Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029641
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 271618
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:45350 original size:18 final size:19
Alignment explanation
Indices: 45327--45362 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45317 AAGAAACAAC
45327 CACCTGC-GTTTGGTGCAG
1 CACCTGCAGTTTGGTGCAG
*
45345 CACCTGCATTTTGGTGCA
1 CACCTGCAGTTTGGTGCA
45363 TTCTTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.14, C:0.28, G:0.28, T:0.31
Consensus pattern (19 bp):
CACCTGCAGTTTGGTGCAG
Left flanking sequence: Indices 44827 -- 45326
GAGGACTACCCTAAGCCTACTTGTAGGCAGGACTTTCAGTTACAATGTCTAGGTTGGGCAAGCTT
GGATGCCCCTACTCCCAACAAGTTGCTGGTCGGGATCGTGAAACTATCGCTGTTTGGTCATAAGG
ATAATAGTTCTTATCTTATTAGGTCAGGGGCGGCCGGCCCGGGGGTTACCCGCGATTGGTAATGG
CATAACCAGAAGAGGAGTAGGGGAGACAAGGTTACGCGCTGGGTAGCGCAGCGCATCTGTTTCGG
GTACAGGGGCGACGAGGGGTGCTAACCCGGCCACCCAACCCAGCAGGTCAGGGGCGGGCCGGCCA
TAGGTTCGAATCCTGCCACCTTTCTTGTGGATCATCCTGTGGTTACCGGATGATGGGAATAACAA
AGCAGAAATTGAACAATGAGCAGAGCACGAAATGTACATAATATATGAATTCTTTCATTTATCGT
TATTTCCGGGTCTTTTCGTTGCATTCACTTACAACAAGAAACAAC
Right flanking sequence: Indices 45363 -- 45862
TTCTTCTTTCTTTCCTCGGTCTTTCGTTCCGTCATATTCCTAATAACTTATCCAATTACAACGTA
TTAACCGCTAATGCACCTTTCTTTTATCAAATCTCAGGGACATGGTCTAATCATGAGGGTAGTAT
TTTATCATGGTGTCGGATCCCACGTTTTTATGGATTCCTTCTTTGTTACCGGGGTCGACCCCAAA
GCCATAATGTCTCAAAACGAGGAGGCCATAGAGAAGTTTTGTATGACTTTGTCTCGAACTTCGTG
AAGAACTCCATTCTATCTCTCCCTCGTTACGAACAAAAAAGTGGGGCTGCGCCCCAGTTGTACAC
TCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCGCGAAGGAACCGGACGTTTGACG
GGCCAGCCCTTTTTTATGCGCCGCTTTACCCTGAAAGGATAATTAGCTTTGCTCCTCTGGGTGCT
AGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGAAGGACTCATCCT
Found at i:96205 original size:12 final size:12
Alignment explanation
Indices: 96190--96280 Score: 128
Period size: 12 Copynumber: 7.6 Consensus size: 12
96180 ACCATCTTTA
*
96190 TCATCAACCCTC
1 TCATCATCCCTC
* *
96202 TCATCAACCCTA
1 TCATCATCCCTC
*
96214 TCTTCATCCCTC
1 TCATCATCCCTC
96226 TCATCATCCCTC
1 TCATCATCCCTC
96238 TCATCATCCCTC
1 TCATCATCCCTC
96250 TCATCATCCCTC
1 TCATCATCCCTC
*
96262 TCTTCATCCCTC
1 TCATCATCCCTC
*
96274 TCTTCAT
1 TCATCAT
96281 AACTCTTTTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 73 1.00
ACGTcount: A:0.18, C:0.47, G:0.00, T:0.35
Consensus pattern (12 bp):
TCATCATCCCTC
Left flanking sequence: Indices 95690 -- 96189
AGAATTTACGTATTACACCAAGAATTCATTGACAAGCGGCTCACAAAGCCCCCCAAAGCTCCCGC
TTATATGGAGAAGGAAACTCTTATTAAATACCAAAAAGAACGTAGACTCAGTAGATATACCAATA
ATAAAGCTAAACTAGTAAGAAGTAACAAACATAAAGCAAAAGAATTCCTGAACAAATTCAGTAAA
ATTAAAGTTAACATAGAGTTCATAATATCAGTAGTTATATTCTATATATCGGAAAAACAATAGAC
ATGGATCTGCCCTATCGGGATGAAGCGCTTCTCGTTACCTGCAATCTTCAGAGCATGAGCCTGAC
GAGTTAACCAACTACTCTATCCCCGCTTGCTACCAACTATTCTCATCTGACAGAGATTACAAGTT
AACCTGGCTTATCCTTCACTTTCTTAGAATTATAACTAGGTGGTTTCAGATCATCGTTAGCAGCA
CTCAGTGAGGACTTCGGCTTATCCCCATCTTTCTCACCATCTTTA
Right flanking sequence: Indices 96281 -- 96780
AACTCTTTTCTACTTCAGAGACCTTTTCTAGTTGTGAACGCAAACTTGCTATCTCATCATCTTTT
CTCTTCATCTCATATTCTAGTATAGTACTCTCATAACCTGCAAAGTCAATAACTTCGATAGGTTT
TGTGTCAACCAAGGTCTCATTAGAATCATAAATAGCTACCCTCTTGATATTTAGTCTAATTCCGG
GGTTAACCAATATATTGGTTTTTGTTATATTAAGTTTAAGGATCAAGCAAGATCGGTAGAAAGAT
CAAGATCGGGAAGAGCTTCTCTTCGAAGGTGCCGCTGAGGAGCTCTGTTCGGGTACCCCCCCTCC
GGCTCGTAGTTGAGAAGAGCTTTAGTTTAGGAAAGGGCTAAAGGGGTGCGATCCCTCTCGTTGAG
AGTCAAGGGTCTCCAGGAGTAGAAGGCACATCCTGGATCTATTAAGCCGGCAAGGGTTCAGCATT
GGCTTTCACGACCGCAAAGGGGCCATCTCTCAGTCGGAGTAGATA
Found at i:100063 original size:10 final size:10
Alignment explanation
Indices: 100033--100070 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
100023 AGTATTTATT
*
100033 ATAATAAGTCA
1 ATAATAA-TAA
100044 ATAA-AATAA
1 ATAATAATAA
100053 ATAATAATAA
1 ATAATAATAA
100063 ATAATAAT
1 ATAATAAT
100071 CGAACTGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 6 0.24
10 15 0.60
11 4 0.16
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
ATAATAATAA
Left flanking sequence: Indices 99533 -- 100032
TATATTATTCATTTTTTATATTGATAGGGATCCCCAGATTCCCGTCACTACGGATTGATTGTCTC
TACCTAACTACATGGTAGTGGTATAGGGAGCGCAATTGCTAGAGCACGGGAGAATGAAGAGTAAT
GATTTCAGCAAGAGCAGCCGGACGGACTACTATAGTGAGTCCTGTGACTACTAAAGTAGAGTTGA
GTCAAAAGGTATGGTATAGCAGCCTTTCCGAGCGAGCCTCTGGGATCTCCTGTAAACCCCCATGA
TGTGGTAAAGGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAG
GGGAGACCTTCACGTCCGGTTCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGC
AATGTTACTTGGTTCAACTCTATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGG
TAGATAATCGATCGTCTTTCATTTTGATAGTTAGTAGTATTTATT
Right flanking sequence: Indices 100071 -- 100570
CGAACTGGAGGAGCTAAAAGCCGGGATGGCTTGGTAAGCAAGCAATCTGTTATGTAGGCGCCAAC
TCCCATTTCTTTCTCTTCTTTCTTTTTGAAAGTCACGATCAGAATGAAAGGTAGTTCGCTGGGCC
TGTATTTTGATCCCAGAGGTGCTGGTTCGACTCCAGCTCGTGAGAAGGCTTTTTTTTGTCATATC
CCTTTGTCTCGCTTGTTCTTATTAAGTTCCTTTGTCCTTCCATCGCTCAACTATTTGTTGAACAT
AGAATTCGCCCGATATAAGATTAGTACCAACTGGGATCATAAAGCAGATTGGGCTAACGGAAAGG
GAGGAGTCAGTCGTTCTGCCATCGATTACAGGCAAACCTTCCCCGAGCTACAGCCCTCACTGTCG
ATTCAAGACACAAACAACTACCTGTACCACAACCACTGGCATATGCGGTTAGCGGGTGTCAGGTC
TAGGTCTAGATGGAGGTTCTCGTTCCAGTTCTATTTCTAGTTGAA
Found at i:106614 original size:19 final size:19
Alignment explanation
Indices: 106590--106629 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
106580 GGTATGCCCT
106590 TTCCAGTTCTGTTATAATA
1 TTCCAGTTCTGTTATAATA
106609 TTCCAGTTCTGTTATAATA
1 TTCCAGTTCTGTTATAATA
106628 TT
1 TT
106630 TACTTCGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (19 bp):
TTCCAGTTCTGTTATAATA
Left flanking sequence: Indices 106090 -- 106589
TATCATCCAGTTGTGGCTTTTTCCCCCCTTCATTCTCAAGTGCTATAGCTTGTTCGCTTGAATAC
ATTAGGTAGGGAAGGACAGGATATTACTCGTCGGTTCTATTCGGCGGTGGTGGCTTTGCTTTGAA
TTTCTTTCCACTCATTTTGGCTTTTTCCTTTTATTATTCATGCTTGCTCCACTAGCCTCAAACTC
CATTCCCATTTCGAATCGACCTGTTAGATTAGAGAAGGCTTTTCTGCTTAGCAGAACCCGATTCT
CCGCTCAAAACATCTGATCTTCCGACTTAAACAACCGATTCCATTTCTATCCTTTTTTTCTATGA
TCAATTCAATAAAGACTTCCTTCTCAACTGACAACCCCTGGGCCTGTTCATAAGCGATCTTCTTT
GTAGGGCTTTCGGCTCGGCTGCCTTCCTTTATTTTTGGGCTAAGGCTAGCTTTCCTAAGTCAGTT
CCAGAGTGCATGAGTGAATCTTGATCTGTATTCAAGGTATGCCCT
Right flanking sequence: Indices 106630 -- 107129
TACTTCGGTTAAGCTGAGGTTAGCGAAGTAAATCCTTTGCTTGGGGCCTTGGAGGTCGGAGATCA
GAGCGCTGTGTTTAAGTCGTCTGGCCGTAAGAAAGACTTTATCTGCGCCAGTAAGAGTAAGAGCT
TGAGAAGAAGGGAAAGAGGAAGAAGTATTCAAATAATTCACTCCTTTCCCTTTAGGAAAGCTTTA
CTTTATTCTTTCTTTATATACTTACCTTACTAAATAAGACAATACTATAAAAGACTTGGACGAGA
AAAGTCAGATTGATAACTATGAATAGTAGGAATAGTCTAAAGCAGTGGTTAACTAGAAGAAGAGT
CAAAGACTTTTTCCTAGCCGCTGATGGAGACAATGTGGGACCTCGTGCTCAGCCGGTTGCTCTTT
TAGATAAACAAAATTTCCGGAACATTGCCTCGGTAGAAGCAAACCCAACTAATACGCAAGCCCAT
CTCCCGAGACAATCAAATCAAAGCAAAAGTGCCTTGCGGCTGTCG
Found at i:121100 original size:33 final size:33
Alignment explanation
Indices: 121058--121199 Score: 275
Period size: 33 Copynumber: 4.3 Consensus size: 33
121048 CTGGGCTTTT
121058 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
1 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
121091 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
1 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
121124 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
1 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
121157 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
1 TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
*
121190 TCCGCTCCTC
1 TTCGCTCCTC
121200 CGCATCCCAA
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 108 1.00
ACGTcount: A:0.14, C:0.38, G:0.15, T:0.33
Consensus pattern (33 bp):
TTCGCTCCTCTCACATTCATTCGTTCGAGCAGC
Left flanking sequence: Indices 120558 -- 121057
CCAGACGCGGCGCCCTTTTTAATTATCATCTACCGCCCTTTCTTTCCTCCCGGCTATTCACGCAT
GAAGATCGTCGTATGTATGCTCGACTTCGGTTGCCGGTGCGTGTAGGTAGGAGTACATTATGGCA
GGATCAGTCACCCGGGCAAACCAACCCTCCTCCAAGAAGAATTGTGCTATGCCCTCCCGATCCCT
ATAGAGCGAAAGAGCTGCCTGGTGATCCCTAGGTTGCAGCACGTCCGGTCGTTAACTCCTCGCGC
CGCTGCCGCCGTTTATAGGACCGACCGACGCCTCACCTGCACTGGTACCTACGTAGTGTAGTGTC
GGTCGCACATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGAACCAGGGGTATTCGAGCCAGC
TGCGTACGATTAGCCAGCCTTGCGGCTGCAAAAGGATTAGACATCCTCCCATGCTACGGTTCCCT
GCGGTCCGAACCCGGTGCCGCATTAGGTTAGGGAGCTGGGCTTTT
Right flanking sequence: Indices 121200 -- 121699
CGCATCCCAAAGCGCGCTGCCCTCCTAGGCGCGAAACACTAAGTAATCCAAGCCAACCCACATTA
CTGACTAACGGTGGATAATCATATTTCTTAGAGGTACTAAATACAACTCCATGAATGAGCAAAAT
GAAGGTTGCATTAATGATAAAGATCTCTGGGGAAACCGCTAAAAAAAGATTGAACATGTGGGAGG
ATCCGAACGAATTAAGTTTTCATTTTCCCCGCATGGAGCACTGAGTCAAAAACTTCACTTAAATG
AAAAAGGCAGGTTGCCCCCCGTCCTTTCTTGCTCTCGGTCCCACCCAGTGCCGCTACCCACCTCT
ACTCTGATCTATTCCTATAGCCATAGATCATAGTTTCTAACCGCCGTCATAAGACGTTGGAAGGC
CCGTGTGTCTCGGGTACCCAACCGGTAGATACTGCGTAGATGGTAGCGGTACTGCCGCAAGGAGA
GTGCCCTACCTCTCGGATAAAAAACTATACCTCTTATCCGATGGC
Found at i:121933 original size:30 final size:30
Alignment explanation
Indices: 121899--121970 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
121889 ATAATACCGG
*
121899 AACCTCCGGGGCAGCGGGGGGCACCTCCAA
1 AACCTCCGGGGCAGCGGGGGGCACCCCCAA
121929 AACCTCCGGGGCAGCGGGGGGCACCCCCAA
1 AACCTCCGGGGCAGCGGGGGGCACCCCCAA
121959 AACCTCCGGGGC
1 AACCTCCGGGGC
121971 TACCCGAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.19, C:0.39, G:0.36, T:0.06
Consensus pattern (30 bp):
AACCTCCGGGGCAGCGGGGGGCACCCCCAA
Left flanking sequence: Indices 121399 -- 121898
GAACGAATTAAGTTTTCATTTTCCCCGCATGGAGCACTGAGTCAAAAACTTCACTTAAATGAAAA
AGGCAGGTTGCCCCCCGTCCTTTCTTGCTCTCGGTCCCACCCAGTGCCGCTACCCACCTCTACTC
TGATCTATTCCTATAGCCATAGATCATAGTTTCTAACCGCCGTCATAAGACGTTGGAAGGCCCGT
GTGTCTCGGGTACCCAACCGGTAGATACTGCGTAGATGGTAGCGGTACTGCCGCAAGGAGAGTGC
CCTACCTCTCGGATAAAAAACTATACCTCTTATCCGATGGCGGTTACGCAATACCCGAGTCGGAT
TGAAGCCGCTATGAATCAAAGCGGCTTCAATTAGCCTATCTATCTCGCTTTGAACCGAGATAGTA
TCGCTAATTCTACGTAGGGTTGGATTTTCCCCTAACGTATTGATCCAGAAACGCGAGTAAAGCTC
GGCCTCTCTTTGGGGGTCCGGTATTAATGCATCCAATAATACCGG
Right flanking sequence: Indices 121971 -- 122470
TACCCGAATGCCCACAACAGGCGGTGAAGGAGGTCCCTCCACACCTCCCACCCCATCGCATGTTG
CGATGTCCCCGGAATATAAACACAAAAAAAGGTGAACAGATAGAATCACGAACGTAAGAGACTGG
GATTCCAAACCAATCCAACAAAGGGCTATTCTAGCCCTGTGGAAAGCTAGGAAAAACAGCCGGAG
CATTTCCTGTATTTTATGCCATAGATTCATTCTTTTGGTTACTTCGTCGCTCTGCTCCCCCCAAC
AAGAGGAAAGACTTTTGTCCACATATGTGGTTGATATGTGGTTGGTTGGTTGTTTACCAGTAAAG
GCATGGGGCTCTTGGGAACTCAGGGATTGAGCTGCGCGAAACTTTATTTACTCGCTTGCCTTGAT
ATTGAGACAATCTTTCTTTCTATACGTAATTTCCTCGTCACGACAATGAAACATGCCAGCCCTAA
AATCCGGAAAAGCTTAGGGAGGGCCGCTCCCACGTCTGAGTGACC
Found at i:195944 original size:12 final size:12
Alignment explanation
Indices: 195927--195953 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
195917 ATCTTCTCTT
195927 CCTCTATCTACC
1 CCTCTATCTACC
195939 CCTCTATCTACC
1 CCTCTATCTACC
195951 CCT
1 CCT
195954 GCCTCGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (12 bp):
CCTCTATCTACC
Left flanking sequence: Indices 195427 -- 195926
GAGGTACTTTACTAGCTTGGCCAAAGGGGAAAGGACTATTCAAGCATTCATTCCAATAGGGATGG
GGAAGATCTTCTAATGCTTCTAACCCACCCAAGAATGGGGAAAGGAACTTAGTCCGATCTTCTTC
CGCCTACGCTACGTCAACTGGACTTTTGTCACTATAGTAGCGAGTAGCTCGAAAGCCGCAATAGA
AAGGATTTAGGGGGAAGAGCTCAGGTCCGGCGATGACTACAAGAAAGAAATCGAGCGGGGATAAA
TCCAATTTCATTGCCAGAAGGTATGGTTGTGCCTGAAGAAGGGCAGTCAGAAGAGGAGAAATCAG
CCTGAGTTCAATTAGTCCCAGCGTTATCAGTACAAGTAGCCAGGGGAGTGTACCAAACAGTTGAG
GAAGGAGAGGTTGTTAAGGAGGCAGCACGACACAATAAAGAAGATCCGAGTGAAGCATAATTTTT
GACTACCTCAATCAATGCCCGAGAGCATTCAATAAATCTTCTCTT
Right flanking sequence: Indices 195954 -- 196453
GCCTCGGTTGGTCGGTCATGGGGCTTCCCTCTGCCAAGAATTGAGAGAGGATATTCCGCTTTTAC
TCAGTACACAGATTCGGATTAGTCAAAATAGAACTAGACAGATTCACTCCCGGATTGGAAGGAGG
AAAGCAGGTCTTTTAGGCCTACCTCACATTTGTCTTCTACGAGGGACGAGGGAAAGGCGGATTAG
GATGAAAGGATTTTTTAGTTCATACCAGGCACAAAGGCCTAATCAAACCAGCAGGCGATAAATTC
CCGATTAAAGTCTTGGAGGAAGGGTGGCTACTCTCTCTTTTGAGATTTTCAGAGCCAGGAGTTTA
AGAGCGGCAGTCCTTATGCCGACAAGAAAGGGGAAGACTTGAATAGCAGACAAAGTGGAATATGA
CTCACTAGGAAAGAAGAGATCAGCGCTTTGGTTAACAGTTGGAATTCTCCCTCGTAAGGCAGGCT
CTAGTTCGACTAGCTTTTAGCTGGAACGTGGTTAACCGGAGATCG
Found at i:248479 original size:12 final size:12
Alignment explanation
Indices: 248462--248487 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
248452 TGTGAGGGCT
248462 TACGTATATAAA
1 TACGTATATAAA
248474 TACGTATATAAA
1 TACGTATATAAA
248486 TA
1 TA
248488 TCTTCCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.35
Consensus pattern (12 bp):
TACGTATATAAA
Left flanking sequence: Indices 247962 -- 248461
TCCATGTGGTAGTTTTATTCCATCGCATTCTAGTGATCCAGTTTCTGCCTTTCCTGAGGCAGCTG
TTGAAAAGGTTTTAGTTTTGCTTTGATCATGCTTGGCCGACCTCTACTGATGTATCTGTCATTAA
TGGAAGCACGAGGGAACGGGGTTCATCGGCTTAAGCCAGTCAATCTATCCAAAGAGCCTACCCTA
CGCCTCCTATAATAGATGAAGCTCCAGCTGCGCATTGCTGATTTCTTTCTCAATCCTGAATCCCT
ACTTTCATCACGAAAGACGCTTTCTCAGTATCTATTAAATTCGGACTTCATGCTCACTTCTGAAA
TGAAGCGGCCTAAAGCTGAGCGACGAGGTCCACTGGCATGAGAATAAAGCGAAGTAGAGCGATAA
GCACACTATCGATTGATCCAAAGAAGCTTAACTCATAAGAACCTCCCGCTATACTCTTTTCTTGG
CACTTGAAGCAGGAGTCTTTCCTTCAGTCTTATAATGTGAGGGCT
Right flanking sequence: Indices 248488 -- 248987
TCTTCCTTTTTTCCTTTCTAATCATTCTTGCTGGGAAAGCGTCCTCCAGCCTTCTTCATCTTCAT
TGCAAAAGAGCGCATGATAAAATAGAAAGGATTCAATCCAGCCCCAAGCCGGGGCTACCCTGTTT
ACCGGATCCAACGATTAGAGGTCTGCCCGTCCGGCGTCTGTACCTCACATTGTTTAGTTTAATAA
GGGCGGCGCCCTTGCTCCCTCTCCCAATCGTTGACCTTGACAGTGAACTCGTGGACGAGGCTTTG
ACCTGAATTTAAAAGGGAATCCCGGTTGTTCTCAACGTAATTGAGAACCTCATTAATTTTCTTCA
GTTTCAGAGGGGAAGCTGTTCTTGTTTCATAAGCAAATGTGGCAACTGGTGGTAACGTATAAAAG
TACCCTATGTGTGAGCCGTTAGAGTATAATCAAGTCCATGTCTTCTTAGTCAGTGTCTCAGTCAC
GGAAATTAAAAGTAAAATGTCCCTGGTATACTACTAAAGCTCTAA
Found at i:258783 original size:13 final size:13
Alignment explanation
Indices: 258765--258789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
258755 ATTGCTTGAG
258765 GAAAAAAATTACT
1 GAAAAAAATTACT
258778 GAAAAAAATTAC
1 GAAAAAAATTAC
258790 CAATATGTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (13 bp):
GAAAAAAATTACT
Left flanking sequence: Indices 258265 -- 258764
ACTCCTCTTTCACTGGCTTCTACTTGTCTTTTACTGGCTTATTTGTACCCAGCTTCATGATTGAA
CTCCCCTCGGCCAATCGTCACTCGACAGCAGCTCCGTCCTAGCGTAGGCTAAAGAAGTAAAGCCT
CTGCCTCTATCGCTTGATTGAAAGGATCAGACACTTTCCCCTACTTTTGACAGCAGAACGAATTA
TATTATTAATATAAGTAAGGTAAACTTGCTTTTGCCGATTGCACTCGGATAGCGGCCTGGGCCGT
CCTGGAATGGGATAAAAATAAATTAGATGGACTGGACTTCGATGGGCTTTGTTTGGAAAGCCAGG
AAAAGGTGGCATTTCCGGGCCAGGGCTGAAAATGGATCTGAATGCTAACATTGGGCTAACCTTCA
CTCCAATAGAATGGGGAAACGAGCAGAAGCATATTTTGTCTGCCATCCCTCAGGGCAAATCCGTG
TTCATCACAGGCTCTGCTGGGACTGGTAAAACCCTATTGCTTGAG
Right flanking sequence: Indices 258790 -- 259289
CAATATGTGGTTTTGTCATACAAAAAGATCCAATTTGTTTGGACTCGTTAGGTTTGGCCCATTAC
CTTGAGTGAGGCCGAACGTGTACACCTTTTGTTATGAAGATGTGATCTTATCCACCGATGGGTCT
TGTTCTAAGCCCAACCCTCTCGTCTTAGGGTAGGATATCCAGAAACCTTAAATCACGGGAACTTC
CCCTTTTTGGTAGACAGCCTATGTTGGGCTGACTAAGCCCACTATCCTACCTAATAGGGTCCCAT
CTTGTGTCGGGTTAAGGGCGCTTAGTGGAACCCAATTTCTTCACTTGTAGTCTAGGGCTTTGCTT
GGCATTGGGCTTCGATATAGCTTGCTTTCCAGGTTTTGGATTAAACCTCTGCTCTCCTAATTCAG
TCTATAGGCTTAGAATTTAGCCCAGAAAGAAACCTTTCTTAGCATCCAATTGCTCGACTCGATGG
GTACTTCTAGTGGTTTGCCGGAGAAGCTCTTGTATTTCTTTAAGG
Done.