Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_030900
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 372339
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
File 1 of 4
Found at i:842 original size:35 final size:35
Alignment explanation
Indices: 803--929 Score: 227
Period size: 35 Copynumber: 3.6 Consensus size: 35
793 TCCCACTCCT
803 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
838 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
873 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
908 CCCTATCGGTCGGAGTGGTCCT
1 CCCGGTAGGTCGGAGTGGTCCT
930 TCGGACCAAC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 303 -- 802
ATTTCTTCCGGCCTCCTCCTACCCATCATCTATCTCTGGGTGCCTAGTAGGGGGACGAGGGTAAG
GGAAGTGACGGCAACGGCACTTACCGCCCTCCTATCGGGCCCGCCCGGAACTGTAGTACGCTCCC
GCCACAATGATGATGGGGTGGGCAGGGTAGCGCGTAGCGCTACCCGCTAGCACCCCCCTTAGGAG
GCTAGGGAAGCGGCTTCGAACCTTCATTAAGGAAACCCTTTGCGAAGTTGGCGAAGCAGAGCCTT
CGCTATCGTGGGTCCCCCCGGCAGGAGGACACTCCCCCCGGGGGAGGTTCCGACTATGGGAGGAC
ACTCGACCGAAGGGGTCAGGTTTGCCCCTTTAGTCCCCACCCACTTTAGAGAGGGTGGTGGGGCA
GGGCGTCGCCCAACTCCCTACCCACCACCACCCACCTTGTGGGCGGTGGTGGTTGTCCAACTCCT
CCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCT
Right flanking sequence: Indices 930 -- 1429
TCGGACCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCG
GTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCC
TTGGGACACCCCCAACCCTGGCTGGGGCCAGGGTAGCGCTACCCGCCCGGGTCCGCACCCCCCAG
GCCCCTACCCCAGCCAGTGGCTTTAGCCCCTCAACCTCCCTTCGGTCGGTTGAGTGGCTAAAGCC
CCTCCCTACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGGGTGAGTGGTTCGCGCTCAC
CTGAAGTTCCGGGTGCGCGTAGCGCCTCAACCACTATAGTGCTGCCCCTTTAAACCCCAGCAAGT
GGCCCTTTCGGCTCAGTTGGAAGCGCGTAGCGCACTGAATAATTCCGAAGTGCGCTACGCGCTGA
CAACCTGAATTACCCACTGTAGTAATATACCGGGTAAGTGCTACC
Found at i:1530 original size:35 final size:35
Alignment explanation
Indices: 1484--1610 Score: 227
Period size: 35 Copynumber: 3.6 Consensus size: 35
1474 AAGGGTCCGT
* **
1484 AGGACCACTCCGACCGATAGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1519 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1554 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1589 AGGACCACTCCGACCTACCGGG
1 AGGACCACTCCGACCTACCGGG
1611 AGGAGTGGGA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 89 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 984 -- 1483
GGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
CCTTCGGACCCTTGGGACACCCCCAACCCTGGCTGGGGCCAGGGTAGCGCTACCCGCCCGGGTCC
GCACCCCCCAGGCCCCTACCCCAGCCAGTGGCTTTAGCCCCTCAACCTCCCTTCGGTCGGTTGAG
TGGCTAAAGCCCCTCCCTACGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGGGTGAGTGG
TTCGCGCTCACCTGAAGTTCCGGGTGCGCGTAGCGCCTCAACCACTATAGTGCTGCCCCTTTAAA
CCCCAGCAAGTGGCCCTTTCGGCTCAGTTGGAAGCGCGTAGCGCACTGAATAATTCCGAAGTGCG
CTACGCGCTGACAACCTGAATTACCCACTGTAGTAATATACCGGGTAAGTGCTACCCCCGCCCTG
CCGCCCTTCTAGAAATAAGTGCCCCTTTTTCACAGAAGGGTCCGT
Right flanking sequence: Indices 1611 -- 2110
AGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGCCA
GCCTCCGAAGGGACGGGGTGGAACTATAGGGCGGCCACCCGGCGGGAAGCGCGTAGCGCTTCAAC
TGAAGTCAGTCCCACCACAAGCCCTTCTCTCTTAAAAGGATTTATCCTGAGGATTTCAGTGGAGG
CACTTCCAGTGCCGAAGGCCCAGCAAGGCCGGCTTCACTATAGTGCGTTAGCGCTACCCAACTCG
TTAAAGTCTAAAGTCAATTAATTGAAAATTAATTGACTTTGAACGGAATTCCAATTTGTTGTCCC
CCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTT
AGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTATCGGAC
Found at i:3395 original size:5 final size:5
Alignment explanation
Indices: 3385--3409 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
3375 CTTTTCAGAG
3385 AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA
3410 CCCCTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAGTA
Left flanking sequence: Indices 2885 -- 3384
ACAGTTATATGATTCCGGAGGAGGATTTGGAATTGGGTCAATTACGGTTACTGGAAGTGGACAAT
CGAGTGGTTGTACCAGCCAAGACTCATCTACGTGTGATTATAACACCTGCTGATGTGCCTCATAG
TTGGGCTGTACCTTCCTTAGGGGTAAAATGTGATGCTGTCCCTGGTCGTTTAAATCAGACTTCCC
TTTTTCTTAAACGAGAAGGGGTTTACTATGGTCAGTGCAGTGAACTCTGCGGAACCAATCATGCG
TTTACGCCTATTGTCGTAGAAGCTGCTTCTTCGGATGATTATCTCTCCTGGGTATCCAGCGGTCA
ATAACCAATGATGCTTGTGTTTATTGGACCTTCCATTGGGTACTATGACGCTAGTGCTTCCGGTG
ATGATTTTTTCGCCAAAAATCATTTTATTTTACTTTAATTTTCGTCTTCAATTAATTTTAAATTA
ATTGAAAATTAGTTGAATTCAGTGCGTCGAGTCCGCTTTTCAGAG
Right flanking sequence: Indices 3410 -- 3909
CCCCTTTTAATTAATTAAGTGCCGTTTCCTTTTTCCCTTTCTCTTTTAAGGGGGCTCTACGTGGT
AGTGTTTCCGGTGGGGATTTATCCGGGTTGGATCCTGCAGGAGGTGCCGGGAAAACGCTACGCGT
TTTCCTTCCGGCACTTCATAAATTGGGCTAAAGCACTCCCCTAACCACCCATGAATGGGTGGTGG
TGCCGGGGCGTTTAAAGGCACAGGGCCCAAAGGGTCCTCCGACAGGAGGACAACTCCGACCCTCT
CCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCG
GGAGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCGGTAGAATACTTGACT
TTAAAGTTAAAGTACGTGACTTTAAAGGGTTAAAAGGCACGCGCCCCCTGCCCGAAAGGGCAACT
CCGACCTACCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGGAG
Found at i:5656 original size:64 final size:64
Alignment explanation
Indices: 5572--5736 Score: 312
Period size: 64 Copynumber: 2.6 Consensus size: 64
5562 GCCACTCCGA
*
5572 CCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
5637 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
5701 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
1 CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACC
5737 GAAGGGAGGA
Statistics
Matches: 99, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
64 95 0.96
65 4 0.04
ACGTcount: A:0.25, C:0.32, G:0.28, T:0.15
Consensus pattern (64 bp):
CCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGG
Left flanking sequence: Indices 5072 -- 5571
GGGCCAGGGGCCCCCAAGGGTCCGACCGAAGGGTCCGAGGCGAGGACAACTCCGACCGCGGGTCC
GAGCGAAGCGAGGACGACTCCGACCGAAGGGAGGAGTTGGGGGACAACCGTTGTATCCTTTCCTT
CCTTTGCCTAGCAGCCATCCTTCCTTTTTGAAGCGATTCCTTCGCGAGCGTATACTCGCAGCCAT
AGGTTTACTCTTCAGCCGATTCTCTGCCTTTTCGAAGCGCCTTTCCGAAGCAATTCTTTCTTCCC
TTTCTTTATTTCCCTCTCATTTTCTTTCTCCCTTTCCTTTCAACTCCTCCCTATCGGTCGGAGTG
GCCCTCCTTCGGAGGGCCCTGCAAGTTCACCAAAAGTGAAGTCGGTTGGAGGCGGTTTGAGGCAA
GGAGAGGCCATGTTCCAGAAGATGAAATCGAAGCTAAGCACCCAAACTAGGGGACACTTCACCTA
TGCGCAGCTTCGCTCACAGGGCCCTCCGAAGGAGGGCCACTCCGA
Right flanking sequence: Indices 5737 -- 6236
GAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGTCCGGAGGACCACTCCGACCGAAGGGTCCGAA
CGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGCCTTTTCGAAGCAAATCCT
TCGATTCCTTCGAAGCCCAGCCTCCGGCACGAGGCCCAGCAGCCAGCCAAAGCCCAGCACAGTCC
AACACAGCCTTTCCACAGCCTTCTCTTCGAAGCTTTCCATTGCCCAGAGAATCGAAGCAAGTACC
AAGCACGTAGTGGGTGAGACTGCAACCTTGCAGCCTTGCCCAGCAGCATTCCTTTCTTCGCCTTG
CCCTCCTTTCGAAGCCGAGTCTCTTCCTTCGCGAGCGCAGCCTCGCAGCTGCCTTCTTTTTCTCT
ACTTTTCTCCGCCCAGCAGCCTTCCCATCCTTGCTTGGTGAACAGCCTAAAGCATTACTTCTTCA
CGAAAATAGCGGTAGGAAAGGAGGCTTCAGCGTATCTGCGAAACG
Found at i:5753 original size:9 final size:9
Alignment explanation
Indices: 5741--5769 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
5731 CCGACCGAAG
5741 GGAGGAGTT
1 GGAGGAGTT
5750 GGAGGAGTT
1 GGAGGAGTT
5759 GGAGGAGTT
1 GGAGGAGTT
5768 GG
1 GG
5770 TCCGGAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 5241 -- 5740
CTTCGCGAGCGTATACTCGCAGCCATAGGTTTACTCTTCAGCCGATTCTCTGCCTTTTCGAAGCG
CCTTTCCGAAGCAATTCTTTCTTCCCTTTCTTTATTTCCCTCTCATTTTCTTTCTCCCTTTCCTT
TCAACTCCTCCCTATCGGTCGGAGTGGCCCTCCTTCGGAGGGCCCTGCAAGTTCACCAAAAGTGA
AGTCGGTTGGAGGCGGTTTGAGGCAAGGAGAGGCCATGTTCCAGAAGATGAAATCGAAGCTAAGC
ACCCAAACTAGGGGACACTTCACCTATGCGCAGCTTCGCTCACAGGGCCCTCCGAAGGAGGGCCA
CTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 5770 -- 6269
TCCGGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAG
TGGGGGGAGTTGGCCTTTTCGAAGCAAATCCTTCGATTCCTTCGAAGCCCAGCCTCCGGCACGAG
GCCCAGCAGCCAGCCAAAGCCCAGCACAGTCCAACACAGCCTTTCCACAGCCTTCTCTTCGAAGC
TTTCCATTGCCCAGAGAATCGAAGCAAGTACCAAGCACGTAGTGGGTGAGACTGCAACCTTGCAG
CCTTGCCCAGCAGCATTCCTTTCTTCGCCTTGCCCTCCTTTCGAAGCCGAGTCTCTTCCTTCGCG
AGCGCAGCCTCGCAGCTGCCTTCTTTTTCTCTACTTTTCTCCGCCCAGCAGCCTTCCCATCCTTG
CTTGGTGAACAGCCTAAAGCATTACTTCTTCACGAAAATAGCGGTAGGAAAGGAGGCTTCAGCGT
ATCTGCGAAACGAAGCGCGTAGAAGCGCGTAGCGCCAACTACTAT
Found at i:6458 original size:17 final size:17
Alignment explanation
Indices: 6412--6447 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
6402 ATCACCGCTT
*
6412 AAAGTCAATTATCGCCA
1 AAAGTTAATTATCGCCA
6429 AAAGTTAATTATCGCCA
1 AAAGTTAATTATCGCCA
6446 AA
1 AA
6448 TGTACATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (17 bp):
AAAGTTAATTATCGCCA
Left flanking sequence: Indices 5912 -- 6411
GCCAAAGCCCAGCACAGTCCAACACAGCCTTTCCACAGCCTTCTCTTCGAAGCTTTCCATTGCCC
AGAGAATCGAAGCAAGTACCAAGCACGTAGTGGGTGAGACTGCAACCTTGCAGCCTTGCCCAGCA
GCATTCCTTTCTTCGCCTTGCCCTCCTTTCGAAGCCGAGTCTCTTCCTTCGCGAGCGCAGCCTCG
CAGCTGCCTTCTTTTTCTCTACTTTTCTCCGCCCAGCAGCCTTCCCATCCTTGCTTGGTGAACAG
CCTAAAGCATTACTTCTTCACGAAAATAGCGGTAGGAAAGGAGGCTTCAGCGTATCTGCGAAACG
AAGCGCGTAGAAGCGCGTAGCGCCAACTACTATCTATCTTTCTCTCTGACGCGGATGGTTTTCAC
CAATCTTTAAAACAAAAAAGGAGGCACTTTTATTTTAAAAGGCTTGATTTGGTGATAACGGCACA
GGTGATAACTCTGGTCCTATCGCCAAATTCTGAATATCACCGCTT
Right flanking sequence: Indices 6448 -- 6947
TGTACATTATCACCAACTACAAAGAAGCCTGCGAATGGCACGACATCGACTTCTCGTGTCTCGAT
TCTGCTCTCTAGCACCCCATTTTAGGTAGGGAAAGCAAACAGAGGCACTCGATTTTAAGGTGGTT
TTATTTTACAAAGAGGGCCTGGGCAGCGCGTAGCGCTGAAACCCAATTCGCATCTTCCGATTCAG
TCGCATCTTCCGAAATTTCCTTTATGCGTTGGTAGGCTTTCGAAAGAACCTTTAATTGAATTTCA
TTGAAAATTAAAGCAAATTTACTTTAATTTTCAATTAAGTTAAATTAAAGTAACTTAGAGCATTA
AAGTAAATTTGTAAATTTACTTTAATTTTAGGAAAACGCGTGTTTCACGCTACGCTGTGGCGTTT
ACGCGCGAAGCGCCGCCTATCATAATAATGCGCTGGCTATTCTACTCCCGGGACCTCAGATTTCG
ACAGGCTGACCTTTACCCGTACAGATGGGATTCGATGGCATAGAA
Found at i:7813 original size:23 final size:22
Alignment explanation
Indices: 7779--7835 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
7769 GTATGCTCTC
7779 AGAAAGGGAAATATCTTTCCCAA
1 AGAAAGGGAAATATCTTTCCC-A
* * *
7802 AGAAAGGTAAATTTCTTTTCCA
1 AGAAAGGGAAATATCTTTCCCA
7824 AGAAAAGGGAAA
1 AG-AAAGGGAAA
7836 CCAACTCCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.10
23 26 0.90
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (22 bp):
AGAAAGGGAAATATCTTTCCCA
Left flanking sequence: Indices 7279 -- 7778
GCGCTCAGGCGTGTGGCCACAACTCACTGAGTGGGGTTAAAGTCAGTGAGGTTAAAGCGCGTAGC
GCCTAGACCCACCCACCTGCGCAAGCAGGAAGGGGCAGAGCAGCCTAGGCCGTAGCGGGTAGGGT
ACCATACCCAGGTAGGCGCGCTCTACCCAACGCGCCCTAGTAGCGCACTTTACTGTTGCTTTCCC
TTTATCTAATGCGCTTTCCCCTTCTTCGACTAACGCGCTTTCCTTTAAACAACGCGCTTTCCCGT
TAGCCGCCCGTTAGCCCGTAGGCACTTTCTAGCCTGTGAGCCCTAACAACGCACTTTCTCAGCCT
GTGAGCCTACAGCGCCTGGGCTGGGCTACAATAAGACCCAAAGCTGTATTATCGTACACTCCCTA
TGCGCATTTAAAAGCGCACTTTCCCGGGGTGCTATGTAATCTTTTCCGAAAATCTAGCGCTTTAA
AGGGCCCTTTATTTGAAAGGCCGATTTTCTTTAGCGTATGCTCTC
Right flanking sequence: Indices 7836 -- 8335
CCAACTCCCCCAACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCG
GTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCCTAAC
AGCGTGGTTGTTTACTGATAAAAAAGGGCCTATCCGTTGATCTTGCTTCTGAACCCTCGCACCCG
CTTTAAAGGGCAAGAGCACCGATTAGGCCGCGGACCCACCCCCATGAAAGGCAGGCGGGAAGTTC
TCCTCTCAGGGAGGCCCCCTCCCCTGTCTGTTGGGCAGCCTTTTATGTGGGGCTTGGGCTCTGTC
TGTTGGGACCCGGGGCATTACTCTGTGGGCAGAAAGAGAGGCCGGTGGAAGGCTCCTAGCTTCCC
GGCAGGCTTTCTTCCTGGGCCGGCGGAAAGAAAGTGGCATTAGTCGGATCGTGAGATCGTTCTAT
CTACCATATTTTACGTCGACCCTCCGCACTGGAACCCTTTTTTTC
Found at i:7915 original size:35 final size:35
Alignment explanation
Indices: 7869--7953 Score: 143
Period size: 35 Copynumber: 2.4 Consensus size: 35
7859 TCCTCCCTTC
*
7869 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGATA
* *
7904 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGATA
7939 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
7954 TCGGACCCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.11, C:0.28, G:0.34, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGATA
Left flanking sequence: Indices 7369 -- 7868
CAGGAAGGGGCAGAGCAGCCTAGGCCGTAGCGGGTAGGGTACCATACCCAGGTAGGCGCGCTCTA
CCCAACGCGCCCTAGTAGCGCACTTTACTGTTGCTTTCCCTTTATCTAATGCGCTTTCCCCTTCT
TCGACTAACGCGCTTTCCTTTAAACAACGCGCTTTCCCGTTAGCCGCCCGTTAGCCCGTAGGCAC
TTTCTAGCCTGTGAGCCCTAACAACGCACTTTCTCAGCCTGTGAGCCTACAGCGCCTGGGCTGGG
CTACAATAAGACCCAAAGCTGTATTATCGTACACTCCCTATGCGCATTTAAAAGCGCACTTTCCC
GGGGTGCTATGTAATCTTTTCCGAAAATCTAGCGCTTTAAAGGGCCCTTTATTTGAAAGGCCGAT
TTTCTTTAGCGTATGCTCTCAGAAAGGGAAATATCTTTCCCAAAGAAAGGTAAATTTCTTTTCCA
AGAAAAGGGAAACCAACTCCCCCAACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 7954 -- 8453
TCGGACCCTAACAGCGTGGTTGTTTACTGATAAAAAAGGGCCTATCCGTTGATCTTGCTTCTGAA
CCCTCGCACCCGCTTTAAAGGGCAAGAGCACCGATTAGGCCGCGGACCCACCCCCATGAAAGGCA
GGCGGGAAGTTCTCCTCTCAGGGAGGCCCCCTCCCCTGTCTGTTGGGCAGCCTTTTATGTGGGGC
TTGGGCTCTGTCTGTTGGGACCCGGGGCATTACTCTGTGGGCAGAAAGAGAGGCCGGTGGAAGGC
TCCTAGCTTCCCGGCAGGCTTTCTTCCTGGGCCGGCGGAAAGAAAGTGGCATTAGTCGGATCGTG
AGATCGTTCTATCTACCATATTTTACGTCGACCCTCCGCACTGGAACCCTTTTTTTCTGGATCTG
TGCAAGGTCGATCAATCCCTCTTTCGTTTCCCCTGCCTACGGGCACCTCAGAAGGGATTTGCCCC
GGCAGGGGCAGCCTGCAGGGCGCCGGGCTCATCAAAGGGGTGGTA
Found at i:8633 original size:9 final size:9
Alignment explanation
Indices: 8621--8649 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8611 CCGACCGAAG
8621 GGAGGAGTT
1 GGAGGAGTT
8630 GGAGGAGTT
1 GGAGGAGTT
8639 GGAGGAGTT
1 GGAGGAGTT
8648 GG
1 GG
8650 TCCGAAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.21
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 8121 -- 8620
GTCTGTTGGGCAGCCTTTTATGTGGGGCTTGGGCTCTGTCTGTTGGGACCCGGGGCATTACTCTG
TGGGCAGAAAGAGAGGCCGGTGGAAGGCTCCTAGCTTCCCGGCAGGCTTTCTTCCTGGGCCGGCG
GAAAGAAAGTGGCATTAGTCGGATCGTGAGATCGTTCTATCTACCATATTTTACGTCGACCCTCC
GCACTGGAACCCTTTTTTTCTGGATCTGTGCAAGGTCGATCAATCCCTCTTTCGTTTCCCCTGCC
TACGGGCACCTCAGAAGGGATTTGCCCCGGCAGGGGCAGCCTGCAGGGCGCCGGGCTCATCAAAG
GGGTGGTAGAATCGAACCAGGCCCTTCCCAAACGCCTTAACCAGGGCCCTCCGAAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 8650 -- 9149
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGTTGGTTAGCCCGGCACCAGGGTTGGTTAT
CTCATTTACCCAATTTGCCGGACTGATCGAGCTCATTTTCCCGGGCATTTTTCCCTTCTTATTTA
CCCAATTCTAGGTCTCGACCCGCCGGGGCCCTTTAACTTGTAACACAGATCGATGATAGCCCCAA
CTTTAAGCAGACATCTCGCAATGGCAGAACAGCCTACAAACGTTTTCTTGCCTTTCAAATAAAGT
TTCTATCCCAGGACCTTTTAAAAGTCGCCCCGAAATCACAATGAACCGATTAGTCGGTAGCGATT
TCGGGTGCGGAGCCGTCATTGTAAAAGGTAATCAGGTTGGCCTTTTAAAAGGGCCGAGAATATCA
CACGGTACACATTCGCCCGGAAGATATATGAACTCTTCCCAGAAGCCAATCATATCGATTTCGAT
AACAAATCCTTTAGACCCCCAGAAGTGCACAGATCAAGAAACTTC
Found at i:9689 original size:43 final size:43
Alignment explanation
Indices: 9628--9883 Score: 458
Period size: 43 Copynumber: 6.0 Consensus size: 43
9618 CTTTAAAAGG
*
9628 GTGAAGCGGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
9671 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
*
9714 GTAAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
*
9757 GTGAGGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
*
9800 GTGAAGCGGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
* *
9843 GTGAAGCGGATGCCGCAGAGGCTGAAGCTGCGGCGGGCTCG
1 GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCG
9884 AAGTAAGGCC
Statistics
Matches: 206, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 206 1.00
ACGTcount: A:0.21, C:0.23, G:0.43, T:0.12
Consensus pattern (43 bp):
GTGAAGCAGATGCCGCAAAGGCTGAAGCTGCGGCGGGCTCGGA
Left flanking sequence: Indices 9128 -- 9627
AGTGCACAGATCAAGAAACTTCTATCGAGTAGCAGCAGCTACTTCTGGGGCAACGATACCCCTTC
CGATAAGCACCAACAGCAGCAACCCAATGAATTAAGTACCGTTCAGAAGCCTCTAGAAATTGAAT
CTAATGCATACTCAGCACTAAAGGACTCTGACAATGGTTGTTTCGTGGGGACCCTGCCGCACGGG
GGCCCACTCGTCCATTGCTGTGTCACAGAAAACGGTGAAAGCTGATGTCACGGTTTCTTCACCTT
CCCATACGAGTGCCATAGTCCCTTCATCAGTACCTGCTGGTCACTCCGCAGGCGCCTTGTCTCCT
CGTCACGATTTTAGAAGCTGCTTCTAAAAGGCTCGGATGGAACATACCATTGCCATTCTAGAACA
TCAAGTCGCACTTAATGCTAAGACATTAAGTTTCGAGTCTTCTGATTCACGACTCCTAGAGAGCC
ACGGCTCTCAGGAGTCAAAAACCCTTGCTAGAGCCCTTTAAAAGG
Right flanking sequence: Indices 9884 -- 10383
AAGTAAGGCCGAAGACGCTGCTAAAGCGGATGCTGCGGCGAGCCCTTTAAAAGGGTGAAGCGGAT
GCCGCAGAGGATGACCCGACTAGCAAGTCGCCTGAGCCGCCTACTGAGGTTCAGTCCATTCATGG
TGATTTCCATGATGATGATTGGGCACTTTAAAGTGGAACAAGAGTGGTTAAGAGAGCTAGACGCG
GAAGAGGAGGAAATGGAACAATTTATGAGCCAGTTGTATGCCTCCCGCAGACCAGTGCCACCCCC
CTCTGGTACTTCGAGTGTGGAGAAGGAGATACAAGAGTTGGTGAGAAAGATAAGGGAGGAGAAAA
AGGAGGAAATGGAACAATTTATGAGCCAGTTGTATGCCTCCCGCAGGGAAGAAGTATGGGATGCT
GAGGCGGAGAAGCAGCCTTCTTCCTCCCTTGGGAAGACCCAGCTGCGCGCGTGCTACCACCAGTG
CCACCCTCCTCAACAACCGGGGTTCGCCGGGCCATTTGGAGGCCA
Found at i:12040 original size:35 final size:35
Alignment explanation
Indices: 11991--12123 Score: 223
Period size: 35 Copynumber: 3.8 Consensus size: 35
11981 GTTGGCCCTC
* * **
11991 CGAAG-GAGGGCCACTCCGACCGATAGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
12025 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
12060 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
12095 CGAAGTGAGGACCACTCCGACCTACCGGG
1 CGAAGTGAGGACCACTCCGACCTACCGGG
12124 AGGAGTGGGA
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
34 5 0.05
35 89 0.95
ACGTcount: A:0.26, C:0.33, G:0.31, T:0.11
Consensus pattern (35 bp):
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
Left flanking sequence: Indices 11491 -- 11990
CGATTTCTCCGCCTTTCTAGCCTACCCGAGGTAGGAATGGTTGTGAGGCTGTTTTATGGTCACTG
AGTCTAGAGAATAAAAGGAAGACCACGTAGTTCTCGAACAAACTGAAGTTCATAGGAAGGGAAGC
GTAGCATACGTTCATAATGGGACTGGACGCTGAGTCCATGGAAGAAGCGTAAGCTACGTTCCCGA
ACAAACGGAAGTTAATAGGGAAAACGTACTGAGGGCAGCTGAAGTTCAATGGTTTTCCGGGTTTT
TTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGGCTTTTTCTTGAGTTTCCCGGG
ATTTTTTGACACTTTAGGCTTTCTAGGCGAGGGACCACCTACCTCAGGGCCCTCCGAAGGAGGGC
AACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTC
Right flanking sequence: Indices 12124 -- 12623
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTCCTCCGACAG
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGAGGAGTTGGCGG
ATGAGGGGGCTCCGAAGAAGGCTCAAAAAGGCCTTTAAAAGAACGATCGGTGAAGGGACCTATAA
AACGAAAGCAGCGCCCCATCCATCTCGCCCAGTTAGGGCGTTCTTGACCCATCAGCAAGGCCCTT
AGTATAGTATTGCATTATCCATAGAGACCTTTAAGTGCCAATCGAATGAAAAGAGTCGTCTCATA
GAGGAATGGGCAAGAAGTGTAAGCACTGCGAGGTCCGAGCAGGGTGGCCACACTTCTGAAGGTAA
TTTAATTTAGCTTCAAATTATTTTAAACGGCAGGTTTCAGCGCTACGCGCCCCCCTGCCCTCCGG
CAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGA
Found at i:12133 original size:9 final size:9
Alignment explanation
Indices: 12121--12174 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
12111 CCGACCTACC
12121 GGGAGGAGT
1 GGGAGGAGT
12130 GGGAGGAGT
1 GGGAGGAGT
*
12139 GGGGGGAGT
1 GGGAGGAGT
12148 GGGAGGAGT
1 GGGAGGAGT
*
12157 GGGGGGAGT
1 GGGAGGAGT
12166 GGGAGGAGT
1 GGGAGGAGT
12175 TGGTCCTCCG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.19, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 11621 -- 12120
GTAGCATACGTTCATAATGGGACTGGACGCTGAGTCCATGGAAGAAGCGTAAGCTACGTTCCCGA
ACAAACGGAAGTTAATAGGGAAAACGTACTGAGGGCAGCTGAAGTTCAATGGTTTTCCGGGTTTT
TTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGGCTTTTTCTTGAGTTTCCCGGG
ATTTTTTGACACTTTAGGCTTTCTAGGCGAGGGACCACCTACCTCAGGGCCCTCCGAAGGAGGGC
AACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGTCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGAC
CGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 12175 -- 12674
TGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAG
GGAGGAGTTGGCGGATGAGGGGGCTCCGAAGAAGGCTCAAAAAGGCCTTTAAAAGAACGATCGGT
GAAGGGACCTATAAAACGAAAGCAGCGCCCCATCCATCTCGCCCAGTTAGGGCGTTCTTGACCCA
TCAGCAAGGCCCTTAGTATAGTATTGCATTATCCATAGAGACCTTTAAGTGCCAATCGAATGAAA
AGAGTCGTCTCATAGAGGAATGGGCAAGAAGTGTAAGCACTGCGAGGTCCGAGCAGGGTGGCCAC
ACTTCTGAAGGTAATTTAATTTAGCTTCAAATTATTTTAAACGGCAGGTTTCAGCGCTACGCGCC
CCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTACTTTTAA
Found at i:12148 original size:18 final size:18
Alignment explanation
Indices: 12125--12174 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
12115 CCTACCGGGA
12125 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
12143 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
12161 GGAGTGGGAGGAGT
1 GGAGTGGGAGGAGT
12175 TGGTCCTCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.70, T:0.12
Consensus pattern (18 bp):
GGAGTGGGAGGAGTGGGG
Left flanking sequence: Indices 11625 -- 12124
CATACGTTCATAATGGGACTGGACGCTGAGTCCATGGAAGAAGCGTAAGCTACGTTCCCGAACAA
ACGGAAGTTAATAGGGAAAACGTACTGAGGGCAGCTGAAGTTCAATGGTTTTCCGGGTTTTTTCG
ACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGGCTTTTTCTTGAGTTTCCCGGGATTT
TTTGACACTTTAGGCTTTCTAGGCGAGGGACCACCTACCTCAGGGCCCTCCGAAGGAGGGCAACT
CCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGG
TCCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGA
Right flanking sequence: Indices 12175 -- 12674
TGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAG
GGAGGAGTTGGCGGATGAGGGGGCTCCGAAGAAGGCTCAAAAAGGCCTTTAAAAGAACGATCGGT
GAAGGGACCTATAAAACGAAAGCAGCGCCCCATCCATCTCGCCCAGTTAGGGCGTTCTTGACCCA
TCAGCAAGGCCCTTAGTATAGTATTGCATTATCCATAGAGACCTTTAAGTGCCAATCGAATGAAA
AGAGTCGTCTCATAGAGGAATGGGCAAGAAGTGTAAGCACTGCGAGGTCCGAGCAGGGTGGCCAC
ACTTCTGAAGGTAATTTAATTTAGCTTCAAATTATTTTAAACGGCAGGTTTCAGCGCTACGCGCC
CCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACAACTC
CGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTACTTTTAA
Found at i:13256 original size:79 final size:79
Alignment explanation
Indices: 13103--13272 Score: 270
Period size: 79 Copynumber: 2.2 Consensus size: 79
13093 CCGACCGATA
13103 GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
1 GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
13168 CCGAAGGGAGGAGT
66 CCGAAGGGAGGAGT
* * *
13182 TGGAGGAGTTGGTCCGGAGGACCACTCCGACCGA-AGGGTCCGAACGAAGTGAGGACCACTCCGA
1 GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
* *
13246 CCTACCGGGAGGAGT
66 CCGA-AGGGAGGAGT
*
13261 GGGGGGAGTTGG
1 GGGAGGAGTTGG
13273 GCCAAATTTC
Statistics
Matches: 83, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 32 0.39
79 51 0.61
ACGTcount: A:0.25, C:0.22, G:0.41, T:0.12
Consensus pattern (79 bp):
GGGAGGAGTTGGTCCGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGAGT
Left flanking sequence: Indices 12603 -- 13102
AGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCAGCGCTA
CTTTTAACTGCCCGCCGGGGGTTAAAATACGCGCCCCCTGCCCGAGCGAGCGATAGTTTTTTTAT
GAGTCAACAACGCTACGGAATGGATTGATTCACGGTGGCACATGCTGACTGGAAACCACCGCCAC
AGCCGATAGAAAATCAACTCATTCGGTCCATGAAGGAACTTAAGACCCGGTGACGTGGCCTTTTC
TGGCCAAGAAAAGGGGCGGCCCCGCCCTACCCCTTGCCGTGGCCCAGGGCCGGGGATAGGGGGGC
CAGGGTAGGGGCAGGGGGCCCCCGCCGGGCGCGTAGCGCTACCATAAATACCTCTCCTTCCTGAA
CTCGTTAAGGCATAAGATTCTCAACTGCAAGCGCCGTATTCACTCGTTCTTTGGGGTTCTTTCAC
TCCCTCAATCAGGGCCCTCCGATAGGAGGGCCACTCCGACCGATA
Right flanking sequence: Indices 13273 -- 13772
GCCAAATTTCACCGGTCGTGTGGGTGAAGGGAAAGGTTGTTGAATGTGACTCCTAGTCGATTTAG
TAGACTGCTTTCTGTTAGAAGTTATCTCCGTCTCCCCTTCAAACTTCACGAGAGTACTTCGCTTG
TGCTGCTTCCCTACACCGAAAGTCACTCTCGCAACACTGACAAGGAATGGAATTGATTTAAGCGC
TTAACTCCTAGCTCTAAGACGCCGGGATATGATTCAAGCATCTCGAAAGTGAGAAGGATTTCTGC
TTTCTCAGCCTGTTAACGGAAGATAAAACAATTGCTCTCCCCGCCCTGTGGGAATGGAAGTCAGT
CTGGTTTGCATTGCTATAGGGCTATGAAAAGCATCTCGAAAGTGAGGAGGGAAAAGAATGTACTG
GAAAAAGCTATCTGTACTGCTCTGTTGCAGCCCTTCAATCTTTTTCCAGGATCGGTTCAGCGGAT
CTCAGATCGGTGTCTAAACTTGATAGACGGACGATCGTTCGAATG
Found at i:14481 original size:40 final size:40
Alignment explanation
Indices: 14423--14532 Score: 211
Period size: 40 Copynumber: 2.8 Consensus size: 40
14413 AGAATGTAGC
14423 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
*
14463 CCCACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
14503 CCAACTCCTCCCTCTCGGAATTCGGAGTGG
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGG
14533 CCCTCCTATC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.16, C:0.36, G:0.23, T:0.25
Consensus pattern (40 bp):
CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTATCGGA
Left flanking sequence: Indices 13923 -- 14422
TTCGAACGTAGTCCCCACGCTCATTAAGTACGTACGCTACGCCTCGTAGCCTAGGTAATCTTGCT
GTCTAGTCCGGAACAACATAGGCTACGCGTCGTAATCCCGCCTACGTTGGGAAAAGATTCTTAGT
CCCACCACCGCTTAGATTGGGGAACGTAGGCATCAACCACAATTTGTAGGTCTCTCTTTCATGCA
CGTACGCTATGCATTTACTATGGAACTAGTCGTTGCTTCGCAGTCCTTATGTCCCTAGAAGGAAC
GTAGGCCTTCGGTAGGAGATGTAGCCCTCAGGGAAAGGGTCTTTTTTTAATCCCCCACCTCGTTC
GTGAGTCTGCAGCCCGTAGTTAGTTTGAATGTAGCTCACGTTCAACCTGGAGAAACAACGGCTAC
AATTTTGTAGGTCCCTCATTATGAAAGTTATCTGCCGGCATTCTTGCTTTCTAGTTCCCAAAAAG
GAACGTAGGCTATGCGTTGCAGTCCCTCAATAGGAAGAATGTAGC
Right flanking sequence: Indices 14533 -- 15032
CCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCC
TTTAGGCCAGCCCGGGGGGGCCGGAGGCCCCCCACCCCTTTCAGCAGGAGCCGATCAATTTCGTT
AATTTACTTTAATTTTAACTTAAATTCAATGCACTTTAACGCGCTGGTATTATACCGATTCGACC
AACGTTGAGTGCCCAGGAGGCGAATTGACCCGGAAAGGGCGACCTGTACCGCGGTTATGCAGGTC
CTTGGCCTAATCGACCCTTTAGTGCTTTCGGAAGTGTTCACGTGGAAGGGACGCAGTTTCCGGCC
CCAGAAACAGAATACCTCTAGAGCTACGACTATGATTTGCGCCTACAGGGCCTCGAGCGGAACGC
CCTAACGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTC
CGACCGAAGGGAGGAGTTGGAGGAGTTGGGTGGGTGCTATTGAAA
Found at i:16244 original size:24 final size:24
Alignment explanation
Indices: 16217--16265 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
16207 CCGTATTTCC
* *
16217 CATATACGTACAGAGCCTCTTTTT
1 CATACACGTACAGAGCCTATTTTT
*
16241 CATACACGTACAGAGCGTATTTTT
1 CATACACGTACAGAGCCTATTTTT
16265 C
1 C
16266 TTCCTCTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (24 bp):
CATACACGTACAGAGCCTATTTTT
Left flanking sequence: Indices 15717 -- 16216
CCTGAACGACAGATACGGATTCCCTTCACATGTTTGCACTTCCGAATCTCTTCAAATATGGATGT
ACAGATTTGTACAAATGATTCTCTTTCTTTTGATTTCCAAGAGATTTCTTGAGCTATTAGAGAAG
CACCTTGATAAGAAAAATTCGCTCTTACCGGCTTGATCAATATATTAGTGTTCGTTCGATTGGAC
GAGAAAGATTGCATTCTGGGCCACCAGGGTCTAATCTCTTTCCAGCAACAATGACTGCACATTCT
TCTTTTTCCTTCCATGAATCGGGCATCATTCCCCATAGACAGGCGCCCGCGAGCATCTATGAAGG
GAGAGGAACTGCGGCACGGGTCTCTTTTCCCAGGGATTGTACATTCACATTGGGCATCTCTCTCA
TGGGAGTAATTCCGGCAACACAAACCTCTAACTCCCGTACATAGAGCCTTATCTATAAACATACA
TTCCTTTTCCGGATCCCTTTCCATATATGTACATTCCGTATTTCC
Right flanking sequence: Indices 16266 -- 16765
TTCCTCTTTGTGAACCTAGGCCTTTTAAAGTTCCCGCCGCCGGTAGTATGCTTAGAACAAAACGC
TGTCACAGAATTGTCGTCAGGTGTGTTAACTGTAGTAGGGTCAAAATGAATTTTGTTTTTCATTC
CAAAAAAGGATTCCACAATCAAGGGCATAGTATGCGCAGTTGCTGCGAAAAGTCTATTTTTCGGA
GGCCGAGGCTGGCCCTTTAGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCTTCCAACCGCT
GACTCTAAGGAATCTATTCTGAATCTTTTGTATCGATGGTGATTTATTAGGGTATCCGGAGTAGT
GTTTTTTCCCTACGCGTTTACTTCCCTCTGCCCATTGCAGCTCTCTCGCTTCTCCGTCGTATGTA
CAACCTATACCCTTTATTTCTGTATCGTCCGTACCGTCAGCCCCTTTGTCAAATTTTCCTGTCTC
GAGGCGGCTAAGGCCTGTAGGCCTTGATTGGCGTCGTCGACGATG
Found at i:20228 original size:70 final size:71
Alignment explanation
Indices: 20128--20286 Score: 257
Period size: 70 Copynumber: 2.3 Consensus size: 71
20118 CGGGCAAAGT
*
20128 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGGGC
1 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGAGC
* *
20193 -TTTGC
66 GGTAGC
* * *
20198 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTGGGGCGGCCGCCCTGTCCGAGC
1 GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGAGC
20263 GGTAGC
66 GGTAGC
20269 GAGGACAACTCCCCGAGC
1 GAGGACAACTCCCCGAGC
20287 TTTAAAGGAG
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
70 61 0.74
71 21 0.26
ACGTcount: A:0.16, C:0.35, G:0.39, T:0.10
Consensus pattern (71 bp):
GAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGAGC
GGTAGC
Left flanking sequence: Indices 19628 -- 20127
GTTGTCCCGCCTCAAGACGCAAAGGGTTCGGCAGGGGGGTGCTCCGCACCCCCCGCGGGTAGCGC
GTAGCGCTACCCTGCCCCCTTCTAGAATTCGGAGGTAATAGTTTTTTTGTTGTTCCCCCATCTAT
TGTTGCTTTCTTATCCTGTTCTGCAACAAGTCCTCTTATTTAGGCCCTCTAGCCCGAGTCCTCAA
CGCCCTCCCCAGATCGAACCGGAGTTTAGGTATAGAGCTTGCCGGACCAAGCGTAGCCGGCCCCC
CGCCAAATGCTTTCCTCTCTTCGTAGGTCAAGCAGCGACGCTGCTTGCCCCGCTAGCAGATGGTT
TTTTTCATCAGCGGGAGACGTTTTGCTTAGCCTTACGGCGCTCTCGTTTCTGAGCATAGCGATGA
TTCAACGAGTTTAAAGGCGGTTTCACGCCTTCTAGGCCCGCCTAGGCAAGGCCTATCGACTTCCC
CTGTCGTCCGGTAAACGAAGTTATTTTTCAGGGTCCGGGCAAAGT
Right flanking sequence: Indices 20287 -- 20786
TTTAAAGGAGTTGGAAGAAAAGTCCAAAGCTAAGCGCTTTTAAGGGCCCTCCGATAGGAGGGCAA
CTCCGACCGATAGGGAGGAGTTGTCCTCACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATT
TAGTTTCAATTCAATTTAAGGCCTCCTTTCGGAGGACCCGTGAAGGGCCCTCCGATAGGAGGGCA
ACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAG
GACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGT
CCGGAGGACAACTCCGACCGAAGGGAGGAGTTGGCCAACTCCGAATTCCGATAGGGAGGAGTTGG
TCCGACCTGTAGGGAGGAGTTGGCCTTTTTTAAAAGGCGGGAAGC
Found at i:20641 original size:9 final size:9
Alignment explanation
Indices: 20629--20675 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
20619 CCGACCGAAG
20629 GGAGGAGTT
1 GGAGGAGTT
20638 GGAGGAGTT
1 GGAGGAGTT
20647 GGAGGAGTT
1 GGAGGAGTT
*
20656 GGAGGAGTG
1 GGAGGAGTT
20665 GGAGGAGTT
1 GGAGGAGTT
20674 GG
1 GG
20676 TCCGGAGGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.21, C:0.00, G:0.60, T:0.19
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 20129 -- 20628
AGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTAGAGCGGCCGCCCAGTCCGGGCT
TTGCGAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTGGGGCGGCCGCCCTGTCC
GAGCGGTAGCGAGGACAACTCCCCGAGCTTTAAAGGAGTTGGAAGAAAAGTCCAAAGCTAAGCGC
TTTTAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGTCCTCACTTCGTTC
GGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGCCTCCTTTCGGAGGAC
CCGTGAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAG
Right flanking sequence: Indices 20676 -- 21175
TCCGGAGGACAACTCCGACCGAAGGGAGGAGTTGGCCAACTCCGAATTCCGATAGGGAGGAGTTG
GTCCGACCTGTAGGGAGGAGTTGGCCTTTTTTAAAAGGCGGGAAGCGCTAGCGCACCACCCGGCA
GCACTCGACGCTGCTGCCTGCCGGTTGCCCCGGCAACTGACCGTATGGTTGAGGTTCCGCCCTAG
GACTTTTGGTGGTCCAAAGGACCTCTAGGCAGTTCCTTTGGATACTCGACTGTGGCCAGGTTCCG
GGGTTTAAAGGTATAAAATGCTGATAGGCACGACCGGAAACTTCTCTCTCCCTTCGGCTTTCCGA
GGCACTTCTATATGAAGTGGAAAGCGCTAGCGCTTTATCCCCGACTGAACTTCGTAAAGAACCTT
TAATTTAATTTCATTGAAAATTAAAGCCCTCCCGCACGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTACTTTAATTTAATTTAATTGAAAATTAAAGTAA
Found at i:20715 original size:27 final size:30
Alignment explanation
Indices: 20685--20741 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
20675 GTCCGGAGGA
20685 CAACTCCG-A-CCGA-AGGGAGGAGTTGGC
1 CAACTCCGAATCCGATAGGGAGGAGTTGGC
20712 CAACTCCGAATTCCGATAGGGAGGAGTTGG
1 CAACTCCGAA-TCCGATAGGGAGGAGTTGG
20742 TCCGACCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.31
28 1 0.04
30 4 0.15
31 13 0.50
ACGTcount: A:0.26, C:0.23, G:0.35, T:0.16
Consensus pattern (30 bp):
CAACTCCGAATCCGATAGGGAGGAGTTGGC
Left flanking sequence: Indices 20185 -- 20684
GTCCGGGCTTTGCGAGGACAACTCCCCGAGCCGGGTCGGGGAAGCGCGTAGCGCCTGGGGCGGCC
GCCCTGTCCGAGCGGTAGCGAGGACAACTCCCCGAGCTTTAAAGGAGTTGGAAGAAAAGTCCAAA
GCTAAGCGCTTTTAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGAGGAGTTGTCCTC
ACTTCGTTCGGACCCCTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGCCTCCTT
TCGGAGGACCCGTGAAGGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTG
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGG
AGGAGTTGGAGGAGTTGGAGGAGTGGGAGGAGTTGGTCCGGAGGA
Right flanking sequence: Indices 20742 -- 21241
TCCGACCTGTAGGGAGGAGTTGGCCTTTTTTAAAAGGCGGGAAGCGCTAGCGCACCACCCGGCAG
CACTCGACGCTGCTGCCTGCCGGTTGCCCCGGCAACTGACCGTATGGTTGAGGTTCCGCCCTAGG
ACTTTTGGTGGTCCAAAGGACCTCTAGGCAGTTCCTTTGGATACTCGACTGTGGCCAGGTTCCGG
GGTTTAAAGGTATAAAATGCTGATAGGCACGACCGGAAACTTCTCTCTCCCTTCGGCTTTCCGAG
GCACTTCTATATGAAGTGGAAAGCGCTAGCGCTTTATCCCCGACTGAACTTCGTAAAGAACCTTT
AATTTAATTTCATTGAAAATTAAAGCCCTCCCGCACGGCCTTTAGGCACTCGACCGATAGGGAGA
GGGTCGGAGTTACTTTAATTTAATTTAATTGAAAATTAAAGTAAACCCGCTCCTCTCCTTTCAGT
CGAGTGTATGTCAACCTGGTGTACCCGGGGGTCCAGGTTGACATA
Found at i:23801 original size:9 final size:9
Alignment explanation
Indices: 23787--23824 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
23777 TCGCCTCGGA
23787 CCAACTCCT
1 CCAACTCCT
23796 CCAACTCCT
1 CCAACTCCT
23805 CCAACTCCT
1 CCAACTCCT
23814 CCAACTCCT
1 CCAACTCCT
23823 CC
1 CC
23825 CTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 23287 -- 23786
CTGTGCTTCGGAGACACGATTGAAGCCCAAGGATTATTGGTGCCGGTTGAACCCCGGGCTCCTTT
CACGACATGCTCTGGTCTCCCTTCGTTCCTCGAGGTGCCTTCCGTCGCTGTGGTATTATTTTAGC
GTTAGAATAAGTGGTGTCCGTCTCGTCGCGGACATCTGCAACGTCCCGACCGACATGATGCGGCG
GGCAATTCATTCGGTGACTTTTTCTTCGCGGTCGCCCTCACTAAACCAACTTGAATCTGAACTAC
GATTCAGATTAAGTCTGACCGAAATCGGATTGACTTTTTGTGCCATATCTTACTATCGTACCTTA
TTTCTTGGGTTGGGGGGGGCTAACGCGTTTTCCCCGCCGGGTTCTTCCTGTTAGGGAAGCTGGCC
AACTCCCCCCACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAG
GCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCCTCGGA
Right flanking sequence: Indices 23825 -- 24324
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCCTGGTTGTTTTTGAGGTTT
TTCGTGTAGAAGCAAACTCTCCGAATTTATGACCAACCTTTTCGTTCGTTATCCTCGAACGAACG
AAGACTTTTCCGGTATAGATTTGTGCATAGCAACCAACAAATTCGGGCAGGATAGAAGATCTACG
TGACCAAATTTTCCACTTGATCCTTTTGTTGTTTTTTGACATTTTTGCCTCGAAAAAAGGGCCTT
TCCATACAGATCGTGCCGTGAACTAATTTTGGCGTTTTCTAACCA
Found at i:23861 original size:34 final size:34
Alignment explanation
Indices: 23823--24035 Score: 417
Period size: 34 Copynumber: 6.2 Consensus size: 34
23813 TCCAACTCCT
23823 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23857 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23891 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23925 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23959 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
23993 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
24027 CCCTATCGG
1 CCCT-TCGG
24036 AATTCGGAGT
Statistics
Matches: 178, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
34 174 0.98
35 4 0.02
ACGTcount: A:0.09, C:0.33, G:0.29, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 23323 -- 23822
TTGGTGCCGGTTGAACCCCGGGCTCCTTTCACGACATGCTCTGGTCTCCCTTCGTTCCTCGAGGT
GCCTTCCGTCGCTGTGGTATTATTTTAGCGTTAGAATAAGTGGTGTCCGTCTCGTCGCGGACATC
TGCAACGTCCCGACCGACATGATGCGGCGGGCAATTCATTCGGTGACTTTTTCTTCGCGGTCGCC
CTCACTAAACCAACTTGAATCTGAACTACGATTCAGATTAAGTCTGACCGAAATCGGATTGACTT
TTTGTGCCATATCTTACTATCGTACCTTATTTCTTGGGTTGGGGGGGGCTAACGCGTTTTCCCCG
CCGGGTTCTTCCTGTTAGGGAAGCTGGCCAACTCCCCCCACTCCTCCCTTCGGTCGGAGTTGTCC
TCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCT
CGCCTCGGACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCT
Right flanking sequence: Indices 24036 -- 24535
AATTCGGAGTTGCCCTCCTATCGGAGGGCCCTGGTTGTTTTTGAGGTTTTTCGTGTAGAAGCAAA
CTCTCCGAATTTATGACCAACCTTTTCGTTCGTTATCCTCGAACGAACGAAGACTTTTCCGGTAT
AGATTTGTGCATAGCAACCAACAAATTCGGGCAGGATAGAAGATCTACGTGACCAAATTTTCCAC
TTGATCCTTTTGTTGTTTTTTGACATTTTTGCCTCGAAAAAAGGGCCTTTCCATACAGATCGTGC
CGTGAACTAATTTTGGCGTTTTCTAACCACTGTTTTGAATCCACTTTTGGTGGGCTTTCCCCAAG
GTGACACCGAAGGTCTACCTCCGGAAGTGCGTCCTTCACCTCCTCCATGAGGATGATCAACTGGA
TTCATAGCAACACCCCGAACAATGGGGCGTCTGCCTAACCACCGGCTTTCTCCTGCTTTGTCAAG
CTTACGTGTACCATGGTTGGGATTGGAAACTATACCAATAGTAGC
Found at i:27280 original size:21 final size:21
Alignment explanation
Indices: 27254--27307 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
27244 CCTATCGGGC
* *
27254 ACTTTAAAGTCGCGTATTTTA
1 ACTTTAAAGTCACGTACTTTA
27275 ACTTTAAAGTCACGTACTTTA
1 ACTTTAAAGTCACGTACTTTA
27296 ACTTTAAAGTCA
1 ACTTTAAAGTCA
27308 AGTATTCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (21 bp):
ACTTTAAAGTCACGTACTTTA
Left flanking sequence: Indices 26754 -- 27253
TGCATGCTTCATCCAAAGGCCTTTCATCCGCCTCCGGCCCGTTTTTAAAATGCTTGGGTTCGAAG
ATTCTTTTCTTGTTTTGCTCCAAAAAAGCAGCCCGGATTCTCTGCGCCCAGAGAACGCTATGCGT
TCTCCACCTTCGCGGCGCCTTCGTTTTAGGAAGCGCTTTGCGCCGAACAGGACGTAGCACCCCTT
CGATCCATTATACCGAAGCAATCCAAGAAGAACGGTTTGGGTCATATTCGATTCTTTCTACAACG
CCCAAGGACGAAGTGCTTCGTTTCAAATCAATTCTTCGCTGCAATCGCTTTGAGCCACCCCCTCG
GTGAAAAACAGTAATCCGCCCTGATGGATTTCTCCCAGCAGACCTCCTTAAACTATTAGTTAATC
TCTTCAGTGCTTCTCGGCCACTTATCATTGATTCGGGGTTTTTTACTTTCTTCGAAGAAGCATCA
ATGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTATCGGGC
Right flanking sequence: Indices 27308 -- 27807
AGTATTCTACCGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTA
GGCCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTTGTCCTCGCCTCGGACCCTTT
AAAGCCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGAATTCCGAAGGGTCC
GAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGTCCGGGC
GAAGCGAGGACAACTCCCCGAGCCGGGGAGTTGGGGTGTGACGACGTCCACACAGCAGGTGGTTC
TTCCGCTTCGCGGAAGCCGCCAACGTCATCAATCCATGTACTAGAGGATTGATTGCTCCGCACTT
AGCCATGAGATATATCACGTAGCTGATGCTACCCATGATGAGTGGGCCGCCTTCCTCCGGCCGGT
TAGGCTAGGTTGAGTGGGCCTTCTACAGTGGTTGGCTACGAATAC
Found at i:27495 original size:37 final size:37
Alignment explanation
Indices: 27445--27525 Score: 162
Period size: 37 Copynumber: 2.2 Consensus size: 37
27435 TTTAAAGCCA
27445 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
27482 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
1 ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
27519 ACTCCGA
1 ACTCCGA
27526 CCGAAGGGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (37 bp):
ACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACC
Left flanking sequence: Indices 26945 -- 27444
CCTTCGATCCATTATACCGAAGCAATCCAAGAAGAACGGTTTGGGTCATATTCGATTCTTTCTAC
AACGCCCAAGGACGAAGTGCTTCGTTTCAAATCAATTCTTCGCTGCAATCGCTTTGAGCCACCCC
CTCGGTGAAAAACAGTAATCCGCCCTGATGGATTTCTCCCAGCAGACCTCCTTAAACTATTAGTT
AATCTCTTCAGTGCTTCTCGGCCACTTATCATTGATTCGGGGTTTTTTACTTTCTTCGAAGAAGC
ATCAATGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTATCGGGCACTTTAAAGTCGCGTA
TTTTAACTTTAAAGTCACGTACTTTAACTTTAAAGTCAAGTATTCTACCGGTTTTCGCGACGGCG
CTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGCCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTTGTCCTCGCCTCGGACCCTTTAAAGCCA
Right flanking sequence: Indices 27526 -- 28025
CCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGTCCGGGCGAAGCGAGGACAACTCCCCGAGC
CGGGGAGTTGGGGTGTGACGACGTCCACACAGCAGGTGGTTCTTCCGCTTCGCGGAAGCCGCCAA
CGTCATCAATCCATGTACTAGAGGATTGATTGCTCCGCACTTAGCCATGAGATATATCACGTAGC
TGATGCTACCCATGATGAGTGGGCCGCCTTCCTCCGGCCGGTTAGGCTAGGTTGAGTGGGCCTTC
TACAGTGGTTGGCTACGAATACAGAGAGAGGTTTCTTCCTATTCCTTCCAATCAACTGCATAGGT
GCCGGGAAGCGTAGCTTCCCGCCGTAGGCGGGGGGTTAAAAGTAGCGCCCCCCTGCCCCACTATA
GTGCTGGCCGGCAAGGCCCGCCACTATAGTGCCTCAGTAGGAAGCTAAGCACACTGCATCACTAG
AGTTGTATGCAGCCACTATTCTATAGGGGGGAAACAAACTTAAAT
Found at i:28363 original size:34 final size:34
Alignment explanation
Indices: 28325--28389 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
28315 CCTCCCGGTA
28325 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
28359 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
28390 CTTTTAAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.09, C:0.32, G:0.31, T:0.28
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 27825 -- 28324
TATTCCTTCCAATCAACTGCATAGGTGCCGGGAAGCGTAGCTTCCCGCCGTAGGCGGGGGGTTAA
AAGTAGCGCCCCCCTGCCCCACTATAGTGCTGGCCGGCAAGGCCCGCCACTATAGTGCCTCAGTA
GGAAGCTAAGCACACTGCATCACTAGAGTTGTATGCAGCCACTATTCTATAGGGGGGAAACAAAC
TTAAATTAATTGAAAATTAATGACGGGAAGCCGGCCACAACGAACAGCTTCGGAAGAGGGGAGGG
GGCACCCCCCGCCGGGCAGTTAAAAGTAGCGCTGCCCTGGCCAACTCCTCCAACTCCTCCCGGTA
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGGCCTTTTAAAAGGCCGCAAGAACCT
TTAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGAGGTTTTCGCGACTTTAAAAGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 28390 -- 28889
CTTTTAAAGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAAC
TCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGACTT
ACTTAAGTTTAAATTAAATTAAATTAAAGGTTCTTGGCCCACTCCTCCCTCTCGGAATTCGGAGT
TGTCCTCCTGTCGGAGGACCCTGTTCGAAGCATTTTCATCGCACCGGCTTTCGGCAGGGCAGCCC
TGAGGCTGACCTTTAAAGGGGGTTTAAATACGCGCCCCCCTGCCTTTGGTGGGGCGTAGCCGGCG
CGTAGTGCTCCCACAATGGTTCCGCTAAAGTCCCACCTGCCGGGCTTGCCAGGGCCTGCCTTGGA
TTCGTGCAAACACAGTGTGATTCCGCACTTCTGTAGATAAGGTCGAAGCAATTCAACTCATCCTT
TAAAAGTCCGAGGCGAGGACCACTCCGACCTACCGGGAGGAGTTG
Found at i:30044 original size:35 final size:35
Alignment explanation
Indices: 29998--30066 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
29988 ACGGCCGCTG
29998 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
30033 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
30067 GATTAACCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 29498 -- 29997
CCGTCCCCCCCATGCCTGCTGGGTGGGGAGACTTTCCTTTGCCCCAAAAGGCAAAAATGCGTTGA
GCATTAAAGCCCAACAACTCCTTCAAACCCCACCCACTTCCTTGTGGGTGGTGGTGGGGCTTTAG
CCACTGGCTGGGGTAGGGGCCGGGGTGCGGACCCGGGCGGGTAGCGCGTAGCGCTACCCTGGCCC
CAGCAAGGGTAGGGAGTTGGCCTCCGCTTCCTTCTGATTATGCTGAGCCCCGGCCGGCAGACAGA
CTCTCTCGAAAGTGAGCCTCCCCGGCAGACAGGGACTTTGGTCAGATACAGATGGTTTATGCTAG
CTTTCAGGAGTCTTAGCAAGATCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCACTTCGTTC
GGACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCTAAAAACGTACGTTTAAA
TTAAATTAAATTAAAGGTTCTTTGGGTTCGCTCGGACGGCCGCTG
Right flanking sequence: Indices 30067 -- 30566
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGGAGCGCTTTAAAA
GCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTACGCGCTCCTTTAAAGGGCCAACTCCC
CCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGC
ACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGACCAACTCCTCCAACTCCCCCCCCTCC
TCCCACTCCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGG
AGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGA
Found at i:30315 original size:9 final size:9
Alignment explanation
Indices: 30304--30348 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
30294 CTTCGGACCA
*
30304 ACTCCTCCA
1 ACTCCTCCC
*
30313 ACTCCCCCC
1 ACTCCTCCC
*
30322 CCTCCTCCC
1 ACTCCTCCC
30331 ACTCCTCCC
1 ACTCCTCCC
30340 ACTCCTCCC
1 ACTCCTCCC
30349 TTCGGTCGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.11, C:0.69, G:0.00, T:0.20
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 29804 -- 30303
TACAGATGGTTTATGCTAGCTTTCAGGAGTCTTAGCAAGATCAACTCCTCCCTCTCGGAATTCGG
AGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGG
CTAAAAACGTACGTTTAAATTAAATTAAATTAAAGGTTCTTTGGGTTCGCTCGGACGGCCGCTGA
GGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATTTAATTTCCTTGAAAATT
AATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCGGAGCGCTTTA
AAAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTACGCGCTCCTTTAAAGGGCCAACT
CCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTA
GGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGACCA
Right flanking sequence: Indices 30349 -- 30848
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGC
CTTACGGCTTCCCGCCGGGTGGGCTGTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAA
CGGAGTTGGACCATGAGCTTCAGTTGAATCCAACTGGAAGGATTTTCTCTCCTATATACATGAAT
TCGGGTGGCCGATATACATGAATTTGGGTGGCCGATCACACAACATATTTGCGTATAATAGAACC
CTTCGCCCAGCACTCAAAACCAATGAACGTACGTGGGCGCAGGAA
Found at i:30432 original size:35 final size:35
Alignment explanation
Indices: 30352--30555 Score: 358
Period size: 35 Copynumber: 5.9 Consensus size: 35
30342 TCCTCCCTTC
* *
30352 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30386 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30421 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30456 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
* *
30491 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
30525 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
30556 TATCGGTCGG
Statistics
Matches: 165, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
34 63 0.38
35 102 0.62
ACGTcount: A:0.10, C:0.30, G:0.32, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 29852 -- 30351
TCCCTCTCGGAATTCGGAGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTAGT
TTCAATTCAATTTAAGGCTAAAAACGTACGTTTAAATTAAATTAAATTAAAGGTTCTTTGGGTTC
GCTCGGACGGCCGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACTTTAATT
TAATTTCCTTGAAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTT
AAAGTCGGAGCGCTTTAAAAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTACGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGACCAACT
CCTCCAACTCCCCCCCCTCCTCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 30556 -- 31055
TATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGCCTTACGGCTTCC
CGCCGGGTGGGCTGTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAACGGAGTTGGACC
ATGAGCTTCAGTTGAATCCAACTGGAAGGATTTTCTCTCCTATATACATGAATTCGGGTGGCCGA
TATACATGAATTTGGGTGGCCGATCACACAACATATTTGCGTATAATAGAACCCTTCGCCCAGCA
CTCAAAACCAATGAACGTACGTGGGCGCAGGAAGCGTAGCGCAAGCCCCACTTCACGCTCAGGTT
TTGTGGACTGAAGAGCACGGGACCAATGAACGTACGTGTGCGCAGGAAGCGCGTAGCGCTCAGGT
TTGTGGCTTCGGAGCCGGAAACTGGAGAGCACGAGATGTGGTGCCGGTAGGCTGCTTTGGAAGTG
TAACGTGCATGACGAGCCGCAGTCGTGCATGCCGATAATTCCGCT
Found at i:30564 original size:104 final size:103
Alignment explanation
Indices: 30346--30568 Score: 358
Period size: 104 Copynumber: 2.1 Consensus size: 103
30336 TCCCACTCCT
* *
30346 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTC
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGTAGGTCGGAGTGGTCCTCACTTCGTTC
30411 GGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
66 GGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* *
30449 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGT
1 CCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC-GTAGGTCGGAGTGGTCCTCACTTCGT
* *
30514 TCGGACCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
64 TCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
30553 CCCTATCGGTCGGAGT
1 CCCT-TCGGTCGGAGT
30569 TGCCCTCCTA
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
103 3 0.03
104 74 0.68
105 32 0.29
ACGTcount: A:0.10, C:0.30, G:0.32, T:0.27
Consensus pattern (103 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGTAGGTCGGAGTGGTCCTCACTTCGTTC
GGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 29846 -- 30345
AACTCCTCCCTCTCGGAATTCGGAGTTGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAA
TTTAGTTTCAATTCAATTTAAGGCTAAAAACGTACGTTTAAATTAAATTAAATTAAAGGTTCTTT
GGGTTCGCTCGGACGGCCGCTGAGGTTACTTTAATTTAATTTCCTTGAAAATTAATTAGGTTACT
TTAATTTAATTTCCTTGAAAATTAATGATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGAC
CGCTTTAAAGTCGGAGCGCTTTAAAAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGCTA
CGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCCCTCCTCCCTTCGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTTCGGA
CCAACTCCTCCAACTCCCCCCCCTCCTCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 30569 -- 31068
TGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGCCTTACGGCTTCCCGCCGGGTGGGCT
GTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAACGGAGTTGGACCATGAGCTTCAGTT
GAATCCAACTGGAAGGATTTTCTCTCCTATATACATGAATTCGGGTGGCCGATATACATGAATTT
GGGTGGCCGATCACACAACATATTTGCGTATAATAGAACCCTTCGCCCAGCACTCAAAACCAATG
AACGTACGTGGGCGCAGGAAGCGTAGCGCAAGCCCCACTTCACGCTCAGGTTTTGTGGACTGAAG
AGCACGGGACCAATGAACGTACGTGTGCGCAGGAAGCGCGTAGCGCTCAGGTTTGTGGCTTCGGA
GCCGGAAACTGGAGAGCACGAGATGTGGTGCCGGTAGGCTGCTTTGGAAGTGTAACGTGCATGAC
GAGCCGCAGTCGTGCATGCCGATAATTCCGCTTAGTGCATGACGA
Found at i:30757 original size:23 final size:23
Alignment explanation
Indices: 30727--30774 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
30717 TTTCTCTCCT
30727 ATATACATGAATTCGGGTGGCCG
1 ATATACATGAATTCGGGTGGCCG
*
30750 ATATACATGAATTTGGGTGGCCG
1 ATATACATGAATTCGGGTGGCCG
30773 AT
1 AT
30775 CACACAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (23 bp):
ATATACATGAATTCGGGTGGCCG
Left flanking sequence: Indices 30227 -- 30726
GTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTG
TCCTTCGGACCAACTCCTCCAACTCCCCCCCCTCCTCCCACTCCTCCCACTCCTCCCTTCGGTCG
GAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAG
GTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAGGTTGGCCAGGCAAGCCTTACGGC
TTCCCGCCGGGTGGGCTGTAGCCCAGCCTGCCCCATCCGTAAAGCCTTCTCTTCCAACGGAGTTG
GACCATGAGCTTCAGTTGAATCCAACTGGAAGGATTTTCTCTCCT
Right flanking sequence: Indices 30775 -- 31274
CACACAACATATTTGCGTATAATAGAACCCTTCGCCCAGCACTCAAAACCAATGAACGTACGTGG
GCGCAGGAAGCGTAGCGCAAGCCCCACTTCACGCTCAGGTTTTGTGGACTGAAGAGCACGGGACC
AATGAACGTACGTGTGCGCAGGAAGCGCGTAGCGCTCAGGTTTGTGGCTTCGGAGCCGGAAACTG
GAGAGCACGAGATGTGGTGCCGGTAGGCTGCTTTGGAAGTGTAACGTGCATGACGAGCCGCAGTC
GTGCATGCCGATAATTCCGCTTAGTGCATGACGATAATTCCTTTTCTAAAGGGCCGTCCCATAAA
TTCTAGGCAGAGAATGTGCCGCTTGTGAACGTACGTGGGCGCAGGAAGCGCGTAGCGCAAGCCCG
GCCACTTCACGCACAGGTTCTGGCCCGGAAACTGAAGAGCACGTTGAAGTTCGCCGGTAGGCTAC
TTTGGAAGTAACGTGCATGACCACCTTGACGATAATTCCGTAGCG
Found at i:31972 original size:35 final size:35
Alignment explanation
Indices: 31928--31996 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
31918 GCGGTTAATC
31928 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
31963 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
31997 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 31428 -- 31927
CCCTACTTCTATGTGTTTTCGGTAAAAACGCTACGCGCTGCCCTTGCCAGGCCGGAGAAGGCCGA
GGAACGATAGGGGGCCCCCACCTACCTACCCACCACCACCACCCACAAAGTTGGTGGGTCAATGT
GGTATGTAAGGCCACCCACTTCTTCGTTTAAAAGGTGGCTAGGCTGATCAGGGTCCGACCGAAGG
GTCCGAACGAAGTGAGGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTTAAAAGGGGTC
CGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCC
GAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGGGGAGTGGGGGGAGTTGGCCCTTTAAAGG
AGCGCGTAGCGCGAAAACCTGAGTAATTTGATTGAATTTAAGCGCTTTTAAAGCGCTCCGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 31997 -- 32496
CAGCGGCCGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGAGGAGTGGGGGGAGTTGGCGAGGGTGGCCCGCCCTTGCCAGGGAAGCGCGC
GCTTACCTGCCCCCCAACTTCTGAAGTTGTTGGCCTCTCCGTCGATTTTCCGCTGCCCGCGAACA
CTTCTGAAGTGTGCAGAGCTCACGCAACTCCGAGGGGTGCCAATCAAGTATATAGATAAGACGAC
CTTCATAGGGGCATAGAGTCTTTCTAACCACCCATTTGTCGTTCCAAGAGACTACTGAGGGGCAG
GTCAGGAACAATGGGGCTTGAACAAACATGAGGGGAAGTTGTTGATCGATTCCGGGAAGCTGCCG
GCATAAAAGCAATGGGTTTCCTTCCAACCCATTATTTCTACCCCGGGACGGGATTCACCGACCAT
CCACCCAGATCGGAAGAGATGGAAGTGGGGATCCGATCATTTCAA
Found at i:32802 original size:35 final size:35
Alignment explanation
Indices: 32763--32904 Score: 259
Period size: 35 Copynumber: 4.1 Consensus size: 35
32753 CCCCACTCCT
32763 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
32798 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
* *
32833 CCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
32867 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
32902 CCC
1 CCC
32905 TTCGGCCTTT
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
34 32 0.31
35 70 0.69
ACGTcount: A:0.11, C:0.31, G:0.32, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 32263 -- 32762
AGGGGCATAGAGTCTTTCTAACCACCCATTTGTCGTTCCAAGAGACTACTGAGGGGCAGGTCAGG
AACAATGGGGCTTGAACAAACATGAGGGGAAGTTGTTGATCGATTCCGGGAAGCTGCCGGCATAA
AAGCAATGGGTTTCCTTCCAACCCATTATTTCTACCCCGGGACGGGATTCACCGACCATCCACCC
AGATCGGAAGAGATGGAAGTGGGGATCCGATCATTTCAATATCTGCTGTTGAGGACTCGATTCCA
GGTATTCATAAAGCCTCAAATCTTTCCTTCTCTAGATCCCGATCCATGGGGGCAGTCACCATCTG
GGCATTCAATACCGACTTTAAAGGCCTGTTCTGGTCATCGGACTTAGTTCTTCCTCACCGACCGA
GTCATCGGGCCAACTCCGACCTACCGGGAGGAGTTGGCCCGAGGAGCCAAATAAGAGAAAGGAGA
GAAAGAAGCAAAAGCGTACAGGCGGAGCCAACTCCCCCCACTCCT
Right flanking sequence: Indices 32905 -- 33404
TTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCT
ATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAGAAGGTTCACTAACGCTCACCCTATTTGGT
GAGTGGCTCGCCCGAGTGTCCGAGAGATTCCTTTGCAGAGAACGGAGCTTCTTTTGTATACGCAA
TTTCACCGTTCCCCTGTAGCAATTCTTCACTGGCAAGACTCGGCTAACGAGTGTGACTAGGCCAG
TCATTGACGGGACAGCCTCTGCGGCTTTCCTTTTAGCTCCTCCGTTTCGCCCGCAGCACAACCAC
GCACGTGTTGGGACGGCTAGCATGCAGAACCCAAAGAGGGTAAAGGCCCAGGAAAGACATTTTAA
AAGGATCTCCTCTCAAGACTGGAAAGCAACACGCAGCACCGGCAACACTTATTGCACCCACATCA
CAACCAATAGCAGATGACAGGCGCCACCTCAACCTAGAAGTGGAG
Found at i:32881 original size:69 final size:69
Alignment explanation
Indices: 32770--32909 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
32760 CCTCCCGGTA
32770 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
32835 CTTC
66 CTTC
32839 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
32904 CTTC
66 CTTC
32908 GG
1 GG
32910 CCTTTAGGCA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.10, C:0.30, G:0.33, T:0.27
Consensus pattern (69 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
CTTC
Left flanking sequence: Indices 32270 -- 32769
TAGAGTCTTTCTAACCACCCATTTGTCGTTCCAAGAGACTACTGAGGGGCAGGTCAGGAACAATG
GGGCTTGAACAAACATGAGGGGAAGTTGTTGATCGATTCCGGGAAGCTGCCGGCATAAAAGCAAT
GGGTTTCCTTCCAACCCATTATTTCTACCCCGGGACGGGATTCACCGACCATCCACCCAGATCGG
AAGAGATGGAAGTGGGGATCCGATCATTTCAATATCTGCTGTTGAGGACTCGATTCCAGGTATTC
ATAAAGCCTCAAATCTTTCCTTCTCTAGATCCCGATCCATGGGGGCAGTCACCATCTGGGCATTC
AATACCGACTTTAAAGGCCTGTTCTGGTCATCGGACTTAGTTCTTCCTCACCGACCGAGTCATCG
GGCCAACTCCGACCTACCGGGAGGAGTTGGCCCGAGGAGCCAAATAAGAGAAAGGAGAGAAAGAA
GCAAAAGCGTACAGGCGGAGCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 32910 -- 33409
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGTTCGGACCCTATCGG
TCGGAGTTGCCCTCCTATCGGAGGGCCCTAGAAGGTTCACTAACGCTCACCCTATTTGGTGAGTG
GCTCGCCCGAGTGTCCGAGAGATTCCTTTGCAGAGAACGGAGCTTCTTTTGTATACGCAATTTCA
CCGTTCCCCTGTAGCAATTCTTCACTGGCAAGACTCGGCTAACGAGTGTGACTAGGCCAGTCATT
GACGGGACAGCCTCTGCGGCTTTCCTTTTAGCTCCTCCGTTTCGCCCGCAGCACAACCACGCACG
TGTTGGGACGGCTAGCATGCAGAACCCAAAGAGGGTAAAGGCCCAGGAAAGACATTTTAAAAGGA
TCTCCTCTCAAGACTGGAAAGCAACACGCAGCACCGGCAACACTTATTGCACCCACATCACAACC
AATAGCAGATGACAGGCGCCACCTCAACCTAGAAGTGGAGGCATC
Found at i:33868 original size:48 final size:47
Alignment explanation
Indices: 33841--33948 Score: 189
Period size: 48 Copynumber: 2.3 Consensus size: 47
33831 TCGGTTAGGC
33841 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTA
1 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCC-A
33889 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTA
1 GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCC-A
*
33937 GGGTGGAGACGC
1 GGGTGAAGACGC
33949 TCTCCTCGGA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.19, C:0.30, G:0.40, T:0.12
Consensus pattern (47 bp):
GGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCA
Left flanking sequence: Indices 33341 -- 33840
ACTTATTGCACCCACATCACAACCAATAGCAGATGACAGGCGCCACCTCAACCTAGAAGTGGAGG
CATCGACCCGCACCCACACCTGCAGGGAGCACAGCTCCCCCGCCCTCCCCCGTAGCCCCCCGCAT
CCAGCCGCCGCACCCTAGCATCCTAGCTTTGGCTTCTGCCTAGCTTCCTTAGCGCTTCCGCTTCA
TCCGCTTCTGCCCGACGAGCATCCGCTTCATCCGCGGCCGCTTTAGCTAACGCCCTAGCAGCCCA
GCAACCCTTTAGGGCGTTCTTACCCCCTGCTCCACGTAGGCGGGTAGGCCCACTCACGTTGGGAA
CCGAATTAGTAAGTGAACCTAATTGGCACTAAACCATTAAGGGAACCATTAGTGAGTGGGCCTAA
TTAGGTGTGAGTGCTCTCAATGGCGGTGCGAGGTGTTTCCTCTTAGTTAGGTGTTAGGTGCAACT
AAGATTTGGTGCCCCTGATGCCGATTCAGCCAAGGTCGGTTAGGC
Right flanking sequence: Indices 33949 -- 34448
TCTCCTCGGAGTGCCCCTACTCGGAGGGCCAGGGCAGCCCTAGGGCTGGCCGCTCACGTAGGTCT
TTAGACACTCGACCGAAGGGAGAGGGCCTTAGAAAGGCCTTTTAAAATGCCCTTTCCCTTCCCTT
TCCCTCCCCTAGAAAGGCTTTCAACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAA
TTTTCAATTAATTGAAAATTCCTTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTT
CTTTGCTTGCTTCAAATTCAATGAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTG
CTTCAAATTAAATTAATCAAAAAACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATT
TAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTGGTCCTTCGGACCAACTCCTCCAACTC
CTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACT
Found at i:34402 original size:9 final size:9
Alignment explanation
Indices: 34388--34425 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
34378 GTCCTTCGGA
34388 CCAACTCCT
1 CCAACTCCT
34397 CCAACTCCT
1 CCAACTCCT
34406 CCAACTCCT
1 CCAACTCCT
34415 CCAACTCCT
1 CCAACTCCT
34424 CC
1 CC
34426 CTTCGGTCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 33888 -- 34387
AGGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTAGGGTGGAGACGCTCTC
CTCGGAGTGCCCCTACTCGGAGGGCCAGGGCAGCCCTAGGGCTGGCCGCTCACGTAGGTCTTTAG
ACACTCGACCGAAGGGAGAGGGCCTTAGAAAGGCCTTTTAAAATGCCCTTTCCCTTCCCTTTCCC
TCCCCTAGAAAGGCTTTCAACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTT
CAATTAATTGAAAATTCCTTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTTCTTT
GCTTGCTTCAAATTCAATGAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTGCTTC
AAATTAAATTAATCAAAAAACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATTTAAT
TTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 34426 -- 34925
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTC
CTCCAACTCCTCCAACTCCTCCCACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCG
TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTT
CGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCG
Found at i:34563 original size:9 final size:9
Alignment explanation
Indices: 34549--34595 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
34539 GTCCTTCGGA
34549 CCAACTCCT
1 CCAACTCCT
34558 CCAACTCCT
1 CCAACTCCT
34567 CCAACTCCT
1 CCAACTCCT
*
34576 CCCACTCCT
1 CCAACTCCT
34585 CCAACTCCT
1 CCAACTCCT
34594 CC
1 CC
34596 CGGTAGGTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.19, C:0.60, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 34049 -- 34548
GGCCTTTTAAAATGCCCTTTCCCTTCCCTTTCCCTCCCCTAGAAAGGCTTTCAACAGAAAGGCCG
CGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTTCAATTAATTGAAAATTCCTTTAAAGCGCTAA
ATTGAATTAAATTAAATTCTATTAGAATTTCTTTGCTTGCTTCAAATTCAATGAATTTTCAATTA
ATTTAAGCAGCGCTATTAAATTAGAATTTGCTTCAAATTAAATTAATCAAAAAACTCAAATTTTT
CACCAACTCTTTAAAGCGGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGG
AGTGGTCCTTCGGACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGT
TGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTT
GTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 34596 -- 35095
CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGG
AGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAG
AGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGA
GGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCT
GAACCCGTCGTTCCGACGTCACTCAGAATTCTGTATATAGACTCCAGCCTCGAGAAGCGAGTCAC
ACCCCCAGATTCTCTTGCGGGAATAGGCGCCGGGGGTGCCTGCCT
Found at i:34672 original size:171 final size:169
Alignment explanation
Indices: 34388--34700 Score: 563
Period size: 171 Copynumber: 1.8 Consensus size: 169
34378 GTCCTTCGGA
* * *
34388 CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGT
1 CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCGTAGGTCGGAGTGGTCCTCACTTCGT
*
34453 TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTT
66 TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTT
34518 CGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTCCT
131 CGGACCCT-TCGGTCGGAGTGGTCCTTCGGACCAACTCCT
*
34558 CCAACTCCTCCAACTCCTCCCACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCG
1 CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCC-GTAGGTCGGAGTGGTCCTCACTTCG
34623 TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGT
65 TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGT
34688 TCGGACCCTTCGG
130 TCGGACCCTTCGG
34701 CCTTTAGGCA
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
170 42 0.31
171 95 0.69
ACGTcount: A:0.15, C:0.37, G:0.23, T:0.25
Consensus pattern (169 bp):
CCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCCCGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCTTCGGTCGGAGTGGTCCTTCGGACCAACTCCT
Left flanking sequence: Indices 33888 -- 34387
AGGGTGAAGACGCGCCGTGCCGGGCCGATTCAGCCGAAGCCGATGCCTAGGGTGGAGACGCTCTC
CTCGGAGTGCCCCTACTCGGAGGGCCAGGGCAGCCCTAGGGCTGGCCGCTCACGTAGGTCTTTAG
ACACTCGACCGAAGGGAGAGGGCCTTAGAAAGGCCTTTTAAAATGCCCTTTCCCTTCCCTTTCCC
TCCCCTAGAAAGGCTTTCAACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTT
CAATTAATTGAAAATTCCTTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTTCTTT
GCTTGCTTCAAATTCAATGAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTGCTTC
AAATTAAATTAATCAAAAAACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATTTAAT
TTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTGGTCCTTCGGA
Right flanking sequence: Indices 34701 -- 35200
CCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGC
CTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCC
TTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCT
TTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCG
GAGTTGCCCTCCTTCGGAGGGCCCTGAACCCGTCGTTCCGACGTCACTCAGAATTCTGTATATAG
ACTCCAGCCTCGAGAAGCGAGTCACACCCCCAGATTCTCTTGCGGGAATAGGCGCCGGGGGTGCC
TGCCTTCATTCGGCCAGGAGGTGGTTCAACTACTTTAGTTGCTCTCTTTAGCTCCAATAGGTTCG
AGTGACGCCGGTTTACGTTGCTTTGACCGAAGCAGATGGGCACTC
Found at i:34702 original size:64 final size:64
Alignment explanation
Indices: 34601--34957 Score: 678
Period size: 64 Copynumber: 5.6 Consensus size: 64
34591 CCTCCCGGTA
34601 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
34665 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
*
34729 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
*
34793 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
*
34857 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
34921 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGG
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCT-TCGG
34958 TCGGAGTTGC
Statistics
Matches: 290, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
64 286 0.99
65 4 0.01
ACGTcount: A:0.15, C:0.28, G:0.32, T:0.25
Consensus pattern (64 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Left flanking sequence: Indices 34101 -- 34600
AACAGAAAGGCCGCGGTTCTTTTCTTTTTCAAAAAGTAGGTAATTTTCAATTAATTGAAAATTCC
TTTAAAGCGCTAAATTGAATTAAATTAAATTCTATTAGAATTTCTTTGCTTGCTTCAAATTCAAT
GAATTTTCAATTAATTTAAGCAGCGCTATTAAATTAGAATTTGCTTCAAATTAAATTAATCAAAA
AACTCAAATTTTTCACCAACTCTTTAAAGCGGTTACTTTAATTTAATTTCATTGAAAATTAAAGG
TTCTTACGGTCGGAGTGGTCCTTCGGACCAACTCCTCCAACTCCTCCAACTCCTCCAACTCCTCC
CTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCAACTC
CTCCAACTCCTCCAACTCCTCCCACTCCTCCAACTCCTCCCGGTA
Right flanking sequence: Indices 34958 -- 35457
TCGGAGTTGCCCTCCTTCGGAGGGCCCTGAACCCGTCGTTCCGACGTCACTCAGAATTCTGTATA
TAGACTCCAGCCTCGAGAAGCGAGTCACACCCCCAGATTCTCTTGCGGGAATAGGCGCCGGGGGT
GCCTGCCTTCATTCGGCCAGGAGGTGGTTCAACTACTTTAGTTGCTCTCTTTAGCTCCAATAGGT
TCGAGTGACGCCGGTTTACGTTGCTTTGACCGAAGCAGATGGGCACTCGAAAGCTGAGAGCCTAC
GACCTCTGCCTGGGTCGGCTAAAGGCTTTGTTGCCCCGGCAACCTACCTTCCCAACGCGCGGCTA
GCGTAGCGCTTCTCCCGATGATCTGCCCGGCTTCGAAAAACGAGTAGGCTTTCTCTAAAAGGATA
AAAACTCGTGGATTATGAATAGAAAATAATATTAAAAGACGTAATAAAACCTCTTTCATTGTTGC
CGTAGCCGCAGGAGGCCTCAGAAGCTACGAGGGAAGACGAAGAGG
Found at i:36708 original size:35 final size:35
Alignment explanation
Indices: 36659--37274 Score: 1180
Period size: 35 Copynumber: 17.6 Consensus size: 35
36649 TAGGGCCCTC
* * **
36659 CGAAG-GAGGGCCACTCCGACCGATAGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36693 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36728 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36763 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36798 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36833 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
*
36868 CGAAGTGAGGACCACCCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36903 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36938 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
36973 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37008 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37043 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37078 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37113 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37148 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37183 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37218 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
1 CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
37253 CGAAGTGAGGACCACTCCGACC
1 CGAAGTGAGGACCACTCCGACC
37275 GAAGGGAGGA
Statistics
Matches: 575, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
34 5 0.01
35 570 0.99
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
Left flanking sequence: Indices 36159 -- 36658
CTGCTGAATGGGCTCTAGCCCGCTGCGAAGCGGAATTGGCCCTTCTGAAGTGGTGCTTCGGCAGG
CGCTACGCGCTACCCGCGGGGGGTGCGGAGCACCCCCCTGCCGATAGCCCTTGTGGGCTTGTGCG
AGTAGCAGAGTATCACGCCTGAGAGGCCGGCTGAGTGAGTCCTTCTCCTTGCCCCCAGCCAAGAA
TCGTATTGGCAGTCATGGTCTGCCGTGCCTGCAGGACCCTCTAGTCTGCCTGATACGTCTTGGAC
TGGTTCGACGGTTGGACGGAGAAGTTTTCTTACATCCCGTATATGCGGACAGGAACGAGTTGTTT
GAAAGTTGAGCCAATAATGTTGTTGGTCAAGATGTGGTGTCCAGCCCACATTGGTACGGGTTTGA
TCGAAGCCATCGAGACTTTTCCTTAGCAAGAAGCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTC
ACTTCGTTCGGACCCGGTAGGTCGGAGTTGCCCTGTAGGGCCCTC
Right flanking sequence: Indices 37275 -- 37774
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGGGGAG
TTGGAGGAGTTGGCTCTTTCTTGCCGGTACTTAATTTTCAATTAAATGCCATTGACTGGGAGCCC
GGCACCCATTCTGCATGGCAGGGAAAAGGAGGAGGCGCGTAGCAATAGAAAGGCATGCAGTAGTC
GTTAAAAACAACTACTGCATGCCCCTCTACCATATACGTCGTTTCTGCCTTGCCTAGGTCTGGCA
CGGGTCGGTGGTGCCTTGCCATTGGGTTGGTGTATGGGTGCCTAGGGCCTATTGGGTATGGGCAC
CCACTCACACGCTCGCTACCTTCGCAAGCAAACACGTATATAGATACAGGTTCTTCACCCTAACC
CGCTGGGGCAAAGCGAAGAACCACTCCCCGGGCCGGTGGTTCTGATGGCCCCTGCCCCCCACCAA
CTCGGTAGGTGGGGGGACCCACGCGCTTGCTCGTTCCTCGTCTAC
Found at i:37352 original size:9 final size:9
Alignment explanation
Indices: 37278--37349 Score: 117
Period size: 9 Copynumber: 8.0 Consensus size: 9
37268 TCCGACCGAA
37278 GGGAGGAGT
1 GGGAGGAGT
37287 GGGAGGAGT
1 GGGAGGAGT
37296 GGGAGGAGT
1 GGGAGGAGT
37305 GGGAGGAGT
1 GGGAGGAGT
37314 GGGAGGAGT
1 GGGAGGAGT
*
37323 GGGGGGAGT
1 GGGAGGAGT
*
37332 GGGGGGAGT
1 GGGAGGAGT
*
37341 TGGAGGAGT
1 GGGAGGAGT
37350 TGGCTCTTTC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.19, C:0.00, G:0.68, T:0.12
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 36778 -- 37277
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGG
ACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACCCCGACCTACCGGGTCCGAACGAAG
TGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGT
CCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTAC
CGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 37350 -- 37849
TGGCTCTTTCTTGCCGGTACTTAATTTTCAATTAAATGCCATTGACTGGGAGCCCGGCACCCATT
CTGCATGGCAGGGAAAAGGAGGAGGCGCGTAGCAATAGAAAGGCATGCAGTAGTCGTTAAAAACA
ACTACTGCATGCCCCTCTACCATATACGTCGTTTCTGCCTTGCCTAGGTCTGGCACGGGTCGGTG
GTGCCTTGCCATTGGGTTGGTGTATGGGTGCCTAGGGCCTATTGGGTATGGGCACCCACTCACAC
GCTCGCTACCTTCGCAAGCAAACACGTATATAGATACAGGTTCTTCACCCTAACCCGCTGGGGCA
AAGCGAAGAACCACTCCCCGGGCCGGTGGTTCTGATGGCCCCTGCCCCCCACCAACTCGGTAGGT
GGGGGGACCCACGCGCTTGCTCGTTCCTCGTCTACCTGGACGGTGGCACTGCCCGCCGGGTGCTC
CCACGAAGGGGGTAGGGCGGGCTATAGAAGCGGCTCGGCTTCTGC
Found at i:38313 original size:9 final size:9
Alignment explanation
Indices: 38299--38334 Score: 63
Period size: 9 Copynumber: 4.0 Consensus size: 9
38289 TCCGACCGAA
38299 GGGAGGAGT
1 GGGAGGAGT
38308 GGGAGGAGT
1 GGGAGGAGT
*
38317 TGGAGGAGT
1 GGGAGGAGT
38326 GGGAGGAGT
1 GGGAGGAGT
38335 TGGTCCGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.22, C:0.00, G:0.64, T:0.14
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 37799 -- 38298
GTGCTCCCACGAAGGGGGTAGGGCGGGCTATAGAAGCGGCTCGGCTTCTGCCGTTACGGGCAAAA
ACTGTCATGAAGACTACCCCTACGACCATACGGCCCCAAAAACCACCTTTTTAAAGTTGTTCTTT
AATTGAATTTCCTTGAAAATTCAATGAACTTTTAAAGCGTCGAGGGGATTTGTATTAAGGAATCG
CTTTTATGAGGCAAAAGAAAACCTCGAGTGGCTCCAAGAGGAACTCACAGGACCAGAACTGTTTT
CGAGCCGGCATACCCGAGTTGCGAGGGTTAGCGGTTTACGATGAAATGAGCGATGTCCTGGACGA
GATTTCGCGGTTGGTACCTGGCTCTCCGGTCAATGACCGCCTCAGGGCCCTCCGAAGGAGGGCAA
CTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
Right flanking sequence: Indices 38335 -- 38834
TGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACC
GAGAGGGAGGAGTTGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGA
AGGGAGGAGTTGGAGGAGTTGGCCCGAAGGGTCCGACCGCTTTAAAAGGGGTCCGAACGAAGTGA
GGACAACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAACAACTGCAAAGTGTAAGGGGTAATT
CTTATTCTATCAGGGTGGCGGGGCCGAAGAAAATCTTTCTAAAGA
Found at i:38323 original size:18 final size:18
Alignment explanation
Indices: 38300--38337 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
38290 CCGACCGAAG
38300 GGAGGAGTGGGAGGAGTT
1 GGAGGAGTGGGAGGAGTT
38318 GGAGGAGTGGGAGGAGTT
1 GGAGGAGTGGGAGGAGTT
38336 GG
1 GG
38338 TCCGAAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.63, T:0.16
Consensus pattern (18 bp):
GGAGGAGTGGGAGGAGTT
Left flanking sequence: Indices 37800 -- 38299
TGCTCCCACGAAGGGGGTAGGGCGGGCTATAGAAGCGGCTCGGCTTCTGCCGTTACGGGCAAAAA
CTGTCATGAAGACTACCCCTACGACCATACGGCCCCAAAAACCACCTTTTTAAAGTTGTTCTTTA
ATTGAATTTCCTTGAAAATTCAATGAACTTTTAAAGCGTCGAGGGGATTTGTATTAAGGAATCGC
TTTTATGAGGCAAAAGAAAACCTCGAGTGGCTCCAAGAGGAACTCACAGGACCAGAACTGTTTTC
GAGCCGGCATACCCGAGTTGCGAGGGTTAGCGGTTTACGATGAAATGAGCGATGTCCTGGACGAG
ATTTCGCGGTTGGTACCTGGCTCTCCGGTCAATGACCGCCTCAGGGCCCTCCGAAGGAGGGCAAC
TCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCT
AAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
Right flanking sequence: Indices 38338 -- 38837
TCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGAG
AGGGAGGAGTTGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCA
CTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCCTCTC
CCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGG
GAGGAGTTGGAGGAGTTGGCCCGAAGGGTCCGACCGCTTTAAAAGGGGTCCGAACGAAGTGAGGA
CAACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAACAACTGCAAAGTGTAAGGGGTAATTCTT
ATTCTATCAGGGTGGCGGGGCCGAAGAAAATCTTTCTAAAGAAGG
Found at i:38373 original size:36 final size:36
Alignment explanation
Indices: 38326--38442 Score: 144
Period size: 36 Copynumber: 3.1 Consensus size: 36
38316 TTGGAGGAGT
38326 GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
1 GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
*
38362 GGGAGGAGTTGGCCCTCCGAAGGAGGGCCACTCCGACCGAGA
1 GGGAGGAGTTGG---TCCGAAGGA---CCACTCCGACCGATA
* * *
38404 GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
1 GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
38440 GGG
1 GGG
38443 TCCGAACGAA
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
36 28 0.40
39 16 0.23
42 26 0.37
ACGTcount: A:0.23, C:0.26, G:0.38, T:0.13
Consensus pattern (36 bp):
GGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATA
Left flanking sequence: Indices 37826 -- 38325
CTATAGAAGCGGCTCGGCTTCTGCCGTTACGGGCAAAAACTGTCATGAAGACTACCCCTACGACC
ATACGGCCCCAAAAACCACCTTTTTAAAGTTGTTCTTTAATTGAATTTCCTTGAAAATTCAATGA
ACTTTTAAAGCGTCGAGGGGATTTGTATTAAGGAATCGCTTTTATGAGGCAAAAGAAAACCTCGA
GTGGCTCCAAGAGGAACTCACAGGACCAGAACTGTTTTCGAGCCGGCATACCCGAGTTGCGAGGG
TTAGCGGTTTACGATGAAATGAGCGATGTCCTGGACGAGATTTCGCGGTTGGTACCTGGCTCTCC
GGTCAATGACCGCCTCAGGGCCCTCCGAAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGT
GAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTG
AGGACAACTCCGACCGAAGGGAGGAGTGGGAGGAGTTGGAGGAGT
Right flanking sequence: Indices 38443 -- 38942
TCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTA
CCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGTCCTCCG
ACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGATAGGGTCCGAACG
AAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCCCGAAGGGTCCGACCGCTTT
AAAAGGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGGGGAGTTGGAACAA
CTGCAAAGTGTAAGGGGTAATTCTTATTCTATCAGGGTGGCGGGGCCGAAGAAAATCTTTCTAAA
GAAGGCTTTCTAAAGAGGCCTTTAAAGTGAGTGAGATACATGATTTAGACTCGGCCGACATGAGG
AGTATTTTCTTCAACGCCATATGGATCCCTTCCCCTTTGGAGGAA
Found at i:38479 original size:35 final size:35
Alignment explanation
Indices: 38422--38547 Score: 216
Period size: 35 Copynumber: 3.6 Consensus size: 35
38412 TTGGTCCTAC
* * **
38422 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
38457 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
38492 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
38527 GGACCACTCCGACCTACCGGG
1 GGACCACTCCGACCTACCGGG
38548 AGGAGTGGGA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 87 1.00
ACGTcount: A:0.26, C:0.33, G:0.29, T:0.11
Consensus pattern (35 bp):
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 37922 -- 38421
GTTCTTTAATTGAATTTCCTTGAAAATTCAATGAACTTTTAAAGCGTCGAGGGGATTTGTATTAA
GGAATCGCTTTTATGAGGCAAAAGAAAACCTCGAGTGGCTCCAAGAGGAACTCACAGGACCAGAA
CTGTTTTCGAGCCGGCATACCCGAGTTGCGAGGGTTAGCGGTTTACGATGAAATGAGCGATGTCC
TGGACGAGATTTCGCGGTTGGTACCTGGCTCTCCGGTCAATGACCGCCTCAGGGCCCTCCGAAGG
AGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTC
GAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTGGGA
GGAGTTGGAGGAGTGGGAGGAGTTGGTCCGAAGGACCACTCCGACCGATAGGGAGGAGTTGGCCC
TCCGAAGGAGGGCCACTCCGACCGAGAGGGAGGAGTTGGTCCTAC
Right flanking sequence: Indices 38548 -- 39047
AGGAGTGGGAGGAGTTGGTCCTCCGACAGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTG
CCTAAAGGCCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAG
TTGGCCCGAAGGGTCCGACCGCTTTAAAAGGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAG
GGAGGAGTGGGGGGAGTTGGAACAACTGCAAAGTGTAAGGGGTAATTCTTATTCTATCAGGGTGG
CGGGGCCGAAGAAAATCTTTCTAAAGAAGGCTTTCTAAAGAGGCCTTTAAAGTGAGTGAGATACA
TGATTTAGACTCGGCCGACATGAGGAGTATTTTCTTCAACGCCATATGGATCCCTTCCCCTTTGG
AGGAACAGGAAACATTATTTGCCTTCCTCATGAGCCACCCCCTGGTGGCTGTTGCTTGTGCCTCG
ATTCTGATTTTCGTCCTATGGATGTTGGTTCGCACTTTATGGCAT
Found at i:42470 original size:35 final size:35
Alignment explanation
Indices: 42428--42528 Score: 202
Period size: 35 Copynumber: 2.9 Consensus size: 35
42418 TCCGACCGAA
42428 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
42463 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
42498 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGTGAGGACCACTCCGACC
42529 GAAGGGAGGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.26, C:0.34, G:0.30, T:0.11
Consensus pattern (35 bp):
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Left flanking sequence: Indices 41928 -- 42427
TTGCAGAAACACTTCGCGAAGAGAGCGGGGGTTAAAAACGTGGATTTTTACACCACGTAGCCCCC
CAACGGAATTTCAATAGCACCCACCCTGATGCTATGTAACTATGCCTCGGCCCTTGAGGTTTGGA
AAGACCAAACTTCTATACCTCTTCCTCTCCGTTACTCTCGGCATGGTCATATATATCGACAGAAT
CAAAAGCAATTAGCCGGATTTCTTTAACGGCCGGCCGAGAAAAACGTCGAAGTTAGCAAGAGGTA
ACCTCTTCTATGGGCCTTTAGGCACTCGACCGATAGGGAGAGGCACAAAATTTCCTATTGGTTGG
GGCGCCCTTACAATAGGCATCATGCATGTGGGCTTTAAACCCCCTACAGTACCCCGCCCCCCACC
TACGCGCCTAGCCCGGTGAGTTCGCTTCGCGCCGGCTGGAACCTCAACGCTCTCATTCAGTGGGG
GCAGGGAACTTCCCCCAACCCAACCCTTCCCTTCCTCCGACCGAA
Right flanking sequence: Indices 42529 -- 43028
GAAGGGAGGAGTGGGGGGAGTTGGAAGCCTTAAATTGAATTGAAACTAAATTAAAGTAACGCTTT
AAAAGGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGC
CGTGGCGGGAGGAGTGGGGGGAGTTGGCCTTGCCGGCCAACGACCGATAGGGAGTTGGGGTTGGC
CTCTCCTAGATGTTTGGGATACGCAGTGTCCCACACGTGCATGGTGTCCATCGTTGATTTTTCTA
CAGGAAGATGGCCTCTGTGTTGATGTTTGATGGTGGCGTACTCGGGCCCGGCTTTGCTCCCCTGC
CTGGCAGAAGGGCACTAAAGAGTTTGCTAGCGGACCAGGCCACAGGGAGTTACTATTTTCTGCTA
GTCACTGGAGGCCTCGGAAATCGGATACACCCCAACCCTACAACAATACACCGGTACAGCTGGTT
CCCTACCCCTACCAGATACTCGTCGGGGTACCGGGGCAGTGTTCA
Found at i:43746 original size:39 final size:39
Alignment explanation
Indices: 43692--43859 Score: 336
Period size: 39 Copynumber: 4.3 Consensus size: 39
43682 AGGAAGCAGG
43692 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43731 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43770 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43809 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
1 CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
43848 CCAACTCCTCCC
1 CCAACTCCTCCC
43860 ACTCCTCCCG
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.15, C:0.38, G:0.21, T:0.25
Consensus pattern (39 bp):
CCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGA
Left flanking sequence: Indices 43192 -- 43691
TGGCTTGGGGCCGAGGTAGGCTGGGGGGAACTCAAAATAAGTTTCTTCTTCTGAATTCAACTAAT
TTTCAATTAATTGAAAATTAGTTGAATTCAGCGCGCGCGAAAAGCTTATTCTTCTTCTTCAGCTT
CCGGCCGGGGAGGGGCTTCTTCTTCTCTGGTTGCAGGAGGCTCTTCTTCTTCATCTCCTAAGTTG
TTTCTGCTGAAGCGGCTGGTAGGTACCGCTCAGGCGGCTTCTTCTTCCGTTTCAGCTGGTACCGC
CTTTGTTTTGCTGTTTCTGGTGATTATGATTATGATTATGATTCTGATCATACTGGCCTGCCGGG
TGAAGACGGGCGGGAACGCGAACGCGAACGCGATTAAGAAAAGAATATTGGGAGCGTTTTCAGCC
TTTAAAGAAAGAGTGACGGCAACATCAATTTCATGCGATGCTCTGCTTGATGTGGAGAGCAGAGA
AGTTTTTGAAATGATTAAGTAGTACTCTGTAGTGTAGGAAGCAGG
Right flanking sequence: Indices 43860 -- 44359
ACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGT
CCTCACTTCGTTCGGACCCTTGGGACATAGTGCCTGAGTGCCCGCACTGCACCGCATTGCGTAGC
AGGAAAAGCCCTTTCGATGATGATGGGTAAGTAGCTGGAGGTGGGAAGCCCTAACCCCGCTTCCG
GTTGCCCAGAGTTCATCGGCGAACTGGACCCAGCGATTAGAGGGGCCAGCTTAGAAAGTTTTAAA
CCCAAAACGCTCCAACCACCCTCCGGAGAAACAAACTACGATGGCCTTCCGGCTTGCGACTGGAG
TAGGCCACACCTTTAACCCTTCTTACTATACTGATACTGAAGTACCAAGTAGGGGAACAGTACTT
CATTGCCGGGCGAAAGCCTAGCCTGTAGTACAACTACTTAATAGT
Found at i:44009 original size:35 final size:35
Alignment explanation
Indices: 43866--44008 Score: 259
Period size: 35 Copynumber: 4.1 Consensus size: 35
43856 TCCCACTCCT
43866 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
43901 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
43936 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
** *
43971 CCCTATCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
44006 CCC
1 CCC
44009 TTGGGACATA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 105 1.00
ACGTcount: A:0.11, C:0.31, G:0.32, T:0.26
Consensus pattern (35 bp):
CCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 43366 -- 43865
TCTTCTTCATCTCCTAAGTTGTTTCTGCTGAAGCGGCTGGTAGGTACCGCTCAGGCGGCTTCTTC
TTCCGTTTCAGCTGGTACCGCCTTTGTTTTGCTGTTTCTGGTGATTATGATTATGATTATGATTC
TGATCATACTGGCCTGCCGGGTGAAGACGGGCGGGAACGCGAACGCGAACGCGATTAAGAAAAGA
ATATTGGGAGCGTTTTCAGCCTTTAAAGAAAGAGTGACGGCAACATCAATTTCATGCGATGCTCT
GCTTGATGTGGAGAGCAGAGAAGTTTTTGAAATGATTAAGTAGTACTCTGTAGTGTAGGAAGCAG
GCCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCCTCCCTCTCGGAATTCGG
AGTGGTCCTTCGGACCAACTCCTCCCTCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCCTCCC
TCTCGGAATTCGGAGTGGTCCTTCGGACCAACTCCTCCCACTCCT
Right flanking sequence: Indices 44009 -- 44508
TTGGGACATAGTGCCTGAGTGCCCGCACTGCACCGCATTGCGTAGCAGGAAAAGCCCTTTCGATG
ATGATGGGTAAGTAGCTGGAGGTGGGAAGCCCTAACCCCGCTTCCGGTTGCCCAGAGTTCATCGG
CGAACTGGACCCAGCGATTAGAGGGGCCAGCTTAGAAAGTTTTAAACCCAAAACGCTCCAACCAC
CCTCCGGAGAAACAAACTACGATGGCCTTCCGGCTTGCGACTGGAGTAGGCCACACCTTTAACCC
TTCTTACTATACTGATACTGAAGTACCAAGTAGGGGAACAGTACTTCATTGCCGGGCGAAAGCCT
AGCCTGTAGTACAACTACTTAATAGTACCAAAGGCGACCCCAGACCACGTAGGAAGCGAAGCTTC
TGGGAAAGTGCTTTCCGCTTATAGGAACTGCCAAAGTGGTTAGTCCACCCGGACATTTGGTGGCG
CGAATAGGCAATAAAAAAGAGGGGATTTCTACGCTTGGGACTGGG
Found at i:44965 original size:37 final size:37
Alignment explanation
Indices: 44919--45194 Score: 328
Period size: 37 Copynumber: 7.8 Consensus size: 37
44909 AATGTTGTTA
*
44919 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
44956 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
* * * *
44993 CTTTCATTTTCAATGAAATTCAA-T---GTTG---TTA
1 CTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAATC
*
45024 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
* * * *
45061 CTTTCATTTTCAATGAAATTCAA-T---GTTG---TTA
1 CTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAATC
*
45092 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
45129 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
*
45166 CTTTCATTTTCAAGGAAATTAAATTAAAG
1 CTTTCATTTTCAATGAAATTAAATTAAAG
45195 TAACCTCACC
Statistics
Matches: 201, Mismatches: 22, Indels: 32
0.79 0.09 0.13
Matches are distributed among these distances:
31 44 0.22
32 2 0.01
33 2 0.01
34 4 0.02
35 2 0.01
36 2 0.01
37 145 0.72
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (37 bp):
CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
Left flanking sequence: Indices 44419 -- 44918
ATAGGAACTGCCAAAGTGGTTAGTCCACCCGGACATTTGGTGGCGCGAATAGGCAATAAAAAAGA
GGGGATTTCTACGCTTGGGACTGGGGGGCCGCCATAAAATGTCCGTCAATCCATTCATTTCTCAA
CTCAAATTGACCAAATGAGCAAGGCTCATCGCCTCGCAGCAAGCCCACTCTAGGCAGGGCGAATA
GATAAGGTTTAATTCTTTCTTGGGGGGCCGAGCTTCGGTAGCCGAAGTGCCTAGAGCTACGTAGC
GCCCGGCACTGGGGGCGGAAGCTACTTTGCGACCCAGGGATTGGAAGCGACTTCCTTCAGTGCAA
TAACGAACGGCATTTCGCTAGTCTCACTGCACTGGACTTACGTGGAACAACCATCCAAGGTTGGC
GTTCTTTGGCAGGGCAGCGCTACGCGCTGCCCGGGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCG
AAAACCGTAAGAACCTTTAATTTTCAATGAAATTCAATGTTGTTA
Right flanking sequence: Indices 45195 -- 45694
TAACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCGACAGACTCTCGCTCGAAA
GACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCCGGGAGAAAGTAGGCTAAG
GACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCCATTATGTTACCTAGCCCT
TGGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGGTAGCCGACAGAAAAACGA
GGTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAATCAGATCTGTATACGTGT
TCTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATTCCTAGAGTCAACAGGCTA
TACGAGACCTTGTTTTGGTTCTCAGAATGCCCGGCACCAGTAGTTAATTAGGGCAGGGCCCCCGC
AGGGGGCTCCTTTAAAGGTGGCCTACGGCCACCCTGCCCCCGCCT
Found at i:44998 original size:68 final size:68
Alignment explanation
Indices: 44926--45194 Score: 243
Period size: 68 Copynumber: 3.9 Consensus size: 68
44916 TTACTTTAAT
* * *
44926 TTTCA-ATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAA
1 TTTCATATGAAATGAAATTAAA-GGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAA
44990 ATCC
65 ATCC
* ** * * ****
44994 TTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
1 TTTCATATGAAATGAAATTAAAGGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
45059 TCC
66 TCC
* ** * * ****
45062 TTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
1 TTTCATATGAAATGAAATTAAAGGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
45127 TCC
66 TCC
* * * *
45130 TTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAAGGAAATTAAATTAAAG
1 TTTCA---T--ATGAAATGAAATTAAA-GGAAAATACTTTAATTTTCAATGAAATTAAATTAAAG
45195 TAACCTCACC
Statistics
Matches: 169, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
68 117 0.69
69 11 0.07
71 1 0.01
73 11 0.07
74 29 0.17
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (68 bp):
TTTCATATGAAATGAAATTAAAGGAAAATACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAA
TCC
Left flanking sequence: Indices 44426 -- 44925
CTGCCAAAGTGGTTAGTCCACCCGGACATTTGGTGGCGCGAATAGGCAATAAAAAAGAGGGGATT
TCTACGCTTGGGACTGGGGGGCCGCCATAAAATGTCCGTCAATCCATTCATTTCTCAACTCAAAT
TGACCAAATGAGCAAGGCTCATCGCCTCGCAGCAAGCCCACTCTAGGCAGGGCGAATAGATAAGG
TTTAATTCTTTCTTGGGGGGCCGAGCTTCGGTAGCCGAAGTGCCTAGAGCTACGTAGCGCCCGGC
ACTGGGGGCGGAAGCTACTTTGCGACCCAGGGATTGGAAGCGACTTCCTTCAGTGCAATAACGAA
CGGCATTTCGCTAGTCTCACTGCACTGGACTTACGTGGAACAACCATCCAAGGTTGGCGTTCTTT
GGCAGGGCAGCGCTACGCGCTGCCCGGGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCGAAAACCG
TAAGAACCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAAT
Right flanking sequence: Indices 45195 -- 45694
TAACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCGACAGACTCTCGCTCGAAA
GACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCCGGGAGAAAGTAGGCTAAG
GACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCCATTATGTTACCTAGCCCT
TGGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGGTAGCCGACAGAAAAACGA
GGTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAATCAGATCTGTATACGTGT
TCTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATTCCTAGAGTCAACAGGCTA
TACGAGACCTTGTTTTGGTTCTCAGAATGCCCGGCACCAGTAGTTAATTAGGGCAGGGCCCCCGC
AGGGGGCTCCTTTAAAGGTGGCCTACGGCCACCCTGCCCCCGCCT
Found at i:45033 original size:31 final size:31
Alignment explanation
Indices: 44993--45111 Score: 114
Period size: 31 Copynumber: 3.6 Consensus size: 31
44983 AGGGAAAATC
*
44993 CTTTCATTTTCAATGAAATTCAATGTTGTTA
1 CTTTAATTTTCAATGAAATTCAATGTTGTTA
* * * *
45024 CTTTAATTTTCAATGAAATTAAAT-TAAAGGGAAAATC
1 CTTTAATTTTCAATGAAATTCAATGT----TG---TTA
*
45061 CTTTCATTTTCAATGAAATTCAATGTTGTTA
1 CTTTAATTTTCAATGAAATTCAATGTTGTTA
45092 CTTTAATTTTCAATGAAATT
1 CTTTAATTTTCAATGAAATT
45112 AAATTAAAGG
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
30 1 0.01
31 42 0.61
34 2 0.03
37 23 0.33
38 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (31 bp):
CTTTAATTTTCAATGAAATTCAATGTTGTTA
Left flanking sequence: Indices 44493 -- 44992
TACGCTTGGGACTGGGGGGCCGCCATAAAATGTCCGTCAATCCATTCATTTCTCAACTCAAATTG
ACCAAATGAGCAAGGCTCATCGCCTCGCAGCAAGCCCACTCTAGGCAGGGCGAATAGATAAGGTT
TAATTCTTTCTTGGGGGGCCGAGCTTCGGTAGCCGAAGTGCCTAGAGCTACGTAGCGCCCGGCAC
TGGGGGCGGAAGCTACTTTGCGACCCAGGGATTGGAAGCGACTTCCTTCAGTGCAATAACGAACG
GCATTTCGCTAGTCTCACTGCACTGGACTTACGTGGAACAACCATCCAAGGTTGGCGTTCTTTGG
CAGGGCAGCGCTACGCGCTGCCCGGGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCGAAAACCGTA
AGAACCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAG
GGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
Right flanking sequence: Indices 45112 -- 45611
AAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTC
AAGGAAATTAAATTAAAGTAACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCG
ACAGACTCTCGCTCGAAAGACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCC
GGGAGAAAGTAGGCTAAGGACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCC
ATTATGTTACCTAGCCCTTGGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGG
TAGCCGACAGAAAAACGAGGTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAA
TCAGATCTGTATACGTGTTCTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATT
CCTAGAGTCAACAGGCTATACGAGACCTTGTTTTGGTTCTCAGAA
Found at i:45069 original size:105 final size:103
Alignment explanation
Indices: 44887--45195 Score: 387
Period size: 105 Copynumber: 3.0 Consensus size: 103
44877 ACCGTAAGAA
44887 CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
1 CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
44952 AATCCTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAAT
66 AATCCTTTCATTTTCAATGAAATTAAATTAAAGTGG---AT
*
44992 CCTTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
1 CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
* * *
45057 AATCCTTTCATTTTCAATGAAATTCAA-T---GTTGTT
66 AATCCTTTCATTTTCAATGAAATTAAATTAAAGTGGAT
* * * * * *
45091 ACTTTAATTTTCAATGAAATTAAAT-TAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTA
1 CCTTTAATTTTCAATGAAATTCAATGT----TG---TTACTTTAATTTTCAATGAAATTAAATTA
*
45155 AAGGGAAAATCCTTTCATTTTCAAGGAAATTAAATTAAAGT
59 AAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGT
45196 AACCTCACCT
Statistics
Matches: 179, Mismatches: 13, Indels: 20
0.84 0.06 0.09
Matches are distributed among these distances:
98 1 0.01
99 23 0.13
101 1 0.01
102 2 0.01
104 1 0.01
105 148 0.83
106 1 0.01
109 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.39
Consensus pattern (103 bp):
CCTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
AATCCTTTCATTTTCAATGAAATTAAATTAAAGTGGAT
Left flanking sequence: Indices 44387 -- 44886
AAGCGAAGCTTCTGGGAAAGTGCTTTCCGCTTATAGGAACTGCCAAAGTGGTTAGTCCACCCGGA
CATTTGGTGGCGCGAATAGGCAATAAAAAAGAGGGGATTTCTACGCTTGGGACTGGGGGGCCGCC
ATAAAATGTCCGTCAATCCATTCATTTCTCAACTCAAATTGACCAAATGAGCAAGGCTCATCGCC
TCGCAGCAAGCCCACTCTAGGCAGGGCGAATAGATAAGGTTTAATTCTTTCTTGGGGGGCCGAGC
TTCGGTAGCCGAAGTGCCTAGAGCTACGTAGCGCCCGGCACTGGGGGCGGAAGCTACTTTGCGAC
CCAGGGATTGGAAGCGACTTCCTTCAGTGCAATAACGAACGGCATTTCGCTAGTCTCACTGCACT
GGACTTACGTGGAACAACCATCCAAGGTTGGCGTTCTTTGGCAGGGCAGCGCTACGCGCTGCCCG
GGCCAGGGGTTTGAGCGCCTTTTAAAGTCGCGAAAACCGTAAGAA
Right flanking sequence: Indices 45196 -- 45695
AACCTCACCTTTTAAAAGGCCCAAAAAGTCGACCGCAGGCGTAGCGACAGACTCTCGCTCGAAAG
ACGAGGCTTATTCAAGGAAAGAACCGGTCCTTTCTCCAGATGAGCCGGGAGAAAGTAGGCTAAGG
ACGGATTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTGCCATTATGTTACCTAGCCCTT
GGACACTGAAACGCGCAAAGAAGCCAGTTGAGGCGGAAGGAGGAGGTAGCCGACAGAAAAACGAG
GTTTTTTCTGGCTAAGTGCTCTATTGATTAGAGCAAAACCACAGAATCAGATCTGTATACGTGTT
CTTGGGATTCATAAACTTTGATCGCAGTCTCTGAAGTGGGCATATTCCTAGAGTCAACAGGCTAT
ACGAGACCTTGTTTTGGTTCTCAGAATGCCCGGCACCAGTAGTTAATTAGGGCAGGGCCCCCGCA
GGGGGCTCCTTTAAAGGTGGCCTACGGCCACCCTGCCCCCGCCTA
Found at i:46942 original size:39 final size:39
Alignment explanation
Indices: 46882--47065 Score: 347
Period size: 39 Copynumber: 4.8 Consensus size: 39
46872 CCGATAGGAC
46882 GGCAACTCCG-A--CCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46918 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46957 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
46996 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
47035 GGCAACTCCGAATTCCGATAGGGAGGAGTTG
1 GGCAACTCCGAATTCCGATAGGGAGGAGTTG
47066 AACAAGTGAA
Statistics
Matches: 145, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
36 10 0.07
37 1 0.01
39 134 0.92
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (39 bp):
GGCAACTCCGAATTCCGATAGGGAGGAGTTGGCCCGAAG
Left flanking sequence: Indices 46382 -- 46881
ATTGCCGGGTCTTCGACCAAGGGACGATGTCCAAGCCTACTATACTTGCCGGGGCTTAATGAAGG
ACTTCGGAACAGCTTAAATTACTTTAATTTCAAAAACCTTTCATTTTCAATGAAATTAAATTAAA
GTAACTTTACGCCGATAGTTCGAGGTTCTTTTCGGCCGGGAAGATCCACTGAAGGGTAGGCTGGG
GTAGGAGCGTAGTACTAGGGTAAGCTAAAGCGCATTTGAGTGCGAGTGCACTTAAAACTCCCTAA
TTACGCTAAAGAACCTTTAATTTTCAATTAAATTAAAGGTTCTTTCGTCCAAGAAAAGTTCGAAT
TGGAAGGAATAGATCTTTTCACTCATAGTATTATCTCCCCCTAATACTCTGGAAAGTATGTCCTT
CGCTACTCGGTATAGATTATTCGGAAAGAAATTACGAATTTTTCGACCATAGCTACGTGTCGGAT
GTTGACTTCTTAGAAACTTCACTCTCAAGGGCCGTCCGATAGGAC
Right flanking sequence: Indices 47066 -- 47565
AACAAGTGAACGTTTCTCTATCTACGTGTTTCCCGAAGTGCACCTCACTTCAGTGCACTCCTTTA
AAGAGCCAGAGGAAAGTTCTCTATTGTCTGGCTTCCGCCTTGTGCCTCCACACTAGTGCCCCCGT
AGGGGGACCACTATGGTTCTAGGCCACCACAACAGCGGGAGTGATAAACAGGATATGAATCCCCC
AGTCCTCTTTCCGTCCTGCCCATCCGACTCCCCCTCCCATCTTTGACTCGATTAGCCGATTCCCG
AAGACTGATCCTATCTATTGCCAGGTGGAAGAAAGGCTAGGCTCCCGAGCTGCCTCCAGGGAAGC
GTACGCGGTTTTGGGTTTCTGTGCAAGAGAGTGATGTCTTTAAAGCATGCTTGCATGCAACTTCT
TCGCGTGCCTTCTCGCGAAAAACCAAGATTGTGTAGGTAAGTTTACTTTAATTTTAAATTAAATT
AAATTAAAGAATCCCCACATGACTTTAAAAGGTACTTAATAGGAA
Found at i:48500 original size:51 final size:51
Alignment explanation
Indices: 48387--48484 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
48377 GTCTATCGGA
* * *
48387 GAATGAGCTGAAGGAGCCCTGCCGGGGAATGAGCTGGATTGAGCCTGTCAGG
1 GAATGAGCTG-AGGAGCCCTACCGGAGAATGAGCTGGAGTGAGCCTGTCAGG
* *
48439 GAATGAGCTGAGGGGCCCTACCGGAGAATGGGCTGG-GTGAGACCTG
1 GAATGAGCTGAGGAGCCCTACCGGAGAATGAGCTGGAGTGAG-CCTG
48485 CCGGGAAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
50 4 0.10
51 26 0.65
52 10 0.25
ACGTcount: A:0.22, C:0.19, G:0.42, T:0.16
Consensus pattern (51 bp):
GAATGAGCTGAGGAGCCCTACCGGAGAATGAGCTGGAGTGAGCCTGTCAGG
Left flanking sequence: Indices 47887 -- 48386
AACAAGCAATCAGGTATATAGATAGTTGGCCTGGGGTCACCACCGCTACCACCCGTCAAGTAATT
GGTGGGTTGAGGCGGCACAGAGAAAAGGTTTTAACGCCCGGAAATCAAGGAATCTTCCGCTATAG
CCTTTTAAAGGGCTCACAAGAGTGTTAAGAACCTTTAATTTTCAATTCATTGAAAATTAAAAAAG
GGGGATTGCTTTAATTTAATTTCATTGAAAATTAAAGGTTACTTAGCTATTGCCCATAATTAAGA
TCATCGGACGGGGCCTGGGGCACCACCGTTACCACCCGTCGAGTAATCAATGGGTTGGGGCGCGT
AGTATAGATGAAAGGGTGCCCTAATACACCAGTAGAGCCAGTCTCTCTACCTCCCCTGATCAGTC
GGGGAAGGAATCCCAGGCTTTTAAAGGGCTTCCGCCTTGATTGGATCCTTCAATCGATTATGCCG
GAGCTGATCTCTTCTTCGGGAATGGGCTGAGTCGGGTCTATCGGA
Right flanking sequence: Indices 48485 -- 48984
CCGGGAAATGGGCTGAATGGGGCCTGTCGTAGAATGAGCTGAGTGAGGGCCCGTCGGGGAATGGG
CTGCCGTGAAGCCTGTCGGAGAATGAGCTGAATTGGGTAAATAGGAGTAGGCCCTAACCTAGGCC
CTAACCAAATGTGGATCTAAAACCAGAAAACGGAACTGAGTTCACGGATGAACAGAAGGAACATA
CGTCAATACATCTTGCTGACCCTATCTCACGCAGAGAAGAGAGTGGCCAGTTCGGCATTCGCTGA
GGTGATAGTGGTACAAGTAAGCTCAGGCTTCGACTGTAGGAGCATAGTGGTGAGCAAGGAAGCTC
ACAGTGGGAGGGGCATTACCACTACGGCATCTGGAACAGAGATGCAAGCAAATACACGGTGACTA
AGAAGCTGCGAGCACTCTTCCCTGAGTTCGAGGGGCGCCAATGTAACGTGAGCTTCCACAAGGGG
TGGAATACGAGCTTTTGCAGGTATCTAATGAAAGGTGATGAATCC
Found at i:48540 original size:27 final size:27
Alignment explanation
Indices: 48357--48580 Score: 105
Period size: 26 Copynumber: 8.6 Consensus size: 27
48347 GATCTCTTCT
* * * *
48357 TCGG-GAATGGGCTGAGT-CGGGTCTA
1 TCGGAGAATGAGCTGAGTGAGGGCCTG
*
48382 TCGGAGAATGAGCTGAAG-GA-GCCCTG
1 TCGGAGAATGAGCTG-AGTGAGGGCCTG
* * *
48408 CCGGGGAATGAGCTGGATTGA--GCCTG
1 TCGGAGAATGAGCT-GAGTGAGGGCCTG
* *
48434 TCAGG-GAATGAGCTGAG-G-GGCCCTA
1 TC-GGAGAATGAGCTGAGTGAGGGCCTG
* * * *
48459 CCGGAGAATGGGCTGGGTGA-GACCTG
1 TCGGAGAATGAGCTGAGTGAGGGCCTG
* * *
48485 CCGG-GAAATGGGCTGAATG-GGGCCTG
1 TCGGAG-AATGAGCTGAGTGAGGGCCTG
* *
48511 TCGTAGAATGAGCTGAGTGAGGGCCCG
1 TCGGAGAATGAGCTGAGTGAGGGCCTG
* * * *
48538 TCGGGGAATGGGCTGCCGTGA-AGCCTG
1 TCGGAGAATGAGCTG-AGTGAGGGCCTG
48565 TCGGAGAATGAGCTGA
1 TCGGAGAATGAGCTGA
48581 ATTGGGTAAA
Statistics
Matches: 148, Mismatches: 35, Indels: 31
0.69 0.16 0.14
Matches are distributed among these distances:
24 3 0.02
25 21 0.14
26 77 0.52
27 43 0.29
28 4 0.03
ACGTcount: A:0.21, C:0.19, G:0.42, T:0.18
Consensus pattern (27 bp):
TCGGAGAATGAGCTGAGTGAGGGCCTG
Left flanking sequence: Indices 47857 -- 48356
GCTGCTGGGATGGGCAGAGCTAGGCGCCACAACAAGCAATCAGGTATATAGATAGTTGGCCTGGG
GTCACCACCGCTACCACCCGTCAAGTAATTGGTGGGTTGAGGCGGCACAGAGAAAAGGTTTTAAC
GCCCGGAAATCAAGGAATCTTCCGCTATAGCCTTTTAAAGGGCTCACAAGAGTGTTAAGAACCTT
TAATTTTCAATTCATTGAAAATTAAAAAAGGGGGATTGCTTTAATTTAATTTCATTGAAAATTAA
AGGTTACTTAGCTATTGCCCATAATTAAGATCATCGGACGGGGCCTGGGGCACCACCGTTACCAC
CCGTCGAGTAATCAATGGGTTGGGGCGCGTAGTATAGATGAAAGGGTGCCCTAATACACCAGTAG
AGCCAGTCTCTCTACCTCCCCTGATCAGTCGGGGAAGGAATCCCAGGCTTTTAAAGGGCTTCCGC
CTTGATTGGATCCTTCAATCGATTATGCCGGAGCTGATCTCTTCT
Right flanking sequence: Indices 48581 -- 49080
ATTGGGTAAATAGGAGTAGGCCCTAACCTAGGCCCTAACCAAATGTGGATCTAAAACCAGAAAAC
GGAACTGAGTTCACGGATGAACAGAAGGAACATACGTCAATACATCTTGCTGACCCTATCTCACG
CAGAGAAGAGAGTGGCCAGTTCGGCATTCGCTGAGGTGATAGTGGTACAAGTAAGCTCAGGCTTC
GACTGTAGGAGCATAGTGGTGAGCAAGGAAGCTCACAGTGGGAGGGGCATTACCACTACGGCATC
TGGAACAGAGATGCAAGCAAATACACGGTGACTAAGAAGCTGCGAGCACTCTTCCCTGAGTTCGA
GGGGCGCCAATGTAACGTGAGCTTCCACAAGGGGTGGAATACGAGCTTTTGCAGGTATCTAATGA
AAGGTGATGAATCCCCCTTGGTATGGGGGGAAGAACCCTTGGAAGTGGTACGGGAGCGAGCCAAG
AGTGCAGTGACGAAAAAGAGAATGAATGACTCTTGGAACTTAGTG
Found at i:50187 original size:9 final size:9
Alignment explanation
Indices: 50173--50202 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
50163 ATATGAGCTG
50173 TCCAACTCC
1 TCCAACTCC
50182 TCCAACTCC
1 TCCAACTCC
50191 TCCAACTCC
1 TCCAACTCC
50200 TCC
1 TCC
50203 CTTCGGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23
Consensus pattern (9 bp):
TCCAACTCC
Left flanking sequence: Indices 49673 -- 50172
GAGGCCTTTAGGAGTCGAGTGTTCTGTCTGAACTTCAATAGCCAACTGAATCATCCCATAACAGC
GGATCGATTGGGTGCAACGCTTCTGGTTGAATGCATTAAACAGCCTTTAAAGGCTGCTCCGGCCA
AACAGCATACCAACACTGAAGCTCCTAGCTGACTTGGAGGCATGCGAGGGGTTAAGTGAAGTGAG
TGAGCGCCTTTTAAAGGCTTTAACTTGTGTCGATCGAGGGAGGCGCTTCAGGTAGCGGCAGCATT
GAGCGATACGGAATTGGAGCAGTGGAAATCCCCAACTTACAAGCTGTTCATGACACCGCAAAACC
CACCGAGGGAGTACCCGACAGGCAGCAAGAAGAACTCAGAGAATTCGCTTGGCTGAATTAAATTG
ATTGCAGACGGGATTATTCAAAGACTTATAGGACGGTGAATGAGCTGTTTCAAGAGACTTACAAA
AGCTCGGAAAATCCCCTAATGCATTTCCCGTCGGAATATGAGCTG
Right flanking sequence: Indices 50203 -- 50702
CTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGA
GAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGAGGG
CAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTCGTACAGAAAATGA
TTCGCAACGAGTGGTCTGTTCGACAAAGCGAAGTGTCCCTCGCCTAGCCCCGCCTACTAACCTTG
GTAGGCGGGGCGGCGTTGCTGTTTGGGATGAGATGTGAGGTGGCCGACTAGGGGAAGTAGAAGGC
TAGTGGAAAGGTAGAGTTCGAAGCAACCTTTCTCTCTTTAGCCTTCCGCCCGGGAAGAAACTCAA
TCGGAGTTAGAGCCCTTTAAAGTGCGCAAACTTCCTTTCTCTCCCACCTCTCCCAGGCCTGCTAC
ACGACAATCCCTGTAAAGTCTAGGTCTAGGGTCCTCCGACAGGAG
Found at i:50746 original size:35 final size:35
Alignment explanation
Indices: 50700--51239 Score: 1019
Period size: 35 Copynumber: 15.5 Consensus size: 35
50690 CCTCCGACAG
* * **
50700 GAGGACAACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
* *
50735 GAGGACCACTCCGACCGA-AGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50769 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50804 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50839 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50874 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50909 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50944 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
50979 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51014 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51049 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51084 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51119 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51154 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51189 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
51224 GAGGACCACTCCGACC
1 GAGGACCACTCCGACC
51240 CTCTCCCTAT
Statistics
Matches: 501, Mismatches: 3, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
34 33 0.07
35 468 0.93
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 50200 -- 50699
TCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAG
GGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTGGCCCTCCTATCGGA
GGGCAGGGGGCCTGGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTCGTACAGAAAA
TGATTCGCAACGAGTGGTCTGTTCGACAAAGCGAAGTGTCCCTCGCCTAGCCCCGCCTACTAACC
TTGGTAGGCGGGGCGGCGTTGCTGTTTGGGATGAGATGTGAGGTGGCCGACTAGGGGAAGTAGAA
GGCTAGTGGAAAGGTAGAGTTCGAAGCAACCTTTCTCTCTTTAGCCTTCCGCCCGGGAAGAAACT
CAATCGGAGTTAGAGCCCTTTAAAGTGCGCAAACTTCCTTTCTCTCCCACCTCTCCCAGGCCTGC
TACACGACAATCCCTGTAAAGTCTAGGTCTAGGGTCCTCCGACAG
Right flanking sequence: Indices 51240 -- 51739
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCC
TCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACC
GGGAGGAGTGGGGGGAGTTGGTTTGCCTCGCCTCCTTCTGTAGCTTCCGCTTCCGTGGAGTAAAA
GAGAAAAGGGCCTTTCGCCCTCCCTTTGCCTCGCCCCCTTCTGTAGCTTTCGTTCTTTCAAAGGC
CTTCTTTTGCTTCCGCTTGCGTAGAAGGAGGGTTTGCTGGGTGGCCCGGCAGGCCACCCGGCGGG
CAGCCCGGCAGGCTGGCCTGGCTCCTCCTCCTAAGGCTGGAGCGT
Found at i:51310 original size:64 final size:64
Alignment explanation
Indices: 51209--51495 Score: 565
Period size: 64 Copynumber: 4.5 Consensus size: 64
51199 CCGACCTACC
*
51209 GGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
51273 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
51337 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
51401 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
1 GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
51465 GGGTCCGAACGAAGTGAGGACAACTCCGACC
1 GGGTCCGAACGAAGTGAGGACAACTCCGACC
51496 TACCGGGAGG
Statistics
Matches: 222, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 222 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.15
Consensus pattern (64 bp):
GGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAA
Left flanking sequence: Indices 50709 -- 51208
TCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAAC
GAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTC
CGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGAC
CTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 51496 -- 51995
TACCGGGAGGAGTGGGGGGAGTTGGTTTGCCTCGCCTCCTTCTGTAGCTTCCGCTTCCGTGGAGT
AAAAGAGAAAAGGGCCTTTCGCCCTCCCTTTGCCTCGCCCCCTTCTGTAGCTTTCGTTCTTTCAA
AGGCCTTCTTTTGCTTCCGCTTGCGTAGAAGGAGGGTTTGCTGGGTGGCCCGGCAGGCCACCCGG
CGGGCAGCCCGGCAGGCTGGCCTGGCTCCTCCTCCTAAGGCTGGAGCGTCCGAGCCTGGAGGAGT
TTGGATGAAATTCAAATCTAAGGCGCTACGCGCTACCCGCGGGGGGTGCGGAGCACCCCCCTGCC
CTGTTGTCTAAGCAAAAATCGATGGTTTGCAAGGTGTCCCGCCAGTGCCAGTGTCACCAACGCGC
TCAGAACGCGCATTTTTCTAATAAAATGACCTCGCGTAACGCCTTACTTTAATGTTAAATTAAAT
TAAATTAAAGTAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTA
Found at i:52173 original size:9 final size:9
Alignment explanation
Indices: 52159--52196 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
52149 GTTTTTTCTG
52159 CCAACTCCT
1 CCAACTCCT
52168 CCAACTCCT
1 CCAACTCCT
*
52177 CCCACTCCT
1 CCAACTCCT
52186 CCAACTCCT
1 CCAACTCCT
52195 CC
1 CC
52197 CTTCGGCCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.18, C:0.61, G:0.00, T:0.21
Consensus pattern (9 bp):
CCAACTCCT
Left flanking sequence: Indices 51659 -- 52158
GGGTTTGCTGGGTGGCCCGGCAGGCCACCCGGCGGGCAGCCCGGCAGGCTGGCCTGGCTCCTCCT
CCTAAGGCTGGAGCGTCCGAGCCTGGAGGAGTTTGGATGAAATTCAAATCTAAGGCGCTACGCGC
TACCCGCGGGGGGTGCGGAGCACCCCCCTGCCCTGTTGTCTAAGCAAAAATCGATGGTTTGCAAG
GTGTCCCGCCAGTGCCAGTGTCACCAACGCGCTCAGAACGCGCATTTTTCTAATAAAATGACCTC
GCGTAACGCCTTACTTTAATGTTAAATTAAATTAAATTAAAGTAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGTGGCGGGAGGGCTTTAATTTTCAATGAAATGAAATTAAAGGTTCTT
TACGGGATAACTCCGATAGAAGGCACTGTAGTGGCTAGGAGGTTGGGCCCCCGAAGTAGGGGGTG
GGGCGGGTAAAGTACGTGACTTTAAAGCCTAACCTGTTTTTTCTG
Right flanking sequence: Indices 52197 -- 52696
CTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCC
TATCGGTCGGAGTTGTCCTCCTGTCGGAGGACCCAGGAACAAGCCAAAAACAACCTTTAAAGTTT
TTTCTTAGGCCGGCGCCTTTAAACCCCTCTAGTGGTCCCGTAGGACCTGCTGCCGGCCACCACCA
CCCACTTTATGATGCTGCCCCCCACCCGTGGTGCCGGTCACCTTCGCTCTAGTGCTGGGAAAAAG
GCCCAAACAAGGCCAGTGAACGATCGGTGAAGGGCAGGGGGGCGCTACGCGCCCCCCGCGGGGGC
CGGCCAGGCCCCCTGCCCTCCGATAGGAGGGCCACTCCGACCGATAGGGAGGAGTGGGGGGAGTT
GGCTTCATTCTAATGAATTTCAAGGCTCTCGCTATTGAGATAAGGAGATCCATGGTCACGAAGCC
CTAATAAGGCGTTCCCAACCTATCTCGTTTTCGTCCCATCCGAAT
Found at i:53203 original size:31 final size:32
Alignment explanation
Indices: 53159--53229 Score: 126
Period size: 31 Copynumber: 2.2 Consensus size: 32
53149 CAATGAAATT
53159 AAATTAAAGTGTTGTTACTTTAATTTTCAATG
1 AAATTAAAGTGTTGTTACTTTAATTTTCAATG
*
53191 AAATTCAA-TGTTGTTACTTTAATTTTCAATG
1 AAATTAAAGTGTTGTTACTTTAATTTTCAATG
53222 AAATTAAA
1 AAATTAAA
53230 TTAAAGGGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
31 30 0.81
32 7 0.19
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (32 bp):
AAATTAAAGTGTTGTTACTTTAATTTTCAATG
Left flanking sequence: Indices 52659 -- 53158
GGCGTTCCCAACCTATCTCGTTTTCGTCCCATCCGAATGAATCCATCCGGCTGCTTCGGCAGCGA
CGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTTGGTCAGAAGAGAACAAC
AGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGCTGATGCAGCCGGGACTG
ATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAGTACCCGCTCCTTATGAT
CTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCAACTCCGTCATGTATTTT
AAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAATTTAATTTCATTGAAAAT
TAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGTTACTTTAATCTAATTTC
ATTGAAAATTAAAGGTTTAAAAAACCTTGAATTTTCAATGAAATT
Right flanking sequence: Indices 53230 -- 53729
TTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAAT
GAAATTCAATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTC
AATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGTAACAGTAAC
TTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTAAAGTAAATTATCTCACGGC
CGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCC
TAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAGTTGGGTTGATGAAGGGATT
AGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCG
Found at i:53253 original size:37 final size:37
Alignment explanation
Indices: 53207--53414 Score: 304
Period size: 37 Copynumber: 5.8 Consensus size: 37
53197 AATGTTGTTA
*
53207 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
53244 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
* * * *
53281 CTTTCATTTTCAATGAAATTCAA-T---GTTG---TTA
1 CTTTCATTTTCAATGAAATTAAATTAAAG-GGAAAATC
*
53312 CTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
53349 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
1 CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
53386 CTTTCATTTTCAATGAAATTAAATTAAAG
1 CTTTCATTTTCAATGAAATTAAATTAAAG
53415 TAACAGTAAC
Statistics
Matches: 152, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
31 22 0.14
32 1 0.01
33 1 0.01
34 2 0.01
35 1 0.01
36 1 0.01
37 124 0.82
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (37 bp):
CTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATC
Left flanking sequence: Indices 52707 -- 53206
GGCTGCTTCGGCAGCGACGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTT
GGTCAGAAGAGAACAACAGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGC
TGATGCAGCCGGGACTGATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAG
TACCCGCTCCTTATGATCTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCA
ACTCCGTCATGTATTTTAAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAAT
TTAATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGT
TACTTTAATCTAATTTCATTGAAAATTAAAGGTTTAAAAAACCTTGAATTTTCAATGAAATTAAA
TTAAAGTGTTGTTACTTTAATTTTCAATGAAATTCAATGTTGTTA
Right flanking sequence: Indices 53415 -- 53914
TAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTAAAGTAAATT
ATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCTCTCCCTATC
GGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAGTTGGGTTGA
TGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGCGCAGACGAT
CCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTGGTCCTAGGG
CAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGATTCTGAGAG
GAGAGAAGACGATCCTGGAGATTATCTTCCCGATCCTGGGTATGA
Found at i:53269 original size:105 final size:105
Alignment explanation
Indices: 53144--53405 Score: 443
Period size: 105 Copynumber: 2.5 Consensus size: 105
53134 AAAACCTTGA
* ****
53144 ATTTTCAATGAAATTAAATTAAAGTGTTGTTACTTTAATTTTCAATGAAATTCAATGTTGTTACT
1 ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATTCAATGTTGTTACT
53209 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
66 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
* *
53249 ATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTCAATGTTGTTACT
1 ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATTCAATGTTGTTACT
53314 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
66 TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
* *
53354 ATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATT
1 ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATT
53406 AAATTAAAGT
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 150 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (105 bp):
ATTTTCAATGAAATTAAATTAAAGGGAAAATACTTTAATTTTCAATGAAATTCAATGTTGTTACT
TTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTC
Left flanking sequence: Indices 52644 -- 53143
ACGAAGCCCTAATAAGGCGTTCCCAACCTATCTCGTTTTCGTCCCATCCGAATGAATCCATCCGG
CTGCTTCGGCAGCGACGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTTGG
TCAGAAGAGAACAACAGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGCTG
ATGCAGCCGGGACTGATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAGTA
CCCGCTCCTTATGATCTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCAAC
TCCGTCATGTATTTTAAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAATTT
AATTTCATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGTTA
CTTTAATCTAATTTCATTGAAAATTAAAGGTTTAAAAAACCTTGA
Right flanking sequence: Indices 53406 -- 53905
AAATTAAAGTAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTA
AAGTAAATTATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCT
CTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTC
TCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAG
TTGGGTTGATGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGC
GCAGACGATCCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTG
GTCCTAGGGCAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGA
TTCTGAGAGGAGAGAAGACGATCCTGGAGATTATCTTCCCGATCC
Found at i:53286 original size:68 final size:71
Alignment explanation
Indices: 53214--53414 Score: 245
Period size: 68 Copynumber: 2.8 Consensus size: 71
53204 TTACTTTAAT
53214 TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAA
1 TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAA
53279 TCCTTTCA
66 TCC--TCA
* * * * *
53287 TTTTCAATGAAATTCAA-T---GTTG---TTACTTTAATTTTCAATGAAATTAAATTAAAGGGAA
1 -TTTCAATGAAATTAAATTAAAG-GGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAA
53345 AATCCTTTCA
64 AATCC--TCA
53355 TTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAG
1 -TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAG
53415 TAACAGTAAC
Statistics
Matches: 109, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
68 59 0.54
69 1 0.01
70 1 0.01
71 2 0.02
72 1 0.01
73 1 0.01
74 44 0.40
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.37
Consensus pattern (71 bp):
TTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAA
TCCTCA
Left flanking sequence: Indices 52714 -- 53213
TCGGCAGCGACGTTCATTTCCCGCCCGGGGCTTATCGATCGTGGAAGCTGAGAAGCTTGGTCAGA
AGAGAACAACAGGTGGGAACGGGAAATGAATCATTGGAGGAGAAAACCCCATTGATGCTGATGCA
GCCGGGACTGATATTGAACGCCGAAGACACGAACGTTTCAATTAATTTTAAATTAAAGTACCCGC
TCCTTATGATCTGATCGATAGGAGGCTTGAGGGAGGTGGGCTTTTTAAAGGCCGGCCAACTCCGT
CATGTATTTTAAAATGAATTGAATTGAATTTAGCCAACTCCTCCTGGGTTACTTTAATTTAATTT
CATTGAAAATTAAAGGTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTAAGTTACTTTA
ATCTAATTTCATTGAAAATTAAAGGTTTAAAAAACCTTGAATTTTCAATGAAATTAAATTAAAGT
GTTGTTACTTTAATTTTCAATGAAATTCAATGTTGTTACTTTAAT
Right flanking sequence: Indices 53415 -- 53914
TAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAATTTCATTGAAAATTAAAGTAAATT
ATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGGACAACTCCGACCCTCTCCCTATC
GGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTGGGAGGAGTTGGGGGAGTTGGGTTGA
TGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGCGCAGACGAT
CCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTGGTCCTAGGG
CAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGATTCTGAGAG
GAGAGAAGACGATCCTGGAGATTATCTTCCCGATCCTGGGTATGA
Found at i:53646 original size:9 final size:9
Alignment explanation
Indices: 53632--53669 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
53622 AAGGCCGAAG
53632 GGAGGAGTT
1 GGAGGAGTT
*
53641 GGAGGAGTG
1 GGAGGAGTT
53650 GGAGGAGTT
1 GGAGGAGTT
*
53659 GGGGGAGTT
1 GGAGGAGTT
53668 GG
1 GG
53670 GTTGATGAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.63, T:0.18
Consensus pattern (9 bp):
GGAGGAGTT
Left flanking sequence: Indices 53132 -- 53631
AAAAAACCTTGAATTTTCAATGAAATTAAATTAAAGTGTTGTTACTTTAATTTTCAATGAAATTC
AATGTTGTTACTTTAATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAA
TTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTCAATGTTGTTACTTTAATTTTCAATG
AAATTAAATTAAAGGGAAAATCCTTTCATTTTCAATGAAATTAAATTAAAGGGAAAATCCTTTCA
TTTTCAATGAAATTAAATTAAAGTAACAGTAACTTCCTTCTAAAATTGTTAATTGTTAATTTAAT
TTCATTGAAAATTAAAGTAAATTATCTCACGGCCGGCCCCCGATAGGGAGGAGTTGGTCCGGAGG
ACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGA
CAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAG
Right flanking sequence: Indices 53670 -- 54169
GTTGATGAAGGGATTAGGCCGTTTAGTCCTACAGTCTTTATTCCCTGTCTTTATTTCCCGCGCAG
ACGATCCGAATGACCCAGTGCAAGGGAGAGGGAAGGGAAAGTGGGCAAGCAGACGATCTTGGTCC
TAGGGCAGACGATCAAAGGCCCAGAGCAGACGAGGGAAGACGCGACGATCAGACGTCGAGATTCT
GAGAGGAGAGAAGACGATCCTGGAGATTATCTTCCCGATCCTGGGTATGAATAAGACGATTATTT
TCCACGTGCAGGTATGAATCAGACGATTAGACCGTGCAGACGATTATGGAGACGATCAGACGAGG
AGGAGCTTTTGATCGTCTGCTAAAGCACCAGAATCGTCTGCGAACAAATAACCTTTAATTTAATT
TCAATTAAATTAAAGGTTATTTGCCTCTAGCTGGGCTGCTTTGCCTAAGGAAAAGGCCTTTTCAA
GGTAAAGACTGGCTCGCAAAGGGAGAGGAAGTGAGAAAGCGAAGC
Found at i:57055 original size:33 final size:33
Alignment explanation
Indices: 57013--57076 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
57003 CCTCCCGGTA
* *
57013 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTTGTCCTCACTTCGGTCAGACCCGC
* *
57046 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTTGTCCTCACTTCGGTCAGACCC
57077 TTCGGGCAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.09, C:0.33, G:0.30, T:0.28
Consensus pattern (33 bp):
GGTCGGAGTTGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 56513 -- 57012
GGGCCGGAGGCCCCCCCCCTCCAATTCTATAGAAGCCCAAGATGGCGGGCGTTCTTAACCCCTAT
ATCTACGTAAGAATTCACGTAAATAGAAAACGCGAAAGGAAAATCACTACTGTCAGTTGAATCGG
GCTCGGACTAGACGCTAGGGTAGGATGAAGGGCCTGCCCACGCTAGCGGCGGAGGGAGGCCGAGG
CTGGCCAACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATCGGACCAACTCCTCCAACTCCTCCC
TTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTCCTATCGGA
GGACCCTTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGG
TGGTGGTGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACT
CCTCCCTCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTA
Right flanking sequence: Indices 57077 -- 57576
TTCGGGCAGGGGGCGCTACGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCC
AACTCCCCCCACTCCTCCCTTTGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAG
GCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGG
AGTTGTCCTCCTATCGGAGGACCAACTCCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCC
TCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGT
TCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
Found at i:57310 original size:9 final size:9
Alignment explanation
Indices: 57296--57340 Score: 72
Period size: 9 Copynumber: 5.0 Consensus size: 9
57286 CGGAGGACCA
57296 ACTCCTCCC
1 ACTCCTCCC
*
57305 ACTCCTCCA
1 ACTCCTCCC
*
57314 ACTCCCCCC
1 ACTCCTCCC
57323 ACTCCTCCC
1 ACTCCTCCC
57332 ACTCCTCCC
1 ACTCCTCCC
57341 TTCGGTCGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.13, C:0.67, G:0.00, T:0.20
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 56796 -- 57295
CGTTCGGACCCTATCGGTCGGAGTTGTCCTCCTCCTATCGGAGGACCCTTTGGGCCAGCCCGGGG
GGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGGTGGTGGTGGGGCAGGGGGGGGCG
CCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCCTCCGGTCGGAGTTGCCA
ACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCGCGGTCGGAGTT
GTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGCGCCCCCGGCGGGCAGCGCGTAGC
GCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTTTGGTCGGAGTTGTCCTCACTTCG
TTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACTTCGT
TCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGACCA
Right flanking sequence: Indices 57341 -- 57840
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCAC
TTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCC
TCACTTCGTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACCCTGGCCGTAGCGGGCCTACGGC
CGGCCACTATGCCCCTACTACCCATAGTGGTCCCGTAGGACCGACCCCTCTGGGGGACCCGGGCG
CGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGCGCTTTCCCGGGACCCCCTACCCCATAAGT
GGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCACCATCTCTA
Found at i:57390 original size:35 final size:35
Alignment explanation
Indices: 57344--57636 Score: 509
Period size: 35 Copynumber: 8.4 Consensus size: 35
57334 TCCTCCCTTC
57344 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57379 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57414 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
* *
57449 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57483 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57518 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
* *
57553 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
** *
57587 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57622 GGTCGGAGTGGTCCT
1 GGTCGGAGTGGTCCT
57637 TCGGACCCTG
Statistics
Matches: 249, Mismatches: 7, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
34 64 0.26
35 185 0.74
ACGTcount: A:0.11, C:0.29, G:0.33, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 56844 -- 57343
TTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGGTGGTGG
TGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCC
TCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCG
GACCCGCGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGCGCCCCC
GGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTTTGGTCG
GAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGG
AGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGACCAACT
CCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 57637 -- 58136
TCGGACCCTGGCCGTAGCGGGCCTACGGCCGGCCACTATGCCCCTACTACCCATAGTGGTCCCGT
AGGACCGACCCCTCTGGGGGACCCGGGCGCGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGC
GCTTTCCCGGGACCCCCTACCCCATAAGTGGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCA
CCATCTCTAAAGTGGGTGGGGCTAGCGCGTTTTCCTTAGGGGAATTCTGTGGCGCACGCGCCCCC
TAGGGAAGCGCGTAGCGCATAAAATTTTGCATGGATTCATGACTTCACATAATTTAATTTCATTG
AAAATTAAAGCAAAGAGGCCGGGCTTTCGAACAGAATAATGAAGATCCAGTTTGGGCAGGGGGGT
GCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCCTGCCGTAATAGACAAAAAAAACGAAAGA
TTCCTTAATACACGCCTCAACCGGATCGATTCACGTATTTGACGC
Found at i:57525 original size:104 final size:104
Alignment explanation
Indices: 57344--57636 Score: 532
Period size: 104 Copynumber: 2.8 Consensus size: 104
57334 TCCTCCCTTC
* *
57344 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACC
57409 CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
65 CGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57449 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
57514 GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
66 GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
57553 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
** *
57618 TATCGGTCGGAGTGGTCCT
66 GGTAGGTCGGAGTGGTCCT
57637 TCGGACCCTG
Statistics
Matches: 183, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
104 152 0.83
105 31 0.17
ACGTcount: A:0.11, C:0.29, G:0.33, T:0.27
Consensus pattern (104 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCC
GGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 56844 -- 57343
TTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGGTGGTGG
TGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACTCCTCCC
TCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCG
GACCCGCGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGCGCCCCC
GGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTTTGGTCG
GAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGG
AGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGACCAACT
CCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 57637 -- 58136
TCGGACCCTGGCCGTAGCGGGCCTACGGCCGGCCACTATGCCCCTACTACCCATAGTGGTCCCGT
AGGACCGACCCCTCTGGGGGACCCGGGCGCGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGC
GCTTTCCCGGGACCCCCTACCCCATAAGTGGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCA
CCATCTCTAAAGTGGGTGGGGCTAGCGCGTTTTCCTTAGGGGAATTCTGTGGCGCACGCGCCCCC
TAGGGAAGCGCGTAGCGCATAAAATTTTGCATGGATTCATGACTTCACATAATTTAATTTCATTG
AAAATTAAAGCAAAGAGGCCGGGCTTTCGAACAGAATAATGAAGATCCAGTTTGGGCAGGGGGGT
GCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCCTGCCGTAATAGACAAAAAAAACGAAAGA
TTCCTTAATACACGCCTCAACCGGATCGATTCACGTATTTGACGC
Found at i:57624 original size:139 final size:139
Alignment explanation
Indices: 57338--57636 Score: 564
Period size: 139 Copynumber: 2.2 Consensus size: 139
57328 TCCCACTCCT
57338 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
57403 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
66 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
57468 TCGTTCGGA
131 TCGTTCGGA
57477 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
* *
57542 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCC-TTCGGTCGGAGTGGTCCTCACT
66 CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
57606 TCGTTCGGA
131 TCGTTCGGA
57615 CCCTATCGGTCGGAGTGGTCCT
1 CCCT-TCGGTCGGAGTGGTCCT
57637 TCGGACCCTG
Statistics
Matches: 157, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
138 33 0.21
139 124 0.79
ACGTcount: A:0.10, C:0.30, G:0.32, T:0.27
Consensus pattern (139 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTT
CGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACT
TCGTTCGGA
Left flanking sequence: Indices 56838 -- 57337
GGACCCTTTGGGCCAGCCCGGGGGGGGCCGGAGGCCCCCCACCCCACCACCCACTCCATGAATGG
TGGTGGTGGGGCAGGGGGGGGCGCCGACAGGCGCCCCCGGCGGGCAGCGCGTAGCGCTGCCAACT
CCTCCCTCCGGTCGGAGTTGCCAACTCTCCCAACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTT
CGTTCGGACCCGCGGTCGGAGTTGTCTTCCCTTCGGTCAGACCCTTCGGGCAGGGGGCGCTACGC
GCCCCCGGCGGGCAGCGCGTAGCGCTGCCCTGGCCAACTCCCCCAACTCCCCCCACTCCTCCCTT
TGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
GGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGAATTCGGAGTTGTCCTCCTATCGGAGGA
CCAACTCCTCCCACTCCTCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 57637 -- 58136
TCGGACCCTGGCCGTAGCGGGCCTACGGCCGGCCACTATGCCCCTACTACCCATAGTGGTCCCGT
AGGACCGACCCCTCTGGGGGACCCGGGCGCGTAGCGCCGGGTCCACTTTGGAAGTTGCGCTACGC
GCTTTCCCGGGACCCCCTACCCCATAAGTGGTTCCCCCCTCCTATCGTCGGGGGGTCCCCCACCA
CCATCTCTAAAGTGGGTGGGGCTAGCGCGTTTTCCTTAGGGGAATTCTGTGGCGCACGCGCCCCC
TAGGGAAGCGCGTAGCGCATAAAATTTTGCATGGATTCATGACTTCACATAATTTAATTTCATTG
AAAATTAAAGCAAAGAGGCCGGGCTTTCGAACAGAATAATGAAGATCCAGTTTGGGCAGGGGGGT
GCTCCGCACCCCCCGCGGGTAGCGCGTAGCGCTACCCTGCCGTAATAGACAAAAAAAACGAAAGA
TTCCTTAATACACGCCTCAACCGGATCGATTCACGTATTTGACGC
Found at i:60076 original size:34 final size:34
Alignment explanation
Indices: 60009--60099 Score: 139
Period size: 34 Copynumber: 2.7 Consensus size: 34
59999 TTGGTCCGAG
* *
60009 GCGAGGACAACTCCGACCG-CGGGTCCGAGCGAA
1 GCGAGGACAACTCCGACCGAAGGGTCCGAACGAA
*
60042 GCGAGGACAACTCCAACCGAAGGGTCCGAACGAA
1 GCGAGGACAACTCCGACCGAAGGGTCCGAACGAA
*
60076 GTGAGGACAACTCCGACCGAAGGG
1 GCGAGGACAACTCCGACCGAAGGG
60100 AGGAGTTGGA
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
33 18 0.35
34 34 0.65
ACGTcount: A:0.30, C:0.30, G:0.34, T:0.07
Consensus pattern (34 bp):
GCGAGGACAACTCCGACCGAAGGGTCCGAACGAA
Left flanking sequence: Indices 59509 -- 60008
CCTGTCGGAGGGCAGGGGGCCTTGCCGGCCCCTTTAAAGGGGGGCGCGTAGCGCCCCCCTGCCCT
TGGGGGCCCCTGCCCGGCGAACAGGAATCCCAGTAAAAAACAGATCTCCCGAAAGAGTCGACGTT
CCGATCTCGATCAAGCGCGGAGCATAAACGAACAAGGCGGAAGCTGCGCTAATAAGGGTTTAATG
CATCGGAGTCTCTTGGAGCACCGAACCCGTGTCTTCATTACGGCACTACTACTACAGGGCCCTCC
GATAGGAGGGCCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAG
GAGTGGGGGGAGTTGGTCCGAGGCGAGGACAACTCCGACCTTTAAAAGGGGTCCGAACGAACTTT
TAAAAGGGCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGTGA
GGACCACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGTCCGAG
Right flanking sequence: Indices 60100 -- 60599
AGGAGTTGGAGGAGTTGGGGGACCACAAATATTTATTCCGCCTTTAAAGAGGAGTTGGCCCGAAA
TCCAATCCCTTCACCTCGAATTCACGTACGTAAGGTTCCCTTTAAATCAATTGGCGGAAATTCTG
AAGTGGAAGCGCTCTCATGGGGGGGTACACTATAGTGCGCTACGCGCTTCCCAGGACGGGTTTAA
GGCGCTACGCGCTTCCCGACCCCCTTAGTAGAAGTACAGGGGGAGGGGCTCCGGCTGTCGTTTCA
GCTTCCGCTCTCATATCTCCCGAACTTCAGATCTGCAGACTGCGGGCAAAGAGTATGGGCATGGA
GGGCAGGGAAGATGGGTGCTACCCAACCCCTTTTCTTCCTTTTACCTTGCCACCTCTTCACGATG
TAGCGATCCCCGATTTACGCGAGGTTGTTTGGGTTGAAAGCGGGTTCAGAAAATAGCAACTTTCC
AACCTTTAAAGTTGGAATTCCAAATATTTTCTGAATTCTCTAGGG
Found at i:61070 original size:35 final size:35
Alignment explanation
Indices: 61024--61127 Score: 208
Period size: 35 Copynumber: 3.0 Consensus size: 35
61014 TTAAAAGCTG
61024 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
61059 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
61094 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
1 AGGTTACTTTAATTTAATTTCCTTGAAAATTAAT
61128 GATTAACCGC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 69 1.00
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (35 bp):
AGGTTACTTTAATTTAATTTCCTTGAAAATTAATT
Left flanking sequence: Indices 60524 -- 61023
TGAAAGCGGGTTCAGAAAATAGCAACTTTCCAACCTTTAAAGTTGGAATTCCAAATATTTTCTGA
ATTCTCTAGGGAATCAGCCCTTGAGTTCAACCATTTGTTTGGTGACTCGGGAAATTCAGGGGAAT
CGGGTGGATTCCAAAAGAATTGGGTTTAAGGGGAAGCGCTAGGAGCCGCTTAGCCCGGCAAGGGT
ACTACCTACCTGACGGGGTGGGTCAATCAATTATTCGCCTAGCGCTTTAGCTTCCGGGTTTTAGC
CCGCACGAAGGCAGGTCAGCCTTAAGGCTGCCCTTTAAAGGGGGTTTAAAGTAGCGACTTTAAAC
CAACTCCTCCAACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTT
AGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCGCTTCGCTCGGGCCCTGCCAACTCCT
CCCGGTAGGTCGGAGTTGTCCTCCCGGTAGGCCTTTTAAAAGCTG
Right flanking sequence: Indices 61128 -- 61627
GATTAACCGCCCTCTCCCTTCGGTCGAGTGTCTAAAGACCGCTTTAAAGTCACTTTAATTTCATT
GAAAATTCAGTTCTTTTAAGGGCAGGGGGGCGCTACGCGCCCCCGCGGGGCCGGCCAGGCCCCCT
GCCCTCCGATAGGAGGGCAACTCCGAATTCCGAGAGGGAGGAGTTGGTCCGATAGGACCACTCCG
AATTCCGAGAGGGAGGAGTTGGAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGACGGCG
CTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCCTCACTTCGTTCGGACCCTA
CAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGAATTCTGGAGTGAGGAGGAATTGAGCTCTA
GTCCCTCGAGGAGGGTTCGGGTTATTTTTCTGTTTCCCCCCCATC
Found at i:61864 original size:25 final size:25
Alignment explanation
Indices: 61836--61891 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
61826 CACGATCGAG
*
61836 CGTGAACAAGAC-ACGAGTGAACGAA
1 CGTGAACAAG-CTACGAATGAACGAA
*
61861 CGTGAACAAGCTACGAATGAACGCA
1 CGTGAACAAGCTACGAATGAACGAA
61886 -GTGAAC
1 CGTGAAC
61892 GATTCTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 7 0.25
25 21 0.75
ACGTcount: A:0.41, C:0.21, G:0.27, T:0.11
Consensus pattern (25 bp):
CGTGAACAAGCTACGAATGAACGAA
Left flanking sequence: Indices 61336 -- 61835
AGGAGTTGGAGCGCTTAAATTCAATCAAATTACTCAGGTTTTCGCGACGGCGCTCCTTTAAAGGG
CCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTTTAAAGA
ACCTTTAATTTAGTTTCAATTCAATTTAAGGCCTCACTTCGTTCGGACCCTACAGGGCAACTCCG
AATTCCGATAGGGAGGAGTTGGAATTCTGGAGTGAGGAGGAATTGAGCTCTAGTCCCTCGAGGAG
GGTTCGGGTTATTTTTCTGTTTCCCCCCCATCAATTCGCATAGCTGCGCCCCGGTTCCCCTTTCC
TGAACCATGAGAGGATAAGTCCGATCGTGGGGCGAGCGATAGCGAGCCACTTACCCCCGATAGGG
GGTAAGGGGATCCGACAGGATCCACTTACCCCGATAGGGGTAAGGGGCTCTTCTGACTTCTGAGG
TTGGCCATAATTGGCTGATCCATAGAAAGAAGGTTCACGATCGAG
Right flanking sequence: Indices 61892 -- 62391
GATTCTTTAAACGATACAGTGAAACCCACTACACGGTGAAGGGATTCGAACCCGTACTTTAAATA
CTTTAAAGGCCCACCAGACCGCTCTTTCTGGGGGGTGGGATATAGAGTCAGCTTTTGTCGCGGGG
GCCTTAGGCTCCCTAATCCTCCACACTGTGGTTTTATCCCTCCCGGCGCTTTCTTCTCCGATCTG
GCTTTTAAAAGGGCTTACGCTATTTAGTTCTTCCGCTTCGCGGAAGATTTCGATACATACTGGGT
CACCAGTCGTCGCGTGGAATCAAGTAAATAGAATTTGGTTCGTTCTTCCGCTAAGTCGTCCCTTT
CGTCTAGAGGTTAGGACATCGTCTTTTCATGTCGAAGACACGGGTTCGATTCCCGTAGGGGGTAA
AAGGAAGAGAGTTTCCTACCAGTACATAAGACCGGTTCCTCCCTAGAAAAAACCCTCCCCGGTCG
TCGTGGGAGCCTTTAAAGGCAAGTCTTCCGCTTCGCGGGAGCCGG
Found at i:63466 original size:35 final size:35
Alignment explanation
Indices: 63422--64424 Score: 1970
Period size: 35 Copynumber: 28.7 Consensus size: 35
63412 CCTCCGATAG
* * **
63422 GAGGGCCACTCCGACCGATAGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63457 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63492 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63527 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63562 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63597 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63632 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63667 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63702 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63737 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63772 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63807 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63842 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63877 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63912 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63947 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
63982 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64017 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64052 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64087 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64122 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64157 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64192 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64227 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64262 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64297 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64332 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64367 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
1 GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
64402 GAGGACCACTCCGACCTACCGGG
1 GAGGACCACTCCGACCTACCGGG
64425 AGGAGTGGGA
Statistics
Matches: 964, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 964 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
Left flanking sequence: Indices 62922 -- 63421
CTCACTGTCCTTTCTTTTGGAACAAAGCGAAAAACTCGATGCAGACCCTATTGGGGGCAGGGAAA
GGAATAGACATCCTCTATTATTGGGCATCCGCTCACGAGATGTACGACGCCCTGCACATCCTAGC
CTTTCGGGCAGTGGTATTGTAGATAACACTAATAGTAGTACCTTGAGCAATGAAAATTGAAAGGA
CATTCTGGAGATTCGTGCCGTTCTAGAGGACTCACTAGATTGGCACCAGTCTTGAAGGGGTGCAC
CTCCCTTTCGTTCGGTTGCGGCCCTCCTTAGGGAGGGGTGGTGTTTGGGGGGGGCGCGCGTGTCA
CTCGATGGGCACCCCCTACCGAGTGTAAGAAGCCGTTGAGTCTTCGACCCCTTAGAAAGGCGTGG
CCAATTCCTTTCTTGGAGTTGTATAGGCAATTTAAAGGCGGGAAAGCCGCAGAGCAGATTCGATG
GACATGGGGAGAGAATGTCCGGCCTATCCAAGGGCCCTCCGATAG
Right flanking sequence: Indices 64425 -- 64924
AGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGCCGGCAAGGCC
AACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCCTTTTAAAGCG
TTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGCCCTCCGGCAGAAGG
GCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGA
GTTGGCCCGATAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGACATAAGCACTTTTTAGTTA
GGCAAATGGCAGGCCCAAAGGACAACCTTTAAAGGGGGCTCGCAAGCTCGCCCCCCCTGCCCCTT
TCTTTTCCTGAGATTGAGTGATAAGGGATCGGGTGCCAAGTGCTAATCGATCACTGCAGCCGGCC
TTCAACCATTACTGGGGATGGCCCACGAGGTGTAGCGCAGTCTGG
Found at i:64434 original size:9 final size:9
Alignment explanation
Indices: 64422--64475 Score: 90
Period size: 9 Copynumber: 6.0 Consensus size: 9
64412 CCGACCTACC
64422 GGGAGGAGT
1 GGGAGGAGT
64431 GGGAGGAGT
1 GGGAGGAGT
*
64440 GGGGGGAGT
1 GGGAGGAGT
64449 GGGAGGAGT
1 GGGAGGAGT
*
64458 GGGGGGAGT
1 GGGAGGAGT
64467 GGGAGGAGT
1 GGGAGGAGT
64476 TGGCCGGCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.19, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 63922 -- 64421
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGA
CCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGT
GAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAAC
GAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTC
CGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
GGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGAC
CTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACT
CCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACC
Right flanking sequence: Indices 64476 -- 64975
TGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGC
CCTCCGGCAGAAGGGCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGG
GAGGAGTTGGAGGAGTTGGCCCGATAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGACATAA
GCACTTTTTAGTTAGGCAAATGGCAGGCCCAAAGGACAACCTTTAAAGGGGGCTCGCAAGCTCGC
CCCCCCTGCCCCTTTCTTTTCCTGAGATTGAGTGATAAGGGATCGGGTGCCAAGTGCTAATCGAT
CACTGCAGCCGGCCTTCAACCATTACTGGGGATGGCCCACGAGGTGTAGCGCAGTCTGGTAGCGC
ATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCT
Found at i:64449 original size:18 final size:18
Alignment explanation
Indices: 64426--64475 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
64416 CCTACCGGGA
64426 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
64444 GGAGTGGGAGGAGTGGGG
1 GGAGTGGGAGGAGTGGGG
64462 GGAGTGGGAGGAGT
1 GGAGTGGGAGGAGT
64476 TGGCCGGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.18, C:0.00, G:0.70, T:0.12
Consensus pattern (18 bp):
GGAGTGGGAGGAGTGGGG
Left flanking sequence: Indices 63926 -- 64425
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGG
ACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAG
TGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGT
CCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTAC
CGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGA
Right flanking sequence: Indices 64476 -- 64975
TGGCCGGCAAGGCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGA
CCCCTTTTAAAGCGTTACTTTAATCTAATTTCAATGAAATTAAAGTGCCACTTTAAAGGGCCCGC
CCTCCGGCAGAAGGGCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGG
GAGGAGTTGGAGGAGTTGGCCCGATAGGGCAACTCCGAATTCCGATAGGGAGGAGTTGGACATAA
GCACTTTTTAGTTAGGCAAATGGCAGGCCCAAAGGACAACCTTTAAAGGGGGCTCGCAAGCTCGC
CCCCCCTGCCCCTTTCTTTTCCTGAGATTGAGTGATAAGGGATCGGGTGCCAAGTGCTAATCGAT
CACTGCAGCCGGCCTTCAACCATTACTGGGGATGGCCCACGAGGTGTAGCGCAGTCTGGTAGCGC
ATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCT
Found at i:67508 original size:72 final size:71
Alignment explanation
Indices: 67391--67529 Score: 251
Period size: 72 Copynumber: 1.9 Consensus size: 71
67381 AGCGTTTCCC
*
67391 CTAGTCCCAGTTGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTTGGTTGATGATTTTCCGACT
1 CTAGTCCCAGTCGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTT-GTTGATGATTTTCCGACT
67456 AACAATA
65 AACAATA
*
67463 CTAGTCCCAGTCGATGATTTTCCGAGACTCTCTCGCCGCGAGAGTTGTTGATGATTTTCCGACTA
1 CTAGTCCCAGTCGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTTGTTGATGATTTTCCGACTA
67528 AC
66 AC
67530 GATAGTTGGT
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 21 0.32
72 44 0.68
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (71 bp):
CTAGTCCCAGTCGATGATTCTCCGAGACTCTCTCGCCGCGAGAGTTGTTGATGATTTTCCGACTA
ACAATA
Left flanking sequence: Indices 66891 -- 67390
TGGAAGTCCCGCGGGTCATCGTTTCTTCAATTGGCACTTTTCTTTCGGAGAAGATGGTCCTACAT
TGGTACCTATTGAAGAACTTTTTAATGAGTGAAGAGAAGGCCTTTAAAGGCTCTCTAAGGAAGGA
ACTGTCTGGCTAAAGAAGGAATTCTGGAAAGGTACTTTAATTTAATTTCATTGAAAATTAAAGCA
TTATACAGAAGGCTGCTGTCGTCTCGATTCCAAGTGGTGCTCCGTAGCGGCCATCGCCATCCCCA
CTAAGACCTCACCTGCCGGGGGCTTGTGCAAAAGAGAAACGTCGGTCACATTCAAACAAACGAAA
AAGAAACCGCTTTAAAGTAAAGTACACACGAAAGAATTCAGTAGATAGAAGACATGCTCTCTTTC
AAGAGCCCGTTCCTTCTCTTCACTCAGGCAAGCTCATCTTGTTCTCATTCATACAGTTCTTCAGG
AGGAAACAAAGAGTTCTCTTTAAAGTAGATGTTCCAGCGTTTCCC
Right flanking sequence: Indices 67530 -- 68029
GATAGTTGGTGCTTGGGTTGGAGGGGAAGGAAGGGCAAAGTGGTTTCTCTTCATCCTTGCAGACG
ATCCCGAAGACCTGGGAAGAGTCCGAAGCAGACGATCCTCCCACGGGGAAGACAATTCCGCCCAC
CCTACGCAGACGATCCCGCCCCGACGCAATGCAGACGATCCCGGCAAATTCAGATAGATAGTTGA
TGATTTTCCATAACCCTCTCTCACTCACTCACTCGGAACCAAAACCCACTCTCACGCGCTCTCAC
TCACCCGGAAGTTAATGATCTTCCTACACCAATTCCGAGAGATAGTTCATGAGCGGGCCTGCGAA
GGCGTTTAAAGGGCTGTTGTATAATCCGAGTTTGATCCGTGGTTCTGGACCTGGACCTTGGGGCT
ACGCGCGGGGCCTGACGTGTGCACCGGAACTGCTTTGAAGGAGCGTACTCCGTGGCTCCACGTGC
TGGCTTCTGACGTTCTGGTTATGGTTCCGGTTCGGAGGCCCATTC
Found at i:68491 original size:19 final size:19
Alignment explanation
Indices: 68467--68504 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
68457 GATTTCCGGT
68467 TTAAAGTCATGTAATTTAC
1 TTAAAGTCATGTAATTTAC
68486 TTAAAGTCATGTAATTTAC
1 TTAAAGTCATGTAATTTAC
68505 CCGCCCACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (19 bp):
TTAAAGTCATGTAATTTAC
Left flanking sequence: Indices 67967 -- 68466
CTCCGTGGCTCCACGTGCTGGCTTCTGACGTTCTGGTTATGGTTCCGGTTCGGAGGCCCATTCCG
GCGTTCAGACGCCCAGGTTTCTACCGGCCCTAGTTGCGTGGTGCCTCGGGCCGGCCACTTCGGAT
GAGACGGTTCCCTGCCCTACGCTCTCCACGTTGCGTTGCCTAAGGCACCCCCGCTCCGTAATAAC
CGGGTATAGGGGGTGCCTTCGTGTCCCTTGGTTTGACGCTGTTCTGTGTGCATGGAAATCATTAT
ATAGAATGAACCAGTTTAAAGGCCCGATATCGACCTTTAAAGGCTTTTGCTACTGATTCGAATTC
GGGCCTAAAGACTACTTCCATTCCTTTCTCTACGCTGGTGATGAAGCTAACGTGCACTTACTGTT
GGTAGCGCGTTCCGCCATAGCACGCACTAGCCCGTAGCTACAACTTCCTGGTGCCCTTAGCTCCC
ACGGTGATGCTCCGATCGCTGATTATCGCGGAGCAGATTTCCGGT
Right flanking sequence: Indices 68505 -- 69004
CCGCCCACGTACGATCCTTTGCCATACCCACCGTGCCCCTCTTTTACGAGACCGATCCGCAAACG
GAGGAGGCTGAAGCGACTTTCCAGGCCATTTTATCCAACTCCTCCCTCCGGAATTCGGAGTTGCC
CTCCTGCCGGAGGGCGGGTCCGAGGCGAGGACAACTCCGACCGCGGGTCCGAGCGAAGCGAGGAC
AACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACC
ACTCCGACCGAAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGAAGACAACAAATGATTCCGAAGG
GTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGG
TCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCCCTTTAAAGGAG
CGCCGTCGCGAAAACCGTAAGAACCTTTAATTTTCAATGAAATTA
Found at i:69685 original size:33 final size:33
Alignment explanation
Indices: 69631--69694 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
69621 ATAGGGAGAG
* *
69631 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
* * *
69664 GGTCGGAGTTGTCTTCCCTTCGGTCAGACCC
1 GGTCGGAGTGGTCCTCACTTCGGTCAGACCC
69695 TTCGGGCAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGGTCAGACCCGC
Left flanking sequence: Indices 69131 -- 69630
GAGTGTCCTAGGGCGAGTGCATCAAACATCGAGTAGAAATCGAGTGTTGACAGCGCTACGCGCTT
CCCACGTGAAGGGGGCGCGTGGCGCCACAATAGTGGCCTCGAAACCATCTTTGAAGGTACGAAGT
CACTCGAGTTGGTTTCCGGAAAGGGGGGGAGGGCAGGGCCCCCTTGGGGGCTCCTTCAAAGGTGG
CCTAAAGGCCACCCTTAGAAGGCAAGGGCACTATCAGCGTTACAAAGACTTTTTAATTTCATTGA
AAATTAACGAGAACTTTAAAGCGGCTTTCCCTTTTCCCTTTTCTCTGAAGGGGAAGGTATAATGT
GGAAGGCTTAACGCGAGGAACGAACCGAAGAAAGGGATCGTCTGTTTCCAACTCCTCCCTATCGG
AATTCGGAGTTGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 69695 -- 70194
TTCGGGCAGGGGGCGCTACTTTTAACCCCCGGCGGCCAGCCCTAGGGCTGCCCTGGCCCGGCAGA
AGACGATTTTTCCGGAATCGGATTGCGCCTCAGAAGCAGCTGCTGCGGGGCGTGCGAAACGCCCT
GCTCTTGCCTCGTGTTTGGAGAGAGGGCTCAGCTCAATCAGACTCAGCTCGATTGGCCGACTCAG
AAGCATCTACCGAAGCAGCCCTTTTAAAAGGGTCCTACTCAGCAGCTCGAGATACCGCATAGACT
ACGGACTCGGGCCCTACGGGGCCACGTCACTGGGGTAGGGGCCTGGGGGGTGCGGACCCGGGCGG
GTAGCGCTACGCGCTACCCTGGCCCCAGTAGGGGCCTCAAAAGCTTGCGAAGGCTGCCTTAAGGC
ACCACAGTCAGCTCGCTGTAGCGCCTGTTCTTATCCCTTCGTTCCTAGAACCTTGCAGAGGCCCT
TAGCTAGGGAGGCGATACCAGGGCTAGTTGGTATGACTGCCTACC
Found at i:71439 original size:43 final size:43
Alignment explanation
Indices: 71391--71526 Score: 196
Period size: 43 Copynumber: 3.3 Consensus size: 43
71381 GTCCGAAGGA
71391 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
1 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
71434 CAACTCCGAATTCCGATAGGGAGGAGTTGG---TCCGA-AGGA---
1 CAACTCCG-A--CCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
71473 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
1 CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
71516 CAACTCCGACC
1 CAACTCCGACC
71527 CTCTCCCTAT
Statistics
Matches: 83, Mismatches: 0, Indels: 20
0.81 0.00 0.19
Matches are distributed among these distances:
36 18 0.22
38 1 0.01
39 13 0.16
40 4 0.05
42 4 0.05
43 24 0.29
44 1 0.01
46 18 0.22
ACGTcount: A:0.25, C:0.26, G:0.34, T:0.15
Consensus pattern (43 bp):
CAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGG
Left flanking sequence: Indices 70891 -- 71390
CGAAACGGATCCTTTTTTCTGTATCGAGAAGCAGAGTTAGTGATAAAGAGGACGGGAATTAAGGA
TGCTTTTTGAAAAACTTTCAGAAATTTGTTTTGTAATGTCTTTTCCGAGTTGCGTGATAACCCGG
CTATTCAAAAACGTGCTCGTACGGAACAAGAAGCAAGACAGTACGAGACGAAGTCGGAACTTTAA
AGTCAAGTATTCTACCGGTCTTGACGCCCTATCCTAAAGGCTTAGGCCATAATCCGTAGACCAAT
CCACCCCTAATTAAATTCCGTTCGGCAGTCTTTACTCGCTATAGAGAAATCGTCCTTGTCCTGTA
ACCGGTAGGCTAAGATTCAATTGCCAACCGGTCTTCAATTAATTTTAAAATACATGACTTTAACA
TAAATTAAATTCAATTCCAGTTGCCGGTTACGAAGGCCCATTACTCATGAGCTCTCGCTCAACGG
GAAAGAGCCGTATGAAGGGCCAGGGGCCCCCAAGGGTCCGAAGGA
Right flanking sequence: Indices 71527 -- 72026
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCT
ACCGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCAACAAATAATTCCGCACGGGAGGAGTTGGCA
GCGCTACGCGCTGCCCTAGGGGGGCCCCCCTGCCCCACTCTGATAGTAGCAAACCCTCCACGCTT
TCCCTCTGCAAAGAGGTCTTTATTGGGCAACAACCTGAATTGGTATATAGATATCGGATTCACCA
CTCCCACTCTAAACGGCAGGGTGGCCTACGGCCACCTTTAAAGGGCAGGGGGGCGAGCTTGCGAG
CCGGTCAGCCTGCCGGGCTGCCCTGCCCAGGAAAACGCGTAGCGTTTTCCTACGGGGGTACTACA
AAGGTCTTCTAACCGGCAAGGCCCCCTGCCCCCTGTTGGGGGGGGGCTGCCCTGCCCTCTGGAGC
AGTCTGAACCCTTTCTCTTCGTAGGCTAGTTCCACTGGTCGGCTG
Found at i:72826 original size:23 final size:24
Alignment explanation
Indices: 72780--72826 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
72770 AGGCACAGGG
72780 CAACTCCGAATTCCGATAGGGAGGC
1 CAACTCCGAATTCC-ATAGGGAGGC
72805 CAACTCCGAATTCC-TAGGGAGG
1 CAACTCCGAATTCCATAGGGAGG
72827 AGTTGGTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.28, C:0.28, G:0.28, T:0.17
Consensus pattern (24 bp):
CAACTCCGAATTCCATAGGGAGGC
Left flanking sequence: Indices 72280 -- 72779
GGGGTAAGAAACCATTCTAGAGATAATTGAGTCTTCTCCCAGAACTGGAAGCAACTAACCATTTA
GATTTTCCAACAACTTCTGTGAACAACCGGATCTGCTATCTGACCAAGCGGGTTCCGGCGACTTC
GGTTCTTAGTTAGACATGTTTAATCCAGGGCCAGGGTCCGACCGCGGGTCCGAGCGACTTTAAAG
CGCAACTCCTCCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTTGTCCTCACT
TCGTTCGGACCCTTAAATTGAATTGAAACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGT
GAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGAGTTGGAGGACAACAAAGAATTCCGCCTTT
AAAGAGGAGTTGCCAGGGTCCGAGCATAGCGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGG
GCGCTACTTTAAACCCCCGGGGGCCGAACCCTGCCAGGCACAGGG
Right flanking sequence: Indices 72827 -- 73326
AGTTGGTCCGACCGACCTACCGGGAGGAGTTGTCCTCCCGGTAGGTCGGGCAGGGGGTTAAGATT
GAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTT
CGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTC
GTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTA
GTTTCAATTCAATTTAAGGCCCGGTTCGCTCGGACCCGCGGTCGGAGTTGCCCTCGCCTCGGACC
AACCCCCCCAACTCCTCCCGGTAGGTCGGACCCTGGATTTGCCGGGAAAGGGGCGTGTTGTCCCC
CTACCATTATCCGACAGTGCGCGGAGCTCGAGACATAGAAAAATT
Found at i:73109 original size:34 final size:34
Alignment explanation
Indices: 73066--73132 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
73056 ATAGGGAGAG
73066 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
73100 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
73133 TTAAAGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.09, C:0.31, G:0.30, T:0.30
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 72566 -- 73065
AACTAAATTAAAGGTTCTTTAAAAGGGTCCGAACGAAGTGAGGACAACTCCGACCTACCGGGAGG
AGTGGGGGGAGTTGGAGGACAACAAAGAATTCCGCCTTTAAAGAGGAGTTGCCAGGGTCCGAGCA
TAGCGAGGACAACTCCGACCTACCGGGAGGAGTGGGGGGGCGCTACTTTAAACCCCCGGGGGCCG
AACCCTGCCAGGCACAGGGCAACTCCGAATTCCGATAGGGAGGCCAACTCCGAATTCCTAGGGAG
GAGTTGGTCCGACCGACCTACCGGGAGGAGTTGTCCTCCCGGTAGGTCGGGCAGGGGGTTAAGAT
TGAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGC
TCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACT
TCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGATAGGGAGAG
Right flanking sequence: Indices 73133 -- 73632
TTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGCCCGGTTCGCTCGGACCCGCGGTCGGA
GTTGCCCTCGCCTCGGACCAACCCCCCCAACTCCTCCCGGTAGGTCGGACCCTGGATTTGCCGGG
AAAGGGGCGTGTTGTCCCCCTACCATTATCCGACAGTGCGCGGAGCTCGAGACATAGAAAAATTG
CTATGGATCACCACCCCAATGATTCTCTGGACCCTTACAGTTCAGAAGAGGACTCTGCTAGTTCA
GAGGAAAGGAATACCTCTTCGGAAGAATAAAAAGGAACTTCATGCGGTCGGTCCCGGAGGGCCGC
CATAAGGAAGCGCTACGCGCTTACCTTCCCTTCTTCGGGCTCGAATCCATGGGATAACTCAGAAG
CCAGACTCGGTGCCGACGATAATACAAGGAGTCGGCACCCAGAATAATTCCAGGGAGGTCCTGAA
GATAGTCTGCGCGGTCTGCTAATATCTGTAGTAGAAGGCTCGCAG
Found at i:74508 original size:86 final size:86
Alignment explanation
Indices: 74363--74548 Score: 345
Period size: 86 Copynumber: 2.2 Consensus size: 86
74353 CGACCGATAG
* *
74363 GGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
1 GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
74428 CTCCGACCGAAGGGAGGAGTT
66 CTCCGACCGAAGGGAGGAGTT
*
74449 GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCA
1 GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
74514 CTCCGACCGAAGGGAGGAGTT
66 CTCCGACCGAAGGGAGGAGTT
74535 GGAGGAGTTGGTCC
1 GGAGGAGTTGGTCC
74549 GGAGGACAAC
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 97 1.00
ACGTcount: A:0.26, C:0.23, G:0.38, T:0.14
Consensus pattern (86 bp):
GGAGGAGTTGGTCCTCCGATAGGAGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAA
CTCCGACCGAAGGGAGGAGTT
Left flanking sequence: Indices 73863 -- 74362
CGCTATAGTAACCACCATGCGCGTTCTATTCTCTTTTACTCCATCCCTGATCGCTTCTTATGAAG
TCGCGCTGGGAGCCAGTGCTTGCTATATAAAGATTGCTCCATGGATTTTCTCGGAGATGTTTGAT
GCTTCTCGGGGCTTCTTTGGCGACCGTAGAGTCACCGGAGTAATTGCCGGATGAATAGATTATCC
GAACGCTGCTGCTGTTGCTTCGCGGCGAGACGGACCCGACTCCCTCTATGGGACCACCACTCCCC
TGGAGCCCCAGAGCATGTCGGGAAACGAGAGGGCGAAGGAGCCTAGCGCTTCCCCTAGGGCGCCC
AGGCGAAGCCCTTTTTTCTCCTAGGGCTGAGCCTAGCCACTCGCTCCCCCCCCAAAAAGGGGAGG
AATAGCGAGGGCGGAGCTTAGCTTACTGAAGTAAGTCCCGGGACGCTACGCGTCCCCGGGTCCCC
ATTGCGGGGCGTTTTAAGGGTCCGAAGGACAACTCCGACCGATAG
Right flanking sequence: Indices 74549 -- 75048
GGAGGACAACTCCGACCGAAGGGAGGAGTTGGTTTTAAGCCCTGCGCCGAGAACTTCAATAATTT
TTCCCGACCGTGTCTTCGAGACACAGGTGAGGCTTAGGATCACGAACGTAAGGTGGAAAAGGCCG
GCTAGCCAAGGGCCCAGGGCCCCCGAAGGGACCTACCGGGTCCGAGGCGAGGACAACTCCGACCG
AAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGGGGAGTTGGAAGACAAC
TCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTCCCTATCGGTCGAGTGC
CTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGT
GGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCCTCTC
CCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGA
Found at i:74999 original size:146 final size:146
Alignment explanation
Indices: 74780--75098 Score: 593
Period size: 146 Copynumber: 2.2 Consensus size: 146
74770 TCCGACCGAA
*
74780 GGGAGGAGTTGGGGGAGTTGGAAGACAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCA
1 GGGAGGAGTGGGGGGAGTT-G--G-CAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCA
74845 CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCAC
62 CTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCAC
74910 TCCGACCTACCGGGAGGAGT
127 TCCGACCTACCGGGAGGAGT
74930 GGGAGGAGTGGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
1 GGGAGGAGTGGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
74995 GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
66 GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
75060 ACCTACCGGGAGGAGT
131 ACCTACCGGGAGGAGT
75076 GGGAGGAGTGGGGGGAGTTGGCA
1 GGGAGGAGTGGGGGGAGTTGGCA
75099 GCGCTACTTT
Statistics
Matches: 168, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
146 148 0.88
147 1 0.01
149 1 0.01
150 18 0.11
ACGTcount: A:0.24, C:0.25, G:0.37, T:0.14
Consensus pattern (146 bp):
GGGAGGAGTGGGGGGAGTTGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAGGACCACTCC
GACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCG
ACCTACCGGGAGGAGT
Left flanking sequence: Indices 74280 -- 74779
GAAGTAAGTCCCGGGACGCTACGCGTCCCCGGGTCCCCATTGCGGGGCGTTTTAAGGGTCCGAAG
GACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGGAGGGCAACTCCGACCGATAGGGTC
CGAACGAAGTGAGGACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGTCCTCCGATAGGAGG
ACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGG
AGTTGGTCCGGAGGACAACTCCGACCGAAGGGAGGAGTTGGTTTTAAGCCCTGCGCCGAGAACTT
CAATAATTTTTCCCGACCGTGTCTTCGAGACACAGGTGAGGCTTAGGATCACGAACGTAAGGTGG
AAAAGGCCGGCTAGCCAAGGGCCCAGGGCCCCCGAAGGGACCTACCGGGTCCGAGGCGAGGACAA
CTCCGACCGAAGGGTCCGAACGAAGTGAGGACAACTCCGACCGAA
Right flanking sequence: Indices 75099 -- 75598
GCGCTACTTTTAACTGCCCGGCAGGGGGGCGCTACGCTATGCCCTTTAAAGCCCCCGGCGCGGTT
GTTCCAGCTACGCCTTCCGCCTACGACGGCGGTCTAACGACACTCTTAGGCTAGGGAGAGGGTGG
TCCGGATGGGTCAGGTAGCGGCGCTTCTTCTTATAGAAGGCGGCCCACTTTTTTCCCCTAGAAGG
GATTCAATGAATTTTCAATGTACTTTTAGCGCTTCAAATTCAATTAATTTTAAATTAAACGCGAC
TTTAATTAATTAAAAGTGCGCGTTTTGGAAATTCTGTGAGCCCCTTATACAGAAGGGGGCACTCG
ACCGAATTTGGACACTCGACTACGGGTCCTTTGGACACGAGACCGGAGGGCACCATTGTGGAAGC
CGGGGAAGCGCTACGCGCTGGAACTAGGGTGCACTTCCCTGCACTTTCTTAGTGACAACCTTAGT
GGCGCTACGCGCTTTCCCGCTTCAGTGGGAAGCGCTACGCGCTCC
Found at i:75899 original size:34 final size:34
Alignment explanation
Indices: 75861--75927 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
75851 CCTCCCGGTA
75861 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
75895 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTT
75928 TTAAAGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.09, C:0.31, G:0.30, T:0.30
Consensus pattern (34 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTC
Left flanking sequence: Indices 75361 -- 75860
TAATTAATTAAAAGTGCGCGTTTTGGAAATTCTGTGAGCCCCTTATACAGAAGGGGGCACTCGAC
CGAATTTGGACACTCGACTACGGGTCCTTTGGACACGAGACCGGAGGGCACCATTGTGGAAGCCG
GGGAAGCGCTACGCGCTGGAACTAGGGTGCACTTCCCTGCACTTTCTTAGTGACAACCTTAGTGG
CGCTACGCGCTTTCCCGCTTCAGTGGGAAGCGCTACGCGCTCCCCACTGAAGTTCCCCCAACTTC
AGACATGGTGGTGGTGGGGCGCCTTAAAAGGCCAGCTTCTTGATGCCCATACCACACTTTTCTCA
CAGATGGTGGTGGTATGGGCATCAAAGGCTAAGCTGGCCCCAGCAAGGGGCAGGGGGTTAAGATT
GAATTTTCAATGAAATTAAATTAAAGGTTCTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGCT
CCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACTCCTCCCGGTA
Right flanking sequence: Indices 75928 -- 76427
TTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCACTTCAAATACTTAAGTT
TAAATTCAATTAAATTCAAGGTTCTTTGGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTA
TCGGACCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTT
GCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCCCCCGCGGGGGGCGCGTAGCGCCCCCCTGCC
CTTTAAAGCCAACTCCGACCTACGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGAGGA
GTGGGAGGAGTTGGGTTTAAAGGAGTTGGCCCTCCCCCTCCCGTAGGTCGGGGGAGTGTCCTCCG
GACCCTGGCTGGGGCCAGGGTAGCGCGTAGCGCTACCCGCCCGGG
Found at i:76156 original size:36 final size:38
Alignment explanation
Indices: 76085--76157 Score: 105
Period size: 40 Copynumber: 1.9 Consensus size: 38
76075 AAGGTTCTTT
*
76085 GGACCCACTCCTCCCTCTCGGAATTCGGAGTTGTCCTATC
1 GGACCAACTCCTCCCTCTCGG-A-TCGGAGTTGTCCTATC
76125 GGACCAACTCCTCCCT-TCGG-TCGGAGTTGTCCT
1 GGACCAACTCCTCCCTCTCGGATCGGAGTTGTCCT
76158 CACTTCGTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 13 0.41
39 4 0.12
40 15 0.47
ACGTcount: A:0.14, C:0.37, G:0.22, T:0.27
Consensus pattern (38 bp):
GGACCAACTCCTCCCTCTCGGATCGGAGTTGTCCTATC
Left flanking sequence: Indices 75585 -- 76084
GCGCTACGCGCTCCCCACTGAAGTTCCCCCAACTTCAGACATGGTGGTGGTGGGGCGCCTTAAAA
GGCCAGCTTCTTGATGCCCATACCACACTTTTCTCACAGATGGTGGTGGTATGGGCATCAAAGGC
TAAGCTGGCCCCAGCAAGGGGCAGGGGGTTAAGATTGAATTTTCAATGAAATTAAATTAAAGGTT
CTTTACCGGCAGGTTTTCGCGACTTTAAAAGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCT
CCCACTCCTCCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCT
CACTTCGTTCGGACCCTTTTAAAGAACCTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACG
AAGTGAGGACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGC
ACTTCAAATACTTAAGTTTAAATTCAATTAAATTCAAGGTTCTTT
Right flanking sequence: Indices 76158 -- 76657
CACTTCGTTCGGACCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCAGGGGGCCTTGCCGGCC
CCCGCGGGGGGCGCGTAGCGCCCCCCTGCCCTTTAAAGCCAACTCCGACCTACGGGTCCGAACGA
AGTGAGGACCACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGGTTTAAAGGAGTTGGCCCTCC
CCCTCCCGTAGGTCGGGGGAGTGTCCTCCGGACCCTGGCTGGGGCCAGGGTAGCGCGTAGCGCTA
CCCGCCCGGGTCCGCACCCCCCAGGCCCCTACCCCAGCCAGTGGCTTTAGCCCCTCAACCTCCCT
TCGGTCGGTTGAGTGGCTAAAGCCCCTCCCGGTGGGTCGGGGGAGTGTCCGGAGGACCCGTGCCG
GGCCAGGCAAGCCTTACGGCTTCCCTAATCACTATTGTGCACTCGACTAGGGAGAGGGAGAGGAC
AAAGCCAAAAAAAACGCATAGCGTGAGCACTATGGTGCGCGTAGC
Found at i:77172 original size:33 final size:33
Alignment explanation
Indices: 77126--77189 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
77116 TTGGCCCAAA
* *
77126 GGGTCTGACCGAAGGGAAGACAACTCCGACCGC
1 GGGTCCGAACGAAGGGAAGACAACTCCGACCGC
* * *
77159 GGGTCCGAACGAAGTGAGGACCACTCCGACC
1 GGGTCCGAACGAAGGGAAGACAACTCCGACC
77190 CTCTCCCTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.27, C:0.31, G:0.33, T:0.09
Consensus pattern (33 bp):
GGGTCCGAACGAAGGGAAGACAACTCCGACCGC
Left flanking sequence: Indices 76626 -- 77125
ACGCATAGCGTGAGCACTATGGTGCGCGTAGCGAACTGAGTTCGGGTGCGCTATAGTTCCACCCT
GCCCAACAACTTCGAAAGGTTAATTTCATTGAAAATTAAAGTAAATTCAATTAAACAGAAGAAGT
CTAAAGTCAATTAATTTTCAATTAATTGAAAATTAATCGAAACGAAACGTGAGGTACGAGCGTGA
AGGCGGGGACTACGCTTCCCGTCTATCGACCCTCGCATATGTGCAGCAAGAGGGCGCATATGCCT
GGACGAGAGGGCCAACGTACAATAGGTACAGCACACACCACTGGCAAGCGCACCTATGTCTCGGC
ATCAATAGAGTCTTCGGTGGAACCGGTGAACCACGCATCCGCCCTTTAAAGCTGGTTAGATGCGT
GGGGCAGAGGGCTCGTAGTACCCGCCACACCAAACCCCTAACTAACGGCGGTACCGTCAGGGTCC
TCCGACAGGAGGACAACTCCGACCGAAGGGAGGAGTTGGCCCAAA
Right flanking sequence: Indices 77190 -- 77689
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACCACTCCGACCG
AAGGGAGGAGTGGGAGGAGTGGGGGGAGTTGGCAACTCCGACCGAAGGGAGGGGTTGGACCGGGC
CTCAGTGCTTTCTCCTCGGCCGGGCGCTTATCAGCACCAACAACTTATTGAAGGGCGGCGGATAG
GTGGAGGTCAAGGGCGAGCCTTGTTGAGGGCGACAAGGGAGCACGAAAGGCGGTGGGGGGCCTCC
GGCCCCGGGCTGGCCCTTTGGGCCAGCCTCGGCCTTTCGTCACCTCCAGGTGGGGGGCCGGCCTG
GGCGGCCTGCTATCGGGTGTCCCCTTAAGGTGTAGGGTGAGCGGGGGGGCTCGGTCAATTCAATT
GCCTGTCAAAAGAGCACTTTAGAAGGATTGACGGATAAATCAAGAATTCGAACGATCAATTGCGG
GCGGCGTCCCGGAGACCCTAACCGGGCGGCCGCCTACAGCCTGGT
Found at i:80457 original size:33 final size:33
Alignment explanation
Indices: 80415--80478 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
80405 CCTCCCGGTA
*
80415 GGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGC
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
*
80448 GGTCGGAGTTGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTTGTCCTCACTTCGCTCGGACCC
80479 TTCGGAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.08, C:0.34, G:0.31, T:0.27
Consensus pattern (33 bp):
GGTCGGAGTTGTCCTCACTTCGCTCGGACCCGC
Left flanking sequence: Indices 79915 -- 80414
TCAATTTCTGGCCCTGCACCGAACATCCAATGGACCATGGACTAATAATAAACGGCCACTGTATT
ATGAGAAGACTACCATGTCCAGGAGACCGCCCCACAAGGTACATCTTGCGCCTATGGGCCGCTAT
AACTATCCAATACACTCGAAACTGGAACACCACTGAATGTAGGGCTCAGGAAAACGCTACGCGTT
TCCCTTTGTTACGGAAGGGGCGCCGGGGGCGCATAGCTAGCCGCCCCCTGCTCCCTTGCAGTGGG
CTGCCAAGCTACAAGCCCTATCTGTGGCGGGATTCTCTAAAAAGCAAAGGCCCTGGCGAATAAAG
ACCAGGGATATGCCCACCTGGAGACTTGGGATCTCAGCAGTGAATGGAAAGGATAATAAGTTCTA
AGTCGGTTCTGCATAGATAATACTCGAACGAGGAGGGAAAGCGCTATTTTCCGGGCCCGGCCCCC
ACTTGCCGGTGGGAACAAATCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 80479 -- 80978
TTCGGAATTCGGAGTTGCCCTCCTGCCGGAGGGCAGGGGGGCGAGCTTGCGAGCCCCCCTTTAAA
GGGGCCGAAGGCCCCCTGCCCTTGGCCGGCAGGTCGAGACGGTTGTAGGCTCCAACCCAGTATTT
ACCAACAAGCTTCTCGCTCCAACGAACGATATGGACCAATCGGCGTAGACTTGTACGAAATATAC
ACGCAAGACTCTAGTGAGACAAGTCACACGGGATGATGACCCCCGTTAAAAGGCATTGACAATGT
AGTTGGTTCCCCCTTTTAAAGCGGTCCGACCGAAGGGTCCGAGCGAAGCGAGGACAACTCCGACC
TACCGGGAGGAGTGGGGGGAGTTGGCAGGTTTAAAGTCGCTGCTTTAAACCCCCCTTTAAAGGGG
CCGAAGGCCCCCTGCCCTCCGGCAGGAGGGCAACTCCGAATTCCGAAGGGTCCGAACGAAGTGAG
GACAACTCCGACCTACCGGGAGGAGTGGGAGGAGTTGGGGGAGTT
Found at i:81896 original size:35 final size:35
Alignment explanation
Indices: 81852--81920 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
81842 GCGGTTAATC
81852 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
81887 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
1 ATTAATTTTCAAGGAAATTAAATTAAAGTAACCT
81921 CAGCGGCCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35
Consensus pattern (35 bp):
ATTAATTTTCAAGGAAATTAAATTAAAGTAACCTA
Left flanking sequence: Indices 81352 -- 81851
AAAAGCCCCCTTTCTCTCTCAGGACGGGCCGGAGCCGGGCAAGTATGGGGCCGGTAGGGGGGCCA
GGGCAGCGCTACTTTTAACTGCCCGCCGGGGGTTAAAAGGCACGCGCCCCCTGCCCCATACCCGG
TCCCCTTCTATCTTCGGGGAAAGCGCGTAGCGCTTTACCTAACGGGTAAGCGCGTAGCTAGCTAT
AGTGCCCCTTGCCCAAAAAGGCCCGGCCGTCTGCCCACTGAATTCGTGGGATTGGGTAAAGACTC
CTGGGTACCGGTCCTACGGACTCCTAGCCGGGGTCTTGCGTGCGGGCGGGGATCAGGTCAAGCGG
GTTTTAAGGCGCTTCGGAGTCAGAAAAGGATACTTGAAGGCGCAGCAGTTTAAATTAAATTAAAT
TAAAGTAACTTTGAAATAATTTGAAATGAAATGAAACTAAAGTACTTTTAAAGCGCTCCGACTTT
AAAGCGGTCTTTAGACACTCGACCGAAGGGAGAGGGCGGTTAATC
Right flanking sequence: Indices 81921 -- 82420
CAGCGGCCGGGTCCGAGCGAAGCGAGGACCACTCCGCCGAAGGGAGGAGTTGGAGGACAACTCCG
ACCTACCGGGAGGAGTTGGGCAACTTCCGCCCCCCACACCACCACCCCGAAGTGGTGGGGGGCGG
AAGTTGGGCTTTAGCCTACTCCTTTAAACCCCACCCCCACCCTAGTTGGTGGGGTTTAAAGGAGT
TGGGCCCCCTAAGTAGACTCTTACACAACGGCCTAGCACTATAGTGCCCGGCCGGCAGACTGAGT
GGTTGGATAGCTAGCCGAAAGCACATAAGGGTGGGACAAGACGAGAGCCCAATAAAACGTAAAGC
ATTTCCCTCTCCGAGACTAACAAAACGTGAACCGGGAGCATACATGACTTTAAAGTGAAAGAAGA
ACACAATTTGTGGAACCAGAGAAGGCCGAAGGTGTTGCCGGGCTAGGGAAGCCGTCTTCTTCGCG
GCTTCCGCCTCCGGCACTAATAATGTGGAGGGGACGCTAATAAGC
Found at i:86590 original size:9 final size:9
Alignment explanation
Indices: 86572--86616 Score: 81
Period size: 9 Copynumber: 5.0 Consensus size: 9
86562 CCGGAATCCA
*
86572 ACTCCCCCC
1 ACTCCTCCC
86581 ACTCCTCCC
1 ACTCCTCCC
86590 ACTCCTCCC
1 ACTCCTCCC
86599 ACTCCTCCC
1 ACTCCTCCC
86608 ACTCCTCCC
1 ACTCCTCCC
86617 TTCGGTCGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.11, C:0.69, G:0.00, T:0.20
Consensus pattern (9 bp):
ACTCCTCCC
Left flanking sequence: Indices 86072 -- 86571
TCTTGAGGCATAGAGGTCCCTTCGAGAGGGAAAGGAGGGCGGCACGGGGGGCGGCGTTCCTACCA
ACTGTGAGTGCAGGCGCCTGCGAACTCTGAGTACAAGGCAAAGCGAACTCTGAGTGCTGGGCACA
TGCAACAACTCCGAGTGCAGGGCACATACCAATCAAGTATATAGAGAAGAAGACCTTCCTAAGGC
TGACAAGAGATGCAAGCAGCCTGAGGAAAGTCGTCGTCTTCTATACACTCGATTGGTGAACCCGC
TCTCATGAGCTGCTGCACTCCGAGTTCACGTGTGCCGGCTTGCACTCAGAGTTGCGTGTGCCCTC
CTGAAAAGTAGGGAACACCGCCCTCTCAAACATCCCTAAAGCTACATTTAAGGAGAGAGGGCGCA
AAACTCCCTACTTTTGATGGGCTGTCAGAAATGTAGAGGTTGGTTAGATCCAGCTAATGGGCGAT
AGTTGGAGTCGGCGGCTCTTCCAGGATTCCCTTATCCGGAATCCA
Right flanking sequence: Indices 86617 -- 87116
TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGG
ACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTC
GGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACGCATCGGTAATCTG
TTGGGGCTGCTGGGGCGGCTGAATCTAGGGGCGCAGAACGATCGGGTAAGGCTAAGGCATAAAGA
CTATCCGAATGCCGGGAAGGCTAATGCATAAAGACTCTCAGCCTATCATTACCAGGGCCAATATT
AGCAGACCATGAGTCAGACCTAGGCAGCCAGCCATCAGTCAGTACTGCAGCCTCTTCGCCTGGCC
GGCAGGAATGAGGTTATGGCATCAAACCTTCTTGCCCTCACTCCC
Found at i:86659 original size:35 final size:35
Alignment explanation
Indices: 86620--86809 Score: 344
Period size: 35 Copynumber: 5.4 Consensus size: 35
86610 TCCTCCCTTC
86620 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
86655 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
86690 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
86725 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
** *
86760 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
*
86795 GGTCGGAGTTGTCCT
1 GGTCGGAGTGGTCCT
86810 TCGGACCAAC
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 151 1.00
ACGTcount: A:0.11, C:0.28, G:0.34, T:0.27
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTA
Left flanking sequence: Indices 86120 -- 86619
GGGCGGCGTTCCTACCAACTGTGAGTGCAGGCGCCTGCGAACTCTGAGTACAAGGCAAAGCGAAC
TCTGAGTGCTGGGCACATGCAACAACTCCGAGTGCAGGGCACATACCAATCAAGTATATAGAGAA
GAAGACCTTCCTAAGGCTGACAAGAGATGCAAGCAGCCTGAGGAAAGTCGTCGTCTTCTATACAC
TCGATTGGTGAACCCGCTCTCATGAGCTGCTGCACTCCGAGTTCACGTGTGCCGGCTTGCACTCA
GAGTTGCGTGTGCCCTCCTGAAAAGTAGGGAACACCGCCCTCTCAAACATCCCTAAAGCTACATT
TAAGGAGAGAGGGCGCAAAACTCCCTACTTTTGATGGGCTGTCAGAAATGTAGAGGTTGGTTAGA
TCCAGCTAATGGGCGATAGTTGGAGTCGGCGGCTCTTCCAGGATTCCCTTATCCGGAATCCAACT
CCCCCCACTCCTCCCACTCCTCCCACTCCTCCCACTCCTCCCTTC
Right flanking sequence: Indices 86810 -- 87309
TCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTTCGGAGGGCCCTACGCATCGGTAATC
TGTTGGGGCTGCTGGGGCGGCTGAATCTAGGGGCGCAGAACGATCGGGTAAGGCTAAGGCATAAA
GACTATCCGAATGCCGGGAAGGCTAATGCATAAAGACTCTCAGCCTATCATTACCAGGGCCAATA
TTAGCAGACCATGAGTCAGACCTAGGCAGCCAGCCATCAGTCAGTACTGCAGCCTCTTCGCCTGG
CCGGCAGGAATGAGGTTATGGCATCAAACCTTCTTGCCCTCACTCCCGATACCTTGTGAGAGTCC
AGTGCACTCTGCTGTGCTCTCCTTGATATGGAGGACATGGCTCTCAGGCCCTGGTGCTGAGCCTG
CGTAGCTGCTCAGTTCACTCCCTCCCATAGTCCTCAGTCTTATGGTGTGACTGAAGTCATGCACC
CTTAGTCCATTGGCATCGCATCTGCCTGCCTGGGCACAGGCTAGT
Found at i:86851 original size:105 final size:102
Alignment explanation
Indices: 86607--86839 Score: 297
Period size: 105 Copynumber: 2.2 Consensus size: 102
86597 CCACTCCTCC
86607 CACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
1 CACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
*
86672 CTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTT
66 CTTCGTTCGGACCCGATAGGTCGGAGTGGTCCTCAC-T
** ** * *
86710 CGTTCGGACCCGGTAGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCT
1 CACTC-CTCCC-TTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCT
* * *
86775 CACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGAC-
64 CACTTCGTTCGGACCCGATAGGTCGGAGTGGTCC-TC--ACT
86816 CAACTCCTCCCTATCGGTCGGAGT
1 C-ACTCCTCCCT-TCGGTCGGAGT
86840 TGCCCTCCTT
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
103 3 0.03
104 3 0.03
105 81 0.76
106 16 0.15
107 2 0.02
108 2 0.02
ACGTcount: A:0.12, C:0.31, G:0.30, T:0.27
Consensus pattern (102 bp):
CACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCGGTAGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCGATAGGTCGGAGTGGTCCTCACT
Left flanking sequence: Indices 86107 -- 86606
AGGGCGGCACGGGGGGCGGCGTTCCTACCAACTGTGAGTGCAGGCGCCTGCGAACTCTGAGTACA
AGGCAAAGCGAACTCTGAGTGCTGGGCACATGCAACAACTCCGAGTGCAGGGCACATACCAATCA
AGTATATAGAGAAGAAGACCTTCCTAAGGCTGACAAGAGATGCAAGCAGCCTGAGGAAAGTCGTC
GTCTTCTATACACTCGATTGGTGAACCCGCTCTCATGAGCTGCTGCACTCCGAGTTCACGTGTGC
CGGCTTGCACTCAGAGTTGCGTGTGCCCTCCTGAAAAGTAGGGAACACCGCCCTCTCAAACATCC
CTAAAGCTACATTTAAGGAGAGAGGGCGCAAAACTCCCTACTTTTGATGGGCTGTCAGAAATGTA
GAGGTTGGTTAGATCCAGCTAATGGGCGATAGTTGGAGTCGGCGGCTCTTCCAGGATTCCCTTAT
CCGGAATCCAACTCCCCCCACTCCTCCCACTCCTCCCACTCCTCC
Right flanking sequence: Indices 86840 -- 87339
TGCCCTCCTTCGGAGGGCCCTACGCATCGGTAATCTGTTGGGGCTGCTGGGGCGGCTGAATCTAG
GGGCGCAGAACGATCGGGTAAGGCTAAGGCATAAAGACTATCCGAATGCCGGGAAGGCTAATGCA
TAAAGACTCTCAGCCTATCATTACCAGGGCCAATATTAGCAGACCATGAGTCAGACCTAGGCAGC
CAGCCATCAGTCAGTACTGCAGCCTCTTCGCCTGGCCGGCAGGAATGAGGTTATGGCATCAAACC
TTCTTGCCCTCACTCCCGATACCTTGTGAGAGTCCAGTGCACTCTGCTGTGCTCTCCTTGATATG
GAGGACATGGCTCTCAGGCCCTGGTGCTGAGCCTGCGTAGCTGCTCAGTTCACTCCCTCCCATAG
TCCTCAGTCTTATGGTGTGACTGAAGTCATGCACCCTTAGTCCATTGGCATCGCATCTGCCTGCC
TGGGCACAGGCTAGTCTGGCAGCTCTAGTCACCCTCCCTATCTCA
Found at i:90458 original size:39 final size:39
Alignment explanation
Indices: 90400--90513 Score: 219
Period size: 39 Copynumber: 2.9 Consensus size: 39
90390 ATAACGCTTA
90400 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
1 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
*
90439 TAAGTTACTTTAATCTAATTTCATTGAAAATTAAGTAGC
1 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
90478 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGT
1 TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGT
90514 TAAGTTCTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (39 bp):
TAAGTTACTTTAATTTAATTTCATTGAAAATTAAGTAGC
Left flanking sequence: Indices 89900 -- 90399
GGAACCGAAGCGAGGATCTCATGCTATCATTGAACGGCTACCGAACCGCCATACTCAGGTAACCG
GTATCTGTTCCAAGTACATCAACACCCCATAGCTACTTAGGGCCGCACCCTCATGGGTCCAGATC
CACGAATCCCGGCGTGATAGTGGCCTAAAGCAATTAATGGCGCAATCAAATAAGGCTCCACTTAA
TGCCGCAACACCGGTTGAGAAAGGGAAGCGAGAGAGGAACTGCAAGGGTCCGGGCGAAGCGAGGA
CAACTCCCCGAGCTTTAAAGGAGTTGGGATGGTATTTTTTCTTTCCTTGTGAGAGTACTGATTGC
ACTGAGTGAGAATAAACCGCACTTAGTGAGAATGCGTACTGATCCCTACTGGGTTCTTGAGCGGT
AGCCCTTCCCGGCAATTGTAGACTCGGATTCCTTCTCCCTAGGGTAGTAGCAGAGCTTTCCTCCA
GTCACTGAGTAGTAGCTGGTATGGCATGTCAGCCCATAACGCTTA
Right flanking sequence: Indices 90514 -- 91013
TAAGTTCTTTAAAGTAAAGTTTTTACTTTAATTTCATTTAATTTAAAATTAAAGTAATAAAAGTT
TTTGAATGAAAAATTTCCTTCTAAAAAAGGCGAGTACTTTCATCGGCCACTTACCCCCGATAGGG
GGTAAGGACTTTTTCTAGTTTTCCGCGGGTTTCAGCGCGTAGCGCCTCAACCTGTGTTCCCCCGC
TACGCGCTGGCCCCTCGCCGATAGGCGGGTAGCATCTGCTTTGAGCCCTCTCCCTTCTTTTTGCT
TTCCCCAAACTGGCCCGCCTCCCGGTAAGGCACTTCTTGCTCGAATATCTGCATCTCAGAGGGAG
TACTAGAGCTAGCACTAGGGGTCAGAAGAGGGCGTGGACGGATACAGAACAGACATGCTTCTTCA
GCCGACATTCCTATCCTTAGTAGGTGCCAGTGCAAGACCGAACGCAAGAATTTGTGCGCATCGAT
TTCGACTTCTTCACTACTGTCATCCATCGTCATCCCCGGCAAGGC
Found at i:91512 original size:34 final size:34
Alignment explanation
Indices: 91465--91535 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
91455 CTCGTGCGCC
*
91465 GGGTCCGAGCGAAGCGAGGACAACTCCGACCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
* *
91499 GGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
1 GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
91533 GGG
1 GGG
91536 AGGAGTTGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.28, C:0.28, G:0.37, T:0.07
Consensus pattern (34 bp):
GGGTCCGAACGAAGCGAGGACAACTCCGACCGAA
Left flanking sequence: Indices 90965 -- 91464
CGATTTCGACTTCTTCACTACTGTCATCCATCGTCATCCCCGGCAAGGCGGCCCCCTCCTGGGGA
TTATCCCTTGCCGACTGCGGCCCGGCTGGGGATTATCCTCTCGTTGAGTCAATTGCCACAACCTC
CCGGACAATGTAATCCAATTGTTGATGATGTGACCTACTCTCTGCCCATTCCCCCGGTGGACCAC
AAAGCAAAATTGAGGCATTTCACCGCTGCTTCGGTCACTTACCGGGGCTACTCCCCGGGGATTCT
TTCATACCGATGAGCCAGGAATAGAATATTCCCACGTACACTACTAAATGGTTGCCTTTATCGAG
CTTCGAACCTTCCTTATCATACGAAACGGGAAGTAGTGCGTGCACCCACATAAGATCTCATTCTC
GCTACTCATGGCTCTGAAACAGCAACTCCACGAGAGGAAAAGCAGGTTTAAGGTACTGCTTCGGG
CAATCGATACAGACACGTTTACGCTTAGGCAAATGCTCGTGCGCC
Right flanking sequence: Indices 91536 -- 92035
AGGAGTTGGAGGAGTTGGCTTTAGAACTTCCCCGCTGCTATAGCTATGGGCTGGCCTAACCTTTC
TAAGGTTAAGCTATTAATTTATCATTGGTCAATAATGTCACGGTTCCACTATCGAGTGACTAATG
CAGCTAAGCTCCTTTCTTTCCGTCCTGGTACCTGGCTGAAACCCTCGGAACAACCCAACTCCCCC
CACTCCTCCCGGTAGGTCGGAGTTGTCCTCACTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCA
CTTCGTTCGGACCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCG
GTCCGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGG
CCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTT
GCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
Found at i:91783 original size:34 final size:35
Alignment explanation
Indices: 91745--91815 Score: 126
Period size: 34 Copynumber: 2.1 Consensus size: 35
91735 CCTCCCGGTA
*
91745 GGTCGGAGTTGTCCTCACTTCGTTCGGACCCT-TC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
91779 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
1 GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
91814 GG
1 GG
91816 AATTCGGAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.10, C:0.31, G:0.30, T:0.30
Consensus pattern (35 bp):
GGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATC
Left flanking sequence: Indices 91245 -- 91744
ATAGAATATTCCCACGTACACTACTAAATGGTTGCCTTTATCGAGCTTCGAACCTTCCTTATCAT
ACGAAACGGGAAGTAGTGCGTGCACCCACATAAGATCTCATTCTCGCTACTCATGGCTCTGAAAC
AGCAACTCCACGAGAGGAAAAGCAGGTTTAAGGTACTGCTTCGGGCAATCGATACAGACACGTTT
ACGCTTAGGCAAATGCTCGTGCGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGGTCC
GAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCTTTAGAACTTCCCCG
CTGCTATAGCTATGGGCTGGCCTAACCTTTCTAAGGTTAAGCTATTAATTTATCATTGGTCAATA
ATGTCACGGTTCCACTATCGAGTGACTAATGCAGCTAAGCTCCTTTCTTTCCGTCCTGGTACCTG
GCTGAAACCCTCGGAACAACCCAACTCCCCCCACTCCTCCCGGTA
Right flanking sequence: Indices 91816 -- 92315
AATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCCGAGTTGTCCTTCGGAC
CAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTC
GGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCA
ACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCC
CTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTAT
CGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCG
GACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCG
GTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGA
Found at i:91913 original size:82 final size:82
Alignment explanation
Indices: 91807--92495 Score: 1327
Period size: 82 Copynumber: 8.5 Consensus size: 82
91797 TTCGTTCGGA
*
91807 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCCGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
91872 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
91889 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
91954 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
91971 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
92036 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
92053 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
92118 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
92135 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
92200 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
92217 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
92282 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
92299 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
92364 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
92381 CCCTATCGG---TCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
92443 CCTTCGGACCAACTCCT
66 CCTTCGGACCAACTCCT
92460 CCCTATCGG---TCGGAGTTGCCCTCCTATCGGAGGGCC
1 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCC
92496 CTTGGGGGCA
Statistics
Matches: 606, Mismatches: 1, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
79 106 0.17
82 500 0.83
ACGTcount: A:0.15, C:0.36, G:0.24, T:0.25
Consensus pattern (82 bp):
CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGT
CCTTCGGACCAACTCCT
Left flanking sequence: Indices 91307 -- 91806
CATACGAAACGGGAAGTAGTGCGTGCACCCACATAAGATCTCATTCTCGCTACTCATGGCTCTGA
AACAGCAACTCCACGAGAGGAAAAGCAGGTTTAAGGTACTGCTTCGGGCAATCGATACAGACACG
TTTACGCTTAGGCAAATGCTCGTGCGCCGGGTCCGAGCGAAGCGAGGACAACTCCGACCGAAGGG
TCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGCTTTAGAACTTCC
CCGCTGCTATAGCTATGGGCTGGCCTAACCTTTCTAAGGTTAAGCTATTAATTTATCATTGGTCA
ATAATGTCACGGTTCCACTATCGAGTGACTAATGCAGCTAAGCTCCTTTCTTTCCGTCCTGGTAC
CTGGCTGAAACCCTCGGAACAACCCAACTCCCCCCACTCCTCCCGGTAGGTCGGAGTTGTCCTCA
CTTCGTTCGGACCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Right flanking sequence: Indices 92496 -- 92995
CTTGGGGGCACTTTTAAAGGCCCACATTTTTCAAACTTTTCGCCCAAAAAGTAAGTTACTTTAAT
TTAATTTAATTTAAAATTAAGTTACTTGTCTTTGTGGTCACACAACCGCTCGCCCCTTAAAATTA
GGCTCTCTGTGCAAAGACGAGCGAAACTATCCCGTTTGCGGTCACGGAGACTTCTGTAGCTACTA
TTCCGCCCTCTTCTAAACAAAAGGAGAAGGGTGCTGCCGGCAGGCCGGCCTTTTTATTAGCTCTA
GCTCCCACACCGGCAGAGCTGCGACCGGACCAACCGACCATAAGACCTTCTCCAACCCAGCCACG
CACGTATGACCCAAGATTCAGACCGAAAACAGGTTTGTGGTCACACAACACACACACACGTACCC
CCACGCGCCCCCTCAAGAAGGAGGACCACACAGCGCCACAGTTCGGAAGGGTTCTGCCAGCAGGG
AGAATAAGAGCCGCCCGACCACCTAGTTCCCAGACGACCTACGGG
Found at i:92445 original size:22 final size:22
Alignment explanation
Indices: 92377--92445 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 22
92367 TCGGACCAAC
92377 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
* ** *****
92399 CCCT-CCTATCGGAGGGCCAAC
1 TCCTCCCTATCGGTCGGAGTTG
92420 TCCTCCCTATCGGTCGGAGTTG
1 TCCTCCCTATCGGTCGGAGTTG
92442 TCCT
1 TCCT
92446 TCGGACCAAC
Statistics
Matches: 30, Mismatches: 16, Indels: 2
0.62 0.33 0.04
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.12, C:0.36, G:0.25, T:0.28
Consensus pattern (22 bp):
TCCTCCCTATCGGTCGGAGTTG
Left flanking sequence: Indices 91877 -- 92376
GGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATC
GGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGG
GCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGT
TGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCC
CTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCC
TTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCT
ATCGGTCGGAGTTGTCCTTCGGACCAACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGG
AGGGCCAACTCCTCCCTATCGGTCGGAGTTGTCCTTCGGACCAAC
Right flanking sequence: Indices 92446 -- 92945
TCGGACCAACTCCTCCCTATCGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTTGGGGGCACTTTT
AAAGGCCCACATTTTTCAAACTTTTCGCCCAAAAAGTAAGTTACTTTAATTTAATTTAATTTAAA
ATTAAGTTACTTGTCTTTGTGGTCACACAACCGCTCGCCCCTTAAAATTAGGCTCTCTGTGCAAA
GACGAGCGAAACTATCCCGTTTGCGGTCACGGAGACTTCTGTAGCTACTATTCCGCCCTCTTCTA
AACAAAAGGAGAAGGGTGCTGCCGGCAGGCCGGCCTTTTTATTAGCTCTAGCTCCCACACCGGCA
GAGCTGCGACCGGACCAACCGACCATAAGACCTTCTCCAACCCAGCCACGCACGTATGACCCAAG
ATTCAGACCGAAAACAGGTTTGTGGTCACACAACACACACACACGTACCCCCACGCGCCCCCTCA
AGAAGGAGGACCACACAGCGCCACAGTTCGGAAGGGTTCTGCCAG
Found at i:94190 original size:44 final size:44
Alignment explanation
Indices: 94151--94289 Score: 278
Period size: 44 Copynumber: 3.2 Consensus size: 44
94141 ATTAAAGCAA
94151 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
1 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
94195 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
1 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
94239 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
1 CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
94283 CTTTGAA
1 CTTTGAA
94290 AAGGTTGCCA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 95 1.00
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (44 bp):
CTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
Left flanking sequence: Indices 93651 -- 94150
ATCTTTTCTAATATGGGCGCTAAGGTAAAGTTGCTTTAATTCTAAATTAAATTAAATTAAAGGTT
CTTTCGCATTAGAGCAAACACCCTTGAATATCGACACAGAATAGATAACTCAGTGAACCCATGTA
CTCGACCAATTCGCGGAAATACCTTCTCTTACGTCTCTTCTACGCTTTAGCTTCAACTCCTGTCC
TATCCGATGAAACTATCATCGAAAGACTTACCAGCGCCTTTAAATGTCGGCACTTACCAGCGGTG
GAAGAAGGTGATTTTATTCTGCAAAGGATTGGTGTCTGGAATACTAGTGCAAGCAAACATAGTTA
TCGCAGAATTTTGCAGAATATATTTCCCGAGTTCGGGGGAGCGGCTCTTCAAGTGGTCTCCCGCA
AGAGTTGGAATTCAGTATCTAAGCTTCTAATGACCAAAGGTGCAGTTTTCGTTGGGGAAGACGGT
GCCGGTAAAGAACCTTTATTTTAATTTAATTTAGAATTAAAGCAA
Right flanking sequence: Indices 94290 -- 94789
AAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGCAGGTTCAAAGAACCT
TTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCGCAGTGGATTCATCAG
TAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAACTTGGAGATTCAAAGG
CTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGCTCTGCTCAAAGTGGG
GGAAGCTGAGAACTCTCGGCTGCAGGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAG
TGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAA
CGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGT
CCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGTGGGAGG
Found at i:94640 original size:35 final size:35
Alignment explanation
Indices: 94583--94771 Score: 342
Period size: 35 Copynumber: 5.4 Consensus size: 35
94573 AGGGTCCTAC
* * **
94583 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
94618 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
94653 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
94688 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
94723 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
94758 GGACCACTCCGACC
1 GGACCACTCCGACC
94772 GAAGGGAGGA
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 150 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 94083 -- 94582
CAGTTTTCGTTGGGGAAGACGGTGCCGGTAAAGAACCTTTATTTTAATTTAATTTAGAATTAAAG
CAACTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAAAGGTTCTTTGAAGGCTGCTTTAA
TTCTAAATTAAATTAAATTAAAGGTTCTTTGAAGGCTGCTTTAATTCTAAATTAAATTAAATTAA
AGGTTCTTTGAAAAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGCAGG
TTCAAAGAACCTTTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCGCAG
TGGATTCATCAGTAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAACTTG
GAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGCTCT
GCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTGCAGGGTCCTAC
Right flanking sequence: Indices 94772 -- 95271
GAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGGAGTGGGAGGAGTTGGTCCTACGGACAAC
TCCGACCGATAGGGAGGAGTTGGTCCGATAGGACAACTCCGACCGTAAGAACCTTTCATTTTCAA
TGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAAATTAAATTAAAGTAACCGCT
TTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAGAAGGAACGGGAAGAAGCGCA
GTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGCTTTGCCCTAGCTAATAATCT
TGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAGCCCTTTTTTTCTTGAAAAGT
GTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGTAAAGTTGCCGGAAACC
TAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGA
Found at i:94787 original size:9 final size:9
Alignment explanation
Indices: 94775--94820 Score: 74
Period size: 9 Copynumber: 5.0 Consensus size: 9
94765 TCCGACCGAA
94775 GGGAGGAGT
1 GGGAGGAGT
94784 GGGAGGAGT
1 GGGAGGAGT
94793 GGGAGGAGT
1 GGGAGGAGT
*
94802 GGGGGGGAGT
1 -GGGAGGAGT
94812 GGGAGGAGT
1 GGGAGGAGT
94821 TGGTCCTACG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
9 26 0.76
10 8 0.24
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 94275 -- 94774
TAAAGGTTCTTTGAAAAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGC
AGGTTCAAAGAACCTTTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCG
CAGTGGATTCATCAGTAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAAC
TTGGAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGC
TCTGCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTGCAGGGTCCTACGGACAACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 94821 -- 95320
TGGTCCTACGGACAACTCCGACCGATAGGGAGGAGTTGGTCCGATAGGACAACTCCGACCGTAAG
AACCTTTCATTTTCAATGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAAATTA
AATTAAAGTAACCGCTTTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAGAAGG
AACGGGAAGAAGCGCAGTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGCTTTG
CCCTAGCTAATAATCTTGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAGCCCT
TTTTTTCTTGAAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGT
AAAGTTGCCGGAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGAACAG
GTAGTTGAAAAGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCG
Found at i:94812 original size:19 final size:18
Alignment explanation
Indices: 94775--94820 Score: 74
Period size: 19 Copynumber: 2.5 Consensus size: 18
94765 TCCGACCGAA
94775 GGGAGGAGTGGGAGGAGT
1 GGGAGGAGTGGGAGGAGT
*
94793 GGGAGGAGTGGGGGGGAGT
1 GGGAGGAGT-GGGAGGAGT
94812 GGGAGGAGT
1 GGGAGGAGT
94821 TGGTCCTACG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.11
Consensus pattern (18 bp):
GGGAGGAGTGGGAGGAGT
Left flanking sequence: Indices 94275 -- 94774
TAAAGGTTCTTTGAAAAGGTTGCCACGCGAAAAGGCAAACGAGGGTATAAAAACTTTCCGGAGGC
AGGTTCAAAGAACCTTTAATTTAATTTAATTTAGAATTAAAGCAACCCTTTTAAAGGCGCTCCCG
CAGTGGATTCATCAGTAGCAGATGCTGAGCCTTCTAGGCTCACGGCTCTGCTGGAAGAAAAAAAC
TTGGAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGAAGGACTTGGAAATAGCTAGAATAGGGGC
TCTGCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTGCAGGGTCCTACGGACAACTCCGACCGAT
AGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGA
CCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 94821 -- 95320
TGGTCCTACGGACAACTCCGACCGATAGGGAGGAGTTGGTCCGATAGGACAACTCCGACCGTAAG
AACCTTTCATTTTCAATGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAAATTA
AATTAAAGTAACCGCTTTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAGAAGG
AACGGGAAGAAGCGCAGTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGCTTTG
CCCTAGCTAATAATCTTGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAGCCCT
TTTTTTCTTGAAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGT
AAAGTTGCCGGAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGAACAG
GTAGTTGAAAAGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCG
Found at i:94880 original size:37 final size:36
Alignment explanation
Indices: 94812--94881 Score: 115
Period size: 36 Copynumber: 1.9 Consensus size: 36
94802 GGGGGGGAGT
94812 GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
1 GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
94848 GGGAGGAGTTGGTCCGATA-GGACAACTCCGACCG
1 GGGAGGAGTTGGTCC--TACGGACAACTCCGACCG
94882 TAAGAACCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
36 15 0.47
37 15 0.47
38 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.16
Consensus pattern (36 bp):
GGGAGGAGTTGGTCCTACGGACAACTCCGACCGATA
Left flanking sequence: Indices 94312 -- 94811
AACGAGGGTATAAAAACTTTCCGGAGGCAGGTTCAAAGAACCTTTAATTTAATTTAATTTAGAAT
TAAAGCAACCCTTTTAAAGGCGCTCCCGCAGTGGATTCATCAGTAGCAGATGCTGAGCCTTCTAG
GCTCACGGCTCTGCTGGAAGAAAAAAACTTGGAGATTCAAAGGCTCACGGCTCTGCTGGGAGAGA
AGGACTTGGAAATAGCTAGAATAGGGGCTCTGCTCAAAGTGGGGGAAGCTGAGAACTCTCGGCTG
CAGGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCGAAGGGAGGAGTGGGAGGAGTGGGAGGAGTGGGGGGGAGT
Right flanking sequence: Indices 94882 -- 95381
TAAGAACCTTTCATTTTCAATGAAATTAAATTAAAGTAACCTCAGTTACTTTCATTTTCAATGAA
ATTAAATTAAAGTAACCGCTTTAAAGAGGAGTTGGTCTTTTGAAGTTCTAGGAGCATTCTCAGAG
AAGGAACGGGAAGAAGCGCAGTTGGATCACCAACAAACGGCTTTACGGAACGCGCAGCAACAGGC
TTTGCCCTAGCTAATAATCTTGAAAGAGGAGACAGCCAATCAACCAAAAAGGAACCTTACATCAG
CCCTTTTTTTCTTGAAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGA
AAGTAAAGTTGCCGGAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGA
ACAGGTAGTTGAAAAGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCGCTACCCGCCCGGGTCC
GCACCCCCCAGGCCCCTTATTAGAGGTTGATTGGTATTACAGCTT
Found at i:95713 original size:35 final size:35
Alignment explanation
Indices: 95656--95745 Score: 137
Period size: 35 Copynumber: 2.6 Consensus size: 35
95646 AGGGTCCTAC
* *
95656 GGACAACTCCGACCGATAGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCGACAGGGTCCGAACGAAGTGA
* *
95691 GGACCACTCCGACCTACCGGGTCCGAACGAAGTGA
1 GGACCACTCCGACCGACAGGGTCCGAACGAAGTGA
95726 GGACCACTCCGACCGA-AGGG
1 GGACCACTCCGACCGACAGGG
95746 AGGAGTGGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
34 3 0.06
35 46 0.94
ACGTcount: A:0.28, C:0.31, G:0.31, T:0.10
Consensus pattern (35 bp):
GGACCACTCCGACCGACAGGGTCCGAACGAAGTGA
Left flanking sequence: Indices 95156 -- 95655
AAAAGTGTCGAATGAATTCAAAACGGACCTTTAATTCGCACCATTTAAAGAAAGTAAAGTTGCCG
GAAACCTAATGAATTAGTCAGGGTGGGATTTGCTTGAGATCCGGAAACAGAACAGGTAGTTGAAA
AGAAAGAATGGGGCCTTTAAAAGTAGCGCTACGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCC
CCTTATTAGAGGTTGATTGGTATTACAGCTTTTTAAAAGGCCGCTACACAAAATGTTGAAAGAGT
TGAGCGCTTTTAAAAGGCGTAACTATCGTAGAGTCGGGAAGAATGATCACTATGTTGCTGCGCAC
TCCCGAAGAAAATGCTAGGAGTTCGAAAATGAGGAGGGAGCATGGAGCCATTGAGACTGTGGTTG
ATGGCATCTACGAAGTAGATTGGAGTCAAAAGCTGAGAAACATCCGGTAGGGTGGCCACAAGAAC
TGTACTTCGGCTGCTTCCTATCCTCATTCGTCCCCAGGGTCCTAC
Right flanking sequence: Indices 95746 -- 96245
AGGAGTGGGAGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTGGGGGGAGTGGGAGGAGTTGGTC
CGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCCTATCG
GTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGGTTGCTCCGAAAGAGCAATCGAG
AGGGAGGTGCGGGCCTGGGGCTCCGGGGTAGTAACTTCGGAGGGTTTTGACGGAAAGTTTTCTCT
AGAATTCTGCTGTAGGTGGGGGAGACGCTTAGAGGGGAAAACGTCGTTAGAGCCCCTGTTTTAGG
CGAGTGAAAAATCCGCCATACTGGCTAATCCCCTGCCTGAGGACCAGGTCTCGGCTTATCAATTG
GGGAAAATGCAGCTTCTGAGTGATGTACCCCACGTTTCTTCCCACCAATCCAGAAATCTCGAGTG
TTGTCGCACGCTTCAGGGGGTGTCGTCCTATTTCCCACCACCGGC
Found at i:95755 original size:9 final size:9
Alignment explanation
Indices: 95743--95805 Score: 108
Period size: 9 Copynumber: 7.0 Consensus size: 9
95733 TCCGACCGAA
95743 GGGAGGAGT
1 GGGAGGAGT
95752 GGGAGGAGT
1 GGGAGGAGT
95761 GGGAGGAGT
1 GGGAGGAGT
*
95770 GGGGGGAGT
1 GGGAGGAGT
95779 GGGAGGAGT
1 GGGAGGAGT
*
95788 GGGGGGAGT
1 GGGAGGAGT
95797 GGGAGGAGT
1 GGGAGGAGT
95806 TGGTCCGCAG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.19, C:0.00, G:0.70, T:0.11
Consensus pattern (9 bp):
GGGAGGAGT
Left flanking sequence: Indices 95243 -- 95742
GTGGGATTTGCTTGAGATCCGGAAACAGAACAGGTAGTTGAAAAGAAAGAATGGGGCCTTTAAAA
GTAGCGCTACGCGCTACCCGCCCGGGTCCGCACCCCCCAGGCCCCTTATTAGAGGTTGATTGGTA
TTACAGCTTTTTAAAAGGCCGCTACACAAAATGTTGAAAGAGTTGAGCGCTTTTAAAAGGCGTAA
CTATCGTAGAGTCGGGAAGAATGATCACTATGTTGCTGCGCACTCCCGAAGAAAATGCTAGGAGT
TCGAAAATGAGGAGGGAGCATGGAGCCATTGAGACTGTGGTTGATGGCATCTACGAAGTAGATTG
GAGTCAAAAGCTGAGAAACATCCGGTAGGGTGGCCACAAGAACTGTACTTCGGCTGCTTCCTATC
CTCATTCGTCCCCAGGGTCCTACGGACAACTCCGACCGATAGGGTCCGAACGAAGTGAGGACCAC
TCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCGAA
Right flanking sequence: Indices 95806 -- 96305
TGGTCCGCAGGACCACTCCGACCGATAGGGTCCGAACGAAGTGAGGACAACTCCGACCCTCTCCC
TATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGGAGGAGTTGGGTTGCTCCGAAAGAGCAA
TCGAGAGGGAGGTGCGGGCCTGGGGCTCCGGGGTAGTAACTTCGGAGGGTTTTGACGGAAAGTTT
TCTCTAGAATTCTGCTGTAGGTGGGGGAGACGCTTAGAGGGGAAAACGTCGTTAGAGCCCCTGTT
TTAGGCGAGTGAAAAATCCGCCATACTGGCTAATCCCCTGCCTGAGGACCAGGTCTCGGCTTATC
AATTGGGGAAAATGCAGCTTCTGAGTGATGTACCCCACGTTTCTTCCCACCAATCCAGAAATCTC
GAGTGTTGTCGCACGCTTCAGGGGGTGTCGTCCTATTTCCCACCACCGGCCCCACCCGGGCAGGA
TTCAGTGACAGCGTATGGGCACCCTGCGTAGCTCTTGCTTCCTCC
Found at i:96648 original size:43 final size:40
Alignment explanation
Indices: 96559--96675 Score: 168
Period size: 43 Copynumber: 2.9 Consensus size: 40
96549 ATTAGCCTAA
*
96559 GGTTACTTTAATTTAATTTCATTGAAAATTAAA-G--TGG
1 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTTAG
96596 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTACTTAG
1 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGG-T--TTAG
*
96639 GTTTACTTTAATTTAATTTCATTGAAAATTAAAGGTT
1 GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTT
96676 GGGCGACCTA
Statistics
Matches: 72, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
37 33 0.46
38 1 0.01
40 1 0.01
42 1 0.01
43 36 0.50
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (40 bp):
GGTTACTTTAATTTAATTTCATTGAAAATTAAAGGTTTAG
Left flanking sequence: Indices 96059 -- 96558
CCCTGTTTTAGGCGAGTGAAAAATCCGCCATACTGGCTAATCCCCTGCCTGAGGACCAGGTCTCG
GCTTATCAATTGGGGAAAATGCAGCTTCTGAGTGATGTACCCCACGTTTCTTCCCACCAATCCAG
AAATCTCGAGTGTTGTCGCACGCTTCAGGGGGTGTCGTCCTATTTCCCACCACCGGCCCCACCCG
GGCAGGATTCAGTGACAGCGTATGGGCACCCTGCGTAGCTCTTGCTTCCTCCAGCTACGCTCCCA
ATGAGTGGCCTGCCTTTGACCTTTCTAGGTCGCGTAGCTGCCTTTCGTCACACACATTGTCCCGC
TTCCGACACTTACTAATCTGCGACTTTTACTAATCTGCCGACAGATAGACGACTTTTACTAATGT
GCCTGATCTGCCGTGACTTAGCGCCCATATTAGCCAAGTAGCGCCCTATCTTAGCGGATTAGCCC
TTTTAAAAGGGCGACCTACCTCATTCTGTTGTTTTATTAGCCTAA
Right flanking sequence: Indices 96676 -- 97175
GGGCGACCTACCTTAAATTCAATGAATTTTCAATTAATTGAAAATTAGTGGAATTCCCGATTCTT
TACTTTAGCGGCCGAATCAGCCGAATAAGCCGATGTCGAATCAGCTGCCGGAATCCATGCCTTAA
AAGGGCTCTAGCAGGCCTCTCCTACGGCATTGAGAGAAGAGGGATAGCGGTGAGGACCAGTCCTT
GAGTCAGTATGACCTCTGGCTCAAGGACTGGCCCCAGCCCCACCATCCATAAAGTTGGGTGGTGA
GCGCTACGCGCCACTTAGTGGGTGGGGGACCTTTAAAGTGCTCTCTTTCTCCCCTACTAGAGCGG
GTTGTTTCGGGGGGAAGGGCGGGGCCGAAACGCGCTGCCCTCAACCTCCCAAAGGTCGGTTGAGT
GTCCTTTGACCGCCCTACCCTCGTCATCGGCTGACTCAGCCACTATGCGGACTCAGCAACGGCTG
ATTCGGCCACGTAGCGGGCTCGGCATCGGACTCGACAACGGCTGC
Found at i:97180 original size:18 final size:19
Alignment explanation
Indices: 97159--97196 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
97149 CTCGGCATCG
*
97159 GACTCGACA-ACGGCTGCA
1 GACTCGACATACGGCAGCA
97177 GACTCGACATACGGCAGCA
1 GACTCGACATACGGCAGCA
97196 G
1 G
97197 CGGCTACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.32, G:0.29, T:0.11
Consensus pattern (19 bp):
GACTCGACATACGGCAGCA
Left flanking sequence: Indices 96659 -- 97158
ATTGAAAATTAAAGGTTGGGCGACCTACCTTAAATTCAATGAATTTTCAATTAATTGAAAATTAG
TGGAATTCCCGATTCTTTACTTTAGCGGCCGAATCAGCCGAATAAGCCGATGTCGAATCAGCTGC
CGGAATCCATGCCTTAAAAGGGCTCTAGCAGGCCTCTCCTACGGCATTGAGAGAAGAGGGATAGC
GGTGAGGACCAGTCCTTGAGTCAGTATGACCTCTGGCTCAAGGACTGGCCCCAGCCCCACCATCC
ATAAAGTTGGGTGGTGAGCGCTACGCGCCACTTAGTGGGTGGGGGACCTTTAAAGTGCTCTCTTT
CTCCCCTACTAGAGCGGGTTGTTTCGGGGGGAAGGGCGGGGCCGAAACGCGCTGCCCTCAACCTC
CCAAAGGTCGGTTGAGTGTCCTTTGACCGCCCTACCCTCGTCATCGGCTGACTCAGCCACTATGC
GGACTCAGCAACGGCTGATTCGGCCACGTAGCGGGCTCGGCATCG
Right flanking sequence: Indices 97197 -- 97696
CGGCTACTTCGATTTGGAGTCTGGAGGTGGGGGCGGCACTCGCACAGAGAATGCGCTAAGCGGCG
GGGCCGGGCTACGGGGAGGATGCATAAGCCCGCCCCCGCTATCCCCGCCGAAGGGGAAGGGCTAA
GCTTCTACATACCTGATTTCGCGATCTCACCATTCGGAGCCCTTCCCAGTTTCAGTTTCTCCAGT
TCGCTACGCGTTTCCCTTTCTTTAGATGAGTATTTTCCGACCCTTCCTAATGCTCTCTCTATCGT
TTGATTGTCGTGAGGCTAAAGGGACCGGTATAGGGGATTGATGAAGTTGTATAATAAGCTCAAGT
TCTCCAGGCCCTTCCTAGACCTTATATGACACCTAATAATAACCTCTCAATGTACTATAAGGTCC
TCTTAGTCAGGGGCGGGCTTGATCCAAAAGATTTCCGGATTCTCCGAGGACCGGATCTTTGCAGC
CTAGAATCCGTAACAAAAAACGGGATTCTGAGAGAGAGAGAGGTG
Found at i:98246 original size:33 final size:33
Alignment explanation
Indices: 98204--98266 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
98194 GCCTTTTTAA
98204 AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
1 AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
98237 AAGGGTCCGAGCGAAGCGAGGACAACTCCG
1 AAGGGTCCGAGCGAAGCGAGGACAACTCCG
98267 ACCCTCTCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.29, G:0.37, T:0.06
Consensus pattern (33 bp):
AAGGGTCCGAGCGAAGCGAGGACAACTCCGCCG
Left flanking sequence: Indices 97704 -- 98203
TTCCGGCCGGATTCTCCGGTAATATAGGAGTTTCAAACCTTCGCCCCAGCAGCAGAAGCAGCAGT
AGCCCAAGTAGTTCCAGTTCCAGTTCCAGTCCCAGTTTCAGCAGTCCCAGCAGCCGTTGCCCCAG
GAGCAGTTGAAGGGGCAGTTGAACGCGAATCAGTTTCAATTGAATCAATTGACTCAGTCGCGGAC
CTTTAAAGGCTGACTCAGTAGCCCTTTCGGATTACTAGGGAAAGGGAAAGGTGGGAAGGTTCGAG
AATTCTGGGGGAGTGTTTAATTGAAAATTAAAGTAATAAGATTACTTTAATTTAATTTAAGACAA
TTTTGCTGCTTTTCTGGCCTAACGCGCTTCTAGGGTCCGAACGAAGTGAGGACCACTCCGACCGA
AGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGAAAACCAGCGCTAAAAGTACTTTA
AAGTACTAGGGAGCTTTAAACACTTTTAACTGCCGGCCTTTTTAA
Right flanking sequence: Indices 98267 -- 98766
ACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGGACAACTCCGA
CCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATTTGAATTCCGGAAATTCAATGAATTTC
AATTAATTTTAAAATACATGACTTTAAAGAAAGAAAGAGTTGGAACGGCTTTATCGCTCCTTCCT
CTCAACAACTGCTTCATCGGCAACTTAGGCTACGGCTACGGCAACAGCGGAAACAGCTTATTGCC
TCTTCTTCCTTTCTAGGAAAGCTTCCCCTTCCTGGCCTTCTCCTTCGCTACGCGCCTCTCCTCCT
TCCCTTTCGCTACGTGTCTCTCTTCCTTCTTCTTCGCTACGCGCCTCTTTTCGCCTTTGCTCCTC
TTTCGCTCCTACCCTTAGCCAGTTCCCTTTGCGGGCGCCAGCCTCGAATGGTCTTTCTCTGAAGA
AAAAAGGCTAACTGAGCGAGGCGTAGCACCTGTTTGACCATTCCG
Found at i:98592 original size:27 final size:27
Alignment explanation
Indices: 98562--98639 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
98552 CCCTTCCTGG
98562 CCTTCTCCTTCGCTACGCGCCTCTCCT
1 CCTTCTCCTTCGCTACGCGCCTCTCCT
* * *
98589 CCTTC-CCTTTCGCTACGTGTCTCTCTT
1 CCTTCTCC-TTCGCTACGCGCCTCTCCT
*
98616 CCTTCTTCTTCGCTACGCGCCTCT
1 CCTTCTCCTTCGCTACGCGCCTCT
98640 TTTCGCCTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.04, C:0.46, G:0.12, T:0.38
Consensus pattern (27 bp):
CCTTCTCCTTCGCTACGCGCCTCTCCT
Left flanking sequence: Indices 98062 -- 98561
GGTCCGAACGAAGTGAGGACCACTCCGACCGAAGGGAGGAGGGGAGTTGGCCCTTTAAAGGAGCG
CCGTCGCGAAAACCAGCGCTAAAAGTACTTTAAAGTACTAGGGAGCTTTAAACACTTTTAACTGC
CGGCCTTTTTAAAAGGGTCCGAGCGAAGCGAGGACAACTCCGCCGAAGGGTCCGAGCGAAGCGAG
GACAACTCCGACCCTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGTCCGAACGAAGTGAGG
ACAACTCCGACCGAAGGGAGGAGTTGGAGGAGTTGGGGGACAACAAATTTGAATTCCGGAAATTC
AATGAATTTCAATTAATTTTAAAATACATGACTTTAAAGAAAGAAAGAGTTGGAACGGCTTTATC
GCTCCTTCCTCTCAACAACTGCTTCATCGGCAACTTAGGCTACGGCTACGGCAACAGCGGAAACA
GCTTATTGCCTCTTCTTCCTTTCTAGGAAAGCTTCCCCTTCCTGG
Right flanking sequence: Indices 98640 -- 99139
TTTCGCCTTTGCTCCTCTTTCGCTCCTACCCTTAGCCAGTTCCCTTTGCGGGCGCCAGCCTCGAA
TGGTCTTTCTCTGAAGAAAAAAGGCTAACTGAGCGAGGCGTAGCACCTGTTTGACCATTCCGCAG
TGCAAGTGGCCCAGCAAAGCTCAGAGCGCGTAGAATGCCGTTAGTTATGCATCCGCCGTTAGTTA
TGCATGTTCCGCAATCTATTCGGAAAAGAGGGGGCTGAAGAGGAAGCGCATGGCGGAAGAGAAGA
AGAGGCTAAGCTGTAGTCGAGGCGAAGAGGAAGAAGCGCGCAGTCGTGGCCGGGAGGAAGAGGCT
TCTTTCCGAAAGGATTCGGCGCGTGAATAGGGAGAGGCGCGTAGCAGAGAAGAAGAGGCGATATT
TCGTTTCCGCGCAGTCATTATGAGAGGAACGAAAGAAAGCATCATCGCGTTGTTGAATCCTTGAT
CATTACAGGAACGAAAGAGAGCATCGTCGCCCGGGAAGGAACAGA
Found at i:100415 original size:46 final size:46
Alignment explanation
Indices: 100348--100485 Score: 276
Period size: 46 Copynumber: 3.0 Consensus size: 46
100338 TCTAGGTCTA
100348 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
100394 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
100440 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
1 GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
100486 TGGTTAAGGC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 92 1.00
ACGTcount: A:0.24, C:0.26, G:0.37, T:0.13
Consensus pattern (46 bp):
GGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGT
Left flanking sequence: Indices 99848 -- 100347
ACCACACCGGACTACCCATTCCCATTATTATGCTATTCAAAATATCATACCAATACGTGTTTTTA
AGTCCCGATCGATACTCGCGGAGTTGATTATCCCTCTCGAGAATGAAGATTTGAAGTAGTTTATA
ATTCATCAAGTATTTAGTACAACTCATGCCTTCGTGTATAGACCGGTGTAGACGAAACCACTTCC
GCCAGTTCGGTAGTAAGTCTATTTCCATCGGCCGGCTGGTGGGAGCGGGAAGTCTGGGATATGTT
TGGTGTTTCTTCCTCCAATCATCCCGATTCACGCCGTACATCAACAGACTATGGGTTTGAGGGTC
ATCCATTACGAAAAGACTTTCCTTTGAGTGGATATGTGGAAGTACGTTATGATGATTCAGAAAAA
CGTGTGGTTTCTGAACCGATGGAGATGACTCAAGAATTTCGTTCTTTCGATTTTTCTAGTCCTTG
GGAACCAATGCCGCGTAGTGACAATCCCTGTAAAGTCTAGGTCTA
Right flanking sequence: Indices 100486 -- 100985
TGGTTAAGGCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGT
GGGGGCATCTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTT
CTGCTTGCTCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGC
TACTGGTTAGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCC
GGGCGCGTTTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCATGGCCGACTCTCTC
TCCCTACCGAAACTGCATGTGGAAACTGCGAAGTGGAACCGAACGTCCTTGGTGACCTATGAATG
TCCCCAATTGTGGTAGGTCGACAAACAAACAAGTCAAGCCCATTTGCCGGTGAGAGAGCGAGTCC
GCCTGGGAGGAGAGTGAGTCCGCCTGGGTGAGAGTGAGTCCGCCT
Found at i:100975 original size:20 final size:21
Alignment explanation
Indices: 100929--100986 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
100919 TTGCCGGTGA
*
100929 GAGAGCGAGTCCGCCTGGGAG
1 GAGAGTGAGTCCGCCTGGGAG
*
100950 GAGAGTGAGTCCGCCTGGG-T
1 GAGAGTGAGTCCGCCTGGGAG
100970 GAGAGTGAGTCCGCCTG
1 GAGAGTGAGTCCGCCTG
100987 AAAAGGCGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.16
Consensus pattern (21 bp):
GAGAGTGAGTCCGCCTGGGAG
Left flanking sequence: Indices 100429 -- 100928
GAGGGAGGAGTGGGTCCTCCGACAGGAGGACCACTCCGAATTCCGAGAGGGAGGAGTTGGTTAAG
GCCCTTCCCTTCCCGGTTTCCTTCCCGTGTGAGGATTCGATTCCCCCGAGTAGTGGTGGGGGCAT
CTATCTACGTGTTTTTGCACCTCAAAAACACGTAGATAGAAGAAGACACCGAGATTTCTGCTTGC
TCCGAGTGGTCGAGGGTGTCGAAAACTATCGCCCCTTACCCCACAGAGCTTGAGTGCTACTGGTT
AGCTGCCACTGCCGGTAGCCAGCCTCGAAAGAAGCTCCTCGCCACTTTAAAGTCGCCGGGCGCGT
TTCCTCCTTTTCCAGGTATAGGGGTGGTCTGTTCGAAAATCCATGGCCGACTCTCTCTCCCTACC
GAAACTGCATGTGGAAACTGCGAAGTGGAACCGAACGTCCTTGGTGACCTATGAATGTCCCCAAT
TGTGGTAGGTCGACAAACAAACAAGTCAAGCCCATTTGCCGGTGA
Right flanking sequence: Indices 100987 -- 101486
AAAAGGCGTCAACACCGGCGATTCAACTTCATTCGCGCTCCGAAGGGCCGATTGCCGCACCTTTT
AAAGGCCTATCGTCAATGGAAACATGGCCTGTTTCAGGTGGCAGCCTCCCTTCGCCCCTTCTCGT
AGCATCCGCAAACCTTTGCTCTACCTTCCCGGCAAGCGGGAGCAGCAATTCAAGGGAAAGTGGAA
GCAGCGATTGGTGGGTCCTTTCTGTTCGGTAAAAGCTATTTGGTTTCCCGGCTTTGCGGAAGGCA
AAGATTCCTTCCTTTGCGGAAGCTGCGACCTGCTTTGTGGGGAAGCATTTAAGTGCCGCTCCTTC
GCATCTGCAGAATTTGCTCTCCAACTCCTCCAACTCCTCCCTTCGGTCGGAGTTGTCCTCACTTC
GTTCGGACCCTATCGGTCGGAGTGGTCCTTCGGACTTTAAAGGGCCCACCTCCCCTTGAAGGGAA
AGTAAGACATGAGTGCCGCCTAGTCGCGATATCCTCCCCGGGGGC
Found at i:103710 original size:43 final size:41
Alignment explanation
Indices: 103616--103716 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 41
103606 ATTCCAGCGA
* *
103616 AGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATAGG
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTCC-A-AGG
*
103659 AGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCC-AGG
1 AGGACCACTCCGACCGATAGGGAGGAGTTGGCACT-CCAAGG
103700 TCAGGACCACTCCGACC
1 --AGGACCACTCCGACC
103717 TACCGGGTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
41 3 0.06
43 46 0.90
44 2 0.04
ACGTcount: A:0.24, C:0.30, G:0.34, T:0.13
Consensus pattern (41 bp):
AGGACCACTCCGACCGATAGGGAGGAGTTGGCACTCCAAGG
Left flanking sequence: Indices 103116 -- 103615
CCTTTTGCTTAGACTAGTCACCTAGGTTATCCAGCCTCCCCCGCTCTGGACAGTCAAAATAGAAC
TTCGTAGCATTAGGAAGGAGCTCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTAC
GTACACCTCCCCATACCCACTAGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAA
TAGCACTACGCGCTTTCCCACGGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATA
CGCGCTAATGGAATCGAATCCATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCT
AGTTCCCCCAACCCTTCAGGGTCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGC
GTCTAGGCGAAAGGGGTAGGGGGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCG
CCTTCTTTCTGGCTGTTTCTGTCCAAGAAAAACGGATTCCAGCGA
Right flanking sequence: Indices 103717 -- 104216
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTC
CGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGAC
CACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
AGGACCACTCCGACCTACCGGGTCAGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACG
AAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
GAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCG
GGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCCGAACGAAGTGAGGACCACTCCGACC
TACCGGGTCCGAACGAAGTGAGGACCACTCCGACCTACCGGGTCC
Found at i:103748 original size:35 final size:35
Alignment explanation
Indices: 103702--104442 Score: 1473
Period size: 35 Copynumber: 21.2 Consensus size: 35
103692 CTGCCAGGTC
103702 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103737 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103772 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103807 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103842 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103877 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
*
103912 AGGACCACTCCGACCTACCGGGTCAGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103947 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
103982 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104017 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104052 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104087 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104122 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104157 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104192 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104227 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104262 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104297 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104332 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104367 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104402 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
1 AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
104437 AGGACC
1 AGGACC
104443 CTATCGGTCG
Statistics
Matches: 704, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 704 1.00
ACGTcount: A:0.26, C:0.34, G:0.29, T:0.11
Consensus pattern (35 bp):
AGGACCACTCCGACCTACCGGGTCCGAACGAAGTG
Left flanking sequence: Indices 103202 -- 103701
TCCCGTCGGGTAGCCACATAGCGTGTAGTGCCCACCCGCACTACGTACACCTCCCCATACCCACT
AGGTTGGGGCTAGTCACGGGAAGCGCTACGTGCCATACCCATAATAGCACTACGCGCTTTCCCAC
GGGGTACGTGCGGCTAGCGGGGGGTAGTTACGGACGTGGTCATACGCGCTAATGGAATCGAATCC
ATTATTACGTGGTGTGGGGTCTAAGGTCTAGGCTAAGGGTACCTAGTTCCCCCAACCCTTCAGGG
TCATACGCGCTAATGAGGGAATCGAATCCATTAGTGGTCATAGCGTCTAGGCGAAAGGGGTAGGG
GGTGCCGCCAACCAATCTTTGGTGCGGGGGTGGGGGTAGGGCCGCCTTCTTTCTGGCTGTTTCTG
TCCAAGAAAAACGGATTCCAGCGAAGGACAACTCCGACCGATAGGGAGGAGTTGGCCCTCCGATA
GGAGGGCCACTCCGACCGATAGGGAGGAGTTGGCACTGCCAGGTC
Right flanking sequence: Indices 104443 -- 104942
CTATCGGTCGGAGTGGTCCTCCTGTCGGAGGACCCTAGAATGACTAAATTCGCTAGGCAAACGAC
AGGGTGATGCGGGATGCACAGAGCAGCTTACTTTGCGCAAGCTAAGCTAGACGCAGGCACTTCGT
AGTCCGATCACTCTCGCCGCTACCTGCACCTGCTCGCGCTTGTTCCGTTCCTTCCCACCTGCCCC
GCACCACCGAGAGCGCCCACCTAGACTCTTGGCCAAAAAGAATACTTTTCACTCAGGCTTGTCGG
TTCAACCAACCTCGTTAGCCCCCTTAAAAGTCTCGGGTCAAAGCCCTCCCTTCGAAGTGACTTCG
GAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCC
ATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCT
TTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAA
Found at i:105278 original size:10 final size:10
Alignment explanation
Indices: 105263--105320 Score: 53
Period size: 10 Copynumber: 5.2 Consensus size: 10
105253 ATCGTCTAAG
105263 GTCTAAGATC
1 GTCTAAGATC
105273 GTCTAAGGACGAATC
1 GTCT-A--A-GA-TC
105288 GTCTAATGATC
1 GTCTAA-GATC
105299 GTCTAAGATC
1 GTCTAAGATC
*
105309 GTCTAGGATC
1 GTCTAAGATC
105319 GT
1 GT
105321 GATCGTCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
10 19 0.46
11 9 0.22
12 3 0.07
13 1 0.02
14 3 0.07
15 6 0.15
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (10 bp):
GTCTAAGATC
Left flanking sequence: Indices 104763 -- 105262
CTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATT
TACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGT
TTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGC
TCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAG
CCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAG
TTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTC
AAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAA
GGCCTTTAAAAGTCGTATAAGCCTTTAAATGACAAATCGTCTAAG
Right flanking sequence: Indices 105321 -- 105820
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:105308 original size:36 final size:36
Alignment explanation
Indices: 105252--105334 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
105242 TTAAATGACA
105252 AATCGTCTAAG---GTCTAAGATCGTCTAAGGA-CG-
1 AATCGTCTAAGATCGTCTAAGATCGTCT-AGGATCGT
105284 AATCGTCTAATGATCGTCTAAGATCGTCTAGGATCGT
1 AATCGTCTAA-GATCGTCTAAGATCGTCTAGGATCGT
*
105321 GATCGTCTAAGATC
1 AATCGTCTAAGATC
105335 ATCTGATTCC
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
32 10 0.23
33 1 0.02
35 4 0.09
36 20 0.45
37 9 0.20
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (36 bp):
AATCGTCTAAGATCGTCTAAGATCGTCTAGGATCGT
Left flanking sequence: Indices 104752 -- 105251
CTTCGAAGTGACTTCGGAGTCCTAAAGTCCATCGCCCCCACCACTAGTGTTAAACGGAAATCAGT
GAAGCCGGATTTACCCATTGCTAGTCCCAACCAACTGCCCGTTAAACTGAACGAAGTGAAAGGAC
CGGGAGGTAGTTTTCTTTAACTCGAACCGAGTTAAAGAAAACCCACCGAAACAACTTTTAAAGGC
CTTTAAAAGGCTCAGCGCTACGCGCTTCACAGCGCTGGGGTACGGAGCTAATTCTAGCCTTCCCC
AGAGTGAGTAGCCACGTCGGTCCGATTCTGGGTGGCGGGAAAAGGTGGTTTGATCCCGGACATTT
TCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAAAACCGTGCGAAGTCTTTCCATCTATCTACAA
TCCCGGATTTCAAAATGGGAGCTTTGATCGATTTTTCCCGGCCCGGGAAACTATTTGTTTCTCAC
TTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCCTTTAAATGACA
Right flanking sequence: Indices 105335 -- 105834
ATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCGGACGATTCTCCGTA
GAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATGATGGGCTGCCAGTT
CCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGAATTAGTTAGGCACT
GAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCTGAATGGGCACT
GCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAATTGCCGGTTCGGAT
GATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCAAGAGAAACCAATTC
GGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTAAAGTTCGGAAAGCT
GAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCAC
Found at i:105334 original size:10 final size:10
Alignment explanation
Indices: 105285--105320 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
105275 CTAAGGACGA
105285 ATCGTCTAATG
1 ATCGTCTAA-G
105296 ATCGTCTAAG
1 ATCGTCTAAG
*
105306 ATCGTCTAGG
1 ATCGTCTAAG
105316 ATCGT
1 ATCGT
105321 GATCGTCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (10 bp):
ATCGTCTAAG
Left flanking sequence: Indices 104785 -- 105284
GCCCCCACCACTAGTGTTAAACGGAAATCAGTGAAGCCGGATTTACCCATTGCTAGTCCCAACCA
ACTGCCCGTTAAACTGAACGAAGTGAAAGGACCGGGAGGTAGTTTTCTTTAACTCGAACCGAGTT
AAAGAAAACCCACCGAAACAACTTTTAAAGGCCTTTAAAAGGCTCAGCGCTACGCGCTTCACAGC
GCTGGGGTACGGAGCTAATTCTAGCCTTCCCCAGAGTGAGTAGCCACGTCGGTCCGATTCTGGGT
GGCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGA
AAACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATT
TTTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGC
CTTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGA
Right flanking sequence: Indices 105321 -- 105820
GATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTCGATCGGTCGACACCG
GACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGGGAGGGAAACATTATG
ATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTCCGCAGTTCGGACTGA
ATTAGTTAGGCACTGAATTTTTAAAAGGCTGAATGGGCACTGAATGATGGGCTGCCGTTCGGCGT
GCTGAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCGGAATGGGCAATGATGATAGAATAA
TTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACTGAACGCA
AGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACGGCCTTTA
AAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGA
Found at i:105626 original size:38 final size:37
Alignment explanation
Indices: 105546--105638 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 37
105536 TTAAAAGGCT
* *
105546 GAATGGGCACTGAATGATGGGCTGCCGTTCGGCGTGCT
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
* *
105584 GAATGGGCACTGCATGATGGGCTGCCGTTCTACGTTCG
1 GAATGGGCACTG-ATGATGGGCTGCCGTTCGACGTGCG
*
105622 GAATGGGCAATGATGAT
1 GAATGGGCACTGATGAT
105639 AGAATAATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
37 5 0.10
38 44 0.90
ACGTcount: A:0.19, C:0.19, G:0.37, T:0.25
Consensus pattern (37 bp):
GAATGGGCACTGATGATGGGCTGCCGTTCGACGTGCG
Left flanking sequence: Indices 105046 -- 105545
GCGGGAAAAGGTGGTTTGATCCCGGACATTTTCAGACTCCAGTTTGGGGTACCTTCTGGAGGGAA
AACCGTGCGAAGTCTTTCCATCTATCTACAATCCCGGATTTCAAAATGGGAGCTTTGATCGATTT
TTCCCGGCCCGGGAAACTATTTGTTTCTCACTTTTCCGCGAAGGCCTTTAAAAGTCGTATAAGCC
TTTAAATGACAAATCGTCTAAGGTCTAAGATCGTCTAAGGACGAATCGTCTAATGATCGTCTAAG
ATCGTCTAGGATCGTGATCGTCTAAGATCATCTGATTCCGCATCAGAAATTTAGTACATAGATTC
GATCGGTCGACACCGGACGATTCTCCGTAGAATCCTCTTCTTTCCCGACCAGTGCGGTTTGCCGG
GAGGGAAACATTATGATGGGCTGCCAGTTCCGCAGCAAGCCGGACTGAATGATGGACTTAGGTTC
CGCAGTTCGGACTGAATTAGTTAGGCACTGAATTTTTAAAAGGCT
Right flanking sequence: Indices 105639 -- 106138
AGAATAATTGCCGGTTCGGATGATGAGCTTAGTTCGGGCTGAATGCGGCCATTGCACGTTGAACT
GAACGCAAGAGAAACCAATTCGGTTGGGCTAATAGTGTGTGCGTCCAAAAAGTCATCGAATCACG
GCCTTTAAAGTTCGGAAAGCTGAAGCCTCTTTAAAGAGCCTTTAAAGAAAGAAAGAAAGATCCCA
CTTTTTTACGGGTAGGGAAACTACGCTTAGGCCACGAACGAGGCAAAGTCTGGCAGCAGCCAATC
GCCAAGTCCCGAAGACCCGGAGAATCTTTTGGAATCCGCGCCCCGTAGCCCTACATGATGGGGTC
CTCCTCGTAGCCCTCGTAGGCCTCGCGTCAACAAGGCCTCTCCGATTTCTGGACTCAGAAGTGAA
TTCCACTGCGTGCACTTATCACTGCTTCGATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAA
GAACCTTTAATTTTCAATTAATTGAAAATTAAAGTTACTTTGGGG
Found at i:106595 original size:34 final size:34
Alignment explanation
Indices: 106557--106694 Score: 276
Period size: 34 Copynumber: 4.1 Consensus size: 34
106547 TCCCACTCCT
106557 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
106591 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
106625 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
106659 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
1 CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
106693 CC
1 CC
106695 AGCGTTACTT
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 104 1.00
ACGTcount: A:0.09, C:0.33, G:0.29, T:0.29
Consensus pattern (34 bp):
CCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGA
Left flanking sequence: Indices 106057 -- 106556
GATTTCCCAAGGGGAGACGAAATCGAAATTCGGCTAAGAACCTTTAATTTTCAATTAATTGAAAA
TTAAAGTTACTTTGGGGGAGACATTGAAATTCGCGCTACGCGCTTCCCTGGCAAGGGGTGGAACT
ATAGTGCACCCTCGCCCTATTCGAGACTCAAAAATCAATGCAGAGGCTATCTCGACTAAGTAAGA
TCGGGCAATAGATGTAGAAGAAGTCAAGTCCCGGCCTGGGCCAGTGTGGGAGGCCGAACCAAACT
GTAAGCTACCGGCCTTCGCTCGAACCCTTTAAAAGGGCTCGGTAATTTAAAAGGCAGCGCTACGT
GCCTAGACCCGGGCGGATGGAGGGTGGTCTTAGACCCTTTTAAAGGTGCTAGCGTTAAAGTACGA
AACCGAAAATGACTTGTATAGACGGTTCACCAAGGCGTACATGGCTAGCTACCGCGTACTGTGAA
ATTAACTTTCGAAGTGACCCAACTCCCCCCACTCCTCCCACTCCT
Right flanking sequence: Indices 106695 -- 107194
AGCGTTACTTTAATTTAGTTTCAATTCAATTTAAGGGTCCGAACGAAGTGAGGACAACTCCGACC
CTCTCCCTATCGGTCGAGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGG
TGTGAAATTAACTTTCTTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGC
CTTGCGGACTACTCGATGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCC
CGATAGGGGGAGGGGCGACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGG
AAAGCGCTACGCGCACCCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTAC
GCGCGCACCCACTACGTAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAAC
ACGGCAGGTAGGCCCCTACTTTCAGTGCCGATATTCGTTCGATGG
Found at i:107304 original size:24 final size:24
Alignment explanation
Indices: 107276--107324 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
107266 TCGCACTTGA
*
107276 CAGCTTAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
107300 CAGCTCAACGAACTACTTCCCACT
1 CAGCTCAACGAACTACTTCCCACT
107324 C
1 C
107325 TGTCTCAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.41, G:0.08, T:0.22
Consensus pattern (24 bp):
CAGCTCAACGAACTACTTCCCACT
Left flanking sequence: Indices 106776 -- 107275
AGTGCCTAAAGGCCGAAGGGAGGAGTTGCGCTTTAAAGCCTTTTAAAGGTGTGAAATTAACTTTC
TTTACTAGAGTCCCGCTACTTTAAAAGGTGCTTCTTCAATGCGATGCGCCTTGCGGACTACTCGA
TGCGATTCCGACTCAATCAACTCGGGCGAGCGTAAGCGAGCCACTCCCCCGATAGGGGGAGGGGC
GACCTTCGCATTCTAGCTAGGCTAGCTACGCACCTGGGCCGTGTACTGGAAAGCGCTACGCGCAC
CCGGCTGGCTACGCGAACTAAGCCTAAGGGCCGTACACACCTGACCTACGCGCGCACCCACTACG
TAGTGTGTACGCCTAGCTAGCACCCCACTACGTAGCGCGTAGCACCAACACGGCAGGTAGGCCCC
TACTTTCAGTGCCGATATTCGTTCGATGGCAGTTCGTCCTTACGGCAGGTCCTCTCGTTGTTCGC
TCGCGTAGCGCTAAGCGGTAGCATCTATATACGGCTCGCACTTGA
Right flanking sequence: Indices 107325 -- 107824
TGTCTCAGTCGTTCCCAGTCAGCTGAGCAGTCAGTCTTCCCAGCTTCGGCGTGCCCAACCATTAT
TGGATTCCTCTCTCCGTTCCGTACGAACCACTGACTCCTTACAAAAAGGGGGAGAAGCGGTTTCA
AAAAGGCCGTTGAAAGGGAGAAGAGGAAGGATGTCGAAGCTAATAAGGGATACGTTGGTGCTGAC
ATCGACTCGGTGGGGGACCCATTCCGCTCTCCACCACCAGGACGGGCCACCACCACCTTCTCTGT
TCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAGTACGTGACTTTA
AAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATTGAAAGTACTTTA
ATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATTAAATGAAATTAA
AGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCAC
Found at i:108134 original size:43 final size:43
Alignment explanation
Indices: 108073--108160 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
108063 GCCGTCGCGA
108073 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
108116 AAACC-TAAGTAACCTTTAATTTTCAATGAAATTAAATTAAAGT
1 AAACCGTAAG-AACCTTTAATTTTCAATGAAATTAAATTAAAGT
108159 AA
1 AA
108161 CCCCACTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 4 0.09
43 40 0.91
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.33
Consensus pattern (43 bp):
AAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGT
Left flanking sequence: Indices 107573 -- 108072
CACCTTCTCTGTTCACCACCAAGGCGTCCGCAGGCGAACCGAAAAGGACGCGTGCAGCGTTAAAG
TACGTGACTTTAAAGTTAAACCTCGGAGGTAGTTCCAGGTAATTTAAAGGCCGGCCCGCTTTATT
GAAAGTACTTTAATTTCATTTAATTTCAAATTAAAGTAACTTATAAGTTACTTTAATTTGAAATT
AAATGAAATTAAAGGTTCTTAGTCTTTGAAGAAAAATCAACGATGGAAACCTTGCACGTGTGGGA
CTACAGGACCACTGGGTAGGGCCCATCGTATCACGAGTTTGTAGGTGGTGGTGGACATTACTGAC
ATAACAGAGTCGGATCCTCGGCCTATCGGCCTCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCC
TCCAATGAACTCAGCCAGCCTGACTCCTTGATGCGGTGGTCGATATGGCCCAACTCCTCCCTATC
GGTCGGAGTGGGGGGAGTTGGCCCTTTAAAGGAGCGCCGTCGCGA
Right flanking sequence: Indices 108161 -- 108660
CCCCACTTTAATTTTCAATGAAATTAAAAAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGC
TCAGGTCGGAGAAACGTCCGCTGGTGGCTAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGC
CCCATAAAGTCCGCACATTAGCCTAATACAGCCCCGGATAAGCGTCCGCACATTAGCCTGATACG
GAGCCGGATAAGCGTCCGCTTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAG
CGTCCGGAGAAGCGACTTTTAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTC
CGGAGAAGCGTCCTCATTGTTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCT
TCCGGAGAAGCGGCCCCGTACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTT
ACGAGCCCTGGCAACGCATGGATTGTCCGTGCATTAGCCGGCAGA
Found at i:108339 original size:35 final size:35
Alignment explanation
Indices: 108299--108374 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
108289 GCCCCATAAA
*
108299 GTCCGCACATTAGCCTAATACAGCCCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
* * *
108334 GTCCGCACATTAGCCTGATACGGAGCCGGATAAGC
1 GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
108369 GTCCGC
1 GTCCGC
108375 TTCCGGCGGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (35 bp):
GTCCGCACATTAGCCTAATACAGACCCGGATAAGC
Left flanking sequence: Indices 107799 -- 108298
AAAAATCAACGATGGAAACCTTGCACGTGTGGGACTACAGGACCACTGGGTAGGGCCCATCGTAT
CACGAGTTTGTAGGTGGTGGTGGACATTACTGACATAACAGAGTCGGATCCTCGGCCTATCGGCC
TCGTGGCTTCGCCCCTCCCCTCCCGTCCAGTCCCTCCAATGAACTCAGCCAGCCTGACTCCTTGA
TGCGGTGGTCGATATGGCCCAACTCCTCCCTATCGGTCGGAGTGGGGGGAGTTGGCCCTTTAAAG
GAGCGCCGTCGCGAAAACCGTAAGAACCTTTAATTTTCAATGAAATTAAATTAAAGTAAACCTAA
GTAACCTTTAATTTTCAATGAAATTAAATTAAAGTAACCCCACTTTAATTTTCAATGAAATTAAA
AAGTCTTTGTAACTTTTGAATCAGACCAGCCGAAAGCTCAGGTCGGAGAAACGTCCGCTGGTGGC
TAGAAAGGGGTAACAGACTTACTATAGAAGTTTGAGCCCCATAAA
Right flanking sequence: Indices 108375 -- 108874
TTCCGGCGGAGAAAGGTCCGATGGCCACCCAAGAGAATGGTAGAAGCGTCCGGAGAAGCGACTTT
TAAAAGGCTGGTTCATAAATTTCCGATGCATAAAAGTCCGGTCTTCCGGAGAAGCGTCCTCATTG
TTTCCCGGATAAACGCTTGTGGCTAGAAAGGCCTCTGGTAGAAGCTTCCGGAGAAGCGGCCCCGT
ACGGCTTTTGGAGCAACGACTGTGGCTATAAAGGGGTAACATACTTACGAGCCCTGGCAACGCAT
GGATTGTCCGTGCATTAGCCGGCAGACAGAGCCGGAAATCTGTAAACGTACTCTATGGAGAAACG
GCCTCTTGCGGCTAGAAAGGGGGCCTCGATTCCACTCGATGGTTTGGAAAAGGGGCTTTAGCCTG
TCGCCCCTAACCACCACCACCCATAAATGGATGAATGGGTGGTGGCCTTCAAAGGGGCGACAGTA
GGGAAAATGGATTGATGCTCAACCGGGAGAATCCGTAGAATATCG
Found at i:111734 original size:70 final size:70
Alignment explanation
Indices: 111651--111785 Score: 270
Period size: 70 Copynumber: 1.9 Consensus size: 70
111641 AGGTTATATT
111651 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
111716 GGAAG
66 GGAAG
111721 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
1 TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
111786 CTTTTTCTTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (70 bp):
TTCAATGGTTTTCCGGGTTTTTTCGACACTCTTGGGTTTTCCCTAAGGAAGCACCCAAAAACGGA
GGAAG
Left flanking sequence: Indices 111151 -- 111650
TGGAAGGTTGCGGATACGACTTCGTGTCTTCTTTAAGAGGTCAACCGCCGCTTGGCCTGGATGAT
GTCCTGGTTGATTGGCCGACTCTAACGTCCCAAATAGCCAAAGGCTTATTACTTGTTCAACCTGC
GGTCTCTTTCTGCTTGACGGATTTGGAACTCTTGCATGAGTCATTGGTTACACTGGCGGGAGGAG
ACGAGCTTTTGGTAGAGTTCTCCGAGGATCCGGCCTTTGAAGGTCTACTTTTGGACTCGCTTAAA
ACGGTACTACCGCCGTCCTATTTTAGGGCTTTTTTCTCCGGTAGACTGTTCCGGGAGCTAATCCA
TTTGGAGGACGGATACTCTCGCCTTGTGGGGCAAATGCTTTCGGAACTCGAAGATCTAAGTACGC
CCTAAGGAGACGGTTTCTATGTTCGCCAACTCCGATTGATTAGTATTGATTCCGCGGATTCCGTC
AAGGGTTACTTTAATTTCATTTCATTGAAAATTCAAGGTTATATT
Right flanking sequence: Indices 111786 -- 112285
CTTTTTCTTGAGTTTCCCGGGATTTTTTGACACTTTAGGCGTTGCTTGGGCGGTTATCCCTTCTA
AAAATTCAATGAATTTTCAATCAACTCCTCGGGTTACTTTAATTTAATTTCATTGAAAATTAAAG
GTTCTTACGGTCGGAGTTGCCCTCCTATCGGAGGGCCCTGAATTGAACTAATTTTCAATTAATTG
AAAATTAATGCATTGAAATTGAAGTCACTTTAACTTTTGCAACTTTAAAGGCTCCCATTAAGATT
GAGAAATAATAAAAGTTCCTTTTGAAACGTTTGAGCATGATTTTCTAGCGCTTTTCCCAGAGATC
TTTCTCACTAACGCAACCATCGTTTTGCTCATTCATGGAGTTTTCAAAAGTACTTCTAAAGAGGA
TGATTATCCACCGTTAGTACTACATGCGGGGTGGCTTGGTTTACTTAGTGTTGTGCGCCTGGGAG
GGCACGTTCTGGGAGGCGAGGGTTGAAAGCCATCGCTCGGATGGA
Found at i:115703 original size:33 final size:33
Alignment explanation
Indices: 115656--115719 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
115646 CCTCCCGGTA
* *
115656 GGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGC
1 GGTCGGAGTGGTCCTCACTTCGCTCGGACCCGC
*
115689 GGTCGGAGTGGTCCTCACTTCGTTCGGACCC
1 GGTCGGAGTGGTCCTCACTTCGCTCGGACCC
115720 TTCGGCGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.08, C:0.34, G:0.33, T:0.25
Consensus pattern (33 bp):
GGTCGGAGTGGTCCTCACTTCGCTCGGACCCGC
Left flanking sequence: Indices 115156 -- 115655
ACCCAGCGCCACACGTTCTCCTGGGTCCCGGCAGGGGATCCCTCAAGTGCCCTTATCTCGGCTTC
TCCCGGAATAGGCGTTATCGAAGACAAGCCAGGAATGGCCGAAGTGAGTGGACACCCACTTTACC
GGTTAGAGAGGCCCTCTCTAAAACATTCACCAAAATGTTCACAGGGGCTAGGAACACTCGGTCGT
GGTGGGAACTTTTGTACATCATCCACGGAGCGCTCCGGAGTACACCCGACCAAATCTACTAAACG
ACTCAGGCCCTGCCGGGCACCCTTTAGGGAAGCCGGCCCTCGGCCGCCCCGATCACTACAACCGC
CAGCTCTCCCCAGGAGGAATGATATTGGATAAAGGGCCGGCAGGCCAACTCCTTTAAACCCCACC
TTAGGCTCTAAAGGGTGGGGTTTAAAGGAGTAGGCTAAAGCCCAACTTCCGCCCCCCACCACTTC
GGGGTGGTGGTGTGGGGGGCGGAAGTTGCCCAACTCCTCCCGGTA
Right flanking sequence: Indices 115720 -- 116219
TTCGGCGTTACTTTAATTTAATTTCCTTGAAATTTCTCCATTTCTCCCTTTAAGTGCCTCGGACC
CCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCCCCCCTTCGGTCGGAGTT
GTCCTCGCCTCGGACCCGGTAGGCCGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTACTTTAAAGT
ACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACTCCTCCCACT
CCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCACTCGACCGAT
AGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTATCGGTCGGAGTTGTCCTTCGGACC
AACTCCTCCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCTCCCTATCGGTCG
GAGTTGTCCTTCGGACCCTTGGGGGCCCCTGGCCCTTGCGGGCCC
Found at i:116137 original size:39 final size:36
Alignment explanation
Indices: 116081--116191 Score: 132
Period size: 46 Copynumber: 2.8 Consensus size: 36
116071 TTCGTTCGGA
116081 CCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
1 CCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
116117 CCCTATCGGAATTCGGAGTTGCCCTCCTATCGGAGGGCCAACTCCT
1 CCCTATCGG---TCGGAGTTG---TCCT-TCGGA---CCAACTCCT
116163 CCCTATCGGTCGGAGTTGTCCTTCGGACC
1 CCCTATCGGTCGGAGTTGTCCTTCGGACC
116192 CTTGGGGGCC
Statistics
Matches: 65, Mismatches: 0, Indels: 20
0.76 0.00 0.24
Matches are distributed among these distances:
36 11 0.17
39 14 0.22
40 4 0.06
42 4 0.06
43 14 0.22
46 18 0.28
ACGTcount: A:0.14, C:0.35, G:0.24, T:0.26
Consensus pattern (36 bp):
CCCTATCGGTCGGAGTTGTCCTTCGGACCAACTCCT
Left flanking sequence: Indices 115581 -- 116080
TAAAGCCCAACTTCCGCCCCCCACCACTTCGGGGTGGTGGTGTGGGGGGCGGAAGTTGCCCAACT
CCTCCCGGTAGGTCGGAGTTGTCCTCGCTTCGCTCGGACCCGCGGTCGGAGTGGTCCTCACTTCG
TTCGGACCCTTCGGCGTTACTTTAATTTAATTTCCTTGAAATTTCTCCATTTCTCCCTTTAAGTG
CCTCGGACCCCTTTTAGAGCGGTCAGACCAACTCCTCCCGGTAGGTCGGAGTTGTCCCCCCTTCG
GTCGGAGTTGTCCTCGCCTCGGACCCGGTAGGCCGGCAGTTAAAAGTGTTTAAAGCTCCCTAGTA
CTTTAAAGTACTTTTAGCGCTGGTTTTCGCGACGGCGCTCCTTTAAAGGGCCAACTCCCCCCACT
CCTCCCACTCCTCCCTTCGGTCGGAGTGGTCCTCACTTCGTTCGGACCCTTCGGCCTTTAGGCAC
TCGACCGATAGGGAGAGGGTCGGAGTGGTCCTCACTTCGTTCGGA
Right flanking sequence: Indices 116192 -- 116691
CTTGGGGGCCCCTGGCCCTTGCGGGCCCCTACCCCAGCAAGTGGCCTTTGGCCAGGCAAGCCGTA
AGGCTTCCCGCCGGTGGTGCGGCAGGCACCCCCTCGACCTATCGGTCGAGTGGTTTGCTGGCGCC
CCTGCCCCACCACCCCCCCCCATGAAGTTGGTGGGGGAGGGAGTTGGGCCGGCAGGCCTCTCGTC
CCCACCCACTTTGTAGGCGGTGGTGGGGACGAGAGGGCGGCCCCTACCCCAGCCAGTGGCCTTTG
GCCCCACCACCCTTGGAGTGGGTGGGGACGGGAGCGTTGTTTTCCTGGGCGCTACGCGCTTCACG
GAGCGCTAGAGGAACGACGAGGTTGAGACTGGTTGGGCAATAAAACGCTTCGCGTTTTATTGCGC
CTCAGAATAATGAGATGGAGTCAATAGTGTTCGTGCGAGCCGTATGCGGTGAGAGTCGCACGTAC
GGTTACGAGGAGGTTCGCGTCCATAGTAGGGTGTGGATGGGGGCC
Done.