGAGTTGGTCCT
65 GAGAGGGAGGAGTTGGTCCT
*
212053 ACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCC
1 A-GGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCC
* *
212118 GATAGGGAGGAGTTGGTCCGA
65 GAGAGGGAGGAGTTGGTCC-T
*
212139 AGGACCACTCCG-A--CCGATAGGGAGGAGTTGGC
1 AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGC
212171 AGGGTCAGGG
Statistics
Matches: 274, Mismatches: 7, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
81 12 0.04
82 19 0.07
84 7 0.03
85 235 0.86
86 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.36, T:0.16
Consensus pattern (84 bp):
AGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCG
AGAGGGAGGAGTTGGTCCT
Left flanking sequence: Indices 211303 -- 211802
GTGAGGTGCTTCACTGCGGTTGTTTCCCAACAGGGTGAATAGGCTCCGAGTCAGGATAATTGGCG
TGGGTAAAGTGGACGTAGCGTGGAGCGCGAAGAGGCAGAAGAAAGGGGCGGAGCCGGCCGCTTCG
CGGCCCGAATCAATATTGATTTGGCCGAGGCTGGCCCAAAGGGCCAGCCCGGGGGGGGCCTCCGG
CCCCCCCACCCGTTAGGGGCCCGTTGAGCCAAGAAATATTTCTATCGCGCTTTAATTTTCAATGA
AATTAACGGTCAAATCGGTAGAGTCACGTATATAGAAGCCGACCACAGTGGCGCTTCCCGGGAAG
CGGAAGCGGCGCTTCCCCCTTCACCAAGTGGTGCTACTCGTCGAATGAGTAGAGGGGAAATAGCT
CAGTTGGTTAGAGTGCTGGTTTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGTTC
GACGAGTACTCGTTTACTTTCCCACCTCAGGGTCCGAACGAAGTG
Right flanking sequence: Indices 212171 -- 212670
AGGGTCAGGGAAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGC
GGGGTGAGTGGAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGC
ACCACGCTAGACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGAGGA
GTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
GGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCTGGGATGC
CCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTTTTCTGCC
Found at i:212400 original size:35 final size:35
Alignment explanation
Indices: 212356--212482 Score: 184
Period size: 35 Copynumber: 3.7 Consensus size: 35
212346 CCTCCGATAG
* *
212356 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
* *
212391 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
* *
212426 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
*
212461 GAGGACAACTCCGACCGA-AGGG
1 GAGGACCACTCCGACCGACAGGG
212483 AGGAGTGGGA
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
34 3 0.04
35 82 0.96
ACGTcount: A:0.27, C:0.31, G:0.31, T:0.10
Consensus pattern (35 bp):
GAGGACCACTCCGACCGACAGGGTCCGAACGAAGT
Left flanking sequence: Indices 211856 -- 212355
GAATTCCGAGAGGGAGGAGTTGGTCCGTAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGCCC
TCCGATAGGAGGGCCACTCCGAATTCCGAGAGGGAGGGGTTGGTCCTACGGACAACTCCGAATTC
CGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCGAGAGGGAGGAGTTGGTC
CTACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATT
CCGATAGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCAGGGTCAGGG
AAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGCGGGGTGAGTG
GAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGCACCACGCTAG
ACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAG
Right flanking sequence: Indices 212483 -- 212982
AGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAGGAGTTGGTCCGAAGGACC
ACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGT
TGGTCTGGGATGCCCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTTTTCTGCCGGTGCTA
GCAAGAAGATGATGGACAACACCCCTTTAAGCGGGAAGCAGCGCTCAGCCGGTTTAAAGTCATGT
ATTTTAACCGATTTAAACCTTCATGAAGTTGCCTTCCGTAGGCCCCGACCCCCGGCTAACCATCT
AGGCGCACCACTACAGTGCTCTAGACAGATGGCGGCACTATAGTGATAAGGCGCTACGCGCTGAA
CCTTAGGGGCGCCGGAGGCAGCAGGTCGCCCCCCCCCTGCCCTACCAAGAGAGAACCGCTTTTTC
TATTTCCCGGCGCAAGCCATGGAGGTATGGCTGAGTGGCTTAAGG
Found at i:212536 original size:9 final size:9
Alignment explanation
Indices: 212480--212533 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
212470 TCCGACCGAA
212480 GGGAGGAGT
1 GGGAGGAGT
212489 GGGAGGAGT
1 GGGAGGAGT
212498 GGGAGGAGT
1 GGGAGGAGT
212507 GGGAGGAGT
1 GGGAGGAGT
*
212516 GGGGGGAGT
1 GGGAGGAGT
*
212525 TGGAGGAGT
1 GGGAGGAGT
212534 TGGTCCGAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.20, C:0.00, G:0.67, T:0.13
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 211980 -- 212479
GAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTCCGAATTCCGAGAGGGAGGAG
TTGGTCCTACGGACAACTCCGAATTCCGAGAGGGAGGAGTTGGCCCTCCGATAGGAGGGCCACTC
CGAATTCCGATAGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCAGGG
TCAGGGAAGCTAGATAGGCGCTTCCCGCCGGGTGGCCGTCTGGCCACCCTGCCCTTTGGGCGGGG
TGAGTGGAGCCTATAGCCATGGATTCTTCTCGAAAGACCCTATTTGACGGGACGGAATGGCACCA
CGCTAGACGCACGCAAGCTAGCCTCACTATTCCCCCAGGGCCCTCCGATAGGAGGGCCACTCCGA
CCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
Right flanking sequence: Indices 212534 -- 213033
TGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGA
GGAGTTGGAGGAGTTGGTCTGGGATGCCCCTGCCGGCCTAGCCTAGGCCTGTCGTCTTCCGCCTT
TTCTGCCGGTGCTAGCAAGAAGATGATGGACAACACCCCTTTAAGCGGGAAGCAGCGCTCAGCCG
GTTTAAAGTCATGTATTTTAACCGATTTAAACCTTCATGAAGTTGCCTTCCGTAGGCCCCGACCC
CCGGCTAACCATCTAGGCGCACCACTACAGTGCTCTAGACAGATGGCGGCACTATAGTGATAAGG
CGCTACGCGCTGAACCTTAGGGGCGCCGGAGGCAGCAGGTCGCCCCCCCCCTGCCCTACCAAGAG
AGAACCGCTTTTTCTATTTCCCGGCGCAAGCCATGGAGGTATGGCTGAGTGGCTTAAGGCATTGG
TTTGCTAAATCAACATACAATAGTCTTGTATCATGGGTTCGAATC
Found at i:213708 original size:35 final size:32
Alignment explanation
Indices: 213629--213712 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 32
213619 CGGGTCCGAG
**
213629 GCGAGGACAACTCCGACCTACCGGGAGGAGTT
1 GCGAGGACAACTCCGACCTACCGGGAGGAGAA
* *
213661 G-GAGGACAACTCCGACCTACCGGGTCCGAGCGAA
1 GCGAGGACAACTCCGACCTACCGGG--AG-GAGAA
213695 GCGAGGACAACTCCGACC
1 GCGAGGACAACTCCGACC
213713 CTCTCCCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
31 23 0.52
32 1 0.02
33 1 0.02
34 3 0.07
35 16 0.36
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.10
Consensus pattern (32 bp):
GCGAGGACAACTCCGACCTACCGGGAGGAGAA
Left flanking sequence: Indices 213129 -- 213628
GTTCACCACCATCTGGAATTCTCGAGAATCGAGGGAACATCGTGGGCTAGTTAAGCCTAGCCTCG
GCCCCCTTTCTCTCCAGAAGAAAAAGGCGGGTAGCCTTCACTTATGGGAGTGACTACTCACTCGT
CGCCTACGAGTAGTCTACCTCACAGTAGTGGCGTTGCTCCGAATCACTGCCCGGGAGAGAGGCTG
AGCTATCGATAGCAAAGAGGCTGAGACGACCCTTATCCCAAAAGGGCGGCCCTCTCCTCCTTTCG
GTCGAGTGTCTATCGGCGAGGTAAGCGCGTAGCGCCCGCAGGCCTTCACGCTATGCGTTTTGGCC
TCGCCCTCTCCCTAATAAGGTCTCGTGTCTAAAGACCCGCATACATAATAGGCCCTTAGGCCACC
ACCCTAATATATTTATACGTGATTCTACCTCTTTTAGATCCAGGCTGCCCAACTCCTCTTTAAAG
GCGGAATTCAAATTTGTTGTCCTCCTGCCGGAGGGCGGGTCCGAG
Right flanking sequence: Indices 213713 -- 214212
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCG
AAGGGAGGAGTTGGGGGAGTTGGAAGACAACAAAGAATTCCGCCTTTAAAGAGGAGTTGGCCAAC
TCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTT
GGAGGAGTTGGGTCTTCGGATCTTCCTCTGTGACTGTAGTAGGCTCCATGAGGTAGACCTCCTGC
ATAGTCACACCTAGTGACCAAGGCACGGAGTCGGAGGACGGCTGAGTGTACTGCTTCTTGAGCCT
GAGGGTCACTTCCATCAACGTGAGGGTGCTGGACCTGAGCCTCTCAGAGAGGGTATATTCCCATT
TTACCCCTCTCTATCAAGGACAAACCCGCCTTTAAAGGTCCGAAC
Done.