123.fas.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_029130
Parameters: 2 7 7 80 10 50 500
Length:  978846

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449520--449549	15	2.1	15	93	6	53	13	40	30	16	1.87
450344--450387	22	2.0	22	95	0	79	15	40	38	4	1.68
452729--452760	16	2.0	16	100	0	64	18	31	25	25	1.98
457064--457102	20	2.0	20	100	0	78	35	35	23	5	1.77
459430--459454	5	5.0	5	100	0	50	40	40	0	20	1.52
461051--461086	18	2.0	18	94	0	63	27	13	44	13	1.82
469127--469173	21	2.1	23	92	7	80	19	51	10	19	1.75
469127--469168	21	2.0	21	100	0	84	19	52	9	19	1.72
469723--469764	21	2.0	21	100	0	84	23	38	14	23	1.92
469810--469838	5	5.8	5	100	0	58	20	37	20	20	1.94
470838--470901	32	2.0	32	96	0	119	34	35	10	18	1.86
476544--476581	20	1.9	20	100	0	76	39	21	31	7	1.82
481168--481197	15	2.0	15	100	0	60	20	13	40	26	1.89
483070--483114	22	2.0	22	95	0	81	24	26	31	17	1.97
484468--484517	25	2.0	25	100	0	100	32	16	28	24	1.96
490543--490657	54	2.0	57	90	9	182	26	39	20	13	1.90
491882--491913	16	2.0	16	100	0	64	0	37	43	18	1.51
493704--493759	28	2.0	28	96	0	103	50	26	17	5	1.68
494323--494400	39	2.0	39	100	0	156	23	10	46	20	1.81
494456--494530	37	2.0	37	92	0	123	29	25	22	22	1.99
496345--496424	18	5.0	18	77	22	90	15	36	30	18	1.92
496353--496404	26	1.9	28	92	7	90	13	32	30	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497481--497580	50	2.0	50	98	0	191	14	35	21	30	1.92
498215--498285	22	3.2	22	97	0	133	19	11	45	23	1.83
498841--498882	21	2.0	21	100	0	84	28	23	23	23	2.00
499847--499888	21	2.0	21	100	0	84	19	47	14	19	1.82
500763--500795	12	2.5	13	90	9	50	6	0	48	45	1.27
502633--502687	27	2.0	27	96	0	101	16	9	41	32	1.80
503714--503739	13	2.0	13	100	0	52	7	23	15	53	1.67
506944--506997	27	2.0	27	100	0	108	22	18	22	37	1.95
507366--507403	19	2.0	19	94	0	67	23	15	39	21	1.92
508972--509003	15	2.1	15	94	0	55	31	15	21	31	1.95
511641--511666	13	2.0	13	100	0	52	15	15	46	23	1.83
511868--511973	53	2.0	53	100	0	212	20	24	30	24	1.99
513172--513205	17	2.0	17	100	0	68	35	11	23	29	1.90
513199--513273	37	2.0	37	94	0	132	25	16	38	20	1.92
520718--520760	5	8.6	5	100	0	86	18	0	60	20	1.36
521511--521549	19	2.1	19	95	0	69	12	17	38	30	1.88
523809--523872	32	2.0	32	96	0	119	29	18	29	21	1.97
528930--528960	5	6.0	5	96	3	53	0	0	61	38	0.96
529047--529089	16	2.7	16	85	0	59	25	18	34	20	1.96
531093--531124	12	2.7	12	100	0	64	6	9	40	43	1.62
531118--531146	10	2.9	10	100	0	58	17	0	31	51	1.45
534534--534562	6	4.8	6	100	0	58	51	34	0	13	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534534--534571	18	2.1	18	90	0	58	47	36	2	13	1.56
541513--541539	9	3.0	9	100	0	54	33	44	0	22	1.53
542925--542953	14	2.1	14	100	0	58	17	41	0	41	1.49
543145--543174	15	2.1	14	93	6	51	26	56	3	13	1.52
547938--547969	6	5.3	6	100	0	64	46	18	15	18	1.84
547973--547998	6	4.3	6	100	0	52	0	15	65	19	1.27
548765--548859	26	3.9	26	72	25	98	17	35	24	22	1.95
549929--549964	18	2.0	18	100	0	72	33	11	16	38	1.84
551391--551440	25	2.0	25	100	0	100	16	28	32	24	1.96
552201--552234	17	2.0	17	100	0	68	29	35	11	23	1.90
552750--552793	23	1.9	23	95	0	79	34	18	13	34	1.90
553855--553892	5	8.0	5	88	11	62	21	0	42	36	1.53
553855--553892	9	4.0	10	90	10	62	21	0	42	36	1.53
553856--553892	14	2.6	14	100	0	74	21	0	43	35	1.53
555210--555283	38	2.0	37	94	2	130	33	22	10	32	1.89
557434--557478	12	3.8	12	81	0	54	44	33	22	0	1.53
557531--557568	5	7.8	5	85	5	51	15	2	57	23	1.51
557511--557562	19	2.7	19	90	3	77	15	1	57	25	1.48
557532--557582	14	3.6	14	84	5	57	13	3	56	25	1.54
558125--558158	17	2.0	17	100	0	68	17	41	11	29	1.85
558252--558312	30	2.0	30	90	0	95	11	36	29	22	1.90
560047--560084	18	2.1	18	100	0	76	21	39	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560152--560188	19	2.0	19	89	5	58	18	27	43	10	1.83
562351--562383	16	2.1	16	100	0	66	27	54	12	6	1.60
562558--562653	48	2.0	48	97	0	183	25	19	43	11	1.84
563110--563134	5	5.0	5	100	0	50	0	20	40	40	1.52
563515--563539	13	1.9	13	100	0	50	16	60	0	24	1.36
563806--563890	43	2.0	42	97	2	161	18	38	21	21	1.93
564252--564309	29	2.0	29	96	0	107	15	24	27	32	1.95
564259--564321	29	2.2	29	82	5	74	20	23	26	28	1.99
565050--565082	16	2.1	16	100	0	66	30	51	6	12	1.63
567100--567138	20	2.0	19	95	5	69	43	10	20	25	1.83
577145--577178	17	2.0	17	100	0	68	47	35	0	17	1.48
581500--581562	31	2.0	31	96	0	117	15	25	34	23	1.95
581660--581706	23	2.0	23	95	0	85	6	25	34	34	1.81
584808--584841	17	2.0	17	100	0	68	23	11	23	41	1.87
588663--588775	53	2.1	53	100	0	226	29	32	13	24	1.93
589225--589249	5	5.0	5	100	0	50	20	20	40	20	1.92
589423--589488	21	3.0	21	83	12	96	16	24	40	18	1.90
591043--591068	13	2.0	13	100	0	52	30	30	15	23	1.95
600242--600283	20	2.2	19	95	4	75	23	14	42	19	1.87
600838--600907	22	3.0	23	83	8	88	20	31	24	24	1.98
601083--601141	29	2.0	29	96	0	109	22	22	32	23	1.98
601522--601589	14	5.1	14	67	16	54	30	17	30	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601765--601821	29	1.9	29	85	3	78	21	26	31	21	1.98
602071--602124	27	2.0	27	100	0	108	11	33	18	37	1.86
603547--603628	40	2.0	40	95	0	146	18	26	29	25	1.98
605623--605660	18	2.1	18	90	9	60	15	31	28	23	1.96
612312--612364	6	8.8	6	83	8	63	15	1	30	52	1.53
612314--612370	18	3.2	18	78	9	71	14	3	29	52	1.58
612338--612364	9	3.0	9	100	0	54	11	0	33	55	1.35
612320--612390	36	2.0	36	81	10	83	18	5	28	47	1.71
614981--615005	13	1.9	13	100	0	50	24	16	36	24	1.94
616622--616649	4	7.0	4	100	0	56	0	25	25	50	1.50
617520--617559	19	2.1	19	95	0	71	12	20	40	27	1.88
618803--618828	5	5.2	5	100	0	52	19	61	0	19	1.35
619221--619250	9	3.3	9	95	0	51	33	50	6	10	1.62
619225--619254	9	3.3	9	95	0	51	33	53	3	10	1.51
620921--620971	17	3.0	17	85	0	75	21	39	29	9	1.85
626517--626596	40	2.0	40	100	0	160	17	45	10	27	1.80
627616--627646	16	2.0	15	93	6	53	19	64	9	6	1.45
627662--627718	6	9.5	6	79	7	62	10	5	31	52	1.58
630046--630120	24	3.2	25	64	21	61	29	18	25	26	1.98
632695--632738	17	2.6	17	100	0	88	20	29	25	25	1.99
645699--645740	21	2.0	21	100	0	84	23	19	28	28	1.98
647736--647767	16	2.0	16	100	0	64	18	31	18	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648220--648294	37	2.0	37	97	0	141	20	26	30	22	1.98
652902--652943	21	2.0	21	95	0	75	21	14	30	33	1.93
654205--654244	19	2.1	19	100	0	80	17	15	35	32	1.91
654210--654252	19	2.3	19	87	0	59	23	18	30	27	1.98
656498--656544	23	2.0	23	100	0	94	29	14	34	21	1.93
665125--665165	21	2.0	21	90	0	64	21	63	4	9	1.44
665136--665174	16	2.4	16	91	0	69	20	61	7	10	1.52
665310--665342	15	2.2	15	100	0	66	39	15	15	30	1.88
665400--665435	10	3.0	13	76	23	51	47	13	25	13	1.80
672775--672831	27	2.1	27	87	3	80	35	40	10	14	1.80

Tables:   1   2   3   4   5