Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029130
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 978846
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
File 5 of 5
Found at i:924359 original size:16 final size:16
Alignment explanation
Indices: 924338--924369 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
924328 CGGAAGGCTC
924338 CGTAGTCAGGGAATGG
1 CGTAGTCAGGGAATGG
924354 CGTAGTCAGGGAATGG
1 CGTAGTCAGGGAATGG
924370 GTTTGTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.44, T:0.19
Consensus pattern (16 bp):
CGTAGTCAGGGAATGG
Left flanking sequence: Indices 923838 -- 924337
TTTGTAAGTCTACGGCCACATGAGCTCGGGATATATGTGGGCCACTCTACACAGTCGGAGCTCAC
TCGTAGCAGTCGGGGTAAATCGTTCCCACCCCATCTATCTATAACGCAGTGTAAAGTAAGGTTGC
TGTCCAGTTGCTTGCTTGCGTGTATCGTGTGGGGGCACCACTATATACGACGCTCTTCTGCCTGG
CCTGGCGTCCACTATGCGTACGTCAGACCTATACCGTATACGTATACACCTCTGGGGTCTATGGA
GTGTGATTAACCAGGGAAACCCATTCCACTTGGCTACTGGGTGGGTTACACTCTCTATATACGCT
GTCAGGGTTAGTCGATAACTGTGCCGATCAGGGTAACCAACTACAAACGGCTACAGGTGAATGTA
CCACCATGGTTAACTACGATATAGCGGTTGACAGAGGGGTGTAGCGAGTCCCATGGCCCGAACCT
GCCTGTATACTTGTTTCTGTATTCGAACAATGGTGCGGAAGGCTC
Right flanking sequence: Indices 924370 -- 924869
GTTTGTTCTCCGACCGTAACTGAGCTTGCACGGGGGTAAGGCGCCGGCTGGAACTTCACTGTTAC
CACAAACCCCAACCTCGCCACTACACGTAACGGCAGGGCTCACTCGACTTATTGCTTGATAGTTG
GGTTTGTAGTGATACTACTGGTTGAAACCACTCTATGTAACTGACAGCAACCTTATAAATAACTG
TTATCAGCTACGGAATCCGAATCGGAACTGCTGAGTTATTGAGGTGGGGTACGCACGGAACTCAC
ACGCACGGAGCCCACCCCACCCCCACCCCGCACATATATAGTTGTTGCCAACCCAACCTGCGCCA
AGTATGATTTATTTGTATTGTCGCCAGTGTAGACCCCTTCCCGGTACTGTTCTAATGCTTCCCCC
GTGACTGGGTGGTCCATGGAACGTCACGCTGTTCAACGAGCCCGGTACCTGGGTTATATAGAGAG
GTTCGCGAACCGCATCCCGCTACATAGTGGCCGGGGTAAGGGCAG
Found at i:927796 original size:13 final size:13
Alignment explanation
Indices: 927778--927802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
927768 CGCGCGCTGC
927778 TTGTAGCGGGGTA
1 TTGTAGCGGGGTA
927791 TTGTAGCGGGGT
1 TTGTAGCGGGGT
927803 GAGCGTGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.08, G:0.48, T:0.32
Consensus pattern (13 bp):
TTGTAGCGGGGTA
Left flanking sequence: Indices 927278 -- 927777
GAGTAATATCAATAAGTTGTAGTGGCCCCGTGTATTACACCAGTTCGAGCCCGCGAACTAGTTGG
GAGTCGGTTCACAAAGCTCACGTAAGGCTGGGGTGTAGTGGGGCAGGCGGTTATCGTCGTAGGGT
AGGCAGTTCGCTGCGCGAACACAAACAGAGGAAGGCAGCTCATACAGAGGACACTGCTCCATAAA
CACCCCTCTCCGTTCACCGATACGCATACCAACATCGGGCAGTCCTTTTATTACACCTCCATCAG
TCAAGCCACCGTCACACACCCACACCTTCCATGTAATCGTACTATATGAACAAAAATCCTCCGTG
CCTGCACTAGTTCCGGCTGGAGCGGCCCCACATTGACGTTCTGTTACGATCCCTTACCCTGCTGG
AAACGAGACCGAACCAACAACACCATCTACAGTGCACCGACCCATCGACCACATAGTCTCCGAAG
TACTTAGCCAAGTTTCCCCCTTAGTGGCGGAGCCCCGCGCGCTGC
Right flanking sequence: Indices 927803 -- 928302
GAGCGTGCACGGGATGCGGGTCAAGTAGCCCAAGTGTATTCATCCACCGTCACGGGAAAGGCAGG
TGCCGGGGACACTCACTATATACCAGGAGTGGTCGGGAAGGGTAACTAGTTGCTTGTTGTATCGG
GGTTCGAGCCCAAGGTAAAGTGGTACGTTCAGTAGCCGGGTAGCGGGCAGCCACTGTTATTACAT
CGATTAATTGTGAGGTCTACCCCCAGCGTTATATGGACTGCTAGTACTAATTCCCCAAACCGCAT
ACGGCACATATAGGCCCCTGTCCGCGGAGCGAACCGACTCCCTTCAGTACCCCACCGGATTCGTA
AACCCCGCACACCGACCAGCGTTATGATTATCATGAAGTATCGGTGCGCTGATCCTTTCCCCTCC
TGCCTGGAAGGGGGAGTCTATGGGTATATAAACCCCTGACGGTCGTACGTGACTACTAGAGCAGA
CTAGACTGACCGCGTTACATGCGTATCCGTATCATGAGCGTCACG
Found at i:928905 original size:22 final size:22
Alignment explanation
Indices: 928877--928918 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
928867 TGTGGGGGCC
928877 ATACCTGCTCGACACAGCTAGA
1 ATACCTGCTCGACACAGCTAGA
928899 ATACCTGCTCGACACAGCTA
1 ATACCTGCTCGACACAGCTA
928919 CAAAAGCGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (22 bp):
ATACCTGCTCGACACAGCTAGA
Left flanking sequence: Indices 928377 -- 928876
GGCTTGTGACGGAAGGGGCGGGCAGCCTATAAGCTTCTACGTATTCATACCCACACCCGGTGCTA
CGTATTCATACCCACAGGCAACATATGGCTACTCGCTCTCGCCCACCACAAACTCTTTCGTAGCT
GTGATTCGTGGGGTTGGGGCAGGGCTTAGTAGACGGGTTCGTATGCAGGCTGGCCGGCTACTGGA
AGCTCACTCGCACCGCATGTTACGGGGGTGATGAGTACCCCACCGTACGTCAATAACGTTGGCTG
TAGTACTGGGTTAGAGGACTGCCCTTACCCTATACGATCTAGAACGAGGAAGCCCTTACCCGGCA
ACTTCACTACCCCATATAGGACCGGAGCAACAAACAACCCAAGCCCTGAGGGAGGCGGGTCGCTC
ACACCCTACATCAGGCTGGCCGGGTCCTGTGCATCGAATGACCAGCGTCACGTAATTGCAAGTGA
TCAAACGCATGTACCCTTTCCCCACGTTGGTTATATGTGGGGGCC
Right flanking sequence: Indices 928919 -- 929418
CAAAAGCGATACCGTACTCCTGGAACACCCCTAACGCCAGCCACCGTACACGGAAGCAGAGGGCT
CACAGCTACACCCCGGCAGCACTATAGCAGCCCGCACCAGCACCTCCCGTTGTTCCAGTACTAGT
GGGCGAGCGTAGGTAGGGCAGGCAGGAGGTTGTCGTTGTGACGGTGTTCCGCCAACACGGCTAAC
TAGGCTATGTGACGCTGGCAGGGGACCGATACGTTCTTATAACGGCCGCGTGAGCAACTAGTTCC
GAAAGTGATGTCTAGTCTGCTCGTGCTTGTTTCCTCGCCAACAAACGGATTCTACACTACCTCAC
ACCCCCCGTGGGCTCGCAACCGTAAGCCAGGGTCTACTAGTTCTCACCGCTAGGCAAGCGGCTAG
TTTGTAACTGCGAACTACTAGTTCATCAAGCGGTGGGGTGGGGAAGTCACCAGCCGTGCAACTAG
TCCTGGTCTGCGTATATGGTTATGGTCCTCAGCTACGACGTTTAC
Found at i:929625 original size:22 final size:22
Alignment explanation
Indices: 929597--929640 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
929587 TTAAGAGCCA
929597 TTCCCCGTCTTGCATACGCAGG
1 TTCCCCGTCTTGCATACGCAGG
929619 TTCCCCGTCTTGCATACGCAGG
1 TTCCCCGTCTTGCATACGCAGG
929641 GTATGGTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.36, G:0.23, T:0.27
Consensus pattern (22 bp):
TTCCCCGTCTTGCATACGCAGG
Left flanking sequence: Indices 929097 -- 929596
CCGCCAACACGGCTAACTAGGCTATGTGACGCTGGCAGGGGACCGATACGTTCTTATAACGGCCG
CGTGAGCAACTAGTTCCGAAAGTGATGTCTAGTCTGCTCGTGCTTGTTTCCTCGCCAACAAACGG
ATTCTACACTACCTCACACCCCCCGTGGGCTCGCAACCGTAAGCCAGGGTCTACTAGTTCTCACC
GCTAGGCAAGCGGCTAGTTTGTAACTGCGAACTACTAGTTCATCAAGCGGTGGGGTGGGGAAGTC
ACCAGCCGTGCAACTAGTCCTGGTCTGCGTATATGGTTATGGTCCTCAGCTACGACGTTTACGTC
GCCCTGGCCTGTGGAGCCCAACCTCACGCGTGCCTCAAGTAGTTCAACGGAGTCCAACCTATCTG
GTCTCTCAATACATTCCTGTGGAGCATATAGGACTCATGAAGGGAATGGTGACTTGGTGGTCTAG
TTACGAGTTTGGAACAGCTCTCTAAGTAACACTCCTTAAGAGCCA
Right flanking sequence: Indices 929641 -- 930140
GTATGGTATGGTATGGTATGGAAGAACCTCCTGGCGCCTACCCTTTGTGAGTTGCGGTACCTTAC
GTGGTTGGTTGACTCTGGCCCAGTTCCGTCTGCATGTTGGAGGAACCGGAAGACCCCGCTGCGCT
GTCGGGTTGGTGGAACATATATCGTAACGACAGAGCGCCTAACCGCAACATGCTGAGTACGACGG
TCTCTAACGGCAGGTATCTGGAAGCCTTCTATCCGGCGAGGTGCCGGGGTGGGTTAGTGGGAGAG
TAGGGAAGCACGAACTTACTGTTTCACCTCCTTCCTATCCGGCGGGCGGCGGCTCACCGTACGTC
AATATGCCGGGTCTGTCGCGGATTTGTTACAAACAAAGAGAACTGGTCGGTGCCCGGGTAAACAA
GGAGGAAACAACTATGGCAGCCGTTTACCTTCCAAGTACGCGGTGAACGGGTTGTTCCGGACCCC
TCCACTTCTGCCAGGTCGCGTCCGGCAAGGCGGGCACTGCTCCCT
Found at i:932800 original size:13 final size:13
Alignment explanation
Indices: 932782--932806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
932772 TCACTATATA
932782 GATATATAGTACT
1 GATATATAGTACT
932795 GATATATAGTAC
1 GATATATAGTAC
932807 GTACTTAGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
GATATATAGTACT
Left flanking sequence: Indices 932282 -- 932781
GCACAAACCATAGCGCCAGCCGGGCCGGGTTCAGCTCTATATATGAATGAGGACACACACACTGC
TCTTGGTAATTGCTTGAGTTCGTCATTCAGCATTATGAAGGGTGGTATGAGTAAGGCCATTGAGC
GTCACAATGAGCTGGCTGATTCCTGCCTGCTTCGACACTGCGGGAGGGAACAGACCCTGCCCACG
TGTAACCTCATTAGCACACCTCAAACGCAATAGTTGCTATCGGCGGAACTACCGATACCGTAAGA
TGATAGAACCAACCCTTGCGTATATGAATTGATTGCCTGCTGGTATATAGATATATCACTAACTC
ACTGCGGTAGCTTGACTTTCTAACAGGTGAGAACCGGCGCGGCGAGCTTGGGAGAGGCAGGATTC
GAACCTACGTAGAAAACCTCCAACAGATTTACAGTCTGCCGCTTTAAACCACTCGGCCACTCTCC
CCGGCAAACCCAATCACTCCTATACCCCCACCCACTCACTATATA
Right flanking sequence: Indices 932807 -- 933306
GTACTTAGGCAGGCGCAGCACGCCCCCTCTCCCGCTTCAGGTGGTAAGCTACAGAATAGGGATTC
CACAAGGATCACCGATATCACCGCAAGTGCACCGCATATCGCAGCACGTAGGGGTGGACCGTAGC
ACGTGGGGGTGGACCGTATCTCTCTCTCCTCGCCTGACTGAGCCGTCCGTCCCCTAGTACAATGT
GTGTGGGGTGGGGTATGCCCTTTGTAACTACAGCTACATAATGGACCTGCTACGTGCACGCGGCG
CACGAGCGTTTATAGAAGCTTGATAAAGCTGAGAGTTGAGGAGTTAGAAGCTTGATAAAGAGAGT
TGAGGAGTTACTGGCAACCAGGGGCCTTACTAGCCGGTCAGTAACGGTTGTTCCAGACACGGAAC
TTCCCGGCACCCGGCATGAGGGCTTCGAATAACGTGTTCACGGGGTCGTTTTCAGAGTTCCGTGT
AACCAGTAATCAGAAAGAACGATCCCCGGTTCCTAGTTAGTTGAC
Found at i:932939 original size:20 final size:20
Alignment explanation
Indices: 932914--932954 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
932904 CGCATATCGC
932914 AGCACGTAGGGGTGGACCGT
1 AGCACGTAGGGGTGGACCGT
*
932934 AGCACGTGGGGGTGGACCGT
1 AGCACGTAGGGGTGGACCGT
932954 A
1 A
932955 TCTCTCTCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.46, T:0.15
Consensus pattern (20 bp):
AGCACGTAGGGGTGGACCGT
Left flanking sequence: Indices 932414 -- 932913
CACAATGAGCTGGCTGATTCCTGCCTGCTTCGACACTGCGGGAGGGAACAGACCCTGCCCACGTG
TAACCTCATTAGCACACCTCAAACGCAATAGTTGCTATCGGCGGAACTACCGATACCGTAAGATG
ATAGAACCAACCCTTGCGTATATGAATTGATTGCCTGCTGGTATATAGATATATCACTAACTCAC
TGCGGTAGCTTGACTTTCTAACAGGTGAGAACCGGCGCGGCGAGCTTGGGAGAGGCAGGATTCGA
ACCTACGTAGAAAACCTCCAACAGATTTACAGTCTGCCGCTTTAAACCACTCGGCCACTCTCCCC
GGCAAACCCAATCACTCCTATACCCCCACCCACTCACTATATAGATATATAGTACTGATATATAG
TACGTACTTAGGCAGGCGCAGCACGCCCCCTCTCCCGCTTCAGGTGGTAAGCTACAGAATAGGGA
TTCCACAAGGATCACCGATATCACCGCAAGTGCACCGCATATCGC
Right flanking sequence: Indices 932955 -- 933454
TCTCTCTCTCCTCGCCTGACTGAGCCGTCCGTCCCCTAGTACAATGTGTGTGGGGTGGGGTATGC
CCTTTGTAACTACAGCTACATAATGGACCTGCTACGTGCACGCGGCGCACGAGCGTTTATAGAAG
CTTGATAAAGCTGAGAGTTGAGGAGTTAGAAGCTTGATAAAGAGAGTTGAGGAGTTACTGGCAAC
CAGGGGCCTTACTAGCCGGTCAGTAACGGTTGTTCCAGACACGGAACTTCCCGGCACCCGGCATG
AGGGCTTCGAATAACGTGTTCACGGGGTCGTTTTCAGAGTTCCGTGTAACCAGTAATCAGAAAGA
ACGATCCCCGGTTCCTAGTTAGTTGACTTCTTCAATCAGGTATTGTGGAACCCCTACGTTACGGC
ATGTGACCGAGAACAAAGGTGAGCTGGTATCGCCGTTATGGCAGGGCACCCCACCCCACCGCCAT
ATAACTGTATGTTCATTGTTGGGCGTTACTGGCGTCGGAACAGTA
Found at i:933139 original size:29 final size:30
Alignment explanation
Indices: 933079--933141 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
933069 CGAGCGTTTA
933079 TAGAAGCTTGATAAAGCTGAGAGTTGAGGAGT
1 TAGAAGCTTGATAAA-C-GAGAGTTGAGGAGT
933111 TAGAAGCTTGATAAA-GAGAGTTGAGGAGT
1 TAGAAGCTTGATAAACGAGAGTTGAGGAGT
933140 TA
1 TA
933142 CTGGCAACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 16 0.52
32 15 0.48
ACGTcount: A:0.37, C:0.05, G:0.33, T:0.25
Consensus pattern (30 bp):
TAGAAGCTTGATAAACGAGAGTTGAGGAGT
Left flanking sequence: Indices 932579 -- 933078
TGCTGGTATATAGATATATCACTAACTCACTGCGGTAGCTTGACTTTCTAACAGGTGAGAACCGG
CGCGGCGAGCTTGGGAGAGGCAGGATTCGAACCTACGTAGAAAACCTCCAACAGATTTACAGTCT
GCCGCTTTAAACCACTCGGCCACTCTCCCCGGCAAACCCAATCACTCCTATACCCCCACCCACTC
ACTATATAGATATATAGTACTGATATATAGTACGTACTTAGGCAGGCGCAGCACGCCCCCTCTCC
CGCTTCAGGTGGTAAGCTACAGAATAGGGATTCCACAAGGATCACCGATATCACCGCAAGTGCAC
CGCATATCGCAGCACGTAGGGGTGGACCGTAGCACGTGGGGGTGGACCGTATCTCTCTCTCCTCG
CCTGACTGAGCCGTCCGTCCCCTAGTACAATGTGTGTGGGGTGGGGTATGCCCTTTGTAACTACA
GCTACATAATGGACCTGCTACGTGCACGCGGCGCACGAGCGTTTA
Right flanking sequence: Indices 933142 -- 933641
CTGGCAACCAGGGGCCTTACTAGCCGGTCAGTAACGGTTGTTCCAGACACGGAACTTCCCGGCAC
CCGGCATGAGGGCTTCGAATAACGTGTTCACGGGGTCGTTTTCAGAGTTCCGTGTAACCAGTAAT
CAGAAAGAACGATCCCCGGTTCCTAGTTAGTTGACTTCTTCAATCAGGTATTGTGGAACCCCTAC
GTTACGGCATGTGACCGAGAACAAAGGTGAGCTGGTATCGCCGTTATGGCAGGGCACCCCACCCC
ACCGCCATATAACTGTATGTTCATTGTTGGGCGTTACTGGCGTCGGAACAGTATCAGTATAAAGA
GCAGAGGGGTTGTTGCTCAGCTCTCTATATGGTCAGGTCAGGGTCAGTGCTCTCTATATACGTCA
TGGTCCAGGGTACGCGTTGATATGGGCAGGGACGGAGGGCGACCATATGGAAAAACGGAGCGTTC
CCCGTACCTTGTGGGGTGTTTCGGTGCACACGGCGCCCTCTTCGA
Found at i:935367 original size:5 final size:5
Alignment explanation
Indices: 935357--935387 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
935347 CACTCTCTGA
935357 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC A
1 ACAAC ACAAC ACAAC ACAAC ACAAC ACAAC A
935388 GCGGCAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.39, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAC
Left flanking sequence: Indices 934857 -- 935356
GCGCTTATAATAGCCATAGCCATATATGGTCGATAGGGGCAGCTGCAGCAGGGGCTTCTCTGGAA
GAAGATCTCATAGGGGAGAGGCGGGATGAAGATCCATATGCATGTACGAATGAAGGTACAGATCG
ACGATCCAATTGATCTGGGCGGGAACCGAGGCATAGCAATAGTCGGCGTAGAGCTCACGTATGTA
TCAAGGTGCAACTAATTGGAAACACCAACCAAAGGCCTGCCTGTCATAGTCTCCCCAAGTGTCAC
GGGGGTTGAGCCTATTCTATGAGCACCTCGGGAGGGAGGTCAACATATGGAAACCTGTTTTCGTA
CATCGACCCAGCTACGAAAACCCCAGTGTGCTCCTGCGCACTCCGGCTTTCAAGCCTCCGGCTAT
TATATTATATATGGTTTGTAGTTGGATATAACACGCACCATATATAATCGGTAGTTGGGCAGCGA
ATGGAAGAAATGGATCTGTGCCGCTATCCAGCCGTCACTCTCTGA
Right flanking sequence: Indices 935388 -- 935887
GCGGCAACAACCAACAACAACAACAACCACAACCACAACCACATAGAGACGGACTGACTGACTGA
CTGACGGCGTGGCGTGGCGTGGCGTGGCTAACTAACTTGCCGAGATAGAAATGTTTCTCTTAGTG
ATGCGGATCCGCGTTGCGTAGGTCAGAAGAAATAAGAGAACATAGGTACACTTGGCATCAATCAT
ATATAGTTGTTGTTGTTGCCAGCTGGAGGAAGGTTCACAGTATGAATTTCTATTAGGGAAGATGT
GCGTGCGGTATCGGTTCACTTAGGCATCATGGGAGGGTCAGATAGCCTATAAGCTTTTTCATGCA
CGAACCGAAGCAGGCTCAGTTGGTGGTCAGCTCATTCATTCTCCAACATCATATCGCGCATGTGC
GGCTCATACGAACTCTGCTTACCTACCCGGTTACGCTTCCATCCCCATCGGTCTCGAGGTCGGAA
CCCCAACAATCGATTTCTCTCTCCTTCGTTGACTAATCCAGCTTT
Found at i:935405 original size:3 final size:3
Alignment explanation
Indices: 935356--935426 Score: 53
Period size: 3 Copynumber: 25.0 Consensus size: 3
935346 TCACTCTCTG
* **
935356 AAC AAC -AC AAC -AC AAC -AC AAC -AC AAC -AC AAC AGC GGC AAC AACC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA-C
* *
935400 AAC AAC AAC AAC AAC CAC AAC CAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC
935427 CACATAGAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
2 10 0.19
3 41 0.76
4 3 0.06
ACGTcount: A:0.56, C:0.39, G:0.04, T:0.00
Consensus pattern (3 bp):
AAC
Left flanking sequence: Indices 934856 -- 935355
TGCGCTTATAATAGCCATAGCCATATATGGTCGATAGGGGCAGCTGCAGCAGGGGCTTCTCTGGA
AGAAGATCTCATAGGGGAGAGGCGGGATGAAGATCCATATGCATGTACGAATGAAGGTACAGATC
GACGATCCAATTGATCTGGGCGGGAACCGAGGCATAGCAATAGTCGGCGTAGAGCTCACGTATGT
ATCAAGGTGCAACTAATTGGAAACACCAACCAAAGGCCTGCCTGTCATAGTCTCCCCAAGTGTCA
CGGGGGTTGAGCCTATTCTATGAGCACCTCGGGAGGGAGGTCAACATATGGAAACCTGTTTTCGT
ACATCGACCCAGCTACGAAAACCCCAGTGTGCTCCTGCGCACTCCGGCTTTCAAGCCTCCGGCTA
TTATATTATATATGGTTTGTAGTTGGATATAACACGCACCATATATAATCGGTAGTTGGGCAGCG
AATGGAAGAAATGGATCTGTGCCGCTATCCAGCCGTCACTCTCTG
Right flanking sequence: Indices 935427 -- 935926
CACATAGAGACGGACTGACTGACTGACTGACGGCGTGGCGTGGCGTGGCGTGGCTAACTAACTTG
CCGAGATAGAAATGTTTCTCTTAGTGATGCGGATCCGCGTTGCGTAGGTCAGAAGAAATAAGAGA
ACATAGGTACACTTGGCATCAATCATATATAGTTGTTGTTGTTGCCAGCTGGAGGAAGGTTCACA
GTATGAATTTCTATTAGGGAAGATGTGCGTGCGGTATCGGTTCACTTAGGCATCATGGGAGGGTC
AGATAGCCTATAAGCTTTTTCATGCACGAACCGAAGCAGGCTCAGTTGGTGGTCAGCTCATTCAT
TCTCCAACATCATATCGCGCATGTGCGGCTCATACGAACTCTGCTTACCTACCCGGTTACGCTTC
CATCCCCATCGGTCTCGAGGTCGGAACCCCAACAATCGATTTCTCTCTCCTTCGTTGACTAATCC
AGCTTTGGTTCCTGTGGCAGGGAGAAGTAACTTCGGCTGAGGGAA
Found at i:935427 original size:12 final size:12
Alignment explanation
Indices: 935392--935430 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
935382 ACAACAGCGG
*
935392 CAACAACCAACAA
1 CAACAA-CAACCA
935405 CAACAACAACCA
1 CAACAACAACCA
*
935417 CAACCACAACCA
1 CAACAACAACCA
935429 CA
1 CA
935431 TAGAGACGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 18 0.75
13 6 0.25
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (12 bp):
CAACAACAACCA
Left flanking sequence: Indices 934892 -- 935391
GGGGCAGCTGCAGCAGGGGCTTCTCTGGAAGAAGATCTCATAGGGGAGAGGCGGGATGAAGATCC
ATATGCATGTACGAATGAAGGTACAGATCGACGATCCAATTGATCTGGGCGGGAACCGAGGCATA
GCAATAGTCGGCGTAGAGCTCACGTATGTATCAAGGTGCAACTAATTGGAAACACCAACCAAAGG
CCTGCCTGTCATAGTCTCCCCAAGTGTCACGGGGGTTGAGCCTATTCTATGAGCACCTCGGGAGG
GAGGTCAACATATGGAAACCTGTTTTCGTACATCGACCCAGCTACGAAAACCCCAGTGTGCTCCT
GCGCACTCCGGCTTTCAAGCCTCCGGCTATTATATTATATATGGTTTGTAGTTGGATATAACACG
CACCATATATAATCGGTAGTTGGGCAGCGAATGGAAGAAATGGATCTGTGCCGCTATCCAGCCGT
CACTCTCTGAACAACACAACACAACACAACACAACACAACAGCGG
Right flanking sequence: Indices 935431 -- 935930
TAGAGACGGACTGACTGACTGACTGACGGCGTGGCGTGGCGTGGCGTGGCTAACTAACTTGCCGA
GATAGAAATGTTTCTCTTAGTGATGCGGATCCGCGTTGCGTAGGTCAGAAGAAATAAGAGAACAT
AGGTACACTTGGCATCAATCATATATAGTTGTTGTTGTTGCCAGCTGGAGGAAGGTTCACAGTAT
GAATTTCTATTAGGGAAGATGTGCGTGCGGTATCGGTTCACTTAGGCATCATGGGAGGGTCAGAT
AGCCTATAAGCTTTTTCATGCACGAACCGAAGCAGGCTCAGTTGGTGGTCAGCTCATTCATTCTC
CAACATCATATCGCGCATGTGCGGCTCATACGAACTCTGCTTACCTACCCGGTTACGCTTCCATC
CCCATCGGTCTCGAGGTCGGAACCCCAACAATCGATTTCTCTCTCCTTCGTTGACTAATCCAGCT
TTGGTTCCTGTGGCAGGGAGAAGTAACTTCGGCTGAGGGAAATGA
Found at i:937907 original size:28 final size:28
Alignment explanation
Indices: 937867--937922 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
937857 GAGGGTTAAT
937867 AAGACACAGCAAGCACCTCCCCATCCAC
1 AAGACACAGCAAGCACCTCCCCATCCAC
937895 AAGACACAGCAAGCACCTCCCCATCCAC
1 AAGACACAGCAAGCACCTCCCCATCCAC
937923 GGGGCGGGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.46, G:0.11, T:0.07
Consensus pattern (28 bp):
AAGACACAGCAAGCACCTCCCCATCCAC
Left flanking sequence: Indices 937367 -- 937866
ATACAAAGGGAGTAGCTGGATCGTTGGGGACGCGACACGGACGCCTGCCTCTCGTGCAAGGTGAC
GGGGGGTCTAGTGTCGGGAAGTCACGCCCGCGAGCCCCAGGGGTACGCCCCTCGGGTCGAGTCGA
AGCGGAACTGGTCAGCAAGTCTGAACCAGTAGAAGTCCAGGAATGGACCTTAGGAGTCCCTGCGT
GATTGTGGTCGCCGAAAGGCCCGCAACACCGGGGCGCGGAGGGGCCGCTGCCATAAGACGCTCAC
ATCACCGATCATGTGCGCGGAGCGCCGGTAGATAACGGCTAGGGTCGGGACCGGGGGTTTACAAC
ATCTTCCCATGCGTGCGATGCCGCAACACCGTAGGGGGGGCTTCAACCGTAGCGGCCCGATCGTC
ACTACCGTGTAGGGTATTCCAGGGAAACCCGGGCTGCTTACGGCCTCTTGCTCGAACCAGAGTGA
ACCCCTTCAACCGTGGACCAGCAATATGCAGGAGGGAGGGTTAAT
Right flanking sequence: Indices 937923 -- 938422
GGGGCGGGCGCGCTTGGAACGCACCTTCATCTGGCAACCGAGGCAGGGTGCCGTGATCCTACAAA
GCCGGAACAATCCCATCGCCTAGGGGGTGTGGGCTGCGGCCCCAATACAGCATTGGGGTGGAAAC
ATCCGTCGCCCGTTACAAATAGCAGGTTCTACAGGTGGCGGGCTCTACGAAGTATCCGACCGGGC
CGAGGCGCACTCCCATCACCGAGGTACGCCATCTTCCCGCATAGGGGATATACCTGCGAATCGTA
TCGATCATGGTCCCGATACTTTGGGGCTGGACCCCAGACAACCCTCAGGGGCGATTGTGGTTCAG
TGCGGAGCCATGAGCTTGCTCCACCCACGTGGCGGGCATGCTTTATACACAACCTCTGTCTGTGC
CATGGTGTGGGTCTCGCCGTCCGTACCCTGTGGGCTTGTGTTGCTGACGGTGGTGTGGTTCTCAG
TTGGGGTACCCCGGTTGCGTGCCGGGTGTTGCCCCGGGAGCCGGT
Found at i:945283 original size:13 final size:13
Alignment explanation
Indices: 945265--945291 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
945255 AGCTCGCTAT
945265 GCCCTAGTATACG
1 GCCCTAGTATACG
945278 GCCCTAGTATACG
1 GCCCTAGTATACG
945291 G
1 G
945292 GAGCCCGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (13 bp):
GCCCTAGTATACG
Left flanking sequence: Indices 944765 -- 945264
TGGCTGAGCTTCATAGTCTACCCGGGAGTGAGTGAGTGAATAGCCGGCACCAGCAGTGAGATCTG
TCACGTCCATGAGCGATCAAGTCGTATATGACAATGCGGTGTAGCAACAACACGTATATGGTATA
ACGCTGTGCCCCCCCGCCCGCATATAGTTGTTGCGTGTAACTGGAACGCAACTGAGTGTCAGGTA
CCACCATACCTGCGTTAAATGATGCATGGATGTCGGCAAACCGTGATACCGCCCCACCCCGGCCT
CTCTATATAACCCCTGTTGTGAGCTTTCGGTTGCTTTGTTTCATACCATACCATACCATACCCCA
CCGCACCTCACATATATATAATCGCGCTTAGCTGGCGCGCGCAGTTCACATGATGTTGGTTGTAT
TCAAGCCTCCAGTATGTGGCTTCGCCCGATCTGCTCGCACGCACTAGGCGTACCATGCTGTAGCG
GGGTGTGCTATGCCCGGAATCTGCGTATACTAGTCAGCTCGCTAT
Right flanking sequence: Indices 945292 -- 945791
GAGCCCGCTATGCCTGGGAATCTGCCTATACTAGTCAGCCCATTGCACTTTGGTTCATAGATCAC
CCTTGATATATCACACGTGGCGATTGATATATACGAGAATGAGGCTGGACCGGCCTACGATACAA
GTCAGAACAATACGGTCAATCCGCTAGCAGCATCACGAAGGCATACGGGACATCCAAGAGCATAC
GGAGTTTGCCCCCACCCCACCCCACCGTGCGTCAAACTAACTAACGGCGGACCCTGTGGGTGAAA
CACGGTTGTGGTCCCAAGCAGCATATCATTAACGTGGTGTCGGAAATCCAGTCTTCGTTATATGC
GTACGGATATGGGTGGGGGCTATCGACGTGTATAAATCCAGTCTGCCCTAGCGCAAACCACATCC
GATCCTAAGCGTTTGATCTTCCACATATGAGTTACCATACGGGATAGTATCAGGTTCAAGCGTTT
ACCGTAGATCACGAGCATTGCAAGGGAGTATATGATTCGGGGGTA
Found at i:946723 original size:12 final size:12
Alignment explanation
Indices: 946688--946724 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
946678 TAGGACAGGA
* *
946688 ACAACAACAACA
1 ACAACCACAACT
946700 ACAACCACAACT
1 ACAACCACAACT
946712 ACAACCACAACT
1 ACAACCACAACT
946724 A
1 A
946725 TAACTCGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.57, C:0.38, G:0.00, T:0.05
Consensus pattern (12 bp):
ACAACCACAACT
Left flanking sequence: Indices 946188 -- 946687
CTTGGGTGGGGGAGCAACCGGCATATACTATATACGCCCAGCTACGTACTTGAGTGTCTTCGGAT
CGACTGCGCTTTGCCCTTTCCGGTGGTCTGGCCGGGTTATATAGAGAGGCACGAGTGTGTTTTGT
GTGCGGATTCGGCGTCTAGGGCTGCCGTATATATACTATACTACTCCCCGCATCCTCAAGTATAT
CGGTCCGGGGGGAACATGGGAACATGACTGCTCGATTACGTAGCAACGCTTACCCCCCGCATACC
GCCCCGAATACGGGCCCCGAAACGCGCACCTGTTGGTCGCACCGTATCTATCTCTGTTCTGAATG
TTGGTGGATTGACTCCATCAATCCTCCCCGGTCTGTATCATGCTAATGGATGGATGAGAAAACTT
CAAGCTGTCGTCTAGTATACGAATCGAATGAGATTCAAGTCCCAATATACGGTGGCAGAAGCAAG
GTACTAGAAGGTTGGTTATTCAACTAGCTGTCTAGTAGGACAGGA
Right flanking sequence: Indices 946725 -- 947224
TAACTCGGACGAAGTAGAAGTAGAAGAGAAGATATCTCTGTTCTTGTCGTAACAACTGATACCGC
AACAACAACCTTACCACCCACCCTGTTTGTACGTCCACCCACCCCCAGTAAACACCGCTACTGAA
TACCGCCCACAACAACGGGTTCGCTCGAGCAGGTTCGGGGGGATGGAGCCTAACCCACTTCAAGT
ACGTAGTGCACAGTCGTCATTAATAAAGCAGTGGGCGGAGCATTGGACACCAGAGGCCACAGATG
CAGGAGACAGCCCAAGAAGGAAGCCCAAGCTATAACTCGCCCCCGGATCACCGAGCAAAGCCAAT
CCTGCTAGCGGGGTCCGTGCAGCGACGAGGTTCCAGCCCCGGCTCCATAGGATGCGATCCCCCCG
GCAATTCATCGTGGGCGACTGACCAAACTCGCGCGTCATTGTTGCTACGTACGAAGGGGCGGCTC
TTATCACAAATTGGGAGCATTAACATGGTTTTGATTGATAAGTCC
Found at i:946729 original size:18 final size:18
Alignment explanation
Indices: 946688--946722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
946678 TAGGACAGGA
*
946688 ACAACAACAACAACAACC
1 ACAACTACAACAACAACC
*
946706 ACAACTACAACCACAAC
1 ACAACTACAACAACAAC
946723 TATAACTCGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.40, G:0.00, T:0.03
Consensus pattern (18 bp):
ACAACTACAACAACAACC
Left flanking sequence: Indices 946188 -- 946687
CTTGGGTGGGGGAGCAACCGGCATATACTATATACGCCCAGCTACGTACTTGAGTGTCTTCGGAT
CGACTGCGCTTTGCCCTTTCCGGTGGTCTGGCCGGGTTATATAGAGAGGCACGAGTGTGTTTTGT
GTGCGGATTCGGCGTCTAGGGCTGCCGTATATATACTATACTACTCCCCGCATCCTCAAGTATAT
CGGTCCGGGGGGAACATGGGAACATGACTGCTCGATTACGTAGCAACGCTTACCCCCCGCATACC
GCCCCGAATACGGGCCCCGAAACGCGCACCTGTTGGTCGCACCGTATCTATCTCTGTTCTGAATG
TTGGTGGATTGACTCCATCAATCCTCCCCGGTCTGTATCATGCTAATGGATGGATGAGAAAACTT
CAAGCTGTCGTCTAGTATACGAATCGAATGAGATTCAAGTCCCAATATACGGTGGCAGAAGCAAG
GTACTAGAAGGTTGGTTATTCAACTAGCTGTCTAGTAGGACAGGA
Right flanking sequence: Indices 946723 -- 947222
TATAACTCGGACGAAGTAGAAGTAGAAGAGAAGATATCTCTGTTCTTGTCGTAACAACTGATACC
GCAACAACAACCTTACCACCCACCCTGTTTGTACGTCCACCCACCCCCAGTAAACACCGCTACTG
AATACCGCCCACAACAACGGGTTCGCTCGAGCAGGTTCGGGGGGATGGAGCCTAACCCACTTCAA
GTACGTAGTGCACAGTCGTCATTAATAAAGCAGTGGGCGGAGCATTGGACACCAGAGGCCACAGA
TGCAGGAGACAGCCCAAGAAGGAAGCCCAAGCTATAACTCGCCCCCGGATCACCGAGCAAAGCCA
ATCCTGCTAGCGGGGTCCGTGCAGCGACGAGGTTCCAGCCCCGGCTCCATAGGATGCGATCCCCC
CGGCAATTCATCGTGGGCGACTGACCAAACTCGCGCGTCATTGTTGCTACGTACGAAGGGGCGGC
TCTTATCACAAATTGGGAGCATTAACATGGTTTTGATTGATAAGT
Found at i:950961 original size:17 final size:17
Alignment explanation
Indices: 950939--950972 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
950929 ATGCGGGCGA
950939 GTAACCTCCGCTATTTC
1 GTAACCTCCGCTATTTC
950956 GTAACCTCCGCTATTTC
1 GTAACCTCCGCTATTTC
950973 TCGCCGCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.35, G:0.12, T:0.35
Consensus pattern (17 bp):
GTAACCTCCGCTATTTC
Left flanking sequence: Indices 950439 -- 950938
GTTGATAGTGCGTCAATGTGGTGGTATGTCAAGCCTATGTACCCACCCATAGCATAGGTATGTTG
GAATGCTGTAAATGGTTACTTGTCGACAACGCTACATATAAGATGGTTCGTGTACAATGTTTCGG
TCGTTCGGATGAGCAGCATGGAGAAGTGACCACCCTCCACTCTGTATCTCAACCAGCGGAGTGAC
GCCTCTTGTATATGGAGTCTGGTCCCTCGCTGTAACGGTGAGGTGCTTCGGGACTAGCATAAACG
CTATCTACGAAGCGATAGTAACGAAGACTGATCTCAAGGAACCAAGTATCAGCACGAACTTGCAA
GTGATTCTGGCTTTCGGCGGCCGCTCATTAGAGATTTGTCACGATGGCTCCGCACACACCGGGAT
ATAACATGTATACGTGGTGGCTATACGCGGCCATGAAACAGATTCCCATATAGCCGGGTTGGACG
GAACGACCGCCGCACATACAAAATCGCTAGATCGGATGCGGGCGA
Right flanking sequence: Indices 950973 -- 951472
TCGCCGCTACGCTACGCTACGCTACGCTACCCTACGCTACGTCATGATTGATTGCATGCATGCAT
GCATGCTGCGAGATGAGACGTCTAATCCCGTACGTCGATGGTGCCTTGTTGTGTGGGTGTTATCA
TCGCCCTATCCCGGCTGCAAAAATCAGAGTGCCCGATCCGTGTAGACAGGGCCTCAGGTGACCAC
GAGTGTGAAGCAAGGAACTGACCAAGCAACCGGTGAGCGGCGGGTTTACCCGTGATTCTCCAACC
GCTAGAGTTTCGGTGGATATATCCGGCATATCGACAAGGTTCATGCCACCGGTTCTTCCAGCGTA
ACGAGGTGCTGGTCGTAAGGTTCGTGTCGTCGGTACTCGGCTTCAGTAAAGTGGTAGAACGTTGG
CTGGTTCGTTCGGCCAATCTCTCTTGGGTGGGACCAATCGATTCCCGGGAACACCGCGATGCGAG
CCGGCGCGTAATCCGACTTCTCGTATTGACGGATCACTTCGTATC
Found at i:950987 original size:5 final size:5
Alignment explanation
Indices: 950977--951013 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
950967 TATTTCTCGC
*
950977 CGCTA CGCTA CGCTA CGCTA CGCTA CCCTA CGCTA CG
1 CGCTA CGCTA CGCTA CGCTA CGCTA CGCTA CGCTA CG
951014 TCATGATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.19, C:0.43, G:0.19, T:0.19
Consensus pattern (5 bp):
CGCTA
Left flanking sequence: Indices 950477 -- 950976
GTACCCACCCATAGCATAGGTATGTTGGAATGCTGTAAATGGTTACTTGTCGACAACGCTACATA
TAAGATGGTTCGTGTACAATGTTTCGGTCGTTCGGATGAGCAGCATGGAGAAGTGACCACCCTCC
ACTCTGTATCTCAACCAGCGGAGTGACGCCTCTTGTATATGGAGTCTGGTCCCTCGCTGTAACGG
TGAGGTGCTTCGGGACTAGCATAAACGCTATCTACGAAGCGATAGTAACGAAGACTGATCTCAAG
GAACCAAGTATCAGCACGAACTTGCAAGTGATTCTGGCTTTCGGCGGCCGCTCATTAGAGATTTG
TCACGATGGCTCCGCACACACCGGGATATAACATGTATACGTGGTGGCTATACGCGGCCATGAAA
CAGATTCCCATATAGCCGGGTTGGACGGAACGACCGCCGCACATACAAAATCGCTAGATCGGATG
CGGGCGAGTAACCTCCGCTATTTCGTAACCTCCGCTATTTCTCGC
Right flanking sequence: Indices 951014 -- 951513
TCATGATTGATTGCATGCATGCATGCATGCTGCGAGATGAGACGTCTAATCCCGTACGTCGATGG
TGCCTTGTTGTGTGGGTGTTATCATCGCCCTATCCCGGCTGCAAAAATCAGAGTGCCCGATCCGT
GTAGACAGGGCCTCAGGTGACCACGAGTGTGAAGCAAGGAACTGACCAAGCAACCGGTGAGCGGC
GGGTTTACCCGTGATTCTCCAACCGCTAGAGTTTCGGTGGATATATCCGGCATATCGACAAGGTT
CATGCCACCGGTTCTTCCAGCGTAACGAGGTGCTGGTCGTAAGGTTCGTGTCGTCGGTACTCGGC
TTCAGTAAAGTGGTAGAACGTTGGCTGGTTCGTTCGGCCAATCTCTCTTGGGTGGGACCAATCGA
TTCCCGGGAACACCGCGATGCGAGCCGGCGCGTAATCCGACTTCTCGTATTGACGGATCACTTCG
TATCAAGGTCCAGTACCTACCCCGCCACATCGATAAGGGATATAC
Found at i:951927 original size:22 final size:22
Alignment explanation
Indices: 951902--951946 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
951892 TCACCATATG
951902 TGAGCTCTAACCAGATCGCTAC
1 TGAGCTCTAACCAGATCGCTAC
951924 TGAGCTCTAACCAGATCGCTAC
1 TGAGCTCTAACCAGATCGCTAC
951946 T
1 T
951947 CTGGCAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (22 bp):
TGAGCTCTAACCAGATCGCTAC
Left flanking sequence: Indices 951402 -- 951901
GATTCCCGGGAACACCGCGATGCGAGCCGGCGCGTAATCCGACTTCTCGTATTGACGGATCACTT
CGTATCAAGGTCCAGTACCTACCCCGCCACATCGATAAGGGATATACGTTTACTAGTGTCGTACG
AAGCACTCGACAGCGGCACAAACACAACCAACAACGTTGCACGCACATAGGTGAGAGGTCGTTGT
GCGGGAGGCCGGTGACTCGGTTGAACAGCAGGGAGAAGTGACAGTACGGTACGGTACGGGAGGAA
GGAAGACGTTTTCGATTCTTGTACCGTACAAAGGGGTTCAGAGAAACCAGTCCGTCTTCGCTCGC
CCCACGCTGAACTGAGGGTGCTTGCACGTTGATATAATAATGTTTGATTACTGCTTTAGGGCTCA
TCGTAACTGGTGGTCCATAAAGCACCGAACGAACCAGTCACCAACCAGCTGCACCGCAGCCGTAA
CCTAGTAGTCAGGCGGGACCAGACCTCCCGCAACCTCACCATATG
Right flanking sequence: Indices 951947 -- 952446
CTGGCAGCCATGGCTATAGGGGAACCATACCATACGTGCAGGAGCTCTCCATCGGCTCCTCGCAA
CACCAGCCCCAGCATATAACTCGGTCGACTCTCGTCAATAGTAGGCGAGTGATTCCATACCTCGC
ACGATGGAATGCGCCCATCTCTATTGCATGATAGAGGGAGAGATTCCACAGTACCAGACTTAATC
GACTCCCAACTCTGGGGTACCTCAAACGATGTTCCAATACGAGAATCGGGGAGCACAGGTGGGTT
GTTTCGTAGAACAACCTCACACGGTTGACTTGGATGGTGGCTCATATTGAATAAACCACACCCGG
CCCAAGTAACACCCATAAAGGTTCGACACCGCCTGAAGGCGGGTCCCTGCAAGACAAGACTTAGG
GAATGGTCCCGCGGGGGTAGCTCCGCAGCTAGTTCGCCAAGCTCGCACCGGATGAACAAGGCCTA
GGATGACTCCTTGGAGGAGCACCGCAGCCAACTCCCATCACGTTG
Found at i:952527 original size:13 final size:13
Alignment explanation
Indices: 952509--952534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
952499 TAGGCCGCCC
952509 ACCGTGTGAGGGA
1 ACCGTGTGAGGGA
952522 ACCGTGTGAGGGA
1 ACCGTGTGAGGGA
952535 GCCGAGGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.46, T:0.15
Consensus pattern (13 bp):
ACCGTGTGAGGGA
Left flanking sequence: Indices 952009 -- 952508
CAACACCAGCCCCAGCATATAACTCGGTCGACTCTCGTCAATAGTAGGCGAGTGATTCCATACCT
CGCACGATGGAATGCGCCCATCTCTATTGCATGATAGAGGGAGAGATTCCACAGTACCAGACTTA
ATCGACTCCCAACTCTGGGGTACCTCAAACGATGTTCCAATACGAGAATCGGGGAGCACAGGTGG
GTTGTTTCGTAGAACAACCTCACACGGTTGACTTGGATGGTGGCTCATATTGAATAAACCACACC
CGGCCCAAGTAACACCCATAAAGGTTCGACACCGCCTGAAGGCGGGTCCCTGCAAGACAAGACTT
AGGGAATGGTCCCGCGGGGGTAGCTCCGCAGCTAGTTCGCCAAGCTCGCACCGGATGAACAAGGC
CTAGGATGACTCCTTGGAGGAGCACCGCAGCCAACTCCCATCACGTTGAGCAGGACCTTACCAAA
GCAACCACTCCCGTGATTCCAACCTAGTTGCTACCTAGGCCGCCC
Right flanking sequence: Indices 952535 -- 953034
GCCGAGGAGGGACTCCCCGTCCGTTACAACGGTTTACAGCGCCAGCCGGGATAACGGTAGATCCC
TTCTATGGACGTCAGGTCCATCTCGCACACTGGGGTGCGGCCCCCCTCCAACCATGAATTCGGAT
GCAGCTCCAAGGTTACCGATGTTGCGTTGTTACGATACGCGCACAGGATGGAGCAGTGTTATATA
AGTAAGGTGGTGGGCTTTCCATATGTCTTCTACCAACCAGGAAACCGATTACGTCTAGACTGGAA
GAACGGATTATAGAGCTTTACAACCTGAAGGTGCTCTCCAATCTCGTGTGGGGGGAGCCGGCGGA
ACAGAGTCATTCTGGTGTGTGGACCCGACCTTTTCCATCCATACACGGCGAAACACCCTAGCGGG
GACGGACTCAACCGGTGCTGGTATTGTTAATGACGCACACTTGTTCTGCGAATACTTGTGTCAGA
TTGGTCTTCTGTTCAGGAGGAATCCTCTACCGAGCCTTCACCCTT
Found at i:956402 original size:29 final size:29
Alignment explanation
Indices: 956369--956426 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
956359 GTCACCGTGG
956369 ATCAACACGACACCGCGTTCTCACCCGGC
1 ATCAACACGACACCGCGTTCTCACCCGGC
956398 ATCAACACGACACCGCGTTCTCACCCGGC
1 ATCAACACGACACCGCGTTCTCACCCGGC
956427 CTTTATAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.45, G:0.17, T:0.14
Consensus pattern (29 bp):
ATCAACACGACACCGCGTTCTCACCCGGC
Left flanking sequence: Indices 955869 -- 956368
AACAACTCCTGGGCGCGACCCAAGCCGGTGGGTACAACGGGGCACTCCAACTCTTATGCGGCGCA
ATGGCCAATACTTGGAGCGCTTCGCGTAGCCAACCGAAAGACAGATGGCGTGGTGGTAGACTACT
TCCGCCCCGTACATATGCACGAGTATTCCCAGTAAGTGTGCCGTTCCCGGTAAGTTGCGGTACGG
CCTTCATGGTACCTGAACATGATTCATAAAGCAGCCCACGCTGCGTCTGATACTGTGTCGATAGA
CACAGCTCCCCGTGTGGTTATTGTAGAAGGGGTCCGAATCGACGATGCTAGCGTCAGGTTAACGT
AGCGCCAGTTTCCGGCATTGCCATACTTGACGAAGCGGTTTCCGCCATACACGAACATCTGCCCG
CCTCTGGCCGATAGAACGGACCTACTTAGATTGTGAATGGCAGCGCAATACAGATAACCAACTCC
CTAGGCGCAACGGTAGCGTATTACCCACCCATGTTGTCACCGTGG
Right flanking sequence: Indices 956427 -- 956926
CTTTATAAACCACCATGCTCCCATCTACTGCCCTCACAGCCGCTTACGCGGAAGGAACACCCTGA
CTACTTAGAAAGGGTGAGCCACGCCGTGTTGTTCCGGCCTAGATGTTGCTCTCCGACGCTCCGTG
GCAGTACACTCTGCCTTGCGCTGCTCCCAACCGTACAACAGGCCGCGCTCATGCGCCACCCACCA
TGTTGCGGGAGCGTACTCTGTGACAGACGGGAATTCCCCGTAGGGAACTGGCAACGTCTAGAGGA
AAGCAGAACATGGTAGTTCGACCCCCCAATCAACCACCAACACACAAAGCAGCCTTCAGCCTACG
TGCGCCTTTCGCGGAGAACGTTGTTCCCGTTCGTCCCAGTTCTCCGGTTGAGCACGGCGAGCGAT
ACCGTACCTGAACATGGAGCGGTACCGTACCGAGATACTAGTGCCGCACTAGCGTATGTAGCTAG
CGGCTGTCCCGCCCACCAACACGTATCCGATTCCACAACACACGT
Found at i:957851 original size:5 final size:5
Alignment explanation
Indices: 957841--957866 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
957831 CGATCGAAGC
957841 AGCAG AGCAG AGCAG AGCAG AGCAG A
1 AGCAG AGCAG AGCAG AGCAG AGCAG A
957867 TATATGATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.38, T:0.00
Consensus pattern (5 bp):
AGCAG
Left flanking sequence: Indices 957341 -- 957840
GTGGTACCTGTGGTGCCGTCGAATCGCATCTATATGCCCACGAATGATCGATTCAGAACATTCAC
TCAGTATCACATGTTACAGCCGGTAGGAAACTTGCGTAGCGATCCATCGGCACATTGGCCTTCGG
AAAAAGGCTACCGAACATCGGGGGATGCACAACTCACTATCCGGGACCTCTCTATATAACCCCGT
ACTCAGGTGGGTGGAAACAAGGCACACTTATGCCGTGTGGTGCCGCTTATGGTACGTAAAAGGTG
GACCGTACGAACGCCCGTTACCCGCGGGAGGAACGGTCATCTATACGTCAATAAAGCCCGAGTCG
ATGATACGTCAATCAAGCCCGAGTAAAGCCCGAGTCGATGGGTGGATCGGTGGATGTCGACCAGA
CCCCACGACACAGTTACTCGATGGAATGGCCTGAACCAATGCCCTTCGATGATCTCGGTAACATG
AACCTTTTTGTAGTAAGTGATAACTCGGAACCATTCGATCGAAGC
Right flanking sequence: Indices 957867 -- 958366
TATATGATGTGATGTGATGTGTTATGTGATGTGATGTGTGGCAAGTATCATCAACCTTCGTACTA
GTCGGTACTACATAAGGTGAGATCATAAAGGAACACTCACGGTTTATATTGCCATTACCAGCATG
TTACCCACGAAGGAAGTTTGTAACATGCGGTTCCTTCCCGTTGCTACCATGTACCGTTACCGGAC
CGTCAGAGATTCCGGTGCCTGCCGCTAGCTGCATGAACTGGATCTAGGCAGGGAACAGATATCCA
CGACAAATACGTTATACAACTCTACTAACACAACCCTTGTTCGTTTCCCTCAACGCAGGCTGCCA
TATGATGCTTCCTTACGACAGCTGGCTTACGCAGTTACCGTTGGCCGGAACGTTCTACCCACCCC
CCGGCGTGTTGATATATAGAAGAAGGGAGGGAGGTCCATGTATGTATATATTCCCTTCCCCGGCG
TAACCATATAGAAGCCTCATAGTTGCCCTAGTTACGGTGCATCGT
Found at i:957879 original size:5 final size:5
Alignment explanation
Indices: 957871--957904 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
957861 AGCAGATATA
957871 TGATG TGATG TGATG TGTTATG TGATG TGATG TG
1 TGATG TGATG TGATG TG--ATG TGATG TGATG TG
957905 TGGCAAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 22 0.81
7 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (5 bp):
TGATG
Left flanking sequence: Indices 957371 -- 957870
TATATGCCCACGAATGATCGATTCAGAACATTCACTCAGTATCACATGTTACAGCCGGTAGGAAA
CTTGCGTAGCGATCCATCGGCACATTGGCCTTCGGAAAAAGGCTACCGAACATCGGGGGATGCAC
AACTCACTATCCGGGACCTCTCTATATAACCCCGTACTCAGGTGGGTGGAAACAAGGCACACTTA
TGCCGTGTGGTGCCGCTTATGGTACGTAAAAGGTGGACCGTACGAACGCCCGTTACCCGCGGGAG
GAACGGTCATCTATACGTCAATAAAGCCCGAGTCGATGATACGTCAATCAAGCCCGAGTAAAGCC
CGAGTCGATGGGTGGATCGGTGGATGTCGACCAGACCCCACGACACAGTTACTCGATGGAATGGC
CTGAACCAATGCCCTTCGATGATCTCGGTAACATGAACCTTTTTGTAGTAAGTGATAACTCGGAA
CCATTCGATCGAAGCAGCAGAGCAGAGCAGAGCAGAGCAGATATA
Right flanking sequence: Indices 957905 -- 958404
TGGCAAGTATCATCAACCTTCGTACTAGTCGGTACTACATAAGGTGAGATCATAAAGGAACACTC
ACGGTTTATATTGCCATTACCAGCATGTTACCCACGAAGGAAGTTTGTAACATGCGGTTCCTTCC
CGTTGCTACCATGTACCGTTACCGGACCGTCAGAGATTCCGGTGCCTGCCGCTAGCTGCATGAAC
TGGATCTAGGCAGGGAACAGATATCCACGACAAATACGTTATACAACTCTACTAACACAACCCTT
GTTCGTTTCCCTCAACGCAGGCTGCCATATGATGCTTCCTTACGACAGCTGGCTTACGCAGTTAC
CGTTGGCCGGAACGTTCTACCCACCCCCCGGCGTGTTGATATATAGAAGAAGGGAGGGAGGTCCA
TGTATGTATATATTCCCTTCCCCGGCGTAACCATATAGAAGCCTCATAGTTGCCCTAGTTACGGT
GCATCGTGTTGGTGTTGCTGTGAGCTATTACGTATGTAGAGGAGG
Found at i:957895 original size:17 final size:17
Alignment explanation
Indices: 957873--957905 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
957863 CAGATATATG
957873 ATGTGATGTGATGTGTT
1 ATGTGATGTGATGTGTT
957890 ATGTGATGTGATGTGT
1 ATGTGATGTGATGTGT
957906 GGCAAGTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (17 bp):
ATGTGATGTGATGTGTT
Left flanking sequence: Indices 957373 -- 957872
TATGCCCACGAATGATCGATTCAGAACATTCACTCAGTATCACATGTTACAGCCGGTAGGAAACT
TGCGTAGCGATCCATCGGCACATTGGCCTTCGGAAAAAGGCTACCGAACATCGGGGGATGCACAA
CTCACTATCCGGGACCTCTCTATATAACCCCGTACTCAGGTGGGTGGAAACAAGGCACACTTATG
CCGTGTGGTGCCGCTTATGGTACGTAAAAGGTGGACCGTACGAACGCCCGTTACCCGCGGGAGGA
ACGGTCATCTATACGTCAATAAAGCCCGAGTCGATGATACGTCAATCAAGCCCGAGTAAAGCCCG
AGTCGATGGGTGGATCGGTGGATGTCGACCAGACCCCACGACACAGTTACTCGATGGAATGGCCT
GAACCAATGCCCTTCGATGATCTCGGTAACATGAACCTTTTTGTAGTAAGTGATAACTCGGAACC
ATTCGATCGAAGCAGCAGAGCAGAGCAGAGCAGAGCAGATATATG
Right flanking sequence: Indices 957906 -- 958405
GGCAAGTATCATCAACCTTCGTACTAGTCGGTACTACATAAGGTGAGATCATAAAGGAACACTCA
CGGTTTATATTGCCATTACCAGCATGTTACCCACGAAGGAAGTTTGTAACATGCGGTTCCTTCCC
GTTGCTACCATGTACCGTTACCGGACCGTCAGAGATTCCGGTGCCTGCCGCTAGCTGCATGAACT
GGATCTAGGCAGGGAACAGATATCCACGACAAATACGTTATACAACTCTACTAACACAACCCTTG
TTCGTTTCCCTCAACGCAGGCTGCCATATGATGCTTCCTTACGACAGCTGGCTTACGCAGTTACC
GTTGGCCGGAACGTTCTACCCACCCCCCGGCGTGTTGATATATAGAAGAAGGGAGGGAGGTCCAT
GTATGTATATATTCCCTTCCCCGGCGTAACCATATAGAAGCCTCATAGTTGCCCTAGTTACGGTG
CATCGTGTTGGTGTTGCTGTGAGCTATTACGTATGTAGAGGAGGG
Found at i:965038 original size:17 final size:17
Alignment explanation
Indices: 965018--965051 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
965008 CGGCCCCAGC
965018 GCAGTCGATCGCCCACT
1 GCAGTCGATCGCCCACT
965035 GCAGTCGATCGCCCACT
1 GCAGTCGATCGCCCACT
965052 ATGCAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (17 bp):
GCAGTCGATCGCCCACT
Left flanking sequence: Indices 964518 -- 965017
TAAGGTATAACTGCTGCAGTTTGCAACAGCATCCGGATGTATTCCGTTGTTTGAGTGGTAGGGGA
TGGGTTGCGGTGGATTGCCGGTTGTGTAGTGAGTGCATCCCTGGCTCCTAGCGGTGGTGTTAGAC
TAGAAAGAGCCTGTTTCCTGCTCGCCGGGGTTGAGGTGACTTTATTCCAGTATCTAAAGGCATAT
ACTGCACCCTGTGTTGGTTTGGCCGTTTCTCCGGTAGACCAGATGGCCTTGGGGGTATGGTGGGT
TCAGTATTCGTATATTAATGAGAGAGAGGAGCCACTCACCCCTCTGTTCGGCTCGCACCTGACCG
CCAGTGTCGCAGGCTCTGTGTGCGTTGCTCGTTCGCTTTCCTGGTCTGATGGGCGGATCTGCCTT
GGGAGCTTCCTTCCTTCTATTATGTATGTCTATGCTACCAAATGCCATTATCTTCTGTGCGCATC
AGCGACGGTGGCTGCCTAGGCGTGTAGATAGATTCCGGCCCCAGC
Right flanking sequence: Indices 965052 -- 965551
ATGCAATAAATGTTCGTTACCGTTACCGTACCGTACCGTACATAGTGGTGGTGGTGGTGTTGGTG
TTGGTGTTACTTCAGTAATGGCCGTGCAGTTGCCTTGGTGGCTAAGCTGGTATGACGGCTGTTGG
TTTTGGGGGGCTCTCCCCAAGAATCAGACGAGCACTATGAAGGGTTCGACTATTGGGTCCACATC
CCGGAGGCAAAGGCATTCCCTCCTCCTCTATTCCAGCCTAGCCTACTACCTGTTGATCCGGGCAA
CCCACAAGAAGGATCCTCCGCGATGTCCCTTTCTGAGGTAACACACTTATGCGCGGGCTTCGGCA
TAATGCGAGCTACCCCCCACCCCACCCCACCGCACATATAACTAACTAACCTAGGGCATCAAAGG
CTTAAGCTACACTTCAGATAAACGGCAGCGACCATGCTCTCCCTTGGCGCTGCTTCTATCTATCG
TAAGGAGATGGTTGCGGCTGGCGTTACCGCTCTCTTGACTCCTCC
Found at i:965982 original size:19 final size:19
Alignment explanation
Indices: 965958--965996 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
965948 TGCACGTTCC
965958 TGCCCATCACCCTCTAGCG
1 TGCCCATCACCCTCTAGCG
965977 TGCCCATCACCCTCTAGCG
1 TGCCCATCACCCTCTAGCG
965996 T
1 T
965997 AAGCTCCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.46, G:0.15, T:0.23
Consensus pattern (19 bp):
TGCCCATCACCCTCTAGCG
Left flanking sequence: Indices 965458 -- 965957
GATAAACGGCAGCGACCATGCTCTCCCTTGGCGCTGCTTCTATCTATCGTAAGGAGATGGTTGCG
GCTGGCGTTACCGCTCTCTTGACTCCTCCACTCACAGTCATATAGGTGGGGGTGGGCCACAGGAT
AGTTGTCAAATGGGGAGCTGCTGCGAGAGGCTCATAGTTGGGAAGGCTTTAACTCGCTGGCGCGT
TGGCCTTTTCGATAAGCTTCGGCTCACTTGGGAGTACGATATCTAGAAGAAAGACTTACGGCTGC
TTACGGTGTTTGCTGCCAACCGGAAACCTGGATTGTGGGAGACGCGCCTTCAAACAGGAATCCTT
CCGCTCCGTTAACAGCGTGTCGGGAGAATAGAGCCCGACCCAAACCAATACAAGGGCTCTCTCTA
TAGTCACCGTGGGTTGCTGTCCCAGCGGGCTCCCGCAGGCTCCTGCTCATCCGCCACTAAGTAAC
TTACCGCACGAGGTCCCGATAAAGCCCCTGGGTGGTGCACGTTCC
Right flanking sequence: Indices 965997 -- 966496
AAGCTCCCTAGGTTCATAGTGATAGAAAGCGGAACTATCTAGCGTGCTACTTGCTCTCAATAACT
CACGACTAGCCAACTGCGCACCATACCCGACTAATGACTAACTTACTCGCATCATCGCCGCCTGG
CTGGCTCGCTGTCTTATCACTGACTGGACCTTATGCCCTGGCGTTGCTGCCACCCACCCCACCCT
ATTCTATATATGAACTTCCGAGGACCTTTGTCGGCTGCCTCCTAAGTCGATGTGTGAACCTTATC
TGCCAGGCAGTTGTGGGATTGGGCCATGTTGCTTGGGGGGCGTGGGCTTCTGACCGCCTAGGCTT
CTTGTGCCTGATTCAGCACGCATTTCCTCTACGATAACTCTTGTATCCTGAAGCTGGACTTGACT
TACCGAAGCCCTGGTTATGCGGTGGGCGACGGTTATGCGGTGGGCGACGCATACTTGCGCTTCCG
ACTGACATGTGTGGTTTAATAATAATTAATAGAATCAACTATCCT
Found at i:966422 original size:18 final size:18
Alignment explanation
Indices: 966399--966435 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
966389 CCGAAGCCCT
966399 GGTTATGCGGTGGGCGAC
1 GGTTATGCGGTGGGCGAC
966417 GGTTATGCGGTGGGCGAC
1 GGTTATGCGGTGGGCGAC
966435 G
1 G
966436 CATACTTGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.51, T:0.22
Consensus pattern (18 bp):
GGTTATGCGGTGGGCGAC
Left flanking sequence: Indices 965899 -- 966398
CGCCACTAAGTAACTTACCGCACGAGGTCCCGATAAAGCCCCTGGGTGGTGCACGTTCCTGCCCA
TCACCCTCTAGCGTGCCCATCACCCTCTAGCGTAAGCTCCCTAGGTTCATAGTGATAGAAAGCGG
AACTATCTAGCGTGCTACTTGCTCTCAATAACTCACGACTAGCCAACTGCGCACCATACCCGACT
AATGACTAACTTACTCGCATCATCGCCGCCTGGCTGGCTCGCTGTCTTATCACTGACTGGACCTT
ATGCCCTGGCGTTGCTGCCACCCACCCCACCCTATTCTATATATGAACTTCCGAGGACCTTTGTC
GGCTGCCTCCTAAGTCGATGTGTGAACCTTATCTGCCAGGCAGTTGTGGGATTGGGCCATGTTGC
TTGGGGGGCGTGGGCTTCTGACCGCCTAGGCTTCTTGTGCCTGATTCAGCACGCATTTCCTCTAC
GATAACTCTTGTATCCTGAAGCTGGACTTGACTTACCGAAGCCCT
Right flanking sequence: Indices 966436 -- 966935
CATACTTGCGCTTCCGACTGACATGTGTGGTTTAATAATAATTAATAGAATCAACTATCCTGTCT
GGCATCCCATTCTGTCGACATGACCTATCGCTGGATCACAGCCCGTCCGTTACGAAGCATTTGTG
GCATGAGTGCCTCTGGTGTAATCACCCTATATACGGCGGATACGCGACTGTCCCGCCCGCAGCTT
TTCCCTGCAGGGTTCGTTGTCTTGGGGTAACCCAACCGATCCCCCGTGCTCGATATTTGACCCAA
GAGCCTGCTATATCGGTTCTGCAGCTATACACCCGCCCCTGGCCTCAGTTTCTGTAGGGCTTGGT
TGGGCTTTCGGCCCGCCAAAGCCATCCTGTATATAGGAGTAGTTTGGGTCTACAAGCCTATCAAA
GGACTGTATACTGTATATAATAGGCTGCCGTCCTCATCGCACGCATCTGTGTTCGAGTAAGGGCA
GTAACCTACCTAACCGTTTATGTCAGTTCTCCGTGAGGACCTTCC
Found at i:967583 original size:23 final size:23
Alignment explanation
Indices: 967553--967601 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
967543 GCTGACTCGT
967553 ATACGTAGGACGAACCCGAAGGC
1 ATACGTAGGACGAACCCGAAGGC
*
967576 ATACGTAGGACGACCCCGAAGGC
1 ATACGTAGGACGAACCCGAAGGC
967599 ATA
1 ATA
967602 ATACGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.27, G:0.29, T:0.10
Consensus pattern (23 bp):
ATACGTAGGACGAACCCGAAGGC
Left flanking sequence: Indices 967053 -- 967552
ACGTGCCCTGCAAAGCTGTGTCCCACGGTTATGTAGGCTACGGCCTGCCTCAGCTCTATCTGTGA
AGGGCACCAACAGGATACGCCGCCCCATCGGCTCGCGTCTTCCCTGCCGCTCTGGCAAGGTAGCG
TTTATCAATTACCTACCATCTCCCTTCACAGACCTAGCTCAGCGATCTACCTCTCTGCCACCCTC
TGTTGGGGTTGCCAGCATGACATGATAGTCTCTCGGCAGACCTGCATATGTTCTTCTTACGATCA
AGCAAACGGGACCACGACCACATAGATATAAGGATATAAGGATAAATTCATAAATGCTATCTAGG
TAATTCAGCAGAATGCAGCTGAATATTCGTTCCTTCGGAGGAAGGCTATCATAGTAGGGTAGCTT
CCTGCCTATAGCCTTCCTGTCATACCTGTAACCAATTGAGATGTGATATAACCTATCCCTGTCAA
CTAGCAGTGCTAGTCTTTGTGAGCCCAGCCTCCGCGCTGACTCGT
Right flanking sequence: Indices 967602 -- 968101
ATACGACTGGTTGGCTTTCATATACCTCTCATAAATCGCTGTACATAGGGGTGTGAATTGGTGGG
CATGTCGATGTTGAAGGAAAGCGTGTGATGGCTTTACGGTGGTGGTAGCTTTCCCCGCTCTTGGC
GGCTGTGTCAGGCTTGATACTGGTTTGTGACCTCCTCCCGGTGTTTGTAAGGCGTATACCTGTCA
ACTCTAGACGAACCGCCGACTACGTTATATATAAACGTGCGTATTGTACTTCGTTTCAGCTTGCC
TCTCGGGCTATACTGGGGGAAGTTGGGGTGAGTTGCGTCTGGCTTGATATAACGTTATACTCTCA
CCCCCAAGCTTGGCGTATACCGGGTCGTCTGGATGACGGTGTGGGTGGGCGATGCTCTCGCTCGC
GTGCAGGCAATCTTTCCACGGAGCACCAGCCTTAGGAGCTCTCCGTTATCCTGTCTACGCTTCTG
CATGCGGAAGGTGGGTTGTTACACTGATACGTCTGTTGCCAACCA
Found at i:969838 original size:6 final size:6
Alignment explanation
Indices: 969827--969854 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
969817 TGCGGTAGTT
969827 GTTGTA GTTGTA GTTGTA GTTGTA GTTG
1 GTTGTA GTTGTA GTTGTA GTTGTA GTTG
969855 CCCATCGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (6 bp):
GTTGTA
Left flanking sequence: Indices 969327 -- 969826
AACCGATGTGACAGGTATACGTTCCAACGGCTACAGCTGGAAAAAGCTCTAACATGTGGGAAGCA
CCTCTACGCTAAGTGGCGCTGGCCCTATCGAGATGCTTCGGCTTACTGGGTGGGGAGTACGTACG
CTAGGCTTGACTTTCGAATTGAATTACTACGTATATGGTTGATTCTACGAACGCCCTACCAACAA
CCTCGAACTGGTCGTGGTACATAGAGGCGACTTACTTACCTCACGTGAGGTTGCACAGTTGCAGG
TGTGCGGCTGCAACCAGAGTCCAAGCTGTCCGACTCTGTAGACATAACGAAGAGCGTACTATATA
GAAAGAAGAGGGGGTAAGCCGCATGGCGAGCGAAACCCGCCCAGCGAAGATGCTAGCTGGTTGCA
CCGCAGCCGAGACTCCGGTCCGTATCCGCTGAGTCCGGTATTGCGGCCGCGCCGCGCCGCCCGCG
CCAGCCAGCCGCCCTAGCCAGCCCTAGCCGAACTATGCGGTAGTT
Right flanking sequence: Indices 969855 -- 970354
CCCATCGGCAGCGTAAGGATCGCCCTTAGGCGTACTTGAGCTCGCACCTCAAGGTATTACACGAG
ATGGACTTACGGCTGGAGTTGGTCTCCGCCCGCCGGACACACGGATTGTCTGAGACGCGCAGGCC
ATCCCACTACCCCTACGGCAGCTCGGCAAAACGGGGGAGTAGATCCCGACCCAATATGCTGACGG
GATCTATAGGAGACTCACCTAATGAGTTTGTGCAAGCAGGCTCCCGCAGGCATCTGTTCATCAGC
CACCAAGTAACTAACCATACCTCTCTCATATACAGCGGCATCCCTGGCTCGCGTGCTGCTCTGCC
CTCTCCCTCTTGTGTATACTTGTGCGGGTTCACCGTGATAGGAAGCTGAACTATCGCTAGGGAAT
CATGCGTGCAATAACAACCGACTAGCCCACCCACCCAGTAGTGCTTTAACGTAGCTACGAGTAAC
CTACCTTTCGAAGAGTCTCCCGGGCGGGCTCGCTTCGCTTAACAG
Found at i:971266 original size:16 final size:16
Alignment explanation
Indices: 971245--971285 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
971235 GTAGGAACCC
971245 TGGACGACATAGTCCT
1 TGGACGACATAGTCCT
971261 TGGACGACATAGTCCT
1 TGGACGACATAGTCCT
971277 TGGACGACA
1 TGGACGACA
971286 GTGGCCTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (16 bp):
TGGACGACATAGTCCT
Left flanking sequence: Indices 970745 -- 971244
CAACGGCAGTTCTACCGACCCTTATTGAGACGAATGTCGCTATGTCATTGTCATCAGAATGGTTA
TGGCCTCTTATGATACTCTCACAACACGGGAAGGGGGAGTTGGTGATTCAAGTGGGCCGGGAAGT
CGGAGGGCTGAGCACATACGCTATAGCCGGCCTCGATCATGGAACATGCCGGGGTAGGGCGTACG
CAGTTACTTAACCCACTGCTGCGCCCCGCAACACACGGCAGTACTTAACACGGGTATTATCTTAT
ATACGCTATGAGCCTACTCAGTCAGAACTAGCTGATTCTCGCTCGCATTTCTGAGATCCCGAGTC
TCCAAGTGGGCCCTCTTGGCCACGCGCGACCTTGGCTTTTTGGGGAATCCTGCTCCTGTGTCGTA
GCACTATACGCTCGGCGGTCCACCGGGTTGCGGAGGTCTCGAGTTCCGAGTGTCTTCTTGGATAG
TTATAGCGGCCCATAGGCGCAAGATGTACCTTGGGGTAGGAACCC
Right flanking sequence: Indices 971286 -- 971785
GTGGCCTATATGAGGTCCAAGGTCCTTTGAATGTTCGGTGCAAGGCCACACACTTGGAACACACT
GCCCGAAACGTTCCCGTCCTTCGCTTTAGGGCCTGTCCCTCAGTGTGGTCAGTACTGTATACTGT
CGGGCAGCAAAGCTTACACCTGTTCACTGCGATGGTTCGCCAGGGCCTCTTTCCTCCTCCCTTTT
CTGCTCGCTCGTGAGGGGCTGAAACCCTTGTACGGGGGGAGAGTCGACTGAGCATCTCAGCCATT
GGCGGGAATCTCGCCCGCATCCAATCCCCAATTCTTGTTCACCCCGGATGATCTAAGGGTGAATT
GTTACCTCTATCGATCGTGTTGGGTGAGCAACAGCCGCTTCGTCACAGTACTTACTTATGGGCTA
ACAGGTCACACTTTGGCCAAGTATCCTACTCCCATACTCCCGAAAGCCAGAAAGATTAGTGGAAT
GGCCTGCAGAATGGGCGCATCATGACATCGTAAGATGTCTCGCCC
Found at i:973705 original size:19 final size:19
Alignment explanation
Indices: 973681--973718 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
973671 ACCCAATCGT
973681 GGGTTCATGTGGGGCTCGC
1 GGGTTCATGTGGGGCTCGC
973700 GGGTTCATGTGGGGCTCGC
1 GGGTTCATGTGGGGCTCGC
973719 ATGTGCGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.05, C:0.21, G:0.47, T:0.26
Consensus pattern (19 bp):
GGGTTCATGTGGGGCTCGC
Left flanking sequence: Indices 973181 -- 973680
TACGGAGCGGCCTCTTTATCACTCGAACCCCGTCGTACATACGCCCCCCCGCGGTGGGTGGGGTT
GGGGTTAGATGCGGGTTCTGTAGGGCTCGAAACATGATGTTGGACAGCGGGGCCCGGGCCGGCGC
GTGGCGTGGTGATTGAATCTGCTCCTTACGCAAGATAAACCCCTGCTACTGCCCATATGTATCCC
TTGTGCCGTTATGTGCTCCAGCCGCCCACATACAACTAAAAGCACTACAACAACCCGCTCCGTCT
CACAACGCCAGCACACACAACTAACTCCAACTAGAACACCAGTGGGTCTTTCAGTGACATTGTGG
AATGGCCCGGTTTTGTTACTGACTGAACTGAGCCTTCTATCGTCACTATCGGAGAAATAACAGTA
TATGCATACGCTATGACGTACTGAGGGTTCTGCTGGAACACAACAACTACAGGGGAGGGGACTCC
CTTGGGGACAGGGGTTGGTGGGTTGAAACGGGCCCACCCAATCGT
Right flanking sequence: Indices 973719 -- 974218
ATGTGCGGCTGCCCAAGTCCTCCTTTCGCGATGCGCCGGAGCAGTGTTTACATAAGTGACGCGGG
GGTGGGTTACGTAGAGGGTCACACACAAGGGTTTCAAGGTAGGCTAGGCCCACACACACACTTCT
TATGTAGGCTCAGCGTCGCGGGGGAACCAACAACGCCACCCCGCATACCCCCCGTACTTACGTGG
GCTCTCTCTACAACGAGCAGCGAGCGAAGCTCCAACGAGCAGCGGCCGAGGCAGAACACAACAAC
AACGTAGTGCCGGGGGGGAAGAAGTGGAAACGGCAGGGGTTGGTGGGTTGTGCGCGGCCCCGAAG
GGGTACGAAGGGCAGCCTCCCGAGCTCAACCTCAAGCCTTACCCGCTCTGCCTCTCTATATAACC
CCGTCAGACGCGGAGCAGAAACACCTTGTAACGTACTGAGAACACTGAGGACGGCAGGGGAACTC
CGTATTGGGACGGCCTCTCGGGCCGGCAGGGAACCGAAGGGCAAC
Found at i:975082 original size:24 final size:24
Alignment explanation
Indices: 975054--975102 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
975044 AATACCCCCC
975054 TGGGTATGCGGGTGGGTTATGTAG
1 TGGGTATGCGGGTGGGTTATGTAG
975078 TGGGTATGCGGGTGGGTTATGTAG
1 TGGGTATGCGGGTGGGTTATGTAG
975102 T
1 T
975103 ATGAACGGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.04, G:0.49, T:0.35
Consensus pattern (24 bp):
TGGGTATGCGGGTGGGTTATGTAG
Left flanking sequence: Indices 974554 -- 975053
GCTCCAACTCGAGTTACACGGTCGTTAGGAACACCAATGCTCACCCATTCCCCACTTTCAGCCAC
CCGCACAACGCCCCCCTGCATACCCCCTCCGATGCGTCGTCGTGTGTCCAAGCACGTCACGACAT
CTGTCGTTGCGTTGATGTGCTTCGTCGTTCTTACGTACTACCCTTGTTGTGAGGTCCCTTGCGGC
GGAACGGCTCAACGTGTCGTGTGTGTATATAGCAAGGCAAGGCAAGGCAAGCAAGCATGTGCGGT
GAGACACATCCGTTATGGTTGGTCGTACCAGACCGAACCGCAGTTAACTACCCCCCCGTACAACG
CCTCGGGGTACCCCCGGGGATACGGCCAAGGTAAAATGCAAGGCTCTGCTGCCGTACGTGCTGGT
TGGTCTGGTGGTCTGTCAATCCACGCCGGAATGGTGTTGGGCCTAAGCCCCACCTTCCCTGGAAA
CGGTGTAAACGTACGCCGGCTCTATGCAACCGTACAATACCCCCC
Right flanking sequence: Indices 975103 -- 975602
ATGAACGGGGTATCCCCCTGTAGCCGGCAGGCATAACCGTGATTGAACGGTGTCTCTATTTAACC
CCCCAGCGTACGGTAGGCTCTGCCTCTGTGAACCGCCCCGTACATGGCGGGTGTGGGGGAAGGAA
GTAAGAAGGTGCCGGCGATTGCCTACCTACCGCAGTACGTAAGGCCGCCCGGAAGATAGATGATT
GTTGCTGGTGTTACGGGCCGCTTTGACCACGACTATCAAAGACCACTTCACAGATCCATATGCGG
TAGTCCCGTTAGTCCCTCTAGTCTATGAAGCGCTCACCGCACCTACACTGCCCCGGCCTCCTGAT
CTCCAACTCTCCCTCAACAGAGAACTGATCCCTCCGTTCGGCCCTTTGGAAATCGACCTGTCGGA
AGTGACGGACCCAAGCCAATAATTCTAGAACAATAGTACCAGCTTATACGGAACCTTACCCCACA
TACTGAACTAGATATTTCGTAATAACAAGCCGTTACCCCGCCCGC
Found at i:978818 original size:21 final size:21
Alignment explanation
Indices: 978789--978829 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
978779 AAGGCACGCC
*
978789 CACCACCACCTCACCTCACCT
1 CACCACCACCGCACCTCACCT
*
978810 CACCGCCACCGCACCTCACC
1 CACCACCACCGCACCTCACC
978830 GCCACCTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.63, G:0.05, T:0.10
Consensus pattern (21 bp):
CACCACCACCGCACCTCACCT
Left flanking sequence: Indices 978289 -- 978788
CTGCCCGGTCCAACTGTGGGCAGCCGTATATAGCAAGCAGCCGGTGTATGTCGTCTTAGAAAAGC
ATTCTAGAGTTTACCAGCTTTGATAAACTGACGGTATGTGCGGACAACCACAACAATGTCAGTGC
AGCACAACACGCTCGATATATCTTCTTATATGGTAGGATAGCAGTTTTCACCCTTTCCCCCACAG
TTCGCTCTTTCACTACATATCACCTCCTGGTAGGTACAACGGTTTTGTTAGAAACACATCGTTGG
GTGGGCAGTTCCGATGAGAGAGGTCAGTTACCCACCCCTTGCAATTGAAGAAGAACAAATGACCA
CACGATGTATACGCCTCGATCGCATCTCATATAGGTGAGGCAAGCCAGCTATGAATCGTGAACCA
GCTCGCTCTAAGTACCAGTTGTGTTGTATCCTACGCGTATTGAGTATTGAGCGGGGATCTTATGT
TACCAAGTCGACCCGTACAACAGACCTTGCTATTCAAGGCACGCC
Right flanking sequence: Indices 978830 -- 978846
GCCACCTCATCAACATA
Found at i:978819 original size:16 final size:16
Alignment explanation
Indices: 978800--978838 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
978790 ACCACCACCT
978800 CACCTCACCTCACCGC
1 CACCTCACCTCACCGC
*
978816 CACCGCACCTCACCGC
1 CACCTCACCTCACCGC
978832 CACCTCA
1 CACCTCA
978839 TCAACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.21, C:0.62, G:0.08, T:0.10
Consensus pattern (16 bp):
CACCTCACCTCACCGC
Left flanking sequence: Indices 978300 -- 978799
AACTGTGGGCAGCCGTATATAGCAAGCAGCCGGTGTATGTCGTCTTAGAAAAGCATTCTAGAGTT
TACCAGCTTTGATAAACTGACGGTATGTGCGGACAACCACAACAATGTCAGTGCAGCACAACACG
CTCGATATATCTTCTTATATGGTAGGATAGCAGTTTTCACCCTTTCCCCCACAGTTCGCTCTTTC
ACTACATATCACCTCCTGGTAGGTACAACGGTTTTGTTAGAAACACATCGTTGGGTGGGCAGTTC
CGATGAGAGAGGTCAGTTACCCACCCCTTGCAATTGAAGAAGAACAAATGACCACACGATGTATA
CGCCTCGATCGCATCTCATATAGGTGAGGCAAGCCAGCTATGAATCGTGAACCAGCTCGCTCTAA
GTACCAGTTGTGTTGTATCCTACGCGTATTGAGTATTGAGCGGGGATCTTATGTTACCAAGTCGA
CCCGTACAACAGACCTTGCTATTCAAGGCACGCCCACCACCACCT
Right flanking sequence: Indices 978839 -- 978846
TCAACATA
Done.