Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029130
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 978846
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
File 4 of 5
Found at i:674330 original size:24 final size:24
Alignment explanation
Indices: 674296--674364 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
674286 GCGCCGGACT
*
674296 GCCCGCGTACGTGACGGCTGTCCC
1 GCCCGCATACGTGACGGCTGTCCC
* * *
674320 GCCCGCATACGTAACGACTGTCCT
1 GCCCGCATACGTGACGGCTGTCCC
*
674344 GCACGCATACGTGACGGCTGT
1 GCCCGCATACGTGACGGCTGT
674365 GTGAGCGGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.19
Consensus pattern (24 bp):
GCCCGCATACGTGACGGCTGTCCC
Left flanking sequence: Indices 673796 -- 674295
TGTGGGCAGCTGGCAGGAGTCTACGGAGTCGGTGAGCGATTGGGTTGTACGGCTGTCGGTTCTAG
TAGCGTCAGTAGGGCAGGAGGGTACAGGATCAGTAGCGGGGGAGCGTGTTGGTTCGGTATCGGGT
GAACCGGTCAACGCCCCACAACCAGCGACCACAACTACCACCCACCCGTCGCGTTACGTAACGTC
CCACGGGCAGTGAAGGGGTCGAGGCCGCAGTTACGGGTTCACCGGTTCCATAAAACAACCCCTCA
TATGGCGGGGCAGGGGAAGCGACTCCGTAGACTGTACTTTATCCGGCTCCTCCGGCTGTAGCCAC
TCCGTTACCGAACCGGCAGAGTGAGCAACTATGGCGCGTTCCGCCTGCCTAGCAGTTTACCATGT
ACACAAACACTGAAGGGCTTGGAGCAGCTACTGTGCACCGATACGTTACACCTGGAACACTAACA
CAAGCTACACCCCGCACAGAGAACCATCAACCAGTGCGCCGGACT
Right flanking sequence: Indices 674365 -- 674864
GTGAGCGGCTATAGACCCCTGCCTTATAGAGTGAGCAGCCTGCCCCACATAGCAACTAGTTCTCC
CTGCCCCACACCACATAATAACAGCCAGCTACAGTGGCCAGGGAAATAAACCAGTAATCTTTCCC
TATGTAGCGGGGCAGTTGGTTTGTGTACGCGTAAGGCAGGGAAGGGGACGCAGAGTAACCGTGTA
GGGGTTCTAATAGAACACAGTCTTCTTCTTTCTTTCCTTGAAGTAGTTAGTTATATGTGCGGTGG
GGTGGGGTGGGGCTTTCCTTTCTATGTGGCGTGGCGTGGCTGGCTGGCTGCTGCAGTTGTCGGTT
CGCTGGTTGGTGGGCCGCTCACAGTATCGGACAGGTATGCAGAGGAAGGCAGTCTAAAAGCTTCG
CTCACGGGAGTCGGTTCGTCGGCAGTTGTAACACCCACACCAGTTGCGTAAGGCAGTTACGGGGC
AGCGAGGACACGGTCGGAGCCGACATCAGCTTCGCTCACACAGAA
Found at i:682105 original size:26 final size:25
Alignment explanation
Indices: 682035--682106 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 25
682025 GTTCGCTGTA
*
682035 TGGGGAACCATCCAACAACGAC--G
1 TGGGGAACCATCCAATAACGACGGG
* **
682058 -GGGGAACCATCCCACT-TTGACGGG
1 TGGGGAACCAT-CCAATAACGACGGG
682082 CTGGGGAACCATCCAATAACGACGG
1 -TGGGGAACCATCCAATAACGACGG
682107 ATATACATAC
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
24 1 0.03
25 4 0.11
26 15 0.42
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.12
Consensus pattern (25 bp):
TGGGGAACCATCCAATAACGACGGG
Left flanking sequence: Indices 681535 -- 682034
GGAAGTTTCCATCCCCGGCACCGGCTACAACGAGTTGATATTTGTCCCGCTAATACACGACGGGG
AGCCTCCCGCACCTGTGTGGCTCTCAATGGTGGTTGATGTGGCTCTAGTGTACGGTGGTTGATGT
AGCTGCCCACATAGCAACTAGTTCCGACTCCCTGCAGTACGGCCCCACATACGAAGCGAACTCGA
CCGGCCCATATACATTCATATTACGTTGACAGGCTCCGATCGACAGGCTCCGACGCCACCGCCGT
AACGGGCAGTAAAGTATTCATCGACCTCACCTGCCTCGCCACATAACTGGAACTATGAGCTGGAA
CACGCAGCGAAGCGTGCACGTATCGGGGAGGGGCGAGTTAGTTAGTTATAAATGAGGAGGCTTCC
CCTGTATCCGGTGGGCGTGTGACGTACCTCCCGGCATATGTATTATTACACTCTAGTTTCCTGTA
ACCTGAGCTGGCTGTTAGTACTGAGGCAGTTGTCGGTTCGCTGTA
Right flanking sequence: Indices 682107 -- 682606
ATATACATACCACCCACCCCCCAATCGGAAGTGAGTTTCATTTGTATTAATCCCCTGCCCTGCCC
TACATAGTTGAACTGGCCGCATACGTGCGGGTTGGTTTATGTGGCTTTTCAGGCCGCCATATATA
TAACGAACGCTGGCTCCCCTGCAGAAGTCGTGGGACCGGCAGCACCGGACAATATATGGAACCCA
CAAACCCACCCTGTTCGCCTGGCCGTGCAAGCTTAGGGAACTCGTAGCAGTCGGAGGGTAATGCC
TGTTCGCTCACTCTGCTGTTACGGGGAAAGCCGAGGATGGTGATCGAAGTTAGCGAAGCCTCCCT
GCAGGTCTACCATCTACCACTATAACCGTGTTACGTAGGCAGCTACACTCCTACGTATTAGTTTC
TACACTCCTACGTAACATGGCTATAGTGTACGACGGGGACGCATATGAGCAGTCGTGGAAACACC
CGCACGCACCTTCGTTACAGGAAGTCAAGGGCAGTTGGTTTGTGT
Found at i:684027 original size:22 final size:22
Alignment explanation
Indices: 683999--684041 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
683989 TAACAAGCGA
683999 ACCGACTCCGCTACAGGCGTAT
1 ACCGACTCCGCTACAGGCGTAT
684021 ACCGACTCCGCTACAGGCGTA
1 ACCGACTCCGCTACAGGCGTA
684042 CCCCACCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.37, G:0.23, T:0.16
Consensus pattern (22 bp):
ACCGACTCCGCTACAGGCGTAT
Left flanking sequence: Indices 683499 -- 683998
AGCCTTCCGCTTTCAGGCTACTGGGTTACACGAACCCCTATAGCCGCCGGAGGGGAATATGGAAG
GGCTAAGCAGGTACGACGGAAGCCACAACGTATAATGGCTCCTTCCTACACAACTACACTAGTTT
CCCCGGCTACTGCGGTTATATAGAGAGGTGAGCAACTAGTTCCCTGCATCTGCCGTACACCTTAT
GACGTAATCGCCCTGTCCCTGCTCTTCAAATAAAAAGATGAATGTTTCTGTGTGAGCCAGTTACG
GGCCCGAACCAACACGCTGTCCCCTGCCCTGCCGCCCCACACTCACTCATATGTAACACTACCCG
GTTCGCCACGTGATGTCTAGCATTATGACGTCTGGTGTATGCGCGAGTAAGCAACTAGTTCTCCG
TATCTGCCTTCATAACGCTTCCACGCTACCGTAGTGCCACACCTGGTACTATAGCAATATGACTT
TCCCCTACACTGCCGTTACGTAGCGGCCAGTCCCCTAACAAGCGA
Right flanking sequence: Indices 684042 -- 684541
CCCCACCATGTTACCTCGTCGTAACGTTACCGACCCCGAACCTGTAGCCAGAACCACGACCCCGA
ACCCGCCACATAACGCTGTCCCCTTTCCATATAGTGAGCGTATATGTAACCGATACTGCCAACCC
TCGCTATACGACACCCACCTGAACCTGTATCGGCTATACGCCCACCTTCACCGAACCCACGTGCG
GGCCGTTAAGTTGTGGGAGTTGTGGGGACGTTCACCTATCCTCGCTAGCCCACTCAGTAAACGCG
TTGGCTCCTGTAACCCCTGCCGCTTCCCTGCTTACGCCAGAACCACGACCCCGAACCCCCCATTG
ACTACGTGAGCAACTAGTTCTGCCTGCCTCACATACTATGTGGCCTCCCTGCCTCCCACATAGCA
CTCCCTGCCCCGCCACCTCGCCTCGCTGGTTGTTGAGTTCGCCAAGCTCACCGCATCCCTCCGAC
AACTGTGGCCTCCGACAACCAACACTCCGGCATATGGACTAGCCG
Found at i:684827 original size:6 final size:6
Alignment explanation
Indices: 684816--684868 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
684806 ACAACAACCA
* *
684816 ACAACT ACAACT ACAACT ACAACGT A-AACT ACTACGT A-AACT ACAACC
1 ACAACT ACAACT ACAACT ACAAC-T ACAACT ACAAC-T ACAACT ACAACT
684864 ACAAC
1 ACAAC
684869 CACGACTACC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 4 0.10
6 32 0.80
7 4 0.10
ACGTcount: A:0.49, C:0.32, G:0.04, T:0.15
Consensus pattern (6 bp):
ACAACT
Left flanking sequence: Indices 684316 -- 684815
CCCTGCCGCTTCCCTGCTTACGCCAGAACCACGACCCCGAACCCCCCATTGACTACGTGAGCAAC
TAGTTCTGCCTGCCTCACATACTATGTGGCCTCCCTGCCTCCCACATAGCACTCCCTGCCCCGCC
ACCTCGCCTCGCTGGTTGTTGAGTTCGCCAAGCTCACCGCATCCCTCCGACAACTGTGGCCTCCG
ACAACCAACACTCCGGCATATGGACTAGCCGCCCCATGTAGCGTCTGACCGGGAGGCGACTCACC
TGTATGAATGCAGCGTATAGCTACAGGTCGCTGGCTTGGCTGCTGGAGGTGTTGTGTTTGAACCA
GCCCGCATACCGTGTTGGTTCGGGGTTATATATGGTACTACAGGGGCACATACACCAGCATGGGT
CCTGGCAGCGTATATGAACCATGTACGTATATCAGGAGCCAACTTCCCTCTATACACCCCCACCC
AGTATGTGTTTACCCTGCCCGATACGTGCACGCGAACAACAACCA
Right flanking sequence: Indices 684869 -- 685368
CACGACTACCGTTTATGTGCCGTACGGTGGCCGCTCGCTGCGTGGGGTGGCATGGCTTAGGGCGG
GCGGGCGGCCCCCGCATCAACATCTTGTTTTCATCACTGATAGACGCGGGTTTGTTTGGGGTGTC
TATACGGCGTGGGGAAATACCGTTCACCAGGTCCTCGCGTTACACCGGAATCAGAATCTGGTGGG
TACTATACACGCCACCGAACTCCAACTGGGCCACACACATAATAGCGCTGTGTCTTCCCTGCCCG
CATACCCCACTTAGACGGGAGGTTATGGAGTACTAGTTGGCTTGGCTTCTTCAGCGGCTAGTTGA
GTAACTTGATAAAGAGAAAGATGCCTCTATAGATGCCATTGATAAAGATGCCGATGATTCTGGGT
TATTGAGGTGGGGGATGCCTATACACCGACCCTGCGTCACATAGCCCACGACTAAGCCCACCCAG
TTCCAGAAGTGGAAAGCGTAGAAGCTCACGTAACGGCAGGTCGGA
Found at i:684833 original size:12 final size:13
Alignment explanation
Indices: 684816--684862 Score: 64
Period size: 12 Copynumber: 3.8 Consensus size: 13
684806 ACAACAACCA
684816 ACAACTACAAC-T
1 ACAACTACAACGT
684828 ACAACTACAACGT
1 ACAACTACAACGT
*
684841 A-AACTACTACGT
1 ACAACTACAACGT
684853 A-AACTACAAC
1 ACAACTACAAC
684863 CACAACCACG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
12 30 0.94
13 2 0.06
ACGTcount: A:0.49, C:0.30, G:0.04, T:0.17
Consensus pattern (13 bp):
ACAACTACAACGT
Left flanking sequence: Indices 684316 -- 684815
CCCTGCCGCTTCCCTGCTTACGCCAGAACCACGACCCCGAACCCCCCATTGACTACGTGAGCAAC
TAGTTCTGCCTGCCTCACATACTATGTGGCCTCCCTGCCTCCCACATAGCACTCCCTGCCCCGCC
ACCTCGCCTCGCTGGTTGTTGAGTTCGCCAAGCTCACCGCATCCCTCCGACAACTGTGGCCTCCG
ACAACCAACACTCCGGCATATGGACTAGCCGCCCCATGTAGCGTCTGACCGGGAGGCGACTCACC
TGTATGAATGCAGCGTATAGCTACAGGTCGCTGGCTTGGCTGCTGGAGGTGTTGTGTTTGAACCA
GCCCGCATACCGTGTTGGTTCGGGGTTATATATGGTACTACAGGGGCACATACACCAGCATGGGT
CCTGGCAGCGTATATGAACCATGTACGTATATCAGGAGCCAACTTCCCTCTATACACCCCCACCC
AGTATGTGTTTACCCTGCCCGATACGTGCACGCGAACAACAACCA
Right flanking sequence: Indices 684863 -- 685362
CACAACCACGACTACCGTTTATGTGCCGTACGGTGGCCGCTCGCTGCGTGGGGTGGCATGGCTTA
GGGCGGGCGGGCGGCCCCCGCATCAACATCTTGTTTTCATCACTGATAGACGCGGGTTTGTTTGG
GGTGTCTATACGGCGTGGGGAAATACCGTTCACCAGGTCCTCGCGTTACACCGGAATCAGAATCT
GGTGGGTACTATACACGCCACCGAACTCCAACTGGGCCACACACATAATAGCGCTGTGTCTTCCC
TGCCCGCATACCCCACTTAGACGGGAGGTTATGGAGTACTAGTTGGCTTGGCTTCTTCAGCGGCT
AGTTGAGTAACTTGATAAAGAGAAAGATGCCTCTATAGATGCCATTGATAAAGATGCCGATGATT
CTGGGTTATTGAGGTGGGGGATGCCTATACACCGACCCTGCGTCACATAGCCCACGACTAAGCCC
ACCCAGTTCCAGAAGTGGAAAGCGTAGAAGCTCACGTAACGGCAG
Found at i:691929 original size:16 final size:16
Alignment explanation
Indices: 691908--691941 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
691898 CGTACCGTTG
691908 ACGCAGGTGTAGCACC
1 ACGCAGGTGTAGCACC
691924 ACGCAGGTGTAGCACC
1 ACGCAGGTGTAGCACC
691940 AC
1 AC
691942 TAGTCTGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.32, G:0.29, T:0.12
Consensus pattern (16 bp):
ACGCAGGTGTAGCACC
Left flanking sequence: Indices 691408 -- 691907
GTTGGCGCAGCGTTATAAGCGATTCCCGGTACAACAACTATATTGAAACGTGAGGACTACTACTT
ATATATGACTGACGTGGGGCCCTAACAGCAAGAAACAAGAATGCACCTAGGTCGCTTATTTCCGT
ATATAGTGATTAACGTAATATGAAGAATTGGATTCCCTATCGAATGCAGCCCATGCGCGGGCACC
TATACCCCGTTTACTCGCCAGAGGGAATGCCTCTAATCGAGGTAGCTGTTGCACTACTTACATAG
CTATAGCTCTCTCTTTAGCTGGTTGGGATAGTAGAGAGAACCTGATAGGCTGCGTGCGTGCGTGC
GTTGAGTGTTGTTAAGTAGTTTGACGCACGGTGGGGTGGGGTGGTGGTGGTTGATCCACCAGAAC
AAGCAGCGGAGAATACCGTGGTATGTACGTAGAGAAAGAGAAAGGCCGCAACCGCCACCGTATGG
GTATGGTATGGTATGGTATGAACACGGCTTTTAACCGTACCGTTG
Right flanking sequence: Indices 691942 -- 692441
TAGTCTGTCCACTACCCACTAGTCTGTCCACTACAACACAACGCGCGACGCGAGGAGCTACCCAA
GGCACATCACAGACCGCGCACGTATGCAACACTTCCGTTGACCGCGCACGTATGCAACACTTCCG
TTTGTCCGCAACGACCGCACATTTCCAAATGCATTTGTGCGGTTGTCGATGCAGTTCGGGAGGGA
ATACTACATGAGCTAGGCAGATCTATTGGATGGCTAGGATACAATAGGCCTTTTCACGCCCCCAA
CGTGGTGTTATGGTCCAAGGTCGAAAACGATGGGTTGGGTGGTTACCATACCGGAAAGTGACACC
AACGATCCTATCGGCAACAGTCACGTCTCACTCATCACGTCTCACTCGTTTATCACGTCTCACTC
GTTTATATTATATATATGGTAGGCTCGTTAGAACACTCAGGAAGGACCCCTTACCAGTCCGGTGG
GAAGCAATGAGCTGGCAGAAAAACACAGACCGAAACACCCGACGT
Found at i:691962 original size:19 final size:19
Alignment explanation
Indices: 691938--691975 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
691928 AGGTGTAGCA
691938 CCACTAGTCTGTCCACTAC
1 CCACTAGTCTGTCCACTAC
691957 CCACTAGTCTGTCCACTAC
1 CCACTAGTCTGTCCACTAC
691976 AACACAACGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.42, G:0.11, T:0.26
Consensus pattern (19 bp):
CCACTAGTCTGTCCACTAC
Left flanking sequence: Indices 691438 -- 691937
ACAACAACTATATTGAAACGTGAGGACTACTACTTATATATGACTGACGTGGGGCCCTAACAGCA
AGAAACAAGAATGCACCTAGGTCGCTTATTTCCGTATATAGTGATTAACGTAATATGAAGAATTG
GATTCCCTATCGAATGCAGCCCATGCGCGGGCACCTATACCCCGTTTACTCGCCAGAGGGAATGC
CTCTAATCGAGGTAGCTGTTGCACTACTTACATAGCTATAGCTCTCTCTTTAGCTGGTTGGGATA
GTAGAGAGAACCTGATAGGCTGCGTGCGTGCGTGCGTTGAGTGTTGTTAAGTAGTTTGACGCACG
GTGGGGTGGGGTGGTGGTGGTTGATCCACCAGAACAAGCAGCGGAGAATACCGTGGTATGTACGT
AGAGAAAGAGAAAGGCCGCAACCGCCACCGTATGGGTATGGTATGGTATGGTATGAACACGGCTT
TTAACCGTACCGTTGACGCAGGTGTAGCACCACGCAGGTGTAGCA
Right flanking sequence: Indices 691976 -- 692475
AACACAACGCGCGACGCGAGGAGCTACCCAAGGCACATCACAGACCGCGCACGTATGCAACACTT
CCGTTGACCGCGCACGTATGCAACACTTCCGTTTGTCCGCAACGACCGCACATTTCCAAATGCAT
TTGTGCGGTTGTCGATGCAGTTCGGGAGGGAATACTACATGAGCTAGGCAGATCTATTGGATGGC
TAGGATACAATAGGCCTTTTCACGCCCCCAACGTGGTGTTATGGTCCAAGGTCGAAAACGATGGG
TTGGGTGGTTACCATACCGGAAAGTGACACCAACGATCCTATCGGCAACAGTCACGTCTCACTCA
TCACGTCTCACTCGTTTATCACGTCTCACTCGTTTATATTATATATATGGTAGGCTCGTTAGAAC
ACTCAGGAAGGACCCCTTACCAGTCCGGTGGGAAGCAATGAGCTGGCAGAAAAACACAGACCGAA
ACACCCGACGTACTGAAGGTTTCTGTAACAGTGGAGATTCGCCAC
Found at i:692058 original size:28 final size:28
Alignment explanation
Indices: 692018--692073 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
692008 GCACATCACA
692018 GACCGCGCACGTATGCAACACTTCCGTT
1 GACCGCGCACGTATGCAACACTTCCGTT
692046 GACCGCGCACGTATGCAACACTTCCGTT
1 GACCGCGCACGTATGCAACACTTCCGTT
692074 TGTCCGCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (28 bp):
GACCGCGCACGTATGCAACACTTCCGTT
Left flanking sequence: Indices 691518 -- 692017
CCTAGGTCGCTTATTTCCGTATATAGTGATTAACGTAATATGAAGAATTGGATTCCCTATCGAAT
GCAGCCCATGCGCGGGCACCTATACCCCGTTTACTCGCCAGAGGGAATGCCTCTAATCGAGGTAG
CTGTTGCACTACTTACATAGCTATAGCTCTCTCTTTAGCTGGTTGGGATAGTAGAGAGAACCTGA
TAGGCTGCGTGCGTGCGTGCGTTGAGTGTTGTTAAGTAGTTTGACGCACGGTGGGGTGGGGTGGT
GGTGGTTGATCCACCAGAACAAGCAGCGGAGAATACCGTGGTATGTACGTAGAGAAAGAGAAAGG
CCGCAACCGCCACCGTATGGGTATGGTATGGTATGGTATGAACACGGCTTTTAACCGTACCGTTG
ACGCAGGTGTAGCACCACGCAGGTGTAGCACCACTAGTCTGTCCACTACCCACTAGTCTGTCCAC
TACAACACAACGCGCGACGCGAGGAGCTACCCAAGGCACATCACA
Right flanking sequence: Indices 692074 -- 692573
TGTCCGCAACGACCGCACATTTCCAAATGCATTTGTGCGGTTGTCGATGCAGTTCGGGAGGGAAT
ACTACATGAGCTAGGCAGATCTATTGGATGGCTAGGATACAATAGGCCTTTTCACGCCCCCAACG
TGGTGTTATGGTCCAAGGTCGAAAACGATGGGTTGGGTGGTTACCATACCGGAAAGTGACACCAA
CGATCCTATCGGCAACAGTCACGTCTCACTCATCACGTCTCACTCGTTTATCACGTCTCACTCGT
TTATATTATATATATGGTAGGCTCGTTAGAACACTCAGGAAGGACCCCTTACCAGTCCGGTGGGA
AGCAATGAGCTGGCAGAAAAACACAGACCGAAACACCCGACGTACTGAAGGTTTCTGTAACAGTG
GAGATTCGCCACTACATCTGGGTAGGCGGGGATTCAACCAGGTCAGCTCAGGATAGTAGGAGTCG
ATCCTATCCCGGAGACTGCTAGGTGCTATAGACACTTCGTATCCA
Found at i:692306 original size:14 final size:14
Alignment explanation
Indices: 692287--692313 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
692277 TCGGCAACAG
692287 TCACGTCTCACTCA
1 TCACGTCTCACTCA
692301 TCACGTCTCACTC
1 TCACGTCTCACTC
692314 GTTTATCACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.44, G:0.07, T:0.30
Consensus pattern (14 bp):
TCACGTCTCACTCA
Left flanking sequence: Indices 691787 -- 692286
TCCACCAGAACAAGCAGCGGAGAATACCGTGGTATGTACGTAGAGAAAGAGAAAGGCCGCAACCG
CCACCGTATGGGTATGGTATGGTATGGTATGAACACGGCTTTTAACCGTACCGTTGACGCAGGTG
TAGCACCACGCAGGTGTAGCACCACTAGTCTGTCCACTACCCACTAGTCTGTCCACTACAACACA
ACGCGCGACGCGAGGAGCTACCCAAGGCACATCACAGACCGCGCACGTATGCAACACTTCCGTTG
ACCGCGCACGTATGCAACACTTCCGTTTGTCCGCAACGACCGCACATTTCCAAATGCATTTGTGC
GGTTGTCGATGCAGTTCGGGAGGGAATACTACATGAGCTAGGCAGATCTATTGGATGGCTAGGAT
ACAATAGGCCTTTTCACGCCCCCAACGTGGTGTTATGGTCCAAGGTCGAAAACGATGGGTTGGGT
GGTTACCATACCGGAAAGTGACACCAACGATCCTATCGGCAACAG
Right flanking sequence: Indices 692314 -- 692813
GTTTATCACGTCTCACTCGTTTATATTATATATATGGTAGGCTCGTTAGAACACTCAGGAAGGAC
CCCTTACCAGTCCGGTGGGAAGCAATGAGCTGGCAGAAAAACACAGACCGAAACACCCGACGTAC
TGAAGGTTTCTGTAACAGTGGAGATTCGCCACTACATCTGGGTAGGCGGGGATTCAACCAGGTCA
GCTCAGGATAGTAGGAGTCGATCCTATCCCGGAGACTGCTAGGTGCTATAGACACTTCGTATCCA
TAAGCATTCCACGGTTTACCTAGAAGCAGTCCACTAGGCGCAGCACCCGAACAAGCTGTGGCGGA
TGCGGTTCGCAAAGCCTATGTAGCCGTTTGTTCCGGGCTCGTGAACTTGACGTGCCAGGGGTTAC
AGTACCGGGGTTGGCTCAGAGGGAAGGGGAAAAACCCCCTCCGGTATCAGGACGTGAGCCAGTGA
TGTCTACGCCGGAGTCAGATTTCAGTGTAGGGGTTCGCGTCGTTA
Found at i:692323 original size:18 final size:18
Alignment explanation
Indices: 692300--692337 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
692290 CGTCTCACTC
692300 ATCACGTCTCACTCGTTT
1 ATCACGTCTCACTCGTTT
692318 ATCACGTCTCACTCGTTT
1 ATCACGTCTCACTCGTTT
692336 AT
1 AT
692338 ATTATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.32, G:0.11, T:0.39
Consensus pattern (18 bp):
ATCACGTCTCACTCGTTT
Left flanking sequence: Indices 691800 -- 692299
GCAGCGGAGAATACCGTGGTATGTACGTAGAGAAAGAGAAAGGCCGCAACCGCCACCGTATGGGT
ATGGTATGGTATGGTATGAACACGGCTTTTAACCGTACCGTTGACGCAGGTGTAGCACCACGCAG
GTGTAGCACCACTAGTCTGTCCACTACCCACTAGTCTGTCCACTACAACACAACGCGCGACGCGA
GGAGCTACCCAAGGCACATCACAGACCGCGCACGTATGCAACACTTCCGTTGACCGCGCACGTAT
GCAACACTTCCGTTTGTCCGCAACGACCGCACATTTCCAAATGCATTTGTGCGGTTGTCGATGCA
GTTCGGGAGGGAATACTACATGAGCTAGGCAGATCTATTGGATGGCTAGGATACAATAGGCCTTT
TCACGCCCCCAACGTGGTGTTATGGTCCAAGGTCGAAAACGATGGGTTGGGTGGTTACCATACCG
GAAAGTGACACCAACGATCCTATCGGCAACAGTCACGTCTCACTC
Right flanking sequence: Indices 692338 -- 692837
ATTATATATATGGTAGGCTCGTTAGAACACTCAGGAAGGACCCCTTACCAGTCCGGTGGGAAGCA
ATGAGCTGGCAGAAAAACACAGACCGAAACACCCGACGTACTGAAGGTTTCTGTAACAGTGGAGA
TTCGCCACTACATCTGGGTAGGCGGGGATTCAACCAGGTCAGCTCAGGATAGTAGGAGTCGATCC
TATCCCGGAGACTGCTAGGTGCTATAGACACTTCGTATCCATAAGCATTCCACGGTTTACCTAGA
AGCAGTCCACTAGGCGCAGCACCCGAACAAGCTGTGGCGGATGCGGTTCGCAAAGCCTATGTAGC
CGTTTGTTCCGGGCTCGTGAACTTGACGTGCCAGGGGTTACAGTACCGGGGTTGGCTCAGAGGGA
AGGGGAAAAACCCCCTCCGGTATCAGGACGTGAGCCAGTGATGTCTACGCCGGAGTCAGATTTCA
GTGTAGGGGTTCGCGTCGTTAATACTGGCTACATGACCTGCCCTG
Found at i:692996 original size:4 final size:4
Alignment explanation
Indices: 692987--693018 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
692977 TCTAGAACCG
692987 GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA
1 GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA
693019 TGTGGGGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTTA
Left flanking sequence: Indices 692487 -- 692986
AGGCGGGGATTCAACCAGGTCAGCTCAGGATAGTAGGAGTCGATCCTATCCCGGAGACTGCTAGG
TGCTATAGACACTTCGTATCCATAAGCATTCCACGGTTTACCTAGAAGCAGTCCACTAGGCGCAG
CACCCGAACAAGCTGTGGCGGATGCGGTTCGCAAAGCCTATGTAGCCGTTTGTTCCGGGCTCGTG
AACTTGACGTGCCAGGGGTTACAGTACCGGGGTTGGCTCAGAGGGAAGGGGAAAAACCCCCTCCG
GTATCAGGACGTGAGCCAGTGATGTCTACGCCGGAGTCAGATTTCAGTGTAGGGGTTCGCGTCGT
TAATACTGGCTACATGACCTGCCCTGATAGAGCAACAAACCCTGAACCCGCCCTGTGCCGCTCTA
TGTAGCGAATTGCTTCCCCGTGCATATGGAGTTGGAGTGTTGGTTGTCGGAGTGAGCCTTTCCCT
GTCAACGGTGGGAGCGCACGACTGCCCGCTACACATCTAGAACCG
Right flanking sequence: Indices 693019 -- 693518
TGTGGGGTGGGGGCCCGTACACCCTGATACTTGGACTAAGTAACCCCAACAACCGGTCCACGACT
TGTAGCGATGGTAAACGGGGTGGCGGGCCACTACACTGTCGACGGTGAGCCGAGGAGGGTTATTG
TAGGTGCTCAGTCGCCGGCTTGGCTTCAGGCAGCGTATAGCGGGAGGCAGCGTATATTCTATGGA
GCGGATGGGCGCCACATAACACATACTGGGTGGGGCGTGATATTGCCGCTTGGGCTCGCATGTGC
GGGTGGGTGGCTGCGGAACGAGTGGCGTGGTCAACCGTATATGGACCCACCAACCGTACAAGTGT
TGGCCAACTGCCCGCATACGTACATCTAATCCTGCCCTCATACCATCAATAGTAGTACCTTCATA
CGTAGACATATGAATTTGTATTTATTAACTGCCAGAGTGAGAACCGACAGCCGCTATGTAGCCAG
CCGGGCCCGACTGCAGGTACCGAACCAACACGCTCCGAGAACACG
Found at i:694654 original size:14 final size:14
Alignment explanation
Indices: 694635--694662 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
694625 ACATAGGTTC
694635 CCCCACGTGTACCT
1 CCCCACGTGTACCT
694649 CCCCACGTGTACCT
1 CCCCACGTGTACCT
694663 ATACGATGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.50, G:0.14, T:0.21
Consensus pattern (14 bp):
CCCCACGTGTACCT
Left flanking sequence: Indices 694135 -- 694634
AGCCGGCTGCCTGACCCACTACGTTGTTTCTTTGTTCGCCAATAACTGCCCGCCCTACTCCTGCT
ACCTCCTCAGCCGAGCCAGTAGCGTATTACTGATCAGGAGCCAACTATGTAGCGGCGCATACGAG
ACCGAACCCCAGCCGGCTACGTGTGCAGCGAGCCGGCTGCCTGCCTTCTGTAGCGTGCACGGTAA
TATCAGAATTATGGAACATGTACCCTTTCCCCTGCTATGAGGGCCACCACCTGAACCAGAACTAG
TTGCTCACCACCTCCCGACTACCTTATATGCTTCCCCCCTCGACCCCTATGATTGCGGAAAGATG
CCGATGACAAGTAGGGAATATGAATATTGATAAAGATGCCGATGACAAGTATATAACGACTGCAG
CGAGCCATGTGTATCTGGGCACAACCCATGACGGACGGTCGGTGCGATGTAGCCGGCGACTGATA
TAGCCTACGTACCCGCCCTCAACGGTACGGTGGTTACATAGGTTC
Right flanking sequence: Indices 694663 -- 695162
ATACGATGCCCACCACTACAACACATCCTGGAAAACGGCTCCTCGTTGGCCTAGCCCACTCAGGA
AGACATGCAAGCCCTGCCAGCTCATACGCTCACAACGTCAGGCGTCATGGGGCAACGGTCGCCGG
TAACACTAGCCATAATAGTTCTATACGCTATGTGGGGGCAGTCGATTTATGTTTCAAAATCAAAT
CATGATGCCGTGCCGGTGCTGCTACTGGTATTTCATCTGTGTCTACGTGGCACGGTGTAAGCGGT
TTAGCAGTTGATGCTACGTGGAAACCAGCACATCATAAGCCTGTCCCCTGTGATTTATACAGCCT
GTTCCCGCGCACGCGTCGGTCGTATATAGTTGTTGTTCCTAAGCCGCCACTTCGGATGACGGGCC
TTTTCCGGAGCGTGTTGGTTCGGTCTCGTCTTCAGGTGTTATGCCAGCCGGTGGGGAGCCACTTG
TAATGCTTTCTGTCTGCCCTACACAGCTACGCGACCCCTGATACG
Found at i:697007 original size:12 final size:12
Alignment explanation
Indices: 696990--697033 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
696980 GGCAGAACTA
696990 GTTGTGGTCTAC
1 GTTGTGGTCTAC
*
697002 GTTGTGGTTGTA-
1 GTTGTGG-TCTAC
697014 GTTGTGGTCTAC
1 GTTGTGGTCTAC
697026 GTTGTGGT
1 GTTGTGGT
697034 TGTTGTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 3 0.11
12 22 0.79
13 3 0.11
ACGTcount: A:0.07, C:0.09, G:0.39, T:0.45
Consensus pattern (12 bp):
GTTGTGGTCTAC
Left flanking sequence: Indices 696490 -- 696989
GAACTAGTTCTGCCTGCCTTACGTACTGGCTCCGGCTCGTCGGGTTGTGGGGGTTCACGAATAAA
GGATGAGGTGGCGCCTACGGGGAAATAGAGTTACGACTACCACAACAACATGTACCGGAAGCGTA
TAATATCATGGGGGGTTGTAGCCGGGAGCGGATAAAGGTTATTCAGTAGTGTACGGGTGTAACGT
AGCTCACAAACGTAGGGCAGGATGCAGGGGTCGAGGTGCCGGGGTTCGCGCGCACGGGAGTCGGT
GAGCTTGTTAGGGGACTGGCCTTTACGCCACATGGACGTCACACTACCCCGATACAACACGGTGC
GAGTGAGCGTATATGTGCCGGGAAAGGGCGTTCCACCTTGATATAACGGGAAGGGAAGGGAAGGG
GATAGTGTGGGTTACAGGCATAGGTTCGCTTGTAGCCGGGACTTGCGATCGAGTAACGGCGGCGC
GGCGCGGCTAGGCTGCTTGCGTTCCGCCCGGCAGCGGCAGAACTA
Right flanking sequence: Indices 697034 -- 697533
TGTTGTTGGTTGTACGTAATGGCTATCCAACACGCTTCGCTATACGTACCGGGGTTTGGATCAGT
CGTGGGACCGGCTGCCCGTGCTCTAAGTGCGCTCACTCGCCCTGATACGTGCAAGCTACGGAGTT
TGGCAGTGCCCAAACACTCCATCGTGATACTTGTCTCCGTCACACGCCTCCACGGCTACATAGTA
CTTGGATACTAACACGCCCACCAGCACCAGTACGGAATTCCCAGCCTCGTTCGTAACTGGCTATG
GCTGTATCAGGGAACCAGCATAGTTCTCTAACCCCCTAACCCCGGCTACCATCGCTGAGTGCCAC
CTCGCTGCGGCGGTTCGCGTGTTGGTTGTTCGAGCCCCGAGTAGTGCACGCTCACCCCGCTACTG
ATGGCTCGTGTGGGGAGCGGTACCAGGTGGTTGTAGCGGGAAGGAGCTACAGAGTTTGGGTATAG
GCTGGCCGTTATATAAGCTCACTCGACTACCAGTGATGTCTAGCA
Found at i:697020 original size:24 final size:24
Alignment explanation
Indices: 696988--697041 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
696978 GCGGCAGAAC
696988 TAGTTGTGGTCTACGTTGTGGTTG
1 TAGTTGTGGTCTACGTTGTGGTTG
697012 TAGTTGTGGTCTACGTTGTGGTTG
1 TAGTTGTGGTCTACGTTGTGGTTG
*
697036 TTGTTG
1 TAGTTG
697042 GTTGTACGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.07, C:0.07, G:0.37, T:0.48
Consensus pattern (24 bp):
TAGTTGTGGTCTACGTTGTGGTTG
Left flanking sequence: Indices 696488 -- 696987
GGGAACTAGTTCTGCCTGCCTTACGTACTGGCTCCGGCTCGTCGGGTTGTGGGGGTTCACGAATA
AAGGATGAGGTGGCGCCTACGGGGAAATAGAGTTACGACTACCACAACAACATGTACCGGAAGCG
TATAATATCATGGGGGGTTGTAGCCGGGAGCGGATAAAGGTTATTCAGTAGTGTACGGGTGTAAC
GTAGCTCACAAACGTAGGGCAGGATGCAGGGGTCGAGGTGCCGGGGTTCGCGCGCACGGGAGTCG
GTGAGCTTGTTAGGGGACTGGCCTTTACGCCACATGGACGTCACACTACCCCGATACAACACGGT
GCGAGTGAGCGTATATGTGCCGGGAAAGGGCGTTCCACCTTGATATAACGGGAAGGGAAGGGAAG
GGGATAGTGTGGGTTACAGGCATAGGTTCGCTTGTAGCCGGGACTTGCGATCGAGTAACGGCGGC
GCGGCGCGGCTAGGCTGCTTGCGTTCCGCCCGGCAGCGGCAGAAC
Right flanking sequence: Indices 697042 -- 697541
GTTGTACGTAATGGCTATCCAACACGCTTCGCTATACGTACCGGGGTTTGGATCAGTCGTGGGAC
CGGCTGCCCGTGCTCTAAGTGCGCTCACTCGCCCTGATACGTGCAAGCTACGGAGTTTGGCAGTG
CCCAAACACTCCATCGTGATACTTGTCTCCGTCACACGCCTCCACGGCTACATAGTACTTGGATA
CTAACACGCCCACCAGCACCAGTACGGAATTCCCAGCCTCGTTCGTAACTGGCTATGGCTGTATC
AGGGAACCAGCATAGTTCTCTAACCCCCTAACCCCGGCTACCATCGCTGAGTGCCACCTCGCTGC
GGCGGTTCGCGTGTTGGTTGTTCGAGCCCCGAGTAGTGCACGCTCACCCCGCTACTGATGGCTCG
TGTGGGGAGCGGTACCAGGTGGTTGTAGCGGGAAGGAGCTACAGAGTTTGGGTATAGGCTGGCCG
TTATATAAGCTCACTCGACTACCAGTGATGTCTAGCATGGCCCGC
Found at i:704054 original size:37 final size:37
Alignment explanation
Indices: 704004--704078 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
703994 CACCGTATAC
704004 CAATAGACTGAAACTCCCCGGTGCGCCACGTGGCGAG
1 CAATAGACTGAAACTCCCCGGTGCGCCACGTGGCGAG
704041 CAATAGACTGAAACTCCCCGGTGCGCCACGTGGCGAG
1 CAATAGACTGAAACTCCCCGGTGCGCCACGTGGCGAG
704078 C
1 C
704079 TGGCTGGGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.33, G:0.29, T:0.13
Consensus pattern (37 bp):
CAATAGACTGAAACTCCCCGGTGCGCCACGTGGCGAG
Left flanking sequence: Indices 703504 -- 704003
GTATACGGAGTAGACTCAATACGGCTTGTAGCGGGAAGTTGTTCAGGGGTATGCGTGCAGGGGTT
TGTGATTATTAACGGGTAGACAGGTGGCGTGAGGAGGGCTATAGGGTTGTGTAGGGCAGGCAGTG
CCGCAGTACGGAACACAACAACCAGCTCAGTCCACGCCAGGCTCGCTGCCCTCATATATAACACT
TGCGGTATCGGGAAGTAGTAGTTATATATGAGTGAGTGTGGGGGCCGGCTCAGTAACGCATATGA
GGGGGAGCAACCCCGCCTACTGAACCTGTAACTAGAAAACGCATACCGAACCTACTGCATCCTGC
CTATTGTAACGGGACCGCATCCTGCCCCACATAGACAGACGCGCTCACTCGACTGGTAATCCGGA
AACCCCTGAGTCGGCTCGCTGCGCTCACTCACTAACGGCAGGAGTCGTAGGTTCATAGTTCGATC
TCAGTGGCCAGGGAACGCTAACGATATATACGTACCACCGTATAC
Right flanking sequence: Indices 704079 -- 704578
TGGCTGGGGTAACTATGTGGACGTATGGGGGCAGGCAGAGTACTGAAGCTATTACCTGTGAGTTA
CGGAGGAAGGCCCCACCACTGCGCTATAGCCGCAGCTAGTGTTACCGGGGTGATAGTTCATTTCT
TAGTACAAACTGCAGAGCGGGAAACAAATCCTGTATGTGCGAGTGGGCGTATAGTTCAGTATCCG
GGCGAGTCGTTGTACGCCTGTGCGAGCTTATATAACGATATCACTTCATAACCCTCATCATCATA
ATATGAGGAGATTTACGCCTTGTGGTGGAACTGTATCTGCCTTCCTCCGTGGCTGTCCCTGTAGC
CTGTAGCGGGACCCGTAACTACATGTTCACGCGTCTAGTGCACGGGCAGCCCCACAACCGTACTG
CTGCGAACCGATCCCCTGTGCGAGTGACCAACTACAAACGCCAGCCGCCACAGGAGCATCACCCC
CAGTAACTACCCCTTACGCCTTCCGCACCTCACTATACATGCTCT
Found at i:706295 original size:14 final size:14
Alignment explanation
Indices: 706276--706303 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
706266 CCCTGCTAAT
706276 CGATGCAGTTGGCG
1 CGATGCAGTTGGCG
706290 CGATGCAGTTGGCG
1 CGATGCAGTTGGCG
706304 GGGTTCGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.43, T:0.21
Consensus pattern (14 bp):
CGATGCAGTTGGCG
Left flanking sequence: Indices 705776 -- 706275
TCCTTCGACCCCACCTCAATAACCTGTTAGAGGACTGCCCAAAGTGATAGGGTTATGAAGTTGTG
TAGGCAGTTCGCTGCGCTATGTAGGGCCATCGTACCGCAACTTACCTGGGAACGGCGTAATCTAC
GTAGAAAGGGAACTAGTTACAGGGTTTGATAACGGAACCTACAAGCCTTCCGTGAACGAAGCGTA
ACGACTCAGGGGGACTGAAAAGCCACGTACCTCGCCACGTAACTCCTGTAACGCTATGTGGGGCT
GGGAGGCCACATAAACCAATATAGCGGTTTAGCCGGCAGAAAGCATATAGAACTATGTGGCTTAG
TATGCAGGGTGTAACGTGAACTATAGCCGGATGTATGCAGGGTGTAACGTAGCTCACTCGTTATA
CAGGGACTAGCCCGGCCGGCGTGTAACGTAGCTCACTCGTTATACAGGATGCGGCAGGCGGCGTC
TATAGGGCACATACGACGACGGGGGTGATGTCGCTCCCTGCTAAT
Right flanking sequence: Indices 706304 -- 706803
GGGTTCGGGTCAGTGATCTACACCGGCCCACATAGTGTTGAAGTAGCTGCCTTCTGTGGCCCAGT
CGACGCGAGGGAGGGTGTAGGCTATGGAACTGATACAACAACGATATACGGATGCGGGCTCGTGT
TACGACGTACGGGGTTACAGGGTCAACTACTACTCCAGATACAACTCCATCGTACGTATCAGGGG
AACCAACTCCGTAGACAGGGGGAGCATTATCAACTACCGCTGTTGGGCTCTATACTGCAGGTTCA
GTGTTCCACATTATAACACGCATATTAACCGCTAACTCCTACAACCTACTAATACCCCGACAAAT
ACCCCACCTCTTGAATCCAAGCCAATAATGCCCCCACACTCACTCATATGTAACACTACCCGGTT
TGCCAGCTCAGTAACCGCATCAACGTGCGGAAATACTCCTGTTGTTATCAACGTATTCAACCGGT
GGCTCTATGTATCATGGAAAGCCGTACTGTTCGCAACTAGTTCCT
Found at i:708197 original size:12 final size:12
Alignment explanation
Indices: 708180--708204 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
708170 GTTAGGCGGG
708180 CAACTACCGCCA
1 CAACTACCGCCA
708192 CAACTACCGCCA
1 CAACTACCGCCA
708204 C
1 C
708205 CATATGGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.52, G:0.08, T:0.08
Consensus pattern (12 bp):
CAACTACCGCCA
Left flanking sequence: Indices 707680 -- 708179
TTAGGTTCCCCCCATCCCATCCGATGGAGTTGTCGTGGACGGCTATGTATCAGCGGAAGGCTCCG
TGAAGGGACCGGCGTGCACGGGGGTTTGTCTAGGTGAGCGGAGCAGTATATGCCACTTGCAGTTA
CGTACGGTTACCCGGGCTATAGTTGTTACTCAAGCGTGTTGGGTATGAACTTTCCCGACTCATGT
GTGCCGGACTGCCCTTACCCCATGTAGCCTGTATCGGGCGGGGTTGGCTCCTTCCGTAACTACAG
ACACGAATAACGGCAGGCGGTTGTGGTTCCCACGAATACGGAGATCGATATAGACACGGCAGGCA
GATTCAATAATCTGGTAATAGCTGACTCCCACTGGAATTCTCCCGGATAGGAGCTCAAGGAAAGG
TCTCATGGGAGCCGTACATGGTCCGCCCCACTCTGCGCTAGGCCTGCATTTCCCGTGTTCGCTGC
ACGCGGCGTGGCTACCCGAATCTGGGGTCGGTTGTGTTAGGCGGG
Right flanking sequence: Indices 708205 -- 708704
CATATGGAATGGGTCTCCCCTGACAGTTTTCTGTCAGTACCTATTCTGGTGATGCACACCTCCCA
GCGGCAAGTATGGCTGCGCTAGTGGCTCTTCTGTGGTTCTCCCCGTTGTGAGAACGGTGAGTCAA
GGTCCTCTGCTTCCGGAGGATCGACAACGACGCCCGGTACACGCTGGTTAGCAGTGTTTCGAGCA
CTGGCGGAATTCTGACTACTTAGATGGCTCGCGTGCCTCCCTATGAGTGGCAGGGTAGTCCCAGC
TGTTCTATGGTGACGGGTGATGCGCTGGTTGTGCCTGGCTGGTGTCTGATCCCTGAGGCAGGCGT
AGCATCTCTAGTTAGCCACCGCTTGGAATGGCATTTCTAGCTAGCCACTGATGGACCAGAGGAGG
AAGTAACGTCTTCAATTGACATTGCTTATTGTCACAAAATCACTTGCCCGTTGATAGTGGTTGCC
ACTACGAACCCCGCGTTGCTAGCAGCTATTGGGAGAAAGACACGG
Found at i:712191 original size:3 final size:3
Alignment explanation
Indices: 712183--712246 Score: 119
Period size: 3 Copynumber: 21.0 Consensus size: 3
712173 ACCAACCATT
712183 GAC GAC GACC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC
1 GAC GAC GA-C GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC
712229 GAC GAC GAC GAC GAC GAC
1 GAC GAC GAC GAC GAC GAC
712247 TATATAGAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 57 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.34, G:0.33, T:0.00
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 711683 -- 712182
ACATATACGTCATTTTGTTGACCCGGTTCCAGTCCCAGAAGCCGGTAGAGACAAATGCAGAGACG
TGATGTAGCGCCCACCCATTTATTGACGCTAGCGCCCAGCATCAGAGAAAGACCCAGAAACGGTA
TCAGCACCACCCACCGAGCCTGTGCCGGCTTATCCACCACAACTGTAGCCAGATGCGACGGGCTT
ATACAGGCATGGGTAGCTCCACCTACAGCTGCGTACTAGATCCGTAACTACACGGCATCATTAGT
AGAGCTAGCGGCTTACCATAACGCACTCGTACCTGGAGCACGCCACGTTGGGAAGCTAATGCATT
GACCCCATAACGCACGAGTTGCGGCTTCAGTAGCTTGGGGTACCGCCGAGGCAAAGAACCTGTGC
TTATCCGGGATACCGCCTGTAGTCGAGGAGGAAAAGCACCTGTGGTAGAACGAGTAGTTGATCGA
GTTTAGCCGCCCCCACAAGTAGCAGCTTCCTCATAACCAACCATT
Right flanking sequence: Indices 712247 -- 712746
TATATAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGCAAGGCAAGCAAGCAAGCAAGCA
AGCAAGCAAGCAAGCAGCCGCCTTCAATAACATATACATATAGTTAGCTCGTTCCCCAGTCCCCA
GCCTCGCCACGTATTGCACGGCGGCTAGGCTATATATGTACGGTACGGTACGGCCGGTCATATAG
TGAGGTTGGATTTCTGTCCGGTTCTTACAACACCCAAGTAACGCAGGTGGTTCCGTCTATAGATG
GATTTGTACCCCCAAGTAACGCAGGTGGTTTCGTGTATAGATGGATTCGTATATAGTAATGCTAT
TCCCTCCCCGCTTGGTCGCCTTGGTCTGCCCCTGTATCTGCAACGGTTATGTAGTGGGATGGTAG
CCTACTGATGAGATAAGGCAAGGATGCTCGAGAATCTGCTTCGATCGCAGGTTCAATTGCAAGCA
AGCGTGTGCCCTATTGCTAGGGCTGGTTCTAGCCTGTAGTTGCGA
Found at i:712263 original size:5 final size:5
Alignment explanation
Indices: 712253--712293 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
712243 CGACTATATA
*
712253 GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GCAAG G
1 GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG GAAAG G
712294 CAAGCAAGCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.56, C:0.02, G:0.41, T:0.00
Consensus pattern (5 bp):
GAAAG
Left flanking sequence: Indices 711753 -- 712252
TAGCGCCCACCCATTTATTGACGCTAGCGCCCAGCATCAGAGAAAGACCCAGAAACGGTATCAGC
ACCACCCACCGAGCCTGTGCCGGCTTATCCACCACAACTGTAGCCAGATGCGACGGGCTTATACA
GGCATGGGTAGCTCCACCTACAGCTGCGTACTAGATCCGTAACTACACGGCATCATTAGTAGAGC
TAGCGGCTTACCATAACGCACTCGTACCTGGAGCACGCCACGTTGGGAAGCTAATGCATTGACCC
CATAACGCACGAGTTGCGGCTTCAGTAGCTTGGGGTACCGCCGAGGCAAAGAACCTGTGCTTATC
CGGGATACCGCCTGTAGTCGAGGAGGAAAAGCACCTGTGGTAGAACGAGTAGTTGATCGAGTTTA
GCCGCCCCCACAAGTAGCAGCTTCCTCATAACCAACCATTGACGACGACCGACGACGACGACGAC
GACGACGACGACGACGACGACGACGACGACGACGACGACTATATA
Right flanking sequence: Indices 712294 -- 712793
CAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAGCCGCCTTCAATAACATATACATATAGTTAG
CTCGTTCCCCAGTCCCCAGCCTCGCCACGTATTGCACGGCGGCTAGGCTATATATGTACGGTACG
GTACGGCCGGTCATATAGTGAGGTTGGATTTCTGTCCGGTTCTTACAACACCCAAGTAACGCAGG
TGGTTCCGTCTATAGATGGATTTGTACCCCCAAGTAACGCAGGTGGTTTCGTGTATAGATGGATT
CGTATATAGTAATGCTATTCCCTCCCCGCTTGGTCGCCTTGGTCTGCCCCTGTATCTGCAACGGT
TATGTAGTGGGATGGTAGCCTACTGATGAGATAAGGCAAGGATGCTCGAGAATCTGCTTCGATCG
CAGGTTCAATTGCAAGCAAGCGTGTGCCCTATTGCTAGGGCTGGTTCTAGCCTGTAGTTGCGAAA
GGGCGTATCAGGAGTCTATGAAGCCAGCTATTGACCCGGCCGGCT
Found at i:712302 original size:4 final size:4
Alignment explanation
Indices: 712288--712327 Score: 71
Period size: 4 Copynumber: 9.8 Consensus size: 4
712278 GAAAGGAAAG
712288 GCAA GGCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCA
1 GCAA -GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCAA GCA
712328 GCCGCCTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 31 0.89
5 4 0.11
ACGTcount: A:0.47, C:0.25, G:0.28, T:0.00
Consensus pattern (4 bp):
GCAA
Left flanking sequence: Indices 711788 -- 712287
ATCAGAGAAAGACCCAGAAACGGTATCAGCACCACCCACCGAGCCTGTGCCGGCTTATCCACCAC
AACTGTAGCCAGATGCGACGGGCTTATACAGGCATGGGTAGCTCCACCTACAGCTGCGTACTAGA
TCCGTAACTACACGGCATCATTAGTAGAGCTAGCGGCTTACCATAACGCACTCGTACCTGGAGCA
CGCCACGTTGGGAAGCTAATGCATTGACCCCATAACGCACGAGTTGCGGCTTCAGTAGCTTGGGG
TACCGCCGAGGCAAAGAACCTGTGCTTATCCGGGATACCGCCTGTAGTCGAGGAGGAAAAGCACC
TGTGGTAGAACGAGTAGTTGATCGAGTTTAGCCGCCCCCACAAGTAGCAGCTTCCTCATAACCAA
CCATTGACGACGACCGACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGA
CGACTATATAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAG
Right flanking sequence: Indices 712328 -- 712827
GCCGCCTTCAATAACATATACATATAGTTAGCTCGTTCCCCAGTCCCCAGCCTCGCCACGTATTG
CACGGCGGCTAGGCTATATATGTACGGTACGGTACGGCCGGTCATATAGTGAGGTTGGATTTCTG
TCCGGTTCTTACAACACCCAAGTAACGCAGGTGGTTCCGTCTATAGATGGATTTGTACCCCCAAG
TAACGCAGGTGGTTTCGTGTATAGATGGATTCGTATATAGTAATGCTATTCCCTCCCCGCTTGGT
CGCCTTGGTCTGCCCCTGTATCTGCAACGGTTATGTAGTGGGATGGTAGCCTACTGATGAGATAA
GGCAAGGATGCTCGAGAATCTGCTTCGATCGCAGGTTCAATTGCAAGCAAGCGTGTGCCCTATTG
CTAGGGCTGGTTCTAGCCTGTAGTTGCGAAAGGGCGTATCAGGAGTCTATGAAGCCAGCTATTGA
CCCGGCCGGCTACTAATGGAAAAACGAGAGCCCCTCCCACTACCA
Found at i:713163 original size:13 final size:13
Alignment explanation
Indices: 713145--713188 Score: 79
Period size: 13 Copynumber: 3.4 Consensus size: 13
713135 TTGGGGTTTT
713145 GTAATAGGGGAAG
1 GTAATAGGGGAAG
713158 GTAATAGGGGAAG
1 GTAATAGGGGAAG
*
713171 GTAACAGGGGAAG
1 GTAATAGGGGAAG
713184 GTAAT
1 GTAAT
713189 CATGGCTATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.39, C:0.02, G:0.43, T:0.16
Consensus pattern (13 bp):
GTAATAGGGGAAG
Left flanking sequence: Indices 712645 -- 713144
TGAGATAAGGCAAGGATGCTCGAGAATCTGCTTCGATCGCAGGTTCAATTGCAAGCAAGCGTGTG
CCCTATTGCTAGGGCTGGTTCTAGCCTGTAGTTGCGAAAGGGCGTATCAGGAGTCTATGAAGCCA
GCTATTGACCCGGCCGGCTACTAATGGAAAAACGAGAGCCCCTCCCACTACCAAGCAAGGGTTAG
TTGTGTAGGCTCCACCACCATATTGAAAAGCTACATAAGAACACTAAGAAGGAACGGCAGAATCA
GAACACTAAGAAGGAACGAGACAGCACTAGATCAGCCTACATGGAGCAAGCAAGAACCACTGACA
GAGGCCGGTACCGGCACGTATGGTTCAATAAGTTGCCAGCCAGCCGCTAAACTCATGTACTATAT
AGATGGAGCGAGCCACCGGGGCAGTCATATGCTTCTGTGAATAGCCACTCCGGAAACATCGATGT
TCTACCGAACTGAACGACCTACTTCCCCTATGGGTTTGGGGTTTT
Right flanking sequence: Indices 713189 -- 713688
CATGGCTATCTAGCTCAATAGGCCTCGGTCGTCGTATTCTTGAATGCGCCGAATGGCGCCCCTAA
CACCACGGCACGAAGTGGTTCCCAAACAACAACCATATAAGCGGGCGTGTTGTGATGTTTCTACG
TAGGCCCATACGCCCGGGCACAGAAGAGTATGTTAATTGATCTATATAGATGTACTCTGTACCTA
GCTCCACTATAGCAGTCTGTGGGGCAACCGTTGTCGTTACCCGTCTCACGCCGCAGCAAGTACCA
ACGTAGTTATGTACGGTACTTGCGCTGCCCACATAGTGGTGGTTGAGGGGTAGTGGCGAGTGCTG
GCCATGTGTCTCCGGGGAATTGGATATAGCAGGCAACCATACTGAACCGGTGCACGTTTCTAGAT
CATGAGATCGCCTCGTTTCACTCGCCCCTCGGTTTAGCACCCAGCCTATGGACACCCACACTTGC
TACATAGTATCGCGAGTCCAAGAGGTTTCGTGTTGATGGTAGAGG
Found at i:715834 original size:26 final size:26
Alignment explanation
Indices: 715805--715863 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
715795 GTAACTCTGT
715805 CCCCGGTACGTGCACGCCTGATCCTGC
1 CCCCGGTAC-TGCACGCCTGATCCTGC
** *
715832 CCCCGGTACTGTTCGCCTGATCCTGT
1 CCCCGGTACTGCACGCCTGATCCTGC
715858 CCCCGG
1 CCCCGG
715864 GCCACATAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.08, C:0.44, G:0.25, T:0.22
Consensus pattern (26 bp):
CCCCGGTACTGCACGCCTGATCCTGC
Left flanking sequence: Indices 715305 -- 715804
ATGGTATCAGGTTGATCACTCTCTATAGAAGCCTACGGGGTAGACGAGTGGTTTCAACCACAACA
CTAAGCCCAGGTTCAGGTTTCTAGTTCCTGGTACACCTGGGTAGTTCTCTCTTTATAGCAGCTGT
CAGGGCTACGTAGGGGGTACCACAACCCCTACACTGCCTGTAGCGAACCCTGATACGTGCACCTC
ACTCCGACCTATGTAGCCTCCGACTCCGTAGACTTACCCGTGCGCGCCAACCCGAGCAGGAAGTG
GCGCAGCATGGTGCGAGTGATCATGTTGTATCTACACCGTGCCACATAGACTGCTATTAGTGAAA
ATGGACACCGTGAGCGAGCCGTGCGTATAGTCGCCTTAGTGAGTCCTGCTACCTCTCTCCTCGTC
GATCATAGTGTTTGCCCATAGCCATGTATATAGTTAACTGCCCGCATACTCTAATGGACGTCACG
CTACCCCGATACATAGCCTTCCACCTGGTAGCCAAGTAACTCTGT
Right flanking sequence: Indices 715864 -- 716363
GCCACATAGACATCAACCGCTCGTACGTACAACGCCGCCGGAGCACCACACCCTGCTGAATATTG
ACAGCCTGTTCAACCACGAGATGATCTACACCGTGTCACATAGACATCAACCGGAATCCGCTAAT
AGGAGCCATGTGCGTATAGTCGCTGGCTGGGGTGCATACGTGAGGGTATAGGCTGCCGGTCGATC
CGCATCGCTCAGTGAATCTTCGTTAAATACCCTTTCCTCGTCGGTGCAGGTAAGTAGATAGATAA
GGCTCCCTCGCCCACTAGTACTGGTACTTCTATATGTGCTGGTGCGGTTGGTGCTGGTGCGGTTC
CTTCCGTGAGCCAGTTTTGTCTAGCAGTATCAGTAGTATACCCCACCGTATATAGATGAAGCCAA
GCCAGCACGTACTGAATGTTCGGTCGGGGAAGGATCTCGTATCGCTTTTGATGGCTGTGGCGTAG
CAGGTATGGCTATTTCTCTATGAAGCTGCCTTCCTCCGGAGCGTG
Found at i:715861 original size:27 final size:28
Alignment explanation
Indices: 715801--715861 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
715791 CCAAGTAACT
715801 CTGT-CCCCGGTACGTGCACGCCTGATC
1 CTGTCCCCCGGTACGTGCACGCCTGATC
**
715828 CTG-CCCCCGGTAC-TGTTCGCCTGATC
1 CTGTCCCCCGGTACGTGCACGCCTGATC
715854 CTGTCCCC
1 CTGTCCCC
715862 GGGCCACATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.08, C:0.44, G:0.23, T:0.25
Consensus pattern (28 bp):
CTGTCCCCCGGTACGTGCACGCCTGATC
Left flanking sequence: Indices 715301 -- 715800
TTACATGGTATCAGGTTGATCACTCTCTATAGAAGCCTACGGGGTAGACGAGTGGTTTCAACCAC
AACACTAAGCCCAGGTTCAGGTTTCTAGTTCCTGGTACACCTGGGTAGTTCTCTCTTTATAGCAG
CTGTCAGGGCTACGTAGGGGGTACCACAACCCCTACACTGCCTGTAGCGAACCCTGATACGTGCA
CCTCACTCCGACCTATGTAGCCTCCGACTCCGTAGACTTACCCGTGCGCGCCAACCCGAGCAGGA
AGTGGCGCAGCATGGTGCGAGTGATCATGTTGTATCTACACCGTGCCACATAGACTGCTATTAGT
GAAAATGGACACCGTGAGCGAGCCGTGCGTATAGTCGCCTTAGTGAGTCCTGCTACCTCTCTCCT
CGTCGATCATAGTGTTTGCCCATAGCCATGTATATAGTTAACTGCCCGCATACTCTAATGGACGT
CACGCTACCCCGATACATAGCCTTCCACCTGGTAGCCAAGTAACT
Right flanking sequence: Indices 715862 -- 716361
GGGCCACATAGACATCAACCGCTCGTACGTACAACGCCGCCGGAGCACCACACCCTGCTGAATAT
TGACAGCCTGTTCAACCACGAGATGATCTACACCGTGTCACATAGACATCAACCGGAATCCGCTA
ATAGGAGCCATGTGCGTATAGTCGCTGGCTGGGGTGCATACGTGAGGGTATAGGCTGCCGGTCGA
TCCGCATCGCTCAGTGAATCTTCGTTAAATACCCTTTCCTCGTCGGTGCAGGTAAGTAGATAGAT
AAGGCTCCCTCGCCCACTAGTACTGGTACTTCTATATGTGCTGGTGCGGTTGGTGCTGGTGCGGT
TCCTTCCGTGAGCCAGTTTTGTCTAGCAGTATCAGTAGTATACCCCACCGTATATAGATGAAGCC
AAGCCAGCACGTACTGAATGTTCGGTCGGGGAAGGATCTCGTATCGCTTTTGATGGCTGTGGCGT
AGCAGGTATGGCTATTTCTCTATGAAGCTGCCTTCCTCCGGAGCG
Found at i:716179 original size:15 final size:15
Alignment explanation
Indices: 716159--716187 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
716149 ACTTCTATAT
716159 GTGCTGGTGCGGTTG
1 GTGCTGGTGCGGTTG
716174 GTGCTGGTGCGGTT
1 GTGCTGGTGCGGTT
716188 CCTTCCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.52, T:0.34
Consensus pattern (15 bp):
GTGCTGGTGCGGTTG
Left flanking sequence: Indices 715659 -- 716158
GTCGCCTTAGTGAGTCCTGCTACCTCTCTCCTCGTCGATCATAGTGTTTGCCCATAGCCATGTAT
ATAGTTAACTGCCCGCATACTCTAATGGACGTCACGCTACCCCGATACATAGCCTTCCACCTGGT
AGCCAAGTAACTCTGTCCCCGGTACGTGCACGCCTGATCCTGCCCCCGGTACTGTTCGCCTGATC
CTGTCCCCGGGCCACATAGACATCAACCGCTCGTACGTACAACGCCGCCGGAGCACCACACCCTG
CTGAATATTGACAGCCTGTTCAACCACGAGATGATCTACACCGTGTCACATAGACATCAACCGGA
ATCCGCTAATAGGAGCCATGTGCGTATAGTCGCTGGCTGGGGTGCATACGTGAGGGTATAGGCTG
CCGGTCGATCCGCATCGCTCAGTGAATCTTCGTTAAATACCCTTTCCTCGTCGGTGCAGGTAAGT
AGATAGATAAGGCTCCCTCGCCCACTAGTACTGGTACTTCTATAT
Right flanking sequence: Indices 716188 -- 716687
CCTTCCGTGAGCCAGTTTTGTCTAGCAGTATCAGTAGTATACCCCACCGTATATAGATGAAGCCA
AGCCAGCACGTACTGAATGTTCGGTCGGGGAAGGATCTCGTATCGCTTTTGATGGCTGTGGCGTA
GCAGGTATGGCTATTTCTCTATGAAGCTGCCTTCCTCCGGAGCGTGCACGGGCGGCCTATAGGCA
AAGGGATAGTTAGACGAGCCAGGGCGAAGCGGTAGCCCGCGTGTTCCAGGTGACCGAGGAGGGAT
ATGTTGTTAGGGCTAGCGGTATTGGTACGACTGAAGAGAGGGTTATATAGAGAGGCCGGGGAGCT
CAGTACTTGCCTTCCACTGGCCATGTTGACTTAGTAGGCGCACCTGTCCCCAGCCACTAACGCTT
CTAGAACCGACAGCCTATACCCGACACCTAGTTGCCCCTATTGACTTTCTGTTGGGCTCCTGACT
GCAGGGGTACACGTGTATGAACTTCCGTGCCACGTTCCCCGCATC
Found at i:720235 original size:12 final size:12
Alignment explanation
Indices: 720215--720261 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
720205 AGGTCAGAAC
* *
720215 TAGTTGTGGTTG
1 TAGTCGTGGTCG
720227 TAGTCGTGGTCG
1 TAGTCGTGGTCG
720239 TAGTCGTGGTCG
1 TAGTCGTGGTCG
720251 TAGTCGTGGTC
1 TAGTCGTGGTC
720262 TACGTTGTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.09, C:0.13, G:0.40, T:0.38
Consensus pattern (12 bp):
TAGTCGTGGTCG
Left flanking sequence: Indices 719715 -- 720214
CTGGTTTACGCTACATAACCGTTCACGAGCCCGGCACCCGGGCTACCCGGCCGACCAGTTTCCCT
CGTATGCGGGTAGAGGGGCATGCGTGCAGTCCTCGCGTTACACCGGGATCAGCCAACTAACCAAC
TACGTAGACCGTTTATGAGCTATCAGGGTGTGTAAGTGGTGGGGCGCGCGAGTGAGCTGCTTTGC
GAACGGGGAGGGGTTCTATATTACAAAGTAGCCGAGCCAGTGTCACAAGTTACGGGTGTGGGGCG
TTGTACTGGATGAGGAATATGTGTAGGGTGTGGGGTGTTGTACTGGATGAGGAATATGAGGACCT
CACTCATATATAACTGATGCCGGCTACATACGGAGCCTTAGGAGTCAAACAGCATGTGCGTGGGT
TTGTTGCTCTGGCTCGCTAGTTATACGGGAAGTTGCGGTATGCGGGGAACTAGTTGCTTGCGTGA
AGGGCTGCCGCCTGCTTGCGTTCGGCCCGGCAGGCAGGTCAGAAC
Right flanking sequence: Indices 720262 -- 720761
TACGTTGTGGTTGTTGTTGTTGTTGTTGTCGTGGGCTTGAAACTAGATAGCAGGGGTGGGCGTAT
GTACGGGGTTGGATATTAACTGTCATATTCAGAACACTCCGACCGTACAAGGCCTCCGAGAGGCG
TATGTATACAGGGGAATCTTTCTCCGACAACCTGTATGGTTCTATGTGGCCCCACCGGCATCGTA
AACCAACAAAAGGGAGGCGTCTATGGGCCCCTTATAATCGATACCTATAAACCAGGGTAAGCTAC
AGACCCTGTGACGTGTGGCGAGTCGTGCGGCGACATCACCCCCAGCACCCCCCTTGTTCAGTATG
TAACCACCCAGCCAGTGATACATGTGGCGCACCAGGGAACCACTTTCCGTACTGGGGTTGATAAC
AGATCGCGAGTCCTCATATTTGTCGGTGGGGTAGGTTCGGTAGGCGTGTGATAGTTACAGGTTCA
GTAGGCGTATACCGTAACCAATACCATTTCCCGTTGTTCAGTATG
Found at i:720247 original size:24 final size:23
Alignment explanation
Indices: 720214--720275 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 23
720204 CAGGTCAGAA
720214 CTAGTTGTGGTTGTAGTCGTGGT
1 CTAGTTGTGGTTGTAGTCGTGGT
* *
720237 CGTAGTCGTGGTCGTAGTCGTGGT
1 C-TAGTTGTGGTTGTAGTCGTGGT
720261 CTACGTTGTGGTTGT
1 CTA-GTTGTGGTTGT
720276 TGTTGTTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 3 0.09
24 30 0.91
ACGTcount: A:0.08, C:0.13, G:0.39, T:0.40
Consensus pattern (23 bp):
CTAGTTGTGGTTGTAGTCGTGGT
Left flanking sequence: Indices 719714 -- 720213
CCTGGTTTACGCTACATAACCGTTCACGAGCCCGGCACCCGGGCTACCCGGCCGACCAGTTTCCC
TCGTATGCGGGTAGAGGGGCATGCGTGCAGTCCTCGCGTTACACCGGGATCAGCCAACTAACCAA
CTACGTAGACCGTTTATGAGCTATCAGGGTGTGTAAGTGGTGGGGCGCGCGAGTGAGCTGCTTTG
CGAACGGGGAGGGGTTCTATATTACAAAGTAGCCGAGCCAGTGTCACAAGTTACGGGTGTGGGGC
GTTGTACTGGATGAGGAATATGTGTAGGGTGTGGGGTGTTGTACTGGATGAGGAATATGAGGACC
TCACTCATATATAACTGATGCCGGCTACATACGGAGCCTTAGGAGTCAAACAGCATGTGCGTGGG
TTTGTTGCTCTGGCTCGCTAGTTATACGGGAAGTTGCGGTATGCGGGGAACTAGTTGCTTGCGTG
AAGGGCTGCCGCCTGCTTGCGTTCGGCCCGGCAGGCAGGTCAGAA
Right flanking sequence: Indices 720276 -- 720775
TGTTGTTGTTGTTGTCGTGGGCTTGAAACTAGATAGCAGGGGTGGGCGTATGTACGGGGTTGGAT
ATTAACTGTCATATTCAGAACACTCCGACCGTACAAGGCCTCCGAGAGGCGTATGTATACAGGGG
AATCTTTCTCCGACAACCTGTATGGTTCTATGTGGCCCCACCGGCATCGTAAACCAACAAAAGGG
AGGCGTCTATGGGCCCCTTATAATCGATACCTATAAACCAGGGTAAGCTACAGACCCTGTGACGT
GTGGCGAGTCGTGCGGCGACATCACCCCCAGCACCCCCCTTGTTCAGTATGTAACCACCCAGCCA
GTGATACATGTGGCGCACCAGGGAACCACTTTCCGTACTGGGGTTGATAACAGATCGCGAGTCCT
CATATTTGTCGGTGGGGTAGGTTCGGTAGGCGTGTGATAGTTACAGGTTCAGTAGGCGTATACCG
TAACCAATACCATTTCCCGTTGTTCAGTATGTACATAGTACTACC
Found at i:721946 original size:16 final size:16
Alignment explanation
Indices: 721925--721956 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
721915 CTACATGTGT
721925 GAGGGAAGCTTTTTCC
1 GAGGGAAGCTTTTTCC
721941 GAGGGAAGCTTTTTCC
1 GAGGGAAGCTTTTTCC
721957 ATCCAACCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (16 bp):
GAGGGAAGCTTTTTCC
Left flanking sequence: Indices 721425 -- 721924
TCGTCGTTGTTGTTGCTCACTCGCGCGTTTTCGGCGGTGTAGGAGGGCTAGTACGGTTGCGTTAG
TGGCGGCATGAGTTGTTGATCCACCCGGCGTCGTTATATAGCCGCCCGTACTAAGGCTGCTTCCG
GTGTTGTGTTCGTCGAATTATGAGCAGTCTATGTGGTACGGTGTAGACCACTATAGGGGTAGCAA
GTTGGGTTCAATAATAGACGGCATGTTGCTGTCATGGCGTGTTGAGAACTAACAAACTGAGTGGG
CGCGCCCTTTACCGTCTCACTCTATATGGGCAGGGTCTGTTAGTTCACCTACCCACGGTGGGCTA
CTCCTTAGACGCTTCCCTGCTTTCTGTGGCTCCCCCGTACATAGCCGGAACCACGATCTGCTCTC
CTGCCCTGCCTTCTGCGTACAAACCATATAGTATCCGGAGCAACAAACGTTGGTCGTCGCACCGA
GTTGTGGAGTGAGGGAAGCTATCCGGCTGCTAACGCTACATGTGT
Right flanking sequence: Indices 721957 -- 722456
ATCCAACCGCTGACTGCCTGCGGTAACATGGGTTGTGTCGACTCTATGTGTCCCTGAGGGTCTAT
AGTGGAGTGTACTCACCCCCATCCTGTGTGAGGTAAGGGAACTGGCTCCCTGCCTGTCCACATGA
CTCCCTGCCTCAGTACTAAGGGCCACCCCCATGTGCAACATGGTAAGCCATCCCTACATAGGAAC
TAGTTCCCCGAGTGACTGCTCAACATAATGACTTGTGTGTTGTGTGGGTTTCCCACACAAGTCAT
TATGTTGAGGCCTTGGCTGAGTGGCTTAGGGCGCTGAATGGCGGTCGTGCGGGTGTTTGTGGTAG
CTGTGTTGTGTGTATCTGTAGCTCCATGTGTTTCCGAGTGATATGTCTGACCTGTAACGAGTGAG
TGTTATCCTGTGTTGTCTGAGTGAAGGTGTTCCCATGTATCTGTGTATATAGTGTGTCTGCCTGT
GTTGTCTGGTGTCCCCCCTGTCCATCAGACTATTCCTCTGTGTGT
Found at i:726490 original size:36 final size:37
Alignment explanation
Indices: 726443--726530 Score: 124
Period size: 39 Copynumber: 2.4 Consensus size: 37
726433 TTGTCTTTGA
726443 GTAAGCGGCCC-TCTTGGAGTGTACACGCGGGTTCGG
1 GTAAGCGGCCCATCTTGGAGTGTACACGCGGGTTCGG
* **
726479 GTAAGCGGCCCTAGTGTTGGAGTGTACGTGCGGGTTCGG
1 GTAAGCGGCCC-A-TCTTGGAGTGTACACGCGGGTTCGG
726518 GTAAGCGGCCCAT
1 GTAAGCGGCCCAT
726531 ATAGAAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
36 11 0.24
37 1 0.02
38 1 0.02
39 33 0.72
ACGTcount: A:0.15, C:0.23, G:0.40, T:0.23
Consensus pattern (37 bp):
GTAAGCGGCCCATCTTGGAGTGTACACGCGGGTTCGG
Left flanking sequence: Indices 725943 -- 726442
GTGAGCAACTAGTTCCGCGCATCCGTCACTGATCAGGTAGCGCCCCTCTCCCAGCGGTTCGTTAT
GGTTCAGAGACGAGTGCTTCGTACGGTATCGGGGGAGGCCATAACAACACTGCTACCAGGCAGAT
CAGAATGCAACAGTCAATTCATGAGACGCACATTGTCTCGTAGGGTAGATAACGCCTATTACGTG
GCGCCAACAAGCCCCAACAGAGTCAGAGCAGAAACTGGCCCCACACATGACCCTACCCCCTATGG
GGCGGCTTGATACCGAGTCAACAGTGGACAGTTCCCCCTATCACCAGGCGAGTCAGGTATAGTCC
ATATAAAGCAGCTTCTATCTACGGTAGACAGCACGGTGCTTGACGTGTATAGCTGCCACCCTCGC
TGTCATAAAGGCTGCACGTTGGGCGCTTATGAGAGATTACGGCGATTCCAATGACCAGTACTGGG
CCGGCGTACATGCGGTACGATGGTTTACCGACCCCTTGTCTTTGA
Right flanking sequence: Indices 726531 -- 727030
ATAGAAGAATATATCCGCTCCTATGTGGGCGTTTCAGGGAAAGGCAACGTCGGGAACCAACTAGA
GACCCCAGTGCGATGTAGCATTCGCCCGATCACAGAACAACACGACGTGTTGGGAGCAGGTCGCG
TTGGGCTTCATAGTTACCCAAAGTGCCCAATCCGCGCAGTACCTTTCTCGACAACATCGTGTCTA
CAGGCATTTCCATTGCAACCACCGTTACGCACTTCAATGATACAATCTTCAGAGCTGCTTCTTCT
CGAGTAGTGACCAATTAGTTCAAACACCTGCCCACGGGAAACTGGAGCTTTGCAAGTTAGGCTCA
CATGGCCGTTAAGTTGTTCTACAGTCGACGAGCAGAAACACCGATACAATGATGCACAGAACGAA
TAACTCTTAGCCTTCCTTCAGTCTGCGCACCCCCACCCGGGGAACAGCCAGGCCGTGCACCACCT
GCTATATACGTAATAACCGCATTGCCCTTCAGCACGTTCACTCGC
Found at i:730044 original size:27 final size:27
Alignment explanation
Indices: 730012--730065 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
730002 AGGCGTCCCG
730012 CTGAGTTGTAACTACACGGTGGGCGTA
1 CTGAGTTGTAACTACACGGTGGGCGTA
730039 CTGAGTTGTAACTACACGGTGGGCGTA
1 CTGAGTTGTAACTACACGGTGGGCGTA
730066 TGACTGAGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (27 bp):
CTGAGTTGTAACTACACGGTGGGCGTA
Left flanking sequence: Indices 729512 -- 730011
TCCAGCTTTCAGGTCCATGAGCCTTGGGTACCTGATCCAGCCGCCAAGCATGATACGTCGGCTTT
GGGGGAGTGTACAGGTCTCACTTGTTGCGAGTACAAGCAGCCGGTTTACCGGAATGGATATGTGA
AGCACGCCCACCACCACCACCACAACCCCACCTCAATAACTAACTAACGCCGCTACATCCACTAG
AGCGAGTTCGAGTAGCAGAGATCGAGTTACTACCCTCTAGCTGGAACCATTGCCGGGAGCTTTGA
CCGGTTACCTTCGGGCTCTCCCCTCTGGGTGGGTAGGGGGTCCGAAACAAGCTTCCCGGACAGAC
GTAGCCACCTTCCAACGCCTAAGGCCTCTAGTGCCGGAGGGATGCGCCCTCCTACTGTCCGTCGA
GGGTCCGAACAGTATGTTCCGTATATTATCATAACCTATCGCTTTTGATCCGCAACCACAACTAG
TTCTGCCACCGCACATATAACTGGTCGTTGCGCACAGGCGTCCCG
Right flanking sequence: Indices 730066 -- 730565
TGACTGAGCCGGGAGTGAGATACGAAGGCGGTTACCACCCAACGGAGGGTGACTGATTGCGAGAC
CCATAAATAAGCTAATCAACAAATACAACTACCTCAACTACCTCTATACATGGCGGTTGGTGGCG
GTAATAGTCGGAAGGATAGATAGCTATATAGGATAGATAGCAGCTATATATATTATACCCTATAT
CCCAGAAGCATATATATTGACTACATGATTGGCTAGGTGCGGCCTCGCTTATTAGAGTGTCGGCA
AAGGCCATACCCTTCTTTACCATCCTCCCACGAACACACCGCCCACGACAACAGCGTGCTTGTTT
CGAGACAGCGTGCCTCCCACCCACGGAAAAGTCAACACGTTACGCCGGCCAGCCATCTAGCTTGG
ATATGGATCAGGCCTAAAGCAAGCACCGTTTATAAACGTGCTTGGTGCTAGCAGCTGCACAGTTC
CCCTCCCCGGCTATTTCGAATACTTGGGTGGGCGCAACCGCCGTA
Found at i:737101 original size:9 final size:9
Alignment explanation
Indices: 737087--737114 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
737077 ACCATGTATA
737087 GAGGTAGTT
1 GAGGTAGTT
737096 GAGGTAGTT
1 GAGGTAGTT
737105 GAGGTAGTT
1 GAGGTAGTT
737114 G
1 G
737115 TTAGTTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.32
Consensus pattern (9 bp):
GAGGTAGTT
Left flanking sequence: Indices 736587 -- 737086
CAACAGACGAGGAGAACAGACTTTGAGGTGTGGCCCACATAGAGGGGTATTTCGCCAGTGATGTG
ACGCATGTTGGGGCCAGTTGGCGTCGCACGTAGGCTCACTCGCTGCAGTACTAGGGGCGGCGGGC
ACATAACTGCTGGTGGGGCTGTCGGTTGATACAAGTGTCTACATGGGGGAACGAGTTACGTAAAG
TAGCGTGACTACACGAGGGAAGGGGTTGGCTCCTGATACACGTAACCCCGCGCAAGCTCAGTACG
CCCACGTGTGGAACAGATAATCCAATCAGCCAAGCCAGCGTCACATGGGCCCTTAGTTTCCGGTG
TTGGTATTGTTGGATATGTGGCTACATGGAAGCGAACCCATAGACTGCAGCCCTCGTTCCGACCC
CACCCTAATAAGCCGAGCCAGCTCCCATACTGGTATTTGTTTACGAAGTTCCAGCGCCATACCTG
CTGCTTGCCTTGCTTGCTATTGCTAGCTAGCAACCACCATGTATA
Right flanking sequence: Indices 737115 -- 737614
TTAGTTGTTAGTTGGTTGGTTGTTGTTGTTGTTGCCCCTGCACGCGATCCAACCACCTTCCGTAA
CCAATTGAAAGTGGCCCCGGCTACCATCGATCGTCACTGTGCGGAAGTTGGCCCCACCCCACCCC
ACCGTTAACTAACTAACAACTAACTAACCGCGGGCGAGGAAACCAATAAATACAATAGGCGATAT
GTACGCACACCCACCTGAACCGGCTACTGCTTCACCCTGGCTCACACAGTCGTCACGTATGTGGC
AGGGATGCGGGCTATAGTTGCCCATGTAGCCGGCTGGCGGCGATATGTACGCACACCCACCTGAA
CCTGTATCGGCTATACGCCCACCTGAACCTGTGTACGGTGTTCCCGCCTGTAGCGGGACCCGCTA
CGATCAAGTTGGTGGGGCCACTAAAGCGGCTATAGTCTTTGTTGGCTCCAGTCCGTGCAAGCCGA
GCCAGCGTCACATACAAATACCCCTGCTCCGAAGCCTGCTCGCCA
Found at i:742277 original size:39 final size:39
Alignment explanation
Indices: 742223--742300 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
742213 TGCTCGATGG
742223 TGGATTCATCAAATGCGTCATCACATCACCGCCACGCTA
1 TGGATTCATCAAATGCGTCATCACATCACCGCCACGCTA
*
742262 TGGATTCATCAAATGCGTCATCACATCACCGCCCCGCTA
1 TGGATTCATCAAATGCGTCATCACATCACCGCCACGCTA
742301 GTTGGGCAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (39 bp):
TGGATTCATCAAATGCGTCATCACATCACCGCCACGCTA
Left flanking sequence: Indices 741723 -- 742222
TAGCAGCCGTTCAGTATCCCGATGTTACTGTCGTCTGCGTATCGGACCATTTCTACCTCCTCCCT
TCGGGGTTCGAGGTCCATAGAGTTGAGTACGATGCGTACATAGGGTTGGTTGGGGATGGAGCACT
CCCCTGCGGGCGGGATACCTCGGTCTTTGTAGGTAGACGTGTTTACCTTGTTCAATAAAGATGGG
GACGACGGCGAAGCGGGGTTCCATCGGTTAAGTACACCACCCCATATGTACGGAATGTTTCGATC
GGTTTCGTGATGTCGCGATTTCGGGGTTTCGATCTGTTGATCCGCCCTTTTCCACCGGCAGAGGA
GAACGTTTTAACGACGCGGCACGTGCAGGATCCCAGTGTTGGTGGGTCCCCGGCTATGTATTCTG
GTTCTTGTGGCGCTGTAACGCCAGGCCTCCTATGTGCACGGCATTTCCGGTTGGCAGGCGAAGCC
CGCATCTTGGTAAAGATGGCTCCTATTGGAGCAGCTGCTCGATGG
Right flanking sequence: Indices 742301 -- 742800
GTTGGGCAGGGCGGGCGCACATAGAGCAGGAAATGATTTACGACTATGAAGGAGCTAGCCACCTC
AATTGTCGATCGCAAGGGTTATTGAGGTTCGAGGGAACCGTATCTGGAAACGGCCCCCCAACCCC
GGTGTGAAATCGTATCGGGGTATTGTGTATACCACCCACCCGGGCTTATCGCACAACCGTGGTGG
GCCCCCGGCACACAATGCGTACAACCAATACCGGGGATGGTGGGCTTACGTAGGGGGCAAGCACG
AGCCCCAAGCGGCCCCACCTTATATAAATAACGCGGGTGTGGTGTCCAACTTACGTGCACCAACC
CACGGGTGGGGTAATGTGTCTTCGGGGTGAAGCCAACCCAACCGTACTTGTGGTTACCGTACTTG
TGGTTCGAGCCATGCGTATGATCGCACAACCCCATCCTCCGACACTCAGAACCGGTATTGATCAG
CAACCTTGTATATGCTGCCCCGAACTCCAACCGTTGTGGAACCTT
Found at i:742686 original size:15 final size:15
Alignment explanation
Indices: 742666--742695 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
742656 AGCCAACCCA
742666 ACCGTACTTGTGGTT
1 ACCGTACTTGTGGTT
742681 ACCGTACTTGTGGTT
1 ACCGTACTTGTGGTT
742696 CGAGCCATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.27, T:0.40
Consensus pattern (15 bp):
ACCGTACTTGTGGTT
Left flanking sequence: Indices 742166 -- 742665
GCAGGCGAAGCCCGCATCTTGGTAAAGATGGCTCCTATTGGAGCAGCTGCTCGATGGTGGATTCA
TCAAATGCGTCATCACATCACCGCCACGCTATGGATTCATCAAATGCGTCATCACATCACCGCCC
CGCTAGTTGGGCAGGGCGGGCGCACATAGAGCAGGAAATGATTTACGACTATGAAGGAGCTAGCC
ACCTCAATTGTCGATCGCAAGGGTTATTGAGGTTCGAGGGAACCGTATCTGGAAACGGCCCCCCA
ACCCCGGTGTGAAATCGTATCGGGGTATTGTGTATACCACCCACCCGGGCTTATCGCACAACCGT
GGTGGGCCCCCGGCACACAATGCGTACAACCAATACCGGGGATGGTGGGCTTACGTAGGGGGCAA
GCACGAGCCCCAAGCGGCCCCACCTTATATAAATAACGCGGGTGTGGTGTCCAACTTACGTGCAC
CAACCCACGGGTGGGGTAATGTGTCTTCGGGGTGAAGCCAACCCA
Right flanking sequence: Indices 742696 -- 743195
CGAGCCATGCGTATGATCGCACAACCCCATCCTCCGACACTCAGAACCGGTATTGATCAGCAACC
TTGTATATGCTGCCCCGAACTCCAACCGTTGTGGAACCTTCACCTTCCCCGTCAAGGTACTTAGG
CGTATCACAACGGTGTCACGTAGCCTAGCGGGCCCACCCCTACCGTGCTAGTTGCGCGGCCCACC
GTAAACTGCGTACAATGGTTGTACGCAACTGATACAGGGGGTTAACAACTTCAATCCCCTTCGTT
CCGTGGGTGGGTGGTATGTGCCGGTTTGTACGGCTACCGCGAGTTATATACGGTGGGGGGTGTAA
CTAACTACACAACTGATACAATCCCAGTGGGCGAAGCCGCAACTGATACAACCGTGCGGGGGCCG
CGCCACACTACCCCCCCTCCCCGCAACCTGATACTGAACTGAACCGTATAGCCACATAGGGTGCC
GGCTACCGTGCTATATACGGCGAAACTGTGGGTGGGGGGGGTATA
Found at i:745040 original size:23 final size:23
Alignment explanation
Indices: 745010--745055 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
745000 CCGCATATAT
745010 GTACGGGAGGTATGGGGCTAACG
1 GTACGGGAGGTATGGGGCTAACG
745033 GTACGGGAGGTATGGGGCTAACG
1 GTACGGGAGGTATGGGGCTAACG
745056 CTCTTTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.48, T:0.17
Consensus pattern (23 bp):
GTACGGGAGGTATGGGGCTAACG
Left flanking sequence: Indices 744510 -- 745009
CGGGGTAATCGACCTAACCGCTCATGGATGGCATTAACAACGATGGAACTGTGCCGTACGCCCCT
AACCCTTGCTGAAGATGAGGATGAAGCGCCGGATCAAGCATGGCCCATATGACCCTGCTCCCTCA
CTACAATGGAGACAGTGGTAATGATCCCATCCTTCATCTGAAACAACATGAAACATTCTGCCAAG
CCAACTACATAGACAAGTATCGGCAGAAAGTGAGAATTGTTTCCACTGTAGCAACGAGGGTCTGC
TCTTTCATGGTACCCCCACCCCAAATGGTTCCACCTCACATAGTGTCCAACTGGTCTGAGAGTAC
GACGATAAGTACCAACCTGTGGGCCTCATAGAACAAATGAGGGATGAGATTCGTAGCTACTAAGC
AGAAGTCAGTATCGAGGTTTGACCACATGATAGATAGGTACAACCTTCTGCTATCCAGGTGCCCT
TTCCAAGGTTTACCAGAGAGACAGCGCATGTTCCGCCGCATATAT
Right flanking sequence: Indices 745056 -- 745555
CTCTTTGGAATGCAACGTGAAAATACGCCTTTAGACACAACTTGATACTAGCTGGAGGCAGCTCA
ACCTGTCCGCATATGTAGGTCGCGCCAACCACTCATACGTAGTGCCGTACCCGGCCCCTGATACA
AGTGTTTCAGAACTCAACCGTCAAGTAATCGCCCAACATACATACCCGTCAAAGAGCCAATACAA
CCCTCACAGCAGCTATACTAGTATATATGGCGTTAATAGGCGTATATATATGATGAGGCGTGCAC
CAATATCGTAAGCCGCCCGCCAGATCAGATATATGCTGTAGGGTAGGCAATATGCGTAAACAGGT
GAACATGCTACAGACACCCAGAGCCCTCCGTATATACGCGAGTTTAAACAACAACACACTCGGCA
TACGCCGGACCGCAGTAGCGGGGAACACACTCCGAAACCACAACATTCCCCTCGGCTATATCAGT
CACACTACGACCTGCGCAACCAACCTTTCTCTTTCTCGTTTTCCT
Found at i:747340 original size:25 final size:27
Alignment explanation
Indices: 747306--747359 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
747296 TGATGTCATA
747306 ACCTGATG-T-CGGCTATATACGCCGT
1 ACCTGATGCTACGGCTATATACGCCGT
747331 ACCTGATGTCTACGGCTATATACGCCGT
1 ACCTGATG-CTACGGCTATATACGCCGT
747359 A
1 A
747360 TAGGTCGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 8 0.31
27 1 0.04
28 17 0.65
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (27 bp):
ACCTGATGCTACGGCTATATACGCCGT
Left flanking sequence: Indices 746806 -- 747305
GGCAGACGGTAGCTGGGAGGGGTTGTTTACCTGGGTAGGCTAGTTGAGACAAGTAGGCATTGCCC
AAGGCCGTAAACCGCCCAATCGATGATGAAGTGTTCTCCGATCTTTCCGCTGCTCCCATATTGGA
TTACGTACACGAAGACCAGGTTGCCAGCGCAGCAATCTTACACAACCGATACTAGCCGCGGCACA
GGGATCAACCGATAAAAGGCTTACGACCAAGCCCCGTCCGAATTGCTATGCCACACACGGCACCC
GTTATATATGGTTGTTTCCAAGGTGAGCTGTTTCACTCCAGTACGATGCTTTCCCACCCGTTTCG
TTGCTGTGGGCGTAACTACCTGTCCTGTTATTATGGCCAGGCCATCGCAGCAGAAAGGTTGCCTG
TCTTACCAGCGACCATCAGCACTTTGTGGTGGGACTGGCTCTTCCACCTGCGTCAATACCGATGC
ATCCGAATCCTAGTGAAGCAACTAGTTGATTGAATTGATGTCATA
Right flanking sequence: Indices 747360 -- 747859
TAGGTCGCGGTCGCGGCGCGGCGGGTTTATCGTAGTGCAAGTATCCGCTACCCACCGTATATCCT
AATGCGTTAGTGTTGGAAAGTGGTGTGGCTTACCGGAACTGCCTACACGTGAAAAGCGCGGGTAA
GCAGACATGCACGGTACTTCCAGACCCACCCGTTTCGTTGCTGCTGCCGCAGTGGTTGTGAGTGA
TATCGCCACGTTTCGTTTGACGCACGGTGGGGCCCCGACCCGAGACAACGAGCTGCTCAACTCTA
CCGTATAAACAGAACGAGGACCTTTCCAATGTACGTAGATGGTATGACTCACCATATGTGCTATG
TGCTACGCTGTAAATGCCATCAAGTTCAGTATGGTTGCCATCAGTTCAGCGTTGTTGGAGAATGG
GTCACGTGGAACAAGAGCGGATCTACGCGCGCCGAACCCTCTCAATAACCATAACAGTGCCGGTG
GCGAGATCGTTGACAGAAGGAAGGTGCATCAAGCGCAGTTAACCG
Found at i:750589 original size:17 final size:17
Alignment explanation
Indices: 750567--750600 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
750557 CCGTAACCAT
750567 AGTTACATAACAAGGCG
1 AGTTACATAACAAGGCG
750584 AGTTACATAACAAGGCG
1 AGTTACATAACAAGGCG
750601 TTACCAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
AGTTACATAACAAGGCG
Left flanking sequence: Indices 750067 -- 750566
CAATCATCGGATTATGGGGTGGAAGATAGAACATCTTACCTTCGCGTTGTGCAGCGCCTACTTGA
ACGGCGGGTTTCTATATATCGCTGGAGCTGGTTGTCATAACGGGAGGCTCAATGTTGGTAAGTAA
ACCACAGGGCGCCGTACGATGGGGGTTCGGGGGTACCGGCTAGCTCGCGGCGCCTGTCTATGGCT
CAATATGGTTCACTTGATGTCAAAACTATTGGACAGAGGTGGGCGGATTCCTAAGCTTCTTCGAC
ACGTTACACGACAGACACCGGTAGCATGTGCGGGAACGCTTTCCGCCATATGCCCGTGGCAACAA
GCATTCTAACCACCCGACGCACCGGCTACAGGGGGTCCGATGCGTATGCGGGGGGGTAACATCAG
TATGCGATGCGGTGCGCTGCTATTTGTCTCTCTCATCCACATGTGTCAGTGGAGCTTGGGATCCA
ACCACCTGCCCGCCTAGATCCATCAAAGATGCGTACCGTAACCAT
Right flanking sequence: Indices 750601 -- 751100
TTACCAACAAGAGCGAGCCGATCCGAGCCGAGCATATACGGTAGGTACGGTACCGTAGGGGTGAC
CATATTGTTCTATCCCACTCAACAACAACGAGGCGGAGTCCACCAATACTGCGCTTGCTGCCAGC
TGATGCATGTACAAACGCGGCTATTACGAACATAACGAGTATACGGTGGTAGATCGCCGTTACTA
CTGCTCCCCTTTACGACGGGTAACTGCCCTTCCGTTCTACAGGTAAGCATGCCTACTTAGAAGAC
GGGGGGCGGCGTCGACGCGTATTGGGCCCACCATCCCCGGGCCATGGTTGGTAGTTGCCCAGTAC
TGTGTGGGGTTCGCTGATCGAGTAGTTACCTTGGTAGTTGTAGTTGTAGAACGCCGAGCCTGCTT
CGGTTAGTACCTGGTGCACTGTTGACTATCGTAGTTGAAACGGTTTCGTAACCCAACCTAGTACT
AGTACGGGAAGCGATAACGGTTGCTGTCTACCGCTGTCTACAACT
Found at i:751125 original size:3 final size:3
Alignment explanation
Indices: 751119--751145 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
751109 GGCAACAACA
751119 ACG ACG ACG ACG ACG ACG ACG ACG ACG
1 ACG ACG ACG ACG ACG ACG ACG ACG ACG
751146 TAGACCACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
ACG
Left flanking sequence: Indices 750619 -- 751118
CGATCCGAGCCGAGCATATACGGTAGGTACGGTACCGTAGGGGTGACCATATTGTTCTATCCCAC
TCAACAACAACGAGGCGGAGTCCACCAATACTGCGCTTGCTGCCAGCTGATGCATGTACAAACGC
GGCTATTACGAACATAACGAGTATACGGTGGTAGATCGCCGTTACTACTGCTCCCCTTTACGACG
GGTAACTGCCCTTCCGTTCTACAGGTAAGCATGCCTACTTAGAAGACGGGGGGCGGCGTCGACGC
GTATTGGGCCCACCATCCCCGGGCCATGGTTGGTAGTTGCCCAGTACTGTGTGGGGTTCGCTGAT
CGAGTAGTTACCTTGGTAGTTGTAGTTGTAGAACGCCGAGCCTGCTTCGGTTAGTACCTGGTGCA
CTGTTGACTATCGTAGTTGAAACGGTTTCGTAACCCAACCTAGTACTAGTACGGGAAGCGATAAC
GGTTGCTGTCTACCGCTGTCTACAACTCCGGATTGGGCAACAACA
Right flanking sequence: Indices 751146 -- 751645
TAGACCACAACTACAACCACAACGTAGACCACAACGTAGACCACAACTAGTTCTGCCTGCCTGCC
ACTGCCGCCCGCTGATGAGATGAGATGAGATGATGTGGGGTGGGGTGGGGCTTCTACCGAAGAAG
AATGATGTGCCAGATGATGTGCGCCCTGCCGACCGTGGTCAGGTCCGGTAATCCTACGCCTACGC
CTACGTAACCCTTCTGCCGCGTGGTTGGGCCCTTCAGTTCCATGCATCCAACCGCGTGGTTGGGC
CTGAGAGTAGAATAGAACTCCCTAGGCAACTGCCAACGGGATACCTTCGTATCTAGTAACCGGTA
ACCGTGCCGTTCCGTTCCGTTCCGTGCTGCGTACCCCTCTTTATGTGGTACTGCTGCGTACCCCT
TTATGTGGTACTGATAGTACTGTGCTGTGCCGCATTCTGTGTTGCGGAATCAGCGGTTATAGTGA
GAGGCCGAACGCCGACCACTTACGCGCTACGTAACAAACCACTTA
Found at i:751164 original size:12 final size:12
Alignment explanation
Indices: 751143--751192 Score: 75
Period size: 12 Copynumber: 4.2 Consensus size: 12
751133 GACGACGACG
751143 ACGTAGACCACA
1 ACGTAGACCACA
*
751155 AC-TACAACCACA
1 ACGTA-GACCACA
751167 ACGTAGACCACA
1 ACGTAGACCACA
751179 ACGTAGACCACA
1 ACGTAGACCACA
751191 AC
1 AC
751193 TAGTTCTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 2 0.06
12 30 0.88
13 2 0.06
ACGTcount: A:0.44, C:0.36, G:0.12, T:0.08
Consensus pattern (12 bp):
ACGTAGACCACA
Left flanking sequence: Indices 750643 -- 751142
AGGTACGGTACCGTAGGGGTGACCATATTGTTCTATCCCACTCAACAACAACGAGGCGGAGTCCA
CCAATACTGCGCTTGCTGCCAGCTGATGCATGTACAAACGCGGCTATTACGAACATAACGAGTAT
ACGGTGGTAGATCGCCGTTACTACTGCTCCCCTTTACGACGGGTAACTGCCCTTCCGTTCTACAG
GTAAGCATGCCTACTTAGAAGACGGGGGGCGGCGTCGACGCGTATTGGGCCCACCATCCCCGGGC
CATGGTTGGTAGTTGCCCAGTACTGTGTGGGGTTCGCTGATCGAGTAGTTACCTTGGTAGTTGTA
GTTGTAGAACGCCGAGCCTGCTTCGGTTAGTACCTGGTGCACTGTTGACTATCGTAGTTGAAACG
GTTTCGTAACCCAACCTAGTACTAGTACGGGAAGCGATAACGGTTGCTGTCTACCGCTGTCTACA
ACTCCGGATTGGGCAACAACAACGACGACGACGACGACGACGACG
Right flanking sequence: Indices 751193 -- 751692
TAGTTCTGCCTGCCTGCCACTGCCGCCCGCTGATGAGATGAGATGAGATGATGTGGGGTGGGGTG
GGGCTTCTACCGAAGAAGAATGATGTGCCAGATGATGTGCGCCCTGCCGACCGTGGTCAGGTCCG
GTAATCCTACGCCTACGCCTACGTAACCCTTCTGCCGCGTGGTTGGGCCCTTCAGTTCCATGCAT
CCAACCGCGTGGTTGGGCCTGAGAGTAGAATAGAACTCCCTAGGCAACTGCCAACGGGATACCTT
CGTATCTAGTAACCGGTAACCGTGCCGTTCCGTTCCGTTCCGTGCTGCGTACCCCTCTTTATGTG
GTACTGCTGCGTACCCCTTTATGTGGTACTGATAGTACTGTGCTGTGCCGCATTCTGTGTTGCGG
AATCAGCGGTTATAGTGAGAGGCCGAACGCCGACCACTTACGCGCTACGTAACAAACCACTTACA
CAACCACCAACCACCAGTTATTGACGGTGAGGAGCGAGCAAAACC
Found at i:751543 original size:25 final size:27
Alignment explanation
Indices: 751495--751548 Score: 94
Period size: 25 Copynumber: 2.1 Consensus size: 27
751485 TTCCGTTCCG
751495 TGCTGCGTACCCCTCTTTATGTGGTAC
1 TGCTGCGTACCCCTCTTTATGTGGTAC
751522 TGCTGCGTA-CCC-CTTTATGTGGTAC
1 TGCTGCGTACCCCTCTTTATGTGGTAC
751547 TG
1 TG
751549 ATAGTACTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 15 0.56
26 3 0.11
27 9 0.33
ACGTcount: A:0.11, C:0.28, G:0.24, T:0.37
Consensus pattern (27 bp):
TGCTGCGTACCCCTCTTTATGTGGTAC
Left flanking sequence: Indices 750995 -- 751494
TAGTACCTGGTGCACTGTTGACTATCGTAGTTGAAACGGTTTCGTAACCCAACCTAGTACTAGTA
CGGGAAGCGATAACGGTTGCTGTCTACCGCTGTCTACAACTCCGGATTGGGCAACAACAACGACG
ACGACGACGACGACGACGACGTAGACCACAACTACAACCACAACGTAGACCACAACGTAGACCAC
AACTAGTTCTGCCTGCCTGCCACTGCCGCCCGCTGATGAGATGAGATGAGATGATGTGGGGTGGG
GTGGGGCTTCTACCGAAGAAGAATGATGTGCCAGATGATGTGCGCCCTGCCGACCGTGGTCAGGT
CCGGTAATCCTACGCCTACGCCTACGTAACCCTTCTGCCGCGTGGTTGGGCCCTTCAGTTCCATG
CATCCAACCGCGTGGTTGGGCCTGAGAGTAGAATAGAACTCCCTAGGCAACTGCCAACGGGATAC
CTTCGTATCTAGTAACCGGTAACCGTGCCGTTCCGTTCCGTTCCG
Right flanking sequence: Indices 751549 -- 752048
ATAGTACTGTGCTGTGCCGCATTCTGTGTTGCGGAATCAGCGGTTATAGTGAGAGGCCGAACGCC
GACCACTTACGCGCTACGTAACAAACCACTTACACAACCACCAACCACCAGTTATTGACGGTGAG
GAGCGAGCAAAACCATATACCACCTACGTCAATATGGTGGATACGGTGGTGGCGTCCGTTACATA
TATACGGTGGATACGGTGGTGGCGTCCTACGGCTGAATCGCTAACGCATCCCAGAACACGGACGA
CGAGTAACAGGGCCGGCCCCCTCGGCAATCACGCCATAGCAAGTAACTCAATGGCTGGCCAGTGA
AGTGGCAGGGGTGATCGTTATCACTAGTCACCGGTGAAACCAACCGGCCTTACTGGTAACATTGG
AGCTTCCGGCTCGGTAGGGCAATTCATAAAAGGCGTGACGTACCGGGGGTGGAGGGACGACCCAC
GTGTCATTGACCCAGCGAAAGATCGCCCGGCCAGCACAGCGGCTA
Found at i:756211 original size:15 final size:15
Alignment explanation
Indices: 756191--756220 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
756181 AGTTAAAAAC
756191 GATATGTGGGTAGCA
1 GATATGTGGGTAGCA
756206 GATATGTGGGTAGCA
1 GATATGTGGGTAGCA
756221 AGGGGTGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.40, T:0.27
Consensus pattern (15 bp):
GATATGTGGGTAGCA
Left flanking sequence: Indices 755691 -- 756190
TAAAGCAGCGGTTCGTGTACGGTGGGGGAAAGGGATTCGCAACGTTCGACCGTTTACAACTACAA
CGCCCGCATACTCACTGATCACACCCAAGGGAACTGACCTACAGGGGTTCGGGGGGTAGTGTTGG
CACGGCCCCCGTACAACCCTCGGAGCCAGCCATGCATGTGCGGACAAAGCAACCCATACGGATCT
TGTCTTGTGTTGCTGTGCTGTCTTTGTTCGTTTCCGAAAGATTGACCAAGTGCGGGCTCCCCTTC
CATGTGCGGGTAGGGCAAGGCATCCAAGTCCCAGTCCCTCGTGTCGGACCACTTCCGGGGTTCTC
TCGTAACGTCGCCCAAGCCCGGGTTGCGAGTAACGCGGCGAATGAGCGTCCATGCGGGAAACACA
CATAGCCTATCTATGTAGCAAGAATCACACATAGCCAATCAGGATATAGAAGAAGGAAATGGTTG
AGAGATGGTTGTGAGGGCGCAGCGAAGACCAGTATAGTTAAAAAC
Right flanking sequence: Indices 756221 -- 756720
AGGGGTGGAACACGCTAGACTGACGAGGTAAGCAGGCAGTTGTGCTGGCTTACCGGAACATAACA
GCGGGTCCTCCTTGTCTTACCGTTAACACAACGTACGAGGTATCTTGATCTTCGAATGGGTTATC
CGACCGAAGTCCCCAGTAACTCAACAGCATGTGCCGTAATTACCAATTATCTATTACTCTCTGTT
CTACCTCCGCTCAATATAGAATACGAATAATACGAATGAAAACGGAATGAAAACCCACCCTCACG
GTACTTGTCCCTACTTACGTGAGTACCCCTTCCTTGGGCGGGCGGAATGAAAACCCACCCTCGCG
GTACTTGTCCCTACTTACGTGAGTACCCCTTGGGGCGTGTGGTTTCACGACACGAAACTAATGCA
CGGAGCAAGGTGTGGTTCTCCTCTGGTAGAAAGCCGCCCCATCTATCCAGCCTGTCTCTCTCTGT
AAGTAACCGTTACAAGGGCATCTGTCTGTTGACAGTGCTTGACGA
Found at i:757562 original size:7 final size:7
Alignment explanation
Indices: 757550--757584 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
757540 CGTCAATAAC
757550 TGGTGGT
1 TGGTGGT
757557 TGGTGGT
1 TGGTGGT
757564 TGGTGGT
1 TGGTGGT
757571 T-GTGGT
1 TGGTGGT
757577 T-GTGGT
1 TGGTGGT
757583 TG
1 TG
757585 TGGGTGTGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.44
7 15 0.56
ACGTcount: A:0.00, C:0.00, G:0.54, T:0.46
Consensus pattern (7 bp):
TGGTGGT
Left flanking sequence: Indices 757050 -- 757549
GACCCACTCTGGTACCCATAAAACCAGAGCTGCTTTGTTTTCTATATACATAACGCACTGGCTTC
GCCTGGAATTCCTCACTCACTGCAAGGTGGATTAGGATCTTTTATCGGGGCAGAGTGCGGGCCTC
CTCTCCTTCGGTAACATAAGAAGCACGACCAACCAACCATGAGATCGGAAACAACAACTGCATTA
TTGGGGATCTCCATTGTGGCTTTCAGGAGAACTAGAGAGAACTACAACTACAACAATGCCCAAGT
AATGCTGCTAGTCCCGGAATTCCGCCCACTGTCTCCTGTCGCTTGGACCAGAAGGGCAGCCCCAG
GGCAGGTCGTCGGCTTCGTCTCCTCGGTGGGGGTCTTCTGGTGCCCTCGCTCCAAAGCTGCGACG
GTCTAGTCCGAAACACTGCACTACTGCACTTTGTGTCACTTCGTGTAACTTCGTTTCGTTTGTTA
TTTCTGAACTGGACACTCAATCGCTCGCTCCTCACCGTCAATAAC
Right flanking sequence: Indices 757585 -- 758084
TGGGTGTGGCGCTGGTTCTGCGGGTGAACGTGATATATCGCAATACGATGGTTACGTTCTCAATC
CAGTTTCATGGTCTTGCAGTTCTAGTTGGAGTTAGTTGCAGTCGGGAGCGGCTTACCGCGACTGA
GCAGTGCGTTAGATGATAGATGTAGTTGGTTTTTGCCCGTGTGAACTTGATAACTAGAGAAGGTG
CATGCATGTCTTAACTGCCGTGCTCTTCCTACTCATGGACTGAATATATGTTCCGTTTGCTTTGT
ATACTGTGCTAACAACTCTTTATTGACGCAGCACTTTGCATATCAAATACCTTGTTGTAGCGGCC
TCTCTGTTATGCAAGCGAACGCGTAATCGGCACTACATTACAACTCATCTTTCTGCCTTCCGTAA
CTAACCAGTTATGAGAGCGGGCGCAGCCAGTAGCCGGGTAACTGTAACTCACTACCTCCCCCTGT
AGATGCCAGGCGGGAGATGCCCGTTAATCTCCGGTACCAGATGCC
Found at i:757577 original size:6 final size:6
Alignment explanation
Indices: 757552--757593 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
757542 TCAATAACTG
*
757552 GTGGTT GGTGGTT GGTGGTT GTGGTT GTGGTT GTGGGT GTGG
1 GTGGTT -GTGGTT -GTGGTT GTGGTT GTGGTT GTGGTT GTGG
757594 CGCTGGTTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 21 0.62
7 13 0.38
ACGTcount: A:0.00, C:0.00, G:0.57, T:0.43
Consensus pattern (6 bp):
GTGGTT
Left flanking sequence: Indices 757052 -- 757551
CCCACTCTGGTACCCATAAAACCAGAGCTGCTTTGTTTTCTATATACATAACGCACTGGCTTCGC
CTGGAATTCCTCACTCACTGCAAGGTGGATTAGGATCTTTTATCGGGGCAGAGTGCGGGCCTCCT
CTCCTTCGGTAACATAAGAAGCACGACCAACCAACCATGAGATCGGAAACAACAACTGCATTATT
GGGGATCTCCATTGTGGCTTTCAGGAGAACTAGAGAGAACTACAACTACAACAATGCCCAAGTAA
TGCTGCTAGTCCCGGAATTCCGCCCACTGTCTCCTGTCGCTTGGACCAGAAGGGCAGCCCCAGGG
CAGGTCGTCGGCTTCGTCTCCTCGGTGGGGGTCTTCTGGTGCCCTCGCTCCAAAGCTGCGACGGT
CTAGTCCGAAACACTGCACTACTGCACTTTGTGTCACTTCGTGTAACTTCGTTTCGTTTGTTATT
TCTGAACTGGACACTCAATCGCTCGCTCCTCACCGTCAATAACTG
Right flanking sequence: Indices 757594 -- 758093
CGCTGGTTCTGCGGGTGAACGTGATATATCGCAATACGATGGTTACGTTCTCAATCCAGTTTCAT
GGTCTTGCAGTTCTAGTTGGAGTTAGTTGCAGTCGGGAGCGGCTTACCGCGACTGAGCAGTGCGT
TAGATGATAGATGTAGTTGGTTTTTGCCCGTGTGAACTTGATAACTAGAGAAGGTGCATGCATGT
CTTAACTGCCGTGCTCTTCCTACTCATGGACTGAATATATGTTCCGTTTGCTTTGTATACTGTGC
TAACAACTCTTTATTGACGCAGCACTTTGCATATCAAATACCTTGTTGTAGCGGCCTCTCTGTTA
TGCAAGCGAACGCGTAATCGGCACTACATTACAACTCATCTTTCTGCCTTCCGTAACTAACCAGT
TATGAGAGCGGGCGCAGCCAGTAGCCGGGTAACTGTAACTCACTACCTCCCCCTGTAGATGCCAG
GCGGGAGATGCCCGTTAATCTCCGGTACCAGATGCCGGGCAATTT
Found at i:758581 original size:39 final size:39
Alignment explanation
Indices: 758527--758604 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
758517 ACGAACCCTA
758527 CCCCGTTGTTGTTGAGGAAAGTGACGGGACGATCCCAGC
1 CCCCGTTGTTGTTGAGGAAAGTGACGGGACGATCCCAGC
*
758566 CCCCGTTGTTGTTGAGGAAAGTGACGGGACGATTCCAGC
1 CCCCGTTGTTGTTGAGGAAAGTGACGGGACGATCCCAGC
758605 ATCGTTATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.21, C:0.24, G:0.33, T:0.22
Consensus pattern (39 bp):
CCCCGTTGTTGTTGAGGAAAGTGACGGGACGATCCCAGC
Left flanking sequence: Indices 758027 -- 758526
TACCTCCCCCTGTAGATGCCAGGCGGGAGATGCCCGTTAATCTCCGGTACCAGATGCCGGGCAAT
TTCTCTAAAGCCCATCTGCACCGAGCAGGTTCACCCGTTGTACACTGTTGTGGGACAACTATAGC
TAGTCCAAGGTTGACGAGTAACCGTTCCTCTTGCTGGAACTATTTCCCTTACATACGTACTGGAA
CCGTTCTCTTTCTTCCAAGTCTATTGCTTGAATGCTACCGGAATGTCATGTTCGTAAGCTTGGTA
GGATGACCCACTGTTCCTTGGTAAGTAACTCTCTGCGGGAGCACCAGCTGTAGCGGCCTAACCCG
GCACAATCAATCCAAGCTGGGTGGTGGCCTGGACCTCGCTCGCCGATCTGGGTGGGATCTGCTAC
TAATAAGGTTCCCGACTGTGTGATCGTGCACACCTGAAGGGTTCCTCTTTCTATGGTCGCTCTCT
CAGTAAGTCCCCTGAACGCCGGAGCAGTCGGTTCAACGAACCCTA
Right flanking sequence: Indices 758605 -- 759104
ATCGTTATTACTAGGTCGAGGTTGGTGCGACTAGGCCTAACCTACCTAGCCCCCGAACTAGGTAC
CTCATCTCTAGGGTGAACCAACTCTGAAACAGTGGTAGCGGTGCATCCCGCTCTGAGGTCGATGA
CCCAGGAACCCCAGGTGATCGACTTGATCCTAGCGCTCGGTGCTGCGCCTCGTCGTATTCGGGAG
GGATAACCCCGTTCCCGTTATTCGGTGCTGCGCCTCGTCGTATTCGGGATAACCCCGTTCCCGTT
ATATACGGCTGCCGCTACTGGGGTTAGTATGACACTCTTCCGTGGCGTGGGTGGTTCCTCCTGCC
CCATCGAAGCTGGTTCCCCCGATACATACAAGTAAGGAAGAAAGAAAAGACCCGTTCGATACATA
CCAACATCAGTTCATTACTCTCTCTTAATACTGTATAGACTGCTCTCCACATTATGCTCTCCACC
GGGTCGTGCCGGCCCGAACTACCCTTTATGGTTACGTACTCGGAT
Found at i:758876 original size:46 final size:47
Alignment explanation
Indices: 758771--758866 Score: 158
Period size: 50 Copynumber: 2.0 Consensus size: 47
758761 ATCCTAGCGC
758771 TCGGTGCTGCGCCTCGTCGTATTCGGGAGGGATAACCCCGTTCCCGTTAT
1 TCGGTGCTGCGCCTCGTCGTATTC--G-GGGATAACCCCGTTCCCGTTAT
758821 TCGGTGCTGCGCCTCGTCGTATTC-GGGATAACCCCGTTCCCGTTAT
1 TCGGTGCTGCGCCTCGTCGTATTCGGGGATAACCCCGTTCCCGTTAT
758867 ATACGGCTGC
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
46 22 0.48
50 24 0.52
ACGTcount: A:0.11, C:0.31, G:0.28, T:0.29
Consensus pattern (47 bp):
TCGGTGCTGCGCCTCGTCGTATTCGGGGATAACCCCGTTCCCGTTAT
Left flanking sequence: Indices 758271 -- 758770
GTTCGTAAGCTTGGTAGGATGACCCACTGTTCCTTGGTAAGTAACTCTCTGCGGGAGCACCAGCT
GTAGCGGCCTAACCCGGCACAATCAATCCAAGCTGGGTGGTGGCCTGGACCTCGCTCGCCGATCT
GGGTGGGATCTGCTACTAATAAGGTTCCCGACTGTGTGATCGTGCACACCTGAAGGGTTCCTCTT
TCTATGGTCGCTCTCTCAGTAAGTCCCCTGAACGCCGGAGCAGTCGGTTCAACGAACCCTACCCC
GTTGTTGTTGAGGAAAGTGACGGGACGATCCCAGCCCCCGTTGTTGTTGAGGAAAGTGACGGGAC
GATTCCAGCATCGTTATTACTAGGTCGAGGTTGGTGCGACTAGGCCTAACCTACCTAGCCCCCGA
ACTAGGTACCTCATCTCTAGGGTGAACCAACTCTGAAACAGTGGTAGCGGTGCATCCCGCTCTGA
GGTCGATGACCCAGGAACCCCAGGTGATCGACTTGATCCTAGCGC
Right flanking sequence: Indices 758867 -- 759366
ATACGGCTGCCGCTACTGGGGTTAGTATGACACTCTTCCGTGGCGTGGGTGGTTCCTCCTGCCCC
ATCGAAGCTGGTTCCCCCGATACATACAAGTAAGGAAGAAAGAAAAGACCCGTTCGATACATACC
AACATCAGTTCATTACTCTCTCTTAATACTGTATAGACTGCTCTCCACATTATGCTCTCCACCGG
GTCGTGCCGGCCCGAACTACCCTTTATGGTTACGTACTCGGATAGGAGGGTCAAACAAGTGAAGA
TCGATATCCTGCACCGTTACCCTGGTGTTTGACCACCTCGTTGTCTTTCGGTCTGTTTGTGTGAC
CGCGCAGCGCGGCGTATGTACACCCGATCCGGCACTTACTGCTCCTCCTCTATATAGTCGTCGTC
GCGCGCCGCCGCCCGCCCCGCCCGCGTGCGTCGTATGGTATGGTATGGTATGGTATGGTATGGAG
CACGCTTAGGCCACCCGCCTGGCTTGCTTTGGAGACATGGTCTCG
Found at i:759297 original size:5 final size:5
Alignment explanation
Indices: 759289--759319 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
759279 CGCGTGCGTC
759289 GTATG GTATG GTATG GTATG GTATG GTATG G
1 GTATG GTATG GTATG GTATG GTATG GTATG G
759320 AGCACGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.39
Consensus pattern (5 bp):
GTATG
Left flanking sequence: Indices 758789 -- 759288
GTATTCGGGAGGGATAACCCCGTTCCCGTTATTCGGTGCTGCGCCTCGTCGTATTCGGGATAACC
CCGTTCCCGTTATATACGGCTGCCGCTACTGGGGTTAGTATGACACTCTTCCGTGGCGTGGGTGG
TTCCTCCTGCCCCATCGAAGCTGGTTCCCCCGATACATACAAGTAAGGAAGAAAGAAAAGACCCG
TTCGATACATACCAACATCAGTTCATTACTCTCTCTTAATACTGTATAGACTGCTCTCCACATTA
TGCTCTCCACCGGGTCGTGCCGGCCCGAACTACCCTTTATGGTTACGTACTCGGATAGGAGGGTC
AAACAAGTGAAGATCGATATCCTGCACCGTTACCCTGGTGTTTGACCACCTCGTTGTCTTTCGGT
CTGTTTGTGTGACCGCGCAGCGCGGCGTATGTACACCCGATCCGGCACTTACTGCTCCTCCTCTA
TATAGTCGTCGTCGCGCGCCGCCGCCCGCCCCGCCCGCGTGCGTC
Right flanking sequence: Indices 759320 -- 759819
AGCACGCTTAGGCCACCCGCCTGGCTTGCTTTGGAGACATGGTCTCGGCCTGGTGTGTTTGGTTT
ATGCCATCGCCTTCAGACTCGAGGATACGGGTTACGGTTTGCCGAGTGTCGAGCTTGATGGACTT
TCTAGTCAGCTGAGTGACCGTTTCTTACGTAAATGGCGAGCAGGCGTTTATTGAACCCACGAGTT
GATAAGATCACTCGTTCCGCCTTCTATGGAATATTGGGAGCTTGCGCTTCGGCGAATGAACCAAC
TCCTCAGAAGTCACTTTGTGTACGTAGGGGGATATAGTTCGGAGGGGGAGATAGTGATACCATTA
TGAAGGTCTTACTTCTATGGTATAGCTGGGCGCACTCCCTTAGCCGGGACTTGCGGGTAAGCTCG
CACCCACCGTCGAAACCTCATCCTTCGCGAAACATTTCTGCGCGTAAACGGACACCTGAAGCTGA
ACACGAGGGCACAACTGGAGCTGATCATGATAGAGCTTCTCACCC
Found at i:763561 original size:16 final size:16
Alignment explanation
Indices: 763540--763575 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
763530 ATCTATTTTC
*
763540 TGCCATACCCTCCTCA
1 TGCCATACCCTCATCA
763556 TGCCATACCCTCATCA
1 TGCCATACCCTCATCA
763572 TGCC
1 TGCC
763576 CCTCATCACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.19, C:0.47, G:0.08, T:0.25
Consensus pattern (16 bp):
TGCCATACCCTCATCA
Left flanking sequence: Indices 763040 -- 763539
TCCGCTCCTACGTTCGCCTGTTTATAATCCCCGCTTCGCGGCTTCCCCTCCTCAGTGGCCTGGGT
TGGAAGTATCGAAGTGCTATACCTGATCCACTTTCGATGCGGAGAATCGTATGTAACTAGTGCTG
CCCCCTCAATACTAGGGAGCCTAGTACTTGATAACGGCAAGGCCTTCCCCTCGTTGTCTATAGGC
CTCACACCAACGGAGGAGCTACAATAAGTTGGGGTTATCACAAGCCAACTCCCGTCAATCTCATG
TGATCCAAGTAGATCTATGAAGGAAGCCCATCCGCACCTGCCTGGTCCTCCATTCAAACCTGTCC
TGCCGCACCTGCCAACCATCCCCACCCAACTCTCTTGATCTCTCATCAGACCGGCCATCCGAACC
TTCCACCTGCTATCCGGAATGAGTAGACCGGCGTCGGAATACCGACGTTCAGTGGCCCGTCAGTA
AAGACTGCGTCCGCTACCGACATGTACTCATCTAAATCTATTTTC
Right flanking sequence: Indices 763576 -- 764075
CCTCATCACGTCTAAGTAATGATGAAACACTGCGTCAGCAATAGACAGGTCCTCAAGTCTTCTAT
GTTCCGCGATACCGGCTCAGTATATAGATAACCAGTAACCATTGGTCAGGAAAGACTGGCGTCGG
TACTAGACATGTACTCGGAGAATGACCTTATCCACCAACCAGTGATCTTATCCACCAACCAGTGT
TCGGTCAGTCAAGACTGGCATCGGTACTAGACAGGTACTCAAGTCGTACTAGGATGAACAGAGAA
TAGTATATAACCAAACCAGCCAGCGGTTATATAGAGAGGTGATTGGCGCACGCAATGGGGCTGCG
CCAGCAAGTACAAGTGTGCGTTTCCATGAAACGTGTTTCTGGAAGTGTGTGTTGCCCGCCACTAA
CTAACTACGCAACATCGGGAAACTCGCATCCTAGGAGTAGAATAATGCGCTCACTTTGGCGTACC
ACCGTATATTGGGACTTGAATCTCATTCGAATCTATATAGTCCAC
Found at i:763757 original size:20 final size:20
Alignment explanation
Indices: 763732--763769 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
763722 GGAGAATGAC
763732 CTTATCCACCAACCAGTGAT
1 CTTATCCACCAACCAGTGAT
763752 CTTATCCACCAACCAGTG
1 CTTATCCACCAACCAGTG
763770 TTCGGTCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.37, G:0.11, T:0.24
Consensus pattern (20 bp):
CTTATCCACCAACCAGTGAT
Left flanking sequence: Indices 763232 -- 763731
GGCCTCACACCAACGGAGGAGCTACAATAAGTTGGGGTTATCACAAGCCAACTCCCGTCAATCTC
ATGTGATCCAAGTAGATCTATGAAGGAAGCCCATCCGCACCTGCCTGGTCCTCCATTCAAACCTG
TCCTGCCGCACCTGCCAACCATCCCCACCCAACTCTCTTGATCTCTCATCAGACCGGCCATCCGA
ACCTTCCACCTGCTATCCGGAATGAGTAGACCGGCGTCGGAATACCGACGTTCAGTGGCCCGTCA
GTAAAGACTGCGTCCGCTACCGACATGTACTCATCTAAATCTATTTTCTGCCATACCCTCCTCAT
GCCATACCCTCATCATGCCCCTCATCACGTCTAAGTAATGATGAAACACTGCGTCAGCAATAGAC
AGGTCCTCAAGTCTTCTATGTTCCGCGATACCGGCTCAGTATATAGATAACCAGTAACCATTGGT
CAGGAAAGACTGGCGTCGGTACTAGACATGTACTCGGAGAATGAC
Right flanking sequence: Indices 763770 -- 764269
TTCGGTCAGTCAAGACTGGCATCGGTACTAGACAGGTACTCAAGTCGTACTAGGATGAACAGAGA
ATAGTATATAACCAAACCAGCCAGCGGTTATATAGAGAGGTGATTGGCGCACGCAATGGGGCTGC
GCCAGCAAGTACAAGTGTGCGTTTCCATGAAACGTGTTTCTGGAAGTGTGTGTTGCCCGCCACTA
ACTAACTACGCAACATCGGGAAACTCGCATCCTAGGAGTAGAATAATGCGCTCACTTTGGCGTAC
CACCGTATATTGGGACTTGAATCTCATTCGAATCTATATAGTCCACCGTATAGGGGGAATGATAT
GACTTGCAGTAACCTCATTCGATGCTCTGTTCGACTGATGCCAGTATGCGGAGATATATGTTGGA
AGCTAAGCTGGCGGGCTAAGCGGGAGATATGATTGGACTTTCAGAAACCAAATTCCGTCGAAACG
ATCATGTTGTAGTCTGACGGTAAGTGGGCGTAGATCGGAAACAAC
Found at i:765063 original size:51 final size:51
Alignment explanation
Indices: 764987--765090 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
764977 TGCGGAAACC
*
764987 AACAACGTATAGGCAGGGGCAGGCGAAGCGATCTCACGGGGAGCTACTGAA
1 AACAACGTATAGGCAGGGGCAGGCGAAGCGATCTCACGGGGAGCCACTGAA
765038 AACAACGTATAGGCAGGGGCAGGCGAAGCGATCTCACGGGGAGCCACTGAA
1 AACAACGTATAGGCAGGGGCAGGCGAAGCGATCTCACGGGGAGCCACTGAA
765089 AA
1 AA
765091 GGGAGAGAGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.33, C:0.22, G:0.35, T:0.11
Consensus pattern (51 bp):
AACAACGTATAGGCAGGGGCAGGCGAAGCGATCTCACGGGGAGCCACTGAA
Left flanking sequence: Indices 764487 -- 764986
ATATAAAAGATTGTGTGCGTGTGCGGGGATTATATACGGTGAAACGCAACATCAATAGCCGTAAC
TACTCCCCGAGGGACTCGATCGCCTGCTACTTAGTATAGTGTGCACATGGCGAATCGGCCGGGAT
GTGCTGTAACCATAACCATGGGCTTGGCGTAGCTCCGCACAAGCTAGGGTCTTCTGCCTTGCGTC
AATATGGGTCAAGGTGGGCGTTTATGGTTCCTAGGTTGTCGTGAGTAAGGCGCATTGGGAATGTT
ACGTAGGTGAGCTGGTGTAGTGCCCGTAGGAAGCATGGCTATAGGCAGGGGTGGCGAAGCGCCTT
CGGCTTCGGGCAGGTGAGGGCAGGAAGTGTGCTGAGCTGGTGTAGTGGCCCTTCGGCTTCAGGGC
TCTCTACGGCTGGGCTGCTCCCTCCGTCTGCCTGGTTATTTACTGTGTAGTGCGGTGGCGTGGCC
ACTTACTGTAGCCTGGCTTCTAGTGCGAGTGAACTTGCGGAAACC
Right flanking sequence: Indices 765091 -- 765590
GGGAGAGAGCAACCGCTCATATACCCGGAATACGTATGCCGCATAGAGAAAGGCTACTAACTGAT
CGATATGTACTATCAGTTTCGCTTCGAACGGTGAGTTATAAAGCATGCACAGCCACGAGTACAAC
CACGCTTCATATGTACGTACTTGTACTAATAACTCTGTCATGTAAAGAGCGCCCACGCTTCATAT
GGTATGGTTGCGCGTACGGTGACATTGATGCTTGCGAAGCAACACTTAATGTACATATAGGAAGG
TCCGATTTCGTGGATTGTATAGCCGGGTTGGGGGTTGGGCCAGTTACATAGTTCGGGGAAGGAAG
GTGGTAAGACATACTATGTGATGTCTGTCTGGGTGGTTGATCCCTGCGTACAAATGGTGGAATCA
GCCGCTACTACTTAACAGTATCGAGCCACCTGCACCGAATACAGGGTGAAACACGTTGCGGATCG
GCCGGCGGGTTGTGGTGGTGGTGGTGCATCAACCGTGCAACAACC
Found at i:775133 original size:40 final size:40
Alignment explanation
Indices: 775089--775169 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
775079 CGCAACAACA
775089 ACTACGTACGTGCGGGATGGTGGGCGCGTATAGCACATAG
1 ACTACGTACGTGCGGGATGGTGGGCGCGTATAGCACATAG
775129 ACTACGTACGTGCGGGATGGTGGGCGCGTATAGCACATAG
1 ACTACGTACGTGCGGGATGGTGGGCGCGTATAGCACATAG
775169 A
1 A
775170 ATAGTTGTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.20
Consensus pattern (40 bp):
ACTACGTACGTGCGGGATGGTGGGCGCGTATAGCACATAG
Left flanking sequence: Indices 774589 -- 775088
GGAGGCTTGTGTAGTTTGTTATGTCAGCTCCAGAAGGATAAGTTGCATCGGAATCGACTTCGTGT
TCATAATCGCATAAATCCACCCGGTCGGAAATGGGCGGCTCCACCCGCCCCCAAGGAGGGGGGCT
CACGCCGAGGACGGACCTTTCCCACCTCATATGGTTCGAGGCGCAGCGCAGCCAGCGAACTGTGG
GTGGGGGTTGGTTGTACGGGGGTACCCCCTGTTCCGTAGGCTGAACAAGACAGACTCACCGGCTA
TATTGGCCGGACATAGATACTTGCTTGCCCGCGACGAAGCCAACTCCTAACGAACCTGTGCAGCT
CATATCTTGAGATCTTGCGGCCCGCCCTATAGGCTATATTGGCCGGACATAGATACTTGCCTATA
TGCACAGTTAGTACGCATGCTGCAGTGTAGTTACTGCCAACGGGCAAGGTGACGTTACTGGGGGA
ATCGAGCTGTCGCAAGCGGGGGGACGTGGTCGAACCGCAACAACA
Right flanking sequence: Indices 775170 -- 775669
ATAGTTGTATGGTGGGGTGGGTACCCCCGTACAAGGGCAATAAACCCCGTACAACTTGTTCTACT
TAAACAGGATGACAGCGCCAGTAGGTAGTTTCCCTACGGACTGGAAATAACTCCCTCTCCACACA
TTATCGGCAGAGCGAGCACGAGGAGCACTCCAGTCATTGCTGTTACTGACACTACGCAACGCTAC
GTGTGGGAGTTTCCGGGGAGGACCCCACCCGCGCCCGTCGTCGATTTCCTCATTGAATCGCGGGC
ATTGCCACGTGGTTACAAGTACCCTCAAGTGAATCGGCTTTGACTGGGTACTTGTCGAAGTGTCT
GGAAAAGGTACACAAGCACGCGGCGCGATTACTGTCGTATTGGCCGGACCTCCTGAATCTCTTTC
ACAAGCACAATACTAGAAGTACGCCAGACTACGTACTATAGTACTCATTGCCGCTAACGCGTGCC
AGGTAAGGTGGTAGCACAGAAGCGTTAGCGGAAGAGAACCTGAAG
Found at i:776754 original size:5 final size:5
Alignment explanation
Indices: 776744--776793 Score: 100
Period size: 5 Copynumber: 10.0 Consensus size: 5
776734 TAAACCCGCG
776744 GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT
1 GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT GTTAT
776794 ATAAGGTGGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
GTTAT
Left flanking sequence: Indices 776244 -- 776743
GATGCCAATGCAATGTCTCGTGTTGGTTATTCTATGGTATGGTATATATATATACATCAATAATA
CATCAATAGGGGCGGGAGAGCGAAGCGATGTAGTTCCACAAGGAGCCAACTATGCCACGGAGAAG
GTCACGCTAGGGGTAACCGGCACGAACACGGTTGTTTCATTGTTGGTAACAGAAGCCGTATTCGG
GGACATTACCCACCCGGCACCCCGGTAGCACAGCACGTTATGGTTCGCACATTGAGAGTCTTATG
ATACCTGGCATGTTGTGGTTTTGAAATTGACTCCATCTATAGACCAAGAACGGATATAACCTCAC
GTATCGCACTCACAGTAAAGTCGCTTTGTCCCATAGCGGCCACACGTAGCGACCTGGTAGTATCG
CGCCTTGAGCTCTTTGTCGATAGAGGGCCCTGCCGCAGCCACCACCACGCAACACTAAGTAAGAA
CTAGTGAGTCATATAGACCAGGTTGGTAGTAGCGATAAACCCGCG
Right flanking sequence: Indices 776794 -- 777293
ATAAGGTGGGGTGGGGTGGGGTGGGGTGGGCGCCCCACCTCAATAACTCGTGGTGAGAATCCGCA
TGTGGGATTTATTCAATATACACAGGGGCTTCATATGGAGGTTAACAACGACATAGGAGGAAAGC
GAAGTCATCGTTCAGTTTCCTAGATAGTCGGGTCGCAATAGATATATGAGGTAGATACATACATA
GCAGCATATTGATATGAGGTGCTTACCCGTAACCAGGGGGTACCCCCAATACGTATGCGGGGGGA
TAGTAGAAGGCTAGTTCGGGATGCTCGCTAGGCGCGTAGAGTTGGCCGAAGGGTTGGGCAACCAA
GTGGGTGTTGCTGCTTCTATCAGCCGCTTCTATATCGTGATACTGTATATATGTTTCCTGCTTGC
CTACTGGAGGTTGTGGAATGTATAACGGGGTCGAAACGCGCATACACGCGTACTAAGGATAACTC
GATCGGAATCGAACTCGATGCAGAATCGGTGTTTCTACAAGCTAC
Found at i:776806 original size:5 final size:5
Alignment explanation
Indices: 776798--776823 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
776788 TGTTATATAA
776798 GGTGG GGTGG GGTGG GGTGG GGTGG G
1 GGTGG GGTGG GGTGG GGTGG GGTGG G
776824 CGCCCCACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (5 bp):
GGTGG
Left flanking sequence: Indices 776298 -- 776797
CATCAATAATACATCAATAGGGGCGGGAGAGCGAAGCGATGTAGTTCCACAAGGAGCCAACTATG
CCACGGAGAAGGTCACGCTAGGGGTAACCGGCACGAACACGGTTGTTTCATTGTTGGTAACAGAA
GCCGTATTCGGGGACATTACCCACCCGGCACCCCGGTAGCACAGCACGTTATGGTTCGCACATTG
AGAGTCTTATGATACCTGGCATGTTGTGGTTTTGAAATTGACTCCATCTATAGACCAAGAACGGA
TATAACCTCACGTATCGCACTCACAGTAAAGTCGCTTTGTCCCATAGCGGCCACACGTAGCGACC
TGGTAGTATCGCGCCTTGAGCTCTTTGTCGATAGAGGGCCCTGCCGCAGCCACCACCACGCAACA
CTAAGTAAGAACTAGTGAGTCATATAGACCAGGTTGGTAGTAGCGATAAACCCGCGGTTATGTTA
TGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATATAA
Right flanking sequence: Indices 776824 -- 777323
CGCCCCACCTCAATAACTCGTGGTGAGAATCCGCATGTGGGATTTATTCAATATACACAGGGGCT
TCATATGGAGGTTAACAACGACATAGGAGGAAAGCGAAGTCATCGTTCAGTTTCCTAGATAGTCG
GGTCGCAATAGATATATGAGGTAGATACATACATAGCAGCATATTGATATGAGGTGCTTACCCGT
AACCAGGGGGTACCCCCAATACGTATGCGGGGGGATAGTAGAAGGCTAGTTCGGGATGCTCGCTA
GGCGCGTAGAGTTGGCCGAAGGGTTGGGCAACCAAGTGGGTGTTGCTGCTTCTATCAGCCGCTTC
TATATCGTGATACTGTATATATGTTTCCTGCTTGCCTACTGGAGGTTGTGGAATGTATAACGGGG
TCGAAACGCGCATACACGCGTACTAAGGATAACTCGATCGGAATCGAACTCGATGCAGAATCGGT
GTTTCTACAAGCTACCCATCTCTGTGAGTCGGAATGAACCCCGAT
Found at i:778856 original size:15 final size:15
Alignment explanation
Indices: 778836--778865 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
778826 GCGATTTCGA
778836 TCTAACCGTGGATTC
1 TCTAACCGTGGATTC
778851 TCTAACCGTGGATTC
1 TCTAACCGTGGATTC
778866 CCCTGTGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (15 bp):
TCTAACCGTGGATTC
Left flanking sequence: Indices 778336 -- 778835
TGCGACGCATGGGGTGCCACTCAGTTCTGCCGTTCTGATGCTTCCGAATCACGGCGGTCCAGTCC
AGTTGAACCCGGCACCATCGCATTGCATTGCATTGCGTCCGTCCATCCTATATTGACGTCTGGCG
GCATGGAAGCTTCGTAGGGTGGCTGAGCTTCGTAACACAAATCAAAACACCACAAAGCATAGCAG
AGTGATCGGGCATAACTCCTACATAGGGTTGGTAAAACCCAACTGCGACGCGGTGACCCAGTCTA
TGCCGCAACACTACCTAAACGCCGGGCCGAGCTGTGCCCACCTCAATAACGGTCCATTCACAAAC
CAGTCCGTACGAACTGACCATCCAGCGCAACACCAACCACCCTACCCCCGTACATATACATAGTT
CAGGGGTTGGTAGCCAGGAGTTTCGTTGTTCAGTACAACGGATTCCCGTTCTACTCGCCTCCCGT
ACAGTACATTGTTGTATATTGTATTAGTTGTATGGGCGATTTCGA
Right flanking sequence: Indices 778866 -- 779365
CCCTGTGGCACCGGTTACGAAGTTGCAGCCTATGTACTGAGGCAACCGTATAGACTCTCATAGCA
CGCTTATTTAAACCGTAATACGTACGGTTCGATATCGTGAGAAGGGGTATTCGATCCAGCTAGGG
TTACCCCACGGCCACAAAGTTGCGGCTCTCAACCGGCTCACCAGAACCGGTTATATAGATGTGAG
GTGCGGGTGGCAGTTATTGACGTGGTTGGTCACGGTTGGGCTGGGCAATTACCATGTCTCCCGAG
AAATCTCAGTACATATGGCGAAAGGCTCACATATCGAGTGCAGAATGGGATCGGGTGTTACGTAG
GCCTTACCTTGTGCCGCCCAGCTTGACTACGAAATTTCTTTACCATCTATACGTTACGTATGAAC
CACCTCTCTACGTTTATAACCGGTTTAGTCTCGCAAAGCGAACGTGGCGAGCCGGTTCAGGGCCT
CAGTCTATCCCCACGCGCAATCCCCCCAACACGCGAGAATGCGAA
Found at i:780540 original size:14 final size:14
Alignment explanation
Indices: 780521--780548 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
780511 TCGGCTGCCC
780521 CCCTACCCTACATA
1 CCCTACCCTACATA
780535 CCCTACCCTACATA
1 CCCTACCCTACATA
780549 ACAGTGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.50, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCTACCCTACATA
Left flanking sequence: Indices 780021 -- 780520
TACGCCGCCCCCACGTAGGTAGCAGGGTACATTGAGAAGCAAGAAACCACGTTAGTTGACTTCGT
AATTGAACGCCCGAGTAGTGCTGCCCGACTGAGGCGTTGTTGGTCCATTTACAACAAGGTATATG
ATTATTACTCTGTGGATTTCACCCTTCCTGCAACTATTACTTACTGCTCGCTTACGTAACTCCCA
TCTTCATCGTCTCTAGAGGTTGGATAAGAGACTGGTTTTGGGCAGAAACTGATATGGGTTCTTGT
GCCTCGTTACGGTGGCTGTCTGTACAAATGGTGAGTAACTACGATATGCCTCTACCTCTGAAGCG
ATACAACGTGCGTAAGGTGGGTCCGGGTATGGAATTCTATCAGCACTAAGGAATAAGTACTACCC
GAGGTTGCACTAGTTGAGCTAGTGAGTGTTTACCTGCCCAAGTACCTGTATTAGTAGTACAGAAA
GCCGCTGTGTGGTGTGAGATCTCGAAGGGGTATCGTCGGCTGCCC
Right flanking sequence: Indices 780549 -- 781048
ACAGTGTGTGCGAGGCTTGGGAATCCTACACACGAGGTGGTGGAAACGATGTTCACTCCATCCCT
TCTTACACTCCCTGCCGCCTACGTGGGTTGGGTGGATACTGTTAATCACTGATTCGGTGTCCTAC
GAACACGCTGGTCACATGCGAGAACGCGTATCTGGTGTCCAGCTGGGAGGAGGGGAGCGACCCGT
TGGACAGAACCGCATATGAAGGCCCTGTCTACATGCTCTATGGGCGTAACCGTTACTTGGCTGTT
AGTGGTTCCGTAACGTGGTCTCTATCTCCAAGGGTGAGGAAGATCATACGGAATTCTCAATCACC
TACAGGTAGGGGCGGTAACGCCAATCGCCAGTCACGTAGGAACGGCCTATTGTGATCTCTCCCAC
TGTATGGAAACTAGGGTCCCCGATCTGACGTAGTGTTATAAAGGTGGAAATTAGGGCAGAGGCGT
GTCGCTGCTTACAGGTGCGACATTTGTATCTAGTAATCGTTCGTT
Found at i:782149 original size:24 final size:24
Alignment explanation
Indices: 782117--782188 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
782107 CATGGAGGTG
782117 GTCTTCGACCTCGTCTATCCCGTT
1 GTCTTCGACCTCGTCTATCCCGTT
782141 GTCTTCGACCTCGTCTATCCCGTT
1 GTCTTCGACCTCGTCTATCCCGTT
782165 GTCTTCGACCTCGTCTATCCCGTT
1 GTCTTCGACCTCGTCTATCCCGTT
782189 ATGGCGGGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.08, C:0.38, G:0.17, T:0.38
Consensus pattern (24 bp):
GTCTTCGACCTCGTCTATCCCGTT
Left flanking sequence: Indices 781617 -- 782116
GATCCGCTGCGAGCGATGGAGCACATCGTCGGGTAGTACGTACGATGAAATCGCTTCCGGTAACC
GGCTGCCGGCGTTGACCGGTCAGGACACATACAACCCTCAGGGATAGAAGTTGCACCTGCTATCC
TGAAACCCAAGCGACCACTCTCGGCCCATGTGTTTGACTCGCGATCGAGTGCGTTTTCATATGCG
GGGAAATATTTCCCTTGGGTTCCCTATCCCGGCTGCGCCAGTCGTCCCGGACTACCAACTGGGAA
TTGAGGCCGGCAGGGTGCTCCTCTAGGAACGATATGTTGTACCCGGCATGTTTGTAACAAGAGCG
TGTAGACAGGTGGCGCCGCCAGCCCAGCATACGCGCACGTGGTAGAGCATCGCCGCCATATATAT
GCCGTGTACCTAAGCCATGATGACGTAATTGGTATACCTAGTGACGGGTAGGTACCGGCAGGTCT
CAGATGTATCGGCGCGTAATTCCAAAGGCTCCCGGCATGGAGGTG
Right flanking sequence: Indices 782189 -- 782688
ATGGCGGGATGTTAATTACCAAAGGGCCCTTCACCGCAACAACTCTTGGACATTTGATTCAGAAA
TGTCGGATCATTCTCACGGATTCCGTCCTCGGCGTAGCTGCCATACGGTGTTTGTGCCGGCTGGG
GGAATGCTCTGAACTATCTAGCCTGTTGTTGTTAGACGTAAGTCGACGGTTATATATCGATACCT
CACGATATGTATCAGAAAACCCAGAGGTCTATGTCTATCTCGCCCACTGTGTCGCAATGTGCGCG
AAAGCGGTTGTTCTACGCCTATATGCCGACAAGGAAGGGAATGAGTTGTTTACCTGTCTCGAAGT
GGTTCGTATACAGGGAGGTACAGGGAGGAAGAATTTATCCGATATTGATGAACATTTCTCTTGAT
ACTAAAGACCGTGCCAATGAGGGACCATACGTAACCCATATATATTACGCTGATGATGCTTGGAC
TTAGTGAGGGTGAGAAGGCTCTTGACTACGATAAACTTAGTTCTG
Found at i:783188 original size:16 final size:16
Alignment explanation
Indices: 783167--783214 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
783157 GTGTGTTAAC
783167 GGTCATCTACGACTGG
1 GGTCATCTACGACTGG
**
783183 GGTCATCTACGA-TAAC
1 GGTCATCTACGACT-GG
783199 GGTCATCTACGACTGG
1 GGTCATCTACGACTGG
783215 TTTCTCGGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.04
16 24 0.92
17 1 0.04
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (16 bp):
GGTCATCTACGACTGG
Left flanking sequence: Indices 782667 -- 783166
GACTACGATAAACTTAGTTCTGACCTCGGTCTTTGAAGTCGCCAAGAACTACCATGTAGTTGGGT
GCAGCCGTACGTAACAAACGGTCTCAACGTGTCGCTTAGTACCATTGTACGGTAGGGTAGGGTAG
GGCTCACGGTTACGATGTTGCGTTGAGCATCAACGCGCACAGGGCAGGGTGGTAACATCCCTTCC
TTACCTGCGAGTGAGAAGCCGGTGGCAAGCCAAGTACGTGAGTGAAGGGTATATACGGATAGTTG
ATATACACGCAGGTAAAGCGATTCTGGATCGGGTATGTGTACAGGGCGTATATCGTGTTATGCGC
GGCGTTATATAACGGTAGGGGTAGGTGTGCCGGGTGATTGCGTTTCGTACGAAGCCTACATGGTG
GTTGGTTGGTTGGACTGGCCTGGGATAGTTACCTGAAGGGTAGCGGGAGGTGTGGGTAGAGCTCG
GCTTCGTGCCTATATTCGGGGCGCAACTCTATGCGGTGTGTTAAC
Right flanking sequence: Indices 783215 -- 783714
TTTCTCGGGCTTATATGGAATGGCATATGGCGGAGCCGCGTGCTCGACGTGCGGCCCATCGTGAG
TGTGCGTGTGACGGATGTGGGTTCGGAGGAAACGGCTCGCATCGTTTATGTCCTACCTTGCCAAC
AATATCAGAACTATATACTCAGACGGGATTGTAAAGGAGTTGAAAGTCATGGTGAAGGTGCCGTT
CTGACGCGAGTATCTATGTAGTTCAAGGCCCGGCAATCCCGTGAATGGATCTCTCTGGTTACATG
CGACCTGTAAGGGAATACTTGGTAATGTCGCTTCCTTGATAGCAGGAAACAGCGTTTCGTCAATA
GGCGGGTGCGCCATCACAACAGATATAAACGTGATAGTCATGCCCAACGTTCAGAAATGCCCCCA
CATCACATCACATATATAACTACTGCTGGCGTGAGCCCCGTAACTTCGGTGGTTCTGTATGGCTC
TACCATGGTGTGAATGTGCCTAGCTCGCGGTAGCAGTCTGTCGGA
Found at i:786634 original size:28 final size:28
Alignment explanation
Indices: 786602--786657 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
786592 ACCCCAGGGT
786602 GATGAGCGTCACAGACTTCTATGTTGTG
1 GATGAGCGTCACAGACTTCTATGTTGTG
786630 GATGAGCGTCACAGACTTCTATGTTGTG
1 GATGAGCGTCACAGACTTCTATGTTGTG
786658 TTTATCCCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (28 bp):
GATGAGCGTCACAGACTTCTATGTTGTG
Left flanking sequence: Indices 786102 -- 786601
AGACAGCGTTACGCCCCACCTCAATAACGTAACGGTGGCAGGAGATTTCTGTTTGGAAAACAAGA
GGATGCAGGAGATCATCGCTGCGGCACGGCACGGCACCGGCACTGGGTGGGGGGGTTCAGTGTTT
CAGAAAGGGGACAGACATCTGTGCTTCCGCAGAGACTCAGGCTTCCAGTGACTCCCCTCCATCAC
ATAAAACCTTGAGTTGGAAGCCTTATAAGCCGTGGTAACCGCCTCTACAGTTGTGGGTGGGGTTC
CTCCCTTCCTGCTTACGGAGGCGTATGTGCCTTCCTGAACGTGCACAACTGCCTGATTGACTCAG
GGGCTTCCGCCAACATCCTTCCGAAGGAGGTAGCCCGTCAGTTGAATCGTTCTCCTTCCTATATA
CGCAAGACAGTGGTTCAGTTATGCAGCACGAACGTCAAGGTGCATATCCTTCATATAGTTGTTTG
TTGCTCAAGGATGAACAAGTGCGCGTTGGCATCAGACCCCAGGGT
Right flanking sequence: Indices 786658 -- 787157
TTTATCCCTGCAGTGTACTACGCTCTTCTGAGTATAAGCTGGGCTGCTTCTATATACACGCAACT
ATCTTCTCAGACTACGGAACACATGTGGCTGCCTTGGAAGGGCGTCCCCAATCAGATCCGCGTAG
AGCGAGAGCCGCACCGTGCAGTAACATGTTACCGCTTACGGAGAAGATAAATCCAACCCGGGAGA
GCCTGTCATATTGAACTGGCATTGGGACTTACGAATGCAACATCAAGGAGAACAAAGAGCATGAA
GAGCAGGAGGAGGCTTCCTTGTCCCCTGCTTCCAACGAGGGCACTTGGTCCATCTTCTTTGATGG
GGCAACCAATTACTTGGAAGAGGTGCTGGGGTTGTTCTTCAGACTCCTGACGGGCATCTCATGTT
GTGCGGTTACAGGTTGGAGTTCGAAGCCAACTAGAAAGCAGCCGAGTATGAGGCCCAACGCCGAG
TCGATTAATTGGCTCGTTATATGGGGTGAAGTGGCGTCCAGATTT
Found at i:787790 original size:14 final size:14
Alignment explanation
Indices: 787773--787800 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
787763 CTCCGAGGCT
787773 CCACAGTAAACCGC
1 CCACAGTAAACCGC
787787 CCACAGTAAACCGC
1 CCACAGTAAACCGC
787801 ACGAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.43, G:0.14, T:0.07
Consensus pattern (14 bp):
CCACAGTAAACCGC
Left flanking sequence: Indices 787273 -- 787772
CAGAGGTTGAGTTATTGATCTACTCAGCCAGTAAGCCTACATGGTCTGTCACCCAGATTTATAGA
GCGTTCAATTCCCTAGCAGCCGTATCCCGGGGGGTACCCTGCCCCTACGTACGTACGCCACCCAC
CGACACATCAGTAATATACTCGTGGCAGCTTCAGCAGCCAATGGCAGTCCCGTCAATGATCCAAC
AGTGGAAGGGCGGCGGGCGACTCACTCAATCGCTCGCTCCTCACCGTCAATAACTGGTGGTTGGT
GGTTGTGTAAGTGGTTGTGGTTCCCCTCTACTTGAACTCAGTTCCAGCGTATAGTATTATATATG
GTGAGAGACCGACCTTCAGGTGGTTGATGGAAATGATCAGTATCATTGCACCACCATACCCTACG
TATATATAACTGGAATCAGGATTAGTTCGAGAAGCAACTCATTGATACTGAAGAGGAAACAGAAG
AAGATGGTGACTTCACTCAGGATGGAGTTATCCAGCTCCGAGGCT
Right flanking sequence: Indices 787801 -- 788300
ACGAAATATTGAGAACGATTTGTTGTTTGATCCTTCGTAAGAACGATACTTTCCCCATTTGTGCA
GTGATGAAGATGTAGAGGAAGTCAACCTAGGCTCTCCTCAGGATCCGTCGATCATCAAGGTTGGG
AAAGCCTGCACTCCCAAGTATCGAGAGGCTGTTATTGCGTTATGCACCGAGTTCAAGGATGTGTT
TGCTTGGAGAACTGAGGACCTGTGCCTATGTAGCCCCAACTAACTGACGCATACTATGGAATACT
CGGTTTTGTATCAAGCCCTTCCGCCAGAAGCAGAGGAGAGTGAATCCGGTTCTAGAGCCGCTCAT
CAAGAAGGAGGTAGAAAAGAACCTCCAGGCAGGCATTATCTACCCAGCAGTGGGGCACACCACCT
GGATTGCCAACCTAGTCCCAGTAAGATGCGGCTTGATGGGGAGATTCGCTTGTGTGTATATTTCG
CCAACCTGAACAAGGCTTCCATGTTGGACAACTATCCTACTCCCA
Found at i:788464 original size:19 final size:19
Alignment explanation
Indices: 788440--788478 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
788430 CATATGCATA
*
788440 CAAGCGGATGTCCTTGGCC
1 CAAGCGGATGGCCTTGGCC
788459 CAAGCGGATGGCCTTGGCC
1 CAAGCGGATGGCCTTGGCC
788478 C
1 C
788479 TCATGTTCGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.18
Consensus pattern (19 bp):
CAAGCGGATGGCCTTGGCC
Left flanking sequence: Indices 787940 -- 788439
ACTCCCAAGTATCGAGAGGCTGTTATTGCGTTATGCACCGAGTTCAAGGATGTGTTTGCTTGGAG
AACTGAGGACCTGTGCCTATGTAGCCCCAACTAACTGACGCATACTATGGAATACTCGGTTTTGT
ATCAAGCCCTTCCGCCAGAAGCAGAGGAGAGTGAATCCGGTTCTAGAGCCGCTCATCAAGAAGGA
GGTAGAAAAGAACCTCCAGGCAGGCATTATCTACCCAGCAGTGGGGCACACCACCTGGATTGCCA
ACCTAGTCCCAGTAAGATGCGGCTTGATGGGGAGATTCGCTTGTGTGTATATTTCGCCAACCTGA
ACAAGGCTTCCATGTTGGACAACTATCCTACTCCCACTATTGACGAGATCCTGGTTTCGGTAGCA
GGCGCGAACATGTTTTCAGTACGTTTTCAGGCCGTATACTATGTTACGTATATGGTACAGGTAGC
TCACTTGATCAACCGCCTTCACTACCAAGTGGGAACATATGCATA
Right flanking sequence: Indices 788479 -- 788978
TCATGTTCGCCGGGGCTACTGTATCAGCGTGCTATGGAGCATACCGGCAGTAGGCTTGATAGGCC
AGTGTGTGGTGGTATACGGCTGATGACATCACGGTTTACTCACTCACTCACTCACCACACCCCCA
TCATAACTACTAGTTGTTGTTGTTGGGCTGACCACGTTGCAGATCTCCATGTTCCTGCGCTTCCG
AAAGTGCCGGGGTTTCCCTCAATCCCTTTCCCTCAATCCCAAATTAAGTATATACGCTGTGACTT
CGGAGAAGCTTCTGGGCTACCAAGTAAATGATCAAGGGATGGGTTTAGATCCATATAGGGTCCAG
GTTATGATGAAAATCTATCTTCCCGGCTCCCGTCTATATACGTAGTTCATTCCTTGTTTCGATGA
CGTGGTGTTCGAATAAAACTCCCAGGTAAAGCAGAGATCGTGGCTCCCATCATGCCACTCTAAGG
ATGCTCCGGCACGTCCGGACCCCGTAACTTCAGCATGTAGTTGCG
Found at i:788705 original size:14 final size:14
Alignment explanation
Indices: 788686--788713 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
788676 AGTGCCGGGG
788686 TTTCCCTCAATCCC
1 TTTCCCTCAATCCC
788700 TTTCCCTCAATCCC
1 TTTCCCTCAATCCC
788714 AAATTAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.50, G:0.00, T:0.36
Consensus pattern (14 bp):
TTTCCCTCAATCCC
Left flanking sequence: Indices 788186 -- 788685
CACCTGGATTGCCAACCTAGTCCCAGTAAGATGCGGCTTGATGGGGAGATTCGCTTGTGTGTATA
TTTCGCCAACCTGAACAAGGCTTCCATGTTGGACAACTATCCTACTCCCACTATTGACGAGATCC
TGGTTTCGGTAGCAGGCGCGAACATGTTTTCAGTACGTTTTCAGGCCGTATACTATGTTACGTAT
ATGGTACAGGTAGCTCACTTGATCAACCGCCTTCACTACCAAGTGGGAACATATGCATACAAGCG
GATGTCCTTGGCCCAAGCGGATGGCCTTGGCCCTCATGTTCGCCGGGGCTACTGTATCAGCGTGC
TATGGAGCATACCGGCAGTAGGCTTGATAGGCCAGTGTGTGGTGGTATACGGCTGATGACATCAC
GGTTTACTCACTCACTCACTCACCACACCCCCATCATAACTACTAGTTGTTGTTGTTGGGCTGAC
CACGTTGCAGATCTCCATGTTCCTGCGCTTCCGAAAGTGCCGGGG
Right flanking sequence: Indices 788714 -- 789213
AAATTAAGTATATACGCTGTGACTTCGGAGAAGCTTCTGGGCTACCAAGTAAATGATCAAGGGAT
GGGTTTAGATCCATATAGGGTCCAGGTTATGATGAAAATCTATCTTCCCGGCTCCCGTCTATATA
CGTAGTTCATTCCTTGTTTCGATGACGTGGTGTTCGAATAAAACTCCCAGGTAAAGCAGAGATCG
TGGCTCCCATCATGCCACTCTAAGGATGCTCCGGCACGTCCGGACCCCGTAACTTCAGCATGTAG
TTGCGTTCGAACTGAAACAGAAAGCAATTGCCTCCGCTCCCACCCAGGTTAGTGAGCCCAGTTTA
TGAGTTGGACTTCTACACACATATGCATGTGCATCAGACACCGGAGCAGCAGCTGTCCTGATCTT
GAGGCAGGACTTGGGGAGTGCCCCGTCTCCTTCATGAGTGAGGAGTTGTTGGATGCAGAGCTCGA
CTATCATTATCTGGAGAAGCAGGCACTCGCTCTCGTATTGAGCGT
Found at i:790670 original size:17 final size:17
Alignment explanation
Indices: 790648--790681 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
790638 GTTGCATTTC
790648 TACGTGATACTGCCTAT
1 TACGTGATACTGCCTAT
790665 TACGTGATACTGCCTAT
1 TACGTGATACTGCCTAT
790682 ACCAGCTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (17 bp):
TACGTGATACTGCCTAT
Left flanking sequence: Indices 790148 -- 790647
TTACGTCTTACGACAAGGTGCCGAGCTACGAACGCTTCAACATTTCGAATGTGCCGTGTTGATAC
CGACGCCGCGTGACGTTAATAATCTAATGACATGTTACGCGATGAGCAGCTGCTCTCTATATAAC
CCCGGGTGGATGCTGGAAGGTGAACAATGGGAGGAAGAAATATACGTATATGAACTATATAACCA
CAACCACTCCGTTGACTGACGAAGGTGAAGCTGCAACCTTCCGGCACCGCTCTGGGAGGGCCTCT
ACTCTAGGCTAAGCGAAAGCGAAGCCCGCCACCCGTCGCTTGGGAGGGAGAATCTCACGGGTAGA
GGCGCGTCACCAATACCAATAGTCGAGGTACGTAGGATCGACCGGTATAATAATGGCTCAACCAA
CTACCGTAAACCCACCGCAAACCACCTCGAGCTGGCAGATGGGACCAACCAGTTAGAGGAAGAAA
AGCGTAGCAAGTGGAGGGAGGAACTAGTTATGTTGGTTGCATTTC
Right flanking sequence: Indices 790682 -- 791181
ACCAGCTTGTAGCCTATATGAACCTGGCAATAACCGAAAAGAGCTTACTATCCACTGAACCCCCA
TCGGTAGGAAAGAGCACCCTCCCTCCCAAAGCCTCGAATGAGAGAGGTGAGTAGAGGCGGCGGGG
TCCCGAACCCGAAGGAGTGATCCATCGGCCCGTCGTATCAGCAGGCGGCGTATACTGATCGATAA
GCTCGACTCGACCACAACGGGTATATGATATGGGGGGCCCCACCGTACGTCAATAACGAGGTTTC
GTAATAGAACAAGGTTATACAAAGAGAGATATAGAGGAATGACCGGCTATATCAGAGCAGTAGCG
AGAGCTGCTAAAGTGACAACTATAGGACCCACCCAAGTCACACGTTATATTATATATGGGCTGTG
CACTCACTCAAGCTGACGGGCCGGTCTCCTCATATGGTTGTTGAGCGTGCGGCGATACTTGGCTG
CTGCGCTGGGTAGCGGAAGTCCCAGATAGCCAAGCCGGTTCCCGT
Found at i:793252 original size:21 final size:21
Alignment explanation
Indices: 793226--793266 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
793216 GAGCATCCTT
793226 GCTGCTGGTCACTCAGGGATC
1 GCTGCTGGTCACTCAGGGATC
*
793247 GCTGCTGGTCACTTAGGGAT
1 GCTGCTGGTCACTCAGGGAT
793267 GACTAACGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.34, T:0.27
Consensus pattern (21 bp):
GCTGCTGGTCACTCAGGGATC
Left flanking sequence: Indices 792726 -- 793225
GCGGCTCAAGCCCTCCAGACGGCTGGTGGTACGTCGATCCAACAGAAAGCAGCTATACAGTGGCT
GCATCCTATAACGTACACTAGAGGCCCCCGCGGAAGAACGCTACCAGTGATTCTCCGCTTTAGCC
TGAACGACCGACGCAATGCAACCGCAAGTATCGGTAGCTGAGTCTCACCACCGGCAAGTCTGATC
GGAATGACCAAAGGACGTAGCCACATGCTGACTCAAAGCGCTCGGATCGAGAACGATAACCACCA
TCCGCTTGGCCTGGCTACATATGCTTTGCCCAGTCGATCGGAACAATAACAGCCATTACCCGGCC
CTAGCTAATTGGCCTAACCGCCTGCTGCTGCTTTAGCTTTATGTGATCACCATTCCATACACCGC
CCAACCGCCTGCTGCTGGAGCACATGAAGCACACATGAAGCGTTACCGGGGATGGGAAAGGTTCT
CCGTTCTGCCCGTTATAATAAAGCACAAGGAGAATGAGCATCCTT
Right flanking sequence: Indices 793267 -- 793766
GACTAACGGAGGAAGCGCACAGAAGCGCACTGTTGGAATAGCCGGCCTAGGAAATGTTACTAGCG
ATTGGCAGATCTCGGTGCGGAAAGCCAGGGAAGCTAGCGTCGTTACTATGAACAGTAAAGCTATA
GCGTTATCCCCGGGTCATCTGCTTCAGGTCGGTCCAATCATGAAACAACTGCCCTTAGCCACGCC
ACGCATGCATATACCACGCATGCATATAAGTAATTAGAAATGCTGCCTCATCAAGCCACTTCAAA
CGCCGTGTTCCTTATGTCAGATACTAGTCAAGCTATTTACGACAAATGTGCGGTTACCGATTACC
TAGTCCTGCGCGCATCCCCCCACCCCAGTTGAGTATCAACGCGCACCGCATATATCGATCAGCTT
ATTTCCACCACCTTCGGCCTCACAAATACATGTTTCGCACACCGCCGGAGAACATTGATATGCCC
GCCCTCGTGTTACCGGTAAAGGGGGCCGCCTAGCAGTGTCTTAGT
Found at i:793480 original size:15 final size:15
Alignment explanation
Indices: 793460--793489 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
793450 CTTAGCCACG
793460 CCACGCATGCATATA
1 CCACGCATGCATATA
793475 CCACGCATGCATATA
1 CCACGCATGCATATA
793490 AGTAATTAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.13, T:0.20
Consensus pattern (15 bp):
CCACGCATGCATATA
Left flanking sequence: Indices 792960 -- 793459
GCTCGGATCGAGAACGATAACCACCATCCGCTTGGCCTGGCTACATATGCTTTGCCCAGTCGATC
GGAACAATAACAGCCATTACCCGGCCCTAGCTAATTGGCCTAACCGCCTGCTGCTGCTTTAGCTT
TATGTGATCACCATTCCATACACCGCCCAACCGCCTGCTGCTGGAGCACATGAAGCACACATGAA
GCGTTACCGGGGATGGGAAAGGTTCTCCGTTCTGCCCGTTATAATAAAGCACAAGGAGAATGAGC
ATCCTTGCTGCTGGTCACTCAGGGATCGCTGCTGGTCACTTAGGGATGACTAACGGAGGAAGCGC
ACAGAAGCGCACTGTTGGAATAGCCGGCCTAGGAAATGTTACTAGCGATTGGCAGATCTCGGTGC
GGAAAGCCAGGGAAGCTAGCGTCGTTACTATGAACAGTAAAGCTATAGCGTTATCCCCGGGTCAT
CTGCTTCAGGTCGGTCCAATCATGAAACAACTGCCCTTAGCCACG
Right flanking sequence: Indices 793490 -- 793989
AGTAATTAGAAATGCTGCCTCATCAAGCCACTTCAAACGCCGTGTTCCTTATGTCAGATACTAGT
CAAGCTATTTACGACAAATGTGCGGTTACCGATTACCTAGTCCTGCGCGCATCCCCCCACCCCAG
TTGAGTATCAACGCGCACCGCATATATCGATCAGCTTATTTCCACCACCTTCGGCCTCACAAATA
CATGTTTCGCACACCGCCGGAGAACATTGATATGCCCGCCCTCGTGTTACCGGTAAAGGGGGCCG
CCTAGCAGTGTCTTAGTCGCCCCTACGGAAGCTCTACTCTAAGATACGTTATCATGACCGGAGCT
GGAACAGCGACCTCAAGTAACGGACAACGGATATGCTCCTGAGTGTTCTGTTATTGTAGCTATAT
GAAGGTAACGGAATTAGATGGCACCCACGTAACGTACCCTCCTTTGTCTTGTTGTACTTTGTTGC
GCTCAACACTCGGCATATTACTCTCGTTATACGACGTTATCCCCC
Found at i:796891 original size:35 final size:36
Alignment explanation
Indices: 796852--796922 Score: 99
Period size: 39 Copynumber: 1.9 Consensus size: 36
796842 CGTTACGTAC
*
796852 GACGCCGCCCCCC-ACGGCATTCACAACATCATGTA
1 GACGCCGCCCCCCAACAGCATTCACAACATCATGTA
796887 GACGCCGCCCCCCGAATACAGCATTCACAACATCAT
1 GACGCCGCCCCCC--A-ACAGCATTCACAACATCAT
796923 CAGTGTTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 13 0.42
39 18 0.58
ACGTcount: A:0.28, C:0.42, G:0.15, T:0.14
Consensus pattern (36 bp):
GACGCCGCCCCCCAACAGCATTCACAACATCATGTA
Left flanking sequence: Indices 796352 -- 796851
ACGACGAACCATTGAGGCGGTCCGTCCATTCGAGCGTAACATGCGGACGATACGGTTAGTATCGC
TTTGTTCTCGCGCCAGGTACCACGCGAGAACGACTTCACAAACGCCGGCGGTAAGTCGCTCGAGC
CTTGACTACGAACAGTCATGACTATGGAAACAGCAGCGGGGAGAGCCCGCACCGTTCCGAGGCCT
GGCCTCCGGCATATGGAGGGAGTGGAAGAGAATCCTCTGGAGGGGAGTGGAGGGATGCGATTGCC
AAGGTTCAGAAAGAGGCTCGCATGGGCCCGACCCGAGGGATCGACTGCCGTTGCCTAGCAAGTTC
CATAGCGTGTTCGATTTTGGAACGGTTACCACCCGTGTTACATAAGCACCAACACAATTGCCGGT
TTATGGACAACGCGCGGTGAACCGGTGAACCGCAACAACTACCAACTACCTTACTATATAGGCCC
CCCACCCCAGTAGTTGCCCCGAACACGAAGTGCCCCGTTACGTAC
Right flanking sequence: Indices 796923 -- 797422
CAGTGTTGCATTGCCCCTCCGTCGGCAACCAACTCCTTCGTTGGCGTGCATTGGGGGATTTATCG
AATCTATCGCAGTGTTACAGTGAAAGCAGGTAACAAGTATGACGATACTCGAGTAGTTATACCTT
GATACTGTGTTGCGAGCACCTTCAAACACTGTTACAAGACAAGGAGGCGGGTAAGTGGAGGCCTT
CCTTTTCTGGTTTGTGCGGTTTCCGCGCTTGTTACGGTACGATGTGAACTTGGCCGTTACAAAAA
TGGATTAGCACTAAGTTATCCTTATCCCATAATGGTTTCCTCCATCCAGATAGAGGATTGGGATA
AGTGCTATATGAATACGAAGGAATCAGATATAGAATGCTTCTCCCCATTCTCCGTGAGCCACTTA
TTTCGTAGTAACGGGATATAGATATAGTTGTGATTTGATTCTTCCTCCCCTGGTTGTGGGCGGCG
TCACACCACTGGGATACTTCGAATAAACTAGAGTACATATAGGAT
Found at i:802741 original size:16 final size:16
Alignment explanation
Indices: 802720--802751 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
802710 CATTCTATTC
802720 TATAGCAGCGTTAGGG
1 TATAGCAGCGTTAGGG
802736 TATAGCAGCGTTAGGG
1 TATAGCAGCGTTAGGG
802752 CTAGCTCAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.38, T:0.25
Consensus pattern (16 bp):
TATAGCAGCGTTAGGG
Left flanking sequence: Indices 802220 -- 802719
TTGTATTGTTCTGACTGCATTGGTTGATTGGCTTACGACAAAGGTGATCATTTAACGTGTTTATA
GGAGTGAGTTGAAAGCGACATGCGTCTATATGACCTGCGTCACGAGTCTAGAGCGTTGACCTACT
GGTTGCTAGTAGGGTATATCTCAACTGAATGACGCTACTTCAGAAAGGTGTGCGCGGTTACAACG
CTTAGGAACTCGTTCGCCAAGCCAAGAGGGTCATCTTGATGACGTGGAACGTCAGTGGTTCCGCG
GGTACAGCGGCAAGGGATAGGGGCGTGGAACTGGAACATTTCTGTTACCGCATATGCCTAGCGTT
TATACGCATGGCTCGGACAGATTGACCCTATGTAGCCTTACGCCGCTAGCTCACGAAACGCATGG
CTCGCTGCACCCGTAGGGATATAGCCTACCGGCACAAGCGTTTATACGCATGGCTGGCTGCATTG
CTACCGCCGCTAGCTCACGAAACGCATGGCTCGGACATTCTATTC
Right flanking sequence: Indices 802752 -- 803251
CTAGCTCAGTGTTGCATGGCTCGCTGCAATGCCCCTTGTCCCCGCCAACGAGGCGGTGACCCCTG
CGACTGCCCGCCCTCGTCTCGGGGTTGCGCCTCTTAGAGGTGCCTATGTCTACTTCCATAAACTG
CTTTCGTAGCCTACTCAGCACCGCATCAACAACTACCCACCTCAACTAACCAACTATCTCCACCA
ACTACTCCCCGTCCTATATAAACTACCTTCATCAACTAACAAACCTTCCCACCCGGCTAGTTACT
ACCTCCGCCAGCCAACCATAACACGTTCTTTCTGAATGTTACCCCTCCGCACACCTTGGAACGGG
GAACAAACAACAATTGGCGTATATGTACGGGTACCGTCAACGTAAGTGGGTAACTAACAACCGGA
AATGGCAACTCTGCGTACGCATCTATGCGTTGTTGTTGTAGTAGAGAAAAATGTGTTACGTATAT
GATCTTGCCGGTTATCGCCCGCGTCTACGTATGGTGTTTCCTACA
Found at i:804785 original size:26 final size:26
Alignment explanation
Indices: 804756--804807 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
804746 CATCCCCTCA
804756 ATAACAGAACATAACATAACTCACTC
1 ATAACAGAACATAACATAACTCACTC
804782 ATAACAGAACATAACATAACTCACTC
1 ATAACAGAACATAACATAACTCACTC
804808 GGGTGGGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.04, T:0.19
Consensus pattern (26 bp):
ATAACAGAACATAACATAACTCACTC
Left flanking sequence: Indices 804256 -- 804755
GGAATGGTTTTGTGCCGCACTCCGTACTGACCCGGCACGAAGAGCCAGCCCAATGGATCGCCAAA
AGCAGGGGGGGTGGGCATGGGTGGTTGAGAACCGTGAATACGGAACTGATACGTAGTGCCACGAT
CGAGTGCTTCCGCGGTCTATTGTTGATACGGGTCCGCTCGATCTACTGTGAGCCGCACCTTCGTA
TGTACCTTATTGCGTAGATAGTTCGCGGCCGTATGTATGTAGTTCCGCTACCCAGTATCGTAACG
GGGCGTCTGCTCACACATGCTGGTGCTGCCTACGTAAACGCCGAGTGCAATTGAACCAGACCAGG
CAGGGTCAGAGGAGTGACTTGAACATTGGAACGGGAATCCAACCGCACACCAGGGAAGCAAGCCC
ACGAGCGTCAGAGCCAAAGCAGAACCCCTGCTATATATGAACAGAGGGTGGGTGGTAAGGTGCAG
GCTCATTAGTTACCGTCAGAGCCAAAGCGGAACCCCATCCCCTCA
Right flanking sequence: Indices 804808 -- 805307
GGGTGGGTGGGGTCCCAGCGTCATTCCGTACCGTACGGAACCGTATAAGCTTGATTCGATTCGAC
TCGACTTGACTGTTTTCGCGAATCGGAAATACTTCACTCGACACAACTAGACGACCCGCGACTTG
TTGTTGTTGGGGGTGCCTTTACTGACTGACTGATCAAGCGCTCGTTACCCTCGGTTACTGATCAA
GCGCTGGGTACCACTGCTCTGAACATCGTACCGTATCACTGTCGCTGCGGCAAGCATATAGTTCC
GAGCGTCATGCCGTTCGGGAACTACCATCTGACTAGAACACTATTGTGTGAAACCGCACAGGGGC
GCGTAGCGAACAACACCTTCTTCCGAGAGAGCGTAGCGACCAACATATCCTCGGTGAAACCGAGG
CGTGCTGAGTACAGTAACGCGGCGAAGACCGAGGAATTGGAACGCTGAAGCTGTGGCGTACGACT
GGGACTGGTTGGTGACCTTAGCAACATGTGGTCCGTACGACGACC
Found at i:805466 original size:27 final size:28
Alignment explanation
Indices: 805410--805475 Score: 109
Period size: 27 Copynumber: 2.4 Consensus size: 28
805400 AAGGTATGCC
*
805410 GGTATGTAT-TCACTCCATCCACGGTAA
1 GGTATGTATCTCACTCCATCCAAGGTAA
805437 GGTATGTATCTCACTCCATCCAAGGT-A
1 GGTATGTATCTCACTCCATCCAAGGTAA
805464 GGTATGTATCTC
1 GGTATGTATCTC
805476 CACGACGGGG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (28 bp):
GGTATGTATCTCACTCCATCCAAGGTAA
Left flanking sequence: Indices 804910 -- 805409
TCGACACAACTAGACGACCCGCGACTTGTTGTTGTTGGGGGTGCCTTTACTGACTGACTGATCAA
GCGCTCGTTACCCTCGGTTACTGATCAAGCGCTGGGTACCACTGCTCTGAACATCGTACCGTATC
ACTGTCGCTGCGGCAAGCATATAGTTCCGAGCGTCATGCCGTTCGGGAACTACCATCTGACTAGA
ACACTATTGTGTGAAACCGCACAGGGGCGCGTAGCGAACAACACCTTCTTCCGAGAGAGCGTAGC
GACCAACATATCCTCGGTGAAACCGAGGCGTGCTGAGTACAGTAACGCGGCGAAGACCGAGGAAT
TGGAACGCTGAAGCTGTGGCGTACGACTGGGACTGGTTGGTGACCTTAGCAACATGTGGTCCGTA
CGACGACCACGACGACCCGCATGGCTGGCTTATCGTTGCGGTTGCCCCTGCTTGCTTCAGTAACT
AGGGTGTCTATGCTTGTTCACATCCGTTCGACGGTAAGGTATGCC
Right flanking sequence: Indices 805476 -- 805975
CACGACGGGGAGGTCTCGGATTCATTGACCCACCGCATATGGCGGGCTGGTATCGGATTCATGCA
TCCACATAAACGGGATTCATGCATCCACATAAACGGGATTCATGCACCCGGGCTGGTATCGGCGC
ATCGGATACACCCACATATTGCGTATTCGGCTGGACAGATAGGAGCCACTGAGCGCCCACCGGTT
CCCGCACATGGGCAGATAGGTTCCCGCACCTCGCGTAGATACGCGCACAAGGCATTGAGCTCAAT
CGCGCCCGTATCTACCTAACGCTACGCTACGCTACCTGCTTCTCTCGTAACCTGCTGTGACCGAC
TTCCTTGTTCGCTGCTGGCAACGCAACGCGAGGCGTATCGGGTGGGGGGGTCAATGTGGCATATG
CGATCCTTTTCCGAGCTCCTGGCATCTGCGATCCAAAGCTGCTGGCAGAACTAGGGTGGGTGGGT
AGAGCTTCATAAGGCTGACTGAACTACCGCTGAAGGGCGCTGTCT
Found at i:805560 original size:23 final size:23
Alignment explanation
Indices: 805530--805586 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
805520 GGCTGGTATC
805530 GGATTCATGCATCCACATAAACG
1 GGATTCATGCATCCACATAAACG
805553 GGATTCATGCATCCACATAAACG
1 GGATTCATGCATCCACATAAACG
805576 GGATTCATGCA
1 GGATTCATGCA
805587 CCCGGGCTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (23 bp):
GGATTCATGCATCCACATAAACG
Left flanking sequence: Indices 805030 -- 805529
GTACCGTATCACTGTCGCTGCGGCAAGCATATAGTTCCGAGCGTCATGCCGTTCGGGAACTACCA
TCTGACTAGAACACTATTGTGTGAAACCGCACAGGGGCGCGTAGCGAACAACACCTTCTTCCGAG
AGAGCGTAGCGACCAACATATCCTCGGTGAAACCGAGGCGTGCTGAGTACAGTAACGCGGCGAAG
ACCGAGGAATTGGAACGCTGAAGCTGTGGCGTACGACTGGGACTGGTTGGTGACCTTAGCAACAT
GTGGTCCGTACGACGACCACGACGACCCGCATGGCTGGCTTATCGTTGCGGTTGCCCCTGCTTGC
TTCAGTAACTAGGGTGTCTATGCTTGTTCACATCCGTTCGACGGTAAGGTATGCCGGTATGTATT
CACTCCATCCACGGTAAGGTATGTATCTCACTCCATCCAAGGTAGGTATGTATCTCCACGACGGG
GAGGTCTCGGATTCATTGACCCACCGCATATGGCGGGCTGGTATC
Right flanking sequence: Indices 805587 -- 806086
CCCGGGCTGGTATCGGCGCATCGGATACACCCACATATTGCGTATTCGGCTGGACAGATAGGAGC
CACTGAGCGCCCACCGGTTCCCGCACATGGGCAGATAGGTTCCCGCACCTCGCGTAGATACGCGC
ACAAGGCATTGAGCTCAATCGCGCCCGTATCTACCTAACGCTACGCTACGCTACCTGCTTCTCTC
GTAACCTGCTGTGACCGACTTCCTTGTTCGCTGCTGGCAACGCAACGCGAGGCGTATCGGGTGGG
GGGGTCAATGTGGCATATGCGATCCTTTTCCGAGCTCCTGGCATCTGCGATCCAAAGCTGCTGGC
AGAACTAGGGTGGGTGGGTAGAGCTTCATAAGGCTGACTGAACTACCGCTGAAGGGCGCTGTCTA
TGTGTGAGTGTGGGGATCAATCCCCGGTTCTGCTTTCTATGTTGTGCGATTCCATGCAGTGCGCC
TATCTACACAACGCAAGGTCGGGAACCGCTAGGATGCCTTCGAAA
Found at i:806232 original size:39 final size:39
Alignment explanation
Indices: 806178--806255 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
806168 CCCACAGTCT
806178 CCCACGTGTTGTCATCCGTTGTTGCGGTATCACTATGGA
1 CCCACGTGTTGTCATCCGTTGTTGCGGTATCACTATGGA
806217 CCCACGTGTTGTCATCCGTTGTTGCGGTATCACTATGGA
1 CCCACGTGTTGTCATCCGTTGTTGCGGTATCACTATGGA
806256 TACGACGCCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.15, C:0.26, G:0.26, T:0.33
Consensus pattern (39 bp):
CCCACGTGTTGTCATCCGTTGTTGCGGTATCACTATGGA
Left flanking sequence: Indices 805678 -- 806177
ATGGGCAGATAGGTTCCCGCACCTCGCGTAGATACGCGCACAAGGCATTGAGCTCAATCGCGCCC
GTATCTACCTAACGCTACGCTACGCTACCTGCTTCTCTCGTAACCTGCTGTGACCGACTTCCTTG
TTCGCTGCTGGCAACGCAACGCGAGGCGTATCGGGTGGGGGGGTCAATGTGGCATATGCGATCCT
TTTCCGAGCTCCTGGCATCTGCGATCCAAAGCTGCTGGCAGAACTAGGGTGGGTGGGTAGAGCTT
CATAAGGCTGACTGAACTACCGCTGAAGGGCGCTGTCTATGTGTGAGTGTGGGGATCAATCCCCG
GTTCTGCTTTCTATGTTGTGCGATTCCATGCAGTGCGCCTATCTACACAACGCAAGGTCGGGAAC
CGCTAGGATGCCTTCGAAACTCGTATCGGGTGGGTGGGGTTCTGAAGGAGCTGCATGGTGTTGCA
GTACAGTATCTAACACTAGGCACCTGCCTTGTACTCCCACAGTCT
Right flanking sequence: Indices 806256 -- 806755
TACGACGCCAGTTCCAGTGTGTTACGCACGATCATGAATCGAATATCGGCAGTAAGTACAGTACG
AAATGGAATCCAATCGATCAGTGAGTTGTTCATGTTGGAGATAAACTCGTATCGGGTGGGTGGGT
TGCGTCACGTCACGTCGTCAGTTTCGTACCCACTCGTACCCTTCTATACACAAAACGAACGAGTT
TATCGTGGTATCCGAGAAAGGCTCGTACCTTCGAACTGTGCTACGGCCATGCCATGCTATCTGCT
TGTATCGTACTCAAGCCACTTCCGTCACTTACCGGAACCACCACCAACCAACCCCAACCATATTG
ACGCAGCGCAGCTGCTTAGCTAGCAGCAATAGCAGGCGGTGTCACCACAACTGAGAAGCCGCACC
CCGAACATACCTCTACTACAACAACAACGCTTTGCTCCCCTATTATATATGGTTGCAGGCGGCAC
CACTCGCATACGTATGTAGGCACGAACTTATTTCTGCCAGTAATG
Found at i:809519 original size:16 final size:16
Alignment explanation
Indices: 809498--809532 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
809488 CGCTATGACT
809498 CGCCAGGAGGAAGGAG
1 CGCCAGGAGGAAGGAG
*
809514 CGCCAGGAGGAAGGGG
1 CGCCAGGAGGAAGGAG
809530 CGC
1 CGC
809533 TGTTACCCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.51, T:0.00
Consensus pattern (16 bp):
CGCCAGGAGGAAGGAG
Left flanking sequence: Indices 808998 -- 809497
AGTGCACATTCCATATGGCTATTCATGTTTCTGCTGAGGAGGAAGGGTATATGGTGTACGGCAGT
TCTATGTAGAACACAGAAACGTTCATAACCACCTATAGAGACACGGGGTGGGGGTGGGGCACAGA
AACTACAACTCGATACTTCCCTGCTGCGCCACGTGTTGCTCACGTAACTGGTTGGCTACAGGCAG
GAAAGCAAAGCTCACTCGATGTTCCAGGGGTAGCGGCAAGTTGCCGGGTAAGGGCAGTTGGCTAC
AGTATGCGGGCAGGGAACGAGTCACCGCAGGGGTCTCCGGCAACACAGGGTAAGGATAAACCATA
CGCATACGCTGCCCGTGTTCTCGCGTGTATGGTCTATGTATCTATCTAGTTTGCACTCCGTATAT
AATGGTGGGTGACGGCGTTATTGATCAATCAGTATTCGTACCGGGCACATGTACACCGAACAGTT
GCCTATCACCGTTCGAATAAGAGGCTTTCGTCAATCGCTATGACT
Right flanking sequence: Indices 809533 -- 810032
TGTTACCCGGACCTTCCTTGCGCACTGCACACTGCAGAGGGGAGCCCGGCAGCGCAATGAACACC
GTAGAGTAGGGGTTACAATAACGGATGTGGTGTTGAACTCAGTTACTAGCTAGCCAGACTGGGCC
AACCACCCTTACCCAACGTAGCAGGGAAGGTGAAGGGGTAACACCCAAGAACAAGTAAAGCAGCC
CACCGTACGTCAATAACTGCCCCTCTCCTCGCCAACTATATGGATGGTCTCAAGTATGCTGCCTT
CGCCCGTTGTGGGTCCACTGCATATAGAAAGGAAAGCATTAGAAGGAACCGATAGTCGGTAAACA
ATCATTCCCCTGTTCGTTGGTTATCATGTCCTCGGTACTACGTTGTGGTACTTCGACTCCCGGCA
CTAGATCGGGTTGTTGATAAAGGATTCCGGGAAAGGGCAGCCCGCTCCCCGTAGACGCCGCCCCC
AATGTCTTCTCCATTTGCATCGCCCTTTATTGAGTAGCATGTGAC
Found at i:812373 original size:24 final size:24
Alignment explanation
Indices: 812341--812388 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
812331 TTTGACCCCT
812341 GTGTAGCTTGTGGTATACGAGTGA
1 GTGTAGCTTGTGGTATACGAGTGA
812365 GTGTAGCTTGTGGTATACGAGTGA
1 GTGTAGCTTGTGGTATACGAGTGA
812389 TTGAAGACGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.08, G:0.38, T:0.33
Consensus pattern (24 bp):
GTGTAGCTTGTGGTATACGAGTGA
Left flanking sequence: Indices 811841 -- 812340
ACTCCATACTCCATAATACGGTTTCATCAACTACAAGCAAGCGTAACACACTGGGCAATAAGCGT
AACATATGTGGAATTCTCGTCACACGTAGGTTTCAACATAGATCCATCCTGGTGACCACGTAGGG
ATAGGTGCACATACTAGATGGATCCATTCTGTACGGTCGATAACGTTCGCTCTTTGTAATACACG
CCTCTCGAACCCTACACGGTCGCTTAGAACACAGCGTACTACCTTCCTCTACACCTCAGTGTTGC
AGTTATGCTCGAACACTTGATACATAGCCGGGTACGTCGTTGGGGGGTGGGAATCCGGTCATAGA
TGGTGGTCAGCTTTATAGGTCAGCAACAAGTAGCCGGGTTATTGGAGGGAGTCAGAAGCTCTTAC
CTCTTCCACGTGTCTAGTGCGTGCTTCGGTTGGCGGCTAAGCAGCTGAGTCAATGAAGACCGGGG
GGTTAGTTATATAGGGGAGAGGTTGTTGCATCCGCTTTGACCCCT
Right flanking sequence: Indices 812389 -- 812888
TTGAAGACGTGAGTGGGGGCCTCCGCGAACGAAGACCTCGCTTGAGGATGCCCAACCCAACGAGG
AACAGCGTGTAGGTTAGACTAGAAAGGTAGAAAGGTTAGTGTTGCAGCGTATGTGGGAAGAGGGA
GGTCGATATGTTACAAGTGCCGGGTGAAGCAGTTTACGTCGCATAGAGAGGTGACGAAAAACCAC
CACTGTGCTAACCTGTAAACACGTAACCTGAGGCTGCATTTGAGGCTCGACGTAACCTGAGGCTG
CATTTGAGGCTCGGTGTGCTAACCTGTAAACACGTAACCTGAGGCTGCATTTGAGGCTCGGCTCT
AGGTACACAAGTCCCACTTGTTCGGATCGGGCATGAGTCGGCCATCCGGGACAGCATGGAGGGTA
TCAGAGCACCAGCCACGCACGACCTGTAACGGGATGAGGCATGTCGAAGAGCCAACATTGCATTT
TCTAGAATGGAGCCAAGGCACGTAGGGAACCGTTTATGCCGATGC
Found at i:812646 original size:29 final size:29
Alignment explanation
Indices: 812604--812661 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
812594 ACCTGTAAAC
812604 ACGTAACCTGAGGCTGCATTTGAGGCTCG
1 ACGTAACCTGAGGCTGCATTTGAGGCTCG
812633 ACGTAACCTGAGGCTGCATTTGAGGCTCG
1 ACGTAACCTGAGGCTGCATTTGAGGCTCG
812662 GTGTGCTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (29 bp):
ACGTAACCTGAGGCTGCATTTGAGGCTCG
Left flanking sequence: Indices 812104 -- 812603
TATGCTCGAACACTTGATACATAGCCGGGTACGTCGTTGGGGGGTGGGAATCCGGTCATAGATGG
TGGTCAGCTTTATAGGTCAGCAACAAGTAGCCGGGTTATTGGAGGGAGTCAGAAGCTCTTACCTC
TTCCACGTGTCTAGTGCGTGCTTCGGTTGGCGGCTAAGCAGCTGAGTCAATGAAGACCGGGGGGT
TAGTTATATAGGGGAGAGGTTGTTGCATCCGCTTTGACCCCTGTGTAGCTTGTGGTATACGAGTG
AGTGTAGCTTGTGGTATACGAGTGATTGAAGACGTGAGTGGGGGCCTCCGCGAACGAAGACCTCG
CTTGAGGATGCCCAACCCAACGAGGAACAGCGTGTAGGTTAGACTAGAAAGGTAGAAAGGTTAGT
GTTGCAGCGTATGTGGGAAGAGGGAGGTCGATATGTTACAAGTGCCGGGTGAAGCAGTTTACGTC
GCATAGAGAGGTGACGAAAAACCACCACTGTGCTAACCTGTAAAC
Right flanking sequence: Indices 812662 -- 813161
GTGTGCTAACCTGTAAACACGTAACCTGAGGCTGCATTTGAGGCTCGGCTCTAGGTACACAAGTC
CCACTTGTTCGGATCGGGCATGAGTCGGCCATCCGGGACAGCATGGAGGGTATCAGAGCACCAGC
CACGCACGACCTGTAACGGGATGAGGCATGTCGAAGAGCCAACATTGCATTTTCTAGAATGGAGC
CAAGGCACGTAGGGAACCGTTTATGCCGATGCCGGTAGTCGTCACAGAAACATCTGCATAGTGTT
ACGCTGTTACGCTGTTACGCTGTTACGTTAGTGCCGGTGCCGGTGCCGAAACCAGCAGCTTTATC
CGATGCGGCCAACGAACGAGCTGGATACCTTGTGGCGGGGTAGCTGGATACCTTGTGGCAGGGTT
ACGTAACACACGGCAGGTCCAGCGAGAACACAAATAACTCGAGTTGACGTACACCTATGCGTTTG
GAAGGGCCAAGAGTGAGTGATGCTATACGCACCATCCTAGTGTTA
Found at i:812931 original size:8 final size:8
Alignment explanation
Indices: 812918--812948 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
812908 ATCTGCATAG
812918 TGTTACGC
1 TGTTACGC
812926 TGTTACGC
1 TGTTACGC
812934 TGTTACGC
1 TGTTACGC
812942 TGTTACG
1 TGTTACG
812949 TTAGTGCCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.13, C:0.23, G:0.26, T:0.39
Consensus pattern (8 bp):
TGTTACGC
Left flanking sequence: Indices 812418 -- 812917
CGAAGACCTCGCTTGAGGATGCCCAACCCAACGAGGAACAGCGTGTAGGTTAGACTAGAAAGGTA
GAAAGGTTAGTGTTGCAGCGTATGTGGGAAGAGGGAGGTCGATATGTTACAAGTGCCGGGTGAAG
CAGTTTACGTCGCATAGAGAGGTGACGAAAAACCACCACTGTGCTAACCTGTAAACACGTAACCT
GAGGCTGCATTTGAGGCTCGACGTAACCTGAGGCTGCATTTGAGGCTCGGTGTGCTAACCTGTAA
ACACGTAACCTGAGGCTGCATTTGAGGCTCGGCTCTAGGTACACAAGTCCCACTTGTTCGGATCG
GGCATGAGTCGGCCATCCGGGACAGCATGGAGGGTATCAGAGCACCAGCCACGCACGACCTGTAA
CGGGATGAGGCATGTCGAAGAGCCAACATTGCATTTTCTAGAATGGAGCCAAGGCACGTAGGGAA
CCGTTTATGCCGATGCCGGTAGTCGTCACAGAAACATCTGCATAG
Right flanking sequence: Indices 812949 -- 813448
TTAGTGCCGGTGCCGGTGCCGAAACCAGCAGCTTTATCCGATGCGGCCAACGAACGAGCTGGATA
CCTTGTGGCGGGGTAGCTGGATACCTTGTGGCAGGGTTACGTAACACACGGCAGGTCCAGCGAGA
ACACAAATAACTCGAGTTGACGTACACCTATGCGTTTGGAAGGGCCAAGAGTGAGTGATGCTATA
CGCACCATCCTAGTGTTACAGTCCCCCACACTGAACATCCAGAGCATTGGTGGTGGGGGTGGGTG
GGTCCCGCTTGGGATCCGGAACTTACCGGCACTACATCGGGACTCCATCGAAGTACCATTTGTAT
TCCACATGTAACAGTAAGTTACCAACTCTCTTATGATCAAGCACGAATAGCACGAACGCGTGCGA
GATAGGAACCCCACGAACGCGTGCGAGACAGGAACCCCTGTAGGGAAATAGGAGCACCGCTACCT
GCTCCGTAGCTCTAGACGATGTGCCGCGGGAGGCGTTAGAGAAGT
Found at i:813035 original size:23 final size:23
Alignment explanation
Indices: 813005--813050 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
812995 CCAACGAACG
*
813005 AGCTGGATACCTTGTGGCGGGGT
1 AGCTGGATACCTTGTGGCAGGGT
813028 AGCTGGATACCTTGTGGCAGGGT
1 AGCTGGATACCTTGTGGCAGGGT
813051 TACGTAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.17, G:0.41, T:0.26
Consensus pattern (23 bp):
AGCTGGATACCTTGTGGCAGGGT
Left flanking sequence: Indices 812505 -- 813004
TGTGGGAAGAGGGAGGTCGATATGTTACAAGTGCCGGGTGAAGCAGTTTACGTCGCATAGAGAGG
TGACGAAAAACCACCACTGTGCTAACCTGTAAACACGTAACCTGAGGCTGCATTTGAGGCTCGAC
GTAACCTGAGGCTGCATTTGAGGCTCGGTGTGCTAACCTGTAAACACGTAACCTGAGGCTGCATT
TGAGGCTCGGCTCTAGGTACACAAGTCCCACTTGTTCGGATCGGGCATGAGTCGGCCATCCGGGA
CAGCATGGAGGGTATCAGAGCACCAGCCACGCACGACCTGTAACGGGATGAGGCATGTCGAAGAG
CCAACATTGCATTTTCTAGAATGGAGCCAAGGCACGTAGGGAACCGTTTATGCCGATGCCGGTAG
TCGTCACAGAAACATCTGCATAGTGTTACGCTGTTACGCTGTTACGCTGTTACGTTAGTGCCGGT
GCCGGTGCCGAAACCAGCAGCTTTATCCGATGCGGCCAACGAACG
Right flanking sequence: Indices 813051 -- 813550
TACGTAACACACGGCAGGTCCAGCGAGAACACAAATAACTCGAGTTGACGTACACCTATGCGTTT
GGAAGGGCCAAGAGTGAGTGATGCTATACGCACCATCCTAGTGTTACAGTCCCCCACACTGAACA
TCCAGAGCATTGGTGGTGGGGGTGGGTGGGTCCCGCTTGGGATCCGGAACTTACCGGCACTACAT
CGGGACTCCATCGAAGTACCATTTGTATTCCACATGTAACAGTAAGTTACCAACTCTCTTATGAT
CAAGCACGAATAGCACGAACGCGTGCGAGATAGGAACCCCACGAACGCGTGCGAGACAGGAACCC
CTGTAGGGAAATAGGAGCACCGCTACCTGCTCCGTAGCTCTAGACGATGTGCCGCGGGAGGCGTT
AGAGAAGTGACTTTATTGGGGTCCGCTGTCCAGGGCCGAACCCAACCAACCGTTATGGCACTTGC
CCCGTTCTTACATAGTGCCGTTCCGCGTCCCACGGTTATTGAGGC
Found at i:813360 original size:26 final size:26
Alignment explanation
Indices: 813324--813376 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
813314 GCACGAATAG
*
813324 CACGAACGCGTGCGAGATAGGAACCC
1 CACGAACGCGTGCGAGACAGGAACCC
813350 CACGAACGCGTGCGAGACAGGAACCC
1 CACGAACGCGTGCGAGACAGGAACCC
813376 C
1 C
813377 TGTAGGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.34, G:0.30, T:0.06
Consensus pattern (26 bp):
CACGAACGCGTGCGAGACAGGAACCC
Left flanking sequence: Indices 812824 -- 813323
GAAGAGCCAACATTGCATTTTCTAGAATGGAGCCAAGGCACGTAGGGAACCGTTTATGCCGATGC
CGGTAGTCGTCACAGAAACATCTGCATAGTGTTACGCTGTTACGCTGTTACGCTGTTACGTTAGT
GCCGGTGCCGGTGCCGAAACCAGCAGCTTTATCCGATGCGGCCAACGAACGAGCTGGATACCTTG
TGGCGGGGTAGCTGGATACCTTGTGGCAGGGTTACGTAACACACGGCAGGTCCAGCGAGAACACA
AATAACTCGAGTTGACGTACACCTATGCGTTTGGAAGGGCCAAGAGTGAGTGATGCTATACGCAC
CATCCTAGTGTTACAGTCCCCCACACTGAACATCCAGAGCATTGGTGGTGGGGGTGGGTGGGTCC
CGCTTGGGATCCGGAACTTACCGGCACTACATCGGGACTCCATCGAAGTACCATTTGTATTCCAC
ATGTAACAGTAAGTTACCAACTCTCTTATGATCAAGCACGAATAG
Right flanking sequence: Indices 813377 -- 813876
TGTAGGGAAATAGGAGCACCGCTACCTGCTCCGTAGCTCTAGACGATGTGCCGCGGGAGGCGTTA
GAGAAGTGACTTTATTGGGGTCCGCTGTCCAGGGCCGAACCCAACCAACCGTTATGGCACTTGCC
CCGTTCTTACATAGTGCCGTTCCGCGTCCCACGGTTATTGAGGCTACAAAGCAGCACATAGTGCA
TTCTCAGTTCTGCCGATGTTGATCGGGCGGGGTTATATAGAGAGGTACAATGGAGGAAAGCACAA
CTCAGAGATAGTCAGCAAGGCGCGACTCACCTCGGGTCATTTACATGGTCCTATAGAATATGCAC
GATACTTCGATGTCTTACGTGATAGAGTAATCGATTTGTGAAACCGGGCGGCCGCTTAGTCACAT
AGCCAGTAGCCGCCAACGTAGCCAGTCGAGTAGCTGCCTTTCAATATGGGGTTAGTACGGAACAT
CATTCCGTAAACCACGATGCCCCTACGCCGCATTGAGTCGCATGT
Found at i:815356 original size:13 final size:13
Alignment explanation
Indices: 815338--815363 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
815328 GTACAATAAT
815338 CGTATAGTCTATA
1 CGTATAGTCTATA
815351 CGTATAGTCTATA
1 CGTATAGTCTATA
815364 TGGCTACCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
CGTATAGTCTATA
Left flanking sequence: Indices 814838 -- 815337
CCATCCGCGAGAGCCATGTGTACATCCTATTCGTACATCTACATAAAGTCCACCGCCAGCAGCAC
CATTCTAAATCCATACTCGGTGGGCAGGTTGCAGCGGAGTCTCTTTCACCAAGACCCGAACATCC
CTCAACCGCAAGTTCCGCTCACCGCACAACCCTATTGTCTGTACTTGAACAACCCCCCACCGTAC
GTCAATAACGGTAAGCTGGAGGCTCATCAACCACGGTGAGGTACAACGCGGTTCTAACGTGCAAA
AGACGGCCTGCCCCACACATACGCATCAGGTTAAGACCTTCCACACACTGAACACCAGAAGGAAG
TCCCTGGTTGAGCTAGAGCGGGTACTCGATATCAACTATAGTGCGATGGGTAATATGAACGCCTG
ATTGTACTTGGAAGTGCTCCTATATGGCTAGATGGAATGAAGATGATGTGGTAGAATATGACTTG
AGAATACAATATGAAATGGGCGATAAGCTTACTGCGTACAATAAT
Right flanking sequence: Indices 815364 -- 815863
TGGCTACCTGTTGGCGAACGGAACCGAAGTTGCGCCAGTAGATCCTGAATGCTGTAGTCACCGAG
AATGCAATATACGCTTTTCGGCGTACTGGAGGGTGAGATCACGGGGTTGAGGGGGCAGAGGGAGC
GAACTACGTAAGATGCAATGTGCCGGAAACAGTATCGTGAGTGGTCTAACCGCTGGCCAGGCTAC
GAAGCTCTAGGCTGTTCGTCCAGTTATCCTCCCACGAGGCCCGTCAGTGAACAACGACCCCAGCC
CAACCCCCTTGATATGCCGCCCTTTTCTGTATAGAGTGATTACGACTTACTAGGTATTCGATATG
CGAAGCAAGGGAACTACCGGCACATATATGTGTGGCTACTGGCTCTAGAGCTGTCGTCCGTCGAG
CTCGAGGTCCCGCCTCGGGTGAGCCGAATTCCCCACCGTCATGTAACAGTACGATATCTGTAGTG
TCGCTTGTTATCAACATACCATGGCGCGTTGTTAACACGCGTCAA
Found at i:821469 original size:29 final size:30
Alignment explanation
Indices: 821431--821494 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 30
821421 TCCCTTGTCC
821431 CGTTAGA-TGGGAAGGCTTCATGGTTCCGT
1 CGTTAGAGTGGGAAGGCTTCATGGTTCCGT
821460 CGTTAGATGGGTGGGAAGGCTTCATGGTTCCGT
1 CGTTAGA---GTGGGAAGGCTTCATGGTTCCGT
821493 CG
1 CG
821495 GTTTCGTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 7 0.23
33 24 0.77
ACGTcount: A:0.16, C:0.17, G:0.38, T:0.30
Consensus pattern (30 bp):
CGTTAGAGTGGGAAGGCTTCATGGTTCCGT
Left flanking sequence: Indices 820931 -- 821430
CCCTACAGGTACTTCGTACCCTCTAACGCCCTACCGGTACTTCGTACCACCGCTGCTGGGCACAG
GTACGTAAGCGTTTCGCCGCCTCCGGTACTACGTACCGTCGTGTTGGACGCTTCGCGGTAGATGT
CAGTGCCGTTTCCGAAACAGTGGCCCGTGGCCCTCCGGGATCGCGCTTCGCGTGTATAACGGCTA
GGTAGAGTGTCGTTTCGTGTAGGTGTTCCTATTGGGCCGACGAAAGCGAGGTTATTGATCTATGT
CGTTGATGTGCTGGATGTTGGTTGGGGGATGTACCACCTATATCTATATTATATTATATAATAAG
GTAGATATGACGATGACGCGTAGGCGAAGAAAACCCTCATCAGTGACTGTCCGTCGGTCTTCCTC
TTTCCCTCAGTGACTTCCCGTCGGTCTTCCTCATCAGGTGCCAGGGCATCAGGCATTTGTTCATG
GTCCTCTTTAGGCAGCATGGTCGGTTCCGTATGAATCCCTTGTCC
Right flanking sequence: Indices 821495 -- 821994
GTTTCGTTGTTCCCTCTCAGAGTCTAGATAATGGCGGGAAGGCGTGTTCCACTACTATACTATAA
ACGGCACGGCGGCCCTCGGAGTTGGTCTTGCTCATTTCTGCTTGTATCCAACGTTCATGGTTCAT
TCATCTGTCACGGATCCTGATGGTTTGTAAACGATAGACTTCGCCCGGCCTCATCAGTGCAACTT
CCGCACGCGATACTTCCTGATAGAGTATACGGTTTCGGAAGGGGGTTCATGTGCAGAAGTTGGTG
TTGTTGTGGGAAGCATCGTTATGGTCTATGTATACGGGTACCGCTTTTCGGGCTTATGCCTTTGT
CCGTGCACTTACGGTAGACGGTTTTCGTGAATATGAGAGCAATGCACAGTGGGTAAGTGTCACCG
GTTCCTCATTCTCCTGTGTCCCGGTTTCACGCTCCCAGGTACCGTATGTACCCGGCCAAGGCGAT
TCAATATAGATACAACACTTCGGTTCCGATATGCCGAACACTCAA
Found at i:829425 original size:21 final size:20
Alignment explanation
Indices: 829394--829446 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 20
829384 CCTACGTAAC
829394 GGTAGGTATGGCTATCTATATA
1 GGTAGGTATGGCTA--TATATA
829416 GGTA-GTATGG--ATATATA
1 GGTAGGTATGGCTATATATA
829433 GGTAGGTATGGCTA
1 GGTAGGTATGGCTA
829447 GAGTCATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 10 0.36
18 6 0.21
19 1 0.04
20 1 0.04
21 6 0.21
22 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.32, T:0.34
Consensus pattern (20 bp):
GGTAGGTATGGCTATATATA
Left flanking sequence: Indices 828894 -- 829393
CTGCATTGAGAAACTGCTCAACGCGGTCAACCTTGGCTCCCTTCGTTCCCGGCACCTTCTGCGTG
GGGCCCCCACACTCATATATAACTAGAAACAAGATCGACAGATTCCTTATTATGGATGGGCCCAG
CCGGATCTAGCTCGATCAGGCCGAAGGCTAGAGCGATCCGTCCCCCACCTCAATAACTGCCGGTT
GACCGGAGAACGAGTTGACGAGTTATCGTGCGCCTTTCCACCTTTCCACCATATTGACGTAGCTG
AAGCGGGGCCCGCCATATGAGCGCACTTTAGTAATGTTTGCTCGGTGTTTGGGGGCTATCTAAGA
GTGAGGTTTCGAGGTGGTGTAGAGCCCCCCAGTGTGGAGGAGGTACCGAACACCATTGACGACTG
GATATACGGTACCTTACACCATGACTGGAGGCTACGAAAGCCTGGGATATATCGCTTAGGTGCTT
AGTTAGTTGCTCATGACTTTCTAATTGTTTGTTGCCCTACGTAAC
Right flanking sequence: Indices 829447 -- 829946
GAGTCATTTAGTAGCCTACAGTAACGGTAGGTAGTGTGCGGTAGGTAGATGCCATTCCCGAGTCA
CGTAGGGAATGGTTGGGTTTTGGGTTCGAGACCAGACCAGCCGTAGCCATTCCCCGGTTAGGTTT
AATAGCTACCATAGAGCGTAGCGTGCCACGAAAGGTCAGGAGGCGGCTATGGTTTGTAGATCCTT
TTGTACTGGTAGCCGTTAGTTCGTGAACTGATGAGTGAATCACCCTAATAACGGCTGTGTACAGA
AACCTTCAAGTGGATCGCTTAGCTCTAGGCAAACTGACTCAAGTAATCGCCTTTGGCCCTACTCT
TTCCACCATATTGACGTAGTACCGCTGCTGGTCTTGGCCGTATATAACAACGTGAGGTGGGCCGC
TCCGATTCGTTATAGAAGTACTTGATACTAAGGAATGGCCCAGTTCCAGTGATTCTATCTGCCCT
ATTGTGCCGGTTACGAATTGTCCGGATTCCCTACCCTACATATGT
Found at i:830457 original size:26 final size:21
Alignment explanation
Indices: 830399--830466 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
830389 GATCCCGTCA
830399 AGTCATAGAACCCGACCCACG
1 AGTCATAGAACCCGACCCACG
830420 AGTCATAGAACCCGACCCACG
1 AGTCATAGAACCCGACCCACG
* *
830441 AGTCATAGAGCCCAACCCACG
1 AGTCATAGAACCCGACCCACG
830462 AGTCA
1 AGTCA
830467 GAGGTAATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.34, C:0.37, G:0.19, T:0.10
Consensus pattern (21 bp):
AGTCATAGAACCCGACCCACG
Left flanking sequence: Indices 829899 -- 830398
CCTATTGTGCCGGTTACGAATTGTCCGGATTCCCTACCCTACATATGTACTTGTCTCCCGTACAG
ATGAAGCTACAGCGCTTATGACAAAGGGCAGAACATCTGCTTCCCAGTGCCGCATATTCCCTATG
CCTTGTTGTGTTTGTTTCAGTTCTTCAAGCTGCGGATGGTACTCGCCCCGAAGCACAGAGCACAG
AGTTGTTGGTCATGAAGCGGCGGCTATCTCTCTAACCTCGCGTCATGAAGCACCTCGCTACAAGC
ACTGAACTCAACTAAACCGACATCACTAGGGGAATGGAATCACAAACCCTCGGTATTGGAATCAC
AAATCCTGAGACTGGCATTGGCAGGTTGGTCCTCTTCGCTTCGAATAAAAAGGAAGTCAGTTACT
AGCTCTGCTAACTCCTCAAAGTCAGTAACTAGCCCCAGTAACTCAGTCACCGGTTCCTCATTCAC
TAACTACAGGACCTAAGTCACTAGCTCGTAACGCAGATCCCGTCA
Right flanking sequence: Indices 830467 -- 830966
GAGGTAATGAGGCAAGTCAGACCCCGTAACCCGCCGCGAGTCAGACCTACCAACTCACGAACCTT
GATACTTCATAAGAGCATCCAGTTCCTAAGAAGCAAAAACGAGTGGCATCCAACCCCTACTAACT
GACTTTTCGCAGTCAGCTCCCCAATTCCTAACAAGCGTGAAATGAGTCATACCAGACCTTCACGC
GTTATATAAGTAAGCGCGTACAAGGAATGGGCCCGTCCAAGTGCCTTTCTCTGTGGGCCATTTGG
GGGAACACCGCCCCAACCTGATACGTACAAACTGGGTGGGTGGTAAGTAGCCGAACCACAACCCA
CAACCCCGATCCCGGCTACATGGTGGGGTTGATGCGGGTATAACGGCCCCCAAACCCCGGGGATT
TTTCCCGTGATTGCAAGCACTGATACGGGAGTTGGTGTAGCCTACTCTTCTATATAGAACGTCGG
GCATGCAAGCAAGCGCTGGTATCTCGTAGGGTAACGAGGAAAGGG
Found at i:832012 original size:48 final size:47
Alignment explanation
Indices: 831941--832035 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 47
831931 TTACGATTGA
831941 CTAGTGCAGTTGGACGCCCCCTATATAGCTAGTTGTGCCCAACGTGTG
1 CTAGTGCAGTTGGACGCCCCCTATATAGCTAGTTGTGCCC-ACGTGTG
831989 CTAGTGCAGTTGGACGCCCCCTATATAGCTAGTTGTGCCCACGTGTG
1 CTAGTGCAGTTGGACGCCCCCTATATAGCTAGTTGTGCCCACGTGTG
832036 TCGGGGTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 7 0.15
48 40 0.85
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.27
Consensus pattern (47 bp):
CTAGTGCAGTTGGACGCCCCCTATATAGCTAGTTGTGCCCACGTGTG
Left flanking sequence: Indices 831441 -- 831940
ATCGCGCCGGTGCATGGATATGTAACGTGAAACCTGATTCGTTGGGAGGTCGCTCTTACTGCGCT
GGATGGACCGGATAGAGGCATGGCCCAATGCTGCTTACCCTGGCAATAGTTGGCGGGGCGGCAAT
CAAGTAACAAAGGGCAGGCGTTAGATGGCATATCAGTAAGCCGATCAGGTACCTTGATACGGCAA
GCCCCTCTCCCACACGCGATATAGGTCTGATACTACGTCAGAGCTTGTTGTTTGTTCCCCAGTTC
ATGGATGATCATAACGGTCCATCAAGGTGCGCAACGATCGGTCGCTCTGCTGCGACCTTCTGCGG
GTGATCTGGTTGCTTACGCAGGTGATATGGTTGGATAGTGACTGTCGCGGGTGAACGAGATGACC
GGTGGGCGTGTCTTGATGAAAATGACTCTGGTTGCTTGATACCCACTTTCTGTAACGGTGAGACG
GCTCCGCTCTGACCTGTTCCCGCCGATTCACCGAGTTACGATTGA
Right flanking sequence: Indices 832036 -- 832535
TCGGGGTTGAGCTTCCACGTATGTGGGGCCGCTCCGCGTATGTGGGGCCGCTCCGCTCTTTAAAC
CACGTATGTGGGAACGCCGTTGGTCATGCGCAGATGGTATTGGTCTGGATGATCTTCTTGCAAGA
GCGAGAGAACCTCCCTACCCCGGCTATACGTTGGGGGAACAGGGTCTCTTAGAATGCAGCGAGGC
ACGCGCCAACTGAGCGGGCAACAACGAACAGGTCGTGGGTGGGGTATTGTATCGAGCCCTCGTGG
CAGGTTGAAAACCCGTCTTTCTCGATGCCCCGCTACCTTGCATTTGACACTCCTGTTTCGAGAGA
TGAGGGGAAGCAGCGCGACCCGATGTTCCGCACCGCTTCATCGGAAGCGGCAATGATACCATCGC
TTCGTATAAGCGCAACAATGTGCCGGAGGCGCGTTTCGACGACCACAACGTAGGTAGCTGGAAAT
AGTACTGTGTTTCCCCAAAGGCACACGAGATCAGGCGAGTTGTAA
Found at i:832077 original size:19 final size:19
Alignment explanation
Indices: 832053--832091 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
832043 TGAGCTTCCA
832053 CGTATGTGGGGCCGCTCCG
1 CGTATGTGGGGCCGCTCCG
832072 CGTATGTGGGGCCGCTCCG
1 CGTATGTGGGGCCGCTCCG
832091 C
1 C
832092 TCTTTAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.33, G:0.41, T:0.21
Consensus pattern (19 bp):
CGTATGTGGGGCCGCTCCG
Left flanking sequence: Indices 831553 -- 832052
AGTTGGCGGGGCGGCAATCAAGTAACAAAGGGCAGGCGTTAGATGGCATATCAGTAAGCCGATCA
GGTACCTTGATACGGCAAGCCCCTCTCCCACACGCGATATAGGTCTGATACTACGTCAGAGCTTG
TTGTTTGTTCCCCAGTTCATGGATGATCATAACGGTCCATCAAGGTGCGCAACGATCGGTCGCTC
TGCTGCGACCTTCTGCGGGTGATCTGGTTGCTTACGCAGGTGATATGGTTGGATAGTGACTGTCG
CGGGTGAACGAGATGACCGGTGGGCGTGTCTTGATGAAAATGACTCTGGTTGCTTGATACCCACT
TTCTGTAACGGTGAGACGGCTCCGCTCTGACCTGTTCCCGCCGATTCACCGAGTTACGATTGACT
AGTGCAGTTGGACGCCCCCTATATAGCTAGTTGTGCCCAACGTGTGCTAGTGCAGTTGGACGCCC
CCTATATAGCTAGTTGTGCCCACGTGTGTCGGGGTTGAGCTTCCA
Right flanking sequence: Indices 832092 -- 832591
TCTTTAAACCACGTATGTGGGAACGCCGTTGGTCATGCGCAGATGGTATTGGTCTGGATGATCTT
CTTGCAAGAGCGAGAGAACCTCCCTACCCCGGCTATACGTTGGGGGAACAGGGTCTCTTAGAATG
CAGCGAGGCACGCGCCAACTGAGCGGGCAACAACGAACAGGTCGTGGGTGGGGTATTGTATCGAG
CCCTCGTGGCAGGTTGAAAACCCGTCTTTCTCGATGCCCCGCTACCTTGCATTTGACACTCCTGT
TTCGAGAGATGAGGGGAAGCAGCGCGACCCGATGTTCCGCACCGCTTCATCGGAAGCGGCAATGA
TACCATCGCTTCGTATAAGCGCAACAATGTGCCGGAGGCGCGTTTCGACGACCACAACGTAGGTA
GCTGGAAATAGTACTGTGTTTCCCCAAAGGCACACGAGATCAGGCGAGTTGTAACCCGGATGGTA
ATCAACTTCGCAACACTAACGTTCCAACCACGCGGCGGCAACTAA
Found at i:833902 original size:18 final size:18
Alignment explanation
Indices: 833879--833914 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
833869 CATAAACAGC
833879 GCGTCTTCTCGCGTACAT
1 GCGTCTTCTCGCGTACAT
833897 GCGTCTTCTCGCGTACAT
1 GCGTCTTCTCGCGTACAT
833915 AAGGAAGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.33, G:0.22, T:0.33
Consensus pattern (18 bp):
GCGTCTTCTCGCGTACAT
Left flanking sequence: Indices 833379 -- 833878
CCATAGCACGGTAAGGTAAGCTACGGCCGGGTTATATAGAGAGGTGTGCCGACCAATGCCCACAT
AACCACGGGGTTGCATCTTCAAGGTGGAGTAGCGGATACTTCTCTCCAGCAGCCATCACTTGGTT
AGATGTTCCGTGCAAGGCGAGTGTGTTTCAAACCACTGCTGTTACTGGTATATACGTATATAACC
CGTAGGGGTGCGTGGCGTGCCTCAATATGACCCACGTGCTCCACTTGTTCCGGGCCTCGTTGCAA
TCACTCACTTGCCGGAATCTCGTTCAATCACTCACCGAACAGCCCCCATAACACCCCGCATAGCC
CGAACCGGTAGCCGGCTGCGACTTACTGGGGAAAGTCGACTACAGGTGTGCGTCATACCCCATAT
AGTAGAGGAAATTCAATAAACAGCCACAAAGAACTCATCCCTAGACCCGCTGCGCTGTCACTAAG
CATAAACGCAGTACTGTAGGCTGGAGCCGTTCCCACATAAACAGC
Right flanking sequence: Indices 833915 -- 834414
AAGGAAGTCCTAGTACTTGACGCATAGCTCCTCGCAACCGCAAGGTGCTGGGCCTTAGGGGTACC
CCCGTACAAGGGCAAGTGAAGTCAAGTCAAGGAGACCGTTCATGGCGTACGTGCGGGCATAGGTA
GGGGTCTGAGACCGCATAAATCCCCGCTCCCAGGGATCGTTGAAGGCGTGGCGCTTCCTTACTCA
CCTGTAGTGGGCTTACTCACCTGTAGTGGGCTTACTCACCTGTAGTGGCGGACCGTACTCACGTT
ATATAAGGTTCCACGCCATATATACGGGAACAGCGTACAGGCTGACAAATATTTCTGCATACGTA
GCCGTATTCGGGGGTACCCCAACACCCCCTTCCTCCGTGGGGCTCAGACAGGCGGTGTTCGCTCC
GTATGGTGAGGGTGAGTGTGATCGACTCCCACGCGGTGGTTGGGCTTGGTACTCAACCTCTTGGT
ATTCTTTTCTGTATATACCGGCAGCAACTGTTGTTTGTGCGCCTT
Found at i:834126 original size:19 final size:19
Alignment explanation
Indices: 834102--834157 Score: 112
Period size: 19 Copynumber: 2.9 Consensus size: 19
834092 GTGGCGCTTC
834102 CTTACTCACCTGTAGTGGG
1 CTTACTCACCTGTAGTGGG
834121 CTTACTCACCTGTAGTGGG
1 CTTACTCACCTGTAGTGGG
834140 CTTACTCACCTGTAGTGG
1 CTTACTCACCTGTAGTGG
834158 CGGACCGTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.16, C:0.27, G:0.25, T:0.32
Consensus pattern (19 bp):
CTTACTCACCTGTAGTGGG
Left flanking sequence: Indices 833602 -- 834101
GACCCACGTGCTCCACTTGTTCCGGGCCTCGTTGCAATCACTCACTTGCCGGAATCTCGTTCAAT
CACTCACCGAACAGCCCCCATAACACCCCGCATAGCCCGAACCGGTAGCCGGCTGCGACTTACTG
GGGAAAGTCGACTACAGGTGTGCGTCATACCCCATATAGTAGAGGAAATTCAATAAACAGCCACA
AAGAACTCATCCCTAGACCCGCTGCGCTGTCACTAAGCATAAACGCAGTACTGTAGGCTGGAGCC
GTTCCCACATAAACAGCGCGTCTTCTCGCGTACATGCGTCTTCTCGCGTACATAAGGAAGTCCTA
GTACTTGACGCATAGCTCCTCGCAACCGCAAGGTGCTGGGCCTTAGGGGTACCCCCGTACAAGGG
CAAGTGAAGTCAAGTCAAGGAGACCGTTCATGGCGTACGTGCGGGCATAGGTAGGGGTCTGAGAC
CGCATAAATCCCCGCTCCCAGGGATCGTTGAAGGCGTGGCGCTTC
Right flanking sequence: Indices 834158 -- 834657
CGGACCGTACTCACGTTATATAAGGTTCCACGCCATATATACGGGAACAGCGTACAGGCTGACAA
ATATTTCTGCATACGTAGCCGTATTCGGGGGTACCCCAACACCCCCTTCCTCCGTGGGGCTCAGA
CAGGCGGTGTTCGCTCCGTATGGTGAGGGTGAGTGTGATCGACTCCCACGCGGTGGTTGGGCTTG
GTACTCAACCTCTTGGTATTCTTTTCTGTATATACCGGCAGCAACTGTTGTTTGTGCGCCTTTCC
TCGCTGCGGGAGTACGTCCACCCTAGGACGCTACCGCTTAGGAGCGGTGTCAATCTATATGGCTA
CACGGTAGCCGAAACCGAAGGGGTACCCCCGACCTACCGGTACATACGCCCCCCCCCTTTCCCCA
GTCACTTAGGGGGTATACGTATATATAGTAACAGCGGTTCCGTCAATCTACCCTGTCTTCCCCCG
CACCTGATGGCCGTAGCGCAGCTCCAAGTACACCAGACTCTTCGT
Found at i:834801 original size:13 final size:13
Alignment explanation
Indices: 834783--834808 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
834773 TTTGTAGCAG
834783 ACATTCTCACTTC
1 ACATTCTCACTTC
834796 ACATTCTCACTTC
1 ACATTCTCACTTC
834809 CATACCGGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTCTCACTTC
Left flanking sequence: Indices 834283 -- 834782
TCAGACAGGCGGTGTTCGCTCCGTATGGTGAGGGTGAGTGTGATCGACTCCCACGCGGTGGTTGG
GCTTGGTACTCAACCTCTTGGTATTCTTTTCTGTATATACCGGCAGCAACTGTTGTTTGTGCGCC
TTTCCTCGCTGCGGGAGTACGTCCACCCTAGGACGCTACCGCTTAGGAGCGGTGTCAATCTATAT
GGCTACACGGTAGCCGAAACCGAAGGGGTACCCCCGACCTACCGGTACATACGCCCCCCCCCTTT
CCCCAGTCACTTAGGGGGTATACGTATATATAGTAACAGCGGTTCCGTCAATCTACCCTGTCTTC
CCCCGCACCTGATGGCCGTAGCGCAGCTCCAAGTACACCAGACTCTTCGTCGTGGTAGAGGCCGC
CTTGTACGGACCCCCGAACCCCCACATAAACCCACCATCACCACGTGGGAGGTGGAAAGCCTCAC
CGCTCCCTGAGCCCCGTACATACGCCCCTACTGGCTTTGTAGCAG
Right flanking sequence: Indices 834809 -- 835308
CATACCGGGGATGGTATCCCTCCCAACACGCTGGTTGGGCCGCATAACCTCCACGTGACCGGAGC
GGCGCAGCGAGAGGCGCTGGGGCCGTTTCCACCAAGGGAACGAACGGCCCGTCCCGGTCCTGAGC
ACACCACTGCGTCTGCAACAGCAGCGGACCCGAGACCTCCTTCTAGGCCAACCGTACACCAGGGA
ATTGGTAAGCCCCATCATGTTGCCGGTAAACCCCATCATTATGCCCGTTGGTGACCAACCAGTAG
GGCAGCAAGGCACGCACGTGATCTTATCCGGCACTTCGTGATCCAAACACCGTACGGTACCGGTA
CGTCGTTTGAAACGGGTCCACACATGGCGTAACGTTGTGAGGACGTGTAGCTGGCTGAGCATCTG
ACATACAAGGGCACGGCGGAACTAACTGTTCCCCTAGAAACCTTCTTGATACGCATTGTGCTCTG
CATGGGCACTCTGCCGTTCAACGAACTTCTACATGCAGCAACGAA
Found at i:841295 original size:27 final size:27
Alignment explanation
Indices: 841257--841308 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
841247 ACTCTCCTCT
841257 ATGTTTCGGAACTGC-CGACAAGCTGCC
1 ATGTTTCGGAACTGCTC-ACAAGCTGCC
841284 ATGTTTCGGAACTGCTCACAAGCTG
1 ATGTTTCGGAACTGCTCACAAGCTG
841309 TCGTTCAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (27 bp):
ATGTTTCGGAACTGCTCACAAGCTGCC
Left flanking sequence: Indices 840757 -- 841256
TCGCCACGCACGGACTCTCATTGGGAACTGTTGCCAAGTGACCACCCGAATTCCGTACATGGAGT
CATGCGCGAGCAATAGCAAAGCTGCTACTGATGCCCCCCACTTTGTGCTTGTCTATAAAGGAACT
CCTGTCCTTGGCCCGCCAATACGTACTGGGGTCTGACAGCGAGCCGCCGGCACCCCCGACCGTAA
TACGTTGGGAAAGGGGGGGGTAGTTACATAGGTTCGCGGCGTTGAGCTTGTTCCTGCTACCTGAC
CGCCCCCCAACCCGTAGGGCTACCGTAATTGAGAAGAGGAGCCCCACTACAGGCCCCACCCCGGT
ATATGGCCGCACATAGTTGGTGTAGGTTCAGTTCAGTATCAGGTTGCGGGGAGGGGGGGTAGTGT
GGTGGTTTCGTCACGCGCGGCCCGGTTGAGGTTGCGTAGTTCGGCGTTATCTACCCGCCTGCTTA
CCGTCATATGGGGTTCGGGGGTACGAATACGGCTCACTCTCCTCT
Right flanking sequence: Indices 841309 -- 841808
TCGTTCAATCCGGTCCTACAAAGGGGGGTAGAGTATGCGGGGGGGTAGTTGTTGTTGCGGTTCGG
AACGTCGTGAGACAGTTCGGTGCATATCCGGTGGGTGCGGTGAAATGCGCTGAGATCGGAAAGAA
CACCAAAGGCGAAAGCACTCTGCTGGACCGGCACTGACACTGAGAGACGAAAGCTAGGGGAGCGA
ATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAAGTGCTGTGCATATCGAC
CCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAAC
TCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATTTAAGTTAATTCGATGCAAAGCGAA
GAACCTTACCAGGGATTGACATGCCGTGAATCCTCCTGAAAGGGAGGAGTGCCTTCGGGAACACG
GATACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCTACGGGTGT
Found at i:843097 original size:14 final size:14
Alignment explanation
Indices: 843075--843107 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
843065 AGGATTTCCC
*
843075 TAACCCCAAAGGAA
1 TAACGCCAAAGGAA
843089 TAACGCCAAAGGAA
1 TAACGCCAAAGGAA
843103 TAACG
1 TAACG
843108 GGATTTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.09
Consensus pattern (14 bp):
TAACGCCAAAGGAA
Left flanking sequence: Indices 842575 -- 843074
TCGCGTCGTTGTGCCTGGGCTGTGAAGGCTCTCAGCCACATGGATAGTTCAATGTGCTCATCAGC
GCCTGACCCGGAGATGATCATCTAAGGCACATTAGCATGGCGTATTCCTCCTGTTCGAACTGAGG
TTTGAAACCGAACGTATCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAAAGTAGATCC
AACTTTCTATTCATTCGTGGGATCTGGGCGGTCCGGGGGAGCCAGTTATCCGCGGCTCCTCTCTT
TTCGAGAATCCATACATCCCTTATCAGTGTATGGATGACTATCTCTCGAGCACAGGTTTCAGTGA
AGTTCAACCTGGATTATGTGGAAAATGGAGCACCGTTTTAACGCATCTTCACAGACCAAGAACTA
CGAGATCACCCCCTTCAACGGTAGGGTGACGGAGGGATCGTACCTTTCGAGCCTTTTCATGCTTT
TCCTGGAGGTCCGTCGGAAGCGGAAATCCATACATAGGATTTCCC
Right flanking sequence: Indices 843108 -- 843607
GGATTTAAACTCCTTTTTCTGTAGGATTGGATCTAGTCAGAAGAATGCTTGGTGTAAAGAACTCC
TTGGTCTTCGACTCGCTGAGTCACTACGACGAACGGTTCCCGGATCGGTGCAATGGGATATTTTT
ATCCATCTCCTAACGATGGGAGCAGGTTCGAAAAAAGGATCTTGGAGTGTGGTTGATTGGACCTG
GAGGAAGAACGCCTCCTTTTCTCTTTTCATCAACGCGAGGAAGGGAAACAAACACACTTTGAGAG
CGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATTGCTCCGGAAAAGGAATCTA
TGGATTCTCTTACAACTCAACTGGTTGGATAGTCGGTGCAATGATTTACTTCACGGGCGAGGTCT
CTGGTTCAAGTCCAGGATAGCCCACGCCGGGGAAAATCGTAGATAGAAAAAGCATCTGAATTGTT
TATTCATGATTCACTTGGCCCCCTGGTAGGGGGATATAGCTCAGT
Found at i:847574 original size:26 final size:26
Alignment explanation
Indices: 847538--847589 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
847528 AGTAAAGAGT
847538 GTATAGGAGATCCAACCCTTGTTCCC
1 GTATAGGAGATCCAACCCTTGTTCCC
*
847564 GTATAGGAGATCCCACCCTTGTTCCC
1 GTATAGGAGATCCAACCCTTGTTCCC
847590 CAATAGCTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (26 bp):
GTATAGGAGATCCAACCCTTGTTCCC
Left flanking sequence: Indices 847038 -- 847537
CCCTGCGGCTTCAGGTCTCTTATTCCAAGGTTGTCTTCTTCCAAACCCTACATGGCGTCGGACAT
CCTGTCGTGTTTCCACTCCACACTTATATACGCAATACCTAGCGAGTGCGGTGTGGCTCCCGTAT
CCTCCAAACCCTACATGGCGTCGGCTGAAGGAAGGGACTCAGGGGAACAGATCTCCACGGAGGGG
GCCTGTAGCTCAGAGGATAAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCC
TCGCCCAGGACCCAAGCATGACGTCAAGTTTCCAGGCCCTTTACCCTTTTGGAAGTTCCATAGGG
AGATTCTGATCGGGGTAGCAGACGCGGTTACAAGCTATGGAACAGTGCGGGTCCTTGTTATGGAA
TCAAGGAATAATCGTCGATTTACTGGAGTGTATACTGCTAGTTGTTCCAAGAGTCATAAACCCAA
CATAGGTTCGTGGCTTGTGCAAGTCTACGAACAAGAGTAAAGAGT
Right flanking sequence: Indices 847590 -- 848089
CAATAGCTCAGCGGTTTCGCGGTCGGCTGTGTTCCGATTACACGTCGTAGGTTCTGATACGTATT
GGGGAGAGCCCTTCCTTTTTCTAACTAGGCTTTGAGCATCAAGCCCGGGCGTGCAATAGGGTGAC
ACGCGGGTAATACGCGGGTAAGTTCATTTGTTGTGTAAGAGAATGCGAGTGTTTACTTGGTCGAT
AAAGCAGCCCCATTGACGTAACGTCGGCGGGGTGGGCGGTGCGTACGCGCGGGTATGATAGAATC
ATGCCAACATCTATGCGCGTAAAGTGCCGAAATCCAAGGTGAAAACACGCTCACGGCATACCACC
TGCAGGCGGTTTGTAGTTCACCGATTCAAGGATCAAGCACGACGGTCATAGATAGAAGGCGGCGC
TTAAGCTTGATCTATCATATACGTATGCATCTGACTCGGTGTTCAGTTCAATCGATAGACAACAA
CCGAAGTATCGATGCTATCAAGAACTGCCCCTACGTACGTATCCC
Found at i:847595 original size:26 final size:26
Alignment explanation
Indices: 847540--847595 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
847530 TAAAGAGTGT
**
847540 ATAGGAGATCCAACCCTTGTTCCCGT
1 ATAGGAGATCCAACCCTTGTTCCCCA
*
847566 ATAGGAGATCCCACCCTTGTTCCCCA
1 ATAGGAGATCCAACCCTTGTTCCCCA
847592 ATAG
1 ATAG
847596 CTCAGCGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (26 bp):
ATAGGAGATCCAACCCTTGTTCCCCA
Left flanking sequence: Indices 847040 -- 847539
CTGCGGCTTCAGGTCTCTTATTCCAAGGTTGTCTTCTTCCAAACCCTACATGGCGTCGGACATCC
TGTCGTGTTTCCACTCCACACTTATATACGCAATACCTAGCGAGTGCGGTGTGGCTCCCGTATCC
TCCAAACCCTACATGGCGTCGGCTGAAGGAAGGGACTCAGGGGAACAGATCTCCACGGAGGGGGC
CTGTAGCTCAGAGGATAAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTC
GCCCAGGACCCAAGCATGACGTCAAGTTTCCAGGCCCTTTACCCTTTTGGAAGTTCCATAGGGAG
ATTCTGATCGGGGTAGCAGACGCGGTTACAAGCTATGGAACAGTGCGGGTCCTTGTTATGGAATC
AAGGAATAATCGTCGATTTACTGGAGTGTATACTGCTAGTTGTTCCAAGAGTCATAAACCCAACA
TAGGTTCGTGGCTTGTGCAAGTCTACGAACAAGAGTAAAGAGTGT
Right flanking sequence: Indices 847596 -- 848095
CTCAGCGGTTTCGCGGTCGGCTGTGTTCCGATTACACGTCGTAGGTTCTGATACGTATTGGGGAG
AGCCCTTCCTTTTTCTAACTAGGCTTTGAGCATCAAGCCCGGGCGTGCAATAGGGTGACACGCGG
GTAATACGCGGGTAAGTTCATTTGTTGTGTAAGAGAATGCGAGTGTTTACTTGGTCGATAAAGCA
GCCCCATTGACGTAACGTCGGCGGGGTGGGCGGTGCGTACGCGCGGGTATGATAGAATCATGCCA
ACATCTATGCGCGTAAAGTGCCGAAATCCAAGGTGAAAACACGCTCACGGCATACCACCTGCAGG
CGGTTTGTAGTTCACCGATTCAAGGATCAAGCACGACGGTCATAGATAGAAGGCGGCGCTTAAGC
TTGATCTATCATATACGTATGCATCTGACTCGGTGTTCAGTTCAATCGATAGACAACAACCGAAG
TATCGATGCTATCAAGAACTGCCCCTACGTACGTATCCCCGTACA
Found at i:848608 original size:16 final size:16
Alignment explanation
Indices: 848587--848618 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
848577 CGTTGCGACC
*
848587 CGGACACTCGTGTGAG
1 CGGACACTCCTGTGAG
848603 CGGACACTCCTGTGAG
1 CGGACACTCCTGTGAG
848619 GAGAAAGCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (16 bp):
CGGACACTCCTGTGAG
Left flanking sequence: Indices 848087 -- 848586
CCCCGTACAACCCCCACAGTTCCCAAAACCGTATCTATCTATCGTCGACTACTAACCCAACCCAC
TTCGTGGTGCAAGAACATGGGGGATGGCATTAGGCCATTCATGTTGAATATGCAACATTATTGAG
CTATAACGACATTGGAATATGGCTCGTTGAAAGTGACCCGCGGAGCGCCCAATCATCACTTGATA
ATATCAGTACTCGTTTCGGGATAACTGTTGTTCCCCGCTCCGTCACTCACGTGGTTCGTGCCTCG
TCCCTTTGGGACCGGCCCACCTTGCTTCATTAATTGGGCGTGAACCCGTACACGGGCCTTGGTTC
ACGTAGCAAGCGCGGCAGAACGCAGGGGTTGGTAGGGGGTACCCCCACGGCATTTATCCCACCCG
GTTCAACTCCATATATACGGTCTAGTAATGAGCCGAAACCAGGGGGGCGCCTACCCTACGTAAGG
GGGACAGAAACTCCCAAAGCTCATGAAGGATCTCGCGTTGCGACC
Right flanking sequence: Indices 848619 -- 849118
GAGAAAGCCGTTTCAGGCCAAGCTTCCGCACGCTTACGCGAGAGACCCGCGGGTTTCTCTAAGAC
GAGCCGGCCATTATGAACAGCTGGATCGTTCTGTTCAGCAACACATCGTTCTTCATGATGGTTCT
GCTGCACGCCTTAAAGCGTTCCCGAAGGTGTTGTGCCCCGCCCACTGGCACACCCTTTGACGTAC
TAACGCACTAGGATCACCGGACTATCCCCGGCCCACCGGCCTAGGCGACAGACAGGGTTGTGCCC
TTCTCCCGGGCCAGGAAATATGTAGTGGTGACAATACTTGATAAGGGAGGCGAGGCACGAACGAG
GTTGTGACACCGGAAGCGTGTTGGACGATACGGCTGGGGACAAACAGCCAACAATGGATGCCACA
CTACGTGGAGCCACTCTCCTGCCTGTCGGTGGGCGAGGAACCCCCGTGAAGAAGAGACGATTGCA
TCGAGTCCCAGCGTGACGAACTCTTACGAGTACGCGCCCTTACTA
Found at i:851235 original size:19 final size:19
Alignment explanation
Indices: 851211--851274 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
851201 ACAACCTTCG
851211 ACAACCAACTCTGTAGCCT
1 ACAACCAACTCTGTAGCCT
*
851230 ACAACCAAC-CATATAAGCC-
1 ACAACCAACTC-TGT-AGCCT
**
851249 ACGCCCAACTCTGTAGCCT
1 ACAACCAACTCTGTAGCCT
851268 ACAACCA
1 ACAACCA
851275 TATAAGCCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 5 0.14
19 25 0.71
20 5 0.14
ACGTcount: A:0.36, C:0.39, G:0.09, T:0.16
Consensus pattern (19 bp):
ACAACCAACTCTGTAGCCT
Left flanking sequence: Indices 850711 -- 851210
TGCAGTAATCTTGAATAAAAATCCTACAGCGATAAATAGAATCCCCATCACAATACCACCAGATC
GAGCACCGAACAAAGTGATTTCATATCCGGTCATCATATAGGCTAATTTCTCGAAGTGGGTAACT
CCAGTAGACCCATAGATCATGGAACAAATGGGGTAGGTAAAGTCTATACGTATAGACGTGAACCC
TCCCCCGTAACCGTACGTGCGACTCTCACCGCATACGGCTCGCACTGATACTCCGCCCACCCTCG
CCACCCCACCTCAATAACCGATTCGATTTTGTTGTTTGTACACCGTATACAGAAGCTCCTCGATC
TCCCCACGTGACGTACACCACCCTCCAATAGAACTTGCCCCCACCCGAAGGTTCCGCACTATGGG
CTACGCCAGCCAGCCAGTATTAGTCATTTGCTTACGCTAGCCTCCCTCCAGTAGCTCCTCTCTCC
CCCCCGGCCGGACGGATATGTTGTCTTTGCTGCCTACAACCTTCG
Right flanking sequence: Indices 851275 -- 851774
TATAAGCCACGCCATAGGGTACCAACTGAGGGGCCGGATGCCATAGGTAGGGTGGTGGGCCAGGG
ATAGTGTAAGGTAGGGTGGTGGGCCGGGGATAGTGTATTTGCGCCATACCAACATTCTGCGTGTT
GCCCTTGTACGGGGGGTACCCCTTCCTTCACGCCGTAACTTACTTACCACCAACCCCTGTCCCGT
ATATGTATACGTTGGTTGTTGTTGCGGGTACGACGGTGATCAAGGATGTGGTCGGGGAGTGCCCG
CCTGTACAAGACCACGACGGGGAGAGCAGCATGGTACTAGTAGTGGCGTACGTGGGGGGTATGGT
ACGTCAGGAAAGGTACGTAATGGTTCGGTATTTCCGGGTGGCAACTACAACAGCGGGATAAGTAT
GCCAACGGGAAAGTACCTAGCACTGGGACTCCCTGGGACTCAACTACTAGGATGAAAACGAACGA
CCCGGGGAACCCTACCCTATCACCCTTACCCCAACGAGCACCTTA
Found at i:851278 original size:34 final size:36
Alignment explanation
Indices: 851215--851287 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 36
851205 CCTTCGACAA
851215 CCAACTCTGTAGCCTACAACCAACCATATAAGCCACGC
1 CCAACTCTGTAGCCT--AACCAACCATATAAGCCACGC
851253 CCAACTCTGTAGCCT-A-CAACCATATAAGCCACGC
1 CCAACTCTGTAGCCTAACCAACCATATAAGCCACGC
851287 C
1 C
851288 ATAGGGTACC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
34 19 0.54
35 1 0.03
38 15 0.43
ACGTcount: A:0.33, C:0.40, G:0.11, T:0.16
Consensus pattern (36 bp):
CCAACTCTGTAGCCTAACCAACCATATAAGCCACGC
Left flanking sequence: Indices 850715 -- 851214
GTAATCTTGAATAAAAATCCTACAGCGATAAATAGAATCCCCATCACAATACCACCAGATCGAGC
ACCGAACAAAGTGATTTCATATCCGGTCATCATATAGGCTAATTTCTCGAAGTGGGTAACTCCAG
TAGACCCATAGATCATGGAACAAATGGGGTAGGTAAAGTCTATACGTATAGACGTGAACCCTCCC
CCGTAACCGTACGTGCGACTCTCACCGCATACGGCTCGCACTGATACTCCGCCCACCCTCGCCAC
CCCACCTCAATAACCGATTCGATTTTGTTGTTTGTACACCGTATACAGAAGCTCCTCGATCTCCC
CACGTGACGTACACCACCCTCCAATAGAACTTGCCCCCACCCGAAGGTTCCGCACTATGGGCTAC
GCCAGCCAGCCAGTATTAGTCATTTGCTTACGCTAGCCTCCCTCCAGTAGCTCCTCTCTCCCCCC
CGGCCGGACGGATATGTTGTCTTTGCTGCCTACAACCTTCGACAA
Right flanking sequence: Indices 851288 -- 851787
ATAGGGTACCAACTGAGGGGCCGGATGCCATAGGTAGGGTGGTGGGCCAGGGATAGTGTAAGGTA
GGGTGGTGGGCCGGGGATAGTGTATTTGCGCCATACCAACATTCTGCGTGTTGCCCTTGTACGGG
GGGTACCCCTTCCTTCACGCCGTAACTTACTTACCACCAACCCCTGTCCCGTATATGTATACGTT
GGTTGTTGTTGCGGGTACGACGGTGATCAAGGATGTGGTCGGGGAGTGCCCGCCTGTACAAGACC
ACGACGGGGAGAGCAGCATGGTACTAGTAGTGGCGTACGTGGGGGGTATGGTACGTCAGGAAAGG
TACGTAATGGTTCGGTATTTCCGGGTGGCAACTACAACAGCGGGATAAGTATGCCAACGGGAAAG
TACCTAGCACTGGGACTCCCTGGGACTCAACTACTAGGATGAAAACGAACGACCCGGGGAACCCT
ACCCTATCACCCTTACCCCAACGAGCACCTTACCCGCGCTACGTA
Found at i:851352 original size:29 final size:29
Alignment explanation
Indices: 851319--851376 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
851309 CGGATGCCAT
851319 AGGTAGGGTGGTGGGCCAGGGATAGTGTA
1 AGGTAGGGTGGTGGGCCAGGGATAGTGTA
*
851348 AGGTAGGGTGGTGGGCCGGGGATAGTGTA
1 AGGTAGGGTGGTGGGCCAGGGATAGTGTA
851377 TTTGCGCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.19, C:0.07, G:0.53, T:0.21
Consensus pattern (29 bp):
AGGTAGGGTGGTGGGCCAGGGATAGTGTA
Left flanking sequence: Indices 850819 -- 851318
TAATTTCTCGAAGTGGGTAACTCCAGTAGACCCATAGATCATGGAACAAATGGGGTAGGTAAAGT
CTATACGTATAGACGTGAACCCTCCCCCGTAACCGTACGTGCGACTCTCACCGCATACGGCTCGC
ACTGATACTCCGCCCACCCTCGCCACCCCACCTCAATAACCGATTCGATTTTGTTGTTTGTACAC
CGTATACAGAAGCTCCTCGATCTCCCCACGTGACGTACACCACCCTCCAATAGAACTTGCCCCCA
CCCGAAGGTTCCGCACTATGGGCTACGCCAGCCAGCCAGTATTAGTCATTTGCTTACGCTAGCCT
CCCTCCAGTAGCTCCTCTCTCCCCCCCGGCCGGACGGATATGTTGTCTTTGCTGCCTACAACCTT
CGACAACCAACTCTGTAGCCTACAACCAACCATATAAGCCACGCCCAACTCTGTAGCCTACAACC
ATATAAGCCACGCCATAGGGTACCAACTGAGGGGCCGGATGCCAT
Right flanking sequence: Indices 851377 -- 851876
TTTGCGCCATACCAACATTCTGCGTGTTGCCCTTGTACGGGGGGTACCCCTTCCTTCACGCCGTA
ACTTACTTACCACCAACCCCTGTCCCGTATATGTATACGTTGGTTGTTGTTGCGGGTACGACGGT
GATCAAGGATGTGGTCGGGGAGTGCCCGCCTGTACAAGACCACGACGGGGAGAGCAGCATGGTAC
TAGTAGTGGCGTACGTGGGGGGTATGGTACGTCAGGAAAGGTACGTAATGGTTCGGTATTTCCGG
GTGGCAACTACAACAGCGGGATAAGTATGCCAACGGGAAAGTACCTAGCACTGGGACTCCCTGGG
ACTCAACTACTAGGATGAAAACGAACGACCCGGGGAACCCTACCCTATCACCCTTACCCCAACGA
GCACCTTACCCGCGCTACGTAAAGGTCGCAAGCAGCTCTATCTGAAGTCCGCTTTGGCGGTACAC
ATGGCACCCTTTGTCGTCACTGGTCTGTCGTCCCGCTCTTTCTGT
Found at i:853953 original size:19 final size:19
Alignment explanation
Indices: 853929--853966 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
853919 GATGACGACC
853929 GAATTGTGTTATGTGTTAT
1 GAATTGTGTTATGTGTTAT
853948 GAATTGTGTTATGTGTTAT
1 GAATTGTGTTATGTGTTAT
853967 ATATGTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (19 bp):
GAATTGTGTTATGTGTTAT
Left flanking sequence: Indices 853429 -- 853928
GCGTTCATGGGTTTATGTATGTACATCTCGTGTTAGTGCCTTTAAGGTAACACAAAGCAGCTCTG
CGAATGACGCTGCTGGTGAAGCGGAACAAGTATGCTTATCTAACTCACTCCGACCTTATGATACG
CACGCAATATGGAGGCGTCATCCAATTAGACCGATACGAATGGCGCCCCATGTATCGCCTGTGCG
ATACCGTTAGCCCCCGGCAAAGTCGGAATGCGACCGGCGCACTTGAACCAACCTGTGCGACGTGC
TGCTACTCCGTGCCATCCACATATGTCTATCACTGTCTGTGCGATGACCGAAAACACGCGCTACG
TTACTCACTGGGAGTCCCAGTATCGAGTGCTTAAGCGCCTGGAAAATGTACACGGAATCGTGGGA
TGTTGTTGGGAAAACCAACTGCTACTCCAGGTGAAATCATGCTTCGATAGAGTTCCTCATGAAGG
GCTTCTTCAATATATATGTGGTGCGCGTGTTATGTGATGACGACC
Right flanking sequence: Indices 853967 -- 854466
ATATGTATATGTATGCAGCAGATATAACACGACTTGATAAGCGGACCGTGAGGTAACGAATACAC
CGTTAGAGAGACCGGAATCCCTCAGGGCGGTGCAAGCCAATCCTGTTTCGTCGTGAGCCTGAACG
CGCCAGGATCATAAACAAGAGAGGAGAAAGATGTACTATTGCCGCTATGCCGACCACATCATTGT
CGGCCTACACAAAGAAGAGTCGTTTGATGGTAAGCATGAAACAGAAACTTCAGAGCATATGGTAG
TACGCACTTGGGCCTAGAAAGTGGAGCAACTCAAAGCCGGAACGTCGGGTGGAGAACCAACATAG
CCGGCAACTACCTTACCCTTACCAGGGGATGGTGGGCCCATACGGTACGAAGTGCCCCGTTACGT
ACGACGCCGGTTGGCCTATTTATTCGTTATGTGGCGAAAGCAGAAGGCGGAAACCTGCATTCCAC
CTGCTATATGGATATGGTATGGTATGGTATGGCATGTGTGGGGCT
Found at i:856244 original size:22 final size:22
Alignment explanation
Indices: 856216--856259 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
856206 TATTGATAAG
856216 GTGTTCAGTACGTATCAATACA
1 GTGTTCAGTACGTATCAATACA
856238 GTGTTCAGTACGTATCAATACA
1 GTGTTCAGTACGTATCAATACA
856260 ACTGCTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (22 bp):
GTGTTCAGTACGTATCAATACA
Left flanking sequence: Indices 855716 -- 856215
CTTTGGGCGGGGAATGAACCCTCGCGTAAACGGGTAACGAACTACATGAGCGCAGCGAGTTTTCC
AGTCCAACACTTCCAGGGGAACGAGCGTATCATGGTAACGCCCCGCGGTTGTTGGGGAGAGGGGG
AATGAGCGTATCGAGCTTCCCTGCCCTGTGCGGACGGGGAGTGTCGAGTTACCCCATGGTAACGG
TTTACGTAGTGAGTTACCCTGCCCTGTGCGTAGGAGACCCCCTTTCTAGTGCACAACCCGGGATG
TCGGGGAACGAACTACATAGGTCCGAACTACGCCTCAGTGTACTCCTTCCCGAAGGGGCATCTCC
CAGGATAGCTCCTTCGTCAGTCATTGACCGCACGGAATCACCCCTGCGTAGCACATACGGTTTCA
CAGTGACGGTTGGTGGAGTCATACGTAGGATAGAACGGTCTCCAGTCAGTTTTATCCATTGCCAG
ATGGAACATTCATACCCCACCCAGAGCCGGCAGCCTATTGATAAG
Right flanking sequence: Indices 856260 -- 856759
ACTGCTTTGATTCCCACAATCAAGTGACGACGTGTGGTCTTCAGCACTATGTTGGTGATCTTAGT
ACGGTTTCTAGTGGACAGGAAGGGACGACCTGCCCCGTTCGAAAGGGGCGAACTGCCGTACATAC
GCCCCCCAATTGCCTCTCTAACTAGTTAACCGTCCCAATAACGAGTTGTGTATCCGGGGTGTGGG
GGGAGAATACGGGTTTGGCGCCTCTTTTCTCAACCGCCTGTAAACGCAGTTCCAGTGAGTATCAC
CATTTCTCTTCCTCTTCTATCGCCCCCCTATATAGCTAGTTGTGCCGCCGTGTGTTGCTTCAGAT
TCACCCAGTACCGTATGAACCAGTCGGTGCAATGTTATCAAGGATCAGCCAACCACGTTGAGGTC
TCCATTAGTGCGTACCGGCCTTCACGCTCTAGTTCAATTCACCTCTATCGTGGGCTATCCCCTAG
CGACAAGCACATACGGTATCAGTCGATCGCCGCAACTGCAGTAGA
Found at i:858057 original size:4 final size:4
Alignment explanation
Indices: 858050--858089 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
858040 TGCGTCAATA
*
858050 TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT GGGT TGGT
1 TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT
858090 GGGGGATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.53, T:0.47
Consensus pattern (4 bp):
TGGT
Left flanking sequence: Indices 857550 -- 858049
GTAGCATTGTCACTGTAGACTTCCATTACTCACTCGGTCCTTCATAGATAGATAGCAGGAAGACT
CTAACCCATCCTCTGATCATTATGTAACCCCGACATGCTGGCTCGTTATTCCCACCATTTCCAAA
GTCAATTCTCCCAAGAGGCTGTACTCAACGTTCTACGGTTGAGTTTCCAATCTAGACAATACCAT
AAAACACAAGCCAGCACTTATGTCACGTAGGGGGTTGTGGAGGGATTGCATCTGGGCAATGGTCA
TGATCAGCACCCTGATCAGCAGCGTGGAAAATGAGCATAGCACGTTTTCGACGTCCTGGCAGACG
TGGGAGCGTTGGGTTTACTGCAAGGCGGCCCCTCCCTCCCCTCTATATACTGCTGCACGAGCGAT
TCTCTTACGTAGGCCTTCGTGTGATTCGTAGCGGGTATATATGCAAGTAAGGCTGGCCCGGCTAC
GTGCTGCTGCCTGCCTGCCCTGCCCCTGCTTGCTATGCGTCAATA
Right flanking sequence: Indices 858090 -- 858589
GGGGGATTGTGTTGGGTTGTGTACCCAGTGCTTGTAACCAGTAAGTGACCCTGTGCTAGCGGATG
GGGAGTTGGTATGCCCGGCTACGTGCGGAAAGCGAAGGTAGCCTGATACGCCCTGCGATCATCAG
GAAGCGGAATTGACCAGTTGCGAACCAGTTCCATCGACGGAACAAACACGTTCTATTCATAAATG
CTCCTCCACCTACTGCTTCCGTCTAACGCACCTGTCTCTCGGAGGAGGACAGCCCGTTCTATATA
GTGTATTGTTATTGGTTGGTCTCGCTGGCGTACGCGACTTGTCGCTGGTAATTGACGTAGCAACT
TGTGCATTGTAAAACAACTTGCCTACACGTTCTTCCCGCTTCGCTACGTAACTCCGCCCACAACG
ACAGTTATTGACGTACGGTGGGCACTCGGTTTCGACAGCGAAGGATTCCCAGCTCGCTCGTTCGG
TAACAGAGGGCACACCCCGTCTGACAGAAGTTGCCCTCATCGACA
Found at i:859559 original size:28 final size:28
Alignment explanation
Indices: 859504--859559 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
859494 AGCCGCTTCT
* *
859504 TGACGATGAAGTCGAACGGACCTTAGGG
1 TGACGATGAAGTCGAACGCACCTCAGGG
*
859532 TGACGATGAAGTCGAACGCTCCTCAGGG
1 TGACGATGAAGTCGAACGCACCTCAGGG
859560 ACCTTAGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.34, T:0.18
Consensus pattern (28 bp):
TGACGATGAAGTCGAACGCACCTCAGGG
Left flanking sequence: Indices 859004 -- 859503
CCGGGTTGTGTACCCCGCAAAGCAGGGAGTATTCAGTCCGTAGAAGCGGGGAATATCTGCTTGTT
GGGTTTGTTATCCTCTTCGTTAGGACGGGTACCCAAGGTAGTTCGGGCCGACTGGCACGCCCGGG
GAAGAGAGAACCGAAGGGGAGTTTCCCCTTATCGTGCTGGTTTCCGATCGGCGCCCCACCGTACG
TCAATAAATAACCGCCCACCCAGATGCTTTCGCAATGGGTTCAGGATAGCAGGTGCCACGTCTAT
CCCGTCTGGTAGTTGGTGTTCTGACCCTCACGTGTGACGGCAGCCGGAGACCGGAGACTTGAACA
TCGAACTACCCTTCGATGCGCAACATCGCCCGCTAGGATCGGACGGCCTGCTTACGCAGACAATG
CTTGCAGCGCCTTACACCGCTGCCTCCAACACGCTCCGGAAAAAACCCTTCGCTCACGGATCACG
GGCTAGACAAGCGAAGCTGGCCTTACGTAAGCCCTAGCCGCTTCT
Right flanking sequence: Indices 859560 -- 860059
ACCTTAGGGTGGAGCCGTAGCCTGGGACAACCATCCTCTCGGGGTGGGGTGGAAAACCCACGATA
TAGGTAGCAGGTTCGGCCCCACTTTCCATACAAGGTTGGTGGTGCAGTGGTGCACTTGGGTTACC
AGCAGATGCCCCTAAGTAATAGAGAGAGACAAGGATGGCCGAATCGAGTAGAAGCGTGGAGGGAA
GGAGGAGAACCCCTCATAAAGCATGCGATAGGTCGAAGCCCCCCGAACTACGAGCTTGAGACTAT
CCGCAGCAAGGTACAGATCCGTAACTAGCCTGGATTTCATATGGTTTATCCGCTACCACCTCCAT
CTACCGGACCCGAACGACGTTCATTATCGAATCTGCGCATCCGGGGTTAGTTAAGTTAAGTTATA
TATGTGAGGTGAGGTGAGGTGAGGTGCCGAGTGAATCGATACACGGTCATAGCGGTGAAGCGCGG
TATAACGGTATGAAGGAAAAAAGCCGCACCCTGATCAGCAGCGAC
Found at i:860673 original size:29 final size:31
Alignment explanation
Indices: 860640--860702 Score: 103
Period size: 32 Copynumber: 2.1 Consensus size: 31
860630 ACTGTTCTTA
860640 CGTAAAACAGTAG-AA-ACCCTTCCACCTGG
1 CGTAAAACAGTAGAAACACCCTTCCACCTGG
860669 CGTAAAACAGTAGAAACCACCCTTCCACCTGG
1 CGTAAAACAGTAGAAA-CACCCTTCCACCTGG
860701 CG
1 CG
860703 GCACGGCCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 13 0.42
30 2 0.06
32 16 0.52
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.16
Consensus pattern (31 bp):
CGTAAAACAGTAGAAACACCCTTCCACCTGG
Left flanking sequence: Indices 860140 -- 860639
TTCGGCTGCTCCCGACCGCCTGAATGCCGTGTATCATCTGAGCATGAAAGTCGAGGCGTATCGTA
CGCACCCCCACCGTTATGTGGGGGGGTGGGTGGCGTTAACCCTGGCGTATGTGCCGTTACTATGT
GACGGATAACACCGCGGGCAACGTAGTTTTCGGACCACCGCCACGTAGCAGTTATTGACGTACGG
TGGGGGCCTGTGAACTTTCCAAGATACGTACCGAAACAAGCTGGGCACCAGGAAGGAGTATGTTA
CTCGTAGAGGCTGGGCCAGCCGTAACGTGGGCCATCACTTTACAAAGTTATGAAGAGCGATCAGT
CCTACCGGAACAGGGAAGCGCTGCACATGGAGTGAGCATTCAGGCCACTTCCAGCATGGGAGTTC
CCCACATCCCACACACTGGGCTTCAGCTGATGATTCCCGTTACACGGTTCTTCCATCCATTAGTA
CGTCATGCCGTACTAGTCACGCAATCGGAAGACCCACTGTTCTTA
Right flanking sequence: Indices 860703 -- 861202
GCACGGCCCTGGGTTCTGTTGCAAAGGCCAGGCCAATCCCAACGACTTTGAGGTTGGTTGTTACA
CCGGCCAGTTAGAAGAGGAGGTGCCGTACATACGTAAAGGCACAGCTTTTCGCTCTCAACTGTCA
GTTATTCCGAGGGCGGGCGAACATGTTGGGATGTTAGTTGTTGTTTGGACGTTGGCAGACCTAGA
CTGTTAGCGTGTTGGCGATAGGGAACAGCACTTTTGTTCCTGTCGACCTCCCGGCCGTATGTAGG
CCCTGGAAGTATCCCATTTACGCTGGAATACGAGCTGCGCGAGTTATCGCTCGTCGATGGGCGCA
AGCGTGGCAAATTCCCCTAGGAACTGGAAGCAAGCGTAGCGAGTTACCCCGTGGGATGGGGAACA
CCTTCACCCAACGTGAGTCATCCCGTGCAGTTACTCGTTACGGAATTACCCAGTCTTTGTTGGAC
AGGGAACGATCATGGTAACGGAAGCGGCGCAGTGACCAGATGAGC
Found at i:862816 original size:32 final size:32
Alignment explanation
Indices: 862775--862838 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
862765 TGTACTGGTT
862775 GTTTCCACGGCACATTCTGTAGCTTTATACCC
1 GTTTCCACGGCACATTCTGTAGCTTTATACCC
862807 GTTTCCACGGCACATTCTGTAGCTTTATACCC
1 GTTTCCACGGCACATTCTGTAGCTTTATACCC
862839 CACCCACGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (32 bp):
GTTTCCACGGCACATTCTGTAGCTTTATACCC
Left flanking sequence: Indices 862275 -- 862774
TAACGGTCCGCCTCAACCTCAGGCAATCGCCGAACCTGGTATTGGGGGCCCACCGAAGGCCTCAA
GAACATGGGCCGCTACATCAAACGATGATTTCTGATCTGATGGAACGCTCTTCTTTCTTCTATAT
AGTTGTTGTTCGGCGGGCACCAGAATGTGGTTTTTACCTCAATAGACGGCTCCAACTTCCTCGTT
GCTTTGTGTCCATATGTAGACGTAATTACTCACTCCATCGCACGTACGCCCCACCGTACGTCAAT
AACAGTAGCGGTTTCTTTATTCATATCATCATACACGGCCGTCATTGGAGGGGTTCCCGCCGATA
CACGCAAACCGCATTCTCCACTAATCCCCTTATGCCGGACGCTGCCCAAGGTTGGGTGTGAACAG
CCCACTAGATATCAGGCTATTAGTTCACATCCATGCTTTACAGACAGTAAGCCAGGTCATTTCCA
GTAAACCAGTAAAGTGTGTCGTACAGACCGGCACTTGTACTGGTT
Right flanking sequence: Indices 862839 -- 863338
CACCCACGCCCGACGTATAAGGCGCGTCGCGTGGCACATAAGCACAATGAAGGAATCATCGAGGC
AGTCTTACCGTCCTAGGCCTGTCAGCAGCAGAGGTAGTAGTTTATATACTACAATACAACACAAC
AGTAGATTCAGTATATGGATATATGACGGCAGTTCATCACCGTTCAGTTGATGTTGGTTACTCGG
AAGCCCGCGTTGTTACCCGATTCGCGGCACCTCACCTCACATATATAACTAACCCCCCCGCCTAC
GCGGCCGGTTCTTTCTATACGTCAACGTCAACGTCAAGTATAGATATATATATATATCTATATAG
TATGTGCTTCCTCGCGATGCCTTCTTACGTATAGGTTACCCTGCGTAAACTGCCTAACCCAGACC
ACCAGGATGGCATCGGGGTGTCATACGCAGTTTCGTACGCAGAAGTGCATACATGGTGCGCATCC
CGGGACTTGGTGGGCACCGAGTACCGACGTCTGGCTATATAGGGT
Found at i:866787 original size:42 final size:42
Alignment explanation
Indices: 866728--866811 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
866718 TACAGGGTAC
866728 CGCAACAACGACGAAGCGTGCTCCCATAGCCTCGGCCGTCTG
1 CGCAACAACGACGAAGCGTGCTCCCATAGCCTCGGCCGTCTG
866770 CGCAACAACGACGAAGCGTGCTCCCATAGCCTCGGCCGTCTG
1 CGCAACAACGACGAAGCGTGCTCCCATAGCCTCGGCCGTCTG
866812 GAGAAAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.38, G:0.26, T:0.14
Consensus pattern (42 bp):
CGCAACAACGACGAAGCGTGCTCCCATAGCCTCGGCCGTCTG
Left flanking sequence: Indices 866228 -- 866727
GGAGGAGCTGGAAGAGAGACTGACCAAGATGTCTTACCGATACCACGCTAGAACCAGAACGCCCA
CCTTCATAGGGCTAGCCGCATCCAGATACAGATACAGGTGCAAGCGGTGGCTCAGTTATTGACGG
TGGGGTCGTGGATCGACCTCAGTACGGTGGTAATGGAGCGGATACTAGCAGCCCGAGGGTTTATG
TGCGGATGCAGAATCCCCTACCTCTGGCACCTCCTCGGACCCATAGCCGGAGCACGCAGGGTCGC
AAGCGGCTGACCACCGTTCGTGGGCTGGAAGGCCCTGGCGTAATAGGGGCAACAGGGACTAGTCG
CGGATCCGTACTACAATGAGGCGGAAGACGGACCCAATTTCGGGCTCCCCTATGGCGGCTGTGGG
GGGGAATCCCCTCCCCCGGCACGTACGACGCAACAGTCCGAACCCGGACAATGGCACTATAAGGT
GGTGCAGCGGGAGCCTAGGTGCCATCATAAACCGATACAGGGTAC
Right flanking sequence: Indices 866812 -- 867311
GAGAAAATAAATAATCCGTCGGTGGTAACGCGCGAACCCTGGCACGTAACCTCTTTCAACTAATG
AACGCGCGTACCGTACATACGGTCCCGTTCTGTCCGTACCGTACCGTACCGTACCGTACATATAT
GGTGGTGGCTTGGCTGGCGGCGCTGTCTCCGGCTGAACTGCGAGGTTAGCACGCCACAATATGGT
ACGGTTTGTATAGGTTACGCCGCGCTGCGTTTACAGGGGCCGTACAGTGCGGTGCTTGGGTATTT
ATGTACATGCTGGGTCGCACGGGGCAGGATGTTCTCTGCGCCGCTTCATAACAGCTTGTACGGTA
CGGGGCATGATTTTCGGAGGGTCACGGGTCGTGTACCGAAATCCCTATATCGATACCAAGGGCAG
AAGCACTCCAACACGCCACGAGCGATGCAGTTACTCGCTGGGTGGGCGGTGGGACCAGTAACCGG
GGCTGGTTATCCCTATTGGAAAACATGGTTTATTTGGATAGTCAG
Found at i:866920 original size:5 final size:5
Alignment explanation
Indices: 866910--866935 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
866900 CCCGTTCTGT
866910 CCGTA CCGTA CCGTA CCGTA CCGTA C
1 CCGTA CCGTA CCGTA CCGTA CCGTA C
866936 ATATATGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.19
Consensus pattern (5 bp):
CCGTA
Left flanking sequence: Indices 866410 -- 866909
CCGAGGGTTTATGTGCGGATGCAGAATCCCCTACCTCTGGCACCTCCTCGGACCCATAGCCGGAG
CACGCAGGGTCGCAAGCGGCTGACCACCGTTCGTGGGCTGGAAGGCCCTGGCGTAATAGGGGCAA
CAGGGACTAGTCGCGGATCCGTACTACAATGAGGCGGAAGACGGACCCAATTTCGGGCTCCCCTA
TGGCGGCTGTGGGGGGGAATCCCCTCCCCCGGCACGTACGACGCAACAGTCCGAACCCGGACAAT
GGCACTATAAGGTGGTGCAGCGGGAGCCTAGGTGCCATCATAAACCGATACAGGGTACCGCAACA
ACGACGAAGCGTGCTCCCATAGCCTCGGCCGTCTGCGCAACAACGACGAAGCGTGCTCCCATAGC
CTCGGCCGTCTGGAGAAAATAAATAATCCGTCGGTGGTAACGCGCGAACCCTGGCACGTAACCTC
TTTCAACTAATGAACGCGCGTACCGTACATACGGTCCCGTTCTGT
Right flanking sequence: Indices 866936 -- 867435
ATATATGGTGGTGGCTTGGCTGGCGGCGCTGTCTCCGGCTGAACTGCGAGGTTAGCACGCCACAA
TATGGTACGGTTTGTATAGGTTACGCCGCGCTGCGTTTACAGGGGCCGTACAGTGCGGTGCTTGG
GTATTTATGTACATGCTGGGTCGCACGGGGCAGGATGTTCTCTGCGCCGCTTCATAACAGCTTGT
ACGGTACGGGGCATGATTTTCGGAGGGTCACGGGTCGTGTACCGAAATCCCTATATCGATACCAA
GGGCAGAAGCACTCCAACACGCCACGAGCGATGCAGTTACTCGCTGGGTGGGCGGTGGGACCAGT
AACCGGGGCTGGTTATCCCTATTGGAAAACATGGTTTATTTGGATAGTCAGATGTACGCCCCTGG
GTCGTCGACTCCATCCTCATGAGTACTATATGATACGGTAAGCAACCGTACTACGTTTAATGATA
CAACCCCAAGAGATACGAGCATCTATCGTTATATAGATACGATCA
Found at i:868417 original size:16 final size:16
Alignment explanation
Indices: 868366--868418 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
868356 GGTGTTATGG
*
868366 CTGCGTGGTGCTGACA
1 CTGCGTGGTGGTGACA
* * ***
868382 CTGCGGGGTGGGGGTG
1 CTGCGTGGTGGTGACA
868398 CTGCGTGGTGGTGACA
1 CTGCGTGGTGGTGACA
868414 CTGCG
1 CTGCG
868419 GATGTGGCAT
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.08, C:0.21, G:0.49, T:0.23
Consensus pattern (16 bp):
CTGCGTGGTGGTGACA
Left flanking sequence: Indices 867866 -- 868365
GCTATACGCCACCACGCGCACTTCACAGAAATTACACAGCCGGCTACCCCCACCTCAATAACCTA
GTCTATCGCACAGTTACGTTATACTATCTGTCTCAACAACTCTTCGAGACGAGTATTGTTGGGTC
GAGTAGTTACTGAGTGAACCCTGTCTTCGATGGGGCACACCCAACTCCTGCTGAGTGAGCCCTGT
TTTCGATGGGGCACACCCGCCGCATTCACCTTATACGGTCTGTCCAGCCACCTCGAACTAGTACG
ATACCTTGGTCTGTTGTCCGCCTCACAGTATAGCTCGAACGCCACTACGGTCTGTCGTCCGCCTC
ACAGTATAGTTGGCTCCTCCGGCTGAGGGGTTGTGAACCCGATATTTCCGGGATAGTCCCCCAAC
GTACGTAATATGGCGTAAGTATCGGCCTGTTGTGCCTTTCAGTCGGTTATGCAATCTCGTCTTCG
GTCGGGGTGAGTCTGCGCGTGCTTCGTGAACTACCGGTGTTATGG
Right flanking sequence: Indices 868419 -- 868918
GATGTGGCATGTGTTACGGACGGTGTAAGTGATGAAGCGAAGCGCGGCTCAATTGGCATGTGCTA
CAGGAACACTGGCACGAATACGTGTGCCTTTCTGTAACGGAGTTGTTATTGATGTAGGGTGCGCC
GGGAAACTACGATACTAACTGTTGAGTCACTGTTGAGGGAGCGGTTATATAGAGAGGTCCTACGG
TTGCCTGCTCCCCCGGTTCACGTTGTAACAAACCACTCGTGCTTGTTTGTCGAGGGTGTTCCCCT
GACGGTACGGAGGTAACATGGTGGGGTAGACACCTCGAACTGGTGTTTACGTAAACCCCATGTTC
TGTTGCGAGCCCAGCGTTTAACGGCCGCTTCGGAGGGGCATCCCCATCTGCAGCTAGCCAAGCGG
CGACTGAGCGGGCTGCACGTAAGCACATCACCCTCACATTAGTCTGGGCCAGTTTTCATATGCAC
AGTGCTGGCCATATAACGAACGACGTGATTGTTTCATTGACCCTT
Found at i:869710 original size:14 final size:14
Alignment explanation
Indices: 869691--869724 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
869681 GCAACCGCAC
869691 ATACGGTTATCGGG
1 ATACGGTTATCGGG
*
869705 ATACGGTTATGGGG
1 ATACGGTTATCGGG
*
869719 CTACGG
1 ATACGG
869725 AACATCGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.15, G:0.38, T:0.26
Consensus pattern (14 bp):
ATACGGTTATCGGG
Left flanking sequence: Indices 869191 -- 869690
CCAACTCAATACTTGTTGTGGGTGGATACGCAGATATATGTATGGTTTAACTCGAATAGGAACAC
CATATATCAGAGTTACTTGATGTGTAGTTCTTTATGGCATACCTAGTCGGGGGGAAAGAGTACCC
GGACACCAAGACTAACTAAGGCGTGAGCTACCTTTCTCGCACAATTATGTACGGTACGTAATTCG
ACCGTAAGCGTATGGGAGCACGACACGTTCTTCCACTCAAGCGCGGACCTCTTGTTTGTTTGGAT
TTGCAGTATATAGAGTAGGGGTGCCAGCCCGGGTCGTACTTAGTGCTGCCCGTGCACAGTTATTG
ACGGTGGGCCGTAGTGCCGCGTACTCAAGCGGTGTCAATGTCAGGTGTCGAAATGTATCTGTGCC
TCTATCATATGGGAGGGTTTGCTAGAGTATGGCACGAGAGCCATATATCGTGACACCGTGCTTCA
CATATGAAGCCTTGTCTCTCTCATTTACCAGTACAGCAACCGCAC
Right flanking sequence: Indices 869725 -- 870224
AACATCGCTCGTCCCGTAGTTATTTGGAATATCAGTACATTGGGGTTGCGGTTATGTGGAAGTAC
AACCGTGCGCGTTGGTGGTATGTCGCCTACAGCGCACACATATCGATTTATGAAGCCTTGTCAAC
AAATGCCCGCGTAAAGGAGTACATATGAAAAGGCAGTTCTGATGATATTGAAACAACATGCAGCG
AGTACATATGAAAAGGGTTCACGGCTACCGCGTTATTGGGATGGGCCATATGCAGCAGTACAGAT
GGTGGTTATGCGTCAGGTGTGAGATGCCCTCTTCGGAAGATGATGCAGTGAACCGTTTCGTACAT
ATCCGCAGCAAGTGCCCGCGCCCCCCGCCTATGTAGTTGTTGTTGCTGGGTTGGGTTGGGGAGTT
GGATTGTGAGCTGAGCCCTAGTAGTTAACCCCCTGTACACTAACATCAACAACTAAGTGGGAGTT
GATCGAATTTGTAGATACGACAGCGTACATATGTCGGGTAACCGG
Found at i:870867 original size:65 final size:63
Alignment explanation
Indices: 870764--870892 Score: 231
Period size: 65 Copynumber: 2.0 Consensus size: 63
870754 ACCCAAGTTA
870764 GTTGTTGTTGCATACAGGTAAGGTAAGGTAAGCCCAGTAACTCGGCTTTCCACATCTGTCTCTGT
1 GTTGTTGTTGCATACAGGTAAGGTAAGGTAAGCCCAGTAACT--GCTTTCCACATCTGTCTCTGT
*
870829 GTTGTTGTTGCGTACAGGTAAGGTAAGGTAAGCCCAGTAACTGCTTTCCACATCTGTCTCTGT
1 GTTGTTGTTGCATACAGGTAAGGTAAGGTAAGCCCAGTAACTGCTTTCCACATCTGTCTCTGT
870892 G
1 G
870893 AAACACCGCA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
63 22 0.35
65 41 0.65
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (63 bp):
GTTGTTGTTGCATACAGGTAAGGTAAGGTAAGCCCAGTAACTGCTTTCCACATCTGTCTCTGT
Left flanking sequence: Indices 870264 -- 870763
GGGGTTGGGTGGGTGGTAAGTTACTGGGGTTGCGGTTGAGGTTGTTACGTTATCCCCGTGGTTGC
ATATGGTCCCCGGCCACACAAGCATATGGCCGGCTATACACATTGATAGTTCCACTGGGCTACGC
TAGAGCGACAGTTATGTGGAAACCCGCGATTGAACAACAAGAGCGTCACTATACGGAAACAAAGA
ACCTCTTTCCCGGCACCCGCCCCTCACATTATTCCTACCGCCGCCCGCGCACGGTGGAACGAGGA
AAACCGTACATAGTGGGAACGGCGGGGGTTTGTAATTGATACTTGCATTCAGGGCAGATCCCTTC
CAGCAACTAGAACCTCTATCGGCACGTCTAGCTCTTGACCTTATCATTGCAGGCGTATACGGAGC
GACCCCTTATGCCGCGACTTATATGGTGTATACGGAGCGATGGTGTGCAGTACGTGCCGGGGGCC
CACCCACACTGTACCCGGCCGTATTGGGCGCGCCCACCCAAGTTA
Right flanking sequence: Indices 870893 -- 871392
AAACACCGCACCTCACCTCACCTCACTAACCGTCACCCCACTAACCGTCACCCCACCGCACCTCA
CATATATTGACGTCGTCTACGTTGTTGTTGTAGTTGTCGTCTACGTTGTCGTTGTTGTCGCCCCC
TACCGAGTACTTGTGGGTAATCGAAAACACAACCGTACAACGCGCCACAAGTACGAGAGGGTTGG
CTTCACCCTCGTCGGAATCAACACCCCCAAACCCGAAGGACGGGGTGCTCCGGCCGGGTTATATA
GAGAGGTGTGCGCGGCCATCTAGACAACATTTGTCGTGGGCGAGTTACCACGGTCAACCATGCAG
AAGGGTAAGGGTCGTGGTTTACAACGATCCGGCAGGGTAAACACGTCGTATCGGGGCCACCGTAT
CACGTCGGCTGTGGGCGGACTAACCAACCTCACCCATCCCTAGGGCGACGAGGAACTCCTCCAAT
ACTTGCGGTCTTGCCTTGGAAGTTGAGAGGCAACAGCTGGGGCCG
Found at i:870928 original size:15 final size:15
Alignment explanation
Indices: 870910--870948 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
870900 GCACCTCACC
*
870910 TCACCTCACTAACCG
1 TCACCCCACTAACCG
870925 TCACCCCACTAACCG
1 TCACCCCACTAACCG
870940 TCACCCCAC
1 TCACCCCAC
870949 CGCACCTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.54, G:0.05, T:0.15
Consensus pattern (15 bp):
TCACCCCACTAACCG
Left flanking sequence: Indices 870410 -- 870909
TGGAAACCCGCGATTGAACAACAAGAGCGTCACTATACGGAAACAAAGAACCTCTTTCCCGGCAC
CCGCCCCTCACATTATTCCTACCGCCGCCCGCGCACGGTGGAACGAGGAAAACCGTACATAGTGG
GAACGGCGGGGGTTTGTAATTGATACTTGCATTCAGGGCAGATCCCTTCCAGCAACTAGAACCTC
TATCGGCACGTCTAGCTCTTGACCTTATCATTGCAGGCGTATACGGAGCGACCCCTTATGCCGCG
ACTTATATGGTGTATACGGAGCGATGGTGTGCAGTACGTGCCGGGGGCCCACCCACACTGTACCC
GGCCGTATTGGGCGCGCCCACCCAAGTTAGTTGTTGTTGCATACAGGTAAGGTAAGGTAAGCCCA
GTAACTCGGCTTTCCACATCTGTCTCTGTGTTGTTGTTGCGTACAGGTAAGGTAAGGTAAGCCCA
GTAACTGCTTTCCACATCTGTCTCTGTGAAACACCGCACCTCACC
Right flanking sequence: Indices 870949 -- 871448
CGCACCTCACATATATTGACGTCGTCTACGTTGTTGTTGTAGTTGTCGTCTACGTTGTCGTTGTT
GTCGCCCCCTACCGAGTACTTGTGGGTAATCGAAAACACAACCGTACAACGCGCCACAAGTACGA
GAGGGTTGGCTTCACCCTCGTCGGAATCAACACCCCCAAACCCGAAGGACGGGGTGCTCCGGCCG
GGTTATATAGAGAGGTGTGCGCGGCCATCTAGACAACATTTGTCGTGGGCGAGTTACCACGGTCA
ACCATGCAGAAGGGTAAGGGTCGTGGTTTACAACGATCCGGCAGGGTAAACACGTCGTATCGGGG
CCACCGTATCACGTCGGCTGTGGGCGGACTAACCAACCTCACCCATCCCTAGGGCGACGAGGAAC
TCCTCCAATACTTGCGGTCTTGCCTTGGAAGTTGAGAGGCAACAGCTGGGGCCGCGTGGTACGAG
TGCAGGAAACGGTTACGTGAGCAGCGCAAGCAAGTGTGGCGGTTG
Found at i:871961 original size:36 final size:36
Alignment explanation
Indices: 871914--871982 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
871904 AGAAGCCCCC
871914 CCGGCTATGTACGGTACGGACGGAACCCGGAACCAA
1 CCGGCTATGTACGGTACGGACGGAACCCGGAACCAA
* *
871950 CCGGCTATGTACGGTACGGACTGAGCCCGGAAC
1 CCGGCTATGTACGGTACGGACGGAACCCGGAAC
871983 ATTGGAGAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.32, T:0.13
Consensus pattern (36 bp):
CCGGCTATGTACGGTACGGACGGAACCCGGAACCAA
Left flanking sequence: Indices 871414 -- 871913
GGTTACGTGAGCAGCGCAAGCAAGTGTGGCGGTTGTTACGTGGAGGCATGGGTGGTTACCGTGCA
TAAAAACTCCTTAGGAAGCCCCCAGGCCGTGGCAACATGGAGCAGGCCTAAGGCCCCCAGAACCA
CGTACACCGTCCGATGCGGTTAGGGAAGAGACCAGCCCTCCCCGTATATAGAAAGAGGTTACTTG
GGACCGATCGCTTCCGCTAGTATTTCAATGTGCGAGATTAGTCTATCTTCGACTACAGTAACTAA
CTACAGACAGCGTCAGGTTACGGGGTTACCCGAACCCCACAGCCGGTAGCACTAGTTCTCGATAA
AGGCAATACCGAGGGTTGGGTAACCTGTACAGCGTTTCCTCTTCTTTACGTAGTATGGACGCTCA
ATGGACGCTCGGGCTCGCTTATGTAACTCACAAACCGCATACCGTCTTATCTAGTAAACACCAGT
TCGAGGGCGTATCCTTCAGTTACTAGCTACCGTATAGAAGCCCCC
Right flanking sequence: Indices 871983 -- 872482
ATTGGAGAACGCCGTTACGAACCATTAGAGGATTGTCCCCCCTCCCACTTGTTGCTACTAAGGAC
TATATAGGAAAGGGTCTTCTCTCCTGGGTGCCGGTGGGTTTACGGGGGGGCCGACCATCAGCGGC
CACCTTTCTATATACCGCCACTTTGTTGACTTCGACTTCCCCAACAACCCCCGAGTTACCCCGTA
TACCCTCTCGAGCTGCAAGCATTTACGGTAAACCGTGTGGACCCCACCGGCAAGGCGCTCGTCGG
ATATATGGTCGGATGGCCGCTTACTGAACTGCCCCTAGGCAGCAGTCAAGTATGTAACCGCGTTA
CCGTTCGCTACCCCGCCAAGTATCGTGTGTTGGTGTTGGTTGTGTTCGCGGTAAGTATCGTCGAT
GTCTTCACCCTGGTGTGGCGCGGAGAGGAGTCTACTTGCATGCCGGCACAGGGTAACGCCCCCTA
CTTCGTAACAAGGAGCAGGTGGTGCCCTTTCCCTCCCAGCCCAAC
Found at i:882748 original size:6 final size:6
Alignment explanation
Indices: 882737--882787 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
882727 GGTCAGTTAT
882737 AACCGC AACCGC AACCGC AACCGC AACCGC AACCGC AACCGC AACCGC
1 AACCGC AACCGC AACCGC AACCGC AACCGC AACCGC AACCGC AACCGC
882785 AAC
1 AAC
882788 TACTTAGGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.35, C:0.49, G:0.16, T:0.00
Consensus pattern (6 bp):
AACCGC
Left flanking sequence: Indices 882237 -- 882736
CACGCAGTCCAGTAGACGCAACATCCGATGGAGCGAGTCTAGGATCCTGTAGTCGGCAGGAACCC
TCACAGTACGATATAGTACTGCTCCACTGCTAGGAGAGGGGGCCCTGGTTTTGTGGTAATGGGAT
CGGGCTAGCCCGTATTACCGCCACCTACGAATAGGCAGGTAAGGGGAGCTGGTTCTTCGTATTAC
CGCCACCTACGAGAACTGTTTCAAAGTCGCACCCATTCCCTTTTCGCGGTGAAAGCAGCATTCTC
TCGACCAGTCACTCAAACACTTCTTTCTTACCAAAACACAGAAGATCCACCATCCTTAGAAGAGC
GTCCTGCCGCCCACTATCTCGAAAGGTAGCTTGGGTCCGGCTGCCCAGAGTTGGAGGGTAGGCCA
GAGGCAATATACTTCCATACCACCAGCAATCCAATCCAGTCGTTCCGACGATGGGGTATCGGCTT
CGGAATCGCAGACGCCACTCGATTCCATATAGAGAGGTCAGTTAT
Right flanking sequence: Indices 882788 -- 883287
TACTTAGGTAAGCCCATATCATATACCCTGTTGCGCCCATATCATATACCCTGTTGCGGTAAGGT
AAGGTAAGGCGCGGCAGCCCCCCTTCCGGGAAACGGTTACCTTCACTTACCCGGGCAGCACCGTT
CACAGCCGATCTGCTTCACTCACCCGGGCAGCACCGTTCACAGCCGATCTGTGAGATTGAGCATC
AAGTATGTTACCACTACAACAGTCTCACTTCCAGCAGGATTCACTGCTGCACCTGTGACGCCTGG
TGAACAGCCGGAAATGGCGCAATAAGCAACCGGCCCTTCCTGGGAGGTGGGTGGCACCGCGCTCC
GCCACCTGACGCCTGGCAAGCGATAGTGGTAAACGCCGGTTATTGACGTACGGTGGGGGGGGTCT
CACTGTGGTCGATGAATCCACAGGGCTACACCCTACCAACACCAATCCTCAGTTAGTAGCTCGAG
TAACTAGCGTGACCAGACCTCCTTAATCGCAGACACGTGGTTCTA
Found at i:882829 original size:23 final size:23
Alignment explanation
Indices: 882799--882845 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
882789 ACTTAGGTAA
882799 GCCCATATCATATACCCTGTTGC
1 GCCCATATCATATACCCTGTTGC
882822 GCCCATATCATATACCCTGTTGC
1 GCCCATATCATATACCCTGTTGC
882845 G
1 G
882846 GTAAGGTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (23 bp):
GCCCATATCATATACCCTGTTGC
Left flanking sequence: Indices 882299 -- 882798
CCCTCACAGTACGATATAGTACTGCTCCACTGCTAGGAGAGGGGGCCCTGGTTTTGTGGTAATGG
GATCGGGCTAGCCCGTATTACCGCCACCTACGAATAGGCAGGTAAGGGGAGCTGGTTCTTCGTAT
TACCGCCACCTACGAGAACTGTTTCAAAGTCGCACCCATTCCCTTTTCGCGGTGAAAGCAGCATT
CTCTCGACCAGTCACTCAAACACTTCTTTCTTACCAAAACACAGAAGATCCACCATCCTTAGAAG
AGCGTCCTGCCGCCCACTATCTCGAAAGGTAGCTTGGGTCCGGCTGCCCAGAGTTGGAGGGTAGG
CCAGAGGCAATATACTTCCATACCACCAGCAATCCAATCCAGTCGTTCCGACGATGGGGTATCGG
CTTCGGAATCGCAGACGCCACTCGATTCCATATAGAGAGGTCAGTTATAACCGCAACCGCAACCG
CAACCGCAACCGCAACCGCAACCGCAACCGCAACTACTTAGGTAA
Right flanking sequence: Indices 882846 -- 883345
GTAAGGTAAGGTAAGGCGCGGCAGCCCCCCTTCCGGGAAACGGTTACCTTCACTTACCCGGGCAG
CACCGTTCACAGCCGATCTGCTTCACTCACCCGGGCAGCACCGTTCACAGCCGATCTGTGAGATT
GAGCATCAAGTATGTTACCACTACAACAGTCTCACTTCCAGCAGGATTCACTGCTGCACCTGTGA
CGCCTGGTGAACAGCCGGAAATGGCGCAATAAGCAACCGGCCCTTCCTGGGAGGTGGGTGGCACC
GCGCTCCGCCACCTGACGCCTGGCAAGCGATAGTGGTAAACGCCGGTTATTGACGTACGGTGGGG
GGGGTCTCACTGTGGTCGATGAATCCACAGGGCTACACCCTACCAACACCAATCCTCAGTTAGTA
GCTCGAGTAACTAGCGTGACCAGACCTCCTTAATCGCAGACACGTGGTTCTAAGGTTCCCACTAA
GGTAACGAATCAACGCGCACTGGATATACTAGGACACATAGATCG
Found at i:882936 original size:38 final size:38
Alignment explanation
Indices: 882893--882968 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
882883 AAACGGTTAC
*
882893 CTTCACTTACCCGGGCAGCACCGTTCACAGCCGATCTG
1 CTTCACTCACCCGGGCAGCACCGTTCACAGCCGATCTG
882931 CTTCACTCACCCGGGCAGCACCGTTCACAGCCGATCTG
1 CTTCACTCACCCGGGCAGCACCGTTCACAGCCGATCTG
882969 TGAGATTGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.18, C:0.41, G:0.21, T:0.20
Consensus pattern (38 bp):
CTTCACTCACCCGGGCAGCACCGTTCACAGCCGATCTG
Left flanking sequence: Indices 882393 -- 882892
ACGAATAGGCAGGTAAGGGGAGCTGGTTCTTCGTATTACCGCCACCTACGAGAACTGTTTCAAAG
TCGCACCCATTCCCTTTTCGCGGTGAAAGCAGCATTCTCTCGACCAGTCACTCAAACACTTCTTT
CTTACCAAAACACAGAAGATCCACCATCCTTAGAAGAGCGTCCTGCCGCCCACTATCTCGAAAGG
TAGCTTGGGTCCGGCTGCCCAGAGTTGGAGGGTAGGCCAGAGGCAATATACTTCCATACCACCAG
CAATCCAATCCAGTCGTTCCGACGATGGGGTATCGGCTTCGGAATCGCAGACGCCACTCGATTCC
ATATAGAGAGGTCAGTTATAACCGCAACCGCAACCGCAACCGCAACCGCAACCGCAACCGCAACC
GCAACTACTTAGGTAAGCCCATATCATATACCCTGTTGCGCCCATATCATATACCCTGTTGCGGT
AAGGTAAGGTAAGGCGCGGCAGCCCCCCTTCCGGGAAACGGTTAC
Right flanking sequence: Indices 882969 -- 883468
TGAGATTGAGCATCAAGTATGTTACCACTACAACAGTCTCACTTCCAGCAGGATTCACTGCTGCA
CCTGTGACGCCTGGTGAACAGCCGGAAATGGCGCAATAAGCAACCGGCCCTTCCTGGGAGGTGGG
TGGCACCGCGCTCCGCCACCTGACGCCTGGCAAGCGATAGTGGTAAACGCCGGTTATTGACGTAC
GGTGGGGGGGGTCTCACTGTGGTCGATGAATCCACAGGGCTACACCCTACCAACACCAATCCTCA
GTTAGTAGCTCGAGTAACTAGCGTGACCAGACCTCCTTAATCGCAGACACGTGGTTCTAAGGTTC
CCACTAAGGTAACGAATCAACGCGCACTGGATATACTAGGACACATAGATCGTTACTTCACCGTA
GCGGGCAACATCCCCGGCCCCACATTCAGCAACATCCCCTCTCTTCGGCCACATTCACGTTAGTT
ATATAAGGTTGTTCTAGACCATACAACAACTCTCCATTATGTAGT
Found at i:885287 original size:18 final size:18
Alignment explanation
Indices: 885264--885300 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
885254 CCAACCATTC
*
885264 TATTGAGGGTGATAGGCG
1 TATTGAGGGTGAGAGGCG
885282 TATTGAGGGTGAGAGGCG
1 TATTGAGGGTGAGAGGCG
885300 T
1 T
885301 TATGTAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.05, G:0.46, T:0.27
Consensus pattern (18 bp):
TATTGAGGGTGAGAGGCG
Left flanking sequence: Indices 884764 -- 885263
AGAGGCGCGTTCTAAAGGATCATGTAATGAGAACCAGAGAGGCCCACATACGTGCCGCCTATATA
CGACGACCCCGCACAACTTTGTTATCCATCTTGCAAGTAGAACTCGCGTACGGTGTATGGAATGG
TGATCACATAAAAGGACCGCCCACCAGACCGTACTTCTTACCGAAACAGACGGCTAAGTGTCTTC
ACCGTAACTGTGCTGTGCCGGGACCAACCAAGTAGAACGGCGGATCAGGTCGTAACCGTTTATGC
TTGTGACACGGCGGGAGAACCGATCGGAGCCAACAAGTTCACGCTGTAAACCATCAGCAACCGTA
TCAGGAGGAAGGCTGAAGCCGCCTGAACCCAACCTCTATAAACGTGCTGGTGCTCGCGACAGTTC
TCTACTCACGTCTGTCTCGATATCACGCATATACATACATATATACTCATACTCGACACCTACAG
AGAGCTCCCTGCACGCCTCATAGAGCCTGATCAATCCAACCATTC
Right flanking sequence: Indices 885301 -- 885800
TATGTAACACATGAAACTGAGGTCTGTCAATATCCTCTTTCAGTTGAGCTTTACCCACGGGGCTG
ATACCGGTGTGGTATCGGAATGTACGGAGCAATAGCCATTCCTGTACGGAGCCGAGTAGGGCTAC
AACCCCTTGACGTGTTAACCCTACATCATCCCGGTTCCCTAGACGCTTACGGAATAGGCGCAGTT
CCGGGACACGCGGATCTGGCAACCTTCGTGCGGTATCGCCCACCATACCGTACAATAACGCGCCA
TGTCATTGCTGGACCTTTATCGCCACAATCATATAGAGGAGAGGTGTCGACCTTCGCTGACATGG
GTGCGGTTACGCCCAATAGAGGTAGACAGGTGCCACCCCGCACATCCACAACTCGATGTAGATCT
CGCCGGGTAGCTACGGCTCGAACGGAAGAAGCAGCAACCGTGATATTCACCAGCCGTTACCCTGA
ATCCCGCCTAGGTATGAAGGTTGCGGTAGATTCCGCTATATAGCA
Found at i:888236 original size:15 final size:15
Alignment explanation
Indices: 888216--888245 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
888206 AAGGAGCCAT
888216 CTCAATCCCGCCAGA
1 CTCAATCCCGCCAGA
888231 CTCAATCCCGCCAGA
1 CTCAATCCCGCCAGA
888246 GTGAGCCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.47, G:0.13, T:0.13
Consensus pattern (15 bp):
CTCAATCCCGCCAGA
Left flanking sequence: Indices 887716 -- 888215
CGTATCCCAGTTCGGTAGGGCCGTCGCACGTACGCCCATAAGGGGCACTTTCAGCATATCGGCGC
GTATACTAGCAGGGGTTGTGAGCGGTACCACGTGTCGTGAGATTGATCGTTGTATGGGGTTGTGA
GCGGTCCCACGTGTCGTGAGATTGATCGGTGTTGGATTACTCACTTCATATGGAAAGCAGGCTAG
TTATTGAGGTGGGGTGTTGTTACCAACAGGAGTCGTTAGTTAGTCCCACTGCAATTGCACGCGCC
ACAAGTACGAGAGGGTTGGCTCCCACCATGAAGAACGATGACATTTCCGTACAAGTGTCCCCGTT
TCCAGCACCTCAGAGGAGCCCCCTACAGACCACTGGTTCGTAAAGGTAGCTTGGGTCTGCTGACT
AGATAAGGGAAACTTGGACCAGGGGAGTGTTTCTCCCTTTATGTCTCAGAGTCCAATCCCCACGT
ATGCGGATGCAGTCACATCCGATATATGCGGATTGAAGGAGCCAT
Right flanking sequence: Indices 888246 -- 888745
GTGAGCCAGGACCGCGTAAGCGGCAGCCGAAAGTCGGATACGGTTATCTTGAGTCACCCGCCAAC
TACGCGACACCGTACACAGTGGATCAATTGACTTGTGGGCGGCAAGCCATACATATATACGCGTG
ATGCAACGCTATCCCTCTGACGCAGGGGAGTCGGCCCTTCATAGAGGCAGGTTGAAGGCGGGACC
CGTCAGGTAAGCCAAGGTTATTACCAACACCGCAGCAACAAGGTGCTGCAGAACGCTTAGACGGG
GTTGATGCGGCCTCATTCAACCTTACCCCAACTTGAGGTGCCCAGTTGTTATTGACGTACGGTGG
GGCGCGAACGAAGGTGAAAAACCTGTTGCCGGTGTGGCAATATACGGTTGGTTATCAACGAGGTA
GAGGACGGGAAGGCAGAGGGAGGCAAAATTCACTCTGATCTGGTAAGGCTAGACGCGTATATGTG
ATGGTACAAGAACACCTCCCGAATCGTGGCGTGCCTTCATAACAA
Found at i:889725 original size:5 final size:5
Alignment explanation
Indices: 889717--889741 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
889707 CACAACTATA
889717 TACGG TACGG TACGG TACGG TACGG
1 TACGG TACGG TACGG TACGG TACGG
889742 GGGTTATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (5 bp):
TACGG
Left flanking sequence: Indices 889217 -- 889716
ACCGCATAATGCAGAGAGGAGGGTGCCCAGCGAGTGATACTCGTCGCCCTTCCTTCGTCGCCCGT
CCTATAGTCACTGCTCCCCTATATGCACAGACAGAGCTGCAGTGGGTGGGTGATCCGGATCAACA
CAACCTTGTTCCACACACCCACACACATAAAGGGGTCTTATCACTGTGCCTCAAAGTAGAATACA
ACCCACTCCTCACCACATGTGCCACTCCACCGTATAGTATAGTAGTTTCCAAGCCCATATAGGAA
ACCGTAAATAACCGTGTACGCGCCCACCTCTCTATATAACCCGCCCGGTAGTTCCGGTAAGCAGC
AACTGGCTCATGAGGAAGACTAACACTTGCGAGCGAGGATAAACCACATACGGGATCGAGGTTAG
TTACTAGAGAAGATACGGTATCCATCGCAGCCTGATGCCAAGCATTTGAAGTGCTTCCACTAGTT
GTTCCATATATACGGGGTTCCACCCCACCCCACCCCACAACTATA
Right flanking sequence: Indices 889742 -- 890241
GGGTTATGGAAACAGGACCCAACCACGTACTGTTATTTCCCATTCTGATGGTCCAGCCGATTAGG
CAAGTCCCCACAATCCGGTCCACCCGGCGGCGTTGATATGGCGGGCCCACCTCTCCTCTCCTCTC
TATATAACACGACGTTCTCGCAGATAGTACGAATGGCCAGTTTCACCAAGTACCTTACGCGCAAC
GCTACTCAGTCATGCGCGTTGATCAACGGTACAGTGATCTTTCCCGTGGGCGATGGGTTGGAGAT
TTGTGAAATGATCTTTCCCGTGGGCGATGGGTTGGAGATTTGTGAAACCGGGCGACCTGCACATC
CACTTACCTTTGTGGAGGCCTCCCAGTTCCGCTTACGAATATACGTCTTTCTAACCCGCCAATTG
ACATGCGCAATCTGTAACTAGAACGCGCTTACCACTTACTCGCTCCTTGGCCTTCACTTGTACCT
GCGGGTTCGTTCATGACGCGACTTCGTGTTTCCGCATGAACGCCG
Found at i:890025 original size:39 final size:39
Alignment explanation
Indices: 889971--890048 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
889961 AACGGTACAG
889971 TGATCTTTCCCGTGGGCGATGGGTTGGAGATTTGTGAAA
1 TGATCTTTCCCGTGGGCGATGGGTTGGAGATTTGTGAAA
890010 TGATCTTTCCCGTGGGCGATGGGTTGGAGATTTGTGAAA
1 TGATCTTTCCCGTGGGCGATGGGTTGGAGATTTGTGAAA
890049 CCGGGCGACC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.18, C:0.13, G:0.36, T:0.33
Consensus pattern (39 bp):
TGATCTTTCCCGTGGGCGATGGGTTGGAGATTTGTGAAA
Left flanking sequence: Indices 889471 -- 889970
TAGGAAACCGTAAATAACCGTGTACGCGCCCACCTCTCTATATAACCCGCCCGGTAGTTCCGGTA
AGCAGCAACTGGCTCATGAGGAAGACTAACACTTGCGAGCGAGGATAAACCACATACGGGATCGA
GGTTAGTTACTAGAGAAGATACGGTATCCATCGCAGCCTGATGCCAAGCATTTGAAGTGCTTCCA
CTAGTTGTTCCATATATACGGGGTTCCACCCCACCCCACCCCACAACTATATACGGTACGGTACG
GTACGGTACGGGGGTTATGGAAACAGGACCCAACCACGTACTGTTATTTCCCATTCTGATGGTCC
AGCCGATTAGGCAAGTCCCCACAATCCGGTCCACCCGGCGGCGTTGATATGGCGGGCCCACCTCT
CCTCTCCTCTCTATATAACACGACGTTCTCGCAGATAGTACGAATGGCCAGTTTCACCAAGTACC
TTACGCGCAACGCTACTCAGTCATGCGCGTTGATCAACGGTACAG
Right flanking sequence: Indices 890049 -- 890548
CCGGGCGACCTGCACATCCACTTACCTTTGTGGAGGCCTCCCAGTTCCGCTTACGAATATACGTC
TTTCTAACCCGCCAATTGACATGCGCAATCTGTAACTAGAACGCGCTTACCACTTACTCGCTCCT
TGGCCTTCACTTGTACCTGCGGGTTCGTTCATGACGCGACTTCGTGTTTCCGCATGAACGCCGAA
ACCACAGAAGCTTCCGTAACGTCCCACCTCAATAACCCGGCAACAGAAGCCAATCCCAAGTTGGC
CAGTTAAGTCGCAACCGCGTTGATAGTCTCTAGGCCGGTACTGCCTGCATAAGAGAACCGGCGCA
TCGGTGTTTCGTTGCCGGCTAGCTTCCCGAATTGCCTTACCTTTACAAACCAGCCTATAGGGAGG
GTGGGTATATAGAGCGCACCATAGCTCCATATGGTTGTGAGAGCAGCCGTCTAAGGCTCACTAAT
CCGTCATCATTAGTTACACGCCACTATTCAACACGGGTATATGAT
Found at i:897657 original size:13 final size:13
Alignment explanation
Indices: 897639--897664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
897629 GCGTCCTGGA
897639 ATCAATCACTCAC
1 ATCAATCACTCAC
897652 ATCAATCACTCAC
1 ATCAATCACTCAC
897665 TCTCTACCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (13 bp):
ATCAATCACTCAC
Left flanking sequence: Indices 897139 -- 897638
TTGTGCGATGGATCGAGCGCTGTCGATATGTTCTTGTTACATGAAGGCGAGATGTTCTTGTTACA
TATGGAGGATGGACCAAGGCTGGAGCGCTGGATCGCGATATGTTCTTGTTCATAACAAGGCGAGA
TGTTCGCTCGATCCCCCCTGGACGGTCCAAGTAACGAAACCATGTCGCGATGGGTTGTCGCGCTT
GGATCGAGTTGGCAGAGTTAATGCGTACGCGTCCGCACGTACTACCTCTTCTTCCCCAACCGATC
GGACGCGTATGCGTCCTGGCATCAATCACTCTCCGCACATATGGCTCTGGCCCGATTGCAAGGGA
TCGCTCAGACAAGCCCCGGGGATCGCACCCACACAACAGCCGTAGCCCTTCATGTTCGACCAATA
TGTAGGGTAGGCTTGAGCTTACGCATCTCAACAAGCACGGTTATATAGAGAGGGTGGGCGCGTAC
GCTACCGCTTCTCCCTCGACTGATCGGACACATACGCGTCCTGGA
Right flanking sequence: Indices 897665 -- 898164
TCTCTACCTCACATCAATACTCCCTAAAGAGCTGACTATGTTCGTATGTAGGGCCAACGCCCACC
CAGCACCCCTGGTAAGGTATTGAATTGGACCAATCAGACGTGTACACGTCCTGGCACAAATGACT
CCTCTGACACCAGCAACCGTTTCGTTAACGGTGAGGTTGCTTCACCAGCGTTACGGTATGTAGGC
CGGAACCATAGGTTGGCATCGGTAATGACAATGGAAGTGGCGTATGGGAAAGATGCCTCCTCCCG
GCTGCGATACTTTGGACGGTGGTTTGAAAGGTAGCGTTGACCTGCAACCATGACCCGTTCTTGTT
CACTCAACCGGGCTTCGTCGGGTAAGGCTCCCACTTGAGGAATATTGGTCATGGGCTGCCACCCG
CGGGTCATGGTCATTGGGGGATCTCCAAGAAGCTGGTCTCAAACCCCATTACTTGACTGCCATGC
TGTGTTCCTGGTAGGAGACCTGGAATGATGCGGAGGGAAAGCACA
Found at i:899968 original size:15 final size:15
Alignment explanation
Indices: 899948--899978 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
899938 GTGATAAGTC
899948 CCCGACCTACCTGAA
1 CCCGACCTACCTGAA
899963 CCCGACCTACCTGAA
1 CCCGACCTACCTGAA
899978 C
1 C
899979 TGTGACTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.48, G:0.13, T:0.13
Consensus pattern (15 bp):
CCCGACCTACCTGAA
Left flanking sequence: Indices 899448 -- 899947
TACTAACGCATACGCGTTGGCACTCCCTAGATGATGAAGCCCTCGGTCGGTGCCGAATGCATACG
CATCTCGGGGTGTGCAGTATGCGTATATAATCGCTGCTGGTAAGACGCATATGCGTCGCTGCTCG
TTCTGTTTCTCGCTCACGCTCCAGTGGGAGATGCTTGATGTTGATGTGCCTGCTGGCCATGCGTG
TAGTACACTCCACCTTACGTCTATGTTGATAGTGCCCTCAAGTGGTTGAGTCTTCGTTAGGATCA
GATGGTGATGGGCTCATCCTTGAATCTGGCTGACAATCCGGTCGCCATGTACGGGGCGTTATTGT
GAGTGGGCTAGTATCCAGATCCGCCCTACGCCGCAGAAGCCACTAGCATCCTTCATCCGACATTG
AGACGCAAGTCGCGTCAGGTAATGGACTGAAGCCGCATGACGGCTTGATAGTTAACAAGAGCTCC
GGTGCGCCTTGGGATGATAGTATCAGCGCACGCTGGTGATAAGTC
Right flanking sequence: Indices 899979 -- 900478
TGTGACTCCCTTTCTTTCTCTCCCGCTCACATGCCATAAAGCCCCACCTCTTTGTTCGGTATCGG
GCAATTGGTCAGGCATTGCTGACTAAGCCGATGTGGGCTGCCTAAGGTCTGGAGTTCTACCTCAC
AAGGACGGGGATCTGCACCAACGCTGGGGTATGCTGTATAACTGTCCTCCAAGTGCGGTCTTATG
TAGTATCGCTGGGCCGCAATCCGTTTATGATTAAACGCTTCAGTAATTGTGGTTTCGTGTGGACG
CTGTCTTGTATGTTTGACGCACGGTGGGGCCGGCATTGAAATTCGTAACCCCTTCGAAGAGGACT
CAGTTCCTGTCCCCACATACACGGATCGATCCTGTAGATTCTGACCCAACGATGCGGATCTAAGG
TCCCCACTTGGACTCTGCTGCTGTGGCATGTGGTGGGTCTTGCGCTGGCCAGAGTTGTGCAGTGA
TGCATCCTTGACGCCTGCTCTGGTATCGGCGTAACTACCCTAGAC
Found at i:903284 original size:22 final size:22
Alignment explanation
Indices: 903256--903299 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
903246 CTCATACGGC
903256 TCACTCCCAGGGCCGGCGTATA
1 TCACTCCCAGGGCCGGCGTATA
903278 TCACTCCCAGGGCCGGCGTATA
1 TCACTCCCAGGGCCGGCGTATA
903300 GTATATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (22 bp):
TCACTCCCAGGGCCGGCGTATA
Left flanking sequence: Indices 902756 -- 903255
GATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCTGAACCAA
TGGGAAGCAAGGCCGTAAGGCGGAGCGAATCCAGCAGAAACCAGTAGCCTCAGTTCAGATTGTTC
TCTGCAACTCGAGAACAGGAAGGTGGAATCGCTAGTAATCGCGCATCAGCATGACGCGGTGAATC
TGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAAAAGCTCTCGCCAGAAGCAGTAAA
GCCGAAGACAGCGCGCGCGTATACACAACACTAGAGTAGTGGAGAGATCTGTGTGCTGTGCACCG
CATTCTCCTGTTCCACATCGGTGGCGGAGCTTGGGTGGTGCTCTTTCGGTTGGCGCATGGCAAGG
TGGGGGCATAGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAA
TACAATGGGAGTAGGTGTGAGTAAAGTTCGGACACCTCATACGGC
Right flanking sequence: Indices 903300 -- 903799
GTATATAAAGCGCAGGGGGTGCGCAATTCCAATTCGCCTATATGTGGTTGTGGTTGTCGTCTATA
TGGTCGTCTCCGTCTATATGGTGTGGTTGTCGTCTATATGGTCGTCTCCGTCTATATGGGGTGCG
CCATTCTATTCTATATATGGTCGTCTCCGATAGTGATTCCAACTAAGCGTGCACAACGCACTTGC
GTGTTCCACAACGCTAGTTGGCATTATCACACCCTATGTACGAATGCCAACGAATAACGAACTGT
GGGGGTGGGTAGGGGGTATCCCCCTGGTTACGGCCAATAGCACTGGGCTGACGAGCAGCAGGTAG
GAAGTAATCGCGGCTTCTGTTACAATATACGGATTGGCCGGCTGGTGCTCGGTACCGGCTAAGGA
TCGTCCACCGGAAGCCCTGCGGACCAACCTCCCAATTTCAACGGTACTGTTGGAGAGGAGAGCAT
ATATGTAGGGAGTAGGAGGTTGTCGTTGTTGAGTACTAGAGCCAT
Found at i:903380 original size:18 final size:18
Alignment explanation
Indices: 903357--903423 Score: 82
Period size: 18 Copynumber: 3.6 Consensus size: 18
903347 TTGTGGTTGT
903357 CGTCTATATGGTCGTCTC
1 CGTCTATATGGTCGTCTC
* *
903375 CGTCTATATGGT-GTGGTTGT
1 CGTCTATATGGTCGT--CT-C
903395 CGTCTATATGGTCGTCTC
1 CGTCTATATGGTCGTCTC
903413 CGTCTATATGG
1 CGTCTATATGG
903424 GGTGCGCCAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 2 0.05
18 23 0.56
19 2 0.05
20 12 0.29
21 2 0.05
ACGTcount: A:0.12, C:0.21, G:0.27, T:0.40
Consensus pattern (18 bp):
CGTCTATATGGTCGTCTC
Left flanking sequence: Indices 902857 -- 903356
GAAACCAGTAGCCTCAGTTCAGATTGTTCTCTGCAACTCGAGAACAGGAAGGTGGAATCGCTAGT
AATCGCGCATCAGCATGACGCGGTGAATCTGTACCCGGGCCCTGTACACACCGCCCGTCACACCC
TGGGAAAAGCTCTCGCCAGAAGCAGTAAAGCCGAAGACAGCGCGCGCGTATACACAACACTAGAG
TAGTGGAGAGATCTGTGTGCTGTGCACCGCATTCTCCTGTTCCACATCGGTGGCGGAGCTTGGGT
GGTGCTCTTTCGGTTGGCGCATGGCAAGGTGGGGGCATAGACTGGGGTGAAGTCGTAACAAGGTA
GCCGTAGGGGAACCTGCGGCTGGATCGAATACAATGGGAGTAGGTGTGAGTAAAGTTCGGACACC
TCATACGGCTCACTCCCAGGGCCGGCGTATATCACTCCCAGGGCCGGCGTATAGTATATAAAGCG
CAGGGGGTGCGCAATTCCAATTCGCCTATATGTGGTTGTGGTTGT
Right flanking sequence: Indices 903424 -- 903923
GGTGCGCCATTCTATTCTATATATGGTCGTCTCCGATAGTGATTCCAACTAAGCGTGCACAACGC
ACTTGCGTGTTCCACAACGCTAGTTGGCATTATCACACCCTATGTACGAATGCCAACGAATAACG
AACTGTGGGGGTGGGTAGGGGGTATCCCCCTGGTTACGGCCAATAGCACTGGGCTGACGAGCAGC
AGGTAGGAAGTAATCGCGGCTTCTGTTACAATATACGGATTGGCCGGCTGGTGCTCGGTACCGGC
TAAGGATCGTCCACCGGAAGCCCTGCGGACCAACCTCCCAATTTCAACGGTACTGTTGGAGAGGA
GAGCATATATGTAGGGAGTAGGAGGTTGTCGTTGTTGAGTACTAGAGCCATTACGACGCCGCCCC
CCCGCATACCCCCCGAATACGCAGTTGTTGCCTACTCGGATGAACTCGCCCGCCAACGAGTAGGG
TAGTACGGAAACGAGTAGGGCTAGGGCGAACACAAACCTCATGCA
Found at i:903392 original size:38 final size:38
Alignment explanation
Indices: 903348--903423 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
903338 TATATGTGGT
903348 TGTGGTTGTCGTCTATATGGTCGTCTCCGTCTATATGG
1 TGTGGTTGTCGTCTATATGGTCGTCTCCGTCTATATGG
903386 TGTGGTTGTCGTCTATATGGTCGTCTCCGTCTATATGG
1 TGTGGTTGTCGTCTATATGGTCGTCTCCGTCTATATGG
903424 GGTGCGCCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.11, C:0.18, G:0.29, T:0.42
Consensus pattern (38 bp):
TGTGGTTGTCGTCTATATGGTCGTCTCCGTCTATATGG
Left flanking sequence: Indices 902848 -- 903347
AATCCAGCAGAAACCAGTAGCCTCAGTTCAGATTGTTCTCTGCAACTCGAGAACAGGAAGGTGGA
ATCGCTAGTAATCGCGCATCAGCATGACGCGGTGAATCTGTACCCGGGCCCTGTACACACCGCCC
GTCACACCCTGGGAAAAGCTCTCGCCAGAAGCAGTAAAGCCGAAGACAGCGCGCGCGTATACACA
ACACTAGAGTAGTGGAGAGATCTGTGTGCTGTGCACCGCATTCTCCTGTTCCACATCGGTGGCGG
AGCTTGGGTGGTGCTCTTTCGGTTGGCGCATGGCAAGGTGGGGGCATAGACTGGGGTGAAGTCGT
AACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAATACAATGGGAGTAGGTGTGAGTAAAGT
TCGGACACCTCATACGGCTCACTCCCAGGGCCGGCGTATATCACTCCCAGGGCCGGCGTATAGTA
TATAAAGCGCAGGGGGTGCGCAATTCCAATTCGCCTATATGTGGT
Right flanking sequence: Indices 903424 -- 903923
GGTGCGCCATTCTATTCTATATATGGTCGTCTCCGATAGTGATTCCAACTAAGCGTGCACAACGC
ACTTGCGTGTTCCACAACGCTAGTTGGCATTATCACACCCTATGTACGAATGCCAACGAATAACG
AACTGTGGGGGTGGGTAGGGGGTATCCCCCTGGTTACGGCCAATAGCACTGGGCTGACGAGCAGC
AGGTAGGAAGTAATCGCGGCTTCTGTTACAATATACGGATTGGCCGGCTGGTGCTCGGTACCGGC
TAAGGATCGTCCACCGGAAGCCCTGCGGACCAACCTCCCAATTTCAACGGTACTGTTGGAGAGGA
GAGCATATATGTAGGGAGTAGGAGGTTGTCGTTGTTGAGTACTAGAGCCATTACGACGCCGCCCC
CCCGCATACCCCCCGAATACGCAGTTGTTGCCTACTCGGATGAACTCGCCCGCCAACGAGTAGGG
TAGTACGGAAACGAGTAGGGCTAGGGCGAACACAAACCTCATGCA
Found at i:903400 original size:20 final size:20
Alignment explanation
Indices: 903348--903406 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
903338 TATATGTGGT
903348 TGTGGTTGTCGTCTATATGG
1 TGTGGTTGTCGTCTATATGG
* *
903368 TCGT--CT-CCGTCTATATGG
1 T-GTGGTTGTCGTCTATATGG
903386 TGTGGTTGTCGTCTATATGG
1 TGTGGTTGTCGTCTATATGG
903406 T
1 T
903407 CGTCTCCGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
17 2 0.06
18 12 0.39
19 2 0.06
20 13 0.42
21 2 0.06
ACGTcount: A:0.10, C:0.15, G:0.31, T:0.44
Consensus pattern (20 bp):
TGTGGTTGTCGTCTATATGG
Left flanking sequence: Indices 902848 -- 903347
AATCCAGCAGAAACCAGTAGCCTCAGTTCAGATTGTTCTCTGCAACTCGAGAACAGGAAGGTGGA
ATCGCTAGTAATCGCGCATCAGCATGACGCGGTGAATCTGTACCCGGGCCCTGTACACACCGCCC
GTCACACCCTGGGAAAAGCTCTCGCCAGAAGCAGTAAAGCCGAAGACAGCGCGCGCGTATACACA
ACACTAGAGTAGTGGAGAGATCTGTGTGCTGTGCACCGCATTCTCCTGTTCCACATCGGTGGCGG
AGCTTGGGTGGTGCTCTTTCGGTTGGCGCATGGCAAGGTGGGGGCATAGACTGGGGTGAAGTCGT
AACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCGAATACAATGGGAGTAGGTGTGAGTAAAGT
TCGGACACCTCATACGGCTCACTCCCAGGGCCGGCGTATATCACTCCCAGGGCCGGCGTATAGTA
TATAAAGCGCAGGGGGTGCGCAATTCCAATTCGCCTATATGTGGT
Right flanking sequence: Indices 903407 -- 903906
CGTCTCCGTCTATATGGGGTGCGCCATTCTATTCTATATATGGTCGTCTCCGATAGTGATTCCAA
CTAAGCGTGCACAACGCACTTGCGTGTTCCACAACGCTAGTTGGCATTATCACACCCTATGTACG
AATGCCAACGAATAACGAACTGTGGGGGTGGGTAGGGGGTATCCCCCTGGTTACGGCCAATAGCA
CTGGGCTGACGAGCAGCAGGTAGGAAGTAATCGCGGCTTCTGTTACAATATACGGATTGGCCGGC
TGGTGCTCGGTACCGGCTAAGGATCGTCCACCGGAAGCCCTGCGGACCAACCTCCCAATTTCAAC
GGTACTGTTGGAGAGGAGAGCATATATGTAGGGAGTAGGAGGTTGTCGTTGTTGAGTACTAGAGC
CATTACGACGCCGCCCCCCCGCATACCCCCCGAATACGCAGTTGTTGCCTACTCGGATGAACTCG
CCCGCCAACGAGTAGGGTAGTACGGAAACGAGTAGGGCTAGGGCG
Found at i:905898 original size:38 final size:38
Alignment explanation
Indices: 905847--905923 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
905837 CGTGCGCGTG
905847 CCAGCCAAGAGACGATTACTTCCATCCTTGTTTCACGT
1 CCAGCCAAGAGACGATTACTTCCATCCTTGTTTCACGT
905885 CCAGCCAAGAGACGATTACTTCCATCCTTGTTTCACGT
1 CCAGCCAAGAGACGATTACTTCCATCCTTGTTTCACGT
905923 C
1 C
905924 GTTATATGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29
Consensus pattern (38 bp):
CCAGCCAAGAGACGATTACTTCCATCCTTGTTTCACGT
Left flanking sequence: Indices 905347 -- 905846
CACACAACCCACCAGCGTCCCTGAAGATGGGACAGGGAGGCACGCCGGGGACACATGCGTACAAC
CCCGATCACAAAGCAGAACCAAGTACCCAGGCAACAGGGGAGACCCGTCCCTGAACCCGGCCCCG
CCACGTCACTGATGCTAGAGCGTATTTACCGTTACGACAGGGTAGTGCTGTACCGTTCGTTGTGT
TTCCACAACGCCTCGACCCCATCTGCTACGATCGCCGGAGCCCAGATGCTATCCTCGAGACATCA
CCCCTACTTGAACACCTGTGAACTACAAAACCCAGAAAGAGCTCGTCAGGCCCAGTATGTTGGCC
GCCTGGCGTATATGCTGGAAGCGCCGCGATTACCCTATATCCTATATCTATATCATGCGATCTAT
ATCAAAGGGACAGGCCGAAGCCCGCGCATAGCCTTTTCCTATGCGGTTGCATCACACCCGGCGTT
GTAGCCCAACTAGCACACGTGAGTGACACCGGAACCGTGCGCGTG
Right flanking sequence: Indices 905924 -- 906423
GTTATATGCCGGCAGTTAGTCGACCCAACGGTCCGAGCTCACCTAGGCGTCCTAGCTTGAGGAAG
GAACCCCTTCTTCAAGGTTTACGCCTAGGAAGCGCACAAGCCCGATGTTGCTGTTGCAATGATAC
TACCTTGTGTTAGTTGACCGATCATGCGACAGTTACCTTGAGGTAGTTGACTGATCTTGTTAGTT
GACTGATGTTGCGATCGAGCCCCCTTCGCACCGCACCGCACTACATATGACAGATACTTCGATCG
AATCAAGTTATATGGCGGTGGGGGCCGGATCTTCCTCACTGTAGACGGGTGAGGGTGGTCAAGCA
CACCCCCGGCTATGTCTCCACCGTGTCCCAGGGTAGCGGCGTTCAAGTTCAGTTACGGTTGGAGC
CCAGTTCACTAGTTCCTTCCATAGAATCCTTCGCAATGTGACTACGAATCGACGACTTCTAGCAT
TCGTTCCTTCCATAGAATCCAACTCAACACTACCGCCCGATTGTT
Found at i:908533 original size:29 final size:29
Alignment explanation
Indices: 908487--908557 Score: 108
Period size: 29 Copynumber: 2.5 Consensus size: 29
908477 TTACGGTTGC
* *
908487 GAGGG-GGAGGAGCTTATGTAACGAAAGT
1 GAGGGAGGGGGAGCATATGTAACGAAAGT
908515 GAGGGAGGGGGAGCATATGTAACGAAAGT
1 GAGGGAGGGGGAGCATATGTAACGAAAGT
*
908544 GCGGGAGGGGGAGC
1 GAGGGAGGGGGAGC
908558 TCACCCAACA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.30, C:0.08, G:0.49, T:0.13
Consensus pattern (29 bp):
GAGGGAGGGGGAGCATATGTAACGAAAGT
Left flanking sequence: Indices 907987 -- 908486
CGGGGGAGTACTTATATGGTGGAAAGGGGGTACCCCCGAGGGTAGCCACTTCTATTCCAGTCACC
GTGTAGGCTCAACTTCACGTAGCCACTTCTATTGCATCAATCATCATGTGAAGGCAGGACAGCGT
GATGCGCCACATCTCGGCACTAGTACGTAGGCACAGTTGCCCACCCACCGGCACAAGGCCGTGCC
ACCCTGCATAAGCCATACTTTCCTGTCTCCGTGTAGGCTCCAGAGTTGGGGAATAGGTACACCGC
AACAACAACCAACGTATACATATACCCGAACCCGCTCCCACCTCCCGTTGTGCCCAATCGGGGTA
CCCCGTTCAACGGCTGCCTGAAAAGCGGATATAGAGGTACGTAGGCACAGTTGCAACCGTACTAG
TGCCACCCTGCATAACAACTAATAACAGCATACTGCTCCCATGACGTCATTCCGCTTACCACATG
AGCTTCCGCTTCCCACCAACACGACACTGGGTGGGTTACGGTTGC
Right flanking sequence: Indices 908558 -- 909057
TCACCCAACATACGACGACGTAGTTATTGACGGTGAGGTGCGGTATTAATTAATAAAATAAAAGA
AAATGCCATTGCCATATCATAGCCCCTAACACAGGAACCAGAGCTTTCCCCTTCCCTGCCTGTAG
CTTTCCAAATAAACGGCAAGGGGTTCTTCTGCCTTAGAGCGAGCGGGGGACCGTCGACATGTATG
TGCGAGGAGCGGGGTAGCAAGGTAAGTGGAGGCCTCCCAGTTCAATGAGCCTTTAGACGAGTTTA
TTGGATACCCAAGAAACATAATCTTGAAAAGAAACTGCTTCTACGGCGATCGAGAGGGGTCAGGA
AGGGCATCTCTGCTCCCTGCCCTCCAAACAGTATGGGAACCTCTTGGCTCGTACTGCTCACACTC
CCGGATCTTCGGCTGATAACCTACGTAACCCACCATAGTGTGAGAAACAGATAATGGCTTACGTA
CGACCTAATGCCTGATAGTTCCAGAACCAACCCGCCATGCGTATG
Found at i:916475 original size:27 final size:27
Alignment explanation
Indices: 916445--916517 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
916435 ACCAGTCAAC
916445 CACAGTATGGCTCAGGTTCCGCGTCAG
1 CACAGTATGGCTCAGGTTCCGCGTCAG
* *
916472 CACAGTCTGGCT-ACGGTTCCGCGTCTG
1 CACAGTATGGCTCA-GGTTCCGCGTCAG
*
916499 CTCAGTCA-GGCTCAGGTTC
1 CACAGT-ATGGCTCAGGTTC
916518 TGATTCAGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 1 0.03
27 37 0.95
28 1 0.03
ACGTcount: A:0.15, C:0.32, G:0.29, T:0.25
Consensus pattern (27 bp):
CACAGTATGGCTCAGGTTCCGCGTCAG
Left flanking sequence: Indices 915945 -- 916444
CAAGGCACTACTAGGCGAAACAGGTGGTAACAGGCGGCGGTGAAACAGGTGGTTGTTCCCGCGTA
GCCGTAACACACTTCACTTACTGTAATAGGCTACGAGGCCGATCCTCCCCTGCCGCCCGTGCCCA
CATCTCCGTCCGTATCACCTAGTATCGTCGAATTACCTGTAACACGTCTCACCGGCACATATCTG
AATTACCTAGATAGCGGCAATAGAGACACTCCCTACGTTGCGGCAGATGCGCGGGAATTCGTTGT
TGCTGGATCATGCCTCCCGTATGCAACACACGGCTCCTACACGAGTTGTCCTCTCCGCACACGTG
GCTTACTCCCCTCTCAATTACCGTACTCGCTCTCCACTAGCACTAGTTACCACTAGGCCTCCACT
AGTAGTTAGTAGTAGTAGTTGTAGCCACGGGGCCGTACCAAAGGGAAGTGGCACACCCGTCAATC
ACTGACAGGCTCAGGGGGCTCAGTAGTAGTGTTACACCAGTCAAC
Right flanking sequence: Indices 916518 -- 917017
TGATTCAGCTCCGACAGGCTCAGGCTCTGATTCTGCACTGACAGGCTAAGGTTCTGGTTCTGCTT
CCGCTCCTGCTTCCTCAGTAATCCCACCGGCGCCCCAGGCCCGCTTCCTCGGGTCCGCCATCGCC
CGGATCGACTGAGTACAGCCGGCACAGTTCCAGGCCCCAGTTCCCAGTTCCCAGTGTATCAGGGT
TCCCCAACCCTTATTCGGGGGGTTGAATTCCCGGGACCCAAACCCAACCCCTCTTCTATATAGCA
CGCACGGTGGAGGCGGTTCCCTGCCCGTCAAAGAGGGGGAAGAATACCGTATAAAAGCCCGTGCG
GGTTACCAGGCCCGTGCAATCGTACCGGGTGGGAGGGCCTCGGAGTAGGGGTCGTCAGACCCTGA
TCCAGATTGCGGGCGCGCGCCACCGCTATGTAGGTGGGGCGCGCCAGGGGGGCGGCGAATTCGCT
TACGGTATCTGGAACAAGGAGTAGGTGTCTAATGCTGTTCCTATG
Found at i:916578 original size:27 final size:27
Alignment explanation
Indices: 916505--916580 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
916495 TCTGCTCAGT
* *
916505 CAGGCTCAGGTTCTGATTCAGCTCCGA
1 CAGGCTCAGGTTCTGATTCTGCACCGA
* *
916532 CAGGCTCAGGCTCTGATTCTGCACTGA
1 CAGGCTCAGGTTCTGATTCTGCACCGA
* *
916559 CAGGCTAAGGTTCTGGTTCTGC
1 CAGGCTCAGGTTCTGATTCTGC
916581 TTCCGCTCCT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (27 bp):
CAGGCTCAGGTTCTGATTCTGCACCGA
Left flanking sequence: Indices 916005 -- 916504
GCGTAGCCGTAACACACTTCACTTACTGTAATAGGCTACGAGGCCGATCCTCCCCTGCCGCCCGT
GCCCACATCTCCGTCCGTATCACCTAGTATCGTCGAATTACCTGTAACACGTCTCACCGGCACAT
ATCTGAATTACCTAGATAGCGGCAATAGAGACACTCCCTACGTTGCGGCAGATGCGCGGGAATTC
GTTGTTGCTGGATCATGCCTCCCGTATGCAACACACGGCTCCTACACGAGTTGTCCTCTCCGCAC
ACGTGGCTTACTCCCCTCTCAATTACCGTACTCGCTCTCCACTAGCACTAGTTACCACTAGGCCT
CCACTAGTAGTTAGTAGTAGTAGTTGTAGCCACGGGGCCGTACCAAAGGGAAGTGGCACACCCGT
CAATCACTGACAGGCTCAGGGGGCTCAGTAGTAGTGTTACACCAGTCAACCACAGTATGGCTCAG
GTTCCGCGTCAGCACAGTCTGGCTACGGTTCCGCGTCTGCTCAGT
Right flanking sequence: Indices 916581 -- 917080
TTCCGCTCCTGCTTCCTCAGTAATCCCACCGGCGCCCCAGGCCCGCTTCCTCGGGTCCGCCATCG
CCCGGATCGACTGAGTACAGCCGGCACAGTTCCAGGCCCCAGTTCCCAGTTCCCAGTGTATCAGG
GTTCCCCAACCCTTATTCGGGGGGTTGAATTCCCGGGACCCAAACCCAACCCCTCTTCTATATAG
CACGCACGGTGGAGGCGGTTCCCTGCCCGTCAAAGAGGGGGAAGAATACCGTATAAAAGCCCGTG
CGGGTTACCAGGCCCGTGCAATCGTACCGGGTGGGAGGGCCTCGGAGTAGGGGTCGTCAGACCCT
GATCCAGATTGCGGGCGCGCGCCACCGCTATGTAGGTGGGGCGCGCCAGGGGGGCGGCGAATTCG
CTTACGGTATCTGGAACAAGGAGTAGGTGTCTAATGCTGTTCCTATGCCGTTACGTGAGCTTATA
TAACGTCGACTGCCTTGATACTTGTTTCTGTGTTCGCCCCCGTAA
Done.