Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_030753
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 524797
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:26395 original size:18 final size:18
Alignment explanation
Indices: 26355--26397 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
26345 ACCGCCCTGC
26355 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
26374 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
26391 CATAGTC
1 CATAGTC
26398 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 25855 -- 26354
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GAAGCTCAGAAAGAAGCAACCCTTGATAGCTGCGCCTAGCCTAACCTAGGTTGGGCTAGGCGCAG
CCGTTTTCTTGCTGGGCGCGCTAGCGCCAAACTATACACCAAGGTGGCTTCGCATGCTTGGGCGA
ACACTCGGCCCACCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAG
CACTTTCTAGTGTGAACCGAAGCAAGCAACGGAATGGCGCGAAAGCCGTTGCGCGGCGTTTTCTT
GCTGCGTCACGAGTCTACAAGCCTTTATCATTTCAGTGCTCGCTTCAGTAGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 26398 -- 26897
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACG
ATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGAA
TGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCA
TAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAA
TTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAA
Found at i:32506 original size:14 final size:15
Alignment explanation
Indices: 32481--32509 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32471 AAGTCAAAGC
32481 CCGTTGGACCGTTGA
1 CCGTTGGACCGTTGA
32496 CCGTT-GACCGTTGA
1 CCGTTGGACCGTTGA
32510 ACGATCCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.28, G:0.31, T:0.28
Consensus pattern (15 bp):
CCGTTGGACCGTTGA
Left flanking sequence: Indices 31981 -- 32480
GAACTAAAGCTCCACAACCCGTTCTTCCCGTTCAACCCTTCTCGTCCTGACTTTGCTTTCAATGG
ACCCCATCTGTATCCTTCCCAGCGACCCCGCTTGTGTCGACCAGCCAAGCAGATGTGATTCTGTC
TCTTCCTTTCATCTATTTTGTCCGAATCCTTGCTCGTTTCACTCCTTTCCGTGAAGAGCACACTA
GGCACCAAGTCGCAGTGACAACGCCTTCCAGCGGTAGTCCTCCGGTAATCAAGCAAGAACAAACA
ATCATTCATCGGAGGGAGCGTGGATTGTTTTCAAGTCAGGCAGATACGTGCTCCTTTAAGACCAT
TGATTGTCGCTCTTTGAACAGGCAGAGACGAACACACAATTCCAACGGCAGCAGGAGCAGGAGGA
AGAGAGACTTTCGAACCCGACACATCCACTGCACGATCCTTTGGAGCCGTAGTTCCGGGATTGGA
TTGCAAAGGGAGCGGGAATGCTTTGAAGCTCAACGAAGTCAAAGC
Right flanking sequence: Indices 32510 -- 33009
ACGATCCATGGAGTTCTCTCTGTCCTCCCTTTGCTTGAACTGGACTTTTCCGAAAAGGTGCTTTG
GCGGCTAAAAAAGATTCGAAGACACTCCTCAGGCTACTGAACTTCACTTTCAATAGCGTTTGCGT
GAGCTATCGCTTACTCAACTTGCACAAAGCTACTTCAGTAGCTTTGCCTTCGCTACAATTTCCTG
CGAAACTTGACTGACCTGTTAGGGCCTTTCATGCTCTCCATAGACATAGAAAGAAGCACAAGCCT
CACACCGGATTCAGGCTCTTTAAAAGGTCCTGTCACTTTCCTGTCCCTATCTAGTCCACCAGCCA
AGCCCAGTGAACCAGTCGATCCAACTTTGAAGTCGGAGAAAGCTTTTTGTTAACAAGTCGGAGTT
CGCCTGCCGCTTTCTATCTGTCCAAGTAAGTCGAACGAAGCCGTTAAAGGAGCGTTTGGAAAGAG
AACCAAGGAGGAGGATATGAAATAGAGAAAGACCATTTGAAACTT
Found at i:40332 original size:20 final size:20
Alignment explanation
Indices: 40296--40333 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
40286 GTCAGTCGGG
*
40296 CACTACGGCTTATGCTCCCC
1 CACTACGGCGTATGCTCCCC
40316 CACTACGG-GTATGGCTCC
1 CACTACGGCGTAT-GCTCC
40334 GTGGGTGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.16, C:0.39, G:0.21, T:0.24
Consensus pattern (20 bp):
CACTACGGCGTATGCTCCCC
Left flanking sequence: Indices 39796 -- 40295
ATGAATAATGATTCTCGCTCCCACCTACCACCCACCCCAGTCATGAGTAAAAAGGTCGGGGCGCC
TTGGGCTTCGGAATCCCCCGATTTCGCTTATCGATGCGGTCGACCCAGGCCGTGGTTCACATGTA
CCAATTACGCACCGGAGGCGTCATCCAGACAGGAGAGGACTTCAGTCAACCGAATCGGAAAGGGT
TTGATAGTATTTCCTTACGACTCGGACAGTCCAGATCACCAGATCGAAAGGGACTAAATGGGCAG
ATTCTTTGGTGGCACAAAAGCGTACAGTACAGTAGGAAACATTGAAATAGTGTTTTTCGAATTGG
GTCGGACAGCCCTTACTCCATTCGATACTCTCATGGCGGGCTGGACCGGAGGAAAGACGTTTCAT
TCGGGCTTCTTTCGAGTGACGCCCTTCATTGCACTCCCCGAAAGGCGCCTTTGGAAGTGGTCGCC
TTTAGGTGGCTTTCCTCAGGGACTCGATTCATTGGGTCAGTCGGG
Right flanking sequence: Indices 40334 -- 40833
GTGGGTGAGCTATGCCTACGTTTTGCCCGCCTTCCTACTGGTACAGATACTCAATGCGAGTTGTT
GTATTCGAATTTCAGGCTGTTCTCAATACGAGAGTTGCATTCGAGTTCTTGTACCTTTACGAACT
GGCGAAGCGGAGACCGATTCATTCATTCACGAAAACAGGGCCTTTCCCACCCCCTTTCTACCTAT
TTAGGAGGCTGGAAACCAGATCCGAGAGAAGACGAGTTGCCATCATCCTCAGCTTTGGTTACTAC
AGCTCGTGGCCATCATTCGCATTAACACATCACATGTTACAAAGGATGCTGGCTGACGAGGTATA
CCCAGGACAGGTGTTTAAAGCGTATGCGATCTTAGGTGACGGTTATCGCGGATCGTAAGGTTGCT
GAGCGTTATCAACAGCTCATGGCTAGCTTAGATGTTCGTATATCTAAGGAGAAGTCCTGGATATC
GAAAACTGGTTGTTTTGAATTTGCTAAACGCTTTGTCATCCGTAA
Found at i:53214 original size:30 final size:30
Alignment explanation
Indices: 53178--53277 Score: 164
Period size: 30 Copynumber: 3.3 Consensus size: 30
53168 TCCGCGTCGA
*
53178 GCTCGGGAGCTGCTCCTTCGCCTTGATTCG
1 GCTCGGGAGCTGCGCCTTCGCCTTGATTCG
53208 GCTCGGGAGCTGCGCCTTCGCCTTGATTCG
1 GCTCGGGAGCTGCGCCTTCGCCTTGATTCG
* *
53238 GCTCGGGAGCTGCGCCTTCGTCTGGATTCG
1 GCTCGGGAGCTGCGCCTTCGCCTTGATTCG
*
53268 GCCCGGGAGC
1 GCTCGGGAGC
53278 CTCCACCTCG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.07, C:0.33, G:0.35, T:0.25
Consensus pattern (30 bp):
GCTCGGGAGCTGCGCCTTCGCCTTGATTCG
Left flanking sequence: Indices 52678 -- 53177
CCAGCGCGGTTGTTCGTATTTCATTTTCTTCTTCCAAGCCAAGCCCTTTTCTTAGAAAGCACTCA
CTGAGTTACTTACGGAATCTCAAATCTCTCTCGACGCCGATAATTTGTTATGTGTCCAGGTCGAT
CAGAGGTTCGGCTTGCTTCTCCCCCACCTTTTTAACGTTCTGGGGCCCGTAATATATAATATATA
AACTCCTTCACTTCAAAAATAAGGCTCTTCATTAAAACTCCTCTTGACTTCCTTGTATACTCCAG
ACCGGTGCCCATTCCCCAAAAGATCCCGTACAATCCACTCCGCTTCCCGTATTTCCTCCTCCACA
CTAGGGTGGTTAGGATCCTGCGGGTGCGGGTGGGGGTGGGGCTCCCATTCCATTATTTGGAATAT
CCGGGCTTTCACCTGCTCATCTGAGCGATTTACGCCTTCTTCCACCAAGATGGAATTTAGGAGGG
CCGTCAGATTATCCACTACGGCGGAAAAGCGCTGCTCCGCGTCGA
Right flanking sequence: Indices 53278 -- 53777
CTCCACCTCGTCGAGGTCACTCTCCGACGAGGAGAGCATATCATTTTCAGGCAAGGACATGCCCG
AAAAAATGTTAGACCCCCCCTCGTCAGCATAAGATGATGCTATCGCTGCAATAATAGATAAGGGG
AATAAATATCCGAATAGGGTAACAATTAAAACTATACAGAGACAAATTAAAAAGTGGAAGGAATA
AATTATTTTTTTGAAAAGATGTAGCATTTTTGTGGATCCATATGTTTTTCTTCTTCTTCTTCTTC
TTTTAAAATAAAAGTTATTTAGATGAGGGTTTGGAAAGTAGGTTTTACCCACCAAAAGTATGGGA
CTCGAGTTTCCCGCACTGCGTGAGTGCGGCACGCACCTTTTTGTTTGTTTCGGAGCCGTTTTGGC
GGGGCGTACTAAACCCACTACGTACCACACCACCGGGCGGCTCGCCTGAATGCCGAGTCTTCCTC
CGCCGCCAACTCGACGTCGTCGTCACCTTTCTAGTCGAGCGGCGC
Found at i:53289 original size:30 final size:30
Alignment explanation
Indices: 53181--53289 Score: 94
Period size: 30 Copynumber: 3.6 Consensus size: 30
53171 GCGTCGAGCT
* * * * *
53181 CGGGAGCTGCTCCTTCGCCTTGATTCGGCT
1 CGGGAGCTCCACCTTCGTCTGGATTCGGCC
* * * * *
53211 CGGGAGCTGCGCCTTCGCCTTGATTCGGCT
1 CGGGAGCTCCACCTTCGTCTGGATTCGGCC
* *
53241 CGGGAGCTGCGCCTTCGTCTGGATTCGGCC
1 CGGGAGCTCCACCTTCGTCTGGATTCGGCC
53271 CGGGAGCCTCCACC-TCGTC
1 CGGGAG-CTCCACCTTCGTC
53290 GAGGTCACTC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
30 67 0.93
31 5 0.07
ACGTcount: A:0.07, C:0.36, G:0.32, T:0.25
Consensus pattern (30 bp):
CGGGAGCTCCACCTTCGTCTGGATTCGGCC
Left flanking sequence: Indices 52681 -- 53180
GCGCGGTTGTTCGTATTTCATTTTCTTCTTCCAAGCCAAGCCCTTTTCTTAGAAAGCACTCACTG
AGTTACTTACGGAATCTCAAATCTCTCTCGACGCCGATAATTTGTTATGTGTCCAGGTCGATCAG
AGGTTCGGCTTGCTTCTCCCCCACCTTTTTAACGTTCTGGGGCCCGTAATATATAATATATAAAC
TCCTTCACTTCAAAAATAAGGCTCTTCATTAAAACTCCTCTTGACTTCCTTGTATACTCCAGACC
GGTGCCCATTCCCCAAAAGATCCCGTACAATCCACTCCGCTTCCCGTATTTCCTCCTCCACACTA
GGGTGGTTAGGATCCTGCGGGTGCGGGTGGGGGTGGGGCTCCCATTCCATTATTTGGAATATCCG
GGCTTTCACCTGCTCATCTGAGCGATTTACGCCTTCTTCCACCAAGATGGAATTTAGGAGGGCCG
TCAGATTATCCACTACGGCGGAAAAGCGCTGCTCCGCGTCGAGCT
Right flanking sequence: Indices 53290 -- 53789
GAGGTCACTCTCCGACGAGGAGAGCATATCATTTTCAGGCAAGGACATGCCCGAAAAAATGTTAG
ACCCCCCCTCGTCAGCATAAGATGATGCTATCGCTGCAATAATAGATAAGGGGAATAAATATCCG
AATAGGGTAACAATTAAAACTATACAGAGACAAATTAAAAAGTGGAAGGAATAAATTATTTTTTT
GAAAAGATGTAGCATTTTTGTGGATCCATATGTTTTTCTTCTTCTTCTTCTTCTTTTAAAATAAA
AGTTATTTAGATGAGGGTTTGGAAAGTAGGTTTTACCCACCAAAAGTATGGGACTCGAGTTTCCC
GCACTGCGTGAGTGCGGCACGCACCTTTTTGTTTGTTTCGGAGCCGTTTTGGCGGGGCGTACTAA
ACCCACTACGTACCACACCACCGGGCGGCTCGCCTGAATGCCGAGTCTTCCTCCGCCGCCAACTC
GACGTCGTCGTCACCTTTCTAGTCGAGCGGCGCCGTATCGCGCAA
Found at i:67939 original size:33 final size:33
Alignment explanation
Indices: 67902--67964 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
67892 TCAATAATTA
67902 ATATAA-T-AATAATAATATATATATTATTATTCT
1 ATATAATTAAATAATAA-A-ATATATTATTATTCT
67935 ATATAATTAAATAATAAAATATATTATTAT
1 ATATAATTAAATAATAAAATATATTATTAT
67965 ATATATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 18 0.64
34 2 0.07
35 8 0.29
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (33 bp):
ATATAATTAAATAATAAAATATATTATTATTCT
Left flanking sequence: Indices 67402 -- 67901
AACAAGCAACTCCATGAGCGCTAGCGCGGCGCTAACGCGCAGCCGTTTTCTTGCTGCTAGCAACA
AGCAACGGCTTTCGCGCGTCAGCGCTCATGGAGTTGCTTGTTCGGTTAGGCTAGGCGCTCATGGA
GTTGCTTGTTTCTTCGCTGGTTCGAACAGATCCCTTTCCGCCTTTGAATTAGCTACTACTACTAC
TGATGAATGAACCTTCGCTGCACTCGGCCGGCAGAGATGGCAGGGAAGGGCATTTCTTTGCCGTG
ATCCCCACGTTCAGCTGTTAATCCGTACCTATCCACCCGATGTGATAGAGCGATACTCTGTTCAA
TTCCCCTTTGATCCGATGCCTACTACCTATCATAAAGGCAGCCAGCAGTCCATGGCTGGCTGACA
TATCACGGTTTCACCATCAGAGGGAGGGGATGGAAAGAAAGGAGTCGATCACCTAGCCGATCCCG
AATAGCCCGATCTTTATTTCAACCGATCCGCCGCCTCAATAATTA
Right flanking sequence: Indices 67965 -- 68464
ATATATATTATTTCTAAATTATATTATAATAATATATATATTATTTAGAAATAAAAATATTCTTT
TATTCTTATAATAATAATATATAAATTTCTATTTATATATATATAAATTCTAAAAATATAAATAC
AAAATAAATAGATTCAATTATTATTATTATTATTATTTTTTTTTATATTACATTTTTATATGGAA
GATAGTCGGCCCACTTCTAGCCGTTCAAGCGATTATGCCTGTTCTAGCCCTACCATCCGCCCCTA
TCATAATAGAAAGGGGTACTTTCGAGCTGATCTGTAACGGATCAAAGCGACCGTTAGTCGGGCTG
ATCTGTGATTGGTCAAGGCGACCGAGAGGACACGTACCTCCTCCATATTCCTTAAATGGGCAAGA
CTCGGGTACTGCATGCGATAAGTTTTATTGTTTACTGAACAACTACATAGATCTTGATGGATTTT
GATGCAATGGATATCATTACTCCACCACATAAGCCATCCCATGAG
Found at i:67988 original size:30 final size:32
Alignment explanation
Indices: 67949--68010 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
67939 AATTAAATAA
67949 TAAAATATATTAT-T-ATATATATATTATTTC
1 TAAAATATATTATATAATATATATATTATTTC
*
67979 TAAATTATATTATAATAATATATATATTATTT
1 TAAAATATATTAT-ATAATATATATATTATTT
68011 AGAAATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 12 0.43
32 1 0.04
33 15 0.54
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (32 bp):
TAAAATATATTATATAATATATATATTATTTC
Left flanking sequence: Indices 67449 -- 67948
TTCTTGCTGCTAGCAACAAGCAACGGCTTTCGCGCGTCAGCGCTCATGGAGTTGCTTGTTCGGTT
AGGCTAGGCGCTCATGGAGTTGCTTGTTTCTTCGCTGGTTCGAACAGATCCCTTTCCGCCTTTGA
ATTAGCTACTACTACTACTGATGAATGAACCTTCGCTGCACTCGGCCGGCAGAGATGGCAGGGAA
GGGCATTTCTTTGCCGTGATCCCCACGTTCAGCTGTTAATCCGTACCTATCCACCCGATGTGATA
GAGCGATACTCTGTTCAATTCCCCTTTGATCCGATGCCTACTACCTATCATAAAGGCAGCCAGCA
GTCCATGGCTGGCTGACATATCACGGTTTCACCATCAGAGGGAGGGGATGGAAAGAAAGGAGTCG
ATCACCTAGCCGATCCCGAATAGCCCGATCTTTATTTCAACCGATCCGCCGCCTCAATAATTAAT
ATAATAATAATAATATATATATTATTATTCTATATAATTAAATAA
Right flanking sequence: Indices 68011 -- 68510
AGAAATAAAAATATTCTTTTATTCTTATAATAATAATATATAAATTTCTATTTATATATATATAA
ATTCTAAAAATATAAATACAAAATAAATAGATTCAATTATTATTATTATTATTATTTTTTTTTAT
ATTACATTTTTATATGGAAGATAGTCGGCCCACTTCTAGCCGTTCAAGCGATTATGCCTGTTCTA
GCCCTACCATCCGCCCCTATCATAATAGAAAGGGGTACTTTCGAGCTGATCTGTAACGGATCAAA
GCGACCGTTAGTCGGGCTGATCTGTGATTGGTCAAGGCGACCGAGAGGACACGTACCTCCTCCAT
ATTCCTTAAATGGGCAAGACTCGGGTACTGCATGCGATAAGTTTTATTGTTTACTGAACAACTAC
ATAGATCTTGATGGATTTTGATGCAATGGATATCATTACTCCACCACATAAGCCATCCCATGAGT
ATACATGACCCCACTACCTGTATAAAGCGTACATCCCTGCTCTTT
Found at i:68088 original size:21 final size:22
Alignment explanation
Indices: 68042--68089 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
68032 TTCTTATAAT
**
68042 AATA-ATATATAAATTTCTATT
1 AATATATATATAAATTTCTAAA
*
68063 TATATATATATAAA-TTCTAAA
1 AATATATATATAAATTTCTAAA
68084 AATATA
1 AATATA
68090 AATACAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATATATATAAATTTCTAAA
Left flanking sequence: Indices 67542 -- 68041
TCTTCGCTGGTTCGAACAGATCCCTTTCCGCCTTTGAATTAGCTACTACTACTACTGATGAATGA
ACCTTCGCTGCACTCGGCCGGCAGAGATGGCAGGGAAGGGCATTTCTTTGCCGTGATCCCCACGT
TCAGCTGTTAATCCGTACCTATCCACCCGATGTGATAGAGCGATACTCTGTTCAATTCCCCTTTG
ATCCGATGCCTACTACCTATCATAAAGGCAGCCAGCAGTCCATGGCTGGCTGACATATCACGGTT
TCACCATCAGAGGGAGGGGATGGAAAGAAAGGAGTCGATCACCTAGCCGATCCCGAATAGCCCGA
TCTTTATTTCAACCGATCCGCCGCCTCAATAATTAATATAATAATAATAATATATATATTATTAT
TCTATATAATTAAATAATAAAATATATTATTATATATATATTATTTCTAAATTATATTATAATAA
TATATATATTATTTAGAAATAAAAATATTCTTTTATTCTTATAAT
Right flanking sequence: Indices 68090 -- 68589
AATACAAAATAAATAGATTCAATTATTATTATTATTATTATTTTTTTTTATATTACATTTTTATA
TGGAAGATAGTCGGCCCACTTCTAGCCGTTCAAGCGATTATGCCTGTTCTAGCCCTACCATCCGC
CCCTATCATAATAGAAAGGGGTACTTTCGAGCTGATCTGTAACGGATCAAAGCGACCGTTAGTCG
GGCTGATCTGTGATTGGTCAAGGCGACCGAGAGGACACGTACCTCCTCCATATTCCTTAAATGGG
CAAGACTCGGGTACTGCATGCGATAAGTTTTATTGTTTACTGAACAACTACATAGATCTTGATGG
ATTTTGATGCAATGGATATCATTACTCCACCACATAAGCCATCCCATGAGTATACATGACCCCAC
TACCTGTATAAAGCGTACATCCCTGCTCTTTGACTCGGTCAAAGCTTTTTTTAAGATAAGTCAAA
AGCTGGAATCCGAGAGGACCCCCTAAGAGCGTCTTGTAAACCAAT
Found at i:96002 original size:22 final size:22
Alignment explanation
Indices: 95974--96019 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
95964 GCTGTCTGCG
95974 CGAGTCACCTTCTTCTAGGCTC
1 CGAGTCACCTTCTTCTAGGCTC
95996 CGAGTCACCTTCTTCTAGGCTC
1 CGAGTCACCTTCTTCTAGGCTC
96018 CG
1 CG
96020 CTGGACGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.37, G:0.20, T:0.30
Consensus pattern (22 bp):
CGAGTCACCTTCTTCTAGGCTC
Left flanking sequence: Indices 95474 -- 95973
GCGCCGCTGCAAGCTCCGGCAGCAAGTTCAGGCGCCCGCTAGGGCGCCGCAACGCGCTTTGCCGG
AGTAGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCG
CAACGGCTTGAGCGCTAGCGCTCATGGAGTTGCTTGTTGCCCATGCATGATGAAAAACTACTGCG
CGCGCTAGCGCGCGCATCCGTTTTTCATCATGCTTAACGCGCAACGGCTTGAGCGCGTCAGCGCT
CATGGAGTTGCTTCTTTGTTGGTTAGGGGCTTTCTTCGCATGCACCGTTTGCTTGGTTGACTTTG
TCAGAAAAGAAAGTAGGTTTCGGGGGTTCATTGATTAGTAAACCTCCGGTGCTGGTAAGGTCGGG
ACCGTGGTCGTCCGTCTCCGGTTTGCCGGCCGATAAGATCTCTGAAATTGACCAGCCAGCTGGGT
TGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCG
Right flanking sequence: Indices 96020 -- 96519
CTGGACGACACGGCATTCTCGTTCAAATATAGGCCGGCCGTACTTGTGATGGTTCCCAAGGATCC
AATATGACCACTTAGGTCTACGTTGCCACGATATTGTTCTATGGAAGCGGGCGGGCTGCTTTTTA
GAAGTTCGGCCCGGTTTTTTTTGGTGTCGTAGGGGAGGGATTGACCTTTCTAACGCATATTCTGT
CGTACCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTAC
TTGACTAAGCCCCGTGCTCGTCCAAGGAGGGAGTTTGCTTTACCCAACTCCCCTTTTTGATAACA
AGGCAGAAACCCCCGACCCTACATTCATTAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTC
TTTTTTCTTCCCTAAAATCTTGGATTTAAAAGTTGGTAAAGACCCACCCCTTGTTTCAGTCAGAA
TGAGTCCCCGGGACCCCGGGACATTGGCTTCCGCCAACAGTGAAC
Found at i:127215 original size:6 final size:6
Alignment explanation
Indices: 127204--127240 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
127194 ATCCTAGAGC
127204 TTTCTA TTTCTA TTTCTA TTTCTA TTTCTA TTTCTA T
1 TTTCTA TTTCTA TTTCTA TTTCTA TTTCTA TTTCTA T
127241 AGAAATAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTCTA
Left flanking sequence: Indices 126704 -- 127203
ATCACCCCCGCTATCCCACTTCCTTCTATTCAAAAGGCGAGCAGCCCTTAAACAAAAAGGCCCTA
AGAGGGCTCTTCGCCTTTATATATTACATAAGCCCTAAAGTAGGTAGCCCCGAAAGCCTCACTCA
TAAGTTGCCGGGGTTGACAATGGAAAAGGCAGATGGGCCGCGGAGTCATGGGAACGAGGAAAAGT
CGTTATTTGTTGGAACAGAGATGCGAACGGCCTCCACTCCCCTTTCTCCTCCAACCCACAACCTT
CTAGAGAGGCCTATACCTAGCCTAGAGCTGGGGGCCTCAAAACAGATCAAGCAGGAGTTTCAGTC
AGAATCACTCTACTGTGCCGCCGATCTATTGATTCCATTCATTGCCAAAAACAAGGTGGCTTGCT
TTCTTTCAAGCCACACTGGAAGGGAGGGGGCCTCTCTTAAGGCGGGTTGGTTGGGTCTTTGACTT
TGACCGCCGCTGCGGTAGCCAAAGAATCCTACGCAATCCTAGAGC
Right flanking sequence: Indices 127241 -- 127740
AGAAATAGAAATATAGAATCGCGTGGAAAGGAGCGAAGCCTCTTTCTATCTTTCTATGTAGATCG
CGTATACAGGGGATGCTGTACATGATCCTTTGATCAAGATTCCGTTACCGATTCGATTTTTTCTT
TTTTTTTCTTCTGGCCGTGCCGTTTGTTTGATTGATTCTTTGGGCGGTAAGTCAAGAATAAGGCC
GATCTCCAAGGCAACTGATTCCGGAAATAAGGAACAAGGAGTCAAGAGGAGAGGTGTAGCCGATG
AGCAACAGGATGAGTAAGCTAACATAACTGCAGGGGATGATGAACACAACTATCTGATGATGCAT
CTCAGCTGCTTCATTCTATTGAAGCTTGGGTAATGGATGATCAGATGGATCGGGTAGACGACCCA
GCAGAAACATTGATTCTGCCCGACAGCGGAAAAGCGGTGAATTCTCCATATCGGCCTGGACTCCT
AAAGCAAATAAGCCCCCCGATCGAAGATGAAAGCCAAGGCGGGCA
Found at i:146370 original size:27 final size:27
Alignment explanation
Indices: 146339--146393 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
146329 ATAAATTAAT
146339 TAAAACTATGCTTAATAAACCCACAGG
1 TAAAACTATGCTTAATAAACCCACAGG
146366 TAAAACTATGCTTAATAAACCCACAGG
1 TAAAACTATGCTTAATAAACCCACAGG
146393 T
1 T
146394 GGGATCCCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.24
Consensus pattern (27 bp):
TAAAACTATGCTTAATAAACCCACAGG
Left flanking sequence: Indices 145839 -- 146338
GGATTCATTGCCGAGATACAAATTGGGTTATTCCGCTTGTTGAAAAACAAGACTGAAAAAGAAGA
GAAATTGGAGAGACGAGGTTTTATCGCCAACAACGTGGGATTTGACCCCCTGTTAGTTAGTATGA
AGAAAAAGAAAAGATAGGGGGGTCAGAGCAGAAAAAAACGAATCTTCTTCTCCTGTCATCCATAA
GATTTTACCTTCATCGGAAATACCTAAAATGAAGGATTGGTTAGACACACGTATATGAGACTCCT
TTCCTCTCGAGATAGGCTTCACCAGAACTTTGAGACTCAACTCATTTGTGATAGCCTTCAACATG
CCCCTCATTTTTACGTAATTTCTTTGATTCTCTCATCTGGAATGGGCTTTGTTCCCTTTTTGACT
GATTGCTCAGAAATGACTATTATGACCTGAGTCTGGTACCGAAAGTATTTCCAGTCCCGCGGGAG
TACCACAGATACCATTCGGTACATCTCATCTAAGTATAAATTAAT
Right flanking sequence: Indices 146394 -- 146893
GGGATCCCCCGACCTTTATTAATTGCACTGCACTTTCCATTTTTATCATAAACTTTATTTGAAAA
AAAAGAATAAAAAATATCCTTGATTTTCATTAAAAAAGGGATCCGTTTCTTTTTCAACCTTTCTC
TATTGACAAAACCGTAACTTAAATCCAGATCGAGATGATAGATTAGAAAAGGTTGTTCTTCGATA
TCCCGTATGCCCCGCATAAACCTTTCAAGCGAAAGATTCAAGCGAAAAGCATATGAACAAGCCAA
AAAAGAAGTATCCATAATGTAATTAAAGACTCGAACGATGGCCTCAGAGACCAGCAAATCTTTCT
TACGACTATAACGAACCGTTGCCAATACTGACCCTAGTCTCCGCAGGTAATGAATCTCTTGGATC
GCTCCTACTCGTACTGTTTTATTCACTTCTCCAGCTCGAAATGCTGGACTGGATGCCGAGTAGTA
GCCGGCCGGCTAGGTAGTGACTGGTGCTGCTTTCGCAGACTATGC
Found at i:173251 original size:12 final size:12
Alignment explanation
Indices: 173211--173257 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
173201 AGACGAAGGA
*
173211 GAAATCGTAGGT
1 GAAAGCGTAGGT
*
173223 GAAAACGTAGGT
1 GAAAGCGTAGGT
*
173235 GAAAGCTTAGGT
1 GAAAGCGTAGGT
*
173247 GAAAGTGTAGG
1 GAAAGCGTAGG
173258 GTTACCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (12 bp):
GAAAGCGTAGGT
Left flanking sequence: Indices 172711 -- 173210
AAAGCATAAGACGAAGCAATAAGTCTAGTTGGCTTAAGTCGACCAAAAGTCGTTGCTTGCCTATC
TCAGTAGGAACTTGGAACAGTCTCCGATTTCAAAGGCGAAGCCGAGGAGGTCCCATTCCAATGAG
AATCAAAGGCAATCGGGAACGGGTTTTCATCTCCCCTTTTTGTTTGTTCTCGTCTAAGCAGTCGG
CCCAGTCTCGTCTCCTGTCTCGTACGTAGCAGGGAAAGTAAAGCCTGTGAGCTAGTTCGAGGCAG
TGAGCCAGTGCCTGTGGTTGAAGTCTAAGGTTCAAAAGCAAACCTGCTTTCTCAGGTTCAAAAGC
GGAAGGCGAAAAGCTAGTTAGGCACATTCAAGGCGAAGCAGCTACATAGTTCGGTTCGAAAGCCG
AGGTCGTCCCTATCGCTGGTTCAAAGCTAGAAGCAAGACTCGGTCCTGTTCTAAAGCTAGGTCCA
GAAAGGCGAGGTCCCAAAGAAAGGCTAGGCGAAGAAGACGAAGGA
Right flanking sequence: Indices 173258 -- 173757
GTTACCAACTCGGGTGGGTTCTCACGCCAAGGTTCCTTTGTTTCGGGCAAGTCCAATTACAAACA
AAAGAGAAGGTCGGTCCCGTACCCGAACAAAGAAAGGCTAGACCGAAGGTCCCGTCCCACGGGTT
AGGTGCTTAGCTGAAGGTGGAAGTCCAAAGCTTAATAAGGTGGAAGGCGAAGCCGAGGCGGGTTG
AAAGACAAGAGAGAAGAATTCAATCTCCCCTATTTGTTCCCTTCTCAATGGTTGGTCGGTTGGCC
GGAGGCCAGGATGCTTTGGTTTATCGGATCGATCGCAGTGGTCAAGTGCGCTGGTCTCTTTCCCA
AGTCGCAGGGATACCAAAAGCAGAGGAAGCAGTTAGTCCAGCGGAGGAATCAATAGATCTAGTTG
GTTTAGAGCAGACAGAGTTGGTTTTAGTTGCTCCAGACGAGATTGGTCCAGGCAGAGGTGCCAAA
GGCTAAAGGCAAAAGGCTCAGCTCAGGCAAAGCTCTACTCTAGGG
Found at i:180049 original size:30 final size:30
Alignment explanation
Indices: 180015--180114 Score: 164
Period size: 30 Copynumber: 3.3 Consensus size: 30
180005 CGAGGTGGAG
* * *
180015 GCTCCCGGGCCGAATCCAGACGAAGGCGCA
1 GCTCCCGAGCCGAATCAAGGCGAAGGCGCA
180045 GCTCCCGAGCCGAATCAAGGCGAAGGCGCA
1 GCTCCCGAGCCGAATCAAGGCGAAGGCGCA
*
180075 GCTCCCGAGCCGAATCAAGGCGAAGGAGCA
1 GCTCCCGAGCCGAATCAAGGCGAAGGCGCA
180105 GCTCCCGAGC
1 GCTCCCGAGC
180115 TCGACGCGGA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.25, C:0.35, G:0.33, T:0.07
Consensus pattern (30 bp):
GCTCCCGAGCCGAATCAAGGCGAAGGCGCA
Left flanking sequence: Indices 179515 -- 180014
GCGCCGCTCGACTAGAAAGGTGACGACGACGTCGAGTTGGCGGCGGAGGAAGACTCGGCATTCAG
GCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCCCCGCCAAAACGGCTCCGAAACA
AACAAAAAGGTGCGTGCCGCACTCACGCAGTGCGGGAAACTCGAGTCCCATACTTTTGGTGGGTA
AAACCTACTTTCCAAACCCTCATCTAAATAACTTTTATTTTAAAAGAAGAAGAAGAAGAAGAAAA
ACATATGGATCCACAAAAATGCTACATCTTTTCAAAAAAATAATTTATTCCTTCCACTTTTTAAT
TTGTCTCTGTATAGTTTTAATTGTTACCCTATTCGGATATTTATTCCCCTTATCTATTATTGCAG
CGATAGCATCATCTTATGCTGACGAGGGGGGGTCTAACATTTTTTCGGGCATGTCCTTGCCTGAA
AATGATATGCTCTCCTCGTCGGAGAGTGACCTCGACGAGGTGGAG
Right flanking sequence: Indices 180115 -- 180614
TCGACGCGGAGCAGCGCTTTTCCGCCGTAGTGGATAATCTGACGGCCCTCCTAAATTCCATCTTG
GTGGAAGAAGGCGTAAATCGCTCAGATGAGCAGGTGAAAGCCCGGATATTCCAAATAATGGAATG
GGAGCCCCACCCCCACCCGCACCCGCAGGATCCTAACCACCCTAGTGTGGAGGAGGAAATACGGG
AAGCGGAGTGGATTGTACGGGATCTTTTGGGGAATGGGCACCGGTCTGGAGTATACAAGGAAGTC
AAGAGGAGTTTTAATGAAGAGCCTTATTTTTGAAGTGAAGGAGTTTTAATGAAGAGCCCTATTTT
GGAATTTCTGTCATTGGCCTGACCAGATATTTGTTTTCATGCCTTTTTTGGGGGGACCAACCCAA
CCGGCGATTTCCGACAAGTCTTTCTGAATTGTTAGAGCAAGAAGCGGAACTACAGGGATTAAATG
AAAAGTGTTTCTTACGATTACGCCCAACAGCCCACTTGAGCAATT
Found at i:200693 original size:16 final size:16
Alignment explanation
Indices: 200658--200690 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
200648 TATGCGTATC
200658 TTGGTGGTCGTTACTT
1 TTGGTGGTCGTTACTT
*
200674 TTGGTGGT-GTTTCTT
1 TTGGTGGTCGTTACTT
200689 TT
1 TT
200691 TGGCTGACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.03, C:0.09, G:0.30, T:0.58
Consensus pattern (16 bp):
TTGGTGGTCGTTACTT
Left flanking sequence: Indices 200158 -- 200657
CTACTCATCCATCAGCTCCTCTCGTAGATGCGGTGCGGTTTTACGAAGCGTCTAAGCACAGTTCA
CTCGCGTTGATCAATCAAGAGTTTTGCCGCCACTCCTTAAGGTTACCTGTTGTATCATACACTTC
TTGCATTGTTTCCCACGCTTCATACCCCCCTCTTTCTTCTTAAGGTAAAGGGCCAGGCATGGTGG
GGTAGGAGCATCCAGTCGGCAATCTTTTTGGCTTGACCAAGAAGTCTTATGTCCTCCGAGTCGCA
CGGCGTTTTAACCGAAAGAACTTCTTGCGCAATTCATGCGTTTCTGTTTTTATGACCAGAAATTG
TTTCTTGATTTCCATTTCAAATTGTTCTCTGGACTTTTTATCAATATGAGGTGATCGTAACACAG
TATATAAGACTCGTGATTCAGGCAATCCAATCTTCCGTGTGTAAGGCGGAAGCCCCCAAAAATGG
TTTTCCAAAAATGGGTGATCAAAAGATCGAATCACTATGCGTATC
Right flanking sequence: Indices 200691 -- 201190
TGGCTGACTCCTCTTCCTGTTCTATTGATCAGAAGCATCCAGCAGCGCCACGCCGGTTTAGAATT
CGATTCTAAGGGCTAAGGCTCCCCTTATCCCCCCTCCCTTTTCTTTCCCCCCTGGCCGTGTGTGG
GCCACACTTCAGAAAGGCCCTACGGGGGTCCTTCACTTACTTGTGTGAGCCCCCCGCCCCGCGAA
AACTGATCCACACCCCAGCAACCCGTCTATACAATTTCATAATCTATTATTGCCCGAAAAATTCG
GCTTAGATGAAGGCTACAATCAGGAAAGAGTAGAAGCTCCAAAAGGAGCGTTTTCAGGACAGGTG
GGCTTAGGGGCTGGAGAAAACAGAATGCCGCGCCTATTTTTGAGCACGATCTCCGGCTCGACTCC
AAGTTGGCCTAAAACGCACATGATAGCATTAAAAGTAGCCTGGTGTATATCCAGGAGATCCCTTT
GCTCATCTTCCGTGAGAAGCCCCGTAGGAAAATGTTATTGGTCGC
Found at i:202456 original size:8 final size:8
Alignment explanation
Indices: 202443--202491 Score: 62
Period size: 8 Copynumber: 5.9 Consensus size: 8
202433 TATTTTTCTC
202443 TAAATATA
1 TAAATATA
202451 TAAATATAGA
1 TAAATAT--A
*
202461 TATATATA
1 TAAATATA
202469 TAAATATA
1 TAAATATA
*
202477 TAAATAGA
1 TAAATATA
202485 TAAATAT
1 TAAATAT
202492 TTATTTATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
8 28 0.80
10 7 0.20
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (8 bp):
TAAATATA
Left flanking sequence: Indices 201943 -- 202442
AAACTGCCCTTCCATATAGATCGTCGTGGCATGAACTCTGAATTTCCTCGCTTCGATTCCGTCCG
AATTAGCTCCTCCTCCTCCTCCTTCTCCTCCAAGATCGTCGTTGGTCCTTCGTTCGTAGTGGTCA
TTGTATAGTGAGAAAGCTCACCCCTGCCTGCGAGACGAGAAAGCCCTCTTTTACATCACATGAAT
TGAAATGCTACAACCAATTGTTGTTCTTTTGACGATGAACCACTCCGGTACAGACTATACGGAGT
AAATTTTGAGAAAGTGAACAGTCAGTATCGTACTTCAAAGTCCTAACTGTGGCATGTGAAAACAG
TCCTTCCCTTGGTTTTAAGCCTTTATTCTTAAGGTCCGTACAGCTCAGGAATGCTAATGTGAAAC
CCAGACTAGCGGAGCACTATATATACGAAATTTTTGAAAACCCTATTAAAATAAATAGAAAGAAA
TAGAAATAGAAATCGTTTTTTCTATTTATTTTATTTATTTTTCTC
Right flanking sequence: Indices 202492 -- 202991
TTATTTATCTAAATATTTATATATTCGTAGTTCTCTACCTCTATTCATAGTAGTACTGCTCCATG
TTAAAGAGGAAAAGATTTCGTCAAGCTAGCAAAGGCCTCTTCTATTGACTAGTTGTCTGGTTAGC
CAGCCGGTAAGACTGTTCTTTCCTCTCTTACTTGGCTAATAGTTGGCAATACCCTTCCCAAGTTA
CTAAAAGGGCGGCTTTCGGCTTTCTGACTACTGGTACTACTGGCTGGCAGACTACTGTAACTAAA
GACCTTTCTTTTCCTTTCTTACTTGACTCTATGAATAGTGACCTTATTCCTCTTCTTTTCTGTCT
TACTAGTTCTGCCTTACTTACTGTCTTGTTCGACTATCCGGTTAGACAGACCTTCTTTACTTGTC
TCTTTCTGCTTCCCTTTCCTACTAGCCTAGCCGTATAGACTAGCCACTATAGCTTCCTTACATCA
GTGACCTCCTTAATCAACTGTACTAATAGCCGTACTAATACCTTC
Found at i:202467 original size:16 final size:17
Alignment explanation
Indices: 202444--202491 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
202434 ATTTTTCTCT
202444 AAATATATAAATATAGA
1 AAATATATAAATATAGA
* *
202461 TATATATATAAATATA-T
1 -AAATATATAAATATAGA
*
202478 AAATAGATAAATAT
1 AAATATATAAATAT
202492 TTATTTATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 12 0.46
18 14 0.54
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (17 bp):
AAATATATAAATATAGA
Left flanking sequence: Indices 201944 -- 202443
AACTGCCCTTCCATATAGATCGTCGTGGCATGAACTCTGAATTTCCTCGCTTCGATTCCGTCCGA
ATTAGCTCCTCCTCCTCCTCCTTCTCCTCCAAGATCGTCGTTGGTCCTTCGTTCGTAGTGGTCAT
TGTATAGTGAGAAAGCTCACCCCTGCCTGCGAGACGAGAAAGCCCTCTTTTACATCACATGAATT
GAAATGCTACAACCAATTGTTGTTCTTTTGACGATGAACCACTCCGGTACAGACTATACGGAGTA
AATTTTGAGAAAGTGAACAGTCAGTATCGTACTTCAAAGTCCTAACTGTGGCATGTGAAAACAGT
CCTTCCCTTGGTTTTAAGCCTTTATTCTTAAGGTCCGTACAGCTCAGGAATGCTAATGTGAAACC
CAGACTAGCGGAGCACTATATATACGAAATTTTTGAAAACCCTATTAAAATAAATAGAAAGAAAT
AGAAATAGAAATCGTTTTTTCTATTTATTTTATTTATTTTTCTCT
Right flanking sequence: Indices 202492 -- 202991
TTATTTATCTAAATATTTATATATTCGTAGTTCTCTACCTCTATTCATAGTAGTACTGCTCCATG
TTAAAGAGGAAAAGATTTCGTCAAGCTAGCAAAGGCCTCTTCTATTGACTAGTTGTCTGGTTAGC
CAGCCGGTAAGACTGTTCTTTCCTCTCTTACTTGGCTAATAGTTGGCAATACCCTTCCCAAGTTA
CTAAAAGGGCGGCTTTCGGCTTTCTGACTACTGGTACTACTGGCTGGCAGACTACTGTAACTAAA
GACCTTTCTTTTCCTTTCTTACTTGACTCTATGAATAGTGACCTTATTCCTCTTCTTTTCTGTCT
TACTAGTTCTGCCTTACTTACTGTCTTGTTCGACTATCCGGTTAGACAGACCTTCTTTACTTGTC
TCTTTCTGCTTCCCTTTCCTACTAGCCTAGCCGTATAGACTAGCCACTATAGCTTCCTTACATCA
GTGACCTCCTTAATCAACTGTACTAATAGCCGTACTAATACCTTC
Found at i:202469 original size:12 final size:12
Alignment explanation
Indices: 202448--202491 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
202438 TTCTCTAAAT
*
202448 ATATAAATATAG
1 ATATATATATAG
*
202460 ATATATATATAA
1 ATATATATATAG
*
202472 ATATATAAATAG
1 ATATATATATAG
*
202484 ATAAATAT
1 ATATATAT
202492 TTATTTATCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (12 bp):
ATATATATATAG
Left flanking sequence: Indices 201948 -- 202447
GCCCTTCCATATAGATCGTCGTGGCATGAACTCTGAATTTCCTCGCTTCGATTCCGTCCGAATTA
GCTCCTCCTCCTCCTCCTTCTCCTCCAAGATCGTCGTTGGTCCTTCGTTCGTAGTGGTCATTGTA
TAGTGAGAAAGCTCACCCCTGCCTGCGAGACGAGAAAGCCCTCTTTTACATCACATGAATTGAAA
TGCTACAACCAATTGTTGTTCTTTTGACGATGAACCACTCCGGTACAGACTATACGGAGTAAATT
TTGAGAAAGTGAACAGTCAGTATCGTACTTCAAAGTCCTAACTGTGGCATGTGAAAACAGTCCTT
CCCTTGGTTTTAAGCCTTTATTCTTAAGGTCCGTACAGCTCAGGAATGCTAATGTGAAACCCAGA
CTAGCGGAGCACTATATATACGAAATTTTTGAAAACCCTATTAAAATAAATAGAAAGAAATAGAA
ATAGAAATCGTTTTTTCTATTTATTTTATTTATTTTTCTCTAAAT
Right flanking sequence: Indices 202492 -- 202991
TTATTTATCTAAATATTTATATATTCGTAGTTCTCTACCTCTATTCATAGTAGTACTGCTCCATG
TTAAAGAGGAAAAGATTTCGTCAAGCTAGCAAAGGCCTCTTCTATTGACTAGTTGTCTGGTTAGC
CAGCCGGTAAGACTGTTCTTTCCTCTCTTACTTGGCTAATAGTTGGCAATACCCTTCCCAAGTTA
CTAAAAGGGCGGCTTTCGGCTTTCTGACTACTGGTACTACTGGCTGGCAGACTACTGTAACTAAA
GACCTTTCTTTTCCTTTCTTACTTGACTCTATGAATAGTGACCTTATTCCTCTTCTTTTCTGTCT
TACTAGTTCTGCCTTACTTACTGTCTTGTTCGACTATCCGGTTAGACAGACCTTCTTTACTTGTC
TCTTTCTGCTTCCCTTTCCTACTAGCCTAGCCGTATAGACTAGCCACTATAGCTTCCTTACATCA
GTGACCTCCTTAATCAACTGTACTAATAGCCGTACTAATACCTTC
Found at i:203781 original size:18 final size:18
Alignment explanation
Indices: 203748--203783 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
203738 CCTAGTCTGC
*
203748 TCTGCCTTAGTAGCTTGG
1 TCTGCCTTACTAGCTTGG
*
203766 TCTGCCTTACTTGCTTGG
1 TCTGCCTTACTAGCTTGG
203784 CTTTCTGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.25, G:0.25, T:0.42
Consensus pattern (18 bp):
TCTGCCTTACTAGCTTGG
Left flanking sequence: Indices 203248 -- 203747
GGCTAGAGCAGCTATATGGACCCCTTCCTTAAGCGAGTACAGGAGAATACCTCGCTTGTTTCTGG
TAGGCTTTCAGGCTAGAGAGCCTCTTTCTTCCTTTACTAGGAATAGCTGTCCGAACCTGCTGTAC
TAATCTTCCTTACTAGTAGTTTCATTATGACTAGTCTTTTAAGAAACAACTAATTAAGAGAATTG
ACTTCCTAACTTTTTTGAAGCTTAGGTGAAGAGGAACCGTATTAGTCCGAAGGTGAGTTACGGTC
AGTGGAGCGAAGGTACCCCGCCTAAAGGGGCTTTAGAGTCAGGGGAGGAACGTCTTCATGCCTTA
ATCGATTCTCAAGTGATAGATAAATACCTCTCTTCTTTTTACTAGCCTAGCTGTTATAGATCCCT
TTTTTTTGTCTGTTCTTTTGTCAGCTAATACTGGCATGTTTGACCTTACTAGACTAGCTAGCCTG
ACTTGACTGCTTTAATGAGCTTAGTAGCTAGCCTTCCTAGTCTGC
Right flanking sequence: Indices 203784 -- 204283
CTTTCTGCTTTTAGCAGTTAGTCTTGGCTTTCCGCTTTTGGCATTAGTGCATGTTTGAGCTGACT
TGCCTGCCTTGCTTTCGGCTCTTAGTTGATAAATACCTCTTCCTTTTCTTCCTCTTTGCTTGGCT
TTACCTGCTCTTATTACTAGCTCTGTTAGACTAATAGCATGTTTGAGCTTATTTCCCTGCCTGTC
TGCTGCTTTGTCTGACTATTAGGACTAGGACTAATGAGCTTCCTTTCTTACCGACTAAAGGAAGT
AATAATGACTAAACTAACTTAATAAAATCTTAAGAGCTAGCTGAGTGAGTGTAATCTCTTAGTCC
GAATTCAGTTAGAGGTTAGAGTAGGGAAGAGTACCATTCCTAGTCCGTTGCTAATACGCCTATAA
TGCCAATCATAAGATTGGCAAGCTATATTCCTTAGCCTTATATGCCTTAAAGCCTGCCTTAATGC
CTTTGGCTTTAATTCCTTTAGTCTGCGGCTGCCAATATGCCTACG
Found at i:203820 original size:27 final size:26
Alignment explanation
Indices: 203779--203831 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
203769 GCCTTACTTG
*
203779 CTTGGCTTTCTGCTTTTAGCAGTTAGT
1 CTTGGCTTTCCGCTTTTAGCA-TTAGT
*
203806 CTTGGCTTTCCGCTTTTGGCATTAGT
1 CTTGGCTTTCCGCTTTTAGCATTAGT
203832 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.09, C:0.21, G:0.23, T:0.47
Consensus pattern (26 bp):
CTTGGCTTTCCGCTTTTAGCATTAGT
Left flanking sequence: Indices 203279 -- 203778
AGCGAGTACAGGAGAATACCTCGCTTGTTTCTGGTAGGCTTTCAGGCTAGAGAGCCTCTTTCTTC
CTTTACTAGGAATAGCTGTCCGAACCTGCTGTACTAATCTTCCTTACTAGTAGTTTCATTATGAC
TAGTCTTTTAAGAAACAACTAATTAAGAGAATTGACTTCCTAACTTTTTTGAAGCTTAGGTGAAG
AGGAACCGTATTAGTCCGAAGGTGAGTTACGGTCAGTGGAGCGAAGGTACCCCGCCTAAAGGGGC
TTTAGAGTCAGGGGAGGAACGTCTTCATGCCTTAATCGATTCTCAAGTGATAGATAAATACCTCT
CTTCTTTTTACTAGCCTAGCTGTTATAGATCCCTTTTTTTTGTCTGTTCTTTTGTCAGCTAATAC
TGGCATGTTTGACCTTACTAGACTAGCTAGCCTGACTTGACTGCTTTAATGAGCTTAGTAGCTAG
CCTTCCTAGTCTGCTCTGCCTTAGTAGCTTGGTCTGCCTTACTTG
Right flanking sequence: Indices 203832 -- 204331
GCATGTTTGAGCTGACTTGCCTGCCTTGCTTTCGGCTCTTAGTTGATAAATACCTCTTCCTTTTC
TTCCTCTTTGCTTGGCTTTACCTGCTCTTATTACTAGCTCTGTTAGACTAATAGCATGTTTGAGC
TTATTTCCCTGCCTGTCTGCTGCTTTGTCTGACTATTAGGACTAGGACTAATGAGCTTCCTTTCT
TACCGACTAAAGGAAGTAATAATGACTAAACTAACTTAATAAAATCTTAAGAGCTAGCTGAGTGA
GTGTAATCTCTTAGTCCGAATTCAGTTAGAGGTTAGAGTAGGGAAGAGTACCATTCCTAGTCCGT
TGCTAATACGCCTATAATGCCAATCATAAGATTGGCAAGCTATATTCCTTAGCCTTATATGCCTT
AAAGCCTGCCTTAATGCCTTTGGCTTTAATTCCTTTAGTCTGCGGCTGCCAATATGCCTACGTCT
TTAATGGCATAGTCCGTTAGCCTTATTAGCCAAACTCCCTTCGGC
Found at i:261103 original size:31 final size:31
Alignment explanation
Indices: 261068--261146 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
261058 GCGCGCAGCC
261068 GTTTTCTTGCTTGCTGCTAGCGCGCGCTGTA
1 GTTTTCTTGCTTGCTGCTAGCGCGCGCTGTA
* ** *
261099 GTTTT-TCAGCTTGCAACTCGCGCGCGCTGTA
1 GTTTTCT-TGCTTGCTGCTAGCGCGCGCTGTA
261130 GTTTTCTTGCTTGCTGC
1 GTTTTCTTGCTTGCTGC
261147 CCCTATAGAG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 1 0.03
31 37 0.95
32 1 0.03
ACGTcount: A:0.08, C:0.27, G:0.27, T:0.39
Consensus pattern (31 bp):
GTTTTCTTGCTTGCTGCTAGCGCGCGCTGTA
Left flanking sequence: Indices 260568 -- 261067
TGGAGACAGATGAGAGACTGATGCATCTTAAAGCTTCCCCTTCCGACCAATAGGGAAGATGTAGT
TCCCTTGTTCCAACCCATTCATTGAGTGAGCTGGCCTTGATGGGAGTACAGCTTTAATGGAGTAC
ATGCAATGGAGTATAGCTTTGATGGCCAAGTTCAGTTGAATACGCGGTGGTAAATGAGCTAAAAA
ATATTCTTCTTATATAAAGCATGGGTGGCCTCGGATAAGCGTACTCCAACCCTGCGAAGAAAACT
ACAGGGCAACAAGCGCGAAAACTACAGTGCGCTAACGCGCACTCCGGCTTGAAAGCCGGAGTGCG
CTAGCGCGCCCATGCATGATGAAAAACGGATGCAACAAGCAACGGATTGAGCGCTAGCGCGAAAG
CCGTTGCGCGTTAGCGCGCAGCCAGCAAGCAACGGGTGAGCGCTGACGCGCGAAAGCCGTTGCAA
CAGGCAACCGCTAGCGCGAAAGCCGTTGCGCGTTAGCGCGCAGCC
Right flanking sequence: Indices 261147 -- 261646
CCCTATAGAGTAAGACGTTTTCTCGCTTGTTGCCTCCGCTTGCTTGGACCACAGGCCTAGCTAAA
ACTTCCTATTCTATTTCCCAAGTCTTCTCTCCTAGCTATCTGGATTCCTATCCGTTACTATCAAT
GGCATCTAAAGCTCCTATTGAAAAAAGGCATGGCAAACAACCTAATAGGGGGGCTTCGGAAAGAG
AAGAAGCAAGGCAGGAAGCATCGAATGCAAACAAACCGGGTGAACTGACTGATCTGATCTTTCGT
ATCCGGATTCCTCAACTAATCCAACTAATGCTGATCTATCTCTTGAATGGAAGCTAACAGCCAAG
CATGGCTAAACATCCTAGCTGCAACCAGCAACCATCATTCGGAGGGCGGGCTTTTAGAGGAATTC
GATCTGTTGTCTTAGAAAGGTAGATAGGGACCTTAAAGTATGACCTTTTGTTCAGTGCCCGGGAG
GGCCAAACCGACCGAGAATTCGTATATGAGGGAGTGAGTTACCTA
Found at i:262656 original size:28 final size:28
Alignment explanation
Indices: 262624--262679 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
262614 AAGCCTACGT
* *
262624 GCGCTAGCAACAAG-CAACGGCTAGCGCG
1 GCGCTAACAACAAGAAAACGGCT-GCGCG
*
262652 GCGCTAACAGCAAGAAAACGGCTGCGCG
1 GCGCTAACAACAAGAAAACGGCTGCGCG
262680 TTAGCGCCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.30, C:0.30, G:0.32, T:0.07
Consensus pattern (28 bp):
GCGCTAACAACAAGAAAACGGCTGCGCG
Left flanking sequence: Indices 262124 -- 262623
CAGGCATAAGTAACAAATAGATATGACAGGCCTACGCCTTCAAAGAGAGGGAAAGGGAACAGGAA
AAAGTATAAAGTAAACAAGTGCAATAAAGCGGATAACGGTTGGGATACAGAAAAGGTGATTTATG
GCATGTTAACTGAAGCCGTACCCGCAAGCGAGGGACACCCCCTTCTTAGACTAGAAAGACTTATT
CTGCCTCAAGCGAGCGCCTTTCCTAAAAAGTCCCGAGCCTTAACAACCGTCTTGTGCGGCCTTGC
CTGTCCTTGTTTTAGTCAAACCTATTCTTGTTCCTGTCCGTACCTGGCCTTGCTTGAGTAAGAAA
TAGATATGCCTTTTCCTGTCCGTCCTTGCCTTGCTTTAGGTAAGTCAGTCCAGTCCAGGCCGTCA
AGCGGTCTAGTTTAGTTAATAGGTTGGTTGATATCTCAGTTATTGATAGCAAAGGTCCACGCCTA
ATATGAAAGGGACACGCCTAACAAGCATGCGAATCAAGCCTACGT
Right flanking sequence: Indices 262680 -- 263179
TTAGCGCCGCGCTAGCCGTTGCTTGTTGCATCCGTTTTCTTGCTGCTCTGTAGTTTGATTCGCTT
GCTTTGGTCCGGTATCCCTGCCAGCCATCCTTCTTTGCACGCCCTGCTAAGTACCTTGCCAGCTT
AACCGTTTTGGTGGCCCTATCAGGTAAGGCGGTCTCGATCGATTACTTTTGGTTAATTGGTTAGG
TGTCGATAGCAGCAGAACCCTTTATTTGGTCCATACCACGAAACAAGCAAAGTATGCCCTTTATT
TCACTAGATAGCTAAGGTCCTGTTATACCGTACGGACGCGTGCTTGTCCAGTTTTCCAGGGATGG
CTTCATCAATAACATCTGTCACCGAGAAACGTTTTTACATGGATGTATGGGAACCTTTGGTTCCT
TTTTTGTTTGTAAGTAAGCCCGCAGCATCACTACCAGATCGAAAGTCAGGGTCAGTTTCGGTTCT
AGGTAAAGATCCATAACCACCAGTCCCAGCTCCTTAGCCAACATA
Found at i:268480 original size:22 final size:22
Alignment explanation
Indices: 268439--268481 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
268429 GTTTGTTCCC
*
268439 CGTGAACAACATGCGCAGTTGG
1 CGTGAACAACATGCGAAGTTGG
* *
268461 CGTGAACAATATGCTAAGTTG
1 CGTGAACAACATGCGAAGTTG
268482 AGGAAGAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (22 bp):
CGTGAACAACATGCGAAGTTGG
Left flanking sequence: Indices 267939 -- 268438
GATTGGCTTAGTTTAGCCACTGTCACCACCCGCCACCCTCCCTATCAGTCGGCATTCACTACCGT
GAACCTCCCCATTCGACTCGACGAATAGAAGTGACAAACGTGTATTTCGTCCGCTAGAAGGCTGG
CTGAGTTATGAACCTTTTGGGCTGTTCTGAATGTTGGTGGCATGTCGAAAATGTGGGCTAACACT
AAGATAATGGTTGGGCCGGCGGATTGGCACTACTACTTTTTTATAAGTTTTGGCTTTTGGTCGAA
ACGGTTGGTATGGCTGAGCCGAAGCGAAGGTAGTAGATACACTGAGGTGATCACTACTCGATGTC
GGAAGGTTTGGCACATTGGTTGGCATTGGGCCGGAATTGATTTGGGCATGCTAATGGAAGCAGTC
ATCACTTTTATACGCAATACGGGAAAAACTTCAGTCAGTGTGATGGTCCGGGCACAGTGCTGTCA
TCACATCGGGCTGAAGGAAAAGTTGAAAAGATAAAGTTTGTTCCC
Right flanking sequence: Indices 268482 -- 268981
AGGAAGAGCGAAGCCTGACAGCACTGAGCGCTAAGTTCTTCTAGGAGAGAATGATGCATGTGGTG
TAGATTGGCGACAGAGACCTCAGCTGGCTTAATACTTTACCAATTGGCGATGCAATTGGCAAGTG
AGTAAAGAAAGCGTCACAAGCAACACACTCAAATTTCGTTGGCTTGGCGGAGTAAGCCTTGGCCA
TCTCAAGCAGGTGGACGTTACCTTGGTGGAGACATCGAGGTGAGCTTGGCTCATGTGATCCTTTC
CGAGTACTTGGCTTGTTTTTTTGGGCTTAATCTGTGGTTCCAGAAATGGAGTTGCTATTCTCGAT
TCATACAAGTTTTCGAAACGAGCTTGCCTGCATTACCAGTGAGTGGGTCAATGCTCGTCCGCCGC
CGTAAGCGCGCGCCTCTTCTTAGGCTATCTAGGCCGTCGGGTAGCTGCTCACAGAGTTCCCACCT
CCGTTGACGCCTAGACCGGAACCATATCTCTTCCTCTGGCTTGAT
Found at i:316130 original size:18 final size:18
Alignment explanation
Indices: 316090--316132 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
316080 ACCGCCCTGC
316090 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
316109 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
316126 CATAGTC
1 CATAGTC
316133 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 315590 -- 316089
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GAAGCTCAGAAAGAAGCAACCCTTGATAGCTGCGCCTAGCCTAACCTAGGTTGGGCTAGGCGCAG
CCGTTTTCTTGCTGGGCGCGCTAGCGCCAAACTATACACCAAGGTGGCTTCGCATGCTTGGGCGA
ACACTCGGCCCACCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAG
CACTTTCTAGTGTGAACCGAAGCAAGCAACGGAATGGCGCGAAAGCCGTTGCGCGGCGTTTTCTT
GCTGCGTCACGAGTCTACAAGCCTTTATCATTTCAGTGCTCGCTTCAGTAGGGGCCTTTAGTATT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 316133 -- 316632
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:345758 original size:31 final size:31
Alignment explanation
Indices: 345690--345782 Score: 114
Period size: 31 Copynumber: 3.0 Consensus size: 31
345680 GACTAACTAC
* * *
345690 ATGACTGACTACACTAATAGAAGTATAGCGCT
1 ATGACTGACTACACTAGT-GAAGTATAGAGCG
* *
345722 ATGACTGACTACGCTAGTGAGGTATAGAGCG
1 ATGACTGACTACACTAGTGAAGTATAGAGCG
* *
345753 GTGACTGACTGCACTAGTGAAGTATAGAGC
1 ATGACTGACTACACTAGTGAAGTATAGAGC
345783 CGTATAGCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
31 36 0.69
32 16 0.31
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (31 bp):
ATGACTGACTACACTAGTGAAGTATAGAGCG
Left flanking sequence: Indices 345190 -- 345689
CCGGAAATCAGACCTGAATCGCACAACCAGCTCGCTCCGAAATCAGAAGATCCGGAAGAGACAGA
CCTTGGAACAGATTTCTTTAGATAAAGCGGTCGTCCAGAGCAAAGATTGTATTGTAGTCACGGAA
CGAAGAAGGAATTTCGAGCGAGTGATTCATCATCAATAGTGGCCCACCAAGCCTCAGTTCCAGGA
CATTGAAACTTCTTAAGCCTGAGCCACCAAAGGACGAATCCCGGTCGTTCACGCGTACAAAAATG
CCTTCTTGCAAGAAGCATATTCATCTCGATCTGCAACTATAGAAGGATCTTGAATTGGCTGTACC
CCCACCAGAAAGTGGGTAGTGCCTTTCCCACTCGGTCTTGATATGCGAATCTGAAATCTGAACGA
AGAACTGACTCGAACAGATCACAGGCCCCTGAGCTCCAAAGGAATCAGACCGTCGACTTTCATAG
TGAAAGACGTATAGCACAATGACTGACTACACTAGGACTAACTAC
Right flanking sequence: Indices 345783 -- 346282
CGTATAGCACGGTATAAAGCCGTATAGCGCACTGACTAACTACACTACTATAGTATAGCACGTAG
ACTGACTGACTACACTAGTAGTTACCCATTATTCACCCAGAAGGAACAGGGGAAGGAGGGCGGTC
CGATCAATTTCTATCAAATTGAGAGCATACCACGTCTGTGCCGAATCCTGTGTTTTAAGAGGAGT
AGCCACTTGGCTTTTCCGAAGGTTAACTTCCTTTGATTGAAAACCAAACCTTGGTCTCGTCCATT
ACCATTAGTAGCGGGAGAACGAATCCCGGTGCGGAACCAAATCATCCAGTCACAACGGAATCAGA
AGATTCTCCTTTTCCTATTGATTTTGAACCAACCTCACCTCGCATAGATCACGCCGACCTACCCA
CCCCGTGTGTGGGTGCCCAGTGCATCTCCCTTTTTTTAAACTTCCCCGCTAAAGAACTTCTTTTA
CGCCCACTTCACTTCTTTTACGGATTTTCCTTCTCCAAGCTTCCC
Found at i:354776 original size:4 final size:4
Alignment explanation
Indices: 354763--354795 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
354753 GCGGCATACC
354763 GAAA -AAA GAAA GAAA GAAA GAAA GAAAA GAAA G
1 GAAA GAAA GAAA GAAA GAAA GAAA G-AAA GAAA G
354796 GTTTTGGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 3 0.11
4 20 0.74
5 4 0.15
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
GAAA
Left flanking sequence: Indices 354263 -- 354762
CCATGACGAATCAATTGATTTAATGTAGGCATCGCTCTTTCCTTTGTCTTCCCCCCGATTTTTGC
CCTATCACTAGTGGTTACTCCCGATCCAAAGCACCCCTTTTCCATTCATAGAGAGATCCAATCGT
CAAAATCAATAAAAAGGCCATCATGGACCAAGATCCAAACGGATCAATCTTGTTGGGAGGTACTG
CCCAAGGAAAGGAAAAGGTTACTTCCGGATCAGGGATAATAAATAAAATAGAAACAAGATAAAAT
CGTATATCGAAACGACTTCTGGCATCACCGAAAGGATCGGAACCACATTCGTGGGCCGACAATTT
TTCTGGATAGGTAGAACTATTGGAAGCAAATGGAAAAGGAACACCGAGTGGGATCAAAGAAACTA
GCGGACTGATCACTAAATAGATACAAATAGGTGCAAATTCTGACATCACCACAGCCCACTTCGTT
CTCTCGCTCTGCTCGCGGCGCTCCTTGCTCGCGGAGCGGCATACC
Right flanking sequence: Indices 354796 -- 355295
GTTTTGGAAGAAGCAAACTCCGGCAGCATCAGTGGACAATGCCGGGCGCCGGCGGCGAGCATTCA
TTTTTCCACTTTTTTATCGAGCTGATCCAATAGATCAAATAAGAAATGCTCCTGCATAGATTTGC
CGCCAATGCCTCGGGTATAATCATATACCATCCTAGAAAGACGATAAAAATTTGTTTCATCGGCT
TCTTCATAAAAAAATTCTTGCGAGAGAAGTCGATGGGCGAGGCTTTAAAAATCGACAGCACGCGT
GCCATTACGTGTGCAATAAGGGCTGCAAAAGCCTCGGCCGCCGCAGAAAGTCCGACAATATTTTA
GAATTGCTTCAACTGTAGCGTTCACACATCTCCTTCTGAGTTGGTCGATTTTGTTGGAGGAGGAA
TCATCCGGCGTGCTCCCGGATGGCAGGTTCGTATTCCCACTGGTCGAGGCGGCAGCATCTGCCCC
GCTTCGTGATGAACCCGCCATTTCGAGAACAACTGCGCCTTGACT
Found at i:370491 original size:22 final size:23
Alignment explanation
Indices: 370450--370493 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
370440 GCTCTAAGAA
370450 CTAAGATGATCTATATGTAGTTTG
1 CTAAGATGATC-ATATGTAGTTTG
370474 CTAAGATGATC-TATGTAGTT
1 CTAAGATGATCATATGTAGTT
370494 CGCGTCGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
24 11 0.55
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (23 bp):
CTAAGATGATCATATGTAGTTTG
Left flanking sequence: Indices 369950 -- 370449
TTAGTTTGTTCACACAGGCATGATAGTACTCAACTGCGGAAAACTAGTAAGGATTGTGCCTGCCA
TCAAATTCGTGCCGCATGGCGGGATTACTCTACACTCTATAAATAGAGGCTCGATAAGCCTTCGT
GCTCTAAAAGAAAATCAAAGAATTTGTTTATTAGCACGGTTGATGAACTGAACTATGGATATCGC
AGAAAGGCTCGCTCAAGTTGGAGAGGAGATACAGCACGTAGAGAACGACCTGCGCGACCGCCGGA
GACTCTTAACAGCCTTTTGGAGACACCTGCGCCCGGCGAACCCTGTCGTCGTAGGAGACCGCATG
CGCGCGATGGAACAGGGAATAAAGGGCCTCGAGAGGAGGCTACAAATGCTGCGAAATGAGCAGCA
AGAGCTTTTGGTTCAGGCCTCCTCCGCGGGCGAGCGGCCCGACTCTAACAACTAAGATTATCTAT
ACGCAAAGATGACCTATGTAGTTTGTGTAGTTTTAGCTCTAAGAA
Right flanking sequence: Indices 370494 -- 370993
CGCGTCGACTTAAAAGTTGATAACCTCGTTCTAGTCGATTATGTTAAGCTAAGCTAGCTATTATA
AACGTTCACCTCAAACTATATATCATATTACCTCATTAAACTATATAAGATAAGATAAGCATTCT
CTTGTAGCTGTATTTTTATATTTAAGAATAAGATAAGCATTCTCTTGTAGCTGTATTTATGGATG
GCCGCGGGCTTCTAGCGCACAAGCCCGCGGGCACTTGCTGCCATACGCACACGCCATACTAGCGC
ACAAGCCCCTTTACGGTTTAGGGGCACTTGCTGCCCGCTTCGCACACTTCTAGCGCACAAGCTAA
GGCCCTATTGTTACTTTGTGCTTCAAACCCTTGTAGTAGTAGTCAGAGTGCCGCTAGGCGTGCTA
CCTTAGGGCTTCAGTCAAGCTTGACGCGTGCGTAAAGGGGCTGAGGTCAAGCTTGACGCGCCTAT
TGCGTAAGGTGCGCTGCACAATTGTCAGAAGGTGCCCGACAGGGC
Found at i:371088 original size:32 final size:32
Alignment explanation
Indices: 371046--371151 Score: 112
Period size: 32 Copynumber: 3.4 Consensus size: 32
371036 TCGCTTTTCG
*
371046 CGCTCTCTTTCTCGCTTCGCGCATCCGCGCTC
1 CGCTCGCTTTCTCGCTTCGCGCATCCGCGCTC
* * **
371078 CGCTCGCTTTCTGGC-T--CGC-TTCGCTTTTC
1 CGCTCGCTTTCTCGCTTCGCGCATCCGC-GCTC
*
371107 GCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTC
1 -CGCTCGCTTTCTCGCTTCGCGCATCCGCGCTC
371140 CGCTCGCTTTCT
1 CGCTCGCTTTCT
371152 GGCTCGCTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
28 4 0.07
29 5 0.09
30 13 0.23
31 2 0.04
32 24 0.42
33 5 0.09
34 4 0.07
ACGTcount: A:0.02, C:0.43, G:0.20, T:0.35
Consensus pattern (32 bp):
CGCTCGCTTTCTCGCTTCGCGCATCCGCGCTC
Left flanking sequence: Indices 370546 -- 371045
GCTAGCTATTATAAACGTTCACCTCAAACTATATATCATATTACCTCATTAAACTATATAAGATA
AGATAAGCATTCTCTTGTAGCTGTATTTTTATATTTAAGAATAAGATAAGCATTCTCTTGTAGCT
GTATTTATGGATGGCCGCGGGCTTCTAGCGCACAAGCCCGCGGGCACTTGCTGCCATACGCACAC
GCCATACTAGCGCACAAGCCCCTTTACGGTTTAGGGGCACTTGCTGCCCGCTTCGCACACTTCTA
GCGCACAAGCTAAGGCCCTATTGTTACTTTGTGCTTCAAACCCTTGTAGTAGTAGTCAGAGTGCC
GCTAGGCGTGCTACCTTAGGGCTTCAGTCAAGCTTGACGCGTGCGTAAAGGGGCTGAGGTCAAGC
TTGACGCGCCTATTGCGTAAGGTGCGCTGCACAATTGTCAGAAGGTGCCCGACAGGGCACTCTTG
CGTAAAGGCAGCAAGTGCCCGCTTTCTGGCTCGCTTCGCTTTTCG
Right flanking sequence: Indices 371152 -- 371651
GGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCT
TCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCT
CGTTTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCT
GGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTTCGCTCGCTGGCTTTCGCGCTTAGGCTTTG
AAGCTGGATTGGAACCAGACCTCCGTTTGCTGGGTCGAACAACCACTGCGCTCGAACGAGAGCCT
CTCGTTCCGTGCACGCACAGACATAGATTCGGTCCAGATTCCTTTCCCAAGCCGCCTGGGCAGGG
ATACAAAACTAGAAAGATTGAGAAGCGGTCCAATGCATTGCCATTATGTTTACCATTGGGCACTG
GAATGCGCGTCGATCACGAAAGGGGCATTTGTCTCCGCCGTGCGT
Found at i:371117 original size:62 final size:62
Alignment explanation
Indices: 371020--371164 Score: 290
Period size: 62 Copynumber: 2.3 Consensus size: 62
371010 AGCAAGTGCC
371020 CGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCGCT
1 CGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCGCT
371082 CGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCGCT
1 CGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCGCT
371144 CGCTTTCTGGCTCGCTTCGCT
1 CGCTTTCTGGCTCGCTTCGCT
371165 CGTTTCACTC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.01, C:0.41, G:0.21, T:0.36
Consensus pattern (62 bp):
CGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCGCT
Left flanking sequence: Indices 370520 -- 371019
CGTTCTAGTCGATTATGTTAAGCTAAGCTAGCTATTATAAACGTTCACCTCAAACTATATATCAT
ATTACCTCATTAAACTATATAAGATAAGATAAGCATTCTCTTGTAGCTGTATTTTTATATTTAAG
AATAAGATAAGCATTCTCTTGTAGCTGTATTTATGGATGGCCGCGGGCTTCTAGCGCACAAGCCC
GCGGGCACTTGCTGCCATACGCACACGCCATACTAGCGCACAAGCCCCTTTACGGTTTAGGGGCA
CTTGCTGCCCGCTTCGCACACTTCTAGCGCACAAGCTAAGGCCCTATTGTTACTTTGTGCTTCAA
ACCCTTGTAGTAGTAGTCAGAGTGCCGCTAGGCGTGCTACCTTAGGGCTTCAGTCAAGCTTGACG
CGTGCGTAAAGGGGCTGAGGTCAAGCTTGACGCGCCTATTGCGTAAGGTGCGCTGCACAATTGTC
AGAAGGTGCCCGACAGGGCACTCTTGCGTAAAGGCAGCAAGTGCC
Right flanking sequence: Indices 371165 -- 371664
CGTTTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCT
GGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCT
TCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCT
CGTTTCACTCGCTTCACTCGCTTCGCTCGCTGGCTTTCGCGCTTAGGCTTTGAAGCTGGATTGGA
ACCAGACCTCCGTTTGCTGGGTCGAACAACCACTGCGCTCGAACGAGAGCCTCTCGTTCCGTGCA
CGCACAGACATAGATTCGGTCCAGATTCCTTTCCCAAGCCGCCTGGGCAGGGATACAAAACTAGA
AAGATTGAGAAGCGGTCCAATGCATTGCCATTATGTTTACCATTGGGCACTGGAATGCGCGTCGA
TCACGAAAGGGGCATTTGTCTCCGCCGTGCGTTGCCCTTTTTGCT
Found at i:371192 original size:39 final size:39
Alignment explanation
Indices: 371142--371381 Score: 471
Period size: 39 Copynumber: 6.2 Consensus size: 39
371132 CCGCGCTCCG
*
371142 CTCGCTTTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
1 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
371181 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
1 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
371220 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
1 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
371259 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
1 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
371298 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
1 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
371337 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
1 CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
371376 CTCGCT
1 CTCGCT
371382 TCGCTCGCTG
Statistics
Matches: 200, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 200 1.00
ACGTcount: A:0.05, C:0.41, G:0.18, T:0.36
Consensus pattern (39 bp):
CTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCA
Left flanking sequence: Indices 370642 -- 371141
TATTTAAGAATAAGATAAGCATTCTCTTGTAGCTGTATTTATGGATGGCCGCGGGCTTCTAGCGC
ACAAGCCCGCGGGCACTTGCTGCCATACGCACACGCCATACTAGCGCACAAGCCCCTTTACGGTT
TAGGGGCACTTGCTGCCCGCTTCGCACACTTCTAGCGCACAAGCTAAGGCCCTATTGTTACTTTG
TGCTTCAAACCCTTGTAGTAGTAGTCAGAGTGCCGCTAGGCGTGCTACCTTAGGGCTTCAGTCAA
GCTTGACGCGTGCGTAAAGGGGCTGAGGTCAAGCTTGACGCGCCTATTGCGTAAGGTGCGCTGCA
CAATTGTCAGAAGGTGCCCGACAGGGCACTCTTGCGTAAAGGCAGCAAGTGCCCGCTTTCTGGCT
CGCTTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCGCTCGCTTTCTGGCTCGC
TTCGCTTTTCGCGCTCTCTTTCTCGCTTCGCGCATCCGCGCTCCG
Right flanking sequence: Indices 371382 -- 371881
TCGCTCGCTGGCTTTCGCGCTTAGGCTTTGAAGCTGGATTGGAACCAGACCTCCGTTTGCTGGGT
CGAACAACCACTGCGCTCGAACGAGAGCCTCTCGTTCCGTGCACGCACAGACATAGATTCGGTCC
AGATTCCTTTCCCAAGCCGCCTGGGCAGGGATACAAAACTAGAAAGATTGAGAAGCGGTCCAATG
CATTGCCATTATGTTTACCATTGGGCACTGGAATGCGCGTCGATCACGAAAGGGGCATTTGTCTC
CGCCGTGCGTTGCCCTTTTTGCTTTTTGAGAGAGAGGGGAGGCTTGCACTAGAATGGACTCCCCC
CTTCCCTATTGATCATAGAACAAATGAACGTGGTTAGGAATCGTTAATGGCAAGCAATGGATTTG
CTTTACCTGATCTTCTTTGCCCCTTTCTTCTTAATAGGGGACAACGAGCGGTTACAAAATGTTTT
CACTGGTAGTTCACAGCGGCGACTCGAACTACGTATCCAACCCGC
Found at i:371403 original size:48 final size:48
Alignment explanation
Indices: 371168--371386 Score: 97
Period size: 48 Copynumber: 4.5 Consensus size: 48
371158 CTTCGCTCGT
* * *
371168 TTCACTCGCTTCACTCGCTCTCTGGCTCGCTTCGCTCGTTTCACTCGC
1 TTCACTCGCTTCACTCGCTCGCTGGCGCGCTTCGCTCGCTTCACTCGC
* * * * * *
371216 TTCACTCGC-TCTCTGGCTCGCTTCGCTCGTTTCACTCGCTTCACTCGC
1 TTCACTCGCTTCACTCGCTCGC-TGGCGCGCTTCGCTCGCTTCACTCGC
* * * * ** * * *
371264 -TCTCTGGC-TCGCTTCGCTCGTTTCACTCGCTTCACTCGCTCTCTGGCTCGC
1 TTCACTCGCTTCAC-TCGCTCG-CTGGCGCGCTTCGCTCGCT-TC--ACTCGC
* * * * * * *
371315 TTCGCTCGTTTCACTCGCTTCACT--CGCTCTCTGGCTCGCTTCGCTCGT
1 TTCACTCGCTTCACTCGC-TCGCTGGCGCGCT-TCGCTCGCTTCACTCGC
371363 TTCACTCGCTTCACTCGCTTCGCT
1 TTCACTCGCTTCACTCGC-TCGCT
371387 CGCTGGCTTT
Statistics
Matches: 132, Mismatches: 29, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
47 18 0.14
48 79 0.60
49 2 0.02
50 6 0.05
51 12 0.09
52 10 0.08
53 5 0.04
ACGTcount: A:0.05, C:0.41, G:0.17, T:0.36
Consensus pattern (48 bp):
TTCACTCGCTTCACTCGCTCGCTGGCGCGCTTCGCTCGCTTCACTCGC
Left flanking sequence: Indices 370668 -- 371167
TTGTAGCTGTATTTATGGATGGCCGCGGGCTTCTAGCGCACAAGCCCGCGGGCACTTGCTGCCAT
ACGCACACGCCATACTAGCGCACAAGCCCCTTTACGGTTTAGGGGCACTTGCTGCCCGCTTCGCA
CACTTCTAGCGCACAAGCTAAGGCCCTATTGTTACTTTGTGCTTCAAACCCTTGTAGTAGTAGTC
AGAGTGCCGCTAGGCGTGCTACCTTAGGGCTTCAGTCAAGCTTGACGCGTGCGTAAAGGGGCTGA
GGTCAAGCTTGACGCGCCTATTGCGTAAGGTGCGCTGCACAATTGTCAGAAGGTGCCCGACAGGG
CACTCTTGCGTAAAGGCAGCAAGTGCCCGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCT
CGCTTCGCGCATCCGCGCTCCGCTCGCTTTCTGGCTCGCTTCGCTTTTCGCGCTCTCTTTCTCGC
TTCGCGCATCCGCGCTCCGCTCGCTTTCTGGCTCGCTTCGCTCGT
Right flanking sequence: Indices 371387 -- 371886
CGCTGGCTTTCGCGCTTAGGCTTTGAAGCTGGATTGGAACCAGACCTCCGTTTGCTGGGTCGAAC
AACCACTGCGCTCGAACGAGAGCCTCTCGTTCCGTGCACGCACAGACATAGATTCGGTCCAGATT
CCTTTCCCAAGCCGCCTGGGCAGGGATACAAAACTAGAAAGATTGAGAAGCGGTCCAATGCATTG
CCATTATGTTTACCATTGGGCACTGGAATGCGCGTCGATCACGAAAGGGGCATTTGTCTCCGCCG
TGCGTTGCCCTTTTTGCTTTTTGAGAGAGAGGGGAGGCTTGCACTAGAATGGACTCCCCCCTTCC
CTATTGATCATAGAACAAATGAACGTGGTTAGGAATCGTTAATGGCAAGCAATGGATTTGCTTTA
CCTGATCTTCTTTGCCCCTTTCTTCTTAATAGGGGACAACGAGCGGTTACAAAATGTTTTCACTG
GTAGTTCACAGCGGCGACTCGAACTACGTATCCAACCCGCATCTG
Found at i:376262 original size:90 final size:89
Alignment explanation
Indices: 376107--376281 Score: 316
Period size: 90 Copynumber: 1.9 Consensus size: 89
376097 CTTTGCCGTT
376107 GCAGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGC
1 GCAGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCG-TAGCGC
376172 AACGGCTTGAGCGCTAGCGCGGCTA
65 AACGGCTTGAGCGCTAGCGCGGCTA
376197 GCAGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGC-TACCGCG
1 GCAGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTA--GCG
376261 CAACGGCTTGAGCGCTAGCGC
64 CAACGGCTTGAGCGCTAGCGC
376282 TCATGGAGTT
Statistics
Matches: 83, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
88 2 0.02
90 81 0.98
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (89 bp):
GCAGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTAGCGCA
ACGGCTTGAGCGCTAGCGCGGCTA
Left flanking sequence: Indices 375607 -- 376106
CTGGTACTTGATCGGGCGGGGGGCGGTTTGGTTTCGTGCAACGCCCCCGCAGCAGGAAGAGGCAG
TTGTCATTTGAAAGGCCCCAGAAGGGCGCCCTCGCTCTCTTGGCAAAACGCTTCGAAAGAAGAAC
GTCTCGCCAAGGCCCCGCCCGCCCCCTTTCTTTGCCAGCCGGCCGCCTAGCTCGTTCTTCCATTT
TGAGATCTGGATAGAGTCTCGCTCCGGGGGAAGCATGGATTCTTTAGATCTAAAGAATCCATGCA
GCAAGCTGAAAAACTACAGTGCGCGGATGCGCCCCAGCGAAGAAAACTACAGGGCGCGCTAGCGC
GCCCATGCATGATGAAAAACGGATGCGCGCGCTAGCGCGCAAGCGGCTGCAAAGCCGGCTGCGCG
TTAGCGCAACGGCTTGAGCGCTAGCGCTCAATCCGTTGCTTGTTGCCTGAGAGCAAGCGAAGGCT
GCAAGTTCAGGCGCCCGCTAGGGCGCCGCAACGCGCTTTGCCGTT
Right flanking sequence: Indices 376282 -- 376781
TCATGGAGTTGCTTGTTGCGCTGTAGTTTTCTCGCTTGTTGGTTAGGGGCTTTCTTCGCATGCTC
CGTTTGCACCGTTTGCTGCCTCCGTTTGCTGGCTTCAAAGTGCTAGTTGTAGCGCGCTAGCGCGC
GTACTCTTCTCCTGTTCTACGAATCTACAACTCTCTTTACTGAGCGAGACTCCATCCATATCCCT
ACTAGTGGTTTTTCTGATTTTTCCATTCTATGATTTGTTTGACAGCTTAAACTAGGCTCCACTTT
AGATAGGGTTTTCGGTCTTAATCAAGATAGGTCAGGGGCGCGTCGGAACGGTCGGTAGCTGCTTA
GTCTCATCCGAGAGTCCAATCTCTTTGTACTGCTTTTGTGTCTTTGAATAAAAAGAAAGAAGGGG
GTCGATTTAGGCTCCTTCCCTTCCACTGCATAGCTGCGCTAGCAGGTACTACGAGCCCTCTGTCC
CACGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGAAAAC
Found at i:411104 original size:16 final size:16
Alignment explanation
Indices: 411064--411105 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
411054 TATCCATATA
*
411064 TCTGGCTATCTATCTT
1 TCTGGCTATCTATCTG
* *
411080 TCCGTCTATCTATCTG
1 TCTGGCTATCTATCTG
411096 TCTGGCTATC
1 TCTGGCTATC
411106 AGCGCAGATC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.29, G:0.14, T:0.45
Consensus pattern (16 bp):
TCTGGCTATCTATCTG
Left flanking sequence: Indices 410564 -- 411063
GCTTAACACATGCTGTTTGAACTTGTGATCAGCAAATTACATGTTTGAAAATCCAAAAGCAGTAG
GGCTCGCTAGTGAGGCTAGTGAGACTGAATCCCACCCCCGACTGCCAAACATGAAGCTTGCTGGC
AAGAAGGCGCCCTCCCTCTTCAGTAGCGCTTCTTGGGGGACTCCCCGTCAAGATCCCCGACCGAT
CCAAAAGTCAAACCTCGCTTTCGGCGGTTCCTCGTTGTCAAACATAAGCCAATAAGGGCGGGTCC
CGGGTAAATGCGATCCCTGCCCGGGGCCTAAACTCCCCCAAACCGCCTCCCTAACCCCCCCGGGC
GGCTTCTGCGGGCACCCCTAAGCCCCTTAAGCCTTCATCTACTCTACTCTACATCCCTTAGCCCG
GCGGGAGCGGTCCACCCTTCGATCTTTACATCGCCCTTCCTTAAGTTTTGTTCAATCTGGCAATT
CATCTTATCTTAACTTACCTATCCATCCTTCTATCTATCCATATA
Right flanking sequence: Indices 411106 -- 411605
AGCGCAGATCCGACAATAGTAGGTGCCGCTATTCAGAAACCCATTGGCCCTTATTTTCGCCTCGG
GGTAGCTAGCCTTCTACCTTTTCCCCTTCTATATATTCTTCTATCTATCTATCTATCTATCTTAT
CTTTCTTCGGCCTTATAAGATATCCGCGATGGAGCACCCGCCTAATAGCTGAACCTATTTTTGCG
GCTTTTTCTCATTAAGTTTTTGGCCTATTTTTAAACCTTGGTTGCGTTGTGTTTGTCTACTTGAC
TTCTGGATCCGGCCCCCAGGCCTCGGAGCCCTGGAACCCAGATCCAGAAGGCCAAATCAAAAAAC
AATAGGCTAAAGGGCGTGGGATTCCGGCCTTATATAGGAAAGATGGGAGAGGGATGCCGTCTTTC
TGAAACAAGGCAAAATATTTAATAAACCGGCCCTACAGGCTTGCTCTTCAGCAAGCTGTAAAACA
AGCAAGGAAGACTAGTGAGCGAAGCGATCTACTAGGCTTCCGATA
Found at i:416461 original size:12 final size:12
Alignment explanation
Indices: 416444--416481 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
416434 AGGGAAGAGG
*
416444 AAGCTAGTCCGA
1 AAGCTAGTCCAA
416456 AAGCTAGTCCAA
1 AAGCTAGTCCAA
416468 AAGCTAGTACCAA
1 AAGCTAGT-CCAA
416481 A
1 A
416482 CTAGAGAAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (12 bp):
AAGCTAGTCCAA
Left flanking sequence: Indices 415944 -- 416443
AGGGATGGACTATCCGATTTCTTTATCCGAGATAGAATCGGTTGAGCGAATAAAGCTAGCTACTC
TTGAAGTGGCAGGGGATGCCCCGGAGGGCTTGCTTGGTGTTCTCCATAACTCGGTATGTCATCGG
TATTTTTTCCTCTTTCCGCTTGGCGAAGCATGAAGGGAGATAAGGAAAGAAAGCTCACATCCCAG
AAGCACCAGAATAAGCCTAACAATAACTACTAATAAAGAGCATTCTCCCCTGACTCTAATGCCCC
TCTAAAGAGGGTACCTTCGATCTACTTACTTGAACCAGCTTAAAGGCGGTACCAAGATTCCATTC
ATCAGTCAGTTTGCTAAAAGGGAAAGGAAGGTCTTTAGCCAGAGAGAAGCCCTACGCTGAGGGGA
TACTAAAACCAGAGGGAAGTCGTCTCCTCCGAGTGCAGTGGTGTTCTCCTTAAATCACTAGAATT
TGGGATTATCTTTTCTTGCCTTATGGTGAAGCACAAGGGAAGAGG
Right flanking sequence: Indices 416482 -- 416981
CTAGAGAAGCAAGGCTTAATAACAACCATTCCACTAGCCTTAACTGACTATAATCATTCCCAAGG
TGCTTACTAATAGGGCTAGCTAGCGGCGCCCTATTAGGGGGCGCGCAACGAGCAAGCAACGGCGC
GCCGCTCGATCGGCGCGCTAGCGCGCGCATCCGTTTTGAAGCTGGCTGCTATGCGACTAGCGCGC
TTGCGTTTTTCCGCAGGCTGCTATAAGCGCTAGCGCGCGTACTCTTCTTCCCCTATAACGTGCTT
CTAGCGCTCTGCAACCTGAGGATGAGCTATTACTAGATCCCAAGAATTGCGTAATCCCTCAAAGC
CTTGCCAATCACTTCAGCAGAGTACTTCACTCAAAGTGAAGCAAGCTCAAATAAAGTTAGGGGGT
CGTTAGACCGACCACAAAAGATACTTTCTTTCTAAGAGGCGGCTAAGGGAACCGTAAAGGACGTC
CTCAAGAGATCCATATACGCTAGGGCGGTGACCCAAACAGACTTG
Found at i:447434 original size:90 final size:90
Alignment explanation
Indices: 447281--447453 Score: 346
Period size: 90 Copynumber: 1.9 Consensus size: 90
447271 TTGCCGGAGT
447281 AGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGCAA
1 AGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGCAA
447346 CGGCTTGAGCGCTAGCGCGGCTAGC
66 CGGCTTGAGCGCTAGCGCGGCTAGC
447371 AGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGCAA
1 AGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGCAA
447436 CGGCTTGAGCGCTAGCGC
66 CGGCTTGAGCGCTAGCGC
447454 TCATGGAGTT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (90 bp):
AGCAAGATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGCAA
CGGCTTGAGCGCTAGCGCGGCTAGC
Left flanking sequence: Indices 446781 -- 447280
GGCATCAAGTCGGAAGAGTGTTGCAGAAACATCTGCACTTCCCGGTCCTCCTTCCTAAAAAGCCT
TTCCGATTGCCTCCGTCTGACTACGGCATCCCACCGATCCTCGCATCGGCTCTGCTAGTTGGCTT
TGCTATCAAGGCATAGCATTCTATGGACTCTTCCACCACGTCCAGAAATGGTATGCCAACACGTT
TTCTCCTTAGCCAACCAAGCGAGAAAACTACAGTGCGCGCTAGCGCACGAAGCATGATGAAAAAC
GTGAGCAGCAAGAAAGCCGGATGCAACAAGCGAGAAAACGTAAGTGCGCTAACGCGCACTCCGGC
TTTCGAGCCTACTTGCTTGAGCGCTAGCGCGGCGCGGTAGCGCAGCCGCTCGTTAGCGCCGCGCT
AGCGCTCAATCCGTTGCTTGTTGCTAGCGCGCCAATCGAGCGGCGCCGCTGCAAGCTCCGGCAGC
AAGTTCAGGCGCCCGCTAGGGCGCCGCAACGCGCTTTGCCGGAGT
Right flanking sequence: Indices 447454 -- 447953
TCATGGAGTTGCTTGTTGCGCTGTAGTTTTCTCGCTTGTTGGTTAGGGCGCTCGTCCCGACCGGA
GCTAGGTTTACCGATGACGGCCGGTGCTTATACAGTAGAGAAAGGTCTATTTCGTTCATCGGGGG
GCTCGGGTTCGTCGTAGGAATCTTTCTGGTTCCCGCTCCCTCCTTCCCGGCCCTCTTGCTTACTA
TGAGTTCGCTTCCTACGAGCCCATGCGCGATCGTGCAAATATAGAGGGTTCGGTATTACGAATCC
AGATACTATGGGATTGGACATCTGGCGATACACAACCTCCCTCCCGGTGGGACAACCGGTAGTAC
GATTCAAGGGAATTGGACACTCCCGGAACGCATATACCAAAAACTAGAGTAGCGAGGGCCGCGGC
CCTCTCCCTTCTTTAGTAGCAATGTTCACTACTGCCGCTGTTGCGGAGCACCCGCCCGTAGGTTT
TAGTAGACATCGGTACGATTGTAGGATGTTAGAACTCATAAGGCA
Found at i:456327 original size:20 final size:19
Alignment explanation
Indices: 456289--456327 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
456279 CAAGCGAGAA
* *
456289 AACGGCTGCGCGTTAGCGC
1 AACGGCTGAGCGCTAGCGC
456308 AACGGCTTGAGCGCTAGCGC
1 AACGGC-TGAGCGCTAGCGC
456328 GGCTAGCAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (19 bp):
AACGGCTGAGCGCTAGCGC
Left flanking sequence: Indices 455789 -- 456288
TTGACCTTCTTTTGTAGATAGAATCTTCAATGAGTGGAAACAAGACCAGACTTGCTCTGCAGTAC
GAGCCTCATACAGAGCCGCGCCCCTTTAATATGATGAGAAGAAGCCCTCTTTTCTTTTCCGCACC
AATCCTTATTTACTACTACATCTTTTTTTGGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTTT
AACCTAATGGTCGCAGGTTCAAGTCCTGCTATACCCAAACCTACCTTACACTCTACTATGAGTAA
GGATGCGTAGTAGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCGACTTCGCTCGT
TGGGTGAGGTAAGGAGTAGTATCAGAGTGGCTCGGTCATCGATAGGCCTCTCCTTATTCATTCTA
TAGGGCGGGGCTGCGGACCTACAATCCTGCAAACGGGGTTTAGTCAAGTCGAAAGCAGCAAACGG
TGCAAACGATGCATGCGAAGAAAGCCCCTAACCAACAAGCGAGAA
Right flanking sequence: Indices 456328 -- 456827
GGCTAGCAGCAAGATGAAAAACGGATGCACGCGCTAGCGCGCTTCATCCAGCCGTTGCGCTGGCT
GCGCTACCGCGCCGCGCTAGCGCTCAATCCGTTGCTTGTTGCGCTGTAGTTTTCTCGCTTGCTCG
GATGCGCTACCGCGCTCACGTTTTTCATCATGCTTCGTGCGCTAGCGCGCACTGTAGTTTTCTCG
CTTGTTTCTTCGCTCCGTAGTTTGCTGGCTAGAAAGGCGAGGCAAGGGGCTCTCCATCTCTAGGA
AGATTGTGTCCAGGATCTGGTAATCTAAGCGTTGCTTCTTCTGGTCGGCTCGTATTAGCCTGTGC
TTTATTACAGGCCCCCCGTTCCTTTAGTCTTTTCAACGGTACTTTAATCTTAAGTCGCGGTCATG
TCTCGCCCCCCCCAGTATAGTGACCGGTTCCATGTTTCCCCCGAATTTAATCAGTTCCAGGCTCA
AGTGCCTGCTCATCCATCTTCATTCCAAAGGCGAACATCTCCATT
Found at i:464753 original size:34 final size:32
Alignment explanation
Indices: 464710--464874 Score: 91
Period size: 31 Copynumber: 5.2 Consensus size: 32
464700 GTTGGTGCGG
*
464710 TATTGCTTACTTGTCCTAGCCGGTCTGTTCGCGC
1 TATTGCTTACTTGTCCTAGCC--TCTCTTCGCGC
464744 TATTGCTTACTTAG-CTCT-G-CTCTCTTCGCGC
1 TATTGCTTACTT-GTC-CTAGCCTCTCTTCGCGC
* * *
464775 TATTGCCTACTTCTCCTAGCC-CT-TCCCGCGC
1 TATTGCTTACTTGTCCTAGCCTCTCT-TCGCGC
* **
464806 TATTGCTATAGCAT-T--T-G-GGCTCTTCGCGC
1 TATTGCT-TA-CTTGTCCTAGCCTCTCTTCGCGC
* * *
464835 TATTGCCTACTTCTCCTCTG-CTCTCTTCGCGC
1 TATTGCTTACTTGTCCT-AGCCTCTCTTCGCGC
464867 TATTGCTT
1 TATTGCTT
464875 TGTTCCTCTG
Statistics
Matches: 103, Mismatches: 13, Indels: 32
0.70 0.09 0.22
Matches are distributed among these distances:
27 2 0.02
28 3 0.03
29 14 0.14
30 6 0.06
31 36 0.35
32 22 0.21
33 3 0.03
34 14 0.14
35 3 0.03
ACGTcount: A:0.10, C:0.33, G:0.18, T:0.39
Consensus pattern (32 bp):
TATTGCTTACTTGTCCTAGCCTCTCTTCGCGC
Left flanking sequence: Indices 464210 -- 464709
AGGGCAGATAACGATACTTGACCGTGAATGTTTGTTCACTTGTGTCATTAGGGAACTCTAGACTT
GCTGCAAGTTGAGCCATAGCGTTGGCTTCGGAATTGAGTCCCCTTGGAACATGGACGAAATTAAC
ATCATTGAAGAAGTGGAGTTTGTCCAATTTTTCTTCTTGTAAGTAGCCAAAGTTGCCTCCGTTGC
CTTGTAATCCCCTGTGATCACCAGTTGTGAATCTCCTTTAAACACCACTGTTGGCAACTGGAGAG
CTATAGCCAACTCAACAGCAATCAACAGAGCCTCATACTCGGCAACATTGTTCGTGCACGGGCCG
ATATGAATGCCTCTGTCCGGACGGGGAAACAATCGTAATGCCAGCTCCGGAGCCATCAGTCTGCA
CTGACCCGTCGAAGTAGACTTCCCATGCTAGCCCCCCCGCGCTATTGCATAGCTAGGGGAGCGAG
CCTAGTGGTTCACTTGATAGAAGCACTAGGTGAGCGTTGGTGCGG
Right flanking sequence: Indices 464875 -- 465374
TGTTCCTCTGTCCTCTGCTCTCTCTTCGCGCTAAGCCGAGTGCTTCACTTGATAGAAGCACGAGG
CGCGCTATAGCTATTGCTTGCTCTGCTCTCTTGCTTGCTTCTTTGTTTTGTTTGCTAAGTATCTC
CTTAGACGCTTTCTTTGAGTTGAGTAAAGCAGGAACTTTCCCTTAGGTCTAATGCCTGAGGAGTG
AGCCGAGTGCTTCACTTGATAGAAGGACTCGGTGAGCGTCTTTCAATGCCTTAGTTCTTCCCCGC
TTCTCTGGCGCGGTAGGAGCTTTCTTTGCTGTCTTTTTGCTATCGCGCAGTGTTCCTTCATGCCT
GTTGGCTTAGGTGCGCTATTGCTATTGGTTGGCTATTGTTCTTTCGCGCTGTTATTGTTTGCTTA
GGTTCTCTTTCGCGGTAGAGCCTTATGTGTTCTAGCCTATCGCGTAGAGGCTTATGAGCTCTGTT
CGCGGTAGGAGCCTTTTTTGCTGTCCTTCTGCTATCGCGCAGTGT
Found at i:464775 original size:31 final size:31
Alignment explanation
Indices: 464737--464872 Score: 115
Period size: 31 Copynumber: 4.4 Consensus size: 31
464727 AGCCGGTCTG
*
464737 TTCGCGCTATTGCTTACTTAGCTCTGCTCTC
1 TTCGCGCTATTGCCTACTTAGCTCTGCTCTC
464768 TTCGCGCTATTGCCTACTT--CTCCTAGC-C-C
1 TTCGCGCTATTGCCTACTTAGCT-CT-GCTCTC
* **
464797 TTCCCGCGCTATTG-CTA--TAGCATTTGGGCTC
1 TT--CGCGCTATTGCCTACTTAGC-TCTGCTCTC
**
464828 TTCGCGCTATTGCCTACTTCTCCTCTGCTCTC
1 TTCGCGCTATTGCCTACTT-AGCTCTGCTCTC
464860 TTCGCGCTATTGC
1 TTCGCGCTATTGC
464873 TTTGTTCCTC
Statistics
Matches: 84, Mismatches: 8, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
28 1 0.01
29 16 0.19
30 12 0.14
31 34 0.40
32 20 0.24
33 1 0.01
ACGTcount: A:0.10, C:0.35, G:0.17, T:0.38
Consensus pattern (31 bp):
TTCGCGCTATTGCCTACTTAGCTCTGCTCTC
Left flanking sequence: Indices 464237 -- 464736
ATGTTTGTTCACTTGTGTCATTAGGGAACTCTAGACTTGCTGCAAGTTGAGCCATAGCGTTGGCT
TCGGAATTGAGTCCCCTTGGAACATGGACGAAATTAACATCATTGAAGAAGTGGAGTTTGTCCAA
TTTTTCTTCTTGTAAGTAGCCAAAGTTGCCTCCGTTGCCTTGTAATCCCCTGTGATCACCAGTTG
TGAATCTCCTTTAAACACCACTGTTGGCAACTGGAGAGCTATAGCCAACTCAACAGCAATCAACA
GAGCCTCATACTCGGCAACATTGTTCGTGCACGGGCCGATATGAATGCCTCTGTCCGGACGGGGA
AACAATCGTAATGCCAGCTCCGGAGCCATCAGTCTGCACTGACCCGTCGAAGTAGACTTCCCATG
CTAGCCCCCCCGCGCTATTGCATAGCTAGGGGAGCGAGCCTAGTGGTTCACTTGATAGAAGCACT
AGGTGAGCGTTGGTGCGGTATTGCTTACTTGTCCTAGCCGGTCTG
Right flanking sequence: Indices 464873 -- 465372
TTTGTTCCTCTGTCCTCTGCTCTCTCTTCGCGCTAAGCCGAGTGCTTCACTTGATAGAAGCACGA
GGCGCGCTATAGCTATTGCTTGCTCTGCTCTCTTGCTTGCTTCTTTGTTTTGTTTGCTAAGTATC
TCCTTAGACGCTTTCTTTGAGTTGAGTAAAGCAGGAACTTTCCCTTAGGTCTAATGCCTGAGGAG
TGAGCCGAGTGCTTCACTTGATAGAAGGACTCGGTGAGCGTCTTTCAATGCCTTAGTTCTTCCCC
GCTTCTCTGGCGCGGTAGGAGCTTTCTTTGCTGTCTTTTTGCTATCGCGCAGTGTTCCTTCATGC
CTGTTGGCTTAGGTGCGCTATTGCTATTGGTTGGCTATTGTTCTTTCGCGCTGTTATTGTTTGCT
TAGGTTCTCTTTCGCGGTAGAGCCTTATGTGTTCTAGCCTATCGCGTAGAGGCTTATGAGCTCTG
TTCGCGGTAGGAGCCTTTTTTGCTGTCCTTCTGCTATCGCGCAGT
Found at i:464884 original size:30 final size:31
Alignment explanation
Indices: 464758--464872 Score: 96
Period size: 32 Copynumber: 3.7 Consensus size: 31
464748 GCTTACTTAG
464758 CTCTGCTCTCTTCGCGCTATTGCCTACTTCTC
1 CTCTGCTCTCTTCGCGCTATTGCCTA-TTCTC
* **
464790 CT-AGC-C-CTTCCCGCGCTATTG-CTA-TAGC
1 CTCTGCTCTCTT--CGCGCTATTGCCTATTCTC
* * **
464818 ATTTGGGCTCTTCGCGCTATTGCCTACTTCTC
1 CTCTGCTCTCTTCGCGCTATTGCCTA-TTCTC
464850 CTCTGCTCTCTTCGCGCTATTGC
1 CTCTGCTCTCTTCGCGCTATTGC
464873 TTTGTTCCTC
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
28 3 0.05
29 14 0.22
30 8 0.13
31 15 0.24
32 23 0.37
ACGTcount: A:0.09, C:0.37, G:0.17, T:0.37
Consensus pattern (31 bp):
CTCTGCTCTCTTCGCGCTATTGCCTATTCTC
Left flanking sequence: Indices 464258 -- 464757
TAGGGAACTCTAGACTTGCTGCAAGTTGAGCCATAGCGTTGGCTTCGGAATTGAGTCCCCTTGGA
ACATGGACGAAATTAACATCATTGAAGAAGTGGAGTTTGTCCAATTTTTCTTCTTGTAAGTAGCC
AAAGTTGCCTCCGTTGCCTTGTAATCCCCTGTGATCACCAGTTGTGAATCTCCTTTAAACACCAC
TGTTGGCAACTGGAGAGCTATAGCCAACTCAACAGCAATCAACAGAGCCTCATACTCGGCAACAT
TGTTCGTGCACGGGCCGATATGAATGCCTCTGTCCGGACGGGGAAACAATCGTAATGCCAGCTCC
GGAGCCATCAGTCTGCACTGACCCGTCGAAGTAGACTTCCCATGCTAGCCCCCCCGCGCTATTGC
ATAGCTAGGGGAGCGAGCCTAGTGGTTCACTTGATAGAAGCACTAGGTGAGCGTTGGTGCGGTAT
TGCTTACTTGTCCTAGCCGGTCTGTTCGCGCTATTGCTTACTTAG
Right flanking sequence: Indices 464873 -- 465372
TTTGTTCCTCTGTCCTCTGCTCTCTCTTCGCGCTAAGCCGAGTGCTTCACTTGATAGAAGCACGA
GGCGCGCTATAGCTATTGCTTGCTCTGCTCTCTTGCTTGCTTCTTTGTTTTGTTTGCTAAGTATC
TCCTTAGACGCTTTCTTTGAGTTGAGTAAAGCAGGAACTTTCCCTTAGGTCTAATGCCTGAGGAG
TGAGCCGAGTGCTTCACTTGATAGAAGGACTCGGTGAGCGTCTTTCAATGCCTTAGTTCTTCCCC
GCTTCTCTGGCGCGGTAGGAGCTTTCTTTGCTGTCTTTTTGCTATCGCGCAGTGTTCCTTCATGC
CTGTTGGCTTAGGTGCGCTATTGCTATTGGTTGGCTATTGTTCTTTCGCGCTGTTATTGTTTGCT
TAGGTTCTCTTTCGCGGTAGAGCCTTATGTGTTCTAGCCTATCGCGTAGAGGCTTATGAGCTCTG
TTCGCGGTAGGAGCCTTTTTTGCTGTCCTTCTGCTATCGCGCAGT
Found at i:465297 original size:27 final size:27
Alignment explanation
Indices: 465266--465344 Score: 65
Period size: 27 Copynumber: 2.9 Consensus size: 27
465256 GTTTGCTTAG
*
465266 GTTCTCTTTCGCGGTAGAGCCTTATGT
1 GTTCTCTTTCGCGGTAGAGCCTTATGA
* *
465293 GTTCTAGCCTATCGC-GTAGAGGCTTATGA
1 GTTCT---CTTTCGCGGTAGAGCCTTATGA
465322 G--CTCTGTTCGCGGTAGGAGCCTT
1 GTTCTCT-TTCGCGGTA-GAGCCTT
465345 TTTTGCTGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 12
0.71 0.09 0.21
Matches are distributed among these distances:
24 2 0.05
25 4 0.10
26 3 0.07
27 13 0.32
29 13 0.32
30 6 0.15
ACGTcount: A:0.14, C:0.23, G:0.29, T:0.34
Consensus pattern (27 bp):
GTTCTCTTTCGCGGTAGAGCCTTATGA
Left flanking sequence: Indices 464766 -- 465265
TCTTCGCGCTATTGCCTACTTCTCCTAGCCCTTCCCGCGCTATTGCTATAGCATTTGGGCTCTTC
GCGCTATTGCCTACTTCTCCTCTGCTCTCTTCGCGCTATTGCTTTGTTCCTCTGTCCTCTGCTCT
CTCTTCGCGCTAAGCCGAGTGCTTCACTTGATAGAAGCACGAGGCGCGCTATAGCTATTGCTTGC
TCTGCTCTCTTGCTTGCTTCTTTGTTTTGTTTGCTAAGTATCTCCTTAGACGCTTTCTTTGAGTT
GAGTAAAGCAGGAACTTTCCCTTAGGTCTAATGCCTGAGGAGTGAGCCGAGTGCTTCACTTGATA
GAAGGACTCGGTGAGCGTCTTTCAATGCCTTAGTTCTTCCCCGCTTCTCTGGCGCGGTAGGAGCT
TTCTTTGCTGTCTTTTTGCTATCGCGCAGTGTTCCTTCATGCCTGTTGGCTTAGGTGCGCTATTG
CTATTGGTTGGCTATTGTTCTTTCGCGCTGTTATTGTTTGCTTAG
Right flanking sequence: Indices 465345 -- 465844
TTTTGCTGTCCTTCTGCTATCGCGCAGTGTTCCTTCATGCCTCATTTCGGCATAGCTGTCCACAA
ACTGAACAGGATATCGAGATTACTGTATCCGCATGCCTACCCCTACCTTCTATCAACATCAATTT
ACATAAACAAACCAAAGGCGTCAGCTCAAAGTAGGAACCGCCCCTGCACATCCGAAGCGAGTGAT
TTTGCTAAACCCTTAGCTGCGCCCCCTTGGCTAAAAGTTTGCTACTGCATGCGGCCTACTTCTGC
TTTTACTAAAAAAAGGATAAAGTGTTTGAGTGCATGATATAGCGCGGGGGTGGCAATAGTGCTTC
GTTTTAGTGCTGCTTTAGTGAAGGCAATTGAGCCTGTTAGCGGCCGCTACAATTGTAGCGATAGT
CGGGCAGCAAGCGCCGGTCCTAGCCCGGCAGCAGCCCTTTTCTCATCCTTTCTGGGACCATGGAG
CAGTGCCTGAGAAGGTCGAGTAGCTCTAATTGCGAAGTTCGTTCT
Found at i:490659 original size:21 final size:22
Alignment explanation
Indices: 490627--490681 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
490617 CAAGAATCGA
* *
490627 AGACTACGGCTTACAAGTCAA-
1 AGACTACAGCTTACAACTCAAT
* *
490648 CGACTGCAGCTT-CAACTCAAT
1 AGACTACAGCTTACAACTCAAT
490669 AGACTACAGCTTA
1 AGACTACAGCTTA
490682 TTAGAACTCA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (22 bp):
AGACTACAGCTTACAACTCAAT
Left flanking sequence: Indices 490127 -- 490626
CTTACTCAACCTAAAGAGATATTGCCATCGAGACACAATGCTAAATTTGGATGGGCGTAGACCAG
GCAGGCTAGGAAGTAGAGCTAACCTAAGCAGGAAAAGATCTTTACAGAGGGGACCCGGTGAGGGA
GTGGGAAGAAAAGAGAGGGAATGGTATAGCACTATAGGGAATATGGAAACATATAGGAATTGGCA
TAGTTGCATAAATAGGAATTAGGAAGCATATGGGAATGCCATAACAGAGATCCACTAGAGCTTAT
GCCAAGGATGACTTTCCCAACACTAGAAGTCCTACTCATGCTTGTGAAAAAGAGGAAGATCGCTA
ATTACAGGCAGTGTGTTCCACCTATGAGAAGATCAATTGAACTGGCCTCTGGCTTAAGGAGCATA
TAAACGACAAACTAAGCAGAAGCGCGTAGACTCAAAAGAAGGGAGAGGGGCAGAAGCTTCCTCTT
CTATTCAGCAAGGGAAGTCATCTACTCTGCCAAGGCAAGAATCGA
Right flanking sequence: Indices 490682 -- 491181
TTAGAACTCAACGACTTTCTCAACTAGAAGTCTCCTACTCATGTTTGAAGGGGATATCGCTAAAA
GGGGGCCAACTAGCAATCCTGTTACAGGCGGTGGTGTATGTATTTCCAATGTATTTCCACTTATT
CGAGGGAAAAAAAACCTCTGGTTTAAGGAAAAAGATGGACATATAAACTAAGCGACATCCAACAG
AAGCCTAGGCTCGAAAGAAGGAGAGAGAAGAGGCATCTGACTCATAAGCTACTAGCACGAAAGCC
TTGCCAACTACGTCTACGTTACTTACTAGCTAGCCTAACAAGAGAAGTACTGGCCAATGGAAGTA
CTTACTTAGCCTACCGAGCCTATCAATAATAGAGAGGCGGGCAGAGAGCCAGCTAAGCCATATTT
ACCGAGTTGAATGAATGTATGTGGATTGGACGGCAGATCAGGGCAAGTTAAAGAGCATGTGAAAG
CAGAACTTGTAAAAAGACCCATAAGAGGGCTTGAACTAGCGAGAT
Found at i:491649 original size:14 final size:14
Alignment explanation
Indices: 491626--491655 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
491616 CTGACCCATG
*
491626 AGACCGATTAAGGA
1 AGACCAATTAAGGA
491640 AGACCAATTAAGGA
1 AGACCAATTAAGGA
491654 AG
1 AG
491656 GGGAACTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.27, T:0.13
Consensus pattern (14 bp):
AGACCAATTAAGGA
Left flanking sequence: Indices 491126 -- 491625
GCATGTGAAAGCAGAACTTGTAAAAAGACCCATAAGAGGGCTTGAACTAGCGAGATAGGCTCAAA
AATCGGCAATTTCATTGATAAGGTTTTCCGCAGTTGACCGGGAAGGGCTGGAGGGCAGATTCCAC
CGATGAAAGAAGCCAGGCCACATAATACTCTCTAGGAATGGACAGAAGAGGCGAAGGGATTCGCA
CACTAGCAGGGCCAATCCGCGATACTTTTACATTTAGACTATACAAGGAATTTTCTGAATAGGAC
ACGAGCGGGTACTTTCAAGCCTATGTGACCAATGCACTTATGCTGCCTTCACTCAAAGGAAAGCA
CTTTCAAAGAAGCAAGGGATGAAGGGGAGGATTTGTCAAAAGAAATCGATTCACTAAGCTAGCTT
AACTCTCTTTCTACTTGAACTAGAGGAGCGGGACGAGCGTCTTCAGGGGCTTACTACAAAAGAAA
GGCTATTTGATATCCTTTTTCCAGGCCCAAGTACTCTGACCCATG
Right flanking sequence: Indices 491656 -- 492155
GGGAACTAATTCCAGATATCGATTAACTGCTTGCCAGCCTATCCCTAGACCGACGGATTGACCAG
TTGACCAGGCAGGAAGACCGAGACTAATAAAGACAGGAGAGACCGATAGAGTTGAACAGACAGCT
GACAGCTCGCGATTGCAAGAGATAGGGGAAAAAAGACAGATGGCGCACAGATTGACTTATTGCTG
CCTATCGACCTCTGCTGCTGCCTGTTACTAAGGAAGGGAAGAGAACGGATTGAGTCAGGACACGA
TCGATTGAGACAGAAGGGAAGCGCTAAAGACAGCAGGAAGATTGCATTAACAAAGCAACGTATAC
AGATAGAGATGAGCGTTTGCGCATTGATACCGATACAAAGACAAGGGAAGGAGATTAACCCTTTG
CCATAGACCTATTGCGAGAGCTCGACGACCGTTTATTGGACAGAAAGGCGGGCAGGGCAGATGCT
ACTAAAATAAGGCCTATCTGAGCATTTTCATTGACCTATAGTACC
Found at i:497901 original size:41 final size:39
Alignment explanation
Indices: 497856--497942 Score: 122
Period size: 41 Copynumber: 2.2 Consensus size: 39
497846 TAGTTTTCTC
**
497856 GCTTGTTGCAACGGCTTTCGCGCGTCA-GCGCTCAATCCGTT
1 GCTTGTTGCAACGGCTTGAGCGCG--AGGCGCTC-ATCCGTT
497897 GCTTGTTGCAACGGCTTGAGCGCGAGGCGCTCATCCGTT
1 GCTTGTTGCAACGGCTTGAGCGCGAGGCGCTCATCCGTT
497936 GCTTGTT
1 GCTTGTT
497943 CGGTTAGGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
39 15 0.35
40 6 0.14
41 22 0.51
ACGTcount: A:0.11, C:0.29, G:0.30, T:0.30
Consensus pattern (39 bp):
GCTTGTTGCAACGGCTTGAGCGCGAGGCGCTCATCCGTT
Left flanking sequence: Indices 497356 -- 497855
GAGAGGCGCGAAGTCACTCGCCCTATAGAATGAATAAGGTTGGAGAAGAACGCCGGTCCCTCAAT
CCGAATCGGGTAAGGCATCCATCAGAGTGGTTGGGGTGGGGTAGTCTATCATCCCTGCTGAGGCG
GGTGATAGGTCTGAATGAGCAATAGGGGATCGCTCTGAGGAGGAATACTCGCTCGCTCAACCAAC
GGGATCAAGAGCCCCAGCTCGCTAGCGCACGAAGCATGATGAAAAACGTGAGCAGCAAGAAAGCC
GGATGCAACAAGCGAGAAAACGTAAGTGCGCTAACGCGCACTCCGGCTTTCGAGCCTACTTGCTT
GAGCGCTAGCGCGGCGCGGTAGCGCAGCCGCTCGTTAGCGCCGCGCTAGCGCGGCTAGCAGCAAG
ATTCAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCTACCGCGCAACGGCTT
GAGCGCTAGCGCTCAATCCGTTGCTTGTTGCGCTGTAGTTTTCTC
Right flanking sequence: Indices 497943 -- 498442
CGGTTAGGCGTTAGCGCTCAAGCAAGTGGAGGCAGCAAGTGAAGGCGCCCGCTAGGGCGCCTGAA
CTTGCTCCGTAGCTTGCTGCCTCCGTTTGCACCGTTTGCTGGTCTCGCACTCTGCGGCGCCACCT
CTCATCGCTCCCAGACCGCGTCTCATCCAACTCTCCCTTTGGAGACGAACCGCTCTCTCCTCTGA
CTCCTTGAGCCTCTGCTCAAGCTCGCTCTCCCGCCTCCCATGAGGGAGCTGCCCTCAAATCACCC
TCCATGCGTGCATAGGCAGCCCGCATCTCTCCCTCCCGCTGCTCATAAGTAAACTTCGCCTCTCC
AACCGCCGGGTCAGGCTGGCAATCTCCTCTTCTAGCCGCTCTATCTGGCTCGCACTGCCAGCATG
CGCCTCTCTCTGCAAGAAAAGCAAGCTTGGAATTAGCGCATGGTGCATGAAGTCAAAGGCTAAGA
GAAAAGTGAAGTCCAGAAGAGCTAGGGATCATGCCTTAGTCTCCA
Found at i:504804 original size:27 final size:27
Alignment explanation
Indices: 504751--504805 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
504741 TCATCATGCT
**
504751 GTTAGCGCAGCCGTTTTCTTGCGGGGC
1 GTTAGCGCAGCCGTTTTCAAGCGGGGC
* *
504778 GTTAGCGCAGCCGTTTTGAAGCTGGGC
1 GTTAGCGCAGCCGTTTTCAAGCGGGGC
504805 G
1 G
504806 CGCTAGCAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.11, C:0.24, G:0.38, T:0.27
Consensus pattern (27 bp):
GTTAGCGCAGCCGTTTTCAAGCGGGGC
Left flanking sequence: Indices 504251 -- 504750
GATTTGCCACAGTGTGGTTAGATACAATGCGCTGGCAGCCTCAGCTTGGCAGGATGGGAGTGAAG
GTCGAGGGAGCAGGGAAGAAAAGGTTATTCGCTATTGGCTCACCCAGCAAGATACGGCGAAGCCA
ACAAGCGAGAAAACTACAGGGCGCTAGCGCGCCCTTACGTTTTCTCGCTTGTTGGTTAGGGGCTT
GAGAGCAGCCTCCGCTTGCTCTTGAGCGCGCTTCGGCAAAGCATGCTCAGAAAGAAGCAACGGAT
GAGCGCTGACGCGCTCAAGCCGTTGCGCTAACAGCATGATGAAAAACGGATGCGCGCGCTAGCGC
GCAAGCGGCTGCAAAGCCGGCTGCGCGTTAGCGCAACGGCTTGAGCGCTAGCGCGGCTAGCAGCA
AGATGAAAAACGGATGCACGCGCTAGCGCGCTGCCGTTGCGCTGGCTGCGCGTTAGCGCCGCGCT
AGCGCTCAATCCGTTGCTTGTTGCGCTGTAGTTTTTCATCATGCT
Right flanking sequence: Indices 504806 -- 505305
CGCTAGCAGCGCCCTAACCGCGGTTGGGCGCTAACGCGCCCAACCTAGTTTGCAGGCAAAGAGCA
ACCTGACGCGTTGCGGCTTTCCATCTCCTCTCCTTCTTTAGTCATTAGGGCGAGCCGATTTCATC
TCCTCTCCTTCTTAGTCGAGTGGATTGAATCTCCTGAACTTGCTCCTCCGTTTGCTGCTTCCGGT
AGCTTGCTTACTCTCCTAGTTAGAAGAAGGCTCTTTGGCGGATTATTTAGATCTGGATAGAGTCT
CGCTCAGTAAAGAGAGTTGTAGATTCGTAAGATCATGATAGAGTCTCCGCGCGCTAGCGCGCTAC
AACTAGCAGAGCAGCCTGCGGAAAAAGGCTAGCGCGCTACTCTGGCTCGCTTCTGAAAGCGGAGC
TCGCTGCTTTTCGCCGTAGCTTGCTGCTCGCTCGCTGTCTACTAAACGAGCCTTCACTGCCCGCC
CGGCCCCTATCTTTAATCTTAAGTAAAGTGAAGTCAAATCAATGG
Found at i:513899 original size:20 final size:20
Alignment explanation
Indices: 513874--513916 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
513864 TACTCTAATA
513874 TATCTATATCTATATAGTTC
1 TATCTATATCTATATAGTTC
513894 TATCTATATCTATATAGTTC
1 TATCTATATCTATATAGTTC
513914 TAT
1 TAT
513917 ATAGATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (20 bp):
TATCTATATCTATATAGTTC
Left flanking sequence: Indices 513374 -- 513873
GGATGAATCAAATCAATAAGCTTTTTGATTGATTCAGGGCGCAGCGAAGCCAAATTCAATCAAGG
CAAGGGCTTTTCCTGACGCTGAGTCATCCGAATCTTAGAATGTGCTAATGGAACAGGAAGAGTTT
TCAGATGATATGGACCCCCAAGAGATGAGCGAGAACCTCCAATTGCTTAGGGGTCGCACTCTGTC
CCGCTTGGTGGACGAATTCTTCTCTCCTTAAAGAATTCTTTCTCCCACACACCTTTGCCCTCTTT
CACCGAAGAGGAAAGAAGAATCTTCCAAGCGGACAGAGACCTAAATTTCCATTAGATTCATTCCT
AAGCTTGCTTTGTTGCAGCAATATGATCAGTCCGAGAGTGCTTGAGAGAAGAGAAAGCGGTAAAA
ACCTCTCTGATTCGGTCACCGAGCAGTCGGACGACTCTTCAGTAACCCAGGCCTTCGACGCTTCT
TTCGCCCCTCCATCCTTCGGAGGTGGAAGAAAGGGTACTCTAATA
Right flanking sequence: Indices 513917 -- 514416
ATAGATAGAACTATATTACGGGCCCCAGAACGCTAAAAAGGTGGGGGAACAAGAGTTGTCACGAT
AGGAAAGAGAAATGACTATAAGGAACCAACGATTCTCTCTTCTTAAACAACCTATATCCTCCACA
CTTAATCAGCATTTGATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTCC
GTTAGCTGGTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACAC
CTCATGTGGATCTAGCTTTCAACAGCGTAGAACACGTTATGAGAGATGTTGAAGGGGGCTGGTTG
CTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTCACCTTCATATTTTTCG
TGGTCTATATCATGCAAGTTATAGCAGTCCTAGGGAATTTGTTCGGTGTCTCGGAGTTGTAATCT
TCCTATTAATGATTGTGACAGCTTTTACAGGATACGTACCACCTT
Found at i:513915 original size:10 final size:10
Alignment explanation
Indices: 513882--513920 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
513872 TATATCTATA
513882 TCTATATAGT
1 TCTATATAGT
*
513892 TCTATCTA-T
1 TCTATATAGT
513901 ATCTATATAGT
1 -TCTATATAGT
513912 TCTATATAG
1 TCTATATAG
513921 ATAGAACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 1 0.04
10 23 0.92
11 1 0.04
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.49
Consensus pattern (10 bp):
TCTATATAGT
Left flanking sequence: Indices 513382 -- 513881
CAAATCAATAAGCTTTTTGATTGATTCAGGGCGCAGCGAAGCCAAATTCAATCAAGGCAAGGGCT
TTTCCTGACGCTGAGTCATCCGAATCTTAGAATGTGCTAATGGAACAGGAAGAGTTTTCAGATGA
TATGGACCCCCAAGAGATGAGCGAGAACCTCCAATTGCTTAGGGGTCGCACTCTGTCCCGCTTGG
TGGACGAATTCTTCTCTCCTTAAAGAATTCTTTCTCCCACACACCTTTGCCCTCTTTCACCGAAG
AGGAAAGAAGAATCTTCCAAGCGGACAGAGACCTAAATTTCCATTAGATTCATTCCTAAGCTTGC
TTTGTTGCAGCAATATGATCAGTCCGAGAGTGCTTGAGAGAAGAGAAAGCGGTAAAAACCTCTCT
GATTCGGTCACCGAGCAGTCGGACGACTCTTCAGTAACCCAGGCCTTCGACGCTTCTTTCGCCCC
TCCATCCTTCGGAGGTGGAAGAAAGGGTACTCTAATATATCTATA
Right flanking sequence: Indices 513921 -- 514420
ATAGAACTATATTACGGGCCCCAGAACGCTAAAAAGGTGGGGGAACAAGAGTTGTCACGATAGGA
AAGAGAAATGACTATAAGGAACCAACGATTCTCTCTTCTTAAACAACCTATATCCTCCACACTTA
ATCAGCATTTGATAGATTATCCAACTCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTCCGTTA
GCTGGTATTTGTTTAGTCATTCAGATAGTGACTGGCGTTTTTTTAGCTATGCATTACACACCTCA
TGTGGATCTAGCTTTCAACAGCGTAGAACACGTTATGAGAGATGTTGAAGGGGGCTGGTTGCTCC
GTTATATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTCACCTTCATATTTTTCGTGGT
CTATATCATGCAAGTTATAGCAGTCCTAGGGAATTTGTTCGGTGTCTCGGAGTTGTAATCTTCCT
ATTAATGATTGTGACAGCTTTTACAGGATACGTACCACCTTGGGG
Done.