Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029130
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 978846
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
File 1 of 5
Found at i:3846 original size:5 final size:5
Alignment explanation
Indices: 3836--3867 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
3826 GCATTCCTGT
3836 CGTCA CGTCA CGTCA CGTCA CGTCA CGTCA CG
1 CGTCA CGTCA CGTCA CGTCA CGTCA CGTCA CG
3868 CCCACGTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.41, G:0.22, T:0.19
Consensus pattern (5 bp):
CGTCA
Left flanking sequence: Indices 3336 -- 3835
CCCGGCCGAAAACCGCATGAGGAATCAGAGAAATCTATGTCATATATCAACCAGAAGGCCAGCTT
AGTATAGCGCGTTGGACAAAACGGTCGCGTACAGTGGGTGGGGATTGTGCACGGGGCGGAGACTG
GGCTTCCCGGGTTTGGTGGGAATCAATATCCTGTGCATAGGTTGCCATTGGGAGCAACCGGCCTT
CTTTACTGCTTCGATCTGGAAACCTCTATTCCTTCCCACCTCAATAACATAACGGGAAATGTGGA
TGTGTCAAAGGGTTCGTAGAGATAGTTCGTTATATTCAAATAAAGAAATTAATTATCACACTCCC
GTAGGTTGTCGGGGTCATAGTACCGCGTCTACACTGAAGGAGCCAGAGCTACGGGTAATCGATTG
ATACTACACCCCACCTCCCTAGAAGCAAGGTGGTTAACCCCGCATTATTGCTACGTCGACCACCT
GGCCGTGAGGCTTTCCCGGGGGATGTGTTCTTTAAGCATTCCTGT
Right flanking sequence: Indices 3868 -- 4367
CCCACGTCAATATGGTTGTTGTTGGAAGCGGAAGCGGAAGCGGAAGCGAAGCAGGTATAACGCCC
TCTAACACTTGAAAGGAGCCGGAGCGAGGCACTTGAATGTACGGTTATCGACCGCTCTAACACTT
GAAGGAGCCTGAGCGAGCACGCAGGGGGACCGTGGAACTGACGGTGCAACAGCAGCCCGGGGTCA
GGGTAGAACAGCAATGGGATCCGCACTTACCGGATGGATGGCACAGCCCGCATTGTAAGGTCGCG
CTCACGTTGGTGGGGGATGGGCTCCGCACTTACCGGCCATGGGACAGCCCACATTGTAAGGTTGC
GCTCACGTTGGTGGGCTCGTAAACTAGATTGATGATAGTTGATGTACTACCCTACCGTGCGTTAG
TTATCGAATGTAGAGAGCGGTAGCACAGGTTTGCATAGACCATATACGTACCAGATTGATGATTA
TTCTAGCTGTCTAGTTGCGCATGCCCGAAGCCGGTGGAGGATGAT
Found at i:3900 original size:6 final size:6
Alignment explanation
Indices: 3891--3919 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
3881 GGTTGTTGTT
3891 GGAAGC GGAAGC GGAAGC GGAAGC -GAAGC
1 GGAAGC GGAAGC GGAAGC GGAAGC GGAAGC
3920 AGGTATAACG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.34, C:0.17, G:0.48, T:0.00
Consensus pattern (6 bp):
GGAAGC
Left flanking sequence: Indices 3391 -- 3890
AGGCCAGCTTAGTATAGCGCGTTGGACAAAACGGTCGCGTACAGTGGGTGGGGATTGTGCACGGG
GCGGAGACTGGGCTTCCCGGGTTTGGTGGGAATCAATATCCTGTGCATAGGTTGCCATTGGGAGC
AACCGGCCTTCTTTACTGCTTCGATCTGGAAACCTCTATTCCTTCCCACCTCAATAACATAACGG
GAAATGTGGATGTGTCAAAGGGTTCGTAGAGATAGTTCGTTATATTCAAATAAAGAAATTAATTA
TCACACTCCCGTAGGTTGTCGGGGTCATAGTACCGCGTCTACACTGAAGGAGCCAGAGCTACGGG
TAATCGATTGATACTACACCCCACCTCCCTAGAAGCAAGGTGGTTAACCCCGCATTATTGCTACG
TCGACCACCTGGCCGTGAGGCTTTCCCGGGGGATGTGTTCTTTAAGCATTCCTGTCGTCACGTCA
CGTCACGTCACGTCACGTCACGCCCACGTCAATATGGTTGTTGTT
Right flanking sequence: Indices 3920 -- 4419
AGGTATAACGCCCTCTAACACTTGAAAGGAGCCGGAGCGAGGCACTTGAATGTACGGTTATCGAC
CGCTCTAACACTTGAAGGAGCCTGAGCGAGCACGCAGGGGGACCGTGGAACTGACGGTGCAACAG
CAGCCCGGGGTCAGGGTAGAACAGCAATGGGATCCGCACTTACCGGATGGATGGCACAGCCCGCA
TTGTAAGGTCGCGCTCACGTTGGTGGGGGATGGGCTCCGCACTTACCGGCCATGGGACAGCCCAC
ATTGTAAGGTTGCGCTCACGTTGGTGGGCTCGTAAACTAGATTGATGATAGTTGATGTACTACCC
TACCGTGCGTTAGTTATCGAATGTAGAGAGCGGTAGCACAGGTTTGCATAGACCATATACGTACC
AGATTGATGATTATTCTAGCTGTCTAGTTGCGCATGCCCGAAGCCGGTGGAGGATGATATAGACT
CAGAGGGGATGGTGCGTTAGAAGCCGGTGGTAGATGACAGAACCT
Found at i:4195 original size:66 final size:67
Alignment explanation
Indices: 4076--4207 Score: 194
Period size: 66 Copynumber: 2.0 Consensus size: 67
4066 TAGAACAGCA
** *
4076 ATGGGATCCGCACTTACCGGATGGATGGCACAGCCCGCATTGTAAGGTCGCGCTCACGTTGGTGG
1 ATGGGATCCGCACTTACCGGA-CCATGGCACAGCCCACATTGTAAGGTCGCGCTCACGTTGGTGG
4141 GGG
65 GGG
* * *
4144 ATGGGCTCCGCACTTACCGG-CCATGGGACAGCCCACATTGTAAGGTTGCGCTCACGTTGGTGGG
1 ATGGGATCCGCACTTACCGGACCATGGCACAGCCCACATTGTAAGGTCGCGCTCACGTTGGTGGG
4208 CTCGTAAACT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
66 39 0.67
68 19 0.33
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (67 bp):
ATGGGATCCGCACTTACCGGACCATGGCACAGCCCACATTGTAAGGTCGCGCTCACGTTGGTGGG
GG
Left flanking sequence: Indices 3576 -- 4075
AACATAACGGGAAATGTGGATGTGTCAAAGGGTTCGTAGAGATAGTTCGTTATATTCAAATAAAG
AAATTAATTATCACACTCCCGTAGGTTGTCGGGGTCATAGTACCGCGTCTACACTGAAGGAGCCA
GAGCTACGGGTAATCGATTGATACTACACCCCACCTCCCTAGAAGCAAGGTGGTTAACCCCGCAT
TATTGCTACGTCGACCACCTGGCCGTGAGGCTTTCCCGGGGGATGTGTTCTTTAAGCATTCCTGT
CGTCACGTCACGTCACGTCACGTCACGTCACGCCCACGTCAATATGGTTGTTGTTGGAAGCGGAA
GCGGAAGCGGAAGCGAAGCAGGTATAACGCCCTCTAACACTTGAAAGGAGCCGGAGCGAGGCACT
TGAATGTACGGTTATCGACCGCTCTAACACTTGAAGGAGCCTGAGCGAGCACGCAGGGGGACCGT
GGAACTGACGGTGCAACAGCAGCCCGGGGTCAGGGTAGAACAGCA
Right flanking sequence: Indices 4208 -- 4707
CTCGTAAACTAGATTGATGATAGTTGATGTACTACCCTACCGTGCGTTAGTTATCGAATGTAGAG
AGCGGTAGCACAGGTTTGCATAGACCATATACGTACCAGATTGATGATTATTCTAGCTGTCTAGT
TGCGCATGCCCGAAGCCGGTGGAGGATGATATAGACTCAGAGGGGATGGTGCGTTAGAAGCCGGT
GGTAGATGACAGAACCTGGAGTGAGGCCTGGCCAACTGAGAGCGAACATGTGTTCCCGAGCATGT
ATTCGAATATCAGATCGGGTATGTGTTACTGTGTTTGTTCCCCTATGTAGCCCTAACCGGGTAAT
TAGTGAGGCGAGGCTTATCTCGTTATAGTGAGTTCCCTGGTCATGGAGCAAACTGACCTGTCATC
ACACTGCCCGAATCATGGCGCCTCCTCCTAGGGTGGGATCTCTACCTTTAGGACGGCTATGGTAT
GGTCGTTAGGCTCCCCGTGAACTAGGAGCTGTACCTGAGTGGCAT
Found at i:6983 original size:5 final size:5
Alignment explanation
Indices: 6973--7012 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
6963 TCTTCCACCA
6973 CCTAC CCTAC CCTAC CCTAC CCTAC CCTAC CCTAC CCTAC
1 CCTAC CCTAC CCTAC CCTAC CCTAC CCTAC CCTAC CCTAC
7013 ATAATGCGGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
CCTAC
Left flanking sequence: Indices 6473 -- 6972
TGGATCTCGGAAAGCTTCACCTGAGCCCATGCGTCGATGAGGTTGTTCAGCGGGTCTGCCTCCTA
TCTCAAACGACTCAACGGCGACTGAGTTGGAACTCGGTCCGGTGACGTGTGCGAATACGGAACGC
GCACCGCAGGGGAAAGGGTGGGGTTAATTACGGAGGGGTAGGTACCCCCGGGATACGGCTCGAGC
TCCAATCGAACACGGTATGGCGGAAACTCCGAAAGCAGCAGCGCAGCCATGTACGGTACGGTACC
GCTGCTGTTCAATCTGAAGCTGATACTCCTCCCAATCACGTAGCTGCTTCAGTTCTGTCCATGCC
TAACCTCCATGAGGCAACGCCTTACTAGAAAACCCTGGTCGTCAAGATGTAACTAGGGTGGTGGG
AGATCAATGGGAGATCATTTACTCGGGTCAGTTACGCTGTTGGCGGGGTTGTACGCATGCTTTTT
CTGTGTTGCTGGCACCGCTCTTCAAAACCTGCCGCTCTTCCACCA
Right flanking sequence: Indices 7013 -- 7512
ATAATGCGGGCGGGCGGGCGGCGGCGTACTGCCTGGATCGTATCGTAGAGCCTTCTGTTACACGG
GTCAACGCGGTTTGGAAGGTGGTTGGCCCGGTAACGTACGCAGTAACCAGTAACGTACAAAACAG
TAGGACCAACTGCGGGCAGCCCGATTCCCCTACAGACAGTAACAATCGGGGTGGGCTAGGACGTA
GGCACTTGGAGCGTAACAGATCCAATCGCTGGAGTTCTGAACAAGGTCGCCTGGTAGCGGACTTC
TAGCAAAGGGTGCCCCTAGCCAGAGGGAGTTCAGAGTTCTGTACAAAGGGTAGGGCCGCGGGTGT
AGCGTAATGGGGCATAACCAGAGGGAGCAGCCTAGTGCGTAAGGGGGGTAATGACGCTCCTGCGT
ATATCCCCGCTCCTCCATGCTACTGCATTAAACCGTGGTTGTGAATCTGGGGCGGTCTGGTCTCA
GTCACGTAAGAGTTCAACTAGATCCGTAACTAGGGGTGATCGTGC
Found at i:9736 original size:18 final size:18
Alignment explanation
Indices: 9713--9749 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
9703 TGACTATAAC
9713 GGAAGAGTGGATACCGAG
1 GGAAGAGTGGATACCGAG
9731 GGAAGAGTGGATACCGAG
1 GGAAGAGTGGATACCGAG
9749 G
1 G
9750 AGTGAGCGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.46, T:0.11
Consensus pattern (18 bp):
GGAAGAGTGGATACCGAG
Left flanking sequence: Indices 9213 -- 9712
TCTCCGTGGAGACGAGAATATGTAGCTGTTGACACTGACGACAACAGCCTTTACCGTCCTCATTA
GTACGTTATCGTCCCATCCCGAATAGCCGGGCAACACTCGAACGCCCCTTTATGACTATGCACAA
GGAAATCAGACCCGACTGCCAACGTACGCAACTTGATAAGCGTACGGCATTGTACGGTGGGGGGT
TGCGCTGGGAGTTGTTGATGGTGTCACACTAGACGTGGTAACCTACGGGCTCCTCACTCCCCCGG
AACCAGTTAGTGGGGGCGGTCGAAGTGCGAAGGCGAAAGCCCACCCAATTCCCGACGGCGTTAAC
TGCCAACGACGTAGACCTGTCCCCCGATACACGAGATGGCATAGGTGCACATGGACTGTGAAACC
CCTATCCACTAGTCTCAACACACAACGCGCCGCTGCGTCAATATGGTGGGTGGGGTATGGTATGG
TATGGAGCGTGGACGAACAGATATATTGACAGAACTGACTATAAC
Right flanking sequence: Indices 9750 -- 10249
AGTGAGCGTGCTATCCCGGCCCGGGGCAGAGACCGGTGAGACAGTTGCTCTTTACTAGGTGGCCC
AGAGCGGCCGAATCCCCCAGCTCCTCCGGTGCGAAACCCCACTAACGCCGGGAGGCGGACGACAG
ACCATATCATATATATTCGCTCCATCCGTATGCGGAGGCGGACGACAGACCATATCATATATATT
CGCTCCATCCGTATGCGGAGGCGGACGACAGACTAAGGGCCTTTATAGTACTTGCGGTGAATAGC
GCCTACATTGGCACGGCGGGTGTACGTAGGTAACTCCGGTTGTACGTCATGCAGGAGTTGGGTTG
TTGCACGGTGGAGAAAGCACGTCCAGCGCGACTCCCACCGAAGAGCTGTGCTAGTTAGTGGGCAA
CGGGTACGACGGGTACCTTTTGTCTGCGGAAGTGCCAGCTGCCCCAACCCTATGTGCGAAACATC
CGACGTCCCTCATCGCATCACAGCGGCAACCCCTAAACGCTGTCA
Found at i:9936 original size:48 final size:48
Alignment explanation
Indices: 9865--9977 Score: 226
Period size: 48 Copynumber: 2.4 Consensus size: 48
9855 ACTAACGCCG
9865 GGAGGCGGACGACAGACCATATCATATATATTCGCTCCATCCGTATGC
1 GGAGGCGGACGACAGACCATATCATATATATTCGCTCCATCCGTATGC
9913 GGAGGCGGACGACAGACCATATCATATATATTCGCTCCATCCGTATGC
1 GGAGGCGGACGACAGACCATATCATATATATTCGCTCCATCCGTATGC
9961 GGAGGCGGACGACAGAC
1 GGAGGCGGACGACAGAC
9978 TAAGGGCCTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (48 bp):
GGAGGCGGACGACAGACCATATCATATATATTCGCTCCATCCGTATGC
Left flanking sequence: Indices 9365 -- 9864
CGTACGCAACTTGATAAGCGTACGGCATTGTACGGTGGGGGGTTGCGCTGGGAGTTGTTGATGGT
GTCACACTAGACGTGGTAACCTACGGGCTCCTCACTCCCCCGGAACCAGTTAGTGGGGGCGGTCG
AAGTGCGAAGGCGAAAGCCCACCCAATTCCCGACGGCGTTAACTGCCAACGACGTAGACCTGTCC
CCCGATACACGAGATGGCATAGGTGCACATGGACTGTGAAACCCCTATCCACTAGTCTCAACACA
CAACGCGCCGCTGCGTCAATATGGTGGGTGGGGTATGGTATGGTATGGAGCGTGGACGAACAGAT
ATATTGACAGAACTGACTATAACGGAAGAGTGGATACCGAGGGAAGAGTGGATACCGAGGAGTGA
GCGTGCTATCCCGGCCCGGGGCAGAGACCGGTGAGACAGTTGCTCTTTACTAGGTGGCCCAGAGC
GGCCGAATCCCCCAGCTCCTCCGGTGCGAAACCCCACTAACGCCG
Right flanking sequence: Indices 9978 -- 10477
TAAGGGCCTTTATAGTACTTGCGGTGAATAGCGCCTACATTGGCACGGCGGGTGTACGTAGGTAA
CTCCGGTTGTACGTCATGCAGGAGTTGGGTTGTTGCACGGTGGAGAAAGCACGTCCAGCGCGACT
CCCACCGAAGAGCTGTGCTAGTTAGTGGGCAACGGGTACGACGGGTACCTTTTGTCTGCGGAAGT
GCCAGCTGCCCCAACCCTATGTGCGAAACATCCGACGTCCCTCATCGCATCACAGCGGCAACCCC
TAAACGCTGTCAGGCATGAGCTCTGCAGATCTGTGATCGCTGTGCCTACGGTGGGGAAGGGTACA
ACACGTCCATCGGTGTTCTAATCCTCAACCCAAGTGGTTAGTATCATCGAAGTAGGCACGTATCC
TCTGGTACGACGACCGTTTACGCGGTCAGGTCGTTCTCTTCATTGTTGTATTTGTGCCGGGTCAT
AGAAGTCGATACTTCCTCGGTCTAAGGGCATACTTGTGACGCTGA
Found at i:12558 original size:15 final size:15
Alignment explanation
Indices: 12534--12575 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
12524 AAGCAGCGGA
*
12534 CATCGGTCCGCCCCT
1 CATCGATCCGCCCCT
*
12549 CATCGATCCGCGCCT
1 CATCGATCCGCCCCT
12564 CATCGATCCGCC
1 CATCGATCCGCC
12576 TGGTAGTCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.12, C:0.50, G:0.19, T:0.19
Consensus pattern (15 bp):
CATCGATCCGCCCCT
Left flanking sequence: Indices 12034 -- 12533
CACGGGGAGGGAGCAGGCGAAGCGTGTCGTTCGCAATGGAAGGAAAGATACCACTACGAAGCCGA
TATGTTTCGCCGGCGCGAACACAGCGGTCTCTGACCCTCTGTTGGACCGGGAACAAATTCGAATT
TGGATCTCGACATGTTGGTGGTTAAGTACCGTAGGCATCTTGCTAGGAAGTTGGTGGGCTTATCA
TGAATTGGGTTGGGGTGGCTGGTGGTTTTGGGATCCCGTAGAAAATGCTTCTCTTATGCCTTGGG
TAAACGCAACAGCTTGTATTCATTCAGTCAAACTACCCAAAGCGTCAATATGGACCTTGTTTCTA
TCAATTGTGACTTTGAACTGCTGTGTAAGCGGAACAACTTTGATACGGTCCGGATTGCTAACTTC
CGTTCATAGTTTTGCTGCGGAAACTACCCGAGGAATAACACTGCTATGGTGGTTCTTCCTTCTAA
TTACCGGCATATCCCTGATCCTCTTATCCCAGATGAAGCAGCGGA
Right flanking sequence: Indices 12576 -- 13075
TGGTAGTCAGTTTCGGGGCGCGCACTAGTCCTGGCCCGGCAAGGGCGTACATCATGTGTTGTCGT
TCCCGCTCCGTTGATGCGGTGGGTGAGAGCAGAAGGGGTAACTCAGTACTAACTGTTCGCCCGTA
ACCCCAAGGCGCAGTTACCCCCCGTACCGTACCGTACATAGTGGTGGGTGGTGGTGTGGTGGTGC
CGGTGCAATGTACAAAATCCATACCAACCTATGGTTCTACCCTCCCGTACAACCCCGGTACCCCC
CGTACAAGGGCGGCAATAACCAATACAAACTAGAAAGCAGTGTGGACACGTATGAAAGAATTTGG
GCGGCCGGGGGAGTACTTATATGGGGTTCGGGGGTACCCCCTGTTTCCAGTAGGGTTGGTATAGC
AGCGTTTATCGTAGACTGCCTTTATGGCTTCACACGGGAGCCGCGGACCCCCACGTTTCATGAAG
CTCTCTCCCCAGCGTAACAACACGTAACTATTATATAATATACGG
Found at i:15742 original size:5 final size:5
Alignment explanation
Indices: 15732--15762 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
15722 CAAGTGTGGG
15732 ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT A
1 ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT A
15763 TAAGGCAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (5 bp):
ACCAT
Left flanking sequence: Indices 15232 -- 15731
GGGTAACGGGTTACGACTCTGAAGTTACCCCAGTTACGGAGCGAATCCCATATATGCCATGCCAA
CCAGGTCCTGCCTCCACCCGGTCAAGGCCCCGGGCAATAACCGGCATACTGGTAACTAGCGATAG
CGTTTTCCAGGGAAAGGGGAGATCGCCTTGGGCTGTAACGGAAAGGCGGTAATTCGCCTTGCGCC
GTATACAACGAAAACGGGGTAACAACGCCTTCGGGGTAACGCCTTGCGCTGGTGGGTAACGCGAC
AACCTTGTAACTTATTCTTATTGTGTGTGGTCTCAACAGGACGGAAAGGTTGGACTCTTACGTGT
AGAACACTCGCCGAACTAGGCCGAACCACGTCATGCATGTTAGATGCATGTTCATCCTTCATGGA
GTGAGGTTAACAAGCACTCACTCAGCAAGCGCGCCGCCTCTACTCGAAGACCCATCCTTGAGTGC
GTGCCCGAAGCCGGGCTGGTTTCCGTACTTCGGAACAAGTGTGGG
Right flanking sequence: Indices 15763 -- 16262
TAAGGCAACCGAACTGTGGGGGTTCGGGGGTACCCCCTTTGGTGGGCGGCCCACGGGGTAACAAC
TACAAGGTGAGATCAGTCACCGAACCCGTACAAACGCCCCCCGCATACCACTAGTACAAGGTCAT
AAATGCTCGCTATAGACATGATGAACTGGAAACAACAACTCGATCACATAGCTGGTTCAACCAAC
AAGATTGGGGGGTTTCACATCTCTCAATGGCCGGAAACTCGAGTAACGGAGGGAGCCCATGTACA
TCACATCAGATTCTTTGTAAACGCTACCAAGATCAGTATGGTATGTCTCAATGAGCAGTACGAAG
GCAAGGTAGGTAGAGACCCGAACCGGATTCCCTGCAGAAACGCAGCCATATCGGCCTTTCGTACT
TGGCCACGGGTTACCAAGTGAGGTAGGTAAGGCCAGATCGGATCGGAGGTAGACTCAGCGCAGTG
CACCACGTACTGGCTTCATAGCCGGGCATTGGGGGAAGGCCGATC
Found at i:19742 original size:44 final size:44
Alignment explanation
Indices: 19693--19776 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
19683 AACCAATACA
19693 ACCTACGTAACTGAGCTTGCGACTCCATGTCGTCCGCTCCTACG
1 ACCTACGTAACTGAGCTTGCGACTCCATGTCGTCCGCTCCTACG
19737 ACCTACGTAACTGAGCTTGCGACTCCATGTCGTCCGCTCC
1 ACCTACGTAACTGAGCTTGCGACTCCATGTCGTCCGCTCC
19777 CGCACATGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.18, C:0.37, G:0.20, T:0.25
Consensus pattern (44 bp):
ACCTACGTAACTGAGCTTGCGACTCCATGTCGTCCGCTCCTACG
Left flanking sequence: Indices 19193 -- 19692
TAAATGCCTCCGACCATGTCCCAGTATGGAACTGGGTTGGCTGTCTTGTACGGGGGGTATGCGGG
GGGAAGCGTAATGGGGTTCAGTTACCGGACTGTGAAGGAGTAGGAATGTTGTTTTCGTACTTACC
CCTCCGTACCGAACGTCTATCGATTTCCGTTTAGTCAGTCAGGAATGAGGCGGCTGACGCTGGAG
TAGCTGAGGCTGCTGGCGGCCTGTCGGCGTGTACGTATGGTGACACGCACAATGTGTACGGATCA
CTTTGATCACGAGTTTCAAATGCGGTTTGAATCCCGCCATTGACGTAAGTGTATCAGCTTGTAGT
TTCAAACCGTAACCGGGTGTGGGGGAAGATGTAGCTTGCCCCCCGAATACGGCAGAAGCAGGCGG
CTCTTTCAAAGAGGGGACCGGGGAAAGGCCAGACGCCCGTAACATTCCATAGGTAATCAGCGTAT
ATAAACTCTACCCCGGCATACACTCCACGCCGATAAACCAATACA
Right flanking sequence: Indices 19777 -- 20276
CGCACATGGTCTTTCCTGTGGATTCTCTCAACCTACAGGACCGGGTCGAGCTGCAGTTGACTACA
TGTTTCCACCATACCATACCATATAGCCAGAAGGAAGGAAGAGCTATGGTGGTTTCGTATATACA
ACACGAATCACTCAATACACGCGAGTCTGACCTTTATGTAGGCTTCGAATACGGGCCCCACCGTA
CGTCAATAACGACGAAGGAAGCATCGAATCACGATCGGAAATACTAGGGAAGCATCGACAGTGTC
GAAAAACACGGGGTTTAGACCGGGCATTCGAATGATCCACACCACACAACACCATGTTCCTGACT
GGTTTTCAACGTTATGAAACTGGCCACATCGTGGATGGCCCGAATTCTTGTGTTCCCCTACGTAC
GTACTCCAACAAACCCCTGTACGGGGGGCGGCGTCTACAGGGGCCAACTACATAGGCGGGGGCGC
GCGCAGACAAACGGTCCCTGCTGACCGGTTACCCATGCTTGCTTC
Found at i:21204 original size:14 final size:14
Alignment explanation
Indices: 21185--21211 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21175 TCACGGATGA
21185 GCCAGCGACTACGG
1 GCCAGCGACTACGG
21199 GCCAGCGACTACG
1 GCCAGCGACTACG
21212 TAGTGATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.37, G:0.33, T:0.07
Consensus pattern (14 bp):
GCCAGCGACTACGG
Left flanking sequence: Indices 20685 -- 21184
CTACGATAACTAAGAGCCACCCAGAGCTGCGCCGATTCCCGCTTCGCCCGCCGGGTAAGCTCTAA
CCATCGTCATAGCAACCGCCCCAACTACGACGTTTGTGACTCGAAGCAAACGATGCTTGCACCGA
ACTGGTCCAGCAGAAAGGCCCTCGGGGGTACTGGGAGTAGGGCGCGAATTACGGCAAAGCAACAA
CAACGCACACGCGACCATAGGCGGTTATTGTGGGGATCGGCGGCCATAAACACCTCTCACAGCCA
TCACGCGTACTTCATAAACAATTCCAACGCCGGACCGGAAGGACCGCGAACCCGAAGCGTATGTA
CACCCCATGCTAGCAGTCTAGCCTACAGCCCAGCTCCAACAGCGAAACCCGCTCCGCCGCAAGCA
CAGATGCGGACAATGCATCGAGCAACCAGCACATCCCTACACGCCACACACCATTCGAGTACGCC
CACGTACCCAATCCAACGCTCTTCCAATACCCCGCTCACGGATGA
Right flanking sequence: Indices 21212 -- 21711
TAGTGATTAAGTAGAAAGGTCCAAGTAACCGAATAAGCGATATTAAGGAAGGGCCGCACCGCGGC
TGAATACGAGACCGCAGCGACGCCTCGGAATTGAGTTGTAGCTCCTTCAAACGCCACTCCCGGAA
AAGCAACTCCGGGGGCAGGTTGCGCGCCCATCTTCGGTGGAACATCAATACCTCGCAGTCGTCGT
GGAAGATGCCGTAATACGAAAGGGCGTAAACGCATTGACCCCCACCGTACGTCAATAACGTTCAA
GCGAGAAGCCAACTCGAATGGGTGGGGTAGGAACCATACGTGCGATGAGACCCACCGAATCAACT
GAACGTGAAATGAACCGGGGTAACTGGGGCATACGTAAGCGAAGTCGTTCCCCGCGGCTCAAGGG
ACTAGTTACAAAGGCACTTGAGGCCCATTGTAAACTGCGGTTGTAGGCGCAGAAGAGGGACTTTC
ACGAACCCATGAGGAGCCCACTCACTCACATGCACGCCACCCCCG
Found at i:27678 original size:13 final size:13
Alignment explanation
Indices: 27660--27685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27650 AGCGTACTAC
27660 ATATAGCATTGCA
1 ATATAGCATTGCA
27673 ATATAGCATTGCA
1 ATATAGCATTGCA
27686 GTAACCGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATATAGCATTGCA
Left flanking sequence: Indices 27160 -- 27659
CCGCGTCGCTGGAATAGCCCGATCGTAACCTTCATGAGCTCATGGAGGATTGCGTCTCCAATCGG
ATCATGCCACCTCTTACGGCAGAACGTCAATGTGGGGTGCGGCAAAAGGGGCTTACTTCGATAAG
TGCACGTATGGGGAAGTCTACAGCCGTATTCGGGGGTATGCGGGGGGCAGCGTCTACAGGGCGGC
TCATTGATCAGGTGGATACAAGACGTCTATTCAGGTCTCACTTTCCAAGTGGGTGAGGCAGGGCC
TCGGCGCCTTCGTCCTCTCCAGCAGCCAGACTGCGACAGGAACCTAGTAAAGGCTAGCTGCATAA
CCGTACGGTAAGCCAAATCACCATAATCAGTAGAGCTACGGATGGTCATACTCCAAGTACAACGG
CATTGACTTTCATAAGATCATAGAAGGCAACGAGTCGCTTGTCTCAAAGAAGCAGTTGTGCGAAT
GGGTCAGTCGTACGATATCGTAGTTATGTACTTGAAGCGTACTAC
Right flanking sequence: Indices 27686 -- 28185
GTAACCGCACGAACATCTGTTATAATGTAACACGAGCTGATCGGTATTTCGTAAACAACGACCAT
ACTATATTACCATACTGCACTATACTACCTGCTTCGTTGCCGGCTGGATTCACCTCACCGGATCT
ACTCCCCGTATACTCTGGATGTGTTTTGACAATCACTTCAAACCAAGCATTAGACCCGCCCACGC
TTATGTGGCCGTACACAGGGGTTGGGTGGGTTGTTGCGGTATCAGTTGTGTACCCACATACACCC
ACCCTGGTAGTTACGTGTGTTTCGGAGCCCACATTGACGTTCTGTTCGTGGGGGTAGTTACGTAG
TCCTGAACCTGCAACTTCACTGTGCCGCTCACTTAGGCGGTAGGGCGTTCTTTCCCATATGTGCA
GTTATGTATGGACCAGTCTTCTTCCCATAACCAACCCATTTACGGTTACCCCACCAAGTGCCGGA
GACGAAGGGTGGCTTCCCCGGTTATGTGCCCCATCTGCCGGAACA
Found at i:28858 original size:33 final size:33
Alignment explanation
Indices: 28816--28878 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
28806 ATGCTCAATA
*
28816 GTGCGTTTCGCCCGACGAGTGGGTGGGTGTGAC
1 GTGCGTTTCGCCCCACGAGTGGGTGGGTGTGAC
28849 GTGCGTTTCGCCCCACGAGTGGGTGGGTGT
1 GTGCGTTTCGCCCCACGAGTGGGTGGGTGT
28879 TTTCTGGGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.08, C:0.22, G:0.44, T:0.25
Consensus pattern (33 bp):
GTGCGTTTCGCCCCACGAGTGGGTGGGTGTGAC
Left flanking sequence: Indices 28316 -- 28815
GAAGGCGCACAACTATCAGGCGTGGTAACTGACTTGTTGACTTCAACCTTTGCATGTTCGGGAAA
CCCACCTTCAGGACACTGGTTGCTGGGACCGCAATTTCCAATGGGATCTCCGTGTGCATAGTGGG
TCATCTGCCAAGTTGTACCGCTTGCGTTACTTGACTTGGTAAGCAATTCCTGGGGAGAGTGCTAG
GCACTTCGAAACTATGGTTGTGAAGTTAGAGAAACATACGTAAACCCGGCGTGTTGTGTGCCGTT
TATTGACGGTAGTTAACCACGTAGGGAACTAGTACTACATTGTTCACAGCACCAGTGTCACATGT
AGCCGGTGAAGCCGTAAATGGTTCTGGTTTCCGAACTACAACGACGTGTAACAACTTCCACTCCG
TTTACGTATCTCGTTATTTACCTCTGTACTCACTGTATCAACCTTTCCATTCCGTATCTATGATA
ACCCGCTAGCACAACATTGCATCCAACAAACCAACATGCTCAATA
Right flanking sequence: Indices 28879 -- 29378
TTTCTGGGGGTTATGGTGTCCACCACCACCTCAGTCATGGCTATGCGGTGTGATGGTCATGTTCA
CCCTCAGTCATGGCTATGCGGGGTGTGATGGTCATAGGCCCAACAACCAGGTGGGTGGGGATAAA
TATGGCTATGCGGTGTGATGGTCATAGGCCCAACAACCAGGTGGGGATAAATATGTGGTGCGGTC
ATGCTCCTACAGTAGAGTGATCGAGCCATCGGCGAACAGCCGCCATTGATCCAGATGCAGCCTGA
ACCGACACGCCCGTACCCATTTGTGTGTTGCGTTACATGACTCCAGCAGCCGTATCCCGTGTGTC
GCGTTACATGACTCCAGCAGCCGTATCCCGGGGGTATGCGGGGGGCTACATGGATCTCGTGTTAG
TTTGTAGGTAAGTCGCAGGAGTGTGGTGAGGCAGGAGGAAAAGGCAGGGTCTATATGGAAGGCAT
TCGTAGTTAGGTAAGCACTGCTTTCTATGTTAGAGCTTCGTTACG
Found at i:29201 original size:36 final size:36
Alignment explanation
Indices: 29161--29233 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
29151 GTACCCATTT
*
29161 GTGTGTTGCGTTACATGACTCCAGCAGCCGTATCCC
1 GTGTGTCGCGTTACATGACTCCAGCAGCCGTATCCC
29197 GTGTGTCGCGTTACATGACTCCAGCAGCCGTATCCC
1 GTGTGTCGCGTTACATGACTCCAGCAGCCGTATCCC
29233 G
1 G
29234 GGGGTATGCG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.16, C:0.32, G:0.26, T:0.26
Consensus pattern (36 bp):
GTGTGTCGCGTTACATGACTCCAGCAGCCGTATCCC
Left flanking sequence: Indices 28661 -- 29160
GTTCTGGTTTCCGAACTACAACGACGTGTAACAACTTCCACTCCGTTTACGTATCTCGTTATTTA
CCTCTGTACTCACTGTATCAACCTTTCCATTCCGTATCTATGATAACCCGCTAGCACAACATTGC
ATCCAACAAACCAACATGCTCAATAGTGCGTTTCGCCCGACGAGTGGGTGGGTGTGACGTGCGTT
TCGCCCCACGAGTGGGTGGGTGTTTTCTGGGGGTTATGGTGTCCACCACCACCTCAGTCATGGCT
ATGCGGTGTGATGGTCATGTTCACCCTCAGTCATGGCTATGCGGGGTGTGATGGTCATAGGCCCA
ACAACCAGGTGGGTGGGGATAAATATGGCTATGCGGTGTGATGGTCATAGGCCCAACAACCAGGT
GGGGATAAATATGTGGTGCGGTCATGCTCCTACAGTAGAGTGATCGAGCCATCGGCGAACAGCCG
CCATTGATCCAGATGCAGCCTGAACCGACACGCCCGTACCCATTT
Right flanking sequence: Indices 29234 -- 29733
GGGGTATGCGGGGGGCTACATGGATCTCGTGTTAGTTTGTAGGTAAGTCGCAGGAGTGTGGTGAG
GCAGGAGGAAAAGGCAGGGTCTATATGGAAGGCATTCGTAGTTAGGTAAGCACTGCTTTCTATGT
TAGAGCTTCGTTACGTAACAACGCGAAGGTCAGATGTTCTATCTATCAACCACCCCATAATCCGA
TGATTGAATATCGTTCCAAAAGCATGTGACGCACTATGTATCTGTGCCTATGTGGAGTGAAGTGC
CTATGTGGTGCGGCACTTGTACGAAGTGCTCCCTGTTTGCCGGCGATCTGCCGTGTTTGGAAAGT
GCCGCATATGAAGCAGCAGCGACTGGGCGGTGGCCCTACCCCTACTACAGAAAGAACCCCACCCA
AGCCTAGGGGGTGTGGCTCCCGGTTGTTTCCCCTTTCGCTACGGGGCACAAGTAACGGGGTCCGT
TACCGATAGCGAGGAAGGAAGTATTTACCTAGCGAGCGGCGCTCC
Found at i:30270 original size:38 final size:38
Alignment explanation
Indices: 30219--30295 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
30209 ACTCACCATA
30219 CTGAAGGATGAAGGATGAAACTTACCACCGCTGGAGCC
1 CTGAAGGATGAAGGATGAAACTTACCACCGCTGGAGCC
*
30257 CTGAAGGATGAAGGATGAAACTTACCACTGCTGGAGCC
1 CTGAAGGATGAAGGATGAAACTTACCACCGCTGGAGCC
30295 C
1 C
30296 AAGCGATCGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.17
Consensus pattern (38 bp):
CTGAAGGATGAAGGATGAAACTTACCACCGCTGGAGCC
Left flanking sequence: Indices 29719 -- 30218
AGCGAGCGGCGCTCCTCTCCAAGTATCGAGACTTTTATGCGCGCCCCCTAGTCCTTGCGGTTCAA
AGCCCTAGTCCTGAGTGCGGTCCCTCACCTCTTGTCAATGTCTTTTGAGCCTCATGTTGGTACCC
CTACACTGTGCATGCACGGGCAGTTTAACGCCGCGGTACCCCCGAACCCCCTGACGACGATGCGG
TCGGGTAGGGCATTCTACGGTACGGGCCAAAGCAAGACTTCCCCGCTTCATGGTTGAGTGTGTCG
CCAGTTAGGGGAGACAGACAGTTGCCAGATACCTCTACAATACCAGTCTCACTGTCAAGGAAACA
ACCAGGTGCTATACCACGATGGGGAAACCCACTAAGTAACGGGCGAGGGATGAGGGCGAGGAATA
GGTGATGCGGTTCGAGGGGAGGTTCTATCACACGATCACTCTGTCCCTTTATTGTCCCTTTATCC
CCGAACTTGGGTGGGGTTATCCCAGTATCAGCGACACTCACCATA
Right flanking sequence: Indices 30296 -- 30795
AAGCGATCGGTAGTCATGCCCGAGCTGGAGCCCAAGCGATCGGTAGTCATGCCCGATACCTCTTG
TCTTGCTTAAGCTTCGCCGACAAGCCGTGGCTCAAGCACAACCGCAAACCCTTGTTCCCCAGTGG
GTCGTAACCACATCACGACAAATCTGGATGACTTCCGCATGCGTTCAGTGCGAATATGGAAGGTA
CTCCGTAATGATAAAACTAGCCCTGTTCCCTAGTGACCGGGTTCCTGTTGCAATGAGCCATTGTT
CCCAGCCCGGTGAGGTGAGGGGCTTGCGCCGTACTTACCTGCCCTTCCTTGCCTTGACTGTATGC
CCGGCTCGGTACCTTGCCTGTCATCGGTACCTTGCCTTGCCTAAACGGTGCCTCTCTCGGAGGTT
TCTGGAATACGGGGGGTTTAACCGCTTCTGTGGGGGAAAAGGGGAGGGGTACCCCCGAGGGGTGC
TTCACGGCAGCAATTACCATATGACAATATGAACAAAGGAAACCG
Found at i:30328 original size:33 final size:33
Alignment explanation
Indices: 30286--30351 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
30276 ACTTACCACT
30286 GCTGGAGCCCAAGCGATCGGTAGTCATGCCCGA
1 GCTGGAGCCCAAGCGATCGGTAGTCATGCCCGA
30319 GCTGGAGCCCAAGCGATCGGTAGTCATGCCCGA
1 GCTGGAGCCCAAGCGATCGGTAGTCATGCCCGA
30352 TACCTCTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.15
Consensus pattern (33 bp):
GCTGGAGCCCAAGCGATCGGTAGTCATGCCCGA
Left flanking sequence: Indices 29786 -- 30285
CCCTAGTCCTGAGTGCGGTCCCTCACCTCTTGTCAATGTCTTTTGAGCCTCATGTTGGTACCCCT
ACACTGTGCATGCACGGGCAGTTTAACGCCGCGGTACCCCCGAACCCCCTGACGACGATGCGGTC
GGGTAGGGCATTCTACGGTACGGGCCAAAGCAAGACTTCCCCGCTTCATGGTTGAGTGTGTCGCC
AGTTAGGGGAGACAGACAGTTGCCAGATACCTCTACAATACCAGTCTCACTGTCAAGGAAACAAC
CAGGTGCTATACCACGATGGGGAAACCCACTAAGTAACGGGCGAGGGATGAGGGCGAGGAATAGG
TGATGCGGTTCGAGGGGAGGTTCTATCACACGATCACTCTGTCCCTTTATTGTCCCTTTATCCCC
GAACTTGGGTGGGGTTATCCCAGTATCAGCGACACTCACCATACTGAAGGATGAAGGATGAAACT
TACCACCGCTGGAGCCCTGAAGGATGAAGGATGAAACTTACCACT
Right flanking sequence: Indices 30352 -- 30851
TACCTCTTGTCTTGCTTAAGCTTCGCCGACAAGCCGTGGCTCAAGCACAACCGCAAACCCTTGTT
CCCCAGTGGGTCGTAACCACATCACGACAAATCTGGATGACTTCCGCATGCGTTCAGTGCGAATA
TGGAAGGTACTCCGTAATGATAAAACTAGCCCTGTTCCCTAGTGACCGGGTTCCTGTTGCAATGA
GCCATTGTTCCCAGCCCGGTGAGGTGAGGGGCTTGCGCCGTACTTACCTGCCCTTCCTTGCCTTG
ACTGTATGCCCGGCTCGGTACCTTGCCTGTCATCGGTACCTTGCCTTGCCTAAACGGTGCCTCTC
TCGGAGGTTTCTGGAATACGGGGGGTTTAACCGCTTCTGTGGGGGAAAAGGGGAGGGGTACCCCC
GAGGGGTGCTTCACGGCAGCAATTACCATATGACAATATGAACAAAGGAAACCGCAAACGCCAAT
ACGGATGCGAGGAATTGCGTTGGTTTAGTCGTCATGCCCCCACCG
Found at i:34209 original size:21 final size:21
Alignment explanation
Indices: 34185--34224 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
34175 CCGCTAGGGT
34185 CGTTACAGAGTTTATCGGTCC
1 CGTTACAGAGTTTATCGGTCC
34206 CGTTACAGAGTTTATCGGT
1 CGTTACAGAGTTTATCGGT
34225 GCTTGTCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (21 bp):
CGTTACAGAGTTTATCGGTCC
Left flanking sequence: Indices 33685 -- 34184
GGATAAAGAGCTCGATTCGTGCTGAGTGCGGTTAGTTGATGTAGTTGACGTAGACTTCGTATGTT
CTATCAAGGGCGACCATTACGCCTTGCTAGAGAGACTCAAGTTATACACCGACCAATACACCCAC
ACCGACCAATACCCCCGGGAAAGAGGGGAGGGAACAATACACATTCCGCTACACCGTTTACCCCA
GTAGTGGCAAGCGTAACTACATATGGTTTCGTGTTCCCGAGTTACCACCCACCAGTTACCCCAAG
ATCCGTTAATTGACTCTGTATACGTAGGAGATAGACCGGATAGGCTCTCTCCCAACTCGCTATAG
TCCCTGAGTCAGATAGAGGAGAGGGAATCTCTACCTGCAGTGAGGCGTCTACACTGAGACATCGG
TCTATGGGTCTATCGTTACTACGTCTACTAGTCCTAGTCAACGGCACCTTCTGACCGTACCGTAC
CAGTTCGTCAACTTGGGGTAACTAGTCGTTCCCCACCGCTAGGGT
Right flanking sequence: Indices 34225 -- 34724
GCTTGTCCAATAGTGCTCCCCTTCCTACGTCAACTACGCCAACTACGTCTACTAGTGATGCGTCC
AATAGTGCAGTGCTCCCCTTCCTACGTCAACTACGACGCCAACTACGTCTACTAGTGATGCAAGT
TACTGATTGAACATTTCTGTCTGCTAATGGAACCGAACCGTAGCGATAGCGGACGGAACCTCCTG
GTTTTCGCATATGCATCACGGAAACATGCGGGAATCAGGAATGGGTGTTGTTGAATAGGATTGTT
CCGGGGGGAGTAGCTGTTCAGTTTCCTCATTGAAGTTCAGAGGTTCATTTACCCTGTGCGAGGTT
GCTAGTGAGCGTAGAACATATTCCAAAGTACTGTTGTGAGAGGCCGGGAAACCTGGGTGGGGTAC
TGATTGAACGATACTTACCTGGGTGGGGTACTGATTGAACAATACTTATTATATATAGATAGAGA
GTTTGTACAATCGCAGAGCCAACTTTCTGAACTAGACTTGTTCGG
Found at i:34636 original size:31 final size:31
Alignment explanation
Indices: 34600--34662 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
34590 AGGCCGGGAA
*
34600 ACCTGGGTGGGGTACTGATTGAACGATACTT
1 ACCTGGGTGGGGTACTGATTGAACAATACTT
34631 ACCTGGGTGGGGTACTGATTGAACAATACTT
1 ACCTGGGTGGGGTACTGATTGAACAATACTT
34662 A
1 A
34663 TTATATATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (31 bp):
ACCTGGGTGGGGTACTGATTGAACAATACTT
Left flanking sequence: Indices 34100 -- 34599
TACTAGTCCTAGTCAACGGCACCTTCTGACCGTACCGTACCAGTTCGTCAACTTGGGGTAACTAG
TCGTTCCCCACCGCTAGGGTCGTTACAGAGTTTATCGGTCCCGTTACAGAGTTTATCGGTGCTTG
TCCAATAGTGCTCCCCTTCCTACGTCAACTACGCCAACTACGTCTACTAGTGATGCGTCCAATAG
TGCAGTGCTCCCCTTCCTACGTCAACTACGACGCCAACTACGTCTACTAGTGATGCAAGTTACTG
ATTGAACATTTCTGTCTGCTAATGGAACCGAACCGTAGCGATAGCGGACGGAACCTCCTGGTTTT
CGCATATGCATCACGGAAACATGCGGGAATCAGGAATGGGTGTTGTTGAATAGGATTGTTCCGGG
GGGAGTAGCTGTTCAGTTTCCTCATTGAAGTTCAGAGGTTCATTTACCCTGTGCGAGGTTGCTAG
TGAGCGTAGAACATATTCCAAAGTACTGTTGTGAGAGGCCGGGAA
Right flanking sequence: Indices 34663 -- 35162
TTATATATAGATAGAGAGTTTGTACAATCGCAGAGCCAACTTTCTGAACTAGACTTGTTCGGTTG
AGTAAGGTAGGGGGCGGTCAGTCGAAACCAATCACGCTTAGCAATCTGATTTCTGTTTCTATCAT
ATTAACACCTTATCAAGCCAAGCGCGGGTGGAGGGAGCTCTGATACATCAGGTAACGCCAACGCC
CAGCCTAGCGGCCCCACCTTATATAAATAACGCGAGGGTGGGTGGTCGCGGTAAGGCGCCACAGG
AATAATGAACTGAGGGTATACAGGTCGTTATGATACAACAAGTCACTTTCCGGTTCGTTGTACCA
TATAGAAGTTCCAGCGTTGACACCCTTATTCTTGTGTATATTCTGAAAACCATATAGAACCGGTC
GACACCCCGGCTATACGGTTTCTAGATCAATCAACGTATTGTCCATATGAGCGTATCAACGAATG
ATGTCAACAACGCGCGTACGCAGAGAGAGCCATATACGGGTGACG
Found at i:35393 original size:14 final size:14
Alignment explanation
Indices: 35367--35408 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
35357 TAAACAAAAC
*
35367 CCCCGCTCACGTCT
1 CCCCGCCCACGTCT
*
35381 CCCTGCCCACGTCT
1 CCCCGCCCACGTCT
35395 CCCCGCCCACGTCT
1 CCCCGCCCACGTCT
35409 ATGTGTGCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.07, C:0.60, G:0.14, T:0.19
Consensus pattern (14 bp):
CCCCGCCCACGTCT
Left flanking sequence: Indices 34867 -- 35366
GGCCCCACCTTATATAAATAACGCGAGGGTGGGTGGTCGCGGTAAGGCGCCACAGGAATAATGAA
CTGAGGGTATACAGGTCGTTATGATACAACAAGTCACTTTCCGGTTCGTTGTACCATATAGAAGT
TCCAGCGTTGACACCCTTATTCTTGTGTATATTCTGAAAACCATATAGAACCGGTCGACACCCCG
GCTATACGGTTTCTAGATCAATCAACGTATTGTCCATATGAGCGTATCAACGAATGATGTCAACA
ACGCGCGTACGCAGAGAGAGCCATATACGGGTGACGCGTACGCAGATATGTTCATATACGCGAGC
CATGCTTTAGACGGAGCTGATATGAGCCCCCGGTAACAGACCACTACCTGCTTTTCAGTTGTGTT
TCCCGGTGCAATAGGGACACACACAAGTTTCCCATATATACGCAGCAGAAGGTCCCCAATCCTTC
CATACTCAAGTCACCGGGCATACAGATAGACCATATAAACAAAAC
Right flanking sequence: Indices 35409 -- 35908
ATGTGTGCATTTTCGATACAATGTGTTTTTCCGGGGCACATAGACACAAACACATGGTCAACTCG
TACGCGTCTGGCTTTAGCTACATGTTGTTTGTCGTTGAGCTGGGTGTAGGATGTGTTGGTCATAA
ACAACCGCCACCACAAAGCAGCAACCAACTATCGCGGTTATATGGGGGGTGTAACCGGTTAACGC
GAGTGTGACTACCGGTGCGGGTGTTGTCCTCCGGGTGTTAGCCTTGGGTGTTGGCGGGAGTTACC
CTGTAGGTGGTGCGGGGGTGTTGGGGAGAGGCCGTAGGTTGTAACGGGTGATTAAGAGTATAGCT
GTAGAGGTATAGGAGGAGCGGTGTGTCAAGGCGTGGTCGTAGACTGGGTGAGCGTATGGGTGACT
TGTAGAAGGGTATGGATCTGTGTGTCGAGGGGTTACGGTTGTGGCAAGGTGTGCGGGGTAGCGTA
GGGGAAAGGGAAAGGTGGGATGTGTGTGCGGAGGGTGGGTGTGGA
Found at i:36968 original size:6 final size:6
Alignment explanation
Indices: 36957--36995 Score: 60
Period size: 6 Copynumber: 6.2 Consensus size: 6
36947 TCACCAACAC
36957 TCTATA TCTATA TCTATA TTTCTATA TCTATA TCTATA T
1 TCTATA TCTATA TCTATA --TCTATA TCTATA TCTATA T
36996 TGCCTGCCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 25 0.81
8 6 0.19
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (6 bp):
TCTATA
Left flanking sequence: Indices 36457 -- 36956
GTGCCCCTTTCGCTCTCACAACTCTCGATGTGGCCTGGGTCGGCGCGTGAGGACTCCTCATAATG
CCATTCCGTTTCGCTGATTCCAAGGCGGCAGTTGGCGTCGTAACACGGGCTGCTGAAGTCGGAAA
GTCGATCTCAGTTGATGATATTGCCAGCATATACAAGGCATGCTCACCCTCTCTATATGCGACAA
CACAGCATATACAAGCTTCGGTAAAGTCGGTGTGCGAATGCCCAGAGATGCTTGTCGGTTCGTAA
CAAAGGAAGTCTCACGTTCGGGGTTATGTTACTACCTTGTTTTTCAGCTACATGTTCGGTAGTTG
AATACCCTTTCCGCGCCCCCCTGTAGACGCCGCCCCCTGTAGCCAGCGGTCTTTTGTCTCTCTCC
AAGTCCACCACCGCCCACCGTACGACGACCCAGTTGTTACGTCTGTTCGAAGGGGTCCCGAGGTT
CCGCACCAACACAACATGACACTAATCACGTGCCGTCACCAACAC
Right flanking sequence: Indices 36996 -- 37495
TGCCTGCCTATTGCCTATATGCCAGTTGCCAATGTGCCGTTTGGGCGTTACAGTGATATCCAGCC
TCTCGTGAGTAGTGGGCGTAAGCGTGATTACGAACTTGAGTACGGAAAGAAACTACAGGAAGTTC
AGTACGGAACTGCGTAGGAAGGAAGTTCAGTACGTAAGTTCAGTCAGAAGAGCCGCCCTGAGTAC
GTAAGGGAATGATACTAGTTATTGGACTATTCCATAAACAGATTCTACCATATAAACATTCTACA
CTAATCAGTTTTTTCCCATTTCTCTCGTATATCGTAGTAACGCCCTTAATCATGGGGTTTGAAAA
AGACTTAAGTTGTCATTTCCATTTAGGTCTGATTCGGATTCCTCTGCTGTTTCCGAGTCTTCCCG
AACCGATATTTCGCAGTGATAAAGAAGATGGTACACCCGAATTGTATTCTTCAAGTGCTTATTGC
TTGCCAGAAATCCTGCTTCTGCGATTGTACGGGGTTTTAGTTCTT
Found at i:36982 original size:14 final size:14
Alignment explanation
Indices: 36963--36989 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36953 ACACTCTATA
36963 TCTATATCTATATT
1 TCTATATCTATATT
36977 TCTATATCTATAT
1 TCTATATCTATAT
36990 CTATATTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.56
Consensus pattern (14 bp):
TCTATATCTATATT
Left flanking sequence: Indices 36463 -- 36962
CTTTCGCTCTCACAACTCTCGATGTGGCCTGGGTCGGCGCGTGAGGACTCCTCATAATGCCATTC
CGTTTCGCTGATTCCAAGGCGGCAGTTGGCGTCGTAACACGGGCTGCTGAAGTCGGAAAGTCGAT
CTCAGTTGATGATATTGCCAGCATATACAAGGCATGCTCACCCTCTCTATATGCGACAACACAGC
ATATACAAGCTTCGGTAAAGTCGGTGTGCGAATGCCCAGAGATGCTTGTCGGTTCGTAACAAAGG
AAGTCTCACGTTCGGGGTTATGTTACTACCTTGTTTTTCAGCTACATGTTCGGTAGTTGAATACC
CTTTCCGCGCCCCCCTGTAGACGCCGCCCCCTGTAGCCAGCGGTCTTTTGTCTCTCTCCAAGTCC
ACCACCGCCCACCGTACGACGACCCAGTTGTTACGTCTGTTCGAAGGGGTCCCGAGGTTCCGCAC
CAACACAACATGACACTAATCACGTGCCGTCACCAACACTCTATA
Right flanking sequence: Indices 36990 -- 37489
CTATATTGCCTGCCTATTGCCTATATGCCAGTTGCCAATGTGCCGTTTGGGCGTTACAGTGATAT
CCAGCCTCTCGTGAGTAGTGGGCGTAAGCGTGATTACGAACTTGAGTACGGAAAGAAACTACAGG
AAGTTCAGTACGGAACTGCGTAGGAAGGAAGTTCAGTACGTAAGTTCAGTCAGAAGAGCCGCCCT
GAGTACGTAAGGGAATGATACTAGTTATTGGACTATTCCATAAACAGATTCTACCATATAAACAT
TCTACACTAATCAGTTTTTTCCCATTTCTCTCGTATATCGTAGTAACGCCCTTAATCATGGGGTT
TGAAAAAGACTTAAGTTGTCATTTCCATTTAGGTCTGATTCGGATTCCTCTGCTGTTTCCGAGTC
TTCCCGAACCGATATTTCGCAGTGATAAAGAAGATGGTACACCCGAATTGTATTCTTCAAGTGCT
TATTGCTTGCCAGAAATCCTGCTTCTGCGATTGTACGGGGTTTTA
Found at i:36982 original size:20 final size:20
Alignment explanation
Indices: 36957--36996 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36947 TCACCAACAC
36957 TCTATATCTATATCTATATT
1 TCTATATCTATATCTATATT
36977 TCTATATCTATATCTATATT
1 TCTATATCTATATCTATATT
36997 GCCTGCCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (20 bp):
TCTATATCTATATCTATATT
Left flanking sequence: Indices 36457 -- 36956
GTGCCCCTTTCGCTCTCACAACTCTCGATGTGGCCTGGGTCGGCGCGTGAGGACTCCTCATAATG
CCATTCCGTTTCGCTGATTCCAAGGCGGCAGTTGGCGTCGTAACACGGGCTGCTGAAGTCGGAAA
GTCGATCTCAGTTGATGATATTGCCAGCATATACAAGGCATGCTCACCCTCTCTATATGCGACAA
CACAGCATATACAAGCTTCGGTAAAGTCGGTGTGCGAATGCCCAGAGATGCTTGTCGGTTCGTAA
CAAAGGAAGTCTCACGTTCGGGGTTATGTTACTACCTTGTTTTTCAGCTACATGTTCGGTAGTTG
AATACCCTTTCCGCGCCCCCCTGTAGACGCCGCCCCCTGTAGCCAGCGGTCTTTTGTCTCTCTCC
AAGTCCACCACCGCCCACCGTACGACGACCCAGTTGTTACGTCTGTTCGAAGGGGTCCCGAGGTT
CCGCACCAACACAACATGACACTAATCACGTGCCGTCACCAACAC
Right flanking sequence: Indices 36997 -- 37496
GCCTGCCTATTGCCTATATGCCAGTTGCCAATGTGCCGTTTGGGCGTTACAGTGATATCCAGCCT
CTCGTGAGTAGTGGGCGTAAGCGTGATTACGAACTTGAGTACGGAAAGAAACTACAGGAAGTTCA
GTACGGAACTGCGTAGGAAGGAAGTTCAGTACGTAAGTTCAGTCAGAAGAGCCGCCCTGAGTACG
TAAGGGAATGATACTAGTTATTGGACTATTCCATAAACAGATTCTACCATATAAACATTCTACAC
TAATCAGTTTTTTCCCATTTCTCTCGTATATCGTAGTAACGCCCTTAATCATGGGGTTTGAAAAA
GACTTAAGTTGTCATTTCCATTTAGGTCTGATTCGGATTCCTCTGCTGTTTCCGAGTCTTCCCGA
ACCGATATTTCGCAGTGATAAAGAAGATGGTACACCCGAATTGTATTCTTCAAGTGCTTATTGCT
TGCCAGAAATCCTGCTTCTGCGATTGTACGGGGTTTTAGTTCTTA
Found at i:39356 original size:59 final size:60
Alignment explanation
Indices: 39242--39361 Score: 224
Period size: 59 Copynumber: 2.0 Consensus size: 60
39232 TGTACGGGAG
39242 GTCCGCTACGGTGGCAGGGAAAGATTGGGGCTACCCTGAGAGATGGGGGTTGGCTTCTTGT
1 GTCCGCTACGGTGGCAGGGAAAGATT-GGGCTACCCTGAGAGATGGGGGTTGGCTTCTTGT
39303 GTCCGCTACGGTGGCAGGGAAAGATT-GGCTACCCTGAGAGATGGGGGTTGGCTTCTTGT
1 GTCCGCTACGGTGGCAGGGAAAGATTGGGCTACCCTGAGAGATGGGGGTTGGCTTCTTGT
39362 TGTCAAGGGT
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
59 33 0.56
61 26 0.44
ACGTcount: A:0.17, C:0.18, G:0.40, T:0.25
Consensus pattern (60 bp):
GTCCGCTACGGTGGCAGGGAAAGATTGGGCTACCCTGAGAGATGGGGGTTGGCTTCTTGT
Left flanking sequence: Indices 38742 -- 39241
GGGTATGCACACACATATATAGGTGGTGCCGCTGCCCCGTACTACACGTGGGGGAGGAGGGGTAT
GCGTACCTACATACATAGCAGGGTGCCAGATCACGTAACCAGATTCCGGGTCAACTCAACTGTTG
AACCGCCCCTACATACGCCCCCCGCATACCCCCCTGTAGCCGGCTGTAGCCTCCGCCGGCCCTCT
TCCACAACTATGGGGGTCGGGGTACCCCCGAGGGTTTACTTACCTACCGTGCTTTGTGATCTATC
TTTATGTAGTGCGTTTTCTGCCAGGTCAACTGTTGTCTACCCCACGGTATGGGCGGAAGAGAATG
AATCAACCCGAAGGGAGCCGTAACGGTGGATTCTTTCACCACCTCGTTAACTAGGCCGGAGGGAA
GGGATGAAAGGGAAGGTCTGCGTAACAAGGTGGGGTTTTTACGATAAGTCTGCGTATTACTCGTG
AGGGTCGACTACCATAAAGGAGTCATCGCAGGCCTTGTACGGGAG
Right flanking sequence: Indices 39362 -- 39861
TGTCAAGGGTTGGAGCGATGCAACCGCATCAACTACCCCCCCGAACCCCCAGTACCCCCCCTGTA
GCCAGGGTCGTGTCTAGTTGAGCGATGTTAACGTGTGGTCTTCTATATTATATAGATAGAGATAG
GCGTATAGGAGGTTGTGTGACACAACTAAGCCGGCGTTATGGGAAAGAGGGACGTTCGAGTTAAT
ATACGAGCCGTTTATTAGTCCGGTCGTGAAACGGCAAGTGCTGCGCAGAGGAACTTGTCTGTCCG
CGGCACCAGCCTTCTGTTCTGTTCGTCACCACGAACCCTCCCAACGAAGAAATCAATCAACCAGG
CGAGCAGCGCCGTTGTACGGGGGTACCCCTTCGGGGTTGTACGGGGGGGTAACCGCGCGGTGTTC
CGGTGTTCGTTCGGTTATGCTCGCCCGCATCATCACGAATAGAACTAGATACCGTAATGGGTCTA
CAAGGCCCGCAGTTATGTGGGTTGGGCCAAACCACCATAGCTCTT
Found at i:42518 original size:38 final size:38
Alignment explanation
Indices: 42476--42551 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
42466 ATTTCGTAAG
*
42476 GTAAAGCAGGGCTGACTCCGGCCCGCTTTATGTACTGT
1 GTAAAGCAGAGCTGACTCCGGCCCGCTTTATGTACTGT
42514 GTAAAGCAGAGCTGACTCCGGCCCGCTTTATGTACTGT
1 GTAAAGCAGAGCTGACTCCGGCCCGCTTTATGTACTGT
42552 ATTGGAGCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (38 bp):
GTAAAGCAGAGCTGACTCCGGCCCGCTTTATGTACTGT
Left flanking sequence: Indices 41976 -- 42475
TAGTGCCTCCTCAGACCGGTGTGCGGGACTTGGGCCCAACCAACCAGAAACCAATTCGTAATCTC
ATACGCGTAGCCCGGGTTCGAGGAACCGCAAGGCAACCAGATGCGCAATGCCAGTACGGTAGGCA
TAGGGAGCAGGCCAGAGGAAGCATGACCTACACCCGGGCATAGCGGCGGCACCCTATAAGCCGGG
GGAAGCGCGCAAGCCAGCTGACGTACTGAGACCTCCAACGAGCCAGGAGTCACCCAGACATAGTT
GACTAGGCGTGATATACGTGACGGACAAGCACCGGTGGGATGCAGCATCACGCAAACACTCACAT
AGCGGCCAGACCGGTACGATCTCGTATATGACGTACAGTTTCAAATGGTGTTGTGCCCTATGAGG
AAACCGGTCAACCCAGGACCACCCGGCTAAACCGGTCAACTCCCGACACAGATCAACATAGTTAC
GCATCTTCATTCATTGCTGAACAACATAGTTACGCATTTCGTAAG
Right flanking sequence: Indices 42552 -- 43051
ATTGGAGCGCAAAGGCTCGGCACCACGCACCACATGAAAATCCTTTAGTTCGCTGACTGACGACG
GAGCTTAGGCCACCCACCTCGGCATCTCGATGTTTGAGCGACAGAAGAGTCAGCCAGATTGGCAT
CGGTGTATTAAGCAATACAATATCAAACCCTAACCACCGACATCGCCTGAAGCACGCTGTGCGTC
GCGGTGTGACCACTCCATATAAGGGGATGACCACAACCCAAAACGCTTTCTTGAATCTCATGACG
CCTGTATACTAGTAGCACATGCTGACCAATCCATATACTATACAGGCGTTTATGAAATGGTTTAT
ATATGGTTGGTGCGCCTGCCATTGACTTACTGTAAGCTATGGCCCAGATACTTGTTCCGCTCTGC
TATATGGTGCGGCTTGACCGCGCTCTTCCTTCCTGATTCTTGAGTGTCTGCCTGAGCCTTGCGCG
CTTATCTGGCGTATCTAGCCTGCTCTTCCTCTCGGATGTATCTCT
Found at i:46330 original size:33 final size:33
Alignment explanation
Indices: 46283--46348 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
46273 GAAGTAGCCT
*
46283 TCATTGTAGTTGTGAGCAACAAAATCCATGAAG
1 TCATCGTAGTTGTGAGCAACAAAATCCATGAAG
*
46316 TCATCGTAGTTGTGAGCAACAAGATCCATGAAG
1 TCATCGTAGTTGTGAGCAACAAAATCCATGAAG
46349 GGGACAAGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (33 bp):
TCATCGTAGTTGTGAGCAACAAAATCCATGAAG
Left flanking sequence: Indices 45783 -- 46282
ACATACTAGGGTTATGCGGATGCGGTTGGGAACGCGCACGTTGGAGGCTGCCAGGCTGCCTTCTC
CCGTGTCGGTCGGAGGGAGCGGAACAAGGGCCGCCGCCCACCCCACCGTTATACGCCTAGCGGTT
ATGCAGCACTGCCGGTCTGCCGCCCTATCAACCCTTGATGCAATAACACAATTCTACTGCGATGG
TCCCTCGAATTCGGTTCGTAATAACCAGAATGGCCAACCCAATAGCAGATTCCGCAGCTGCCACC
GTTAACACAAATAAAGCTTTTAATTGACCCACTGTGTCATCCATATACACGGATTTGACCAAAAG
GTTAATTAATACAGCTAGTAACATTAGTTCAATTGACATTAACATCTTTATGATATTTCGTCTAT
TTAGAAAGACTCCCCAAATACCATATATAAAAATTGTTGAAATCGCGATCGGGAGAGAGGAGGTG
GTGTTGTTGAGCTCAAGAAAGAGAGCGTTCTCTCCGAAGTAGCCT
Right flanking sequence: Indices 46349 -- 46848
GGGACAAGATGTGGAACGGAGGGAAAATTCCGGAGGGGACAGCAAGCGAGTTTGGGCGGGAAAAC
TCTGACTCAACATTGAAATGACCCAACTGAACCAACAACTACTCCCCCCGAACCCGCCGCTACAT
AAGCGTGTAGTACATCGTCAAATAATCGTCAACCCCATGCTGTCGATACAACCTCTCCCCATGGA
ACTTGGGGCTCTATGTGACCTTCATGCGACCTCGATGTGTGAATCTGACTAGTTCACGTATGCTC
GCGAATATCACGAGAATATGATTTCAACTCATAACGACCTGATACATAGACATATATAGAATATC
ATAGAATAACCTGGCCTTCACTTGCCAAAAGACACCTCGGGGCAGCCGCCCAAAGGGGGGTCCCC
CTTCACGGGACCTACACAACCCACCAACCCGTGGGGGCAACCATACGGTAGCGGTTGTTGTTGCG
GTTCCATTCATTAAGATGGGACCTGGTATACGGTTGTGACCTTGA
Found at i:47820 original size:15 final size:15
Alignment explanation
Indices: 47800--47829 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
47790 ATTGAAGTTA
47800 CGTGTGGTGTGAGGG
1 CGTGTGGTGTGAGGG
47815 CGTGTGGTGTGAGGG
1 CGTGTGGTGTGAGGG
47830 AGCTTGCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.60, T:0.27
Consensus pattern (15 bp):
CGTGTGGTGTGAGGG
Left flanking sequence: Indices 47300 -- 47799
AAACAGAATTCTCTTCAATAGATATTAGATCACCGCGGGACACTTGATAACGAGTGATGTTGACC
AAGTAATTGTTCGCACGAATCTTTCGGTGACTTATCGGCTGTCTCGCTTGAGGAATAGTTTCACA
GAAATGTATCCGAACCGGGATTACGTCCGATCTTGTTTCTAGATTGAGTGGAAAGGGTATATGTG
AAGCTCGTTCTGGCCCTCCGTCGTGCATACGACATATGATGGGGGCATTTCCATAAGAAAGGGAC
AACTTTCGTATGGCTTGTAATGGTTTGTAACTGTTCCAATTCTGTCTCTGATCAATATGGTTCCG
TCCATATCTTCGAATGCTTTTCCATCTTCGTAGAATGCGGCGTTGTATTCTTGTCAGTGGTTTGT
TCCATATGAGCTCGTTAAGTAGACGATAAGTTTTCACTACAAATGCGGTCCCCCCATCGTGTAGG
CGCTCGCTGGATCGGTCTTTCTTACTTTCTCTTTTATTGAAGTTA
Right flanking sequence: Indices 47830 -- 48329
AGCTTGCTCACATAAAAGACGCTACTACCCTACTACTCGATGGCGTTGTTAACTGGCGTCCAACA
CCTTCCCAGAAACCGGCAATAGCACCTTCCCCGGGCCTTCATATGCCGGGAAACGCGCCGGTCCC
GAACACCGGAGGGTTGAGAAAGCCCACAAGGGGGGTATGCGGGGGGCTACATGGGCGGAGTTCGC
GCGTACGGTGGCGGTAAGAGGTTTACCTATGACAGCCGTATATACAGCGGCAGTACTTCGATTTC
GAGAGCAGAGCCCCAACCATATATGGACGGGGGGTGAGCGGAGCGAGCGCCAGCTCTTCTTACTT
CCCCCACACCCGCGGGGTTGGTAGGGGGGTTGCGGTAGTTGCCGGTGTAGTGCGGTTCGTACGGC
TTGCTGAGCTTCGATCGACGGGGACGACAGTGTATGAGCTTCCATACGTAGGAGTCGTTCTAGTC
GGGCGGCGGCGGTCATTACGGGAATACATACACAAAGCCAGTGTT
Found at i:51299 original size:37 final size:37
Alignment explanation
Indices: 51258--51332 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
51248 GAGCGGAACG
51258 AACACAACAACTCCCGCACCCGCACCGTTGATTAGAT
1 AACACAACAACTCCCGCACCCGCACCGTTGATTAGAT
51295 AACACAACAACTCCCGCACCCGCACCGTTGATTAGAT
1 AACACAACAACTCCCGCACCCGCACCGTTGATTAGAT
51332 A
1 A
51333 GTATATACGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.37, G:0.13, T:0.16
Consensus pattern (37 bp):
AACACAACAACTCCCGCACCCGCACCGTTGATTAGAT
Left flanking sequence: Indices 50758 -- 51257
ACCCCACCGTGCGTCAAACTAACCTAACCTCGTTACACGCAGCAGAACTTCGCGCAAGAGCTAAG
TCACAGTACGGGTTACCAGTACGGTAACAGTACCGTTTGTAACTGACAGGTAACGGAGGGAATGA
GAGACCCACCACACGGTGCAGAAAACATGTCGAGGGAGGACCCCCCGCCCCGCGCACATACGGGC
CGAGCAGATTGAGGAACATGCTCATGTTCCTGCTACCGAACCAACAACGCCCCCCTGGTTCCCGG
CAAGCGCGTCGATAAATCGCGAAGCCCAATTCCCAGGTAGTTGAAAAAACGTATCCGGTGGTGTA
ACGCCGGCGATAACTTACGCTTGCGAAGCCAACCTCAGCTCAATATTGAGGTACTATCGACTTGC
TCGTTAACCGGCACGAGTGAGAGATATAGGCTCGAAGCGGGAGATTCAGAGATACAAAGAGGAGA
GGCCTGGTTCCTCTACCTTATGGTTTCACCCAGTGGAGCGGAACG
Right flanking sequence: Indices 51333 -- 51832
GTATATACGGGTAGGGTAGGGTACCCCCCGGGATACGGTCGAGTGTTCCTTCGTTATGAAGTCGC
TGCTAGTGAGCAACTGCCATCTTGACGCCCAACCAACAACGGCAACTACCAACTACTTAGGGGAT
GGTGGGTTCTAGTTGTGTTGCCCCTTTGTAGTTCAGCCCCGAGTACATCTATGCGCGGGTGCCCC
TTCCGTACAAGTTGCCCCCCGTACAAGGCCTCGTGACACAATCGCCATCGCCCACAACGGAAAGC
GAACGGCCTTCTCAATGGTGGAAGAGCAGTCTGCCGCCGGACTGTCAAAACAACCCTAGGCTCCG
AAACCTGAACGAAGCGCCGCAGTACGGAACAAATGGGTTCCCCAGTCCTAAGAGTGAACTTGTTG
TGGTGTGCCGGCCCCAACTGTGTAGTAGCCTCGCTAGAACGTTTTCGGTAGAGTACCGGAGCTTA
CGTACCTTCATGTTTGTTCTGTTTAGAATTCAAGAAGCAAGGGTC
Found at i:52874 original size:44 final size:44
Alignment explanation
Indices: 52811--52894 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
52801 AGTGACCACC
52811 CGTAGCAACTGTTCCATACGTCAACATAGACCTTCGTGGGCGGG
1 CGTAGCAACTGTTCCATACGTCAACATAGACCTTCGTGGGCGGG
52855 CGTAGCAACTGTTCCATACGTCAACATAGACCTTCGTGGG
1 CGTAGCAACTGTTCCATACGTCAACATAGACCTTCGTGGG
52895 TGGTAATGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (44 bp):
CGTAGCAACTGTTCCATACGTCAACATAGACCTTCGTGGGCGGG
Left flanking sequence: Indices 52311 -- 52810
GAGATTACGAGACTTGTTCTGTATGAGACTTACGGTGATGAGGAGTGTGAGTGCCATAATTCTGG
TAAGAAGCAGCATGTTGCGAGTGGCTCACGCTTCCGCCTGGTCCTATTGGAAGCCTATCCACCGG
GGTGTTGGCTGATCCGTAGGGGTATCCGCTTGAAACGCGCCACGTACTGATCACGTACATATATC
AAAGTGTTGGTCTTGCGATTCCGTGAAGGCGGCGTAAGTACTATCGTACTATCGTACTGTGGCCG
CGAGCAGCTGATGTTGGCCTTGTCCTCAGATGGTGGGATCGATGCTTCAGCCACGCGGCTGGGCC
TGCCCCGTACAAGGTGTCAAGCAGTACGGCTTTATACGGTGGGTCTGTGTGGGAACTGGTTAGAA
TTGCGGCTATCTATGAGTAAGGCAACCAGTAGAATGGACCGGTTAGTGTCAATAACATACGATAG
TTCTGTTACATAGTATCAGGATGCGCTGTGAAGACAGTGACCACC
Right flanking sequence: Indices 52895 -- 53394
TGGTAATGGTGCTACGAAAAACCGGCACATGGAGAATGCATCTTAAGTACTGTGGGTTGTCTGGT
AGCATCAGGATAGAGGACCGGCAAGTGACAACTAGTCACCCTTTGCGCTTGGTTGACTGCTGTAT
AGAAGGGTTGCTTTATCAGTATGTAACTGTTCAATCTGTGCCGTATCTTTCCTACAGAATTCCGG
CTGGACGAGTACAACACGTCGAATGGTGACTCTGAAGGGGGGCGGATTTCCCCGGCACGCACCCG
AACCCATTCTTCCTCTTGTGGGTAGTTGTTTCCACTTCAAGCAACCGGTACTACGACGTACCGCT
CGGTCGCAACTACGCACATCCTTCACAACACAATCCTTTACGTCGCAACTACGCACATCTATATT
GACAAACATGAACATCAGAATATTGAATTGACTTTGTACGTACCGTACCGTACCGTATATAGTTG
CTGGCCGCCGGCCGCGCCGCGCCGCCGTATCAGAATCATGAGTTG
Found at i:60990 original size:17 final size:17
Alignment explanation
Indices: 60968--61003 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
60958 CGATGCACCC
60968 CACCAACCTGATCCGCA
1 CACCAACCTGATCCGCA
60985 CACCAACCTGATCCGCA
1 CACCAACCTGATCCGCA
61002 CA
1 CA
61004 ACGCCCCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.47, G:0.11, T:0.11
Consensus pattern (17 bp):
CACCAACCTGATCCGCA
Left flanking sequence: Indices 60468 -- 60967
TCGCGTTGAATCAGTGGGCGGGCGGATCCGGATCGTCACCGTTATTCGTTATAAAGGTAGCTATT
GACGTAACTCTATTGAAAAAGAGAACTGCATTGCTGTTGGTTTTACACGGCAGTGGGTTAGCCCT
TCCTGTTGCTAGTATACGCCCCCCTCCCGCCGTCTTGAGAGCCAGTGGGACCGTACGCGACCTTA
GGAGCTAGTAGCCGCCCCATTCCAATAGTTGGAGCTAGTAGCCGTTGTGCCAAGGCCCTCATAGC
CACCACTATATGAACGGAACTTACGGTTGATTGATTGCTTGTCCACCTGCTGCTCACTTGTCGTC
CACCCCGCACGTGAACAGCACCGCATTAACTACCTACATGCGGGTAACCTACACGGCAACTACCT
GGGGTGTGGGGGGAGAATACGTACGCCCCTTTCCCCATAACGCAGGAAGTGCCCCTGGTGGGCCC
AATACGGTAGAAGTGTCGCCCCCTGTAGCCGGCATCGATGCACCC
Right flanking sequence: Indices 61004 -- 61503
ACGCCCCTGCGTCGTATAGACGGGTAGTGGGGTCGCCCCCCGAATACCGTTATCAAGATGGACGC
CCATATCCCACAATCTGCGCATTTATGTAGTGCAGGGCGAAGCCGTTAAGTTGATCGTACAGTAC
GGTAAGGTTCCTGCTCCGTGTAGATCAACGGTCGCCCACCACACCGTTATCAAGATGAACGAGCG
GCTTACTCATATAACGCGGAAACCGGCAGGAAGGAGTGCTTTCACTCAAGCGGTGCTCCCTATCA
CGAATACCGCTGATGACAAGTAGCGGCGTATCGGTGATGTTGTTACAGAAGCAAGCTGGGGAACG
AGGAAGGTGTTGTTGAAGCACGATAGCGCGGCTTGAGTAGGGCAAGCAACAGACACGAATTCAAC
CAGACACAACATATATCGAAACCGGGCATAAGCGTATAGAAGTTCCGTTCGGGCAACAACCTTAC
TTGTTCTACTCTCGTTACGGTGCTGCTATGCTCGCTCTGGGTCAG
Found at i:61653 original size:34 final size:34
Alignment explanation
Indices: 61610--61678 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
61600 GGTACGGTTA
61610 TATAGCACCCCTCTACTGTAGTTACTGCTAACGC
1 TATAGCACCCCTCTACTGTAGTTACTGCTAACGC
61644 TATAGCACCCCTCTACTGTAGTTACTGCTAACGC
1 TATAGCACCCCTCTACTGTAGTTACTGCTAACGC
61678 T
1 T
61679 TCTGTATTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.30
Consensus pattern (34 bp):
TATAGCACCCCTCTACTGTAGTTACTGCTAACGC
Left flanking sequence: Indices 61110 -- 61609
GCCGTTAAGTTGATCGTACAGTACGGTAAGGTTCCTGCTCCGTGTAGATCAACGGTCGCCCACCA
CACCGTTATCAAGATGAACGAGCGGCTTACTCATATAACGCGGAAACCGGCAGGAAGGAGTGCTT
TCACTCAAGCGGTGCTCCCTATCACGAATACCGCTGATGACAAGTAGCGGCGTATCGGTGATGTT
GTTACAGAAGCAAGCTGGGGAACGAGGAAGGTGTTGTTGAAGCACGATAGCGCGGCTTGAGTAGG
GCAAGCAACAGACACGAATTCAACCAGACACAACATATATCGAAACCGGGCATAAGCGTATAGAA
GTTCCGTTCGGGCAACAACCTTACTTGTTCTACTCTCGTTACGGTGCTGCTATGCTCGCTCTGGG
TCAGGTTATGCGGGTCAGACTAGCTCCCGCTCTACCCCCGGCCCGTATTCGGGGGGTACCCCACC
CCTGTAGGAAGGTACGCCACCGCAACCCGGGTTGCGGTACGGTTA
Right flanking sequence: Indices 61679 -- 62178
TCTGTATTCGCATCTCTAGTTGGTAAACTAGGTGGGCGCTCTACCCCTGTGTCTGCTGCTGGAGG
AACTGGATCTCGATCTCGACACTCCATAACTGGAGGAGGTGGAGGATATGCAGCAGAATCGCCGC
GTACATAGTTGTTGTCAGGGTCTGGGTCTCGATCAGGAGCTGCTGCCATGCCTCACTACCGCAAC
TACTATACACTGTGCTTATGGGTCTCGATCTAGATCTTCTGGGTCGTCTAGAAATCACTTGCTTC
TGATATGGCAACATCGCAACAAGTATACATAGGCTGGGCGAACTACTGCTGCTGAACGGCCATAT
GCCCACCTGGCTGGTTCGGATGTTGGACCTGGAACAAGGTAGCAACACGAGGCTACGGACTTACT
GCCTTCAGGCTGGCTTGGTTTATCCTACAAAGTACTGTGCTGTTACGATAGCCCAGTAAGCCGAC
GGGCCTGCCATAATGACCTATCGTTACCGGGAGATCTTGATAAAG
Found at i:67191 original size:5 final size:5
Alignment explanation
Indices: 67176--67229 Score: 54
Period size: 5 Copynumber: 10.8 Consensus size: 5
67166 GTGTATGTGT
* * * * * *
67176 GTGGG GTGGC GCGGC GTGGC GTGGC GTGGC GTGGG GTGGT GTGGT GTGGT
1 GTGGC GTGGC GTGGC GTGGC GTGGC GTGGC GTGGC GTGGC GTGGC GTGGC
67226 GTGG
1 GTGG
67230 TGGGGCATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.00, C:0.11, G:0.65, T:0.24
Consensus pattern (5 bp):
GTGGC
Left flanking sequence: Indices 66676 -- 67175
GGTATCGGTAGAATCCATATTGAGGGTGGTCCCGTTACAGTGACCCGGGTGGCACATCTCTCACA
CTCCCGAAGATCCCAGCCATCACAGAGGGACTCCTTTCGGCGTGTCAATATGCTGCAAGTTACCA
TGCAAGCTTCCCACCCAGTAACGTGTTGACATTACGAAGGGAAGGGGTTACGGTTAGTTGGTCTC
ACCGTCGCACGACTAAGTAACCAGGGTTGCCGATCAGTAATGCTTTACAAACATGCGATATGGCA
ATACGGATTACCGACTTACGTGGGCGGGTCGGTGCTTCACCCGAATACAGGTACGTAGGTGAGCC
GCAATCATCAGCTCACCCTGAGACCTGATTCGTGGCCCACCTCGTTTCGTATATAGCCCGGCCCC
AGGAGACTTACTATATAGTGGTGGGGCGACTCGACTCGACTCGACGACTAACAACAACAGCGGCA
ACAACAACAACAACAACCACAACCACTATATGACTGTGTATGTGT
Right flanking sequence: Indices 67230 -- 67729
TGGGGCATGCCGATATGCGTATATGGGGCTCGTACACTCGTATTGTTATCGTACTAAGTGGTTAT
ACGGTTTCGGTACGAACCTTTACCACACGAAGCATGCCGTGCAGTATCGTGTTGCCTTGTGACTT
ACTGAGACTCATCAGCCGGATTCCAGTCGGTGCTATTGGCAGCAGGTGAGGTGAGAGGCGTAACT
ACCGATAGAGCTATGGGAGATCGATGTGCATTTCGAAACAGCGGGGACAACACGATTATTGTATA
GCAGGCCGCACTTGATACATGTTCGGGCCCCACCGTACGTCAATAACTGTAGCAGGCCGCACTTG
ATACATCGGGCCCCACCGTACGTCAATAACTGCGAAATCGAAACATGTTGGAAGTGCGCTTGACA
ACGTAGCTGTAACGCAACAAGCATCCATTCTAACATCACTTGTTTCTACGACCATCATTGCACTC
ATTCGTCAATGGAAATAGCTCAACATACTGCGGTACTAGAGGGAG
Found at i:67219 original size:15 final size:15
Alignment explanation
Indices: 67176--67229 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
67166 GTGTATGTGT
*
67176 GTGGGGTGGCGCGGC
1 GTGGGGTGGCGTGGC
*
67191 GTGGCGTGGCGTGGC
1 GTGGGGTGGCGTGGC
* *
67206 GTGGGGTGGTGTGGT
1 GTGGGGTGGCGTGGC
*
67221 GTGGTGTGG
1 GTGGGGTGG
67230 TGGGGCATGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.00, C:0.11, G:0.65, T:0.24
Consensus pattern (15 bp):
GTGGGGTGGCGTGGC
Left flanking sequence: Indices 66676 -- 67175
GGTATCGGTAGAATCCATATTGAGGGTGGTCCCGTTACAGTGACCCGGGTGGCACATCTCTCACA
CTCCCGAAGATCCCAGCCATCACAGAGGGACTCCTTTCGGCGTGTCAATATGCTGCAAGTTACCA
TGCAAGCTTCCCACCCAGTAACGTGTTGACATTACGAAGGGAAGGGGTTACGGTTAGTTGGTCTC
ACCGTCGCACGACTAAGTAACCAGGGTTGCCGATCAGTAATGCTTTACAAACATGCGATATGGCA
ATACGGATTACCGACTTACGTGGGCGGGTCGGTGCTTCACCCGAATACAGGTACGTAGGTGAGCC
GCAATCATCAGCTCACCCTGAGACCTGATTCGTGGCCCACCTCGTTTCGTATATAGCCCGGCCCC
AGGAGACTTACTATATAGTGGTGGGGCGACTCGACTCGACTCGACGACTAACAACAACAGCGGCA
ACAACAACAACAACAACCACAACCACTATATGACTGTGTATGTGT
Right flanking sequence: Indices 67230 -- 67729
TGGGGCATGCCGATATGCGTATATGGGGCTCGTACACTCGTATTGTTATCGTACTAAGTGGTTAT
ACGGTTTCGGTACGAACCTTTACCACACGAAGCATGCCGTGCAGTATCGTGTTGCCTTGTGACTT
ACTGAGACTCATCAGCCGGATTCCAGTCGGTGCTATTGGCAGCAGGTGAGGTGAGAGGCGTAACT
ACCGATAGAGCTATGGGAGATCGATGTGCATTTCGAAACAGCGGGGACAACACGATTATTGTATA
GCAGGCCGCACTTGATACATGTTCGGGCCCCACCGTACGTCAATAACTGTAGCAGGCCGCACTTG
ATACATCGGGCCCCACCGTACGTCAATAACTGCGAAATCGAAACATGTTGGAAGTGCGCTTGACA
ACGTAGCTGTAACGCAACAAGCATCCATTCTAACATCACTTGTTTCTACGACCATCATTGCACTC
ATTCGTCAATGGAAATAGCTCAACATACTGCGGTACTAGAGGGAG
Found at i:67581 original size:48 final size:49
Alignment explanation
Indices: 67488--67586 Score: 173
Period size: 48 Copynumber: 2.0 Consensus size: 49
67478 GATTATTGTA
67488 TAGCAGGCCGCACTTGATACATGTTCGGGCCCCACCGTACGTCAATAACTG
1 TAGCAGGCCGCACTTGATACA--TTCGGGCCCCACCGTACGTCAATAACTG
67539 TAGCAGGCCGCACTTGATACA-TCGGGCCCCACCGTACGTCAATAACTG
1 TAGCAGGCCGCACTTGATACATTCGGGCCCCACCGTACGTCAATAACTG
67587 CGAAATCGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
48 27 0.56
51 21 0.44
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.20
Consensus pattern (49 bp):
TAGCAGGCCGCACTTGATACATTCGGGCCCCACCGTACGTCAATAACTG
Left flanking sequence: Indices 66988 -- 67487
ACGTAGGTGAGCCGCAATCATCAGCTCACCCTGAGACCTGATTCGTGGCCCACCTCGTTTCGTAT
ATAGCCCGGCCCCAGGAGACTTACTATATAGTGGTGGGGCGACTCGACTCGACTCGACGACTAAC
AACAACAGCGGCAACAACAACAACAACAACCACAACCACTATATGACTGTGTATGTGTGTGGGGT
GGCGCGGCGTGGCGTGGCGTGGCGTGGGGTGGTGTGGTGTGGTGTGGTGGGGCATGCCGATATGC
GTATATGGGGCTCGTACACTCGTATTGTTATCGTACTAAGTGGTTATACGGTTTCGGTACGAACC
TTTACCACACGAAGCATGCCGTGCAGTATCGTGTTGCCTTGTGACTTACTGAGACTCATCAGCCG
GATTCCAGTCGGTGCTATTGGCAGCAGGTGAGGTGAGAGGCGTAACTACCGATAGAGCTATGGGA
GATCGATGTGCATTTCGAAACAGCGGGGACAACACGATTATTGTA
Right flanking sequence: Indices 67587 -- 68086
CGAAATCGAAACATGTTGGAAGTGCGCTTGACAACGTAGCTGTAACGCAACAAGCATCCATTCTA
ACATCACTTGTTTCTACGACCATCATTGCACTCATTCGTCAATGGAAATAGCTCAACATACTGCG
GTACTAGAGGGAGAGGGGCTCAACACGCGGTCAAATGCATGTAGGGTAGGGTAGGGTACTACGTA
ATGTAGAAAGCGACAGCGTAATATCAGGTAATATCGTTACGCTAGATAACCAGTCCCCCGTTCAG
TACGGTATTCATAACAGTATTCCAGCAGCACTTATTCCCTTCCCATTCCATGATCTCACCTTCAG
GCTGGTAGACAGATGAGTGAACTAGATCACTTGCACACCGCCCTTGGTATGACAATGCTCCATCG
TCACAGAGTGTCACGCCTTGTTACCTTGTGACATATGGCTCAATCGACGTGTATGTTGGCAGGAT
GCGACCAGTACACAGGGGAACTCTCATATCAAGTCCAGTTTGAAC
Found at i:68199 original size:31 final size:31
Alignment explanation
Indices: 68164--68222 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
68154 ATAGTGGCGT
68164 CCCCCATGTGCCGGTCAGGTAGTTGGTCAAG
1 CCCCCATGTGCCGGTCAGGTAGTTGGTCAAG
*
68195 CCCCCGTGTGCCGGTCAGGTAGTTGGTC
1 CCCCCATGTGCCGGTCAGGTAGTTGGTC
68223 GGCCTCTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.12, C:0.31, G:0.34, T:0.24
Consensus pattern (31 bp):
CCCCCATGTGCCGGTCAGGTAGTTGGTCAAG
Left flanking sequence: Indices 67664 -- 68163
TCTACGACCATCATTGCACTCATTCGTCAATGGAAATAGCTCAACATACTGCGGTACTAGAGGGA
GAGGGGCTCAACACGCGGTCAAATGCATGTAGGGTAGGGTAGGGTACTACGTAATGTAGAAAGCG
ACAGCGTAATATCAGGTAATATCGTTACGCTAGATAACCAGTCCCCCGTTCAGTACGGTATTCAT
AACAGTATTCCAGCAGCACTTATTCCCTTCCCATTCCATGATCTCACCTTCAGGCTGGTAGACAG
ATGAGTGAACTAGATCACTTGCACACCGCCCTTGGTATGACAATGCTCCATCGTCACAGAGTGTC
ACGCCTTGTTACCTTGTGACATATGGCTCAATCGACGTGTATGTTGGCAGGATGCGACCAGTACA
CAGGGGAACTCTCATATCAAGTCCAGTTTGAACAAACCCTTCGTACCGTATATAGTGGCGTCCCC
CATGCCACCGTTTGAACAAACCCTTCGTACCGTATATAGTGGCGT
Right flanking sequence: Indices 68223 -- 68722
GGCCTCTCTATATAACCCCGCACTCTCACATCTCCGGAGTTCACTTATCCATCCGAACGAAACAC
GGGCGCAACAAGGCCAACACAGTTTCATCAGCACTTAGGGAAAGGGTTCCCGATTACTAACCTTA
CAAAGCGCACAGCAGTCCGGGCTGGATATAACACACTTGTTACACAGCTGGGGCATGCATGCATA
CTAATAGACCGGGGGGTTCACGGTCAGCGTGGTGGGTTAGTATAATAGACCGGGGGGTTTCACGG
TCAGCGTGGTGGGTTAGTATGCGAGCACCAACTCACTCTCGCACCTCCCACGCACGCGTATCACA
ATAACAACAACAACTTAGTTGGTCAATCCATCATGTTTCCAGTCATACTTGACCATGCATTGGGT
GAAGTCGATACTTAACCCATCCTTCATCTGCAACTCCGAACTACCCCACCCACATACTGGCAGTG
GTAGCACCCTCCGACCGTCGGCTTTTGGTACTGGTATATCACAGC
Found at i:68476 original size:41 final size:42
Alignment explanation
Indices: 68419--68502 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
68409 GCATGCATAC
68419 TAATAGACCGGGGGG-TTCACGGTCAGCGTGGTGGGTTAGTA
1 TAATAGACCGGGGGGTTTCACGGTCAGCGTGGTGGGTTAGTA
68460 TAATAGACCGGGGGGTTTCACGGTCAGCGTGGTGGGTTAGTA
1 TAATAGACCGGGGGGTTTCACGGTCAGCGTGGTGGGTTAGTA
68502 T
1 T
68503 GCGAGCACCA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 15 0.36
42 27 0.64
ACGTcount: A:0.19, C:0.14, G:0.40, T:0.26
Consensus pattern (42 bp):
TAATAGACCGGGGGGTTTCACGGTCAGCGTGGTGGGTTAGTA
Left flanking sequence: Indices 67919 -- 68418
GACAGATGAGTGAACTAGATCACTTGCACACCGCCCTTGGTATGACAATGCTCCATCGTCACAGA
GTGTCACGCCTTGTTACCTTGTGACATATGGCTCAATCGACGTGTATGTTGGCAGGATGCGACCA
GTACACAGGGGAACTCTCATATCAAGTCCAGTTTGAACAAACCCTTCGTACCGTATATAGTGGCG
TCCCCCATGCCACCGTTTGAACAAACCCTTCGTACCGTATATAGTGGCGTCCCCCATGTGCCGGT
CAGGTAGTTGGTCAAGCCCCCGTGTGCCGGTCAGGTAGTTGGTCGGCCTCTCTATATAACCCCGC
ACTCTCACATCTCCGGAGTTCACTTATCCATCCGAACGAAACACGGGCGCAACAAGGCCAACACA
GTTTCATCAGCACTTAGGGAAAGGGTTCCCGATTACTAACCTTACAAAGCGCACAGCAGTCCGGG
CTGGATATAACACACTTGTTACACAGCTGGGGCATGCATGCATAC
Right flanking sequence: Indices 68503 -- 69002
GCGAGCACCAACTCACTCTCGCACCTCCCACGCACGCGTATCACAATAACAACAACAACTTAGTT
GGTCAATCCATCATGTTTCCAGTCATACTTGACCATGCATTGGGTGAAGTCGATACTTAACCCAT
CCTTCATCTGCAACTCCGAACTACCCCACCCACATACTGGCAGTGGTAGCACCCTCCGACCGTCG
GCTTTTGGTACTGGTATATCACAGCCTCACAGCTCGGGGTAAGAAATACATCCTTGTTAGAGCGT
CTTCCGAAAAAGGACCCACCCAGGGAATAGCGTTGGGCAAGCTCGATCAACCTTTACGTAATAGG
TGGGTGCGAAACCGGCCCGCCCTTTGTATCAAGTTTCGAGTAATCGACACGGCAGGGGTGTGGGG
TGTGAGACAGCGCGTAAACAACAAAGCCTCATTACCTAGGGGTGTGGGGTGTGAGACAGCACGTA
AACAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTTCAACGA
Found at i:68938 original size:49 final size:49
Alignment explanation
Indices: 68881--68978 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
68871 TCGACACGGC
*
68881 AGGGGTGTGGGGTGTGAGACAGCGCGTAAACAACAAAGCCTCATTACCT
1 AGGGGTGTGGGGTGTGAGACAGCACGTAAACAACAAAGCCTCATTACCT
*
68930 AGGGGTGTGGGGTGTGAGACAGCACGTAAACAACGAAGCCTCATTACCT
1 AGGGGTGTGGGGTGTGAGACAGCACGTAAACAACAAAGCCTCATTACCT
68979 GTATGGTACG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.29, C:0.20, G:0.33, T:0.18
Consensus pattern (49 bp):
AGGGGTGTGGGGTGTGAGACAGCACGTAAACAACAAAGCCTCATTACCT
Left flanking sequence: Indices 68381 -- 68880
TAACACACTTGTTACACAGCTGGGGCATGCATGCATACTAATAGACCGGGGGGTTCACGGTCAGC
GTGGTGGGTTAGTATAATAGACCGGGGGGTTTCACGGTCAGCGTGGTGGGTTAGTATGCGAGCAC
CAACTCACTCTCGCACCTCCCACGCACGCGTATCACAATAACAACAACAACTTAGTTGGTCAATC
CATCATGTTTCCAGTCATACTTGACCATGCATTGGGTGAAGTCGATACTTAACCCATCCTTCATC
TGCAACTCCGAACTACCCCACCCACATACTGGCAGTGGTAGCACCCTCCGACCGTCGGCTTTTGG
TACTGGTATATCACAGCCTCACAGCTCGGGGTAAGAAATACATCCTTGTTAGAGCGTCTTCCGAA
AAAGGACCCACCCAGGGAATAGCGTTGGGCAAGCTCGATCAACCTTTACGTAATAGGTGGGTGCG
AAACCGGCCCGCCCTTTGTATCAAGTTTCGAGTAATCGACACGGC
Right flanking sequence: Indices 68979 -- 69478
GTATGGTACGTCCTCCTTCAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTTGGTAGACCTG
ACCACCACAAACCACGCACGCATATGGGAAACCAACCGTACCAATTGGCCATTTCGTAAAGGGGC
TTACAGCTCCAACTCGGCTCATTAAGCAACAGGGCGGTCACAGATCACAACATCAACAGGACGGT
CATATGGTTGAGCGTTATGCGGCCCACCCATATAGAGGCTCGGTGTTACGCGCATGATCACGGCA
GGTCCAGACCTATCGATGATATGAAAGACCGTATGTACGGGGCCTCGTGCATCATTAAAGTTACA
CTACTTACTCCGTAGTACTTCCGACGATTCTATACAACAAGTGACGGGCAACAACCATGAGACTA
TACGTACATGAACAACCATGAGAGTGCTTGAACGGATCATGGTAATGTGTACGGAAAGACGGTAC
CAGTATGGCGAGGTCACTGCCGGTAACTACACAACCTCAACCGCA
Found at i:69010 original size:37 final size:37
Alignment explanation
Indices: 68960--69033 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
68950 AGCACGTAAA
68960 CAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTT
1 CAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTT
68997 CAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTT
1 CAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTT
69034 GGTAGACCTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.32, G:0.16, T:0.30
Consensus pattern (37 bp):
CAACGAAGCCTCATTACCTGTATGGTACGTCCTCCTT
Left flanking sequence: Indices 68460 -- 68959
TAATAGACCGGGGGGTTTCACGGTCAGCGTGGTGGGTTAGTATGCGAGCACCAACTCACTCTCGC
ACCTCCCACGCACGCGTATCACAATAACAACAACAACTTAGTTGGTCAATCCATCATGTTTCCAG
TCATACTTGACCATGCATTGGGTGAAGTCGATACTTAACCCATCCTTCATCTGCAACTCCGAACT
ACCCCACCCACATACTGGCAGTGGTAGCACCCTCCGACCGTCGGCTTTTGGTACTGGTATATCAC
AGCCTCACAGCTCGGGGTAAGAAATACATCCTTGTTAGAGCGTCTTCCGAAAAAGGACCCACCCA
GGGAATAGCGTTGGGCAAGCTCGATCAACCTTTACGTAATAGGTGGGTGCGAAACCGGCCCGCCC
TTTGTATCAAGTTTCGAGTAATCGACACGGCAGGGGTGTGGGGTGTGAGACAGCGCGTAAACAAC
AAAGCCTCATTACCTAGGGGTGTGGGGTGTGAGACAGCACGTAAA
Right flanking sequence: Indices 69034 -- 69533
GGTAGACCTGACCACCACAAACCACGCACGCATATGGGAAACCAACCGTACCAATTGGCCATTTC
GTAAAGGGGCTTACAGCTCCAACTCGGCTCATTAAGCAACAGGGCGGTCACAGATCACAACATCA
ACAGGACGGTCATATGGTTGAGCGTTATGCGGCCCACCCATATAGAGGCTCGGTGTTACGCGCAT
GATCACGGCAGGTCCAGACCTATCGATGATATGAAAGACCGTATGTACGGGGCCTCGTGCATCAT
TAAAGTTACACTACTTACTCCGTAGTACTTCCGACGATTCTATACAACAAGTGACGGGCAACAAC
CATGAGACTATACGTACATGAACAACCATGAGAGTGCTTGAACGGATCATGGTAATGTGTACGGA
AAGACGGTACCAGTATGGCGAGGTCACTGCCGGTAACTACACAACCTCAACCGCAAGTGGCCGGA
CCCGTTCTGGCGTGTCGGAAAGCTCAGGTGGAATGGGAATGGAGT
Found at i:71431 original size:19 final size:18
Alignment explanation
Indices: 71407--71443 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
71397 ATCATCTATA
71407 TATGGTGGCGGAAGTCAGG
1 TATGGTGG-GGAAGTCAGG
*
71426 TATGGTTGGGAAGTCAGG
1 TATGGTGGGGAAGTCAGG
71444 CTTTACCGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.22, C:0.08, G:0.46, T:0.24
Consensus pattern (18 bp):
TATGGTGGGGAAGTCAGG
Left flanking sequence: Indices 70907 -- 71406
GGAATGGATTTCGCGCTACACCGTGCATGATACAAGGTGCGGTTGGTAGTTCCTGAATTGATGAA
CTGCTAGGATCATGTTGCCTTGAACGTTATGATCAGTGTGGGTGGAACCGTATGAAAGTGCAAGT
TCGGGCAGACTGAGAGTTCAGGCGTCTTATTGTGCGGGTAAGGATCAAGGCACACACATCATTTG
GGTGGGCCCGATGTTGGTAGGGCGGGGAGTGCACAAAGACTGGTGGTTAAGGTCCCGACTGGGCT
AGCGGCACCTGGTTGGCGGAGCTACTGGAGTGGATTGCCTAGTAAGAAGGCCAACTTCGGAACGG
TTTTGGGCACAAGTATATTGTACGTAAACACCGCAAGTAAGTACGTCGTACGCGTAGTCAATAAA
GGAAGGTAGTCAGTCCGATCAGGGAGTTAGCCAGAATAAAGGAAGGTAGTCAGTCCGATCAGGTC
AGGGAGTTAGCCAGTCGTACGAGTCAACCATCTATATCATCTATA
Right flanking sequence: Indices 71444 -- 71943
CTTTACCGTCTCACCTGAACGGCGGTGTTCAAGGCTTCCTCGTCTCACCTGGCGCTCTCGTACCA
TCAGCGTCACAAGGCGTGTAAAGGGCGTTACAGTCCCTAGTTCGAGTAGCCCCCCTCCTGACGTC
GCCTCGGCCGCACACAACTAACGCCGTACTCAACTACAGAAGAGGAGCGGGACAAGTACTAGGGG
CAGACGGCCCAGGCTCACACAGACATGCTTCTATCTGGTCGCACATTCCACCTGGTCTCACTTCG
AAATGCGTTAACCTGGTAGGCGGTACAAGCTCCATCACCCGAATCACCGGCAAAGGGATTCCGCT
CCTTAGGCAACTTGGAATAAGGTTAGTGCATATGCCGGGTTCCTCGGACAAGTCGTCTATGTGAC
ACGGGGTCCGATACACTGTTCGAGGAGCGGTGAACTGAACTTGGAGAGGAGGAAGGCAGATACGG
ATATTCTAGAGAGTAATCAAACCAACTGTCCGCATACGCCACATA
Found at i:83174 original size:22 final size:22
Alignment explanation
Indices: 83148--83213 Score: 109
Period size: 22 Copynumber: 3.0 Consensus size: 22
83138 ACCACCCAAC
83148 CCCGCACAGGGCAGC-CGGTGAA
1 CCCGCACAGGGCAGCTC-GTGAA
83170 CCCGCACAGGGCAGCTCGTGAA
1 CCCGCACAGGGCAGCTCGTGAA
83192 CCCGCACAGGGCAGCT-GTGAA
1 CCCGCACAGGGCAGCTCGTGAA
83213 C
1 C
83214 AGCACTAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
21 6 0.14
22 36 0.84
23 1 0.02
ACGTcount: A:0.23, C:0.36, G:0.33, T:0.08
Consensus pattern (22 bp):
CCCGCACAGGGCAGCTCGTGAA
Left flanking sequence: Indices 82648 -- 83147
AGGGAATTTGATCTACACCGGCTACAGGAGGGATCGGTAACGTTACGACGAGGGAAGGGGTCTAC
ACTGGCTATGGCAGGGGCAGCTACAGGCCCCCACACTCACTCATATGTAACACTACCCGGTTCGC
GTCAAGGGTATAACCAACTGCCCGCAATAGAACAACATAAGGGAAGGGGCCTCTCTATATAACCG
TAGCGAGCAGGAAAACACATGTGCTCCGGCTCCGTGCTATATGGAAAGGGAAAGCTACAGGCAGT
ATCGGGGACACTCAATATATACTAGTCGCTGGCTCACGTCCATCTACCTCAGTGGCCAGGTCTGT
AGGGCCAGTCGAGTGAGCTTTGCTTTCCCCGATACTGGGTGGGCGGCCATGGTATATAGTTCCTT
TCCCCAACCCCTGTGTGTTATGTAGCCTTCGGGTATTGTAAATCGAACACCCCCTCACTGCACAT
GCTTCGGGGATCACGCCCTACCCGGCAACCCACTTACCACCCAAC
Right flanking sequence: Indices 83214 -- 83713
AGCACTAATACGGGGATAACGTAACAACCTCAACCGGGGGGAAGAAGAATTATGTAGGGTGTCGG
AAAGCGGGGCGTAGAGGAAAGAGGTAACAACTCCCCCAGGTTCGTAAAGCACCTTCGTTTTATTA
GATACATAAGTGTGCCGGGAAACGGCAATGTGGTTGTGGGTTTTTCACTTGATTCTGCAGCCGAG
CTCATGCGAAGCTCACTAGGGACCTACGTGTAGCGTATAACCGAGTCATCCTCGTTTGTGAATGT
CAGTCTCCGTGAACTGCCTGCGGGTTGTGACTTGCACCGTGAACTGCCTGGGTGGGCGCGCCGAA
ACTTGACAGCCCAGATACATAGTGCGTTAAAGCCCCGATCACACAGATGGTTATGAGTGTTTACC
GTGGTTAGTTGAGACATCGTTTTCAAAGTGAACTGCATCAACGGTCCGGGGGCATATGGTTTTCA
AAGTGAACTGCATCGACGGTCCGGGGGCATGTTCGCAATGAAACG
Found at i:83677 original size:40 final size:40
Alignment explanation
Indices: 83622--83698 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
83612 TTGAGACATC
83622 GTTTTCAAAGTGAACTGCATCAACGGTCCGGGGGCATATG
1 GTTTTCAAAGTGAACTGCATCAACGGTCCGGGGGCATATG
*
83662 GTTTTCAAAGTGAACTGCATCGACGGTCCGGGGGCAT
1 GTTTTCAAAGTGAACTGCATCAACGGTCCGGGGGCAT
83699 GTTCGCAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (40 bp):
GTTTTCAAAGTGAACTGCATCAACGGTCCGGGGGCATATG
Left flanking sequence: Indices 83122 -- 83621
ACCCGGCAACCCACTTACCACCCAACCCCGCACAGGGCAGCCGGTGAACCCGCACAGGGCAGCTC
GTGAACCCGCACAGGGCAGCTGTGAACAGCACTAATACGGGGATAACGTAACAACCTCAACCGGG
GGGAAGAAGAATTATGTAGGGTGTCGGAAAGCGGGGCGTAGAGGAAAGAGGTAACAACTCCCCCA
GGTTCGTAAAGCACCTTCGTTTTATTAGATACATAAGTGTGCCGGGAAACGGCAATGTGGTTGTG
GGTTTTTCACTTGATTCTGCAGCCGAGCTCATGCGAAGCTCACTAGGGACCTACGTGTAGCGTAT
AACCGAGTCATCCTCGTTTGTGAATGTCAGTCTCCGTGAACTGCCTGCGGGTTGTGACTTGCACC
GTGAACTGCCTGGGTGGGCGCGCCGAAACTTGACAGCCCAGATACATAGTGCGTTAAAGCCCCGA
TCACACAGATGGTTATGAGTGTTTACCGTGGTTAGTTGAGACATC
Right flanking sequence: Indices 83699 -- 84198
GTTCGCAATGAAACGCACAGAGTGTTTTTCTGATACGTGATATCCGGCCATTGTTGATCACCATG
ACGCTGTTATGAGAAATGATGTTCCACAGCCACGCATGGGCTACCAGCTGGAAGAAGGCACAGCA
TCGGAAGGTACGGCTTGCACCACACCAGGTGTTGCATTGCTCGATTGCAACCCACAACGAATAAA
CACACCCATTGGATGAGGTACCGCAGGTGGGTGACGGGAGTCCTCCCCCAACTCGTCGGCATTTC
CTGAGAGCTGCCGTTATAGTTGTGGTTGGTGGCGTTATCGCACGCAACATCCTCGTCTGGTTACA
CGGGCTGCTGTGGAATGCGCTCGTCTGGTTACACGGGTTGCTGGAATGCGCTCGTGAACGCGAGA
GTCGAACCGCTGCGTCAATATTGACGCTGCCGCGGAACAACTGTCGACTCTCGTCAATAGTACGC
ACCATGTACGGAACTTGAAACACCCGTTTCACCCTCATTGCATGC
Found at i:84072 original size:31 final size:32
Alignment explanation
Indices: 84010--84078 Score: 113
Period size: 33 Copynumber: 2.2 Consensus size: 32
84000 ACGCAACATC
84010 CTCGTCTGGTTACACGGGCTGCTGTGGAATGCG
1 CTCGTCTGGTTACACGGGCTGC-GTGGAATGCG
*
84043 CTCGTCTGGTTACACGGGTTGC-TGGAATGCG
1 CTCGTCTGGTTACACGGGCTGCGTGGAATGCG
84074 CTCGT
1 CTCGT
84079 GAACGCGAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 14 0.40
33 21 0.60
ACGTcount: A:0.12, C:0.25, G:0.35, T:0.29
Consensus pattern (32 bp):
CTCGTCTGGTTACACGGGCTGCGTGGAATGCG
Left flanking sequence: Indices 83510 -- 84009
CCGTGAACTGCCTGGGTGGGCGCGCCGAAACTTGACAGCCCAGATACATAGTGCGTTAAAGCCCC
GATCACACAGATGGTTATGAGTGTTTACCGTGGTTAGTTGAGACATCGTTTTCAAAGTGAACTGC
ATCAACGGTCCGGGGGCATATGGTTTTCAAAGTGAACTGCATCGACGGTCCGGGGGCATGTTCGC
AATGAAACGCACAGAGTGTTTTTCTGATACGTGATATCCGGCCATTGTTGATCACCATGACGCTG
TTATGAGAAATGATGTTCCACAGCCACGCATGGGCTACCAGCTGGAAGAAGGCACAGCATCGGAA
GGTACGGCTTGCACCACACCAGGTGTTGCATTGCTCGATTGCAACCCACAACGAATAAACACACC
CATTGGATGAGGTACCGCAGGTGGGTGACGGGAGTCCTCCCCCAACTCGTCGGCATTTCCTGAGA
GCTGCCGTTATAGTTGTGGTTGGTGGCGTTATCGCACGCAACATC
Right flanking sequence: Indices 84079 -- 84578
GAACGCGAGAGTCGAACCGCTGCGTCAATATTGACGCTGCCGCGGAACAACTGTCGACTCTCGTC
AATAGTACGCACCATGTACGGAACTTGAAACACCCGTTTCACCCTCATTGCATGCAACCATACTG
AACCGTTCTGATGCATGTCTACACGTACACTAACTGCCATGAGATTATTAGAATACACCAAGTAC
CAGTGTTGCGGTGTGCCCAATACGCCGGCTTCGCACCTCATATTCATCTTCCTCACAGTCCGGGC
CCAGGTTCGTAAAGCAAGCAGTCCCTATCCGGAATGCGTAGTGCTTTCTCCCAAGTATACCTGTT
ACCGCATGGTTGTGTTTCGACCAAGCCTACATAACAGCTTCTTGATCTTGACATGCATTCCTAGT
TGGCAGCTGCACAAAAGTCAATGACCATATCAGCCAGTCCACTCTTCTGAATGAGCGGTTCTTGA
TGTGGCGCACGGTTACTGGCCCCACAAACGGTCGAGTGGTATGAT
Found at i:86240 original size:48 final size:49
Alignment explanation
Indices: 86143--86242 Score: 150
Period size: 48 Copynumber: 2.0 Consensus size: 49
86133 CGTATCGTAA
86143 CAAGGCAACATCGGGATTACTAGTCCGTCCTAGCCCATCCCACCACCCCACG
1 CAAGGCAACATCGGGATTACTA---CGTCCTAGCCCATCCCACCACCCCACG
86195 CAAGGCAACATCGGGATTACTA-GTCCTAGCCCATCCC-CCTACCCCACG
1 CAAGGCAACATCGGGATTACTACGTCCTAGCCCATCCCACC-ACCCCACG
86243 TACTGATACC
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
47 2 0.04
48 23 0.49
52 22 0.47
ACGTcount: A:0.25, C:0.42, G:0.17, T:0.16
Consensus pattern (49 bp):
CAAGGCAACATCGGGATTACTACGTCCTAGCCCATCCCACCACCCCACG
Left flanking sequence: Indices 85643 -- 86142
CATGCGTTTCAAACAGCTTGTTGCCGGCTTTCCACTGATGATCGGTTACCGTACCGTACCGTACA
TAGTGGTGGGCGATTGTGCTTGAGTGGGCTGGTTCGCTGAATCAGGCTCGATTGATTTCGGAGGT
GACCTATCTATCCCAGTACACAAGCTCAAAACCTTGGATATGGCTGGGCGTTTAGCGCTGCCACA
TCCGCGCATGGTAACTTTTGTCCGTTCCTTCATGAGCTTTCCCCGAGTTGGCAGACCGGGTCATT
AGCGGGCAGTACCCTTACTTGGAATAGTCTCTGGCCGTTGTTCATCGATGCCACCACCCACCTTC
ATCCCACTATATACGCATGACCTTGCCACTTGGCGAAGTCTGAGCTCCATTATCGTAGCTACGTG
AAAAATCAATCTAGATATATACATCTTACCAGGTTTCATATGGCTTACTTAGGGAGGGTTGTGTC
GATGACAGGTGAAAATATCGGGTCTATCGCGTGCGCGTATCGTAA
Right flanking sequence: Indices 86243 -- 86742
TACTGATACCTCTCTATATAACCCCGCGTTTGTTCCCCGCTCCGCGGGCGTACATCAATCACTCC
CCGTGTGTGCGTTTAAACGCCTAAGCGGGTACCGCACAGGGCCCGTACGATCGGGTGATAGTAAC
CCTCTTTTTCGTGTGGAACACAAAGGGCTAGGGTAACTGCTCCCCGTCGGGGTGACTTGCCACGC
TCGTTATCCTTCTCCGCAGGGTAGCTCAATGATAGTTCCCGTCTCGTTGTGGTTGCGAGCTTAAG
TAACTCAATTGTTCTCACTTGCTTCGGTCGAAAGCCCACATTGACGTTCTTGTCCGTCGCTCTCC
GCTTACGCAGGGTGACCGGTCGTTCCCGCCCCCGTATGAAGGCTTTACCTTCGAAGAGACCGTAG
GGCGCATTAAGGCGGATACTACTTACCACATACTTGGTTTGTTAGGAACTGTTATTGACAGGAAC
CGGGCAACCTCTTCTATGTGACGGGGTGCGATGCATCGTTAAGCT
Found at i:87047 original size:3 final size:3
Alignment explanation
Indices: 87039--87063 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
87029 ACTAGTCTAC
87039 GTA GTA GTA GTA GTA GTA GTA GTA G
1 GTA GTA GTA GTA GTA GTA GTA GTA G
87064 CTCTTATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GTA
Left flanking sequence: Indices 86539 -- 87038
CACATTGACGTTCTTGTCCGTCGCTCTCCGCTTACGCAGGGTGACCGGTCGTTCCCGCCCCCGTA
TGAAGGCTTTACCTTCGAAGAGACCGTAGGGCGCATTAAGGCGGATACTACTTACCACATACTTG
GTTTGTTAGGAACTGTTATTGACAGGAACCGGGCAACCTCTTCTATGTGACGGGGTGCGATGCAT
CGTTAAGCTGAAGATTGTGTAACCACTGTTGTTAATCATCGTCTATACCGGGCTGCTGTGGGGAG
TTGATTAGCCGACTTTGCAATGCACGTTCACGCGCCATCGTCCTGGAATTATTCTACTTAAGAGA
CTCATGAGATGGCTGGTTTCAACCCCCACTACCCTTCGTAAGCTTATCGGCCTATTAACCGGGGT
GTAGGAGTCATTAACGAAAACAGAAGTCCGAACTTACCTTTCCAAGTAGGACGCCTTGGGCCACC
ACACCACACCAACACCACCCCACCTCAATAACTTAACTAGTCTAC
Right flanking sequence: Indices 87064 -- 87563
CTCTTATACTCGCTTAATAAGGAATTGACAGTATAAAGAAGATACACGAACTCCCTTATTGGTAA
GCGGTTAGATCACGCTATGCACTGCTGTCTACCAGTCTACCCACGTGTACCTTTGCCATAAAAAG
GGAGGTATTGATACAGCGAATCATCGACCATGAAAAGTGAGTTACTGAAAGAAAGGTATGCAATA
GGGCTTGGGATGATCAAGAGTATGGGCTGGGCCACCCAGTATCAGCGGGAACTTTTTGTTAGTAA
AGCGGCACAGTGACGTGTAAGTAAAACTACGAAAGCTAGGCAATTGTTGGGTTATATAGATGTGA
GGTGCGGCGGCAGTTATTGACGTACGGTGGTAGTGATAATAATCCATTGTCCACTAAGGTAGTAC
AATGTCAATATAGCGTTCAAAAGATAGTCAATGCCTGATACTATCACTAGTCTGCCATCCCAACT
CACGGTGTAACTGACGCTCCACGCGGGGCCACTCCCTTGCAACTG
Found at i:88571 original size:5 final size:5
Alignment explanation
Indices: 88561--88586 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
88551 AGTGACCTGA
88561 TTACG TTACG TTACG TTACG TTACG T
1 TTACG TTACG TTACG TTACG TTACG T
88587 ACTATATAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTACG
Left flanking sequence: Indices 88061 -- 88560
CTTTGTGAAAGCGAGCCGGCGGCTGCTGTAGGGTGGGCTTCGAGACTTCAACATGCCTCTTGTAA
GGGACGGTTGTTCAAGTAAGAGGTGATAGCCGGGTAACGGAGGGCGGTTCGTGCCTTTCTGTCTA
CACTAAACCGCCGCTTGATTACCTGATTACCGTTCTAAGGGAGCGTACCACACCATCCTTCGAAT
TAGTAAATCAAAGGAGCAGTAGAGAAGGTTACCGTAAACCTTGACTATAAGCCGCCCGTCCTGGG
CCTATGACTCAACCATAAAGCATCGGATGAGCCGACTGGGCAATTCCCAACCCCAGGAGCATAAC
TCAACTTCCCTTCGCTGGGGTTCATGGGGTTCAGTATGGTAATTCCGCTCTGTCGGTGTAACAGT
CAAAGCGACGGCTACCTACTTCCGAACGGCAACTAACGCCCTTCGAAGAAAGGTTGTTATCTGAC
TGCTGGACTATGTTAAAGTCGAGTGCGGTGCACTTAGTGACCTGA
Right flanking sequence: Indices 88587 -- 89086
ACTATATAGGCGGGCGGGCGGCGGGCGGCAAGGCAAGGCAAGGCATAACCGGCCGTCTCGCCCGC
ACATTGCCGCATTGGGTGGGCAGTAAAGCGCCCTGCTTACGGTGAAGGTAACCAGCAGAGAGTTA
CGGTTTACACCAACCAAGGTACTCTGATTGAGTGATGTTATTGAGGTGGGGTGGCTTGTGCTGGT
TGGAATTGCTTACGGGGAATCCTCCTCCGACACGCCCACCCAGTGTTTGGGGTTGGGGAAACTCC
TGCACGAGGCGAGGCGTTATGGTTATGCCACCCCACCTCAATAACGTTTGATAACGTAGTCCCAT
ATAGAGCGGTTGCTGTAGTGGTAATTGTTTGTTGCTGCGGTTTACGCATAGTGAGAATGGTTTGT
TGCTTACGTAATCGCATAGTGGAAGTGGGTTACATGGCCATATACGTGTGAGTTCATACTGAATC
GTTCCGTTCGTATATGAGCCATATCTGCAACCAGATAATACAAGG
Found at i:91714 original size:13 final size:13
Alignment explanation
Indices: 91696--91721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91686 CCTTGGAAAT
91696 AGATCGGACTGGC
1 AGATCGGACTGGC
91709 AGATCGGACTGGC
1 AGATCGGACTGGC
91722 GCGGGTGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.38, T:0.15
Consensus pattern (13 bp):
AGATCGGACTGGC
Left flanking sequence: Indices 91196 -- 91695
TAGCGCGCTTCGCCTACAGCCCAGCCAGCGTAAATGGATCCATCTACTCCATCTACGTAGTGGGA
TAGTTACGAGGCCCTACCCTACCGCACGTTGATTGAGGGGTGTTGCAAGCTCAGAAACGCATGGC
TCGAACCACAAGTAAACGTAGCCGGGGTGGCGGGGGTTAGTTACCCCTTAAGCGCCCCACTCCTC
TTTCGTTGTTCCAGCGCCTACTAGAATACGAAGTTCCAGCGCCATACCAGATAATAGAAGGATAT
TATGTAACACGAGGGAAGGGGTTGTAACTGCCCTGTGAGCGAAGCGAACCCCTTCCTCTTTCGCC
TTCTACCCGGAGCTCCTGATAAAACTATATGAGAACCCTGGTTACCCCTGCCAGCGTCACATATG
CGGGGAAAGCTCGAGCAGGTTCGGGGATGGATGAACCCCCCACGTTGTTACTGGGTGGGCGGAAC
ATGTAGGCTACAGGGTAGGGTAGGGGATTCCCTTCCCTTGGAAAT
Right flanking sequence: Indices 91722 -- 92221
GCGGGTGAAGCTGCTCTGTAAATGCGTTGCTACTCAACGCTTATGAAGTAACCGTATATATACGC
TGGCTGCTTCGTCGGGTCCTCCACTCTGCTACCATGGGGGACGAAACTCAACACTGGTGAGTGAC
CCAGGGGAACTCTCGTAGTGAGTGGAACCTCTATATGTGGGGGTGAGTGACCCTTGACCGATGTT
GTGTCATGTTCCCGCGATGTTGCGTATCTACACAACGCCCACACGGGGAACGACCTAGTAAGGCC
CCGGGAAGGATTACGAGTAAGCATGGTAGCCCTGTGCTCCGCGGTTCCCGATGTCGCGTATCGTA
ACAACGCCCACACGGGTCACTCTATATATAGATACCCCGGGCCTTCCTTTCCCCGTCCGCCCTAC
GTATCTTGTAAAGGTTGCATAAATGCCGCTGGTGCAACCAGGCGATTGTGTTGTGCCGCTTCGGC
GCGCCCCCGTACGGTGTTTCAGAATGCGGTGCGTCGTGTACGAGT
Found at i:94548 original size:5 final size:5
Alignment explanation
Indices: 94540--94564 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
94530 CTTCTATATA
94540 GTACG GTACG GTACG GTACG GTACG
1 GTACG GTACG GTACG GTACG GTACG
94565 CACCTGGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (5 bp):
GTACG
Left flanking sequence: Indices 94040 -- 94539
TGGGTTCATTTACTAGATCGAGTTGACATGGCCTTAGGCTGGATTTCGGTTACTCGGTAACAAGA
GGAGAGCGATTCTAGTATGTGCGGCGTTAACCCAGTTACGTCAGGCCACCACACAACGAAGGACT
GCTCTGGAAAGTGGGCAGCTCTAGATAATCATCTGTAGCGCCTACGTAACTCGACAGTATCCGTA
GGTGACCCTCGACGCTGAGTTCTGGGTTGCGGAGGATGGCAGATCGGCGCCGTAACCGTTCCTGA
TGTTGGTACCGGTCAGCAACACTCGCCTTTAGAGAGCGTGAAAGAAGTAGCCCCTGCACATGCCG
GGATGCATAACGCGCCTTGCGAGCAGAGCACTCCTCCGTATATGAAGTTAGATCGCAAAAGCATG
TATGTTTGGCACATGCATAAGCACGGTTATATGCTCCTCTGATAGAGCTCGTAACGCAGCTAGTC
CCTCGTACGAAGCTCGCCACGCCCCTCTTCTCTTCCTTCTATATA
Right flanking sequence: Indices 94565 -- 95064
CACCTGGTGGTGGGTTTATTTCCGTACGATGGTAGACCTTCCCCGCCCGTAGTTCCACCGTAAGT
CCCAGATGGAGACCTGTTTGGCCCTCGTGCAGTAGCTCTTGACGACTGGATAAGCCAAGCTTGTT
CAACCCGGGTTATATAGAGAGGTACGTACGCACATTTAATAAGGAACGGACTCTTATTAAGCGTG
TTCCCGGTCGTCCGCGTAGCTCCGGTATTGAAGGATCATGTGGCTGCAGATCTCAAGTCGTTAGA
TATATATATATTCATGAGTGTTGGAGATACACATCCTGCTTGTGGTATGCGCTTTCCATGGCATG
TGTAATCGTTCCTCGAAGATGGGCGGCCCGGTTCGAACGGTTGATTTCGGGAGCTACACCCATCC
GCGTGTGGGCGTTTGTCGTGCGGTAGGAACTATACGCATCTGCTTACGTCTAACAACATACGGCG
GTTTACCTTAGTCCATCCATCTAGGTTTTCGAACAGTGTGTGGCA
Found at i:100091 original size:23 final size:23
Alignment explanation
Indices: 100061--100106 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
100051 GCCATCAAGT
100061 CTACTTATGACGCTCACCTGTTC
1 CTACTTATGACGCTCACCTGTTC
*
100084 CTACTTATGACGCTTACCTGTTC
1 CTACTTATGACGCTCACCTGTTC
100107 AGTAGTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.33, G:0.13, T:0.37
Consensus pattern (23 bp):
CTACTTATGACGCTCACCTGTTC
Left flanking sequence: Indices 99561 -- 100060
CCACAAGGTTGTGTGGGTGCGTTCCATCTCGTGCCGGGGCCCCACCTCACCCCACCGTGCGTCAA
ACTAACTAACTGGTTTGACAACATTGTTCTGGGTGGTTGTTTTATTGGTTCCATCTCGGGGCGGT
ACTTAGAGTCGCTAGCATAACGTGGGCTCCAGTATCAAGCAACACAATATTGATTGAAGAGCAGT
CGCTCCAGATCGCTCGGAGGATGGTGGTCGGCGGCTGATCGCAAGGGTGGGCGCCACGAGTGGTT
TCGGAACGCATTCTGAGGCCTGGAGGGTTGGTGCTTCCTCCTGGTATGGGAAGGTAGCCTCTAGC
AGCATCGGACGTGACCTTCCCCAAGGGTTGCCTATACGGTGTTGACCCACTCTATAAACGCTGGT
ACCTGTCACTCTGTTGTATATCCACTCTATAAACGCTGGTACCCTTACCGGTTCGCCTCAGTAGT
AGATGTCGCAGCAACAACCAGAGTTGCCCAGAGATGCCATCAAGT
Right flanking sequence: Indices 100107 -- 100606
AGTAGTTCTTCCGGTCCCAGCGGCACTTAACTCGGAACGATCAGCGGCTTCAAGCCCACAGCCGC
CCGGTCTGCTATCCGTCCTACCCCTAGTCACTGGATCCATGATGCACCTGCGATTAGTGGCACAT
GCCTGGTGTTAACGGTTCCTTGTATCAGAACAGCACCACTTCTACTTGACTGGCGAGTCAAGGTA
GAAGTGTCACGTTCGGCTTGATAATCAACACTTGTTAACTAGTCAATACAGTCTCCATGTTCGGT
ATGTTCTGTCTCGTCAAGAAGGGTGGGGTGCCAGATGTGGGGAAGGTGAACCGGTCTCTGGTATG
CTATCTCCGCAACCTACGTGTCCGCACATAACGGTTACACCTCTATCATGTCACGATCCATTGGT
TCCCAGCGTACCGTACAGAAGTGAAGTCGAAGTCGGGCGGAGGGAAACTCAGATGTCCAGTCGAG
GGAGGCCTTTCGGGTTAGCGTCCTGCTTACGGAAGCGCTTAGGTC
Found at i:109279 original size:18 final size:19
Alignment explanation
Indices: 109256--109299 Score: 81
Period size: 18 Copynumber: 2.4 Consensus size: 19
109246 TCCTACTCCA
109256 TCGACCTAGTCCTAGTA-C
1 TCGACCTAGTCCTAGTACC
109274 TCGACCTAGTCCTAGTACC
1 TCGACCTAGTCCTAGTACC
109293 TCGACCT
1 TCGACCT
109300 TCCCTGGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.20, C:0.36, G:0.16, T:0.27
Consensus pattern (19 bp):
TCGACCTAGTCCTAGTACC
Left flanking sequence: Indices 108756 -- 109255
TCTTTATGAGTCACTCACCTTGGTAGGAGAGCTTGCTCACAGTACGAGGTGAGGTGGAAGAAGTT
GCGGGGGTATGCGTGGGTGGAGGCTAAGCCTGGTCCGCATGTGCGGGGGTATGCGGGCTCCCTCC
AGAAACCCATCCGAAGGCTACACCCTGCTATACGCGGAACGTTATTGACGTACGGTGGGGGTTGC
TGGCTACTAGATGATGACCCCACAACACAACCATGATGATCCTAGTACAACATGCGAGCACCTCA
TATACGGTTCCGGGCCCTGCAACAGTATTGGGGTGGCCCTGCGACGAACAGAAGCCACAACCCAA
CGCCATCACCACAACCCGATTGGATCACCCACCACAACCCAACGAAGTACTTCGAGTTGGCCCGA
CGATCTAGGTGACCGCGGATACTCTTTCTTTCTGAAGGGCTGACGAGTACGGCGAGTACGGCTCC
TGCTCCTTCCTAGAGACTACGTAGAGACGCGCAACTCCTACTCCA
Right flanking sequence: Indices 109300 -- 109799
TCCCTGGGTTGCGGCGCGCAACTCCTACTCATGTTTCTCCTACCGCTTCCTACCGCGCGCTTCTT
CCAGTCACCCATCGAGTGGGAAGGCGCTTCTTCAACTCACCATCGAGTGGGAAGCAGTAGGAGCT
GTAGCGAGCTGCCTGACTCTACTGTTACGTGACGGGGGTCTACCCGTGGGAACACCCCTCCTCCG
GATGATCCACAGTGTGAGTGAAGTTACGGGGGCAACACCCCGAACAGCATGGTGTGGGTGTCCTT
TGTGAGTGAAGTTACGGGGGCAACACCCCGAAGTGCTTACCCCGTATCCCGAAGGGCCCGACCTC
ACCCGACCCTGCGCATTGGTGACCATATAGTATCATCGTTCCGCAAGGTTACGGATCACCAATGA
CCAGTCGAATTGCGAACATTGCAGTACGTCTCGTACTGGCGGGAACCCGTACATACGCCCCCCAC
CCCAATTCGACGTACGTGTCGATCTCAATCACTCTACATGACATG
Found at i:109411 original size:31 final size:32
Alignment explanation
Indices: 109356--109418 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 32
109346 TTCCTACCGC
* *
109356 GCGCTTCTTCCAGTCACCCATCGAGTGGGAAG
1 GCGCTTCTTCAACTCACCCATCGAGTGGGAAG
109388 GCGCTTCTTCAACTCA-CCATCGAGTGGGAAG
1 GCGCTTCTTCAACTCACCCATCGAGTGGGAAG
109419 CAGTAGGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (32 bp):
GCGCTTCTTCAACTCACCCATCGAGTGGGAAG
Left flanking sequence: Indices 108856 -- 109355
CGCATGTGCGGGGGTATGCGGGCTCCCTCCAGAAACCCATCCGAAGGCTACACCCTGCTATACGC
GGAACGTTATTGACGTACGGTGGGGGTTGCTGGCTACTAGATGATGACCCCACAACACAACCATG
ATGATCCTAGTACAACATGCGAGCACCTCATATACGGTTCCGGGCCCTGCAACAGTATTGGGGTG
GCCCTGCGACGAACAGAAGCCACAACCCAACGCCATCACCACAACCCGATTGGATCACCCACCAC
AACCCAACGAAGTACTTCGAGTTGGCCCGACGATCTAGGTGACCGCGGATACTCTTTCTTTCTGA
AGGGCTGACGAGTACGGCGAGTACGGCTCCTGCTCCTTCCTAGAGACTACGTAGAGACGCGCAAC
TCCTACTCCATCGACCTAGTCCTAGTACTCGACCTAGTCCTAGTACCTCGACCTTCCCTGGGTTG
CGGCGCGCAACTCCTACTCATGTTTCTCCTACCGCTTCCTACCGC
Right flanking sequence: Indices 109419 -- 109918
CAGTAGGAGCTGTAGCGAGCTGCCTGACTCTACTGTTACGTGACGGGGGTCTACCCGTGGGAACA
CCCCTCCTCCGGATGATCCACAGTGTGAGTGAAGTTACGGGGGCAACACCCCGAACAGCATGGTG
TGGGTGTCCTTTGTGAGTGAAGTTACGGGGGCAACACCCCGAAGTGCTTACCCCGTATCCCGAAG
GGCCCGACCTCACCCGACCCTGCGCATTGGTGACCATATAGTATCATCGTTCCGCAAGGTTACGG
ATCACCAATGACCAGTCGAATTGCGAACATTGCAGTACGTCTCGTACTGGCGGGAACCCGTACAT
ACGCCCCCCACCCCAATTCGACGTACGTGTCGATCTCAATCACTCTACATGACATGGGGGTATTG
AGGGGTGTCGATCTCTCTCAATCACTCTACATGACATGGGGCGGAGCTTTTGTCCCACCATGGCC
TTGACCTTGAGCCTCAACCGAACGGCCCTCGTACCGTCCTACAGG
Found at i:111073 original size:9 final size:9
Alignment explanation
Indices: 111061--111085 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
111051 TCCTCGTCTT
111061 TATATATTA
1 TATATATTA
111070 TATATATTA
1 TATATATTA
111079 TATATAT
1 TATATAT
111086 GCAACCGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATATATTA
Left flanking sequence: Indices 110561 -- 111060
TCATAACGGTGCTTGCAGGCAAGAACCACAGGTTGACTGTTACCATATGCCGGGTAGGGGTGTCT
ATCATCCTTTAGGCGTACAAGTGACCCACCCGACTTGCTGGCTGAGCCCCGGCCTCTCTATATAA
CCGGGGACCGATCGGGGATGGATTCCGGACGCGGGGTTTCCATGGTCCAGTAGTGGGGTAGGTTC
GGACAGGACCCCCTCCCGACACACACACACGCTGCGGACCCCAACACCACAAGGCGGACCACCGT
TACCACGCCAACCAAGACTGCAGCGCACCCTACCCCGTACACCCGCATGCCCTCTTCAAACCCAC
GATGCAGGCCGCCACTGCTACGACGTCGATATATGTAGGCATACCCAGGCGGGGGCGTGTGATGG
AGCATCGCCCCGGTCGAATCGATATCACAACGGAAACGCCCATGTAGCCCCCACGCGTAGTCGGT
GGGGTTGGGTTTCGTACGGCGGTAGCACTTTGTCTTCCTCGTCTT
Right flanking sequence: Indices 111086 -- 111585
GCAACCGTACATAAGGGAACCAGGTAACTGAATTCATCGCCGCATGTCATGTTACTTGCGGTGCT
GGGGTCACGTCCGGCGAAATCCACCCCTTCACCCCGAACTTTCAACACAGAACTTTACCCCTTTC
GCCATTTCTTACAACCGATCTATATTGTCCAATGAGTGAAGCTTCCGTATGTGCCGATGAACAAT
GTTCCATATACGCAAGCAGTGGGTAGTTCAGGGTATGCAATGGTGCCCTACTCGACCTGACATTG
CCCATGCAGTGGGAGTCAATCTCGCCGCTATATGTGGTGGTTTCCAGGATGGGAACATTGGCAAG
CAGTGAAATGGATTATGAGATATGTTGTGGGAACACAGAATGAACTATGGTGCGGGAGGAGGTTC
GCCATTGGAGGTTGTTGGATATGTGGATCAGAAACCGCAGGATGTCGTGAAAGCTCAATGACGAT
AAGGTCCACGACTGGTGTAAACGTAAACGACTACGTAAACAACAA
Found at i:111593 original size:12 final size:12
Alignment explanation
Indices: 111560--111628 Score: 86
Period size: 12 Copynumber: 5.8 Consensus size: 12
111550 GACTGGTGTA
*
111560 AACGTAAACGAC
1 AACGTAAACAAC
*
111572 TACGTAAACAAC
1 AACGTAAACAAC
111584 AAC-TACAACAAC
1 AACGTA-AACAAC
*
111596 AACGTAGACAAC
1 AACGTAAACAAC
*
111608 AACGTAGACAAC
1 AACGTAAACAAC
111620 AACGTAAAC
1 AACGTAAAC
111629 TATCAACTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
11 2 0.04
12 46 0.92
13 2 0.04
ACGTcount: A:0.52, C:0.26, G:0.12, T:0.10
Consensus pattern (12 bp):
AACGTAAACAAC
Left flanking sequence: Indices 111060 -- 111559
TTATATATTATATATATTATATATATGCAACCGTACATAAGGGAACCAGGTAACTGAATTCATCG
CCGCATGTCATGTTACTTGCGGTGCTGGGGTCACGTCCGGCGAAATCCACCCCTTCACCCCGAAC
TTTCAACACAGAACTTTACCCCTTTCGCCATTTCTTACAACCGATCTATATTGTCCAATGAGTGA
AGCTTCCGTATGTGCCGATGAACAATGTTCCATATACGCAAGCAGTGGGTAGTTCAGGGTATGCA
ATGGTGCCCTACTCGACCTGACATTGCCCATGCAGTGGGAGTCAATCTCGCCGCTATATGTGGTG
GTTTCCAGGATGGGAACATTGGCAAGCAGTGAAATGGATTATGAGATATGTTGTGGGAACACAGA
ATGAACTATGGTGCGGGAGGAGGTTCGCCATTGGAGGTTGTTGGATATGTGGATCAGAAACCGCA
GGATGTCGTGAAAGCTCAATGACGATAAGGTCCACGACTGGTGTA
Right flanking sequence: Indices 111629 -- 112128
TATCAACTACAACTACATATGGCGGGCGGGCCCGGTGGGGTGACGGTTAGTGGTGGTGCAGTTAG
TTGGATTTCCAGGCTACAGGAGTTGCCTTGTCTTCAACCGAAGCTTCCGCATGTGGCACCACATA
CGACGGGAAAATGTTCTACACAACTACTCAGAAGCAGCCAAGTATCAGCAACCTACCTTACCCTT
ACTCCCCCGAACCCCGTGGGCGCTACCGCTCAGTATGGGCTGTTTGTTGCCTCCCGAATACGCGT
TGCGGAGGTTGCTGGACCCGCGAGTGAGCCATAAAAGCTACGTTGTGCATTGTGAGAGTGAGCCT
TAAAAGCTACGTTGTGCATTGTGATAACGCTCCCGTGCAATTCATCTTGCTTATGTACAGGCAGC
ATGCATATTTATCCAGCACCTTTCACATAGATGTGCGGTATGGGTATTCGGTTGGCCCTGGAACG
TGGAGACGAGAATATGTAGCTGGTGGATAAAGTTCATACGATCAG
Found at i:111606 original size:24 final size:24
Alignment explanation
Indices: 111573--111641 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 24
111563 GTAAACGACT
111573 ACGTAAACAACAACTACAACAACA
1 ACGTAAACAACAACTACAACAACA
* *
111597 ACGTAGACAACAACGTA-GACAACA
1 ACGTAAACAACAAC-TACAACAACA
*
111621 ACGTAAACTATCAACTACAAC
1 ACGTAAAC-AACAACTACAAC
111642 TACATATGGC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
24 28 0.76
25 9 0.24
ACGTcount: A:0.52, C:0.28, G:0.09, T:0.12
Consensus pattern (24 bp):
ACGTAAACAACAACTACAACAACA
Left flanking sequence: Indices 111073 -- 111572
ATATTATATATATGCAACCGTACATAAGGGAACCAGGTAACTGAATTCATCGCCGCATGTCATGT
TACTTGCGGTGCTGGGGTCACGTCCGGCGAAATCCACCCCTTCACCCCGAACTTTCAACACAGAA
CTTTACCCCTTTCGCCATTTCTTACAACCGATCTATATTGTCCAATGAGTGAAGCTTCCGTATGT
GCCGATGAACAATGTTCCATATACGCAAGCAGTGGGTAGTTCAGGGTATGCAATGGTGCCCTACT
CGACCTGACATTGCCCATGCAGTGGGAGTCAATCTCGCCGCTATATGTGGTGGTTTCCAGGATGG
GAACATTGGCAAGCAGTGAAATGGATTATGAGATATGTTGTGGGAACACAGAATGAACTATGGTG
CGGGAGGAGGTTCGCCATTGGAGGTTGTTGGATATGTGGATCAGAAACCGCAGGATGTCGTGAAA
GCTCAATGACGATAAGGTCCACGACTGGTGTAAACGTAAACGACT
Right flanking sequence: Indices 111642 -- 112141
TACATATGGCGGGCGGGCCCGGTGGGGTGACGGTTAGTGGTGGTGCAGTTAGTTGGATTTCCAGG
CTACAGGAGTTGCCTTGTCTTCAACCGAAGCTTCCGCATGTGGCACCACATACGACGGGAAAATG
TTCTACACAACTACTCAGAAGCAGCCAAGTATCAGCAACCTACCTTACCCTTACTCCCCCGAACC
CCGTGGGCGCTACCGCTCAGTATGGGCTGTTTGTTGCCTCCCGAATACGCGTTGCGGAGGTTGCT
GGACCCGCGAGTGAGCCATAAAAGCTACGTTGTGCATTGTGAGAGTGAGCCTTAAAAGCTACGTT
GTGCATTGTGATAACGCTCCCGTGCAATTCATCTTGCTTATGTACAGGCAGCATGCATATTTATC
CAGCACCTTTCACATAGATGTGCGGTATGGGTATTCGGTTGGCCCTGGAACGTGGAGACGAGAAT
ATGTAGCTGGTGGATAAAGTTCATACGATCAGTTATCTAGCAGAC
Found at i:111958 original size:34 final size:34
Alignment explanation
Indices: 111910--111977 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
111900 CTGGACCCGC
111910 GAGTGAGCCATAAAAGCTACGTTGTGCATTGTGA
1 GAGTGAGCCATAAAAGCTACGTTGTGCATTGTGA
*
111944 GAGTGAGCCTTAAAAGCTACGTTGTGCATTGTGA
1 GAGTGAGCCATAAAAGCTACGTTGTGCATTGTGA
111978 TAACGCTCCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (34 bp):
GAGTGAGCCATAAAAGCTACGTTGTGCATTGTGA
Left flanking sequence: Indices 111410 -- 111909
GCAGTGAAATGGATTATGAGATATGTTGTGGGAACACAGAATGAACTATGGTGCGGGAGGAGGTT
CGCCATTGGAGGTTGTTGGATATGTGGATCAGAAACCGCAGGATGTCGTGAAAGCTCAATGACGA
TAAGGTCCACGACTGGTGTAAACGTAAACGACTACGTAAACAACAACTACAACAACAACGTAGAC
AACAACGTAGACAACAACGTAAACTATCAACTACAACTACATATGGCGGGCGGGCCCGGTGGGGT
GACGGTTAGTGGTGGTGCAGTTAGTTGGATTTCCAGGCTACAGGAGTTGCCTTGTCTTCAACCGA
AGCTTCCGCATGTGGCACCACATACGACGGGAAAATGTTCTACACAACTACTCAGAAGCAGCCAA
GTATCAGCAACCTACCTTACCCTTACTCCCCCGAACCCCGTGGGCGCTACCGCTCAGTATGGGCT
GTTTGTTGCCTCCCGAATACGCGTTGCGGAGGTTGCTGGACCCGC
Right flanking sequence: Indices 111978 -- 112477
TAACGCTCCCGTGCAATTCATCTTGCTTATGTACAGGCAGCATGCATATTTATCCAGCACCTTTC
ACATAGATGTGCGGTATGGGTATTCGGTTGGCCCTGGAACGTGGAGACGAGAATATGTAGCTGGT
GGATAAAGTTCATACGATCAGTTATCTAGCAGACATGAGATGACCCCACACCACCTCAATAACTA
CTGTTGTTGTTCCTGCAGTAACGTGCGCATAAGTGGTGCGGGAGCATTATGGACTGGAGGTTTCG
TAGTCCGGAGGAATTGCAGAATGATGCAGAGTTATTGGAGCAACAGGGAGGGCTGCATTTCCCAG
CCTGGGAAGTGGGAGATTGTTGTATGTGAAGCCTTTTCAAACACGCTATCCTATGAAGCTTATGT
ACAGGGTTGTTGCCGTATTCGGGGGGCGGCGTCGTACGTAACGGGGGTAAGGTAGTTGTTGGGTT
CTGTCATTTGATTGCTTGCTATATGTACGCTGTAATGGAACATCA
Found at i:113480 original size:51 final size:48
Alignment explanation
Indices: 113404--113502 Score: 153
Period size: 51 Copynumber: 2.0 Consensus size: 48
113394 GTTACCCATT
*
113404 CTGTACTATGCTTCCTGCTTCCTAATGGTGCTGCTTCCGCACATGGTTCTA
1 CTGTACTAGGCTTCCTGCTTCCTAAT-G-G-TGCTTCCGCACATGGTTCTA
*
113455 CTGTACTAGGCTTCCTGCTTGCTAATGGTGCTTCCGCACATGGTTCTA
1 CTGTACTAGGCTTCCTGCTTCCTAATGGTGCTTCCGCACATGGTTCTA
113503 GTAACTGGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
48 20 0.43
49 1 0.02
50 1 0.02
51 24 0.52
ACGTcount: A:0.14, C:0.28, G:0.21, T:0.36
Consensus pattern (48 bp):
CTGTACTAGGCTTCCTGCTTCCTAATGGTGCTTCCGCACATGGTTCTA
Left flanking sequence: Indices 112904 -- 113403
CGGCTATACGGGTGAATATACGCCGATCGCTCTTGTTGGTTTGTTGTTCGCCACTTCTACAGTAA
CTGTGCCGTGTATCCATTCCTGTGTAAACGCACACACACAAGTCTGATTGATACCTTATGTAGTT
TGTTCGCCCAACGTGCTCGATGGTGATAAACCATACCTTTCCCTCTCAGTCTAGAGGCCTGGCTG
CAAGTCAGAAAACCGGTTAGTTAGTTAGTTATATGTGCGGTGGGGTGGGGTGGGGTGCATGTCTG
ACTAAGGTGCGCTGACCAACGTGCGCTATCAGTTAACACAGTAACTGGTTGGTCTGGTCTGGCCC
GCACATGGTTCTAGATAAATGGTTGCTCAAGGTGCCACGATACCAGATATGCTGACCGAACTGTG
GGGGTTGTACGGGGGTACCCCGAAGTTCTGTAGGGTGCTGACGGAACATAACCTGCTTCCGTACA
CTGCATTTACAAGACATGCTTCCTCAACCAGCCCCGTTACCCATT
Right flanking sequence: Indices 113503 -- 114002
GTAACTGGTTCAACTCAATGTACCTAGAGAAATGGTTCTGATCAATGTACCTGTACCTAGTAACT
GAGCACCCATCTAGCTACCCGCATCCGTGACAAACCTCTTCGAAATCCGTCAAGTATTCGTTATC
GAAAACTCGATGCGTGTATACCGCCCAGTATCGTATATGAAACAGGGGATAGTAATGGGAAACTC
GCAGTAACTACAAACGTGGCCTTCCTGCTGCCCTATACGCCCAAGGGGATCGGGGTGTCCGTCCT
TCGGGGGTGTGACCTGAAACCGAACCAACAGCTCCATCCCCTACACTGCCGTTCCCACTTCTTCC
CCCCCGTACAACCCCTTCGTACGTTCGTACGGCCATAGTGGTTTCGCACCCTGTCAACGTTAGTA
TCGCTCGAGCGACGTTGAATACGGTATTCAGTAGCCGTGGTTACTGGCCCCGGTTGCTCGCTCCT
TTATGATCGGCCGTAACCTACATAGATCGGGGTGGGGTGGGGTAT
Found at i:114634 original size:25 final size:25
Alignment explanation
Indices: 114606--114655 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
114596 GTTGATGATG
114606 CGGGGTCTGGGATGACCCTGATTGT
1 CGGGGTCTGGGATGACCCTGATTGT
*
114631 CGGGGTCTGGGATGACCCTGGTTGT
1 CGGGGTCTGGGATGACCCTGATTGT
114656 AAAGAGAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.10, C:0.20, G:0.42, T:0.28
Consensus pattern (25 bp):
CGGGGTCTGGGATGACCCTGATTGT
Left flanking sequence: Indices 114106 -- 114605
TTACGAACTAGATCAAAAGCCGAAGGTCGTAGAGAGCATGTTCACCAAGTAATCTCTCAGTACCA
TGTGCGAAGGCAATGTTGAAGTGTTCCTCATCGCGCATGTCCCGTCCTTGTGGAGTTTCGAGGGC
GATCTAGTGCTGCCGCACATATGAAGGTCTCTTAACCGTTACGTAAACGTCCAAACTGGGTAGGT
CCTTATGTCATCATGTGCGCGTTATCCGCCATTACGCCTACCGTTACTTGGGGTTGGGTTGGCAG
CTGACATAGAAGGTAACGAAGAGAAAGAACCTGTTAATGCCATGTTACCGCAAGCGTTACTACCC
ACGAGTCATAGGAACGAGCTCTATCCTCCTTTGCCATGATTCATATATGTGGGGTGAGGGTTCGG
TGGGTGTCGGCAAGAGACAAAAGTGTTCATCCCGGAGTCCTTGTAGCAAGTTGTTGTTGTTCTCG
TCTGGGGTGAAAACCAACAAGCGGACGGACATGCTGTTGATGATG
Right flanking sequence: Indices 114656 -- 115155
AAAGAGAAGGTACCTGCTTGGGGGGAGCTGTAGAACCAGTACAGCTCCTTGTTCCTTTCGCCTTC
CCTAGATACCCGGCTTCTTATGTATGGCACTTATGACCGTTCATCATTGATTTTGTAATAAACAG
CAATCTCTGTCCAACAACGCCAGCCAACAGCATCTCCAAGACAACCTGGGCCGTAAGTGATTCGT
AAGGTTGTTGAAGCTACGGGAAGCCTTGTGCCTTACGTAAACCCCGGGAGGGCCTACCCCAACAA
GTGCCGCCCTACGAGTACCTGTTCCGTAGAGCACGACCATCTGACAACCCCTTCGGGGCGGATGG
AAGCGGCACATATGGGCTCCCTCACCGTGGTGCAACCCTGACCAATCCCAGTACTCAGCCAGTAC
TCAGCCTATCTCGCATACCTACCCGCCCCACGGAATCCCCCACACCCATACCGGAATATCAAACA
CATCGTAGATGCTATCCGGCCTGCTGCCACCCGATACTACCGCAA
Found at i:115959 original size:55 final size:55
Alignment explanation
Indices: 115892--116001 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
115882 GTTGGTTATG
115892 CTCTTTATCCAGTGGGTAAGGATGTGTGTGGCCCACTCATGTTCCTTTCTCCCAC
1 CTCTTTATCCAGTGGGTAAGGATGTGTGTGGCCCACTCATGTTCCTTTCTCCCAC
115947 CTCTTTATCCAGTGGGTAAGGATGTGTGTGGCCCACTCATGTTCCTTTCTCCCAC
1 CTCTTTATCCAGTGGGTAAGGATGTGTGTGGCCCACTCATGTTCCTTTCTCCCAC
116002 TCAATCAGCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.15, C:0.29, G:0.22, T:0.35
Consensus pattern (55 bp):
CTCTTTATCCAGTGGGTAAGGATGTGTGTGGCCCACTCATGTTCCTTTCTCCCAC
Left flanking sequence: Indices 115392 -- 115891
GTTGCGTCAGGGGAAACCCGAGAGGGCTCCTGAACAACGCCGAGGGCCACATGCGTACGGATATG
CAGGGAATAATGGTTCGTACGGAAGCTTGAAAACCCACCCCTTCGGGGGCGAAATTCTGACGTAT
CAGGGTGGTGGGTGGGTGCGTTAGTGGCAGGTCAAGATTTACCCTACCCATCTCGTGAGCTACCC
CGTTTGGCTACGGCTACCCTTTATATATAGCGGCGCACGAATCAGCATCAGCGTCATCCATGCCT
TCGGCATCAGGACTGAGGCGCCCCACACGTTGCCACACCAGCGTGGCCTCTGCTCCAGATCAGCG
TACGAGGCAAGGAAGCTAGCTTCTCCACTGCCCATGTTCCATCAGCTCTGTCATCAACACCGTCG
ACAGACATGCACAGCCGTGGAACTCCGAGGTGACGTCGAGGTCAATCTCTCACGTGCGGTATGAA
TATGTAGCCAAGTAATGTTGGGGGTAACCCCAGATGTTGGTTATG
Right flanking sequence: Indices 116002 -- 116501
TCAATCAGCCATCTGAACCCCGCCACCGCCACCCCACCAATTAACGTAGTAGTAGTAGTAGTACG
CCGGCGCAAGGCAGTCAACCCTTTCTGTACACCGCCTTTTCCATGTCATCAGCTTCGCCCACACT
ACAAACTCACCTGCACGCCATTCCAGGAGCCCACATCATGGAACTATGTCATCATCTCATATCGC
CAGCATTGTATCATTATCCCAGAAAAGCAGTTGCATGGATATCGACTCATTCCGCACGCCAGGAT
AAGCAACAGTAAAGATCCAGTCGACAGATGACCAAGTGCCCAGTGTTGCTATGAGTGCGCGTTGG
AGTGGATGGAAGGCTGCTGTATGGATCCTGTTTCCTAATGCGCGGTCAACATGCGGTCTTTCATA
TGTTATGTATAACTCTACTCGCCCAGTGGAACAACTGAGTTATGCCGCGGTCACATACCCCACTG
ATGTGTTGTCTTATTTGTATATACGTGTTATATGGTTTGTGTGCG
Found at i:118820 original size:32 final size:32
Alignment explanation
Indices: 118779--118842 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
118769 AATAGTAGTA
118779 CTATTGACCTGGAGGTGTTGTTGGATATGTTG
1 CTATTGACCTGGAGGTGTTGTTGGATATGTTG
118811 CTATTGACCTGGAGGTGTTGTTGGATATGTTG
1 CTATTGACCTGGAGGTGTTGTTGGATATGTTG
118843 GGGGCACACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.16, C:0.09, G:0.34, T:0.41
Consensus pattern (32 bp):
CTATTGACCTGGAGGTGTTGTTGGATATGTTG
Left flanking sequence: Indices 118279 -- 118778
TTACCGATGACCCCGACACCGGATGGGAAAACCAGGCATCCACCCGAACCCGCTTCCACCGAACC
CTCTTTGACACAGTTCCCAACCACATGCCACAGCAGCAATCAAGGTTTATATGCCCCTCCAATGC
CGTACGCGTGTTTCGGTTCATGAGGTAGCGTTTTGTCTAACGTAACACAGGGAGGAGCGGTAGCA
TATGTACGGTCAAGAACTATGAACTAGTCGAATAGTTCTATAGGTGTCTATTATCAACAATGTAT
CAACCCGTACACTACCCCAGCCAACCCCGCCGCAACGATGTATCAACCCGTACACTACCCCAACC
CCGCGGAAGTGTGTCAACATACTAATGATGTAGATGACGACCCGGTCACCTGGGGGATAGCGCCG
GAGCAGGTAAGGGAAATTGCTTGGGCTAGGAAGGCCCCACCGCGGTTGTGCGGCTTAGGCAGCTC
AAAACCAGGAGCTGATTTTCATCCGCCCGCGCGTCAATAGTAGTA
Right flanking sequence: Indices 118843 -- 119342
GGGGCACACGAGGCTGGTGTACGGCTAACCACCAATACCCTTCCTTTATGCTGGGACTCATCTGG
ATGCGCCCCGTAACCTATGTACGCGTTATCATCTGCTAGCTCGTTATTCGAAAGTGGAATCACTT
CTAGAAACATAGCTTGAAAGGCGTCCAATAGAAAATGGACAAGCTGAACCGCACCATATCATATC
ATATGTATATGTACGGTACGCTCAGTTCAGAACTCAACACACTATAGACACCTTGTTTCTGATTT
ACCACCAGTTGGGAGTCCCCTGGGAATGCAACATAGCGAGATTCCGCCAGCCATATGTACGCGTA
TATAGAGGGAGGCCATGAGCGAGGGCTTCACAACCGCTGAGTTATTCGTATTCAGAACCCCCACC
CACGGAGGCCATGAGCGAGGGCTTCACCATCTAACCGCTGAGTTATTCGTATTCAGCAGCCCCAC
CCACTCCCACTGCGGGAGCTTTGAAGTACCTTATTCCATACGGAT
Found at i:119288 original size:66 final size:61
Alignment explanation
Indices: 119175--119301 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 61
119165 GTATATAGAG
119175 GGAGGCCATGAGCGAGGGCTTCACAACCGCTGAGTTATTCGTATTCAGAACCCCCACCCAC
1 GGAGGCCATGAGCGAGGGCTTCACAACCGCTGAGTTATTCGTATTCAGAACCCCCACCCAC
* *
119236 GGAGGCCATGAGCGAGGGCTTCACCATCTAACCGCTGAGTTATTCGTATTCAGCAGCCCCACCCA
1 GGAGGCCATGAGCGAGGGCTT---CA-C-AACCGCTGAGTTATTCGTATTCAGAACCCCCACCCA
119301 C
61 C
119302 TCCCACTGCG
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 21 0.36
64 2 0.03
65 1 0.02
66 35 0.59
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.19
Consensus pattern (61 bp):
GGAGGCCATGAGCGAGGGCTTCACAACCGCTGAGTTATTCGTATTCAGAACCCCCACCCAC
Left flanking sequence: Indices 118675 -- 119174
GTAAGGGAAATTGCTTGGGCTAGGAAGGCCCCACCGCGGTTGTGCGGCTTAGGCAGCTCAAAACC
AGGAGCTGATTTTCATCCGCCCGCGCGTCAATAGTAGTACTATTGACCTGGAGGTGTTGTTGGAT
ATGTTGCTATTGACCTGGAGGTGTTGTTGGATATGTTGGGGGCACACGAGGCTGGTGTACGGCTA
ACCACCAATACCCTTCCTTTATGCTGGGACTCATCTGGATGCGCCCCGTAACCTATGTACGCGTT
ATCATCTGCTAGCTCGTTATTCGAAAGTGGAATCACTTCTAGAAACATAGCTTGAAAGGCGTCCA
ATAGAAAATGGACAAGCTGAACCGCACCATATCATATCATATGTATATGTACGGTACGCTCAGTT
CAGAACTCAACACACTATAGACACCTTGTTTCTGATTTACCACCAGTTGGGAGTCCCCTGGGAAT
GCAACATAGCGAGATTCCGCCAGCCATATGTACGCGTATATAGAG
Right flanking sequence: Indices 119302 -- 119801
TCCCACTGCGGGAGCTTTGAAGTACCTTATTCCATACGGATTCTCTAACACAATTCCAGCACCAC
GATACGTGCACGCGAACAGCTCCGTGTTTGTGTTTGGAAGGCTCCAGACATTAGTTGCTGCAGGC
GTATATGGTGGGCCAGTCACGACCTTAGTCATCAGGAGCTCACATAGTCCACACGTGTTAGATAG
TTGCTCAACTACCAACAACTGTCCGTCTGTGCGAGTGATATATTATGCAGCATGTGCGGCTCACT
ATAGATCAATATCTGATTGGGTTGACAGTTTGACGCACGGTGGGGCACGGCAGCCACATGTGTGA
GGTTTCTGTGGCTATGTAACCCGTACAACGTTGGTTGCTTCTACAAGGTAACAAGCTATAGGCTT
ATGGAACGGTTGCCACCTGCCTCGTAACACAGCCGTGGGCGCGTGGTTCAGAAGCTATCTGAAGC
ACTGCGTTGGGAATTTGACCGACAATCCGTACCTTACTGAAGTCG
Found at i:120033 original size:15 final size:15
Alignment explanation
Indices: 120013--120044 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
120003 CAACTTCGTG
120013 ATCCGTGGGAGCAGC
1 ATCCGTGGGAGCAGC
120028 ATCCGTGGGAGCAGC
1 ATCCGTGGGAGCAGC
120043 AT
1 AT
120045 ATGAACGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.25, G:0.38, T:0.16
Consensus pattern (15 bp):
ATCCGTGGGAGCAGC
Left flanking sequence: Indices 119513 -- 120012
AACTGTCCGTCTGTGCGAGTGATATATTATGCAGCATGTGCGGCTCACTATAGATCAATATCTGA
TTGGGTTGACAGTTTGACGCACGGTGGGGCACGGCAGCCACATGTGTGAGGTTTCTGTGGCTATG
TAACCCGTACAACGTTGGTTGCTTCTACAAGGTAACAAGCTATAGGCTTATGGAACGGTTGCCAC
CTGCCTCGTAACACAGCCGTGGGCGCGTGGTTCAGAAGCTATCTGAAGCACTGCGTTGGGAATTT
GACCGACAATCCGTACCTTACTGAAGTCGTATATACGGGGTGGGTCAATATGCTTCTGACATATT
GACAATGGCATGATCGTTGACGAAGCTCCAGAGTCAACCAGGCTTTATATACGGTATTTACCTTA
CGTATGGATTGTCAGTGCTTATGGAGCTGCCGATTTGTCGGGGACAGCGATTATTATATTAAATA
TATTGACAATCAGGATCTGGAATGGTCGGCAACCCCAACTTCGTG
Right flanking sequence: Indices 120045 -- 120544
ATGAACGGGTAGCCCTTTGGTTACGTTACGTTGCTTTGAGCTCCATGACCCACTTCTGTATATTC
GTAGTTCAATTGATTACTACTACTACAACCAGAACTAGCACGGTGGGGTGCATGCTGACTAACGC
CAAGTAAGATCAGCAATATACAAGTACTAGAAACCTCCGTCAGGGACATTGTTGTGTCGGTACGG
ATCATCGTTACAGCCTTACTTAAGCTCGTAACCACTGGCGCATTCTGCTTCGCCTCTTCTGAAGC
GCATATCTGGTCGAGTAGGCTGGTGAGCGTTTCCGAACCCCCACCCACCCGGTACGAATTGCTTC
GCCGATTGCTAGGTTCAGGAATGTACGAGCGGTGGTCGCGAAGTAGCCTCTCTTGATCAAGTACA
GCGGGAGACTTGCTTCTTATGTAATGTACAGTATGGTACTCCACTAGCTGTATGACACTCATCGT
CCGAAGTTACGGGGTCCGGGTCACTTTCTTCGTTACTAAGAGGTC
Found at i:120612 original size:23 final size:23
Alignment explanation
Indices: 120582--120663 Score: 155
Period size: 23 Copynumber: 3.6 Consensus size: 23
120572 GGGCCTCGCT
120582 CGCATGGCAGAGTTGGTGGGCCC
1 CGCATGGCAGAGTTGGTGGGCCC
120605 CGCATGGCAGAGTTGGTGGGCCC
1 CGCATGGCAGAGTTGGTGGGCCC
*
120628 CGCATGGCAGAGTTGGTGGGCCT
1 CGCATGGCAGAGTTGGTGGGCCC
120651 CGCATGGCAGAGT
1 CGCATGGCAGAGT
120664 CCAACGCGGC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.15, C:0.24, G:0.43, T:0.18
Consensus pattern (23 bp):
CGCATGGCAGAGTTGGTGGGCCC
Left flanking sequence: Indices 120082 -- 120581
GAGCTCCATGACCCACTTCTGTATATTCGTAGTTCAATTGATTACTACTACTACAACCAGAACTA
GCACGGTGGGGTGCATGCTGACTAACGCCAAGTAAGATCAGCAATATACAAGTACTAGAAACCTC
CGTCAGGGACATTGTTGTGTCGGTACGGATCATCGTTACAGCCTTACTTAAGCTCGTAACCACTG
GCGCATTCTGCTTCGCCTCTTCTGAAGCGCATATCTGGTCGAGTAGGCTGGTGAGCGTTTCCGAA
CCCCCACCCACCCGGTACGAATTGCTTCGCCGATTGCTAGGTTCAGGAATGTACGAGCGGTGGTC
GCGAAGTAGCCTCTCTTGATCAAGTACAGCGGGAGACTTGCTTCTTATGTAATGTACAGTATGGT
ACTCCACTAGCTGTATGACACTCATCGTCCGAAGTTACGGGGTCCGGGTCACTTTCTTCGTTACT
AAGAGGTCGTGATCATACGTGATATAATATATGGTGGGCCTCGCT
Right flanking sequence: Indices 120664 -- 121163
CCAACGCGGCTGGAAAGCGTAGGATCCATCAGAAACATGTGACCGGCCTCACCTCACCTCACCTC
ACCGTTACGAAATTAGATAGAAACGAAACCTCTCCTCAACCTCTCCTCAACCTCTCCTCTAAAGT
AAGGGTAAGGTAAGGGGGCGACCCATTGGAGTTATTGAATTTACCTGGGTGCTCCGGCTAGCCTC
ACCTCACCTCACCTCACCGACGATTAAAGATAGAAACGAAACCTCTCTCTCTATATAAGGGCTTT
TCCAACACAACAACATCATAAAGAACCTCATCTCCAAAAGGCTTATTCAAGCTTGATCAGCTTCA
TCCGGAGTGCCTTCTTCAGACTGTGTTCAAGTTCCCACAGCGGTGTAGAAGCATCTGGCTGTGGG
AGAGCTCGTAGAGGCCATGCGTATGTGTTGGTCTGGCCGTCGACGCAGGTACAGCTAGCTTGCCG
CCTTGCCGCGTTATCGTAATAGGGTACCCAGTTTCACTACAAGGC
Found at i:120769 original size:11 final size:11
Alignment explanation
Indices: 120755--120787 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
120745 ATAGAAACGA
120755 AACCTCTCCTC
1 AACCTCTCCTC
120766 AACCTCTCCTC
1 AACCTCTCCTC
120777 AACCTCTCCTC
1 AACCTCTCCTC
120788 TAAAGTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.55, G:0.00, T:0.27
Consensus pattern (11 bp):
AACCTCTCCTC
Left flanking sequence: Indices 120255 -- 120754
TTACTTAAGCTCGTAACCACTGGCGCATTCTGCTTCGCCTCTTCTGAAGCGCATATCTGGTCGAG
TAGGCTGGTGAGCGTTTCCGAACCCCCACCCACCCGGTACGAATTGCTTCGCCGATTGCTAGGTT
CAGGAATGTACGAGCGGTGGTCGCGAAGTAGCCTCTCTTGATCAAGTACAGCGGGAGACTTGCTT
CTTATGTAATGTACAGTATGGTACTCCACTAGCTGTATGACACTCATCGTCCGAAGTTACGGGGT
CCGGGTCACTTTCTTCGTTACTAAGAGGTCGTGATCATACGTGATATAATATATGGTGGGCCTCG
CTCGCATGGCAGAGTTGGTGGGCCCCGCATGGCAGAGTTGGTGGGCCCCGCATGGCAGAGTTGGT
GGGCCTCGCATGGCAGAGTCCAACGCGGCTGGAAAGCGTAGGATCCATCAGAAACATGTGACCGG
CCTCACCTCACCTCACCTCACCGTTACGAAATTAGATAGAAACGA
Right flanking sequence: Indices 120788 -- 121287
TAAAGTAAGGGTAAGGTAAGGGGGCGACCCATTGGAGTTATTGAATTTACCTGGGTGCTCCGGCT
AGCCTCACCTCACCTCACCTCACCGACGATTAAAGATAGAAACGAAACCTCTCTCTCTATATAAG
GGCTTTTCCAACACAACAACATCATAAAGAACCTCATCTCCAAAAGGCTTATTCAAGCTTGATCA
GCTTCATCCGGAGTGCCTTCTTCAGACTGTGTTCAAGTTCCCACAGCGGTGTAGAAGCATCTGGC
TGTGGGAGAGCTCGTAGAGGCCATGCGTATGTGTTGGTCTGGCCGTCGACGCAGGTACAGCTAGC
TTGCCGCCTTGCCGCGTTATCGTAATAGGGTACCCAGTTTCACTACAAGGCCCAGAGTAAGATCA
TTGAGGGCCTTGGCGCGTTCTTCTGACCCAGATAGCGGTTTCTAGAGCCCACTACTCCTCAGGTA
TGTCTCAATGATCACAGCATATATAAAATAACTTGTGCACGGGGC
Found at i:122491 original size:23 final size:23
Alignment explanation
Indices: 122461--122504 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
122451 CCAGCGGATA
122461 AGTAGTCGCTTGTAGTTCCAGTC
1 AGTAGTCGCTTGTAGTTCCAGTC
122484 AGTAGTCGCTTGTAGTTCCAG
1 AGTAGTCGCTTGTAGTTCCAG
122505 GCCAGCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.34
Consensus pattern (23 bp):
AGTAGTCGCTTGTAGTTCCAGTC
Left flanking sequence: Indices 121961 -- 122460
CCGTAATCGAAGTGGAAGCATATAGGTCTACAATCAAGGTTCCTCTAGGCTCTTCGAGATAGTCG
TCGTCAGAGGATGACATTCAAGCCCCTCCTATACGCGCCACGGCTAACTGTGGGTCATAGGATCC
TGTGCTTCGCTTTACGCGCCATGGTAACGGCTAACGGCTGGTCTATGGTTCAGCCAAGGCCAAGA
TACCTCCGCACAGCGCTGTGTACAACTAGTAACATGGCTTGTGTTACCACCCGTATATGGGGTCG
ATTTGAATGAAGAGGCACCCGTATATGGGGTCGATTTGAAGAGGGCCTTGGCGGTGTAGCTCGCC
TTTCCTGTTCGCCTCCGGGGCTACCGGCACACCGTCATGAGGCACAGAGGCCCTTCCCTTATATA
CGCCACAAGAACGATCTCATGTCAGGGTGGAAAACACCAAGGAGGACACAGGCAGCCGTATCGTC
ATGTGCAATCCAGCCTCAGTTACATACTTGGCCGACCAGCGGATA
Right flanking sequence: Indices 122505 -- 123004
GCCAGCTTTAACCGGTACTTCCGACAGGGATACTGTTGCGGCCTAAGTTCAGGCCCGACTCACCT
TCCTCCACAACCTCCCGACTCACCACCTTCCTCTACAACCTCCTGACGACTGGCGAGTCCGTTAC
AAGCGTTTACCCGACCCGAAGTCCACGGCGCGTAAACACCGGTCGTAAGCGTAACGAAGATACAT
ATGAGATTCATGCTTCTTCTCTACAGAATCCAATACGAAGTTCATACGTATGGGATAAATCGCGG
GTAACTGGAACCACGTCACGTTCAACCTTACCAGAAACGGGTGGGTCTGGATTGGCGGGAGGGGC
GGGGAAAGCCGGTGGGTCTGGAGTGCGGCACGTTCCCGCTTCTATATAAACTCTCTCGACTACAG
GGCTCCGGGACTTGGTTTACAGTGTTCCCAGTACTCGATAAGTGCGAGTCTCCCTGCCACCCACT
ACTTGTTGGTTGTTAGAACGCATTGCTTACACAGGGTAGTTCCAC
Found at i:122592 original size:25 final size:26
Alignment explanation
Indices: 122558--122612 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 26
122548 TAAGTTCAGG
122558 CCCGACT-CACCTTCCTCCACAACCT
1 CCCGACTCCACCTTCCTCCACAACCT
*
122583 CCCGACTCACCACCTTCCTCTACAACCT
1 CCCGACT--CCACCTTCCTCCACAACCT
122611 CC
1 CC
122613 TGACGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
28 19 0.73
ACGTcount: A:0.20, C:0.56, G:0.04, T:0.20
Consensus pattern (26 bp):
CCCGACTCCACCTTCCTCCACAACCT
Left flanking sequence: Indices 122058 -- 122557
ACGCGCCACGGCTAACTGTGGGTCATAGGATCCTGTGCTTCGCTTTACGCGCCATGGTAACGGCT
AACGGCTGGTCTATGGTTCAGCCAAGGCCAAGATACCTCCGCACAGCGCTGTGTACAACTAGTAA
CATGGCTTGTGTTACCACCCGTATATGGGGTCGATTTGAATGAAGAGGCACCCGTATATGGGGTC
GATTTGAAGAGGGCCTTGGCGGTGTAGCTCGCCTTTCCTGTTCGCCTCCGGGGCTACCGGCACAC
CGTCATGAGGCACAGAGGCCCTTCCCTTATATACGCCACAAGAACGATCTCATGTCAGGGTGGAA
AACACCAAGGAGGACACAGGCAGCCGTATCGTCATGTGCAATCCAGCCTCAGTTACATACTTGGC
CGACCAGCGGATAAGTAGTCGCTTGTAGTTCCAGTCAGTAGTCGCTTGTAGTTCCAGGCCAGCTT
TAACCGGTACTTCCGACAGGGATACTGTTGCGGCCTAAGTTCAGG
Right flanking sequence: Indices 122613 -- 123112
TGACGACTGGCGAGTCCGTTACAAGCGTTTACCCGACCCGAAGTCCACGGCGCGTAAACACCGGT
CGTAAGCGTAACGAAGATACATATGAGATTCATGCTTCTTCTCTACAGAATCCAATACGAAGTTC
ATACGTATGGGATAAATCGCGGGTAACTGGAACCACGTCACGTTCAACCTTACCAGAAACGGGTG
GGTCTGGATTGGCGGGAGGGGCGGGGAAAGCCGGTGGGTCTGGAGTGCGGCACGTTCCCGCTTCT
ATATAAACTCTCTCGACTACAGGGCTCCGGGACTTGGTTTACAGTGTTCCCAGTACTCGATAAGT
GCGAGTCTCCCTGCCACCCACTACTTGTTGGTTGTTAGAACGCATTGCTTACACAGGGTAGTTCC
ACGCTTACCTCACCCAGAGCGTGGAAGAACAGTCACGTCAGCACCATAGCCCTTCAGGATCTCGG
AACAATGGTCGCCACAGTTCCCACAGCTACCGGGTTCGTACTTCT
Found at i:124970 original size:24 final size:24
Alignment explanation
Indices: 124938--124985 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
124928 ACCCTACAGG
*
124938 TCGTCACTTACTGCGCCGCCCGCT
1 TCGTCACTTACTGCGACGCCCGCT
124962 TCGTCACTTACTGCGACGCCCGCT
1 TCGTCACTTACTGCGACGCCCGCT
124986 ATAGTTGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.10, C:0.44, G:0.21, T:0.25
Consensus pattern (24 bp):
TCGTCACTTACTGCGACGCCCGCT
Left flanking sequence: Indices 124438 -- 124937
CGAGCCACTCTACCCACACCCTTCCCCCCGGATATACGCCACCTCCAGGCGATCTAACACTTCAC
GCCTCTGACGAATAGTTCCACCGTGCAACAAGTCAGTCGCCTTCATACCGGAAGACCGTATATAA
CGCCTTCAAAACCACATTCACCCTGCCGCCCACCGTATGTATATAGTCACCCTGCCGCCCACCGT
ATATAGGGATAGTGGTGCCGGGTTTGACATATCCAAAAGCAGCCTAGAACGCCCCGCCGAGGACT
ACATGAGGTGAGGCAACAATGTCGTGGGTCTGGACCCGGTGCAATATAACTGCCGGGATTCAGAC
CATATTGTTATGGTACCTTCATGTAGCTAGCTGTCGCTAGATGAGTTGCAGCCTCCGAAACGCGC
TAGATGCGATGCAACCGATGATGCGATAGCGCTAGATGCAATGCACGATCGCGGTTTCAGTTGTT
CCTATCTGACTTGGGGTAACCATACAACGTTCCCCACCCTACAGG
Right flanking sequence: Indices 124986 -- 125485
ATAGTTGTGTCAGCCTGCGGCTTCCTCTTCATGTTGTACGGTAGAAAGCATATAGTTTATAGACT
AGTTAGTTGGTTCGTTCCTACCGTATATAACAATCCGCACCACATACAATCCGCACCACATTATA
TACGTATAGAAGTGTGGGCCCCTTCACGCAACCATATGGCGGGGTTAGTTAGTTTGACGCCGGTG
GGGTGGGGCCCAACACAGCTAGTTGAAACCAACAACGATAAATCGGATTCAACATACTATTCCTA
GTAGACCTCAACATTACGGGGATGATTTGAAAGCCAAGCGTTTTGGATGATGCGCTAGACAGGCT
CTGTACCCGGGATGCCATAGGTTCACCACCACCAACGTGCATGATTGTGCACGGTTGTACGTTTG
TTGAGCTTGAAAGCGTGCAGGCCGACACACATCACCACCCACCCCACCTTACATAACTGTAACGG
CCCACCTTACATAACTGTTGCGGTTGCGGTTGCGCCCCCCATATC
Found at i:125101 original size:16 final size:16
Alignment explanation
Indices: 125080--125111 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
125070 ACCGTATATA
125080 ACAATCCGCACCACAT
1 ACAATCCGCACCACAT
125096 ACAATCCGCACCACAT
1 ACAATCCGCACCACAT
125112 TATATACGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.44, G:0.06, T:0.12
Consensus pattern (16 bp):
ACAATCCGCACCACAT
Left flanking sequence: Indices 124580 -- 125079
CACATTCACCCTGCCGCCCACCGTATGTATATAGTCACCCTGCCGCCCACCGTATATAGGGATAG
TGGTGCCGGGTTTGACATATCCAAAAGCAGCCTAGAACGCCCCGCCGAGGACTACATGAGGTGAG
GCAACAATGTCGTGGGTCTGGACCCGGTGCAATATAACTGCCGGGATTCAGACCATATTGTTATG
GTACCTTCATGTAGCTAGCTGTCGCTAGATGAGTTGCAGCCTCCGAAACGCGCTAGATGCGATGC
AACCGATGATGCGATAGCGCTAGATGCAATGCACGATCGCGGTTTCAGTTGTTCCTATCTGACTT
GGGGTAACCATACAACGTTCCCCACCCTACAGGTCGTCACTTACTGCGCCGCCCGCTTCGTCACT
TACTGCGACGCCCGCTATAGTTGTGTCAGCCTGCGGCTTCCTCTTCATGTTGTACGGTAGAAAGC
ATATAGTTTATAGACTAGTTAGTTGGTTCGTTCCTACCGTATATA
Right flanking sequence: Indices 125112 -- 125611
TATATACGTATAGAAGTGTGGGCCCCTTCACGCAACCATATGGCGGGGTTAGTTAGTTTGACGCC
GGTGGGGTGGGGCCCAACACAGCTAGTTGAAACCAACAACGATAAATCGGATTCAACATACTATT
CCTAGTAGACCTCAACATTACGGGGATGATTTGAAAGCCAAGCGTTTTGGATGATGCGCTAGACA
GGCTCTGTACCCGGGATGCCATAGGTTCACCACCACCAACGTGCATGATTGTGCACGGTTGTACG
TTTGTTGAGCTTGAAAGCGTGCAGGCCGACACACATCACCACCCACCCCACCTTACATAACTGTA
ACGGCCCACCTTACATAACTGTTGCGGTTGCGGTTGCGCCCCCCATATCATATACCCTTGCCGCC
GGCCGCCGTATAGAGGCTCGTTCGAGTCCCTGTTGGGTCTACTAAAGCAAAGTCATCCATGTTAT
GTAAGGTGGGCGTTATCCCGGGATCAATGTATGAGATGAACACCA
Found at i:126790 original size:13 final size:13
Alignment explanation
Indices: 126772--126796 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
126762 GGCGTATATA
126772 GTACGGTACGGTG
1 GTACGGTACGGTG
126785 GTACGGTACGGT
1 GTACGGTACGGT
126797 CAAAACCAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24
Consensus pattern (13 bp):
GTACGGTACGGTG
Left flanking sequence: Indices 126272 -- 126771
GGCACAATGTCGTGGACACAACTGATGCGCACACTAAGCCCAGGTTGTAGATGCGGGCGATCCGG
GCTATGGACAATACAAGGTTTCCCACCAACTGCGAACAACTCAAGGCAGCGGAGCACCAAGGGGA
AGCAATTACGCTTGTCCATAAAGCGCATCGAAGACAGTCTCCACCTGGCTGCATCATAGCTGGTT
GTGTTGCGTAACAGGGCTTATGTTATTTCATACATCAGATGACCCCATGCGCCATGTACCAGAAA
GCACCGCATCAATGGCTAGCATATTGCGTGCGCCAGGATGTGGCACCGGGTCTATATGGCCTATA
CTATATGGTGGGTGGGGGTTTTCTGCCACAGTTGGGAGTTGGGGAATGCCTCCGTGTTGAGCCCT
TTAGACAGCGACTTCCAGACCGCAGGCAGGGGTGGGTGGAAGAAGAGGTGTCTATCTTCTGTGGA
TTGCCCTACTGGAAGGTAAGAACGCAACATGGCGTGGCGTATATA
Right flanking sequence: Indices 126797 -- 127296
CAAAACCAACGACGCAAGGAACATTGTGAAACATACCTGTTCTAACAAAGGATGGCTTGTGTGCT
CTACGGGATTAGATGTATACTGGGCCACCCCAAGAAACTGGTGGATCAAAGCCCCGGGTACACTT
TGTCACGTGAAGAGCAGCATCAGCTATGCAAGTTGTTGCTACATGGTTCTGTTCCAGATGGGGCT
ACTCGTGTTTCCTAGCCCATGTGGATATGAAGGATTTGAAGATCACAGGTCGCCGTCTGCCATGA
GCACCACATACGTAAGCAACAACTGCTTACCCTGGGTGTTCCCACGCACATTGCCAACAGCAGGT
TAGCGGCGCGTTACTGAAGCATAACGGTTTATGACGCCAGATCTGTCGGGTTACCCTAGATCCCC
AAGCAACCAGTACGTAAGCAACAGGTGCGCCACACAAAGTGCATGTATTGATAATAGATTGACGC
CGTCTATATATGACATAATGATGCATTTGCCAATACATCTAGTCA
Found at i:128575 original size:21 final size:21
Alignment explanation
Indices: 128550--128613 Score: 121
Period size: 21 Copynumber: 3.1 Consensus size: 21
128540 TCGTTATATG
128550 ACGGGCGGGACTCGCTTCGCT
1 ACGGGCGGGACTCGCTTCGCT
128571 ACGGGCGGGACTCGCTTCGCT
1 ACGGGCGGGACTCGCTTCGCT
128592 ACGGGCGGGACTCGCTT-GCT
1 ACGGGCGGGACTCGCTTCGCT
128612 AC
1 AC
128614 CATAATGACC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
20 5 0.12
21 38 0.88
ACGTcount: A:0.11, C:0.33, G:0.38, T:0.19
Consensus pattern (21 bp):
ACGGGCGGGACTCGCTTCGCT
Left flanking sequence: Indices 128050 -- 128549
TTCGTTCCATGATGCGCAATGAGACGAGACGAACTTATTTGTATGACATGTTCACGTATGTGCGG
AGATAGAGAAACTAGTGTGCGAGCGGTAACACCAATCGATCTTTCCAGTCCATGGAAAACCCAGT
CAGACACTCACAAACAAGCTTCAGACCCCGACCACCCACCCCACAGAAGTTCGCGCCCCCGAAAC
CACCGTAAACAGCACAGCGTAGCGTGCTTTGAGCGGAGCGTTTATGAGCGAGCGTAGCCTTGACG
GAGCGTCGCGTAGCGGACGGAGGGCCGTAGCGTAGTTGTAGCGAAGGGGCGGGCACCACCATACT
AATAGTACGTAGTTAGGTTTACCAACAACACGTATACCCACAACCAGTTAGATACATTCTGAACC
TCGTGTTGGGATGATGATTACCAAGAACCAGCGTCAACCACTGAACCTCCATAAAACACCAGCAG
CCTCTGCCGCCTACGCAATCGACTCTCGGGAATATTCGTTATATG
Right flanking sequence: Indices 128614 -- 129113
CATAATGACCCATATACGCCAGCCGCCATATATACGCCTAGTGCACGGTTTCGTTTCGCCGATAA
ACGCCCCACCAGGTGTCACTAGCCACGAACGACCCTCGAACCCCTGTATACGGCGCATGTTGGCC
CCAGCACGAACTACGCCACTGGTTGAGTGAACACTTGTTCCCTACGGTTCACGGCCCCCGCAGCA
TAACCGTATAGTTGGGTTGTGCTACCCACGTTCCGGACTCCGCCTACCACACCTCGGTTCACCCA
CGGCAGAATGGAAGCGCCCACCGTACGTCAATAACTGGACGCCACCCCCTGCCCCCGAAAGTGGC
GCTCTGAACGGGTTACCCGCTGCAGCTACGGGAGCGCCGGTTACCCGACACAATTGTTCCACACT
ACCAACCTTCTCCAACCACTCACTATACACCATCAACCACCCAACTCCAGAGCAACTTCCACCCC
CGCGAGACTTGCCCCACTGGCTCACGCCCTTAGAGGGCACCCCGG
Found at i:130202 original size:10 final size:10
Alignment explanation
Indices: 130187--130225 Score: 78
Period size: 10 Copynumber: 3.9 Consensus size: 10
130177 GACGTGTGAC
130187 GTGTTGTTAA
1 GTGTTGTTAA
130197 GTGTTGTTAA
1 GTGTTGTTAA
130207 GTGTTGTTAA
1 GTGTTGTTAA
130217 GTGTTGTTA
1 GTGTTGTTA
130226 TTGAGGTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (10 bp):
GTGTTGTTAA
Left flanking sequence: Indices 129687 -- 130186
CCAACGCGCACCTTTCCACTTCACTTACCGCATCACCGGGGCAACATCCCGCAGCTCTCCGAACA
ACACGGCGGAGCAGCACCGCTTCTGTAACTCTCCCGATAGTTGAGCCAGGATCTCATCCTCACTC
AGCCCACCCTCCCAAACGACGGACCGCACGCTTGCCGCGAATAATTGAACGACAAAGGTACTCCG
ACCAGTGGGTAGGGCGTCCATAGCTGAGTTATGTAGTGCGGAGCGGGAAACACCCCCAATACGCA
TGGGTTGGGTTGGGCCCAATACGGGGGCTTAAACTCGCATCTTTGTTTTCGACTGGCAGATACAG
CACACCTGGCTCGGCCACCGAGTCTATCAACTCATCCGCCGCCACCGTACCCCCCGGGCCTGCAC
CGAAGAGACACAGGCCCGACAGCAACATCAAAGCACGGGTACCCTTTACCCTATCGATCAGCACC
CACGAGGTAGTTCCGGCAGCGAACCGAGTTAAGGTGACGTGTGAC
Right flanking sequence: Indices 130226 -- 130725
TTGAGGTGGGGTGGGGTGGGGGCCCACGAATCGAAAGAAGATACTCACGCAGACAATCACGCCCA
GTGCCGCGCTTCAACATCAGTAGCCTTCAGTACCTTCGCCACCAGTGCGGCACACCCAGATAAGT
GCTGCTGCTTTTCCAGTTACTAGCACAACCTCCTCACGTAACTGGAATACCGTAATTCGGGAGCG
AACCTCAGACAGGATTTCCGATGGCGAGCTACTCCTACGAGACACGTGCGACAACGGTACTTTTC
CAGATACTTGGCGAATGCCCCGATCGGCATCGTAGCCACCGGACAACCCCTACGCAGCCGCCGTT
CATATAACAGCCCTTTAGACCGCCTCCCGGACCGCCCTCTACCACCACTTCCTCACGCGTTTCCA
GCCCTAGGTCGTCCTTCAGAAAAAGCTGCACGGGGCAGTACTCACCTTCCGCCTCTCCCACGTAT
ATATCATCGGCATAACGACAATATGGTTCGCGCGACAGCCGAGCC
Found at i:131287 original size:43 final size:43
Alignment explanation
Indices: 131226--131311 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
131216 CCAGTACCGT
*
131226 TTCTGGACGTGGCTGCTGGACGGGTATACGGGTGAGAGGGTGG
1 TTCTGGACGTGGCTGCTGGACGGGTATACGGGTAAGAGGGTGG
131269 TTCTGGACGTGGCTGCTGGACGGGTATACGGGTAAGAGGGTGG
1 TTCTGGACGTGGCTGCTGGACGGGTATACGGGTAAGAGGGTGG
131312 CGCGGGTTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.15, C:0.14, G:0.48, T:0.23
Consensus pattern (43 bp):
TTCTGGACGTGGCTGCTGGACGGGTATACGGGTAAGAGGGTGG
Left flanking sequence: Indices 130726 -- 131225
CAGATAAGCCCGTCAAATACAAGTAAACGCAGTTGGCGGTGATCTGAACCGATACGCTGCCCTCA
CCGCTTCCTGCTCCGACTAGTATATACGTGGGTGGGGTATGGTGCGGTTCATTTGTAAGGGACAC
GGGGTGTCTTCTCGGGATACCCCATATACGTGCAGGTCGTTCGCTCGTTCTATCGCGACCGGACA
ACGGCTTAGGTAACCAACGTGTTTATGTCATTAATTCAACGCCGTATAGTAGTTCTTATATTGAC
GTTCGAAAGAACAAAGGGTTGAGTGTGCCGGCGTCTTCCTCTACAGGAAGACAACACAAAGGGGG
CGGTAACGCCGTGCCTAGTAGCGGGCGGACAAGCTTAGGGGTATTCAACAGAAGGCCGGGGCGGA
CAAGTATGCTTAGGGGTATTCAACAGAAGGCCGTTTTCAGAATTCACCGGGCTACACACGGAAGG
CGCGTAGTCGCCGTCTAGTGAAGGGGATCCACTATCCAGTACCGT
Right flanking sequence: Indices 131312 -- 131811
CGCGGGTTGGCTTGTACAAGGTCCCCCCGGCACAACCCCCCGCCCCGGCGCCGCGGAGAGACGGT
CCAAACCTCGGTATAAGTACGCGCGGGCTTCCCCTAACGCGCACACGTACGTGCGCACATACACA
CGGGGAATAACATAGTGATTCTTCACGCGCGCGTCAGTAATACGTGTGTTACGCGAAGCGGGCTT
GAAGAGTTCATTCAACAATGTGGTCCCTAGGGGCCGGCTCTTTCAGTACATGTAACTCCTCAATA
TACAACAAAACCAGGCTGCGTTCCCAACAACCACTTGGTTCTGTACTACGTTCCCCCGTGCGGGC
GAACACAAGTAACGTAGTAGCCCTCCAGCCTAGGTTCCCCGCCCCACCCCACCTCAATAACAACA
CAATGTTTCCCGCCGCTTTCTTTCCCCGCGGCCCTCCGGCCCAGTACGCGGTTCCCCGGGTAACT
CCCAGTAACTACACGGTCCCCGCCGCTCTGGGTAAATGGGATGGG
Found at i:136234 original size:18 final size:18
Alignment explanation
Indices: 136211--136248 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
136201 ACACAATTCG
136211 GTACGGTACCTCACTCAA
1 GTACGGTACCTCACTCAA
*
136229 GTACGGTATCTCACTCAA
1 GTACGGTACCTCACTCAA
136247 GT
1 GT
136249 CGTGTAAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (18 bp):
GTACGGTACCTCACTCAA
Left flanking sequence: Indices 135711 -- 136210
TCAAACGTTACTAACCCGGCCCGCGCAACCGAGTTTGTCTCGACTTTTATGACCCGGTACCGGCA
GCGTTCATAGTGGTGTGATCGATCTCATACGTACCGAAGCGGTAGCGCCCAATCCAATGGCGTCT
ATGAGCGGTGGCGCCGTCGTCTACAGCTTGACATATCACAAGCATAGTGGGTGGTGTGTGGGAAT
AAACCAATACAATACAAGGAGGCGCCCATACGGTGAATCTATCAATATCAATTGACCAAGTGGAT
ATGGATAAGTAGAACTACATGAGGGGGATATGAACTACATAAGGGTAACCCCAGTACGGCAACTC
TGAGCTTCCGATCGATTGGGCGTGTACCGGGTTTCCAGCACTCAGAATGAAGGCAATAGTGAGGC
GGCCCGTCTGGATCGGATGCCCAAAACCCGCCTACTACGGTGCGGCCCACCTTACATAACTCCTG
ACACAATGAGGAACGGCACCCTCCCGAACAACATGACACAATTCG
Right flanking sequence: Indices 136249 -- 136748
CGTGTAAGGAATAGTGGTACCAACCCGAACTATAGATGACGGTCGACGGTAGGGGTCTATAGAGT
ACAGTACTTGGGGGCAATTCCATCGTACCGTACTGGGTAAGGTGAAGGTGCAGTACCACTCCACA
AATGCAGTGGCTTTTGGGCCTTTGTAGCTCCGCGGTCCCATAGGTTGGCACTCTAGAGACGACCA
TTGGTTACCTTGGCTGGCTGGCTGGAGCTATTGGAGTCCAAGTACTGTAGGCCCGTGGTTAGAGT
CTATGTAATAGGTAACCGTTTCTACCTCTTACCTTGTAAAAGCGTCTATTGAGGAAGTTCACTTA
GGCTATCGCGTTACGCCGTCAATATCAATCCCAACATAACAATCGGGAATTGGCCCCGTCTCCCA
TTCCCACAACGCGGCTCATCATGCTTATGCGCCACCCGTTCTGCGGCTCAATAGAAAAGATGCGG
TACGACACACCTGCCTGAGGTGCTTGCTTACACAGCCTGCGTACT
Found at i:140491 original size:33 final size:33
Alignment explanation
Indices: 140449--140514 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
140439 CGCGGATCCT
*
140449 ACTCTAGAAACAGAAAGACCTACATGGTTACGC
1 ACTCTAGAAACAGAAAGACCCACATGGTTACGC
140482 ACTCTAGAAACAGAAAGACCCACATGGTTACGC
1 ACTCTAGAAACAGAAAGACCCACATGGTTACGC
140515 CGGGCGTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.26, G:0.18, T:0.17
Consensus pattern (33 bp):
ACTCTAGAAACAGAAAGACCCACATGGTTACGC
Left flanking sequence: Indices 139949 -- 140448
TACATGGCATAGGTTGGCTCCAGCCCAGGTTCACCGCCATGGTTATCCACCGGCGTCATGTGACT
GGTCTTGTGATCGGGCGTACATACCGCTGGACAAACCTTGGACCAGGCGGACTACGCGGGCTTAG
TAGCAATGTCTTCGAAACAAGTCCAAGCAACATCACTTCAACTGAAGCACAAAGGGGATGGGAAA
AGGAGTTGTGGGATATTACCGAAGCTCTAGGTTATTGACTGTAGCTATAACACGTTGGCAGCGTA
CATGTGGGGGCGCTTGCGGGTAGCTATTTGTTCTTCGTAAGCATCCCTACGCCGACTGAGATTGA
TATGGCGAACTCGCGCGGTTTCGTTGACCTCTTGCTTGTTGATCTTGAGTACCTTTAGATAGGTC
AGAGGCGAATTGTGCAAACGCTTCTAGTTCTGCGAACTACTTACCCGCGTTTTCGTTCCTCAATA
AACCCGCTACCTGTTTCATTCAACATAATAATCGCCGCGGATCCT
Right flanking sequence: Indices 140515 -- 141014
CGGGCGTATCCCCGCGTTGAATAGATCAGAAGATATTCAGATTTGTCCGCCACTACATACGGATT
CTACTTATATACGGTTCCCGGCGTGGGAATAGTTGCTTCAACATCTCCAGCGTCTCATAACGTAT
ATTGGTAGAGCAGTAACGCTTCCTTCTCCCAACTGAGAGTTGTTGTAACGCTGCTCTTTCCATAG
ATCGGGACTGGAACTAGAACACATCTCCCGGATAAGCCTCACGGCCGGGTGGTCTTTGTGCATAG
GAGAGACATTTGTCGATAAGCTTGTGCCTGTAACGATAGATCATCATAAATAAAACATGTATGTT
GCCATACGCCACCGCCCCCACCGTGCGTCAAACTTGGATGGCAGGTAGCGTTTCGGCTAAAGCTG
CTCCTGTAGTTGAAGCGTAAGTATTGGTCAAGCCGCGGGGGAATCCGCATTTACGTAAACCGCAA
GTCTATTCCATTGCTAGCGTTCCCGGAACTACATAACTACCTGAG
Found at i:145981 original size:5 final size:5
Alignment explanation
Indices: 145971--145996 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
145961 TGGCTCACCG
145971 TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA T
145997 TGGCTTGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Left flanking sequence: Indices 145471 -- 145970
GTTCTTCAAACTGCTGACAATCGTAGGCGAAAGGTAGATATTCGGGAGGACCCCACCCCTTTGAT
CGACCAACGCGCCACCATGGCCAGTGTCACTCTAGGGACTTTCGCAGCGATCATTCGTCCATATG
GCGTGCCGGTTCAGCTCAAGTAACTTCCCACCGACCAACACCGTATCCGAAACACATCGCATCCA
GAGGTTGAGGAGAGCGCTTACGAACTAGTGACCTTGCCCTGGGAGCCTTTCCACTCTCATACGTC
ATAGGTAAAAGCAGACCATAGGGTTTATGTCTGAGTGCTTATCCCACAACGATGACGTAGTTCTT
ACTGCCTGGAAGGCCCAAGCGGGGTGAACTTCGCTATCAACCGCAACGGGATCAACGGGAGCTTA
GAGCAATAGACAGAAAGCTGCTTCGTTTCTACGGGTATGCGCCGTATTCAGATATCACTATGCAA
TCAAGTAGATGGACTGTATCGTATTGTGCACCATCTGGCTCACCG
Right flanking sequence: Indices 145997 -- 146496
TGGCTTGGCTGGCGGGGGCCCGAGCTCCACTAATGAAGCCTTGGGGTTGTACGTAACTAACAGCG
TTTATTCGAACTTGTATGGATATGGTGGATATTGCGGCATGTCTAGTTACGATCAGTTACCATAT
ACAGAACAATAACTAGTTACCAGCCAGACTCTATTCGTAAGTATCGTTCTAGACGAACAGTCTTC
AATAGGGAAACAACGCTATTGGTATTCCGCAAGTAAGAGATCAGTATCGATATAGCACGCCTCAC
TACCGTGGGATCACCTCAGCGATTTTCACACCATGTAACCATTCGCTCCCAGAAGCCACCCAACT
GTTTATGAACACGCTCGGTGCCTAGGGAGCACAAGGTCTCAAGTCGATGATTCATCGCTAACTGT
CTACCGATCTCATATCCGTGCTCATCACTGGATTCAAACCGTTACTTGGTTGTTATGGCAAGCTT
GTTTTGTGTTATGTACTGTTGGAGCAGACTTATCTGGAGTGGGTT
Found at i:152522 original size:26 final size:26
Alignment explanation
Indices: 152482--152531 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
152472 CAGGCTTTCC
*
152482 ATTGGCCATCTAACCCCAACCCCGGT
1 ATTGGCCATCGAACCCCAACCCCGGT
*
152508 ATTGGCCATCGAACCCCGACCCCG
1 ATTGGCCATCGAACCCCAACCCCG
152532 CATCCAACGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.44, G:0.18, T:0.16
Consensus pattern (26 bp):
ATTGGCCATCGAACCCCAACCCCGGT
Left flanking sequence: Indices 151982 -- 152481
CCACTTGCATGACCGTACGTCAATAACCGCCACTGAGCGGACTCATATTCCAACTTTCATATCTG
GTTGCTCAGGACCCGCCATTGGAACACAAGCTGTGGCAGTTTAGTCGACCTTGGATGGCTACTGT
GCCTCCACGGTGTGGCAGTTTAGTCGACCTTGTTAACTTGGCGTTCAGGTGGTGGTTTACAGTGC
GGTAGTCGTCCACTTGGGTGGTTCTTGAGTAAGCGTTCCTGTTGGGTGGGCGGTGGGTTAGCAGC
CAGCATTCCACGGTGGGGTGGGGTGTTGGTGGTGTTTCGGAACCATTCTGCCTTTGCGCCTTCAG
GTGTTATATGTAGTAACCATCTTCAAACACTTGGCCCGCGCACGTATCAAGGCCCAGCTCGAGCC
CCCTGCTTTCGTGTAAACAGGTAAGTAGTGGAGTGCCATACATCTGCTTGTAGGGTAACTCGCGA
TACATACGGTTCCAATCCAATCTCACCCGTACATACAGGCTTTCC
Right flanking sequence: Indices 152532 -- 153031
CATCCAACGGGTTTCCCGGTATTGGCCTACGACACCCCACCCCCGCATCCAACGGGTTTATCTGC
ATCCAACATGTGGGCGAAAGAGGATATAAAGTACTTTTTATTAACTATATACGAGTATCAGGAGC
GCCTATTACGTGACGCCAACAAGCCAACAAGGGGGGTTGAACAACGGTTCGCTGGTTGGTGGGGG
AACGAGTGACGTTTATATACTTATATTAGATGCTTATATTGTTAGACGAAAACAGGGGTGGGGAT
GAAATCAAATATCCAAGTTATTAGATGGAGCCGACAGCCAAGGTGGGGACATAACCGACCCCTTC
CCTCTACCCAACCCCACGAATCACAGTTACGACCCCGCTACTGAGCTGGTTGTTTTCGTGTTCCG
GTTCACCCAACCCCTGACCTTCGGTGCGCTGGGGTGGGGTCAAGTTATTACCCCTTCCCCTGGCA
GCCCGGTCTAAGCTAACCCCCGGCACGTGCTGCATACCCCCACCG
Found at i:152574 original size:44 final size:45
Alignment explanation
Indices: 152502--152590 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
152492 TAACCCCAAC
152502 CCCGGTATTGGCCATCGAACCCCGA-CCCCGCATCCAACGGGTTT
1 CCCGGTATTGGCCATCGAACCCCGACCCCCGCATCCAACGGGTTT
152546 CCCGGTATTGGCC-TACGACACCCC-ACCCCCGCATCCAACGGGTTT
1 CCCGGTATTGGCCAT-CGA-ACCCCGACCCCCGCATCCAACGGGTTT
152591 ATCTGCATCC
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
43 1 0.02
44 17 0.40
45 24 0.57
ACGTcount: A:0.18, C:0.43, G:0.21, T:0.18
Consensus pattern (45 bp):
CCCGGTATTGGCCATCGAACCCCGACCCCCGCATCCAACGGGTTT
Left flanking sequence: Indices 152002 -- 152501
CAATAACCGCCACTGAGCGGACTCATATTCCAACTTTCATATCTGGTTGCTCAGGACCCGCCATT
GGAACACAAGCTGTGGCAGTTTAGTCGACCTTGGATGGCTACTGTGCCTCCACGGTGTGGCAGTT
TAGTCGACCTTGTTAACTTGGCGTTCAGGTGGTGGTTTACAGTGCGGTAGTCGTCCACTTGGGTG
GTTCTTGAGTAAGCGTTCCTGTTGGGTGGGCGGTGGGTTAGCAGCCAGCATTCCACGGTGGGGTG
GGGTGTTGGTGGTGTTTCGGAACCATTCTGCCTTTGCGCCTTCAGGTGTTATATGTAGTAACCAT
CTTCAAACACTTGGCCCGCGCACGTATCAAGGCCCAGCTCGAGCCCCCTGCTTTCGTGTAAACAG
GTAAGTAGTGGAGTGCCATACATCTGCTTGTAGGGTAACTCGCGATACATACGGTTCCAATCCAA
TCTCACCCGTACATACAGGCTTTCCATTGGCCATCTAACCCCAAC
Right flanking sequence: Indices 152591 -- 153090
ATCTGCATCCAACATGTGGGCGAAAGAGGATATAAAGTACTTTTTATTAACTATATACGAGTATC
AGGAGCGCCTATTACGTGACGCCAACAAGCCAACAAGGGGGGTTGAACAACGGTTCGCTGGTTGG
TGGGGGAACGAGTGACGTTTATATACTTATATTAGATGCTTATATTGTTAGACGAAAACAGGGGT
GGGGATGAAATCAAATATCCAAGTTATTAGATGGAGCCGACAGCCAAGGTGGGGACATAACCGAC
CCCTTCCCTCTACCCAACCCCACGAATCACAGTTACGACCCCGCTACTGAGCTGGTTGTTTTCGT
GTTCCGGTTCACCCAACCCCTGACCTTCGGTGCGCTGGGGTGGGGTCAAGTTATTACCCCTTCCC
CTGGCAGCCCGGTCTAAGCTAACCCCCGGCACGTGCTGCATACCCCCACCGTAGTTCCCGCCCTA
CCAACTCCTTCTCTCTACACCGACCCCTTCCACCGCCTTTATGAT
Found at i:154782 original size:14 final size:14
Alignment explanation
Indices: 154763--154794 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
154753 GACCCAGGCG
154763 AGACCTACCATCAC
1 AGACCTACCATCAC
154777 AGACCTACCATCAC
1 AGACCTACCATCAC
154791 AGAC
1 AGAC
154795 TCCCTCCCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.41, G:0.09, T:0.12
Consensus pattern (14 bp):
AGACCTACCATCAC
Left flanking sequence: Indices 154263 -- 154762
ATCAGTTGTTACGTTCTCACTACCCCCCGTGGTTGTAGAAGCCCCCGGGATACGGCCTCAGTTCA
GATTGAAAGAAGCCCACATACGCTCGATAACCGCGTATGTAGACACTAGGTAAAGCCGCGCATCA
GCATGACGCAGCGAAACAGTTCAAGGTAGCCGTAACCTACACGGTGTATTGTATGCCTAGTACCG
GTTCAGGCGTTCGTTACTCTGTTTCTGTTGCAAGCTGGTTAGTTACGAGCGAGCTACGGTAAGCC
GCCCTTCGGATGGCGCGGTGAACGGTGCTAGGAACGGAAAGAGGTGCTAGTGTTTCGGGCTTTCC
CGTCTAAGGGGACCGAATGATGAAACCGTGGGGAGCCTCATTCCCAACAAAACGCACTAGTAGTT
AGATAGTTCTGTGCGTTGGATTTCAGTACCTATGGTTGCGGGAAGGCCGGTACGCACCGATCCTA
CCCAACCTATCTGCTTTTACCTATCAATTAATACCGACCCAGGCG
Right flanking sequence: Indices 154795 -- 155294
TCCCTCCCGAATACCATAAGCAAGATGACATATCAAGGTTGTAGCCATACTCCAATAGGTTGAAC
AAGTCAACTACTACTTGTTTCCTTCTATATGCCAGTGTAACGGTTGAACGCTATACAAAGAATGG
ATCCTGTCATTGCCAGTCACAAGTTACGTTTCGTGATGATGGACCAGCCGTCAATATGGTGGGTG
GGGTATGGTATGGTATGGTTTCCGCACGGGGCAACCCTTCGATGGCATGTTCGGGGTTCTACAAG
CTCTACGCCCTTCGATGGCATGTTCGGGATTCTACAAGCTCTACGTTGTACCACCAACCCGTACA
GCCGCCTCACCGTAAAGCCGTACAAGTTCGGCATCCACGTCCACCCTTCATCCCTTCTTGGCTAT
CCGCCAAGTCGTCCATATGGGTAGGATAGGGTACATTCCCCCGAGCTGCCCAGCCATAGAAACTA
CGTGAAAGCCAACATCCCCAGCCGACCAATACGATGGTTCGTCAT
Found at i:155075 original size:38 final size:38
Alignment explanation
Indices: 155024--155099 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
155014 CACGGGGCAA
*
155024 CCCTTCGATGGCATGTTCGGGGTTCTACAAGCTCTACG
1 CCCTTCGATGGCATGTTCGGGATTCTACAAGCTCTACG
155062 CCCTTCGATGGCATGTTCGGGATTCTACAAGCTCTACG
1 CCCTTCGATGGCATGTTCGGGATTCTACAAGCTCTACG
155100 TTGTACCACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.17, C:0.29, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCTTCGATGGCATGTTCGGGATTCTACAAGCTCTACG
Left flanking sequence: Indices 154524 -- 155023
CCCTTCGGATGGCGCGGTGAACGGTGCTAGGAACGGAAAGAGGTGCTAGTGTTTCGGGCTTTCCC
GTCTAAGGGGACCGAATGATGAAACCGTGGGGAGCCTCATTCCCAACAAAACGCACTAGTAGTTA
GATAGTTCTGTGCGTTGGATTTCAGTACCTATGGTTGCGGGAAGGCCGGTACGCACCGATCCTAC
CCAACCTATCTGCTTTTACCTATCAATTAATACCGACCCAGGCGAGACCTACCATCACAGACCTA
CCATCACAGACTCCCTCCCGAATACCATAAGCAAGATGACATATCAAGGTTGTAGCCATACTCCA
ATAGGTTGAACAAGTCAACTACTACTTGTTTCCTTCTATATGCCAGTGTAACGGTTGAACGCTAT
ACAAAGAATGGATCCTGTCATTGCCAGTCACAAGTTACGTTTCGTGATGATGGACCAGCCGTCAA
TATGGTGGGTGGGGTATGGTATGGTATGGTTTCCGCACGGGGCAA
Right flanking sequence: Indices 155100 -- 155599
TTGTACCACCAACCCGTACAGCCGCCTCACCGTAAAGCCGTACAAGTTCGGCATCCACGTCCACC
CTTCATCCCTTCTTGGCTATCCGCCAAGTCGTCCATATGGGTAGGATAGGGTACATTCCCCCGAG
CTGCCCAGCCATAGAAACTACGTGAAAGCCAACATCCCCAGCCGACCAATACGATGGTTCGTCAT
GCACATTGCATCACAACACCACGCTCCGTATTTGTGCACGTGTATGTTGCTTAGTCCGCCCACAT
CGTTCCACTAGCTTCGCCAACATCCGGATTCTAGATGTGGTCCAAGGTACGACCTGTAGCAGAGG
AGGGTAGCTGTACCTTAAACGACCTTCAGGAGGCTGGAGACGAACCACTTGATGGGTAACAACCA
CAGCTGGTCTAAGAGCTAGGATAAACACGGGAACCATAACAACAACTACCCTCCCGAACCCGCGC
TACGTATGCGGGTAGGGTGGGGTACCCCCCGAATACAGGCCTTCG
Found at i:156168 original size:26 final size:26
Alignment explanation
Indices: 156137--156234 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
156127 CCTCCTTCAC
156137 CGCAACAGGGTATATGATATGGGGGG
1 CGCAACAGGGTATATGATATGGGGGG
156163 CGCAACAGGGTATATGATATGGGGGG
1 CGCAACAGGGTATATGATATGGGGGG
156189 CGCAACAGGGTATATGATAT---GGG
1 CGCAACAGGGTATATGATATGGGGGG
156212 CGCAACAGGGTATATGATATGGG
1 CGCAACAGGGTATATGATATGGG
156235 CTTACTTAAC
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
23 23 0.33
26 46 0.67
ACGTcount: A:0.29, C:0.12, G:0.39, T:0.20
Consensus pattern (26 bp):
CGCAACAGGGTATATGATATGGGGGG
Left flanking sequence: Indices 155637 -- 156136
ACAGTAAAGTGCAACCACTGGTCCGTATATGTTCAGAACGCGAAGGGCATACCCGATAGCAGAGG
GTGACCTCGGCTGCGGATCTGCGCCCACTGTATATAGGGAGATTCGCCCTGGACTCGTACTAGCA
GGTTAGGAGCCTGGCGCGGATTGGCCAGAACCATTTCGTATTACCTGAACAGCACATAACCATCC
ACAACATGAAGGTACACCTCCTCTTCGGGAACCCTAGGACCTTGCGACTTGTTACCTGACTAGGT
GAGTCGGTGCCCGATAGGCCCACCGGAGAACTGTGGGGGTTGGGGCGGGGTAACCCCCGTACAAG
GGCGGGCGTACCCCTGAACTAAGAACATCCTCATCTCAACTCTAGCTGGTTCCTGTCATTCAAAT
AGCTACGTGCCGGTCGGGCCATGACAGCTACAGGCCGGCCGGAACATCCAACCGTCCCAGCATCC
CGGAAATCCACGGAGAGTTGATACAGGGAAAGATGCCTCCTTCAC
Right flanking sequence: Indices 156235 -- 156734
CTTACTTAACGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGTGGCCAGACAT
GGCAAGTAGGCACACACGCAAGACGTGAATTCCTAACTAACCCCCATGTACGCTGCCAGATGGCG
TGTTTCCATCGTCATGTTGCTGGATAAGCAAGTAACGCCTTCCCTGCCAACATCAGTGATATATG
TCCGACATAGAGCTGTCGTATATCCGAGACGTAGAGGTATGTATCCCTCTCTGCAGTAATCAGCC
AATCATACAGGGTCGGGATGGTAAGTGATCGCTCCCCGGGTTTCCCCTACGCCTTGCAACAAGTT
GTTCTTTCTATACATACAGCTCCAACCTTACCTACCCATCCAGAGGTGTACATTATTGAAGAAAG
GTTCAGTGCCAACCCAACCCCACCCTGGCAGCGGCGGCGGTTGAAACTAACTACTTCCCCACCTG
CTACATGAGGTAACTACTGTGCGATGTTGGTATTTGTGCCGTTAG
Found at i:156231 original size:49 final size:50
Alignment explanation
Indices: 156137--156234 Score: 171
Period size: 49 Copynumber: 1.9 Consensus size: 50
156127 CCTCCTTCAC
156137 CGCAACAGGGTATATGATATGGGGGGCGCAACAGGGTATATGATATGGGGGG
1 CGCAACAGGGTATATGATAT--GGGGCGCAACAGGGTATATGATATGGGGGG
156189 CGCAACAGGGTATATGATAT-GGGCGCAACAGGGTATATGATATGGG
1 CGCAACAGGGTATATGATATGGGGCGCAACAGGGTATATGATATGGG
156235 CTTACTTAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
49 26 0.57
52 20 0.43
ACGTcount: A:0.29, C:0.12, G:0.39, T:0.20
Consensus pattern (50 bp):
CGCAACAGGGTATATGATATGGGGCGCAACAGGGTATATGATATGGGGGG
Left flanking sequence: Indices 155637 -- 156136
ACAGTAAAGTGCAACCACTGGTCCGTATATGTTCAGAACGCGAAGGGCATACCCGATAGCAGAGG
GTGACCTCGGCTGCGGATCTGCGCCCACTGTATATAGGGAGATTCGCCCTGGACTCGTACTAGCA
GGTTAGGAGCCTGGCGCGGATTGGCCAGAACCATTTCGTATTACCTGAACAGCACATAACCATCC
ACAACATGAAGGTACACCTCCTCTTCGGGAACCCTAGGACCTTGCGACTTGTTACCTGACTAGGT
GAGTCGGTGCCCGATAGGCCCACCGGAGAACTGTGGGGGTTGGGGCGGGGTAACCCCCGTACAAG
GGCGGGCGTACCCCTGAACTAAGAACATCCTCATCTCAACTCTAGCTGGTTCCTGTCATTCAAAT
AGCTACGTGCCGGTCGGGCCATGACAGCTACAGGCCGGCCGGAACATCCAACCGTCCCAGCATCC
CGGAAATCCACGGAGAGTTGATACAGGGAAAGATGCCTCCTTCAC
Right flanking sequence: Indices 156235 -- 156734
CTTACTTAACGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGTGGCCAGACAT
GGCAAGTAGGCACACACGCAAGACGTGAATTCCTAACTAACCCCCATGTACGCTGCCAGATGGCG
TGTTTCCATCGTCATGTTGCTGGATAAGCAAGTAACGCCTTCCCTGCCAACATCAGTGATATATG
TCCGACATAGAGCTGTCGTATATCCGAGACGTAGAGGTATGTATCCCTCTCTGCAGTAATCAGCC
AATCATACAGGGTCGGGATGGTAAGTGATCGCTCCCCGGGTTTCCCCTACGCCTTGCAACAAGTT
GTTCTTTCTATACATACAGCTCCAACCTTACCTACCCATCCAGAGGTGTACATTATTGAAGAAAG
GTTCAGTGCCAACCCAACCCCACCCTGGCAGCGGCGGCGGTTGAAACTAACTACTTCCCCACCTG
CTACATGAGGTAACTACTGTGCGATGTTGGTATTTGTGCCGTTAG
Found at i:156254 original size:5 final size:5
Alignment explanation
Indices: 156244--156288 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
156234 GCTTACTTAA
156244 CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG
1 CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG CGTGG
156289 TGGCCAGACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.00, C:0.20, G:0.60, T:0.20
Consensus pattern (5 bp):
CGTGG
Left flanking sequence: Indices 155744 -- 156243
TTCGCCCTGGACTCGTACTAGCAGGTTAGGAGCCTGGCGCGGATTGGCCAGAACCATTTCGTATT
ACCTGAACAGCACATAACCATCCACAACATGAAGGTACACCTCCTCTTCGGGAACCCTAGGACCT
TGCGACTTGTTACCTGACTAGGTGAGTCGGTGCCCGATAGGCCCACCGGAGAACTGTGGGGGTTG
GGGCGGGGTAACCCCCGTACAAGGGCGGGCGTACCCCTGAACTAAGAACATCCTCATCTCAACTC
TAGCTGGTTCCTGTCATTCAAATAGCTACGTGCCGGTCGGGCCATGACAGCTACAGGCCGGCCGG
AACATCCAACCGTCCCAGCATCCCGGAAATCCACGGAGAGTTGATACAGGGAAAGATGCCTCCTT
CACCGCAACAGGGTATATGATATGGGGGGCGCAACAGGGTATATGATATGGGGGGCGCAACAGGG
TATATGATATGGGCGCAACAGGGTATATGATATGGGCTTACTTAA
Right flanking sequence: Indices 156289 -- 156788
TGGCCAGACATGGCAAGTAGGCACACACGCAAGACGTGAATTCCTAACTAACCCCCATGTACGCT
GCCAGATGGCGTGTTTCCATCGTCATGTTGCTGGATAAGCAAGTAACGCCTTCCCTGCCAACATC
AGTGATATATGTCCGACATAGAGCTGTCGTATATCCGAGACGTAGAGGTATGTATCCCTCTCTGC
AGTAATCAGCCAATCATACAGGGTCGGGATGGTAAGTGATCGCTCCCCGGGTTTCCCCTACGCCT
TGCAACAAGTTGTTCTTTCTATACATACAGCTCCAACCTTACCTACCCATCCAGAGGTGTACATT
ATTGAAGAAAGGTTCAGTGCCAACCCAACCCCACCCTGGCAGCGGCGGCGGTTGAAACTAACTAC
TTCCCCACCTGCTACATGAGGTAACTACTGTGCGATGTTGGTATTTGTGCCGTTAGTTCAGTAAG
AAGACCAGCCATATAGAAGACCAGCCATATGTACTTGTTATGATC
Found at i:156763 original size:16 final size:16
Alignment explanation
Indices: 156742--156773 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
156732 TAGTTCAGTA
156742 AGAAGACCAGCCATAT
1 AGAAGACCAGCCATAT
156758 AGAAGACCAGCCATAT
1 AGAAGACCAGCCATAT
156774 GTACTTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.19, T:0.12
Consensus pattern (16 bp):
AGAAGACCAGCCATAT
Left flanking sequence: Indices 156242 -- 156741
AACGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGCGTGGTGGCCAGACATGGCAAGT
AGGCACACACGCAAGACGTGAATTCCTAACTAACCCCCATGTACGCTGCCAGATGGCGTGTTTCC
ATCGTCATGTTGCTGGATAAGCAAGTAACGCCTTCCCTGCCAACATCAGTGATATATGTCCGACA
TAGAGCTGTCGTATATCCGAGACGTAGAGGTATGTATCCCTCTCTGCAGTAATCAGCCAATCATA
CAGGGTCGGGATGGTAAGTGATCGCTCCCCGGGTTTCCCCTACGCCTTGCAACAAGTTGTTCTTT
CTATACATACAGCTCCAACCTTACCTACCCATCCAGAGGTGTACATTATTGAAGAAAGGTTCAGT
GCCAACCCAACCCCACCCTGGCAGCGGCGGCGGTTGAAACTAACTACTTCCCCACCTGCTACATG
AGGTAACTACTGTGCGATGTTGGTATTTGTGCCGTTAGTTCAGTA
Right flanking sequence: Indices 156774 -- 157273
GTACTTGTTATGATCGCGTACTATACTCGAGGAAGATTGCTTCATAACGTACAAACCCGGCGTAC
GGCTACCCCTTATAACTGTAGCCGGTAGCCGCGTACATGGGGTAGGCTTGTAACAGAGATCCGGC
TACAGGGTCAGGTCGTTCTCGTTCATAACGTACAAACCCGGCTACAGCGTTATACTTATGCCGTT
ATGTCTGTGGGGTGCCTGCTCTATGCAGCGAGCCCTGCTCGGTATCTCCTCATAAGTAGAGCAAT
ATGCGTATCATGTTACGCTGTATGGTGCGGGTCGATCGATACTTGGTAGCGGGGCGAGGAGGTTG
GATGTACTCCAAATGCTTGCGGGGAAGGCTATTCGGTATAACCCAAGACCAGCTCCCCAACATCA
ACCACACCGTAAACAACATCCAGGCCGTAAGCGTCTATCAGGAAGAGCGGAGCGTAGCATACCGG
TAATAGCTGCTTCATCCTCGATTTATCGCCATGAGTGATCCGGGC
Found at i:158089 original size:44 final size:44
Alignment explanation
Indices: 158026--158113 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
158016 TGCAAGTGCA
158026 GACTAGGAGTGCAATGTGGATGGTAAGCGATCCCTGATACATAC
1 GACTAGGAGTGCAATGTGGATGGTAAGCGATCCCTGATACATAC
158070 GACTAGGAGTGCAATGTGGATGGTAAGCGATCCCTGATACATAC
1 GACTAGGAGTGCAATGTGGATGGTAAGCGATCCCTGATACATAC
158114 AGGGGTTAGC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (44 bp):
GACTAGGAGTGCAATGTGGATGGTAAGCGATCCCTGATACATAC
Left flanking sequence: Indices 157526 -- 158025
TACGAAGCTTGATTCGGTCTGCTGTTGCTGTAGCGGGCTAGATACCAACACAAAGAGGTGGGACA
CATGCCCAACGCCGAGGCGCCCCTGCGGCTTCGATCTAAGGGTGAATTGTCCGGCGCAGGAACCC
CCATCACCCATATAACGCGCATCCGAGGGCAAGTGCTTGTATCACCCCCCATACCTGCGTTAAAT
GCACATCATGAGCGTGAGACTGGAGTGCCGGACTCCCTCCCATGCTGGGCTAGGGGCGGTGATCG
CCCCCGGGAGAAAGCGAGGCTGCGGGGGGCGGGAATGACTACCCTGCTCGGTCTGTGGAAACGCA
GTGCAGTGACTATCCCGGGCTGCCTCTAGCCCTTAGTACGTAAGCCCCGTCGGTTGGGGGTTCGG
CTATAGCCCCGTCGGTTGGGGGTTCGGGTCCGGACAGTAATGAGAAGGATGACAGACCCATACGA
GTCGTTCGTCGATAACGGACAAGCTAGAGGGGAGCTGCAAGTGCA
Right flanking sequence: Indices 158114 -- 158613
AGGGGTTAGCATCTACATACAGGGGTTAGGTAACCTGGCCTCCTGTATGCATGAACGGCGAGCGC
GAGCGGAGCGGCAACAACGCGCCCGGTGTGTCGGCAACCACATAACGCCTGGTAGTTGTGTCTGT
CACCGGGATCATCCCCGACTGTTCCGTTGCATTTGGAGCAGAACTGACCCCGCCCGTCGTACCAG
CCGGAAACCCAGTTATGAACATGGTATGGCTAGGGCTCTGGTGGGCGGCGGTGGGTCCTAGTCAT
CCCCACTTGCTACATGAGTTTACGTCCAGGAATGTTCCAGTAAGATAACTGTGCTGGGGCCGAAG
TGGTTCCCGTGTGCCGCGCGCGTATATCAGGCAGGGCGTATTGTACGGTTTTCATAGGATGATTG
TCATGAGGTTCAGTGCTCTGACCCCTGTACCGTATCTCCTTACCGTGTCGTAATAGGCACGACCA
CCTATTGCAAAGGGGTACGTGTGGTGTTAGAAGGTGCGGACTGTC
Found at i:160100 original size:26 final size:26
Alignment explanation
Indices: 160071--160122 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
160061 ATTCGCAGGT
160071 TCCGCTCACGACTGTAGGAGTGGTGG
1 TCCGCTCACGACTGTAGGAGTGGTGG
160097 TCCGCTCACGACTGTAGGAGTGGTGG
1 TCCGCTCACGACTGTAGGAGTGGTGG
160123 GGGTTCGGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (26 bp):
TCCGCTCACGACTGTAGGAGTGGTGG
Left flanking sequence: Indices 159571 -- 160070
TAGGTATGGCGGTGGCACGTCATAATACGTCATACCAGAACCATATATCACATCTCAATATAGAA
ACGAAATGAATGTGGTAGGTTATTGAGGTGGGGCATCGGGAGGTCTAGTGCCAGTGACAACAATC
TTGCAGCGTATAACAGCGGGTCCTCCGCGCGTTACCAACAGCCCCAGTACGCCGTTGCCCCCCGT
ACAAGGGTGAACACCGTTAGCAGTAACAACTTGGTGCCATTGGAAAGGCCAACAAATGGGTCACA
TAGGCTGCGACCTGCGCGAAGTCGTAACTCGGTAGCTTCGGTTTCTTCCTAAGGACTCGCCACAA
ACGGGGAACGGTACAACATGATCGATCTGTGGGTCAGGGAGATCCCAGCGGTATACGCAACCCTT
ACCGTTACAACTTGTTCTCTAAGTAACTATGCGCAGCCCGCCCAAGTAACCCCCCCGCATACCAC
TGTACGGTACGGTACGCAAGGCCATTCGCACATGTATTCGCAGGT
Right flanking sequence: Indices 160123 -- 160622
GGGTTCGGGCCCCCTGTAGCCGGGCCAAGCGTAAGCACATATGTGGGGGTTCCTAGGCGCCCAAA
AACGCATACTTGAGGAGCGGGTGACCCCGTCAGCGCGTGCTCCGTAACCAGGCAGGCGTGTTGGC
GAGGCAAGAGGCTGATTATGACTTAACCCGCACCGTACAATATCCCCCCGTACAACCCCATCGGG
TGGGCGGCACATTAACCCCGATCCCACCTACTATAATACCGTATATAATAGCAGGCCCCGCAGCC
AGCGTGACCCGCGTGTGGGGATGCAGACTTGCCACTGAATGAACTGCTTACGGAAACAGTCTGGA
GACAGTTATTCTGTTACCATCGTCCAATAACAACACTGCTGCCATACCGCCACTTTGTTGACTGC
ATATGGTACCTTACCAACTCATGTCTTATCTGAAGTTCGAACCTTGCTCGAGTAAGTACCGCGCC
CTGCGCAGACTTAGGCATTAAGGATGATCGGTCACCATATACACG
Found at i:160855 original size:15 final size:15
Alignment explanation
Indices: 160835--160864 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
160825 CATACCATAT
160835 ATATGACCCACTCGC
1 ATATGACCCACTCGC
160850 ATATGACCCACTCGC
1 ATATGACCCACTCGC
160865 TAGTTGGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.13, T:0.20
Consensus pattern (15 bp):
ATATGACCCACTCGC
Left flanking sequence: Indices 160335 -- 160834
CCGATCCCACCTACTATAATACCGTATATAATAGCAGGCCCCGCAGCCAGCGTGACCCGCGTGTG
GGGATGCAGACTTGCCACTGAATGAACTGCTTACGGAAACAGTCTGGAGACAGTTATTCTGTTAC
CATCGTCCAATAACAACACTGCTGCCATACCGCCACTTTGTTGACTGCATATGGTACCTTACCAA
CTCATGTCTTATCTGAAGTTCGAACCTTGCTCGAGTAAGTACCGCGCCCTGCGCAGACTTAGGCA
TTAAGGATGATCGGTCACCATATACACGATATCGTATATAGTGGCGTCATGAGCGTGAAGGGGCG
TCACGGCTGAGTATCGAGAAACAGTGTAAAGCACGATATGTCGTGATGCTGGGATTATTAGACAC
CACGGCCAGTAACGCGTTAACAAGGCCCTCCCCGCCTTCTGTGCCCAGGCGTATCATGCTTGGAC
TGGCAGGCCATCTCTTCTATAGCCTGCCACCCCGCCATACCATAT
Right flanking sequence: Indices 160865 -- 161364
TAGTTGGTTATTCCCTCCTAGTACGCAAGTCCCTGCCTACAACCTTGATACTCTTCGGAAGACAA
TGTTACGTAGTATAGAACATTCGATCTACGAAGGCTCATCGACACATTGTGCGCGAACAGCACAC
GCATCCTCGACTGACTCCACAGGCTTGTTTTTCAGTAATGCATACCCCGGCTCGCCACCGCCCGT
ACACGCCCCCTGTGAGGGAGGGACACATACACGGAGCCAGCTCTCAGTCTGACCTCAAGCCCTTC
ATGGTTTCCTGACTCGCTTGCCTTCAGTATCTGTTGACGGCATTCCAATCCAAGTACCGAGAGTT
GATCAACATAGGCAGGAACCGCATTCTGGTACTAATACACCACCGCATAATGTCGTCGGCATACC
GACGGTACCGAGTGCCACGCTGCAACTGGTCAAATCGATCCACCTCCCCTCGCCAATTCTAGTTG
TGCAGGCAGAACGTCAATGTGGGGTGTCGGAAAGGGGTTGTTCGC
Found at i:161855 original size:12 final size:12
Alignment explanation
Indices: 161817--161872 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
161807 CCCTCACAAC
*
161817 TATGTACGGTA-
1 TATGTATGGTAT
161828 TATGTAT-GTAT
1 TATGTATGGTAT
*
161839 TATGTATGGTGT
1 TATGTATGGTAT
*
161851 TATGTGTGGTAT
1 TATGTATGGTAT
161863 T-TCGTATGGT
1 TAT-GTATGGT
161873 GCGCTTGTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
10 3 0.08
11 14 0.38
12 20 0.54
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.48
Consensus pattern (12 bp):
TATGTATGGTAT
Left flanking sequence: Indices 161317 -- 161816
TTGTGCAGGCAGAACGTCAATGTGGGGTGTCGGAAAGGGGTTGTTCGCCAAGAGCGGGTGGGGGC
GGGGTTGGTGAACTAGATAGTTGGAACGTGCAGGCCTGCAGATGCCTCCGAGCGTCAGCCCGAGA
AGCCGTCAGCCCCCCAGCTACTGTGCCGGGTAGGGTAGGGTAGGCGAGCTTCCTCAAGGTATGCG
ATTTCCTCGCTCGAGGGATCCCCGAAACCCAGCCGGGGCTACAGCACCTGCTTTCCATGCTACAG
CGGATATGTTGCCTACATGGAGGGCTCGGACTGATTCTGGACCGAGCAGCTTCCAATGCTGATGG
AAGCACGCCTGCTTCTATGATATGGCGATCGCCTCCATCAGCCGCCCCAGGCAACCCGCTCTACC
ATCCCAGGTTAACGGACGGGGTACTGGGCCCACAAGGCAGAAGCCTTCTCAGACGAGTTCCTTGG
CAGCTCGGGTGTCTAGCGCGTCTGGTGTGTTTCTGCCCTCACAAC
Right flanking sequence: Indices 161873 -- 162372
GCGCTTGTTACGTTGCGGTCTGGTGTGCTCGTGGTGTTGTTCTCTTATGTCAACTACGGTGTGGT
GGTAACCGAGCTGCAGTGAGCAGCATGGTTTGTGCTTTATGTCTTTGTAAGATGATAAAGGCCCC
TCCCTCTCCCGTGGGTTCTTGTACTCACGCACGATTGGGGTGTCGTACTTTACGCATGTATAGTA
CACTAAGAGCACCAGCTCGTGGGGAAGCGTCAAATAACGTGAAATGGTTCGAGAGAACCGTGTGA
GTGGTACAAGTCCTTTTGATCCAACTAACACAACATATGTACGAGTGGCACTTCCCAGCTGGTGG
GGTGGCGAGCTCAAGTGCGGGAGCTGGGTGGGGTAAATTCTCAGTGGCCTGAACTCCCACCCTGG
ATACCCACGGCGTGTAGCCCCGGGGGCTCTCTGTATCTTCGAACTGGGGGCCTCACCGCGGTGGA
AACTTACGTTACAGGCTCTTCGGCACAACAGCAAGTTCCCCGCGC
Found at i:163255 original size:22 final size:22
Alignment explanation
Indices: 163227--163270 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
163217 GAGAGAGCCC
163227 CTCATAGTGCGCCACTAACAGG
1 CTCATAGTGCGCCACTAACAGG
163249 CTCATAGTGCGCCACTAACAGG
1 CTCATAGTGCGCCACTAACAGG
163271 GTTTTACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.32, G:0.23, T:0.18
Consensus pattern (22 bp):
CTCATAGTGCGCCACTAACAGG
Left flanking sequence: Indices 162727 -- 163226
ATTGACTCCTAGCATGCGCTGTCAGCCGCACGGTGGTCATTCCGGGCAGCGCAACCATGGGGAAA
GGGCTCGATGCAGCTGCCTCATCACCACTATGCCTTTATATGCGGGACCAGTCCTTCGCCTGGAA
TCATGCGGGACCCGTTCACCCTGGCCTACCCGGCGGGCCGCGCGAGGACATCATGTGCGGATTAG
GGCACCGGGTGTGAAGTGAAAGATGAATAACTCACTCCTACGTACCACCCACACAGCGGAGCGTG
ATGCGCCACTCGGCCGAAGCCTACTCTGCGCGTATATGCGGTTGGTTGGTTGCGAGGTCGATCTA
TCTAGTTCTACTGTGGGAAGTCCATAACGCAGAGAACGCTAGAGAGCAGCCCGGCACACCGCTTT
CGGGTTTTCCGACACGTGGAATGGTTCCTAGGAGGGGGAGGGAAAGCCCGTTAGTGCGCCACAGC
ACTTCCATGTCTCACCAAGAACCAGGAGAGAGAGAGAGAGAGCCC
Right flanking sequence: Indices 163271 -- 163770
GTTTTACAAAGGGCGAAAGGCCTGCATGGCGCGTTGGCATCAATATAACTCACGGCGGGTTATAT
AGAGAGGTGTGCCGATCACCCATGGTTTACCTGCACAAACGGTTCCGAGGTCTGATGAACTATAC
CTGCTTCCCATAGCACAGAGGGCCTATTGGATATCGGACCTTGAAATCAATATCGACAGTTCCAC
CATCGGCAGTTCCACCCACCTTGCTAGGGAAAGAGCGGAGACCCCGTATACCCGGTTTATTCCAT
ATCGACCGTTTCTTGATATATGAGGTATGGAGAGGAACACGCCCCTTATGTAGGTAACTAGCACT
AAGCCGCATGTGGTTACCCCACCCCACATAGTACAGTACCGGCACAGAACGTATTATACGAACGA
CGACGCGTTCATACGACGACGTAATTTCTATGTCACTAGGATGTCGCGGGTTCCAACAGGTTCAC
TGTTAGAAAGAATCTGAATCCGTGGATGCTTCAACCCCTGCTATA
Found at i:163475 original size:15 final size:15
Alignment explanation
Indices: 163452--163481 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
163442 TGAAATCAAT
163452 ATCGACAGTTCCACC
1 ATCGACAGTTCCACC
*
163467 ATCGGCAGTTCCACC
1 ATCGACAGTTCCACC
163482 CACCTTGCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.20
Consensus pattern (15 bp):
ATCGACAGTTCCACC
Left flanking sequence: Indices 162952 -- 163451
CTCACTCCTACGTACCACCCACACAGCGGAGCGTGATGCGCCACTCGGCCGAAGCCTACTCTGCG
CGTATATGCGGTTGGTTGGTTGCGAGGTCGATCTATCTAGTTCTACTGTGGGAAGTCCATAACGC
AGAGAACGCTAGAGAGCAGCCCGGCACACCGCTTTCGGGTTTTCCGACACGTGGAATGGTTCCTA
GGAGGGGGAGGGAAAGCCCGTTAGTGCGCCACAGCACTTCCATGTCTCACCAAGAACCAGGAGAG
AGAGAGAGAGAGCCCCTCATAGTGCGCCACTAACAGGCTCATAGTGCGCCACTAACAGGGTTTTA
CAAAGGGCGAAAGGCCTGCATGGCGCGTTGGCATCAATATAACTCACGGCGGGTTATATAGAGAG
GTGTGCCGATCACCCATGGTTTACCTGCACAAACGGTTCCGAGGTCTGATGAACTATACCTGCTT
CCCATAGCACAGAGGGCCTATTGGATATCGGACCTTGAAATCAAT
Right flanking sequence: Indices 163482 -- 163981
CACCTTGCTAGGGAAAGAGCGGAGACCCCGTATACCCGGTTTATTCCATATCGACCGTTTCTTGA
TATATGAGGTATGGAGAGGAACACGCCCCTTATGTAGGTAACTAGCACTAAGCCGCATGTGGTTA
CCCCACCCCACATAGTACAGTACCGGCACAGAACGTATTATACGAACGACGACGCGTTCATACGA
CGACGTAATTTCTATGTCACTAGGATGTCGCGGGTTCCAACAGGTTCACTGTTAGAAAGAATCTG
AATCCGTGGATGCTTCAACCCCTGCTATACGTCAACGCAAGATCGAACTCGGCTCTCTTCGATCG
AACGCACCTGTTTGACAACGACCACTAACTCGTCGCTTGGGGGCAGTAACTGGTACGGCACCGCG
ATAAACCGCTATATCCGTTATGCGGTTAGAGGGCAGGAACTCGTACGGCACATAGCTCACCGCTA
TATCCGGTATGCGTGGGTCGTTTACTGAAGGTTAGATCGGATGCC
Found at i:164466 original size:5 final size:5
Alignment explanation
Indices: 164458--164484 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
164448 TTCATTTCTA
164458 GTAGG GTAGG GTAGG GTAGG GTAGG GT
1 GTAGG GTAGG GTAGG GTAGG GTAGG GT
164485 GTCGGGTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.59, T:0.22
Consensus pattern (5 bp):
GTAGG
Left flanking sequence: Indices 163958 -- 164457
TTACTGAAGGTTAGATCGGATGCCCCGCGTACCCTACCTATATGAAGAAGTATTCGGCCCCCGCC
CCGAACCCGCGCTATATAAGCTCTCGTAATTCTGGTTCTTTCAGTAATCGCATTCCCGGCTCGAC
GCACTATACGTAGAGATCAGGGGTGATTCGCCCCTCCCGTATATGTGGGGTGTGGGGTAACTATC
CCGGGGTTTGAAAACAACCTAGAGGATGTGGGGTTGGGGCGTGATATCGCTAGAGGCTCGCATGT
GCAGGTGGGGGCGCGGGCAGGTTCGGGGTCGGCTACATGGTTCGGGGTTCGCTCACTCAACATAC
AGTCAAGGGGAAAGCTCACTCTTAGTTGTTGGCGGGGAAGGGGCCTCTCTATATAACCCCTCGCT
CAGGCTCCATAATGTGTAGACGCGGTAGATACGATGTGTGGCACGGGGTAGATCAAATTGACGAT
GTTCAAGATGGCTTCGTAGAGCGCATTCATTTCATTTCATTTCTA
Right flanking sequence: Indices 164485 -- 164984
GTCGGGTGTCTTTAATCACGGGGTTAACCATGTTGATAAGTTGGGTCCAGAGTAACAAAAGGATA
AAAACCCCTCCCCGTGAACCGGAACACAAAAACATGTGGGGTTGGGTTAACCTCGGCACCTCACA
TATATAACCCCCCCGCCACCCCGGCTACGTTTACTTGTGGTTCGAGCCATGCGTTTCTGAGCGGG
TGTGGTGTCCAACTTTCATACACCCTGGCCGCCCGCCTTCAACCGTCATCAATAAAACCATCATA
ACACCTCGAATCTTCACCGTCAACTCAAACGCAATGCAGCGTGTTGGCGCTCATGGTAAGGTTGA
CAGCTTGGCGTTGGGCCAGGGCAAGTTGGTACTGTTACGATGCAAGCCAAATTCGTCGGACCCAC
ATGCGAGCTGAACATTCACGGTGCACCGCTCGTGGAGGGCGAAGCTCGAGTGGATGATGCACGAG
CTCGGGCCGAGTTAACAAACGCTTTTGACCGTTGACAGACAGAGC
Found at i:166251 original size:29 final size:29
Alignment explanation
Indices: 166209--166266 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
166199 AAGAACCTTA
166209 GTGAGACATGAACGGTGGGCTAAGCCATG
1 GTGAGACATGAACGGTGGGCTAAGCCATG
166238 GTGAGACATGAACGGTGGGCTAAGCCATG
1 GTGAGACATGAACGGTGGGCTAAGCCATG
166267 TAGAGGTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.38, T:0.17
Consensus pattern (29 bp):
GTGAGACATGAACGGTGGGCTAAGCCATG
Left flanking sequence: Indices 165709 -- 166208
GTGGAATTATGGGTTTACCGGCACAAAGCAGCTTGACACGCCCAGCAGCTTTCCACTCTCCAGAT
CACGCCCAGGTTCTCAGTTGTTCAAACACCGTATGACACCAGAGGTCTGAATCCATGTGAATTGT
CTAGCATCGCGTGGTCGTAAGTCCAACTAAGTGAGTTATGCATAGCGCGTTGTAATAGCACATCC
CGCCAGGACGGTATGGTCAGAGTGCGAAGGCCCACCTTTCCCGGGGCTTGCCGTTCAGTAACGTC
GAAACATCTATATAGTCGTCGCTCCACTCATATCGCCCCAAGCAGAGGTGCTTGTATATGCCTAT
GTGCGTGTTCTTGGCAGAACGTATAAAACCGTCGAGGCTCGTATTGAAGAGCCATTTTCATCCCG
GGTTATATAGAGAGGTGTGCCGCCCGCCACTACACGTTCAGTATGTGCTGTTCATTCATAGTACA
TGTGTTTCATGTACTGCGCAGTAAGTACCTTCTCGAAGAACCTTA
Right flanking sequence: Indices 166267 -- 166766
TAGAGGTACTTCACAGTACACGACAGCCAATACCCTATCGACGGGGAGGGAAGGGATAGGTATTG
TCCACAACTCACAGGTAAGATCGGGTTGCGGGGCAGGGATGCTTTTTTGAACAGTTGTACCTCTC
TAGGGTTATATAGAGAGGTCCCGGCCACACCACCAACAAAGGGGTATAACTCAAACACACAATGT
GACGTCGGTAGAAGCGGTTCCTTGGACACTTATTGTTTGTAAGAGGGCAATGGCTCTAGTTGACA
GTTGACCATCACGGGCTACCGAAGCATGAAGTTCAGTAGTCCTAAGTGCGGGCTGCTTTATGGTG
TTACGAACTGTCTTCCCTTGACATTAGAGGTTAGTCGGACAACGAACATAACAGCCCAACCACCC
CCACCGTGCTAGTTCTGATGGATGCGTAGTTACACACAAGCAGAGAGTTTATCATAGACGCTCTT
TCTGTATTCCCAACCACCATAGATGGATGCGTAGTTACACACAAG
Found at i:167707 original size:19 final size:19
Alignment explanation
Indices: 167683--167739 Score: 105
Period size: 19 Copynumber: 3.0 Consensus size: 19
167673 GCTGACAAGT
167683 TACGCATTCACCGGTCCTA
1 TACGCATTCACCGGTCCTA
*
167702 TACGCATTCACTGGTCCTA
1 TACGCATTCACCGGTCCTA
167721 TACGCATTCACCGGTCCTA
1 TACGCATTCACCGGTCCTA
167740 GAGAACCAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.21, C:0.35, G:0.16, T:0.28
Consensus pattern (19 bp):
TACGCATTCACCGGTCCTA
Left flanking sequence: Indices 167183 -- 167682
CATCGAGGAGGGAGCAACCAACTAAGCGAGAGAGTATCTCTTCAACGATCATCACCACACTGCCG
CGTAAGCTTTCTGATCGCGTCTTGTCTCTTCCGTTATCGACGATCAGCTTCGCAGCGGTAGGAAC
AACGCCACTGCGTTGTCGGATTTAGGGTCTCTCCCACGTGGCGGTGGGAAGCCGTCATGTAGGAC
GGGAATACGATAACGAAAGGCTGGAAGACGCTTCATCTCGCAGAGCGGGTCTGGTGTTAGACCTC
TAGGCAGGGTGCACCACCCCACCTACCCTCTATCGCGGAGGTTTCGTCCCTCGTACGTAAGTACC
AGGATCGGGATATCCTGGAAGAGTACGCCACCCGCCAATCTCTCGGGCCACGTTAACGATGTTAG
TTTCGCCTCTTTAGACCAGGACAGCGATCGAGGATGTCGCTGCCGCGAACACGTACAGCTTCCCA
GGACATAGGCTTAGACCTCCAGCCGTAAACACGAGGCTGACAAGT
Right flanking sequence: Indices 167740 -- 168239
GAGAACCAATGAGCGGTCCAGTCCCTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTATTCC
CTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTATGACTAGGCGCCACACACAAGCTTGTCA
ATCCAGGACGTACGCACGCGTACGTCGTAAGCTAGGGGTTAAGCAAGCGACCGCCAGTAATGTCG
AGTCGCACAGACAAGTTGGCCTAGCACGAGGACCAGCACAGTTATTGACGTACGGTGGGGCTCAA
CACCAGAATGGCCTCGGGAAGCCAGATACGGGAACCTGCCGAAAGGCAGCAGCTTCCTTCCTTAC
TGGGGGACCCTTGCCCAGCCCGTTCACGCAAGTAAACGCGCGAGCCTTTCGATAGGGCTGAAGTG
CCGGGAAGGTTCACACCTTCGGTCTCGTCTTCATACGTTGACAGGTAGGTATTCGAGGCACAAAG
CGCACGCATGGCCAACGTTACGAGAGCTCCTCTTACAAACTACTT
Found at i:167818 original size:41 final size:41
Alignment explanation
Indices: 167761--167842 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
167751 AGCGGTCCAG
167761 TCCCTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTAT
1 TCCCTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTAT
167802 TCCCTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTAT
1 TCCCTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTAT
167843 GACTAGGCGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.10, C:0.32, G:0.24, T:0.34
Consensus pattern (41 bp):
TCCCTCCTCGGCACGTGGGGTTTATTGATGCCCGTCTCTAT
Left flanking sequence: Indices 167261 -- 167760
ATCGCGTCTTGTCTCTTCCGTTATCGACGATCAGCTTCGCAGCGGTAGGAACAACGCCACTGCGT
TGTCGGATTTAGGGTCTCTCCCACGTGGCGGTGGGAAGCCGTCATGTAGGACGGGAATACGATAA
CGAAAGGCTGGAAGACGCTTCATCTCGCAGAGCGGGTCTGGTGTTAGACCTCTAGGCAGGGTGCA
CCACCCCACCTACCCTCTATCGCGGAGGTTTCGTCCCTCGTACGTAAGTACCAGGATCGGGATAT
CCTGGAAGAGTACGCCACCCGCCAATCTCTCGGGCCACGTTAACGATGTTAGTTTCGCCTCTTTA
GACCAGGACAGCGATCGAGGATGTCGCTGCCGCGAACACGTACAGCTTCCCAGGACATAGGCTTA
GACCTCCAGCCGTAAACACGAGGCTGACAAGTTACGCATTCACCGGTCCTATACGCATTCACTGG
TCCTATACGCATTCACCGGTCCTAGAGAACCAATGAGCGGTCCAG
Right flanking sequence: Indices 167843 -- 168342
GACTAGGCGCCACACACAAGCTTGTCAATCCAGGACGTACGCACGCGTACGTCGTAAGCTAGGGG
TTAAGCAAGCGACCGCCAGTAATGTCGAGTCGCACAGACAAGTTGGCCTAGCACGAGGACCAGCA
CAGTTATTGACGTACGGTGGGGCTCAACACCAGAATGGCCTCGGGAAGCCAGATACGGGAACCTG
CCGAAAGGCAGCAGCTTCCTTCCTTACTGGGGGACCCTTGCCCAGCCCGTTCACGCAAGTAAACG
CGCGAGCCTTTCGATAGGGCTGAAGTGCCGGGAAGGTTCACACCTTCGGTCTCGTCTTCATACGT
TGACAGGTAGGTATTCGAGGCACAAAGCGCACGCATGGCCAACGTTACGAGAGCTCCTCTTACAA
ACTACTTGGCCTTCCTCGTCGTATCAGTCTATGACACCACTCCACCATCCTCGGTTAACCCGTGT
GCGAAGTGTCCCAGGACAGACCAGCTAGAGTCTTCGTAGGTCTGT
Found at i:171769 original size:6 final size:6
Alignment explanation
Indices: 171753--171807 Score: 103
Period size: 6 Copynumber: 9.3 Consensus size: 6
171743 TCGGCCACCA
171753 CTCCA- CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC
1 CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC CTCCAC
171800 CTCCAC CT
1 CTCCAC CT
171808 TACATAACTG
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.10
6 44 0.90
ACGTcount: A:0.16, C:0.65, G:0.00, T:0.18
Consensus pattern (6 bp):
CTCCAC
Left flanking sequence: Indices 171253 -- 171752
AACTAGCGTTCCACGCCCCGGCTATACGGTGTAACTGTGTTCCACGCCCCAGGTACCGTAGCGTA
AGTGGGATACTGCCGCGAAGCGGTCCCCGCTGTACCCGCCCGTCAGGTCCTCGTTTATTGGGAAC
CATTATAGTACGGATATGCGTACGGATATGATATGCCCGAAGGACTGCAGCGAGCCTTCGGCGAT
ATCGAATAGACACCGCCTGAAGGCGGGCAGAGGGTGAAACGGCTGGTTCTTCACCGGCAGCTACG
GCGGGAACACATAGGCATTGTAGCGAGCCAACACGAGGCTACCCCCACCTCAATAACTGGCGTTT
ACGAAAGAGAGAATGCAGCTACGGTTCCTCACTGCAGCAGCGTTGTACAGGATAACCTGAAAGCG
TGTCTATTCAGTTCGTAAGTAACGAGTTCAGTAATCGGATCCCCCGGGTGGGGAACTACGTACTT
GAGTTACCCGTGTCTGAGTTGATCCGCTGTTGTTCTCGGCCACCA
Right flanking sequence: Indices 171808 -- 172307
TACATAACTGGTAAGGTTGCGGTTGCGGTTGCGCCCATATCATATACCCTGTTGCGCCCCCCATA
TCATATACCCTGTTGCGCCCCCCATATCATATACCCGTGAAGGAGGCATCTTTCCCTTTCCATAA
GTAGTTTACGTATGCAACTCGCGAGTTATCGCACGGGCGGTGGCAAGGTTGGGCGGGGTATTCCA
CCTCAAGTAGAGCCATGCGGTGGCAAGGTTGGGACGACACTGTCATAGACTCACGTAGAGTACGA
CAAGTCAACCGACCCTGCGGTGGGCATACTGTGCCCTGCAAACACTGTGACAGTTCGTACCCGGA
GGGGTCTAGGCAAGGGACAGAGGAGTCGTCATCTGCGTACCTCACAAACAACCTAGACTCCCTGA
GCGGCAGGCGGTCGAGATCGTGGAGAAACAAGCTTATTAACTCGCGTTATGCAGCGTGAACACAG
AAGGGCTGGCCCCGTCTCTCTCCCCGTGGACTCTCTATTCTAGCG
Found at i:171875 original size:26 final size:26
Alignment explanation
Indices: 171841--171908 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
171831 TGCGGTTGCG
171841 CCCATATCATATACCCTGTTGCGCCC
1 CCCATATCATATACCCTGTTGCGCCC
171867 CCCATATCATATACCCTGTTGCGCCC
1 CCCATATCATATACCCTGTTGCGCCC
171893 CCCATATCATATACCC
1 CCCATATCATATACCC
171909 GTGAAGGAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.22, C:0.43, G:0.09, T:0.26
Consensus pattern (26 bp):
CCCATATCATATACCCTGTTGCGCCC
Left flanking sequence: Indices 171341 -- 171840
TCCCCGCTGTACCCGCCCGTCAGGTCCTCGTTTATTGGGAACCATTATAGTACGGATATGCGTAC
GGATATGATATGCCCGAAGGACTGCAGCGAGCCTTCGGCGATATCGAATAGACACCGCCTGAAGG
CGGGCAGAGGGTGAAACGGCTGGTTCTTCACCGGCAGCTACGGCGGGAACACATAGGCATTGTAG
CGAGCCAACACGAGGCTACCCCCACCTCAATAACTGGCGTTTACGAAAGAGAGAATGCAGCTACG
GTTCCTCACTGCAGCAGCGTTGTACAGGATAACCTGAAAGCGTGTCTATTCAGTTCGTAAGTAAC
GAGTTCAGTAATCGGATCCCCCGGGTGGGGAACTACGTACTTGAGTTACCCGTGTCTGAGTTGAT
CCGCTGTTGTTCTCGGCCACCACTCCACTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCT
CCACCTCCACCTTACATAACTGGTAAGGTTGCGGTTGCGGTTGCG
Right flanking sequence: Indices 171909 -- 172408
GTGAAGGAGGCATCTTTCCCTTTCCATAAGTAGTTTACGTATGCAACTCGCGAGTTATCGCACGG
GCGGTGGCAAGGTTGGGCGGGGTATTCCACCTCAAGTAGAGCCATGCGGTGGCAAGGTTGGGACG
ACACTGTCATAGACTCACGTAGAGTACGACAAGTCAACCGACCCTGCGGTGGGCATACTGTGCCC
TGCAAACACTGTGACAGTTCGTACCCGGAGGGGTCTAGGCAAGGGACAGAGGAGTCGTCATCTGC
GTACCTCACAAACAACCTAGACTCCCTGAGCGGCAGGCGGTCGAGATCGTGGAGAAACAAGCTTA
TTAACTCGCGTTATGCAGCGTGAACACAGAAGGGCTGGCCCCGTCTCTCTCCCCGTGGACTCTCT
ATTCTAGCGTATTGTGGTCAATACGCAACTCATACTCGTGCCGGGTAACTCGGTGGGTGTCACTT
ACAGAGTCGGTGTCATTGAGTCGGCGATCCATCCTAGGGTAGAGG
Found at i:173219 original size:66 final size:66
Alignment explanation
Indices: 173113--173241 Score: 249
Period size: 66 Copynumber: 2.0 Consensus size: 66
173103 TTACGTTAAC
173113 ACCAACAACGCGAGTACTAACTACATATGCCCATATCATATACCCTGTTGCGGTAACCCGGATTT
1 ACCAACAACGCGAGTACTAACTACATATGCCCATATCATATACCCTGTTGCGGTAACCCGGATTT
173178 T
66 T
*
173179 ACCAACAACGCGAGTATTAACTACATATGCCCATATCATATACCCTGTTGCGGTAACCCGGAT
1 ACCAACAACGCGAGTACTAACTACATATGCCCATATCATATACCCTGTTGCGGTAACCCGGAT
173242 GTAACGTCAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.25
Consensus pattern (66 bp):
ACCAACAACGCGAGTACTAACTACATATGCCCATATCATATACCCTGTTGCGGTAACCCGGATTT
T
Left flanking sequence: Indices 172613 -- 173112
GTCGATCGGTCCCTGGTTGCGATCGGGAGTTGGGTCACCCTGTCAAGGTGACTTCCTGTTGGGTC
CGAACCCGGTTGTTTTTATATGGTTGTCGGGTCAGGGGCCTTTGTTAACTACGTCACCAACCATA
CCATACCATACCATAATATGTACGTGTGAAAACTACTTAGTACATAACTCTTTACTGACGCATCC
ATTCTCGTGCAACCAAGTTACCCGCCACGTAACACAAGGCATCCCTAGTGACTCCGAACAGCGAA
GCCCCTATGTGTTGGAAGTCTATATATCCCCTCCAACCTGCCGCCCACTCACGCATTTGTGGATA
CAGATCTCTTCTGCATCCCACTGGGGCGGGCCAGCTACGGTCGGATTCGCCACGCTTCCGGGTTT
GCCAGGGTTGGGTTGGCCGGAACGGCATGTAGAGCCTGCGCCGGTTTCGGTGAGGTTCTTTCAAA
TTCCGAGGGGAGTAGATGTCCCGTTGGTAGCTCCATTACGTTAAC
Right flanking sequence: Indices 173242 -- 173741
GTAACGTCAGTCAGTGTATGAGGGGTCGACGCCCCTACATACGCCCCCCCGCATAATATAATATA
ATATGATATAATACCCCCCTGGTTCCGGCTCCAACGCTTGCTATCAACTAAGTCGGTCATCTTCA
GAGCACAGGTTCGAGCTTCATAGTACCCCAGCTTAAACGTAACCTTTCCTCGTACGTATCTTACC
GGTTCACTGCTGCCACGAAACCCTGGGCTGAGCACATATGAATATCACATCCTGATAGTTGCCAT
CCCTTACCGAACCAACAACTAGTTAACGCCGTACAAACCGGCACAGTTGGGTTGGGTGGTATTGG
GTAACATATGGGCCCCCGTCTGCACATGCTTCGGGGGTCACGCGAGAACGTCAATGTGGGGTACT
GGTTCTACAGGTAGTTGGTTATACGCCAAGTACGGGATTGGTAAGTGTTAACCCCCTGTGGGAGG
TGGCATATGGGCCCCCGTCAACAATGCATACCATATGGCGACAGG
Found at i:175568 original size:15 final size:15
Alignment explanation
Indices: 175548--175576 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
175538 GCTGGTTGAC
175548 AGTCACGTATAGGTT
1 AGTCACGTATAGGTT
175563 AGTCACGTATAGGT
1 AGTCACGTATAGGT
175577 GTATTGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (15 bp):
AGTCACGTATAGGTT
Left flanking sequence: Indices 175048 -- 175547
GTCCCATAGCGTCATTACCATAAGTAGCCTTGAACAATTACTGACAGTACCCTTTCCTTGTTATC
CGTTACCATACGTGTTAACAAAATCCCACGAACCTTCACAACATAAACACCAGCTCTACGTAACA
AGCCACGCCGACACTCACCATCTCTACGTAACAAAGTCCACACGCCTCAATCCAAGTCATAACTG
CCCCTCTGAAGCCAGCATGTAGTACCGCATCAAGCTATCCCACTAGAGCCATAAACGCTCTCAGA
GCCCAGTTGGACCATGAAGCCACTTACGTAACGTATAGCATTTCCATATACCGAAACCAATACCG
ATTCACGTTATTGACCTTCCGCAGTCAACGTTTACTCAACACAATCCATTCAATGCAGACCTTTA
TACGCTGTGTCCCTGGAGTCATGCCAAGTACAGTAGAGTACGTTGCGGAGGGTGCCGTGCCGCTA
CACCTTCATATACACGTGTAGGCTTCGTCAACTAGGCTGGTTGAC
Right flanking sequence: Indices 175577 -- 176076
GTATTGGCAAGTGACAGTCTCGAACAGATAGGTAGGTACCGTACCGCGCAGGGCGTGGGCTTTAC
ATTGCCTCATCCCTGACCTTGCGTGAACCCAAACGCGCCGCAAACACCCAGCTACTGTCAACGCC
TTGCCCCGCGCAATAGGTGGGTAAGGGGGTGTAGGGGAAGGATGGTTGGTGGAATCCAATACGGG
GTTGGGGTGCACATGGTAATCGAAAACAGGGGTGGGGAGTTGTATCTGGTGGGCGTGCCGATGTT
GAAGCATGTTGTGGGCGAACGAGGTTATCTGTTTGTTGCTCAGTATACCTGCCCATTACTAAGAG
AAATAAACCATGGGTTGATAACTCTATATAGCCGCTTACAGGGCTACGTAGGGGGTACCACAACC
CTGATACACTAAGCCCTGGGACAGGTAGTCGAGTTCTACGTGGGCTCACAGCCAATGGAGTCGGT
CGTGCAGGGAGTCGGCTCGCTTCGCTCACACAGGGAAGGGAACAG
Found at i:179236 original size:14 final size:14
Alignment explanation
Indices: 179217--179244 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
179207 TTCACTGAGC
179217 CTCACGTGGTTGCA
1 CTCACGTGGTTGCA
179231 CTCACGTGGTTGCA
1 CTCACGTGGTTGCA
179245 AGAATCGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (14 bp):
CTCACGTGGTTGCA
Left flanking sequence: Indices 178717 -- 179216
ACTACCCCCGCATACCCCCCTGGTTCCGGCTGTGTAGTGGTTGAATCCGCATGGCCAGCCCGACG
GAGCCATCGTAGGTGGGGCGGCCCGTTAGCGAGAGCACTCTTCCACGCTACGTAGAGTGACGTTC
TGGTCCGTTATTGGTTGGTTATGACCGGCAATCACGACAGACCGGGCATACTGGGTGGGAGTGTA
GGAAAAGGTACCAGCACAACTATCGTGAGCCGCCTATACTATATGGTGCTTGCCACACGGTAGTT
GGGCAGGTTTCAGTGATTGTTGTTCGCACCGCACGCTGTCCAGGCAGCTCTTGGTTGAGCGCCCC
CACCCAACGTTATCCCCACATCCACTACCGTACACAAGGATTCAAACGCACCCACCATCCATACC
CCGGGTAAGGAACACCCACCCCCTGTACTAGTTGCAAAGGGGGTCACGCTCCGGAATGAGGAAGG
ATACACTTGCATAACGCATACTTGCTTGTGCCGTGTTCACTGAGC
Right flanking sequence: Indices 179245 -- 179744
AGAATCGCCACCGCAGCCTCACTTCCCTCATGCCCGCAGCCTCACTTCCCTCATGCCGTATGACC
CAAGGGGCCGTGATTGTCCCCCCGCACATGGACTCAGTTCCGACAGAGAGGACTCCGGGTTTACA
GTAAGACACACAACCCATTGATACTCGCGTGTTTACGTAGGGTACTCAAAGGAAACATCGTGGGA
TCAGATACACATGAATTACCCTTTACCAAGAACAAACTGTGTGTTACGTTACTTCGCCACCCCAT
CCAACGTATACGGAGCGACACCCCATACGGTATTCATGAGTGGTTGTTGCCTTTGTCACGGCAGT
CACCCCAACCCCGGTGCTGTGGGCATGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCTACCCCC
CGCTGCTGTGGGCGTGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCTGGCAAATGGGTGATTAC
TGAAGGAACCGTACGTCAATAACCAGTAGAGCGTTTAACGTCGAC
Found at i:179285 original size:23 final size:23
Alignment explanation
Indices: 179255--179301 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
179245 AGAATCGCCA
179255 CCGCAGCCTCACTTCCCTCATGC
1 CCGCAGCCTCACTTCCCTCATGC
179278 CCGCAGCCTCACTTCCCTCATGC
1 CCGCAGCCTCACTTCCCTCATGC
179301 C
1 C
179302 GTATGACCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.13, C:0.53, G:0.13, T:0.21
Consensus pattern (23 bp):
CCGCAGCCTCACTTCCCTCATGC
Left flanking sequence: Indices 178755 -- 179254
GGTTGAATCCGCATGGCCAGCCCGACGGAGCCATCGTAGGTGGGGCGGCCCGTTAGCGAGAGCAC
TCTTCCACGCTACGTAGAGTGACGTTCTGGTCCGTTATTGGTTGGTTATGACCGGCAATCACGAC
AGACCGGGCATACTGGGTGGGAGTGTAGGAAAAGGTACCAGCACAACTATCGTGAGCCGCCTATA
CTATATGGTGCTTGCCACACGGTAGTTGGGCAGGTTTCAGTGATTGTTGTTCGCACCGCACGCTG
TCCAGGCAGCTCTTGGTTGAGCGCCCCCACCCAACGTTATCCCCACATCCACTACCGTACACAAG
GATTCAAACGCACCCACCATCCATACCCCGGGTAAGGAACACCCACCCCCTGTACTAGTTGCAAA
GGGGGTCACGCTCCGGAATGAGGAAGGATACACTTGCATAACGCATACTTGCTTGTGCCGTGTTC
ACTGAGCCTCACGTGGTTGCACTCACGTGGTTGCAAGAATCGCCA
Right flanking sequence: Indices 179302 -- 179801
GTATGACCCAAGGGGCCGTGATTGTCCCCCCGCACATGGACTCAGTTCCGACAGAGAGGACTCCG
GGTTTACAGTAAGACACACAACCCATTGATACTCGCGTGTTTACGTAGGGTACTCAAAGGAAACA
TCGTGGGATCAGATACACATGAATTACCCTTTACCAAGAACAAACTGTGTGTTACGTTACTTCGC
CACCCCATCCAACGTATACGGAGCGACACCCCATACGGTATTCATGAGTGGTTGTTGCCTTTGTC
ACGGCAGTCACCCCAACCCCGGTGCTGTGGGCATGTTCGGGGTTACGCCCTTGGTTGTACCGTGT
CTACCCCCCGCTGCTGTGGGCGTGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCTGGCAAATGG
GTGATTACTGAAGGAACCGTACGTCAATAACCAGTAGAGCGTTTAACGTCGACTAAGGGGGACCG
GTAACCATGAAAACCACATTGGTGCTTCCTGCCTTCCTCCGCAAA
Found at i:179657 original size:54 final size:54
Alignment explanation
Indices: 179578--179682 Score: 192
Period size: 54 Copynumber: 1.9 Consensus size: 54
179568 GTCACCCCAA
*
179578 CCCCGGTGCTGTGGGCATGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCTACC
1 CCCCGCTGCTGTGGGCATGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCTACC
*
179632 CCCCGCTGCTGTGGGCGTGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCT
1 CCCCGCTGCTGTGGGCATGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCT
179683 GGCAAATGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.06, C:0.30, G:0.34, T:0.30
Consensus pattern (54 bp):
CCCCGCTGCTGTGGGCATGTTCGGGGTTACGCCCTTGGTTGTACCGTGTCTACC
Left flanking sequence: Indices 179078 -- 179577
AGGATTCAAACGCACCCACCATCCATACCCCGGGTAAGGAACACCCACCCCCTGTACTAGTTGCA
AAGGGGGTCACGCTCCGGAATGAGGAAGGATACACTTGCATAACGCATACTTGCTTGTGCCGTGT
TCACTGAGCCTCACGTGGTTGCACTCACGTGGTTGCAAGAATCGCCACCGCAGCCTCACTTCCCT
CATGCCCGCAGCCTCACTTCCCTCATGCCGTATGACCCAAGGGGCCGTGATTGTCCCCCCGCACA
TGGACTCAGTTCCGACAGAGAGGACTCCGGGTTTACAGTAAGACACACAACCCATTGATACTCGC
GTGTTTACGTAGGGTACTCAAAGGAAACATCGTGGGATCAGATACACATGAATTACCCTTTACCA
AGAACAAACTGTGTGTTACGTTACTTCGCCACCCCATCCAACGTATACGGAGCGACACCCCATAC
GGTATTCATGAGTGGTTGTTGCCTTTGTCACGGCAGTCACCCCAA
Right flanking sequence: Indices 179683 -- 180182
GGCAAATGGGTGATTACTGAAGGAACCGTACGTCAATAACCAGTAGAGCGTTTAACGTCGACTAA
GGGGGACCGGTAACCATGAAAACCACATTGGTGCTTCCTGCCTTCCTCCGCAAAACAGGCCTTTT
TCCACCAATACGAAACAACTACGAAAATCGAGAACGACTACAACCTTGCGCATGATAACAACTAT
CTGTAACTCTCTAACGCTCGTCTATCCGATTTGTCGAAACGGATTGAGTGGGGCGGGGCGTTTCC
AAGATAGTTCGATAAACCACAGTTATGATCATACGTAGGAATGGTGGGCCACCGGCTACGGAGCC
GCAATAGATATAAATAGAGCTTCCCCAAAGGCATCATAAAGGATTCTAGACTCCCGCGGTATTCA
CAAACAAACATACGGTGTCCGGGTCACTTTCTTCGTTACTAAGGTGAAGGCGATTAGTCCCGTCG
CTTTCAGTGTGGCCGGGAGGCAGGCCACAATGTTCTGGTTTTCCA
Found at i:180931 original size:19 final size:19
Alignment explanation
Indices: 180907--180944 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
180897 AGGTCGAAAT
180907 CCGTGTGATCGTGTGTTGA
1 CCGTGTGATCGTGTGTTGA
180926 CCGTGTGATCGTGTGTTGA
1 CCGTGTGATCGTGTGTTGA
180945 ATGTTCTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.37, T:0.37
Consensus pattern (19 bp):
CCGTGTGATCGTGTGTTGA
Left flanking sequence: Indices 180407 -- 180906
CATCCCCAAGTATGATTCGGGGGTATCCCCTTCAAACACCGCACATGGCCTGACATCGCTTACAA
AGCTGTTGAAGGATTCGGGTCACGTGCTTCAGCACCGGAGGAATGTGCCTCACATCAACATCACC
GACCAGTATATCGTCACAGTATCGAACCATACGGGGGGCAGAATCCCTTCCTTTTCCAATGAGAG
TCAAACTCGTGGAGAACCACATTCATTAGGAGGGGGGAGGGCGAGCACCCCTGTGGAATGCCAAC
CCCGGGATTTCCGTATCCCCGCCCCGTGGAATCTAACATAGTTGCTTGGGAAAGGCGCATAACGA
GATTGATTAGTTGTTGGGTGATACATCCATTGGTACTTCACGCTCTTTCAACACCGAATGCGGGA
TCGTATCGAAGCACTTGACGATGTCAATGAAGACCAGAGCCTTAATACGAAAACCAAGATCGAGC
GGCAACAATGTGCTGTAAGACACCCTATCTATATAAGGTCGAAAT
Right flanking sequence: Indices 180945 -- 181444
ATGTTCTATCAATAAGTACGGCTTACAGAAGTAACTGAAGAGCTTTCAACACAGGCTCAGCATGC
GCGGGGGGAATGGTAAGCGGCCGGAGTCCGACCTTACCCGGCATGTAGTTGGGAAAGAATTTACG
ATGCAATATGCCCCCTCGTATCTCGGCCCCTTCGTATAGATCGGATCCGCCAAGGTCCCGCAATA
TACCATTCCTAAACGCATACTTAGTAGACAAACTTCGACGAGTACCAGACCGTTGCACGTATGCG
AAATGTTTCAATCGAAGCAATGCATGTCGATCGTCGACTTCAGAAGAATACGGCCCATGTATGGC
GTGGTTTCTTCAGTGTACCTGTCTCGATATATATGAGGTGAGGAGATCCCCGATTTGATAACACT
TGAGTTCATAATGCATATGAAACAATATAACTTGAAGAGGGTGCATATGACCTTGTGGAAGGAGG
TTGGACAACATACGCTAGCACTACCCGGGTTCCGCCCAACCCACG
Found at i:182837 original size:21 final size:21
Alignment explanation
Indices: 182811--182852 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
182801 GGGAGCATAT
182811 AGAACCGAGAGTGAACCCCAG
1 AGAACCGAGAGTGAACCCCAG
182832 AGAACCGAGAGTGAACCCCAG
1 AGAACCGAGAGTGAACCCCAG
182853 CGCAACCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.29, G:0.29, T:0.05
Consensus pattern (21 bp):
AGAACCGAGAGTGAACCCCAG
Left flanking sequence: Indices 182311 -- 182810
GAAGCGCATAAAGCTCTTGGTACCGAGAAGCCACACCTATGTGCTGAGGCAGGAACCCCGGAGGT
TATCATGAGGCAGCCGAAGCTACCCCACACGTGATTCCGCGACCACCTTCCTTGGTAACGCGCCT
GGAGCTTGCACCAAGCCGCCCCCTATATACCCGTAGGGGTGGGGAAAGGCTCTTGATGCTTGGGT
CAGTGGGGAAAGGCTCGGTCAATAAAGGGAGCCCACCCGCTACAACGCCCGGCTCCAAGACCGCA
ACTATGGGTTCGGGGGTACCCCCCGAATACGGCGTTCATCGTCCCCGGATTACCGTATATAGGAA
TCATCTACGGTGAACAAATGATTGTGAGTGCGAGCCTCCACACTGCCCCGTTAAGTCCAACCCAA
CCGCACCGCGGGGAACGCAACCGAACCGATCGCGCACAACCGCAACTATTATATCCCCCCCGCAT
ACGTGGCCCGTTCTACCCCCTGGTTACGGCCGGTTGGGAGCATAT
Right flanking sequence: Indices 182853 -- 183352
CGCAACCATCGATTACGCAATATCAGGCCTGGCCCAACTGATAGCGGGAGCATATAGAAAGCCAT
AGTCACCGGCGTACGCGATATCGGAGGAAGGCAATATCGAAGGATGTCGCCGATGCCCAATGGCA
CCACTTGCGTACGCTTCGAAACGGCCAGCCGTGAAGCGGGACCCAATACGGTCAAGGTCCTGCTG
CAGAGGACCGTATATGGAAGCACAGTGCCAACAACCTCCAACAATATCAGTGACGTGAGTACTCC
AACAACTGCCGACTACCCACGTTGCGGGGGTAGATTCATTCTCAGTCGAACATCCCTCTCCGAAA
GCTGGCTGGCCGAACTCCGCATTACCCCCCTGGTTTCGGGCCGCGGCGAAGGCGAGCTCTACCCC
GAGATCGCCACTATGAAGGAGCCAACACCGGGTACTAACGGCCCTTCGTCTAGCAACTGTCCCGC
TCCCGGTATGTAGGGTAGCGGGAACAACCGCCTGGCCGATTTCCA
Found at i:185613 original size:23 final size:21
Alignment explanation
Indices: 185586--185648 Score: 101
Period size: 20 Copynumber: 3.0 Consensus size: 21
185576 TAGCCGCAGC
185586 GCTGGGTCACCTTCCTTCATGCT
1 GCTGGGTCACCTTCCTTCAT--T
185609 GCTGGGTCACCTTCCTTCA-T
1 GCTGGGTCACCTTCCTTCATT
185629 GCTGGGTCACCTTCCTTCAT
1 GCTGGGTCACCTTCCTTCAT
185649 ATATGTGCGT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
20 20 0.51
23 19 0.49
ACGTcount: A:0.10, C:0.35, G:0.21, T:0.35
Consensus pattern (21 bp):
GCTGGGTCACCTTCCTTCATT
Left flanking sequence: Indices 185086 -- 185585
AGCGCGCGCTTACCATCTGGCCAACGGAAACACACAGGGCGCAATCCCGAATCCTCCTTGACGTT
TCCCCGAAGCCACACTTACTTATAGGGACCCGGGCGGCCCATTCCGTTTCTTCTGATAACCCGCC
AATTGCCCATAACTCTGAAGCCAGGGGTGCACCCGGCGGCACTGCAGGCTATACGGGCTAGTAAT
CGGTGGACGACAGACCGAAGGTCTAGTAAATAATATACATATATGGCAGAGTCTTCGGTAGACGA
ATGGATACCGGCGATCATTGTTGTATCTGGTTCGGGTGGTGCTCCTCCCGGTGTGGATCGGGCTG
AAAACCATGTGCGAAAAAGACCCCCTAGTTCCGCTAGATGCGTAATTAATCTTCCTCCGCTCTTC
TGTAGCTATTCGGTGGGTGGAAGACAAGACGATCTTTCTTTCTCTACTTGATCGTCTTCGAATTC
ACGGCAGGCAGGGGTCCGACCTGTGCAATTTCCGTTAGCCGCAGC
Right flanking sequence: Indices 185649 -- 186148
ATATGTGCGTGCATTATGGACTCATTCTGGAATCCGGAATGTAGTCCGTCGCCCACGGGTCAAGC
GTTGGCTGCCTTGGGGGTACTGGGCAGGTTGCATCCAGGTGGATTCCTCCGTCTTGTACGTGCAG
CCAAACTAGAGGGGGACTTGTCCCACCATGCTGGTGCTCCGTCCAACGGCGTTACAAGGGAAGGG
TCTCAAGCGCGCGCAAGTGGCATGTCTCCAAGTGGCATGTCTCACTTACCTGGAAATATCACTCG
AACACCATATGCAGAACTATTCCCAGTACAGGACCACTCGGGCATGCGCTCATGGATCCGAGGAG
GGCGAACCGGGAACCAACCACCGAGGAACTTCACTCGGAGAACAGCTTCTGAACAACCACGTCAG
GTTTCCAGCAGAGTCCATCGCTGGCTTGTGGGTGCGTCTGCTTCTTGGGTGTTGTGTTGTGCACC
ACACGGAATCAGCGCTACCTTTCTGGGGTGCAATCGTGGTTATGG
Found at i:185877 original size:15 final size:15
Alignment explanation
Indices: 185857--185886 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
185847 CAAGCGCGCG
185857 CAAGTGGCATGTCTC
1 CAAGTGGCATGTCTC
185872 CAAGTGGCATGTCTC
1 CAAGTGGCATGTCTC
185887 ACTTACCTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (15 bp):
CAAGTGGCATGTCTC
Left flanking sequence: Indices 185357 -- 185856
CGATCATTGTTGTATCTGGTTCGGGTGGTGCTCCTCCCGGTGTGGATCGGGCTGAAAACCATGTG
CGAAAAAGACCCCCTAGTTCCGCTAGATGCGTAATTAATCTTCCTCCGCTCTTCTGTAGCTATTC
GGTGGGTGGAAGACAAGACGATCTTTCTTTCTCTACTTGATCGTCTTCGAATTCACGGCAGGCAG
GGGTCCGACCTGTGCAATTTCCGTTAGCCGCAGCGCTGGGTCACCTTCCTTCATGCTGCTGGGTC
ACCTTCCTTCATGCTGGGTCACCTTCCTTCATATATGTGCGTGCATTATGGACTCATTCTGGAAT
CCGGAATGTAGTCCGTCGCCCACGGGTCAAGCGTTGGCTGCCTTGGGGGTACTGGGCAGGTTGCA
TCCAGGTGGATTCCTCCGTCTTGTACGTGCAGCCAAACTAGAGGGGGACTTGTCCCACCATGCTG
GTGCTCCGTCCAACGGCGTTACAAGGGAAGGGTCTCAAGCGCGCG
Right flanking sequence: Indices 185887 -- 186386
ACTTACCTGGAAATATCACTCGAACACCATATGCAGAACTATTCCCAGTACAGGACCACTCGGGC
ATGCGCTCATGGATCCGAGGAGGGCGAACCGGGAACCAACCACCGAGGAACTTCACTCGGAGAAC
AGCTTCTGAACAACCACGTCAGGTTTCCAGCAGAGTCCATCGCTGGCTTGTGGGTGCGTCTGCTT
CTTGGGTGTTGTGTTGTGCACCACACGGAATCAGCGCTACCTTTCTGGGGTGCAATCGTGGTTAT
GGTTAGAGGGTCACTGGGAGTATGGGGGCAAAGGCGACTCCGCGTCACAAGGGAGTGGCCCAGAT
TGCTGCTGGACATGGAACTGGGCGAAGTATCACTAGATCCAACTCAGACCGGTGCGCAAAGCATG
GCGTTTCCTAGCGGACGCTTTCCACATCCAGTCATCGAGTCGTGTCAACCGAGACTGTGGCGCTG
GGTGCAGGGGCAGCATCCTAGCCCGAGAGGTTGCTACGGAACTCG
Found at i:188584 original size:19 final size:19
Alignment explanation
Indices: 188560--188598 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
188550 TTGCGCCTCA
188560 CAGGTGAACTTACGGTAAC
1 CAGGTGAACTTACGGTAAC
188579 CAGGTGAACTTACGGTAAC
1 CAGGTGAACTTACGGTAAC
188598 C
1 C
188599 CGATCCCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21
Consensus pattern (19 bp):
CAGGTGAACTTACGGTAAC
Left flanking sequence: Indices 188060 -- 188559
AGGAGTGGGGTGTGTTACAGGAAGAGGAACCATTCACCGGAGGTTGAGTCCGACTACCCCATGCA
CAGATGTGCCCCTTTGGGATGTCCGGAGGGTTGGAAGTGTCTCACTCCAGATATATTGGTCTAAA
GCGGTTTCCGTTGAGTCGCCGCTGTGCCTTGTACTGTTCCGTCATTCATTGTTTAAGCACAAAGG
CAGGAGGAGCCAGCTTACTCACTCAGCACCACCACTGCTATTACGCATCATGTAAGGATGGTGGT
AAAGGAAGGATATCTGCAACCAAGATAGGGGATGGTGGGCGTCGTATGGGTGGGTGTGGGTTCTA
CCCCCCTGGTTTTGTGGCTTGCTCTGGCTACAGATCCTCGTTACATAAATCCCGATCATGGTACC
GCGTATAGAGGGACGAACCCACTGCCCGGTAAGTGGGGTTGCTGTGAATCCAGCTACTCGGCCCC
ACCGCTTGAGTCGGTCGGATACGCTATGTTGGGTGTTGCGCCTCA
Right flanking sequence: Indices 188599 -- 189098
CGATCCCTTGTAACGGCTGCCGTGGAAACACGGTTAGAACCATACGTCCTCCACGTGCGCGCTTC
AGAAGGACAACTCCCCACGAGGTAAGGATCCTCCGATTCGGAGCGGCTCACTACCATGCACAAAG
GGAAAGGCAACAAGTCGCTCTGCTCTCACCTGGGGCTCGCCGGGTAGCGTCATTGTATCTCCTCC
AGCTGGACTTGGAAGCCCGCTATATAAACATGATGTGCGGTGAACACCAATCCCGGTTAGCACGC
TTCTCGCTGGGCACACTGATTTCCCTTCCCTTCCCAGAGTGCGAGGTAAGGCAACCATCATTGTC
TCCCGGACGAGCTGCAAAGCGCAACATAACGGTAACCGTTCGCACGCTACGGGGATCAGGTGGGT
GGTATACACAATACTCCTCTTCGATTTCACACCGGGGTTGGGGCGGGTAAGTAAGTCAAGTTGTT
TGGCATCGGCACCTTCTTCTTTCTATATAGTTGTTGGACCGGGTG
Found at i:190635 original size:30 final size:30
Alignment explanation
Indices: 190601--190660 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
190591 TATCACTCCT
*
190601 TACTTCCCCCCTGACCCGCCTACCTATGTC
1 TACTTCCCCCCTGACCCGCCCACCTATGTC
*
190631 TACTTCCCCCCTGACCCGCCCGCCTATGTC
1 TACTTCCCCCCTGACCCGCCCACCTATGTC
190661 AGGTTTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.25
Consensus pattern (30 bp):
TACTTCCCCCCTGACCCGCCCACCTATGTC
Left flanking sequence: Indices 190101 -- 190600
AGATAACGCGCCAACTCTCCAGCCCACAACAGTGTTCTACGCTCGCTACGCGATAAAGCCTACCG
CCGGGTTCAAGTATATTGTTCACTGTTACATCACTCAATTCACCGAACGGGGAGTGAAGGCGTAA
ATGGAACTTCTATGGTGGGCGGCATATGTATGTATGTATGTATGTAGTTGGTCGAACAATCCCTC
ATAAGGGCATGCATATGGTTTACTTATTCCATCTAGTTACCCACGGCGCAGGAACAACAACTATA
TTGATGAGCTCCGTAGGGTGATGGCGAGTTTCCCCCTGCCCTGGTAACGTGCCAGAACGGATCGC
TTGGGCTTCCACTAGGAAGTGTTTCGATTATACCCGTAGCATCCGTGATTACTAGAGGGGAGGGT
TTAACGGTGCGACATACGCCAAGGACTCGTGGTTTCATATTCCATTCCAGCTGGTTGAGATACAC
ATGGGAAAGGTAGGACTATTTCCGTATACGAAAACTATCACTCCT
Right flanking sequence: Indices 190661 -- 191160
AGGTTTGTAAAACAGCCGGAGCTCTCTGTGCCAACTGAAGTTGCTACGGGTGGTATTACGTATAG
TTGGGGGGTCGGGTCGCGGTCGCTTCCAGAGTAGGAGAACGCCTTGATGTCCCCGACTGCAGTGG
GGTGAGGGCGGCATCAGTAAACTCCTCGAGCTAGCTCCCACCGCCATAACACCTTGCTTCACTCC
CCCCTTTATATCACTCACCGCCATAACACCTTGCTTCACTCCCCCCTTTTTCTTTATATACTATA
TATACGATACGCGTTGATATATACGATTGGGTCCGGTTCCAAGATACAGAGCTGGCTCTGCTTGC
CCCTCACACCCGTCTGCGGGATGCACGTAGGTGCGCCACCCGGAGGAACCTGACCCGCACAGGGA
AGGGTCAATGGGTCAGACCGATGCGCCAGTATCCACCCACATGTGGGCCCGGGTATACTCGTGGC
TCTTGAACGGAGCTGAGCACGTTGGCCCAGCCCCAAGCTCCGTGT
Found at i:192511 original size:30 final size:30
Alignment explanation
Indices: 192476--192532 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
192466 GTGTTGTCTA
192476 TATAGACCGGACAGGGCAGAAGCGGGTTGC
1 TATAGACCGGACAGGGCAGAAGCGGGTTGC
192506 TATAGACCGGACAGGGCAGAAGCGGGT
1 TATAGACCGGACAGGGCAGAAGCGGGT
192533 CGCCAACAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.40, T:0.12
Consensus pattern (30 bp):
TATAGACCGGACAGGGCAGAAGCGGGTTGC
Left flanking sequence: Indices 191976 -- 192475
ACTGGGCGCGTACTCAAGGGCCCATGGCCGGGGGTACTCGGGGTAAGGCCTTGGCGGTTCGATAG
ACAACACGGTAAGCCCAACGATGCGGTGAGACAGTTACCTCATAGTGCGACATGCGGCCCCGTAC
AACACGACAACTTCGAGCTTGTAGAGCTACCGCACTACACCGGCAACTACCTTACCCTCCCGAAC
CCCGCAGCACACTTAGTACGCAGCACACAGTTTATAATAGTGTGCGTTTCAGCATATACCCCGCA
GCACTGCGTTTATAATAGTGTGCGTTTCAGCAGTTTCTAATAGTGTTTATAATAGTGTGTGTTTC
AGCAGCATATATATGGATATGGTATGTACGCCGGCCGAAAGCTAGGGCTGGTTGTTGTTACAAGA
GGTGGGCTCGCCTACCTAGAGACATACGATCAACAAATATCTGCACATACTCTGAAGGCGCTCAG
AACAAACATCAGTTATGTGCCCGAAGGCGATCACCGTGTTGTCTA
Right flanking sequence: Indices 192533 -- 193032
CGCCAACAAGGAAGGCCCGCCGGAACGACGGACGCCTGCCGCGCCGAGGGTGGGGTTGGTCACGT
GCGGAATATGGTATGGTTGGTGTGGTAAAACGCGGTGGTTGGTATCAGGTTGCCCTCTCAATAAC
CATAACAGTGCCGGTTGCGGGGTGGGTTGGAACAAGTCCACTTATTTCCCCCCTACCAACCCCCG
CCCACGAGTATATGAACCGGGCGTGACCCCCGAAGCCATATATACAATACAGGGGCCCACCACGG
TTGTGCGATAAGCCCACCCAACCCCTTGTACTACGGGCGTGACCCCCTACCGGGTGGCCCCACAA
CATCTCGCGTCACGGAAACTTCGGGGTTATATAGAGAGGGCACATATCAGGTTGCCCTCTCAATA
ACCATAACAGTGCCCGTTGCGGTTGGTTTACATATCAAGGTTTAACGTCGCTGTTCAGTGAGGAA
TCAACAATGCCTTTCTTCAAGTGAGGTCAACTATCAACTGCACAC
Found at i:193254 original size:38 final size:38
Alignment explanation
Indices: 193200--193276 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
193190 AACTAGGGTA
*
193200 ACCGCTCCTCATGCACGCGTGACTCTTCCTTTTCCAAC
1 ACCGCTCCTCACGCACGCGTGACTCTTCCTTTTCCAAC
193238 ACCGCTCCTCACGCACGCGTGACTCTTCCTTTTCCAAC
1 ACCGCTCCTCACGCACGCGTGACTCTTCCTTTTCCAAC
193276 A
1 A
193277 GGTTTATGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.17, C:0.43, G:0.13, T:0.27
Consensus pattern (38 bp):
ACCGCTCCTCACGCACGCGTGACTCTTCCTTTTCCAAC
Left flanking sequence: Indices 192700 -- 193199
CCACTTATTTCCCCCCTACCAACCCCCGCCCACGAGTATATGAACCGGGCGTGACCCCCGAAGCC
ATATATACAATACAGGGGCCCACCACGGTTGTGCGATAAGCCCACCCAACCCCTTGTACTACGGG
CGTGACCCCCTACCGGGTGGCCCCACAACATCTCGCGTCACGGAAACTTCGGGGTTATATAGAGA
GGGCACATATCAGGTTGCCCTCTCAATAACCATAACAGTGCCCGTTGCGGTTGGTTTACATATCA
AGGTTTAACGTCGCTGTTCAGTGAGGAATCAACAATGCCTTTCTTCAAGTGAGGTCAACTATCAA
CTGCACACGATATGCTTGCTCAACACCCACTTGCCGCGTTGTAGAGCGGGTTACCGCTTGCCGGG
ATGGGGGCGGAATTATTGACGGTGGGCGCTTGCCGGGCTGTAACTAGTGGAACTGGAACAGTATC
TGCACGACAGTGATTCCAACGCCAGTTACACCGTAAACTAGGGTA
Right flanking sequence: Indices 193277 -- 193776
GGTTTATGTAGTACTAGAATCATCCCGCTTTATCCGGAGTAGGTAGGTTGTGATCGAGTAGGTAG
GTTCAGCACCCAGAAAACGAACTAACGGCGAAGTCAACACTGCGAAGCGGGAACCATACCGTTAC
TTGGTGGGCGGTTACAACCGGTTACGACAAACTAGCTCTCACCGTTACTTGGGGTTTCCGCACAT
ACGTCAAGGGGGATAACGTCGAGGGAACATTCCGAAACGTACGCGAGAAAGATATATGAAGACTA
TGCAACCTTCGTCAAGGAAACGAACTTGTTCAACGTATCGCCGGGAGCTTATCAGCCCTACCCTA
CCCGTATATCGCTGGGCGCTTATCAGCCCTACCCTACCCGTCATATATGGGGTTCAACCTTATCG
ATATACAACATATGATAACTACAAAGGACAACAACGGCCCCACCTCGTAACCCCACCTCGTAACT
GGAGCGCCGAAAGATTCGGGAAGCCGCCCCATCAAGTGGTATTGG
Found at i:193623 original size:36 final size:37
Alignment explanation
Indices: 193572--193647 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 37
193562 TTGTTCAACG
193572 TATCGCCGGGAGCTTATCAGCCCTACCCTACCCGT-A
1 TATCGCCGGGAGCTTATCAGCCCTACCCTACCCGTCA
* *
193608 TATCGCTGGGCGCTTATCAGCCCTACCCTACCCGTCA
1 TATCGCCGGGAGCTTATCAGCCCTACCCTACCCGTCA
193645 TAT
1 TAT
193648 ATGGGGTTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
36 33 0.89
37 4 0.11
ACGTcount: A:0.18, C:0.38, G:0.18, T:0.25
Consensus pattern (37 bp):
TATCGCCGGGAGCTTATCAGCCCTACCCTACCCGTCA
Left flanking sequence: Indices 193072 -- 193571
GGGTTACCGCTTGCCGGGATGGGGGCGGAATTATTGACGGTGGGCGCTTGCCGGGCTGTAACTAG
TGGAACTGGAACAGTATCTGCACGACAGTGATTCCAACGCCAGTTACACCGTAAACTAGGGTAAC
CGCTCCTCATGCACGCGTGACTCTTCCTTTTCCAACACCGCTCCTCACGCACGCGTGACTCTTCC
TTTTCCAACAGGTTTATGTAGTACTAGAATCATCCCGCTTTATCCGGAGTAGGTAGGTTGTGATC
GAGTAGGTAGGTTCAGCACCCAGAAAACGAACTAACGGCGAAGTCAACACTGCGAAGCGGGAACC
ATACCGTTACTTGGTGGGCGGTTACAACCGGTTACGACAAACTAGCTCTCACCGTTACTTGGGGT
TTCCGCACATACGTCAAGGGGGATAACGTCGAGGGAACATTCCGAAACGTACGCGAGAAAGATAT
ATGAAGACTATGCAACCTTCGTCAAGGAAACGAACTTGTTCAACG
Right flanking sequence: Indices 193648 -- 194147
ATGGGGTTCAACCTTATCGATATACAACATATGATAACTACAAAGGACAACAACGGCCCCACCTC
GTAACCCCACCTCGTAACTGGAGCGCCGAAAGATTCGGGAAGCCGCCCCATCAAGTGGTATTGGG
AATAGAACATGATAAACGGTGCGGCAGGTAGTTATGGTATCCCATGTTACGCCGTTACATACCCA
TATAACCGGGTAAGTAAGGTCTCCGTCCACTTACCATTCCGCCCACCGCCCCACCTCAATAACCT
GGCCTGTAACCCAACACGATACAACCGAGTTTCGGGGCGTAAAGCCCCCTCCTCTCACGGTAAAC
GGAGGAACGGGGAACTCGCGACAAAGCGCCGGTTTATGTATCAAGGTGGGAAGGCTACAAAGGGC
TGCTCCTCCTGGACGTTGTGTCCTGTTTCGATAGGGTACCGCACGGCAGACTTATAGCGGAACTT
CGTAACTACGGAATCGACCCGAGCGTCCCGCACGCTATAAAGCAA
Found at i:193722 original size:13 final size:13
Alignment explanation
Indices: 193704--193730 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
193694 ACAACAACGG
193704 CCCCACCTCGTAA
1 CCCCACCTCGTAA
193717 CCCCACCTCGTAA
1 CCCCACCTCGTAA
193730 C
1 C
193731 TGGAGCGCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.56, G:0.07, T:0.15
Consensus pattern (13 bp):
CCCCACCTCGTAA
Left flanking sequence: Indices 193204 -- 193703
CTCCTCATGCACGCGTGACTCTTCCTTTTCCAACACCGCTCCTCACGCACGCGTGACTCTTCCTT
TTCCAACAGGTTTATGTAGTACTAGAATCATCCCGCTTTATCCGGAGTAGGTAGGTTGTGATCGA
GTAGGTAGGTTCAGCACCCAGAAAACGAACTAACGGCGAAGTCAACACTGCGAAGCGGGAACCAT
ACCGTTACTTGGTGGGCGGTTACAACCGGTTACGACAAACTAGCTCTCACCGTTACTTGGGGTTT
CCGCACATACGTCAAGGGGGATAACGTCGAGGGAACATTCCGAAACGTACGCGAGAAAGATATAT
GAAGACTATGCAACCTTCGTCAAGGAAACGAACTTGTTCAACGTATCGCCGGGAGCTTATCAGCC
CTACCCTACCCGTATATCGCTGGGCGCTTATCAGCCCTACCCTACCCGTCATATATGGGGTTCAA
CCTTATCGATATACAACATATGATAACTACAAAGGACAACAACGG
Right flanking sequence: Indices 193731 -- 194230
TGGAGCGCCGAAAGATTCGGGAAGCCGCCCCATCAAGTGGTATTGGGAATAGAACATGATAAACG
GTGCGGCAGGTAGTTATGGTATCCCATGTTACGCCGTTACATACCCATATAACCGGGTAAGTAAG
GTCTCCGTCCACTTACCATTCCGCCCACCGCCCCACCTCAATAACCTGGCCTGTAACCCAACACG
ATACAACCGAGTTTCGGGGCGTAAAGCCCCCTCCTCTCACGGTAAACGGAGGAACGGGGAACTCG
CGACAAAGCGCCGGTTTATGTATCAAGGTGGGAAGGCTACAAAGGGCTGCTCCTCCTGGACGTTG
TGTCCTGTTTCGATAGGGTACCGCACGGCAGACTTATAGCGGAACTTCGTAACTACGGAATCGAC
CCGAGCGTCCCGCACGCTATAAAGCAATTCCTGACTACACCAATAAGGGACGCGCACGGACGGGA
CTTTACTTGTACGGATAGGGAGGGGCATCCCTCAGGGCAGCTGTG
Found at i:194282 original size:27 final size:27
Alignment explanation
Indices: 194244--194297 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
194234 CGCCCATACT
*
194244 GCAACATCTCTTCCTCAACTCTGTAGA
1 GCAACATCTCTTCCTCAACTCCGTAGA
*
194271 GCAAGATCTCTTCCTCAACTCCGTAGA
1 GCAACATCTCTTCCTCAACTCCGTAGA
194298 TTGGAAGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.28
Consensus pattern (27 bp):
GCAACATCTCTTCCTCAACTCCGTAGA
Left flanking sequence: Indices 193744 -- 194243
GATTCGGGAAGCCGCCCCATCAAGTGGTATTGGGAATAGAACATGATAAACGGTGCGGCAGGTAG
TTATGGTATCCCATGTTACGCCGTTACATACCCATATAACCGGGTAAGTAAGGTCTCCGTCCACT
TACCATTCCGCCCACCGCCCCACCTCAATAACCTGGCCTGTAACCCAACACGATACAACCGAGTT
TCGGGGCGTAAAGCCCCCTCCTCTCACGGTAAACGGAGGAACGGGGAACTCGCGACAAAGCGCCG
GTTTATGTATCAAGGTGGGAAGGCTACAAAGGGCTGCTCCTCCTGGACGTTGTGTCCTGTTTCGA
TAGGGTACCGCACGGCAGACTTATAGCGGAACTTCGTAACTACGGAATCGACCCGAGCGTCCCGC
ACGCTATAAAGCAATTCCTGACTACACCAATAAGGGACGCGCACGGACGGGACTTTACTTGTACG
GATAGGGAGGGGCATCCCTCAGGGCAGCTGTGTCTCGCCCATACT
Right flanking sequence: Indices 194298 -- 194797
TTGGAAGAACAAGGGACTTCTTTACTACCTCCGGTATGCAGATGACCGTTTCCTTGGACTTACGT
CGGCAGGGGGAGAGGCAGAGGCCAATAGGCAGGTAGCGCTACTCGCTGACTTCGGGCTTGAATGC
AAGTTCCAGATCCTTGGCTTTAGGGAGGTTGGGAAGCACGTGGGCGTTTACCGGGGCGGGTTCAG
ATATTCGTCCCCCACTGACGGCAACTTGTTGGTGGGAAGCTCGCTACTGGAACAAACCCCCAGCC
CATGTAGCGGGCGACACCCCAGCATCAGATATTTCGTATGAATCGGGTCACGCGGCTGCCGGCTA
CCGTAACAACATAACCAGTTGTATCTGCACAAACCCTTATGGTTGTATCAGGGTGGTCGGGTTCG
CCCGTTGCTTCTTCGAACGGCTGGCCTGTTCCAGGCTGCTCGGGGTTGTATTGAGTGAGGTTATC
AGCCCGCAGTTTCATGCGGCGTTGCATAATAGAGAATCCGGAACT
Found at i:195398 original size:18 final size:18
Alignment explanation
Indices: 195365--195399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
195355 TACTACGTAT
*
195365 ACGTAAACTACAACTACA
1 ACGTAAACCACAACTACA
*
195383 ACGTAAACCACGACTAC
1 ACGTAAACCACAACTAC
195400 CGTTTATTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.31, G:0.09, T:0.14
Consensus pattern (18 bp):
ACGTAAACCACAACTACA
Left flanking sequence: Indices 194865 -- 195364
GTTGTCGCGAGTTCTGCGGCCGGACTGGGTAGCGTTGTCCGGTGGGACAGATATATACGAAAGTG
TATGGGATGAAACCGGCACCGCTTTGTTGGCCGTACCGTGTTCCGCTACGCGACACTAAGGGAAA
GGGGGCAACATCGACGGCGGCGTATCGTATCGTAGTACGGGGGGTACCCAACCGCGCCGGTACAT
ACGCCCCCCTCGCATACCCAGTAACTTACCCAACCCCGATACCTAGTTCGAAAGCGAATTCTCTT
ATCTAGTGAATGCGGCGTTAGATACCTTCACTAGATGTGAGCTCACTTATCGAGGTGTGCCCCAC
CCCACCCCACCGTGATACGCCGGTCTTGGACTCACCTTTCCTCCCCTCTTCGCGGGCGTACTCCT
CCTTGAGCGTGTTCGGGGCAATGTGAGCCATGTTGTACACGAGGGCGAAGCGTCGTGTTGTAGGA
GAACACCAGTGAGCTTTCGCGCATGCTACTACTACTACTACGTAT
Right flanking sequence: Indices 195400 -- 195899
CGTTTATTGACGGACGGTGGCCGCTCGCTGCGGGCGGCGTGCGTGCGTGCGGTTATATGCTGGTG
GGGTGGGTGGGTGGTCGGTGCTGCTAGTTCCGGATAAAGGCGTATGTAGTATCCAATTGAATCAA
TCTTCAAGAGAGACGCGGACACACAGTTGGTACGGTACAGAAGCGCCTCCGCCATGTGTTTGTTT
CTTTCATGATGCAACCCCGCGCCACAACGATGGGATGGGTTTGTTGGATTTACTAGCACACCTTT
CTGTAACGGCGAGGTACGAACATTGATTGAGCCAGTCCCGGGGTGGGGGACATCGAAGCGTGAAC
CCCGTCAACACACACACTTTCACACATCCAATCACGAACATGATGTGGGTGAGTGTGCTTCCATA
TGTGCTGGCAACTATCCATCCTTTATGCATGTACGGTGTCACAAATGACCTTGTCTCTGACACCA
CCGATCAACAGCTTCTGGTTTCACATTCGGATTGTGCGTGTTTCT
Found at i:197510 original size:26 final size:26
Alignment explanation
Indices: 197467--197598 Score: 120
Period size: 26 Copynumber: 4.9 Consensus size: 26
197457 GCGTTACTCG
*
197467 TGCCGTGAACCGGTCACTCCTCTACA
1 TGCCGTGAAACGGTCACTCCTCTACA
* * * *
197493 TGCGGTGAAACGGGCACTCCTCCACG
1 TGCCGTGAAACGGTCACTCCTCTACA
*
197519 TGCCGTGAACCGGTCACTCCTCTACA
1 TGCCGTGAAACGGTCACTCCTCTACA
* * * *
197545 TGCCGTGCCGTGAAACCGCCAATCCTCTACG
1 -----TGCCGTGAAACGGTCACTCCTCTACA
*
197576 TGCCGTGAAACGGACACTCCTCT
1 TGCCGTGAAACGGTCACTCCTCT
197599 GGCGGAAACC
Statistics
Matches: 83, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
26 62 0.75
31 21 0.25
ACGTcount: A:0.20, C:0.37, G:0.23, T:0.20
Consensus pattern (26 bp):
TGCCGTGAAACGGTCACTCCTCTACA
Left flanking sequence: Indices 196967 -- 197466
CCCGGCGGGGGCGTCCGTCCTTTGAAAAAGAAAACGCTCCGAACTCAGTAAGCCGAAACCTGGGG
AGGGGATACCCCCCGTACGTGTGGTGGGAGGGATAGTTTACGGAACCATGAGCGTGCGAGTTCGA
ACCCGCGGCATCGAAACCAGTAGATCCGGACCTTGCAGTTTGAATCAGCGACCGTGTGAAGGTAT
CGAACCAGATACTACCTACAAACGGACATACGCTAGTGAGGGGCCCTCGATGGAATCTCCGGCCC
TCAGCACTCACCCTCGATCCGAGATCGGCGATCTGATCGACGGCGGGAATACTGTATTGGTAGAG
CCTTCCCCCGGTATGGCGGACACCCACAACTCTGATTCTATACCTTACTCTGGACTCTAGAGACA
GGTGTAGTAGAGCGATAGAATACTGAATGCGTTATACACAATACCGGCAACAAGGTATGAAATGA
ACGGTACCCGTGATGTACAGGTAACCGCTTCGCGGGCGTTACTCG
Right flanking sequence: Indices 197599 -- 198098
GGCGGAAACCGCGAAGCGACGGAAACACGTAGACGAAGACGATAGGAGTAAAGCGAATCATGTGT
GTTTGCTTGCATCGATATGGGGAATTGGGGACATCGAACCTGGCTCTGTGTCTACCCCATCTTGA
AACAGCTTCCGGTCAATATCATATGGTTGTACACAAGCTGGAACTGTAGCCCGTTACATGCGCCG
AATCAGCCTATATCACAACCGAACTGAACCAACAACTATTCCCCCTAACACCGTGTTGGGGAAGG
GAAGGGGTACCCCCGAATACGGGCTTAGGTTCCAACTGTTTCCGGCTGTTGTTGTTGTGTGTTTA
TAGTATTGTACTTGTGTTGTGTTGTGTTGAGGGGTGGGTAAGCGCGAGATATATGGCCCTACCCG
TAGTGCCAACGACCTAGTTCTGTTCCACCGGCAGAGGATCACGTTGTAAATAACGCTATATTTCG
TTAGTACCCGCGGGCATATGTAGCAATCAATAACGCTATATTTCG
Found at i:197594 original size:57 final size:52
Alignment explanation
Indices: 197465--197598 Score: 169
Period size: 57 Copynumber: 2.5 Consensus size: 52
197455 GGGCGTTACT
* * *
197465 CGTGCCGTGAACCGGTCACTCCTCTACATGCGGTGAAACGGGCACTCCTCCA
1 CGTGCCGTGAACCGGTCACTCCTCTACATGCGGTGAAACCGCCAATCCTCCA
*
197517 CGTGCCGTGAACCGGTCACTCCTCTACATGCCGTGCCGTGAAACCGCCAATCCTCTA
1 CGTGCCGTGAACCGGTCACTCCTCTACATG-C--G--GTGAAACCGCCAATCCTCCA
* *
197574 CGTGCCGTGAAACGGACACTCCTCT
1 CGTGCCGTGAACCGGTCACTCCTCT
197599 GGCGGAAACC
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
52 30 0.42
53 1 0.01
55 1 0.01
57 39 0.55
ACGTcount: A:0.19, C:0.37, G:0.23, T:0.20
Consensus pattern (52 bp):
CGTGCCGTGAACCGGTCACTCCTCTACATGCGGTGAAACCGCCAATCCTCCA
Left flanking sequence: Indices 196965 -- 197464
AGCCCGGCGGGGGCGTCCGTCCTTTGAAAAAGAAAACGCTCCGAACTCAGTAAGCCGAAACCTGG
GGAGGGGATACCCCCCGTACGTGTGGTGGGAGGGATAGTTTACGGAACCATGAGCGTGCGAGTTC
GAACCCGCGGCATCGAAACCAGTAGATCCGGACCTTGCAGTTTGAATCAGCGACCGTGTGAAGGT
ATCGAACCAGATACTACCTACAAACGGACATACGCTAGTGAGGGGCCCTCGATGGAATCTCCGGC
CCTCAGCACTCACCCTCGATCCGAGATCGGCGATCTGATCGACGGCGGGAATACTGTATTGGTAG
AGCCTTCCCCCGGTATGGCGGACACCCACAACTCTGATTCTATACCTTACTCTGGACTCTAGAGA
CAGGTGTAGTAGAGCGATAGAATACTGAATGCGTTATACACAATACCGGCAACAAGGTATGAAAT
GAACGGTACCCGTGATGTACAGGTAACCGCTTCGCGGGCGTTACT
Right flanking sequence: Indices 197599 -- 198098
GGCGGAAACCGCGAAGCGACGGAAACACGTAGACGAAGACGATAGGAGTAAAGCGAATCATGTGT
GTTTGCTTGCATCGATATGGGGAATTGGGGACATCGAACCTGGCTCTGTGTCTACCCCATCTTGA
AACAGCTTCCGGTCAATATCATATGGTTGTACACAAGCTGGAACTGTAGCCCGTTACATGCGCCG
AATCAGCCTATATCACAACCGAACTGAACCAACAACTATTCCCCCTAACACCGTGTTGGGGAAGG
GAAGGGGTACCCCCGAATACGGGCTTAGGTTCCAACTGTTTCCGGCTGTTGTTGTTGTGTGTTTA
TAGTATTGTACTTGTGTTGTGTTGTGTTGAGGGGTGGGTAAGCGCGAGATATATGGCCCTACCCG
TAGTGCCAACGACCTAGTTCTGTTCCACCGGCAGAGGATCACGTTGTAAATAACGCTATATTTCG
TTAGTACCCGCGGGCATATGTAGCAATCAATAACGCTATATTTCG
Found at i:198101 original size:45 final size:45
Alignment explanation
Indices: 198037--198126 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
198027 TCACGTTGTA
198037 AATAACGCTATATTTCGTTAGTACCCGCGGGCATATGTAGCAATC
1 AATAACGCTATATTTCGTTAGTACCCGCGGGCATATGTAGCAATC
198082 AATAACGCTATATTTCGTTAGTACCCGCGGGCATATGTAGCAATC
1 AATAACGCTATATTTCGTTAGTACCCGCGGGCATATGTAGCAATC
198127 GTCAATCACA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (45 bp):
AATAACGCTATATTTCGTTAGTACCCGCGGGCATATGTAGCAATC
Left flanking sequence: Indices 197537 -- 198036
CCTCTACATGCCGTGCCGTGAAACCGCCAATCCTCTACGTGCCGTGAAACGGACACTCCTCTGGC
GGAAACCGCGAAGCGACGGAAACACGTAGACGAAGACGATAGGAGTAAAGCGAATCATGTGTGTT
TGCTTGCATCGATATGGGGAATTGGGGACATCGAACCTGGCTCTGTGTCTACCCCATCTTGAAAC
AGCTTCCGGTCAATATCATATGGTTGTACACAAGCTGGAACTGTAGCCCGTTACATGCGCCGAAT
CAGCCTATATCACAACCGAACTGAACCAACAACTATTCCCCCTAACACCGTGTTGGGGAAGGGAA
GGGGTACCCCCGAATACGGGCTTAGGTTCCAACTGTTTCCGGCTGTTGTTGTTGTGTGTTTATAG
TATTGTACTTGTGTTGTGTTGTGTTGAGGGGTGGGTAAGCGCGAGATATATGGCCCTACCCGTAG
TGCCAACGACCTAGTTCTGTTCCACCGGCAGAGGATCACGTTGTA
Right flanking sequence: Indices 198127 -- 198626
GTCAATCACAACACCGTTGACGCCCCACCGTCAATAACTAACGCCAGAGTGTCCACTGGAACACA
ATAAGTGTGTTCCGAAAAACACCATTCACAGTAGTTCTATATGTGGTGTGGGGGCTCGCTCGATC
GCCCGAAAGCTTTATGCTCGGTAGCCCGGGGATACCAGTCCCCGAAATTGTTCCGTGATCTATAG
AGTCGGGAAAGGGTAAGTGATTCTGGATATATGCCCTACATAACCCTTCCATCGGTCAGGCTGGC
CCAACATGGGGAACTGTGGGGGAAAGGGGGTACCCCCCGTACAAGGCATCGGTCGACCCACCCTG
TTCAATAAAGTCTGAACCCCGCATATAAACCCCGCATATATTATATAATAGGAGTGAGAGAAATC
CTGGTACCGGTGTGTGCATGGAAAGGCATCTTGTTTGTTACCATACCATATTGACGCACGCACGA
CTGCTGACGATATAACTGAAACCTGTGACGCACGCACGACTGCTT
Found at i:198484 original size:13 final size:13
Alignment explanation
Indices: 198466--198491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
198456 ATAAAGTCTG
198466 AACCCCGCATATA
1 AACCCCGCATATA
198479 AACCCCGCATATA
1 AACCCCGCATATA
198492 TTATATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.08, T:0.15
Consensus pattern (13 bp):
AACCCCGCATATA
Left flanking sequence: Indices 197966 -- 198465
CGCGAGATATATGGCCCTACCCGTAGTGCCAACGACCTAGTTCTGTTCCACCGGCAGAGGATCAC
GTTGTAAATAACGCTATATTTCGTTAGTACCCGCGGGCATATGTAGCAATCAATAACGCTATATT
TCGTTAGTACCCGCGGGCATATGTAGCAATCGTCAATCACAACACCGTTGACGCCCCACCGTCAA
TAACTAACGCCAGAGTGTCCACTGGAACACAATAAGTGTGTTCCGAAAAACACCATTCACAGTAG
TTCTATATGTGGTGTGGGGGCTCGCTCGATCGCCCGAAAGCTTTATGCTCGGTAGCCCGGGGATA
CCAGTCCCCGAAATTGTTCCGTGATCTATAGAGTCGGGAAAGGGTAAGTGATTCTGGATATATGC
CCTACATAACCCTTCCATCGGTCAGGCTGGCCCAACATGGGGAACTGTGGGGGAAAGGGGGTACC
CCCCGTACAAGGCATCGGTCGACCCACCCTGTTCAATAAAGTCTG
Right flanking sequence: Indices 198492 -- 198991
TTATATAATAGGAGTGAGAGAAATCCTGGTACCGGTGTGTGCATGGAAAGGCATCTTGTTTGTTA
CCATACCATATTGACGCACGCACGACTGCTGACGATATAACTGAAACCTGTGACGCACGCACGAC
TGCTTTATGTTATTATGAAACCTGGGCGGCCTGCTTCTATCTCTCTAGATCTGGTGTTTGTCTGG
TCCTGTACGAAATCCTGGTAACGGCATTCCATGCTGCTCTGTGCGAACATGTCGAGGTATCTCGT
TACGGCGTGAAGGGGTATGGTATCCATCCTGCTTGATTCATTGATTGAAAGGCATCCAGAAGGAG
GGCGGGACGGTGCACGTAAGTCTCGGTACCCAGCTTCGCCGCTTATGGGTGTGGGGGGAGAAGTA
TACCACGCCGCCCCCCGAATACGGCAGCGATCTATCGCGCAAGCTTGTCCGCTGCTTGTTGCTTG
TCCGTCTGCTGGGCCAACAAAGAGAGATTTCCAGTGTCGATCTGG
Found at i:199943 original size:21 final size:21
Alignment explanation
Indices: 199918--199958 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
199908 TACTGCGTCA
199918 TATATGCTGCGTGCGTGCGGT
1 TATATGCTGCGTGCGTGCGGT
199939 TATATGCTGCGTGCGTGCGG
1 TATATGCTGCGTGCGTGCGG
199959 GGGGGCGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.10, C:0.20, G:0.39, T:0.32
Consensus pattern (21 bp):
TATATGCTGCGTGCGTGCGGT
Left flanking sequence: Indices 199418 -- 199917
GTCCGCCAACACCCTTATGTAGTATGTAGCGGGGCTGGTCTTCCATCAATCAATCTACCTGGGCT
GGGCCTCTATCGTGCATATATGTTGGTTATGTCTTTCTGTTCGTGATGTCTGACCGTTAGTGCTA
TGGGTATCGAATGTAGATTCCGGAAGTTGGCCGGTTGGCAGGCAGGTTAGGCATATATGTTGGTG
CGTTGATCACGGAATGTTGTTTCTGTCACTGGATGTCACCGACTGGATTTCATAAAATATTGGTA
ATTGAACTCTGGTCATTCTAATAGTACCTGTCTAGTAACGACGCGGTCTTTCCTTACGGAACACT
GGCTTAGTGGGGTAATAGAACCGAACCATGGCCCTTGTACGGAGGCCCCACAGTTCGAAACGAGT
ACTTGTCTAGTAACCACGCAGTCTAGCCTGACGAACCTGCTGCACCGGTCTTCTCTTCCAATGGA
TTCTTCTTTACTTGTACGCCTACCCTACCCTACCCTACTGCGTCA
Right flanking sequence: Indices 199959 -- 200458
GGGGGCGGAGTGCGATCTCCCCCTCGCCTATACAAGGTGGACTGACTCATTCTCGTTATCTCCCC
GGTCTACCTAAGAAGATTCGGGTTGGGGATGCAGGTTGATAGACCACTACGCTGGGGGGGATGCA
GGTTGATAGATCACTCCTCAACTTCGTACTGGCTTACTCACTCTTCTGATAGATCACCCAACAAC
TGCGTCAATATGGTGGTATGGTATGGTGGTACGCGACCAACTACCTGGGCAACTACCGGGGTGTG
GGGGAGATATTTGTGCTTACCCCGAATACGAAGTGCCCGAGTACGCCTACATGAGGTGAGGTGCC
CCGAGTACGCCTACATGAGGTGAGGTGCCCCGTTACGTACGACGCCGCCCCCCGGGATACGGCTT
TTGGAATTCCCAGAGTACGTGTCGTCGTACCTGTCTTTCCTGACGGACCACTAGTTGGGTGCTAC
ATAGAACCATGGGTTTTTCGGTTGTCGCGAACTATATACGGTACG
Found at i:200292 original size:29 final size:29
Alignment explanation
Indices: 200254--200315 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
200244 ATACGAAGTG
200254 CCCGAGTACGCCTACATGAGGTGAGGTGC
1 CCCGAGTACGCCTACATGAGGTGAGGTGC
200283 CCCGAGTACGCCTACATGAGGTGAGGTGC
1 CCCGAGTACGCCTACATGAGGTGAGGTGC
200312 CCCG
1 CCCG
200316 TTACGTACGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (29 bp):
CCCGAGTACGCCTACATGAGGTGAGGTGC
Left flanking sequence: Indices 199754 -- 200253
GTAATAGAACCGAACCATGGCCCTTGTACGGAGGCCCCACAGTTCGAAACGAGTACTTGTCTAGT
AACCACGCAGTCTAGCCTGACGAACCTGCTGCACCGGTCTTCTCTTCCAATGGATTCTTCTTTAC
TTGTACGCCTACCCTACCCTACCCTACTGCGTCATATATGCTGCGTGCGTGCGGTTATATGCTGC
GTGCGTGCGGGGGGGCGGAGTGCGATCTCCCCCTCGCCTATACAAGGTGGACTGACTCATTCTCG
TTATCTCCCCGGTCTACCTAAGAAGATTCGGGTTGGGGATGCAGGTTGATAGACCACTACGCTGG
GGGGGATGCAGGTTGATAGATCACTCCTCAACTTCGTACTGGCTTACTCACTCTTCTGATAGATC
ACCCAACAACTGCGTCAATATGGTGGTATGGTATGGTGGTACGCGACCAACTACCTGGGCAACTA
CCGGGGTGTGGGGGAGATATTTGTGCTTACCCCGAATACGAAGTG
Right flanking sequence: Indices 200316 -- 200815
TTACGTACGACGCCGCCCCCCGGGATACGGCTTTTGGAATTCCCAGAGTACGTGTCGTCGTACCT
GTCTTTCCTGACGGACCACTAGTTGGGTGCTACATAGAACCATGGGTTTTTCGGTTGTCGCGAAC
TATATACGGTACGGTACGGAAGCCCCTTACCGAAGAGCTACACTTCGTACATATGATACTGCTGC
TGAATTGTCTCCGTAACAGTACAGATATCCACCCACTGCCCGTATCAATCAATCATGACTGTGAA
ACCCATACATTAATCCCCGGGACCGCCGCAGTACCACGATCGAAGATCCGATCACAACAACACGA
AGCTTCTCTCGTGCTCCCCTTCTATCCGCAGCCCCCAGCCCGGCTATCACCGCACGCTGCGGATT
CCCCGTTAGTGTTACGAACATATATGGGTGCCGGTACCTCTAGATCCGTTAGATAGACCGTTTAG
CGAAACGCAACCGTATATAGAAAACATCCTGCTACGAGCCGGGGT
Found at i:202732 original size:38 final size:38
Alignment explanation
Indices: 202681--202757 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
202671 TCAGGCCTTG
202681 AGCTTTTAAGTACAATCCAAGATCTGTCTTCCCCCCAC
1 AGCTTTTAAGTACAATCCAAGATCTGTCTTCCCCCCAC
202719 AGCTTTTAAGTACAATCCAAGATCTGTCTTCCCCCCAC
1 AGCTTTTAAGTACAATCCAAGATCTGTCTTCCCCCCAC
202757 A
1 A
202758 TACTTGTTCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.27, C:0.34, G:0.10, T:0.29
Consensus pattern (38 bp):
AGCTTTTAAGTACAATCCAAGATCTGTCTTCCCCCCAC
Left flanking sequence: Indices 202181 -- 202680
CTTGAGGTTTCCCGAAACGAGGGACTCAAGTGTGGCGGGTCCCTTTCGTCTAGTGGTTAGGACAT
CGTCTTTTCATGTCGAAGACACGGGTTCGATTCCCGTAGGGGATACCATACATAAACCAACAAGA
GTGAGGAGGCGGGGGCCGCACACACGTACGATGGAAACCGCTGCAGTGAAGTCAGATCAGCTCCG
TGTAGCCCGACGTCAACCTCCCGATATCGGTCGGTCAGCGCACGCCCCTATCACGTGCTACCCGA
TATGCCGCTTGTTTCCATATAGATCTCCCCTCCCCCCTCCCTCCTTATATGGGTTCGGTAACGGT
AACGACCGAGATGGTTCCGTTGCTTGTTAAACCGCAACAACAACTACGTACGCAACCCCCCGAAC
CCTGGTGGGCATAGGCATATATGTACGGGTGGTAAGGGGTCCTGTAGCCGGATCTATCGGTATAC
GCTTTATAGCTTATCCAGCAGCATCAGACCAGTCATCAGGCCTTG
Right flanking sequence: Indices 202758 -- 203257
TACTTGTTCCCCGGGTAACTGCGTGTGGTTCACGAAGCCCTTGTACGGGGGACTGATCACACCCA
AGGGGACTGACCGTAAACCCGCCCACAGCGACAGGGTGACTCCGTTGGGTTGTCTGTTGTTCACT
GTGCAACCAACAACAACTACATAGGCGGGGCGGGGGGTGCCGCTACGTATCCACGTGCAGACCAG
CACGTAACCACAGTCGACTGTTACAAGGTGACAGGGTATTATAAACGCCACGTGATTACCCATAC
GCTGCTCCTACTGGAGGACGTCAGGAACAGATTCTATGAAGCGTTATGTGCGCCGGTTACTTCCA
TGCGCCGCCCCATGTAGCCGGTATCGGGGTTGTGGGTTGTTTATGGCCCCGTCACGCCCGTTTAT
ATAGAGGTAACAAGCCTATGTGGCCGGTGGATCGTAGCCGGGTAGGGCCCACCCCACTACCGTAC
AATACGCCCACCATCCCCTGTCGCCATATGGTATGCTTGTTGTGG
Found at i:203787 original size:40 final size:40
Alignment explanation
Indices: 203732--203815 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
203722 TACACATGTT
203732 GTATCCCCACTCTCGCGCATGGTGAATAGCCAGCCCCGCC
1 GTATCCCCACTCTCGCGCATGGTGAATAGCCAGCCCCGCC
203772 GTATCCCCACTCTCGCGCATGGTGAATAGCCAGCCCCGCC
1 GTATCCCCACTCTCGCGCATGGTGAATAGCCAGCCCCGCC
203812 GTAT
1 GTAT
203816 ATAAACGCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.18, C:0.40, G:0.23, T:0.19
Consensus pattern (40 bp):
GTATCCCCACTCTCGCGCATGGTGAATAGCCAGCCCCGCC
Left flanking sequence: Indices 203232 -- 203731
GTCGCCATATGGTATGCTTGTTGTGGCCGGGGGCCCACCCACACCGCTAACCCACACCGCGTTAA
TACGGTAGCGCCCACCCAACCCACTACAATACTCGTTACCCGCCCGCCATATACCACCCACCGAG
TACTTGGGGGTAATCGATTTCACACCGGGGTTGGGGCTGACGAGCAGTTACGTAAAGAGGGAAGG
GGTTGGGGCAGGTTCGGGGTTGGAATTTGATTTGTTGGATCCAGATACGATGTTGGTATTCGCAT
AATCCCCACGACCCAACCTCGGCACGCCCACGACGCTTTGTTGGCTCCTGATACTAACTTGTATA
TATACTAATAAGGGGTTCGTGATATCGCCCATATAATCGTCAGCGGGGTTGGGCGGGGGTCCTTA
GTTAGTTGTGCGGGAGTTGGATGCAGATACGATGTTGGGGTTCGAAGGGGTTGGGTTGGGGCTGC
TCTTGGCGAACAACCCCGCCACGTGCGGCTCTCCGTACACATGTT
Right flanking sequence: Indices 203816 -- 204315
ATAAACGCACACCACCACCACCACCACCACCTCACCTCACCGCCACCGCACCTCACCGCCACCTC
ATCAACATAGAAACGAAACCTTGTCGAAACCTTGAAACGAAACCAATTACATGATGAGCTATCCC
TCACCGTCAATAACGATGCCGGGAGCAGCGTAAATACGCTTCAGCAATGTAACGCAGACTCTCTA
TTGCTATGTCTACCCTGCCCACGATCAAGCGCAGCACGCCAGCGACCCCGCCTGTCTCAAGCGGC
GCTCACGACACCAGAGATACAAGTAAGCTTGTCTAGAGACCGTCTTTACGTATCTGCGGTGTTGT
GCTGTAACTAGATAAGGTACTGAAAGCCATCTCCCCTCTAGGGTAACGGGCGAACCTTGACAAGA
TTGAGTAAGGTGGGTCAATCCGCAGTATGGGTGGGGGCGAGCGGCATGAAACGGCGTTTGCTTTC
TAGTCACTTTCGCAGATCCCTGTATCTGATCACATAGGGTCCTCG
Found at i:203861 original size:16 final size:16
Alignment explanation
Indices: 203837--203881 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
203827 CCACCACCAC
*
203837 CACCACCACCTCACCT
1 CACCGCCACCTCACCT
*
203853 CACCGCCACCGCACCT
1 CACCGCCACCTCACCT
203869 CACCGCCACCTCA
1 CACCGCCACCTCA
203882 TCAACATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.22, C:0.62, G:0.07, T:0.09
Consensus pattern (16 bp):
CACCGCCACCTCACCT
Left flanking sequence: Indices 203337 -- 203836
CGCCCGCCATATACCACCCACCGAGTACTTGGGGGTAATCGATTTCACACCGGGGTTGGGGCTGA
CGAGCAGTTACGTAAAGAGGGAAGGGGTTGGGGCAGGTTCGGGGTTGGAATTTGATTTGTTGGAT
CCAGATACGATGTTGGTATTCGCATAATCCCCACGACCCAACCTCGGCACGCCCACGACGCTTTG
TTGGCTCCTGATACTAACTTGTATATATACTAATAAGGGGTTCGTGATATCGCCCATATAATCGT
CAGCGGGGTTGGGCGGGGGTCCTTAGTTAGTTGTGCGGGAGTTGGATGCAGATACGATGTTGGGG
TTCGAAGGGGTTGGGTTGGGGCTGCTCTTGGCGAACAACCCCGCCACGTGCGGCTCTCCGTACAC
ATGTTGTATCCCCACTCTCGCGCATGGTGAATAGCCAGCCCCGCCGTATCCCCACTCTCGCGCAT
GGTGAATAGCCAGCCCCGCCGTATATAAACGCACACCACCACCAC
Right flanking sequence: Indices 203882 -- 204381
TCAACATAGAAACGAAACCTTGTCGAAACCTTGAAACGAAACCAATTACATGATGAGCTATCCCT
CACCGTCAATAACGATGCCGGGAGCAGCGTAAATACGCTTCAGCAATGTAACGCAGACTCTCTAT
TGCTATGTCTACCCTGCCCACGATCAAGCGCAGCACGCCAGCGACCCCGCCTGTCTCAAGCGGCG
CTCACGACACCAGAGATACAAGTAAGCTTGTCTAGAGACCGTCTTTACGTATCTGCGGTGTTGTG
CTGTAACTAGATAAGGTACTGAAAGCCATCTCCCCTCTAGGGTAACGGGCGAACCTTGACAAGAT
TGAGTAAGGTGGGTCAATCCGCAGTATGGGTGGGGGCGAGCGGCATGAAACGGCGTTTGCTTTCT
AGTCACTTTCGCAGATCCCTGTATCTGATCACATAGGGTCCTCGTCGATAAGGTAGTCGGAGCAG
AAAACTCCGTAAGACTCCAACAGGGACAGCGAGAGCGTTATGCCT
Found at i:205615 original size:23 final size:23
Alignment explanation
Indices: 205585--205630 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
205575 CAGTTACTAG
205585 GCCAGATATACGCGTGATGAGAT
1 GCCAGATATACGCGTGATGAGAT
205608 GCCAGATATACGCGTGATGAGAT
1 GCCAGATATACGCGTGATGAGAT
205631 AGGATCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (23 bp):
GCCAGATATACGCGTGATGAGAT
Left flanking sequence: Indices 205085 -- 205584
TCGTCGGCCGAGAGGGAGACCAACCGCAACTGTTGACGCCGTTACTCTGGCTTGGCTGGAGAGAC
AGTTACTTAGTTGGGCCTAACTGACCCCACCCACTTGGTTACCGTATAACGTCAATGGTGACTAA
GCTGGTGTTGGTGGTAGACTGGTTCTTCGTGAGGGTCTGCTGATTGGCAATAAGTTCGTGACCGT
GAGCTTGGAGGGTGCTCCCTCTCGGGGCGGTAAAGCAAGTGAATCCCCGTTTGCAGATGGCCCAA
GGGTATGTACAGCACTATGTTGAAGGAACCTAGGAAGGCCTGGCGTGTGCTTGTATGGGGATTGC
CTGGTCCCGATGGTTGTGATATGATAGTTCAATAGGCGAGTGGTAGTGGGGCCAGCGTAATAGGC
GTTACGTAGATTCCCTCTTCAACCCTTGCCCACGACTACCCCCATGTGCTGTACCCACTCAGGAC
CTAACACAATGAGTAACTCGTTTACCGGAAAGCAGCAGTTACTAG
Right flanking sequence: Indices 205631 -- 206130
AGGATCATGCGAATGAGGCCCGACTGGTAAGTTACCCTGGTCGTTGTGGTTGTACGTATGTATCC
GTCTTGTTTGATATACGCGTACGTATGTTGGCTCCGCTCTTCAATGTTCCCGCGTTCCGTTATTG
GGTGCTTACCTTACTGTGCGGTTGGTGCAACTAGGGTGGTTGCTTCGGCTTCATAGACCATGTCT
CCGTTGTTCGGGTTCGGGCTATCGGTAGCCGGGGATCAGGTGCGGGATAAAGGCAAGCATAATCC
GGTGTTTATCGATGGCCCCGCTGCGGAACGAACTACTTTATGCCCGATCAAGCTGCGCATCTTCG
CGAGGGCACACACAGGGGGTTCCACGCTTCGTGTTCCCGGTATTGGTTCGAAACGGGGGGTAGCG
CCCACCGTCAATAACTGTGATCACGGTTGTGTGTCTTCTAGTGTTGCGGGTGCCAACAAGCGCTA
GTTACCAGACCAGGGGACAGAGTTCCTATGTCGGGACTGACGCCA
Found at i:208824 original size:18 final size:18
Alignment explanation
Indices: 208801--208836 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
208791 GCCGTCGCCG
208801 GTGGAATACAACCCGCAC
1 GTGGAATACAACCCGCAC
208819 GTGGAATACAACCCGCAC
1 GTGGAATACAACCCGCAC
208837 ATATGCACGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.11
Consensus pattern (18 bp):
GTGGAATACAACCCGCAC
Left flanking sequence: Indices 208301 -- 208800
TGATATGGCACGCCTGGTTGGTAGTTGCTTAGTATGTTCTGCGATCACGAATGACAATCTCATGA
TGGATACTAGTAACCTTGCGTCAACGAGTTATGTGAATGTTGTAACATAGTGGATAGAGTAGTGC
ACAGTAGAGGAAGAGCGATATCATCAACCAAGTGGATAGTATGCATGCTGATACTGCGTCTAGTA
CTAGCGATGTTGGATCATTTAAGGTCGGTGTTGTTTGTCTTAGTGGTAAGAGTTTCCCGGCCACA
TGTCAAGCGACAATAAACCATAACAGAAAGTTGATACGCGCGGTGCGGGTGTTGGCTGACGCTGA
AGTGACGCCAGTGAATGTTCGATCACACAAGACAGGTGCGTATATAGAGCTATTAAGCCATGTGA
ATGTAGCAACAGGTCGGGTAACCGTGTATTTGGAAATCATGTTTGTTATAGAATGTATTTACAAA
GTAAGTTTCTATCGTGTTATGGGTACGAGTGGGAGGCCGTCGCCG
Right flanking sequence: Indices 208837 -- 209336
ATATGCACGGCAGAAGCCAGCGTATAAGGAACGGGAGTTGGTAAGTGACTAGGTTGAAATATTGA
TCTCGCCACGCCCTTGCCTGCTGCTCCAAGGCGTATGTAACTTAGACAGATAACCACCCGTGCCG
CTTTAGATGCTATACGCGTTCCGATAGGATGCGAACATAGTGCCGGAGCGGCAATAGTCGCCCCG
CCCACTGCCCGTCTTTATAGACATGCCGTTACAAGATTCGCCTGAGCTACAGTATCATGTAGCTT
GGGGCAGATGGGATGCGCGGACACCGGCACAAGGAATTCCGGAAAAGACCTTATTGAACTTACCA
TATAAGTACACTGTGATCAACTCTTCACGCGTGTAGCTTAACCGGTGTAACGTGCCAACGGTTCA
GTATAAATCAATTGTTCCTGGACCCCAGTCCTATAGGAATTCTCTATGCAGCTTTCCACGCAACC
ATAGAGAATAGGGGGTCTGGTAACCTTGTTTCGAAGTGGTCTGCC
Found at i:211280 original size:46 final size:47
Alignment explanation
Indices: 211186--211280 Score: 156
Period size: 49 Copynumber: 2.0 Consensus size: 47
211176 AACGGTTCAG
211186 TTCAAACTGGAACATGTTAACTCGCCCCCCTATACGGTGTTAACCCCCT
1 TTCAAACTGGAACATGTTAACTCG--CCCCTATACGGTGTTAACCCCCT
*
211235 TTCAAACTGGAACATGTTAACTCG-CCCTATACGTTGTTAACCCCCT
1 TTCAAACTGGAACATGTTAACTCGCCCCTATACGGTGTTAACCCCCT
211281 GTCCTGTTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
46 21 0.47
49 24 0.53
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.28
Consensus pattern (47 bp):
TTCAAACTGGAACATGTTAACTCGCCCCTATACGGTGTTAACCCCCT
Left flanking sequence: Indices 210686 -- 211185
GTGGGAACGCTCCGAGGTGCTTATCCTGAGGCGCGTCAATAACACTATCTATCTTCTTCCAGTGG
GGTGATGGTTACCAGGGATCAACAACGTTACGTAACGCCCGCGCGTACAGGCTGAGTGCGCTTTG
TAAGTTCCAAAGAAGCAAGCCTGCCGTTATAGGGGCGGATCCACTAGGGGCGTATCGTGCATTCT
AAGTAAGGTAAGCACCGGACATACCGGCCTATCCTTCGTGGAAGACCACGGTTCTAGAGCGCGCG
AATGCTTGCATTCCGCATCTATAGCGCTCTGTGCGGATGCGAGTAGTGGCGACTCATTCTCGTTA
CGAATGCAGCAGTAATTCCTGCTGTGAGCACCTCTATCAATACAGTTACACGAGGAAAACAACTA
CCGCGACCACCCACCCTCGTGATATCGCTCCCCGAACTAGATCTCGTCAGCCCCAACCCCGCATA
CCCCATACGGTGGCCTGCACCCGCTACATATGTAGAACGGTTCAG
Right flanking sequence: Indices 211281 -- 211780
GTCCTGTTATGTTGGCATATCCCCGGCCACGTTACGCATACCATGTGCAGTAAGGGGATGGTGGC
GCCCTATACGGTGTTAACCCCCTGTACTCACTACCTTACCCAATCCGCGACTCCCCCTCCCCTGG
TGGGCGCGCCCAATACGGCTGGGTACGGTGTGGTGGGTCCCGGCATTTCTAATTGTTTCCTTCCT
CCTTTGGGTTACTCAAAGGAAACACCGTGGGATCAGATACACTAACCGCAAGCTGCATGCATTGA
GCTTGATTCTGTCTTACGTTACCATCCGAACGGTCACTTAAGCACGTGCAGGTATTGGAGGGGCA
GAACGCTTGGTATACGGTGACTGAACATAACGGGGCTCAGTCGCCGCATGGCTCGCTTGAGTTGG
GTGGCGTATGGCAGGGGTTAATATACCAACATCGTATCTGGATCCAACAGCTACGTGTTCGCGGT
GGAGGGTGGTCGCTATCGCTCTCGTGTTATCGGTGGAGGTTGGTT
Done.