123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_029130
Parameters: 2 7 7 80 10 50 500
Length:  978846

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224269--224304	18	2.0	18	100	0	72	11	38	22	27	1.88
230026--230095	34	2.1	34	97	0	131	32	34	15	17	1.91
231837--231917	40	2.0	40	100	0	162	23	54	9	12	1.67
249898--249923	5	5.2	5	100	0	52	0	0	61	38	0.96
250068--250107	20	2.0	20	90	0	62	35	35	20	10	1.86
251901--251974	28	2.8	25	86	11	112	20	16	39	24	1.92
251901--251977	25	3.0	25	87	10	118	20	15	40	23	1.91
252922--253042	61	2.0	60	98	1	233	29	18	41	10	1.84
254314--254354	21	2.0	21	100	0	82	19	14	21	43	1.87
261968--261992	5	5.0	5	100	0	50	0	20	40	40	1.52
262311--262343	4	8.2	4	100	0	66	24	51	0	24	1.48
265636--265732	49	2.0	49	97	0	185	29	28	20	20	1.98
270318--270378	32	2.0	31	90	9	99	16	21	32	29	1.95
271997--272087	45	2.0	45	95	0	164	15	51	15	17	1.76
275934--275989	26	2.2	26	87	6	78	41	33	14	10	1.80
276861--276912	12	4.3	12	83	9	61	55	32	1	9	1.43
279280--279314	18	1.9	18	88	0	52	8	40	25	25	1.84
281704--281752	24	2.0	24	92	0	80	42	40	2	14	1.57
283021--283114	47	2.0	47	97	0	179	19	30	27	22	1.98
284828--284853	5	5.2	5	100	0	52	19	0	61	19	1.35
285064--285105	6	7.2	6	91	2	68	45	52	0	2	1.13
286636--286667	16	2.0	16	100	0	64	37	25	31	6	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297971--298032	5	12.4	5	92	0	88	33	61	4	0	1.17
302295--302378	12	6.9	12	77	14	57	8	7	29	54	1.57
302325--302423	18	5.3	18	76	9	101	2	13	32	52	1.51
302325--302426	6	16.5	6	78	9	80	1	13	32	51	1.52
302862--302915	18	3.0	18	97	0	99	11	31	27	29	1.91
303499--303548	25	2.0	25	100	0	100	20	28	32	20	1.97
303617--303700	20	4.1	20	72	22	66	20	15	48	15	1.80
303604--303684	42	1.9	42	97	0	153	24	16	44	14	1.85
303788--303848	28	2.2	28	88	5	88	36	36	6	21	1.79
304420--304449	15	2.0	15	100	0	60	26	40	13	20	1.89
305122--305188	33	2.0	33	97	0	125	19	19	34	26	1.96
306060--306104	22	2.0	22	100	0	90	22	37	22	17	1.94
306381--306444	32	2.0	32	100	0	128	28	28	21	21	1.99
306803--306879	40	1.9	40	100	0	154	28	16	32	22	1.96
308360--308391	16	2.0	16	100	0	64	25	37	12	25	1.91
308427--308468	21	2.0	21	95	0	75	21	28	26	23	1.99
312140--312167	14	2.0	14	100	0	56	21	28	21	28	1.99
312819--312853	18	2.0	17	94	5	61	40	60	0	0	0.97
317001--317043	18	2.4	18	96	0	77	25	30	34	9	1.87
326662--326711	12	4.2	12	94	0	73	52	34	6	8	1.55
326669--326711	6	7.2	6	83	0	59	53	34	2	9	1.46
327138--327170	15	2.3	15	94	5	59	30	12	33	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327503--327554	26	2.0	26	96	0	95	30	32	7	28	1.85
329159--329190	16	2.0	16	93	0	55	12	21	28	37	1.90
330803--330838	18	2.0	18	94	0	63	27	5	47	19	1.72
332531--332560	5	6.2	5	92	7	53	43	40	0	16	1.48
333731--333796	17	4.1	17	92	7	111	18	36	21	24	1.95
338588--338633	23	2.0	23	91	0	74	23	21	26	28	1.99
338616--338683	35	1.9	35	100	0	136	14	22	26	36	1.93
340645--340720	36	2.0	37	90	10	118	18	18	32	30	1.95
341903--341951	6	8.2	6	97	0	89	48	36	0	14	1.44
341911--341977	12	5.6	12	85	7	64	46	35	5	11	1.65
341985--342024	6	6.7	6	94	0	71	0	47	32	20	1.50
342950--343054	50	2.0	53	90	9	171	12	20	40	26	1.88
348570--348608	19	2.1	19	100	0	78	15	30	15	38	1.88
348930--348998	23	3.0	23	100	0	138	13	47	13	26	1.78
349670--349816	71	2.1	71	97	0	276	15	36	20	27	1.93
349970--350007	19	2.0	19	100	0	76	36	21	15	26	1.93
350680--350751	36	2.0	36	97	0	135	31	33	20	13	1.92
351112--351148	18	2.1	18	100	0	74	21	27	32	18	1.97
352466--352551	43	2.0	43	100	0	172	20	30	27	20	1.98
353448--353531	42	2.0	42	97	0	159	21	19	36	22	1.95
354179--354218	20	2.0	20	100	0	80	40	35	10	15	1.80
354616--354669	27	2.0	27	100	0	108	29	18	33	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354652--354688	19	1.9	19	94	0	65	29	29	21	18	1.97
356656--356685	15	2.0	15	93	0	51	13	63	6	16	1.50
357126--357162	4	9.2	4	93	0	65	48	24	0	27	1.51
358295--358344	26	1.9	26	87	0	73	4	30	32	34	1.76
358324--358363	20	2.0	20	90	0	62	0	35	30	35	1.58
359486--359521	5	7.2	5	100	0	72	38	0	61	0	0.96
360337--360369	16	2.1	16	100	0	66	30	51	6	12	1.63
366433--366467	3	12.3	3	88	11	56	31	0	37	31	1.58
366435--366469	16	2.1	17	94	5	63	34	0	37	28	1.58
369176--369244	21	3.2	22	64	16	54	14	14	50	20	1.77
369166--369249	42	2.0	42	97	0	159	16	17	45	20	1.86
369307--369414	57	2.0	55	87	10	161	29	23	34	12	1.92
371245--371269	3	8.3	3	100	0	50	64	36	0	0	0.94
388168--388213	24	1.9	24	100	0	92	36	34	21	6	1.80
388201--388292	48	1.9	48	100	0	184	25	33	21	19	1.97
389074--389127	24	2.3	24	84	9	67	29	37	5	27	1.80
389085--389143	24	2.5	23	89	5	91	30	30	5	33	1.79
390981--391047	33	2.1	33	97	2	127	26	37	16	19	1.93
391742--391788	22	2.1	22	100	0	94	31	42	12	12	1.81
391951--391992	21	2.0	21	95	0	75	14	40	23	21	1.90
394570--394616	23	2.0	23	100	0	94	25	23	17	34	1.96
395000--395049	25	2.0	25	100	0	100	16	40	16	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395605--395668	20	3.3	20	68	24	55	28	28	26	17	1.97
395605--395680	38	2.0	38	97	0	143	28	30	26	14	1.95
397730--397844	56	2.0	57	93	5	196	22	38	13	25	1.91
398062--398093	16	2.0	16	100	0	64	18	50	6	25	1.70
400191--400231	20	2.0	20	95	0	73	26	17	36	19	1.94
404567--404612	23	2.0	23	100	0	92	34	8	17	39	1.80
405105--405160	25	2.2	25	93	0	94	19	28	33	17	1.95
405907--405938	16	2.0	16	93	0	55	12	0	53	34	1.39
410223--410268	22	2.1	22	95	0	83	28	15	26	30	1.96
413791--413896	47	2.2	47	98	1	203	33	27	23	15	1.94
415349--415377	5	5.8	5	100	0	58	37	62	0	0	0.96
415383--415413	5	6.2	5	100	0	62	38	19	19	22	1.93
417094--417129	18	2.0	18	100	0	72	33	27	16	22	1.95
417934--417994	31	2.0	31	96	0	113	26	29	31	13	1.93
418085--418120	18	2.0	18	100	0	72	22	27	22	27	1.99
419848--419885	20	1.9	20	88	0	58	18	21	31	28	1.97
420252--420290	3	13.0	3	100	0	78	0	0	33	66	0.92
424831--424897	6	11.2	6	87	9	50	16	4	29	49	1.65
425069--425124	28	2.0	28	82	6	69	17	35	23	23	1.95
425509--425535	14	1.9	14	100	0	54	14	22	40	22	1.90
427340--427369	15	2.0	15	100	0	60	6	13	33	46	1.69
427723--427799	25	3.1	25	98	0	145	20	31	7	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429168--429195	11	2.5	11	100	0	56	28	21	32	17	1.96
429674--429741	34	2.0	34	97	0	127	13	17	51	17	1.76
435265--435332	33	2.1	33	88	5	102	23	23	35	17	1.95
436777--436838	22	2.8	22	95	0	115	27	30	30	11	1.91
441213--441252	3	14.3	3	85	15	59	35	65	0	0	0.93
445578--445612	18	1.9	18	100	0	70	22	11	34	31	1.90
446970--447015	25	2.0	22	84	16	58	30	45	10	13	1.77
448243--448271	15	1.9	15	100	0	58	37	27	6	27	1.82
448851--448890	21	1.9	21	100	0	80	15	35	22	27	1.94
448944--448971	5	5.6	5	100	0	56	21	17	39	21	1.93

Tables:   1   2   3   4   5