Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_027976
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 346544
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Found at i:657 original size:24 final size:24
Alignment explanation
Indices: 625--674 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
615 CCGCCCCTCT
*
625 CCCGTTGGTTGAGTGTCTAAAGAC
1 CCCGTTGGTCGAGTGTCTAAAGAC
649 CCCGTTGGTCGAGTGTCTAAAGAC
1 CCCGTTGGTCGAGTGTCTAAAGAC
673 CC
1 CC
675 GTTTTCCCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (24 bp):
CCCGTTGGTCGAGTGTCTAAAGAC
Left flanking sequence: Indices 125 -- 624
CCGGACCCGCCCGCAGGGTTCGGGTTACCTTCCGAGTACCAATTCAAGAACTGGAGGCCGGCGAC
CACACAAATGCTATCTGCAGATATAGCCTTGGCCTTCCCCTCTCTACGTTCGGGAAAGGTATAAC
CTTGGATCGGCACGATAAAGACTTCACCCATTTCGTCCCAAGTCGTCATTCATTGCTTTGCTGCG
ATGGATCAATAGCTTTGTCCGCCGCACCACCGGAACAAAATCAATCCCTGGCCGTCCTTCCCCTC
TCTACGTTCGGGAAAGGTATAACCTTTGCTGCGACAAGCATTTGTTACTTGGCCCAATCGAAGCA
TCCTTGGTGATCCCTCGGGCTTGTTCCTGGTTATAACTCTTTATATACGTTCTATCCGGCCGGGG
TAATAACACAATTCAGAGGTCCTCATTCCCCACAAGATCGTTGGTGGCAGAATCCAGCTGGTTCT
AGTTGGCAGGGAAAATTGCTGAATCAAGATTTTAGCCGCCCCTCT
Right flanking sequence: Indices 675 -- 1174
GTTTTCCCCTCCATGCATTCCCGGAGAGACCTTCTCCGCGTGGAGCTTCGGCCTAGAAGAATTTC
TAGGAATACGAAGAAAACACTTTCATTTCGAAATAGCATGTTTGGAAGGTGCGTACACGCCTCCC
CCCGGGTTATTGCAGGATACCATCGAAATGGTCAAAGACGTCTAATTGAATGGAGATTACGAGCT
GGGAAGAGAACATGGCCTGGCCATTCCTGCTTACGATTCGCGCGGTCATTGCTTTGTCTTCTTCC
GTGCCCTGCTCCTGCTCATATTAACCGGTACTTTCTTTTGCAGGGGTCAAGAAGAATGGGATTGA
GATTGTGCAGGACCGATCAAATGCCATACTTCTTCTAAGGATTAGCTCAGAACCGGTCACTTCGG
AGCCAAAATGAAGCTTTAACGAAACGAGTGGACCCAGATAAGTAATTCATAGGGGGGGCCTGTTG
AGTCGACTGCCAGCTCATAAATTGGTAATTTCGCCAACTGAACGA
Found at i:3510 original size:29 final size:29
Alignment explanation
Indices: 3468--3528 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
3458 ACGAATCCTC
*
3468 AGGGTCTTTAGACACTCGACCAACGGGAG
1 AGGGTCTTTAGACACTCGACCAACGAGAG
3497 AGGGTCTTTAGACACTCGACCAACGAGAG
1 AGGGTCTTTAGACACTCGACCAACGAGAG
3526 AGG
1 AGG
3529 AATTTCCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.23, G:0.31, T:0.16
Consensus pattern (29 bp):
AGGGTCTTTAGACACTCGACCAACGAGAG
Left flanking sequence: Indices 2968 -- 3467
TTCATTATGCGTTTGGGCATCCCTTACTTTTGATGTTCCAACTCCGAACATGAAAAAACTGAAGC
ACAAATGAAGTGTCCTTCGATCCCCTTCAATTGAATAGATCCCGTACCCGCGCCAGCGTACGGTT
CGGCTCCTCCCTCCTTGGCAGTCAGGGAAAGTCCCTACCGACTTTCCCGTCCGCCGAGGATTATC
CCTTTCCTGATAAGGGAAGGAAGGGGAGTCGGTTCTCAAAAGCAGCCTGGGGCTTCGCTGCCCCC
CCACCCCTTAAATCAAAGAAGGGGTGAGGGGGAGATCGATCATCTATTTCCTTCTTTTTTCCGAA
ACACTGGCGACGACGATCCAACCAGTCCACCTCCATGCAAGTGAGCCGCCAAGCCCGCTACGCCC
CCGCGATCTACATGCCGAAATTCGACACTAGAACTGGGTGGGCACTCCACGTTATACCTTTCCCG
AGCGTAGCGAGGGGAAGGACCGGGAAATTGGATGGACGAATCCTC
Right flanking sequence: Indices 3529 -- 4028
AATTTCCTTTCCTCTCTCGTTGGTCGAGGGAACGACGAAAAGACTCTCGTCTTCGACAGCAAGGC
GGCGCAGTTAGTGAACCAGAGATACCGGGATGGGGTTTACCTTCTCCGTCGAGAGCGATGCAACC
GATGTGCCGGCCTAGTCAGACCTACACGGGGGTCAAGCTGGGCTGGGGGAGGTCGGCTGGTTGAC
GAGCGGCGGGGTACTCGGCTTGGAGATGTACCTCTGGTTCCGCCGGCCGCGGGGCCGCATCCCGG
TGGGTTCTTCTTGGCCAGGCCGGCCGCCCCCCTATTCAATAAAGAAAGAAATAAGCCGCATCCAC
ATGAACTGCGGTACTTCGATACGACGCTCAAGAGCAGACATTGGACAACATATTCTCATGGCTAG
TCGAAAAAGGTCTTCTTGACCCTATTCTAGCTGACCTCTTCTTGGCTAATGATTCAAGAATTTAT
TCTGATTGGTTTTTCGCTACTGACCTCGTTCGACCTCGGAAAATG
Found at i:4494 original size:18 final size:18
Alignment explanation
Indices: 4473--4522 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
4463 CACTTGGAAT
4473 TCTTAGTGCATCTCAAAC
1 TCTTAGTGCATCTCAAAC
* *
4491 TCTTAGTACATCTCAAAT
1 TCTTAGTGCATCTCAAAC
4509 TCTTAGTGCATCTC
1 TCTTAGTGCATCTC
4523 TTTCTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (18 bp):
TCTTAGTGCATCTCAAAC
Left flanking sequence: Indices 3973 -- 4472
CAAGAATTTATTCTGATTGGTTTTTCGCTACTGACCTCGTTCGACCTCGGAAAATGGACGCGTCA
GAAATCAGTATGGTTCTTCCCGTATGAAGAGCGAACATACATCATCATGGGTAATATCAGACCTA
TTAAGCAAGTGAGTGAGGCGACAGTGGATTTGAGTTTATGTGTCTGGGCATTCGAGACATAGTTC
TGGTGCCTGCCACAGCACGAGCCCCGCCCTTGATGAACATCTAGAGCCAACATTGGGACCCGTCC
TTGGAATGGCAGCGCATGTCCCCGAGGTTATACCTTTCCCGAACGTAGAGAGGGGAAGGCACAGC
TCAAGCCTGTCGGCCAGCGTGCCGGATCTTCCTCTTTTGTGCGAGCACTATGGTTCTTTCCGAAG
TGACTCCACTCCACCATGCTCTCCCGTGGATCTACGGGAAAAGCCGGCTGGGTGTTGTACCGGTG
GTACGAATAGATATGAGTATTTCACCGTAGCCCTGCACTTGGAAT
Right flanking sequence: Indices 4523 -- 5022
TTTCTTTTTAGCATCTCAAATTCTTGTCCGTATGGGTGGCAACGGATGCGGCTGCTTCGTGTTGA
TCCTGTGTGACGGTATCCGGTGTGGTGGCTGATTCGCGGCTTTACCAACAAAGGGGGGTAAAGCA
AGGGAGAGCGTGGTCATGCGAGGCCTTCGACAGCGATGTCGGTTCCTCCCTCGCCCCCGTCTCTT
CGTTATTCTGCATGGTGAAACAGCTGGGGAAAGCGCGAAGCGCTTTCAAGGTGCCCCCCCCCTAT
GAATCCAAAAAGGGGGGGCGGAGCGCCCCCCTTCTTTACCTTCAGGGGGGGGGGTTCAGGGTAGG
TTATTTCTTGGAATCAAATCCTTTTTTCCGAAAACCGAGGTTATACCTTTCCCGAACGTAGAGAG
GGGAAGGAACGCTTTTCGCCTAAAAAATGGGGGGCAGCTCCGCTCCTTTGCGTCAAGGTATTCTT
CCCGTTCGATGTTGGGTGATCGAACCTCTCCCTCTGTTTCCGAAA
Found at i:13034 original size:18 final size:18
Alignment explanation
Indices: 12988--13036 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
12978 AACAACATCC
* * *
12988 GAGTACCTAAAGGTCCTC
1 GAGTTCCTAACGGTCCTA
13006 GAGTTCCTAACGGTCCTA
1 GAGTTCCTAACGGTCCTA
13024 GAGTTCCTAACGG
1 GAGTTCCTAACGG
13037 ACCTCCTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (18 bp):
GAGTTCCTAACGGTCCTA
Left flanking sequence: Indices 12488 -- 12987
CGTTTTCTTTCCCTGAATGAACAAATGGTTCTGCTTATTAGCCGAAGGGCGGCTGGTCCATCATT
TTAGGGAGAATCAATCCCACGTCGCCATATCATGGCCTGACCCTACAATTCCCCTTTCTACATAT
GTGGCATCCGAGCCATTCACCTCAATTCTTGGAAAAGTGAGCGGACCTCTTTCTGAGCTCTGCGC
CCTTTCCCCCCTATTCAATGAAGAAATAAGATGAGCTCTACGTGGTGGTCCGATGAATGATAGGT
GTCTTCGCCCATATATGAATGGAGTAGCGAATGTGAGTTCTTCGAGGTCGATCCTGATTCTGATG
AAAAGAAGAATAGGTAATCGCCGCGTACCGAAGGATCCTTACCGCCTGGATATCTCTAATTCGCG
GGATATGGGTTGGGCCAACTAGAACTTTGATGAATCAAGATTCCAGCTTTTCACACTTGTTCTGT
GTCCGGTCCGAACATCCGGGCTTTCTCGTTTGGGAAACAACATCC
Right flanking sequence: Indices 13037 -- 13536
ACCTCCTTATGCCTCACGCCTTACGCCTTCGGAAGGAGTACTAGTATAAATCCATAAACCTACTT
ACTCCGTGAAGAAGTGCAACGGTTTAATGATAAACGAAAAAGAGAGAGATGCTTGCTCCTCCGTT
GTCCACCCGCCGTCGTGGTTAGGAGAAAGAGACCGTAGGCGGCTGCCTATTGATAATGAAACAGA
TAAGTGGTACGCGGTGGTAAGGTCTATCGAAGACCGACCCTGATCTTAGTGATAAGATTCGAGAT
GCACCCTCTCCTCTGAATCATCGAGCAAGGTGCTGGGGGGGAGTTTTGGATGTTCCCCTTTTCCT
GGGTTGGATCGATTGGAATCAATCTTGGGAGAATGCTTATCAGATCGAGTCGAAGGCTTACCTTG
GCGGAGGTAGAAATAGATTGACTAAATACGGCCACGAATCTCGATTTGAATAGCCGCACCACCCG
TGACTTTGATTAACTATGCGTCGGCCGAGGCGTGTACGTAATTTA
Found at i:23679 original size:55 final size:55
Alignment explanation
Indices: 23614--23723 Score: 184
Period size: 55 Copynumber: 2.0 Consensus size: 55
23604 GATGCCATTT
* * *
23614 GGCTCTCAGATCAGCTATTAGATATAGACGGATCGGCTCCACTCAGATTCGGACA
1 GGCTCCCAGATCAGCTATTAGATATAGACGGATCAGCTCCACTCAGATTCAGACA
*
23669 GGCTCCCAGATCAGCTATTAGATATAGACGGATCAGCTCCACTCGGATTCAGACA
1 GGCTCCCAGATCAGCTATTAGATATAGACGGATCAGCTCCACTCAGATTCAGACA
23724 TATATATGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (55 bp):
GGCTCCCAGATCAGCTATTAGATATAGACGGATCAGCTCCACTCAGATTCAGACA
Left flanking sequence: Indices 23114 -- 23613
TCATCAGTGAGGGGATCTCCTCCCTCGTCACCCCCATTGCTGGTGGGTGATAGGCCACTCCTCAT
GTTTGGGAGTCTACAGTTGAAAGAACCTGTACAGAGTGCATCTGATCGACGCATCCTCCGGTCGG
TTCTCAAGGAAGAGCTGATCAGGTATTATCGCTGTAGTCTCTCGCGCGCGGCTCTCCCACCGACC
GGAAGTCCCGGTGCTCACTCGATAGATCGAGATACCCCTATTACATCATATAGGATGCCGCCCTT
ACAGATAGAGATAGATTCCATATGATGCCGTCGTCACGTCATTCCAATTCTATATGATGTGATGG
TGGTTTCTCCCCATATACGATGGTGGTTCCCCTACCCCAAATCCGGCGGGACCCGAGATACCACT
ACATACGATGCTATCTATCACCAATATGATCATCGATGTATGAGGGAGGAATGTTCACTCGACAG
ATCAGGATATTCCCAATCCTTACCGCTACATGATAGATGCCATTT
Right flanking sequence: Indices 23724 -- 24223
TATATATGATGCCATCGGTGGTCCGGAGATAGGGATAGATGGATGATGGGTTTCCCCCTTCCCAC
ATAGAAGATGGTAGTTATTTCGCGATCCTTCCACTCGAAATCTTGATATGTTCACCCGATAGATC
GAGATACCGTTACGTACGGTGCCATTCGCCACCCATGGTCCACACCAGATCCCAAGTGAAAACCC
GGGGTAGACTTAATCCGATTCATCATTGAGGAATCCAATTGATTGATTATTCATACAAATCCGAT
TAATCAATCAACTATTCGATATATTACTCAATATCCGATTACTTAATTCTTTGAATATCGAATTC
ATTAATGCTGGTGGCTTGGTGGGCTATTCATCATCCCGAAGACCTATTATTACTATTCTTCGGGC
CCGGGGTGGTCCAATTCAATTGGGTGGGATGGTCCGATAGAGAATGAATGATTGAGAGATTAGGG
AACAATTAATAGACTAATAATTAGGAGGGAATTCTTGGGTTGGGA
Found at i:24315 original size:18 final size:18
Alignment explanation
Indices: 24292--24327 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
24282 GGACTATTGC
*
24292 GATCTATATCTTACCCAT
1 GATCTATATATTACCCAT
24310 GATCTATATATTACCCAT
1 GATCTATATATTACCCAT
24328 CCATCGATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.39
Consensus pattern (18 bp):
GATCTATATATTACCCAT
Left flanking sequence: Indices 23792 -- 24291
GAAGATGGTAGTTATTTCGCGATCCTTCCACTCGAAATCTTGATATGTTCACCCGATAGATCGAG
ATACCGTTACGTACGGTGCCATTCGCCACCCATGGTCCACACCAGATCCCAAGTGAAAACCCGGG
GTAGACTTAATCCGATTCATCATTGAGGAATCCAATTGATTGATTATTCATACAAATCCGATTAA
TCAATCAACTATTCGATATATTACTCAATATCCGATTACTTAATTCTTTGAATATCGAATTCATT
AATGCTGGTGGCTTGGTGGGCTATTCATCATCCCGAAGACCTATTATTACTATTCTTCGGGCCCG
GGGTGGTCCAATTCAATTGGGTGGGATGGTCCGATAGAGAATGAATGATTGAGAGATTAGGGAAC
AATTAATAGACTAATAATTAGGAGGGAATTCTTGGGTTGGGAGGATGGTCCTCCAAGAATCCGAT
CGGGAAAGGATGAAACAGTATTGATCGATACAATCGGACTATTGC
Right flanking sequence: Indices 24328 -- 24827
CCATCGATCTATATCCAATTGATCTAAACTCAAAAACTTGATCCCAACGGCTCAAAAACCCGGGA
AAAATCATTGATCGATAGTGATTCGAGTGGAAACCTATCTATTTCTATCTACCGATTCAGAAACC
CGGGAAAAATCATTGATCGATGGAATAGACCTATTCACTACCCATGGATCTATCTCTTACCCATC
CATATATCTGTATCCAATTGACCCCAGCTCGAAAACCCGTAATTGCTCAGGGGTAATTCGAACGG
GAACCGGGGGAATCCCGATGAAAAAAACCATCCCTCGGACAATCCCTCCCAATTGAAAGACCCTA
TCTGGGTTCCAACCCAAGAGATTCTTGGGGCATGAGCTATGGTAATTAACCACATTTTCGGGTTT
AGCCCCCGAATCCAACAGTAGTATGGGCTCAACATAAAACCGCATTGAATCATCGCTCTCCCAAG
TTGATTCCTTGTATCTGATTCATCCGGAGGCTTCGTCCGGAATCC
Found at i:33868 original size:23 final size:24
Alignment explanation
Indices: 33800--33874 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 24
33790 ATCCCTGACA
*
33800 TAGATAGATATGTATATATCTATAGATC
1 TAGATAGATA--TCTATATCTAT--ATC
*
33828 TAGATAGATATCGA-ATCTATATC
1 TAGATAGATATCTATATCTATATC
*
33851 TATA-AGATATCTATATCTATATC
1 TAGATAGATATCTATATCTATATC
33874 T
1 T
33875 CACATATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
22 8 0.19
23 16 0.38
25 6 0.14
26 2 0.05
28 10 0.24
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGATAGATATCTATATCTATATC
Left flanking sequence: Indices 33300 -- 33799
TGGGAAGTGATGCCGAAAAAGTATGGTCCAGATCGTCGAAGTGACCCTTGATATCCCCCCCAAGG
AGCCAGGTGATACCGCTCCATTTGCGGGCGGTGCCGAGCGTATCTTATTCCAGGTCCGAACCCCA
CAAACCATTTTCGGTCCGAACACTCGCATTTCTTCAGGGGGGGCATTCTGATCGCTTCTCGTACT
ATTCTCTCGTCCCTGACAGAATATAGTACAAGGGGACGACGCATCGCATCTCCCCGCAAATTGTT
ATTCGGGTCGGTCCGAACTGGAAGGATTTTTTCCTCATTTGATCGATGATAAGACCGATCACGCC
CGCCGGCCGTCGGGAGTGGAATTGTCGACGGCTGGATCTTGCCCCGTCATATGCGGCGGTTTCGT
AGGTAGATCCCCCATTGAATGGTCGGATGGACTGGAATATTCACATCTCCCAATGAATAAAGAGA
TTCATCCTTATATATACATATCGATATATATATCCATCCCTGACA
Right flanking sequence: Indices 33875 -- 34374
CACATATATATAGGATATATAGATATCTATCCATCTCTATATACAGATGGATAGGTACCTATATA
GATGGGTATATATCTATATCTATAGATACGCATCGATACGAAGGGATCTATTCATCTATAGATAG
ATGGATGTATCTATCTATCCATGAATAGGTAAATTCCCCGCGACCCCGTTCCACCACCGTTCACG
ACATCCCTTGCTTCTCGCTGCGAACGGCCGAGACTCCGATATACGGTGGAGGAGTATAAGCGCTG
GTCCCCTTCGGTAAAGTGCTTGTGCCTGCTGTTACCTACCGTAGGACCTCCGTCCCCGAATGAGG
AGGAGCAGGAACAACAGTCAATGGTTGTCCTCGTTCTTCTCCCGCCCGGTAGTTCCGCAACTACT
ACCGTGGTTGCTGCTGCCAACGGGGATCCCCCATTCCGGAAGGTTACGGGGCCGGGCCGGCCCGT
TAGGTCCGAAGTTGTATGCCACTGCTGCGGTGCCGATAGATTCAC
Found at i:35785 original size:26 final size:26
Alignment explanation
Indices: 35727--35786 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
35717 GATATCTATA
*
35727 ATATCTATCTATCTACATATAGATAG
1 ATATCTATCTATCTACATATAGAGAG
* * *
35753 ATGTCTATCTATCTAGATATAGAGAT
1 ATATCTATCTATCTACATATAGAGAG
*
35779 CTATCTAT
1 ATATCTAT
35787 TTCTTTATCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (26 bp):
ATATCTATCTATCTACATATAGAGAG
Left flanking sequence: Indices 35227 -- 35726
GGTTGGTTCTACCAACTAACCAAAAAACACGGGCGGGATCGAACCCCCAATTTCCCGTTAATATC
CGCCCCCTATGAGTTCTTATTATTGGTGAAGAAATGGAAATTTCACTTTTCGGAAGCAGCTTTTC
GCACACCTTCCCTTAGGAATGAAGTGCATTTCTCGATATGTAATTACGCAAACGATCGGGGCGGG
TTACGAGAGACACATCATATATGATCCTCTGGGAGGCACTCCAATACTTGGTGAAACTCTGTCAA
ATATTGGAAATACTCGGTGAAATGTCAACTATTACATATCCATATCCATTTATCCATGGAATAGA
TAGTTATATCTACATAGATATTCCTATACGAATCGATTCATATATCTACATGTATAATCGGAGAA
ATGGAATGGATGGATCAATATCCATTGAGATAGATGTATCTCAATAGATATGTATATATCTCCAT
GTCTATCTCTATAAATAGATATGCATATAGATATCGATATCTATA
Right flanking sequence: Indices 35787 -- 36286
TTCTTTATCTATCTAAATCTATATCTAGATAGATGATGATCCATCTCATCCGCTTACTAATTGGA
AAGAGATGTCGAAGGGAATCCACGAACTCTGCGCCTTTCTCTGGGCCCGCCCCGCTCGCCGCTTC
TTCCGTGCGTGCCACTTCGCGCTTTTCCTGCGCGCGCTATTGGGCCGGATCAGTAATATGCGATG
GTTCAAGGTCCTTACCCGATAATAAGCTTGCGAGGAGCAAGCCCCCCGCGAGCGAATGAAGTGGA
CTGCGCCCGCAAGGCGAAGGAGGAAAGGAGCCTCCCATCTGCGGGGGAAAAGCCGATTCCGTATT
GTCGAACTGAGAATTCATCACACATCTGCGCCCTTCGACGCTTCTCCCTATTCGCGTTTTCCGCC
ATTGGCGCTTCGCTTTCCTTCATATTTGCGAATGATGGATCGTAGCGAATCATTCTTCTTTTTTG
CTCCGTTGATTGATCGGAACTCTTCCGAATTTGCGACAAGTCCTA
Found at i:49384 original size:30 final size:30
Alignment explanation
Indices: 49350--49443 Score: 79
Period size: 30 Copynumber: 3.2 Consensus size: 30
49340 ACTACTACTA
49350 CTTCGACAGTACGCCAGCTCACCCACTATC
1 CTTCGACAGTACGCCAGCTCACCCACTATC
** * * * * *
49380 CTTCGATTGGT--G-CGGGT-AACTACTACTA
1 CTTCGA-CAGTACGCCAGCTCACCCACTA-TC
49408 CTTCGACAGTACGCCAGCTCACCCACTATC
1 CTTCGACAGTACGCCAGCTCACCCACTATC
49438 CTTCGA
1 CTTCGA
49444 TTGGTGCGGG
Statistics
Matches: 44, Mismatches: 14, Indels: 12
0.63 0.20 0.17
Matches are distributed among these distances:
27 8 0.18
28 10 0.23
29 2 0.05
30 16 0.36
31 8 0.18
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.24
Consensus pattern (30 bp):
CTTCGACAGTACGCCAGCTCACCCACTATC
Left flanking sequence: Indices 48850 -- 49349
CATAGGCGAAGTGCTTCGTTTCGAATCAATTCTTCGCTGCAACCGCTTCGATCCACCCCCTCGGT
GAAAAACCGTAGTACGCCCCGATGGGTTTCTCCCAGCGGACTTCTCTGTACTAAAAGTGAATTGT
CTAAGTGCTTTTCCCTGTAGGCAACTTTTTCTCGTTGTGTATTTCATAATCTTTCGATTTCGGGG
GGATACTTACCCCTCCTGCTCCTCCTTCTCCTCCGAGATCGTCGTTGGTCTTTTCGCTCCGAGTG
GGAAATAGAGGGATTTCCTTATACACGTAGGAAATGAAGATATAAACAGCTGCGCCAGCCGAGCT
TTGCTGCCCCACTTCCAAGGACGAAACGCAAAGCGATTTGATTATATATGCAATATTGCATCGAA
AGAGGCACAGCCTTATCTATGTGATAAATGACACACCCCCAACCGCCCCTATATTTCAATAAGAA
ACCCCCGCATCGATCTCGCTTGTCAGCCACTACTAACTACTACTA
Right flanking sequence: Indices 49444 -- 49943
TTGGTGCGGGAAGATGCGCACCGATCTCACTCCCGAAACCCATACCCCCCTGCTCCGTGTTAACG
ATGCGATCAAGGTCATGAACATGACCGAGTTAGCAAGGTCATGAAATGACCGATCAACCGGGCGG
AAAAGACCACCAAGAAGGAAAAGGTAGCGAGCTCGCGGGCGATTCAATAAAGAGAGAAATAAGGG
AACCACACACGCTCGAGGACGAGACGGCAACAGTCGCACCAACACCGGGGATTACCGGACGGAAG
GGCAGGACAGGAGCTAAGGTCTCTATTCGCATAGACAAAACAGCGATACGTGTGCCTCCGCATCC
AAGGAACGATGGGAGCGTTAGCCGGGGACCGACCGTAGAGATTCTTGCAGCATCATGACCTGACC
ATGAAATAGCAAGGGCGGCTGCTATCGCGTGTCTCCCAGTCTTAGGAGATGGCTTATTGAATACA
CGAATTGCTCCCAAACGAAGGGCTTTTATTGGCCTTGGCCCACAG
Found at i:49428 original size:58 final size:58
Alignment explanation
Indices: 49338--49453 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
49328 CAGCCACTAC
49338 TAACTACTACTACTTCGACAGTACGCCAGCTCACCCACTATCCTTCGATTGGTGCGGG
1 TAACTACTACTACTTCGACAGTACGCCAGCTCACCCACTATCCTTCGATTGGTGCGGG
49396 TAACTACTACTACTTCGACAGTACGCCAGCTCACCCACTATCCTTCGATTGGTGCGGG
1 TAACTACTACTACTTCGACAGTACGCCAGCTCACCCACTATCCTTCGATTGGTGCGGG
49454 AAGATGCGCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (58 bp):
TAACTACTACTACTTCGACAGTACGCCAGCTCACCCACTATCCTTCGATTGGTGCGGG
Left flanking sequence: Indices 48838 -- 49337
TTCTACAATGCCCATAGGCGAAGTGCTTCGTTTCGAATCAATTCTTCGCTGCAACCGCTTCGATC
CACCCCCTCGGTGAAAAACCGTAGTACGCCCCGATGGGTTTCTCCCAGCGGACTTCTCTGTACTA
AAAGTGAATTGTCTAAGTGCTTTTCCCTGTAGGCAACTTTTTCTCGTTGTGTATTTCATAATCTT
TCGATTTCGGGGGGATACTTACCCCTCCTGCTCCTCCTTCTCCTCCGAGATCGTCGTTGGTCTTT
TCGCTCCGAGTGGGAAATAGAGGGATTTCCTTATACACGTAGGAAATGAAGATATAAACAGCTGC
GCCAGCCGAGCTTTGCTGCCCCACTTCCAAGGACGAAACGCAAAGCGATTTGATTATATATGCAA
TATTGCATCGAAAGAGGCACAGCCTTATCTATGTGATAAATGACACACCCCCAACCGCCCCTATA
TTTCAATAAGAAACCCCCGCATCGATCTCGCTTGTCAGCCACTAC
Right flanking sequence: Indices 49454 -- 49953
AAGATGCGCACCGATCTCACTCCCGAAACCCATACCCCCCTGCTCCGTGTTAACGATGCGATCAA
GGTCATGAACATGACCGAGTTAGCAAGGTCATGAAATGACCGATCAACCGGGCGGAAAAGACCAC
CAAGAAGGAAAAGGTAGCGAGCTCGCGGGCGATTCAATAAAGAGAGAAATAAGGGAACCACACAC
GCTCGAGGACGAGACGGCAACAGTCGCACCAACACCGGGGATTACCGGACGGAAGGGCAGGACAG
GAGCTAAGGTCTCTATTCGCATAGACAAAACAGCGATACGTGTGCCTCCGCATCCAAGGAACGAT
GGGAGCGTTAGCCGGGGACCGACCGTAGAGATTCTTGCAGCATCATGACCTGACCATGAAATAGC
AAGGGCGGCTGCTATCGCGTGTCTCCCAGTCTTAGGAGATGGCTTATTGAATACACGAATTGCTC
CCAAACGAAGGGCTTTTATTGGCCTTGGCCCACAGGATATGCGAC
Found at i:49435 original size:28 final size:28
Alignment explanation
Indices: 49346--49435 Score: 67
Period size: 28 Copynumber: 3.1 Consensus size: 28
49336 ACTAACTACT
49346 ACTACTTCGACAGTACGCCAGCTCACCC
1 ACTACTTCGACAGTACGCCAGCTCACCC
** * ** * *
49374 ACTATCCTTCGATTGGTGCGGGTAACT-A-CT
1 ACTA--CTTCGA-CAGTAC-GCCAGCTCACCC
49404 ACTACTTCGACAGTACGCCAGCTCACCC
1 ACTACTTCGACAGTACGCCAGCTCACCC
49432 ACTA
1 ACTA
49436 TCCTTCGATT
Statistics
Matches: 42, Mismatches: 14, Indels: 12
0.62 0.21 0.18
Matches are distributed among these distances:
26 4 0.10
27 4 0.10
28 15 0.36
30 11 0.26
31 4 0.10
32 4 0.10
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (28 bp):
ACTACTTCGACAGTACGCCAGCTCACCC
Left flanking sequence: Indices 48846 -- 49345
TGCCCATAGGCGAAGTGCTTCGTTTCGAATCAATTCTTCGCTGCAACCGCTTCGATCCACCCCCT
CGGTGAAAAACCGTAGTACGCCCCGATGGGTTTCTCCCAGCGGACTTCTCTGTACTAAAAGTGAA
TTGTCTAAGTGCTTTTCCCTGTAGGCAACTTTTTCTCGTTGTGTATTTCATAATCTTTCGATTTC
GGGGGGATACTTACCCCTCCTGCTCCTCCTTCTCCTCCGAGATCGTCGTTGGTCTTTTCGCTCCG
AGTGGGAAATAGAGGGATTTCCTTATACACGTAGGAAATGAAGATATAAACAGCTGCGCCAGCCG
AGCTTTGCTGCCCCACTTCCAAGGACGAAACGCAAAGCGATTTGATTATATATGCAATATTGCAT
CGAAAGAGGCACAGCCTTATCTATGTGATAAATGACACACCCCCAACCGCCCCTATATTTCAATA
AGAAACCCCCGCATCGATCTCGCTTGTCAGCCACTACTAACTACT
Right flanking sequence: Indices 49436 -- 49935
TCCTTCGATTGGTGCGGGAAGATGCGCACCGATCTCACTCCCGAAACCCATACCCCCCTGCTCCG
TGTTAACGATGCGATCAAGGTCATGAACATGACCGAGTTAGCAAGGTCATGAAATGACCGATCAA
CCGGGCGGAAAAGACCACCAAGAAGGAAAAGGTAGCGAGCTCGCGGGCGATTCAATAAAGAGAGA
AATAAGGGAACCACACACGCTCGAGGACGAGACGGCAACAGTCGCACCAACACCGGGGATTACCG
GACGGAAGGGCAGGACAGGAGCTAAGGTCTCTATTCGCATAGACAAAACAGCGATACGTGTGCCT
CCGCATCCAAGGAACGATGGGAGCGTTAGCCGGGGACCGACCGTAGAGATTCTTGCAGCATCATG
ACCTGACCATGAAATAGCAAGGGCGGCTGCTATCGCGTGTCTCCCAGTCTTAGGAGATGGCTTAT
TGAATACACGAATTGCTCCCAAACGAAGGGCTTTTATTGGCCTTG
Found at i:55245 original size:18 final size:18
Alignment explanation
Indices: 55222--55271 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
55212 ATAAGGAGGT
55222 CCGTTAGGAACTCTAGGA
1 CCGTTAGGAACTCTAGGA
*
55240 CCGTTAGGAACTCGAGGA
1 CCGTTAGGAACTCTAGGA
*
55258 CCGTTAGGTACTCT
1 CCGTTAGGAACTCT
55272 GTCGATCGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (18 bp):
CCGTTAGGAACTCTAGGA
Left flanking sequence: Indices 54722 -- 55221
ACGACGAGGGACAAAACGAAATGACAAAACCTATCACGAATGATTCGGACCTATGACGGGAGCTC
CCTCAGCAGGGGGGCTTTGACTTCGAAATTCTTCAATAATGGGTGGCCGGCGGCGGAGGCAAATC
CCCTGCGCACGCGGAAAATTGACCTCTGAAATATTGAATGGAGTGAGTGGCTGGCTTCTGGGAGC
CGAAGGATCAATCTTCATCATATACGATGCCCGCATAATACACGATAATGAAATGGTCCATAATC
CAGGCCTTTAAAACACCCCTTTCCCTCGCTGGCTCTCAAATAGAGCCTTTCTTTCAATGCTATGT
CTCTCTCATAACGAAGCCTTGACCAAAGGATGGACACGAATGATCACCAATGGTGGTGACGAATG
ATCATGTTTGTCGCGGTTCTTGGTTTATATTGATAGCCTTTTGTAGGCTCTGCCCGTGATATGAG
AGAATTCAAAGGATTGAAGGCGTAAGGCGTGAGGCATAAGGAGGT
Right flanking sequence: Indices 55272 -- 55771
GTCGATCGTATGAAAATTGACCAAGTTGCCCCAATAATGGAAAAGGGCCGGGAATTCTATTTCTA
TCACATAGGATGCCCCGCCCGGAGGAACACAAAGGATCAAAGAACGGGATAAACAAAGGCGGCTC
GTTCGAGGACGAAAGATCCACCCGCTGCTTCCGAGGCTGTGGAAACAGTAAGCCGGTCATATACT
TATGAAATTCTGCAGATCCCCCCATAAATGAATGAATAAAGAAAAGAGTCAAGATCCCTGCCTGG
AGAGAGAAAGACCCTGGCCATTATGCACGGGATCTGTAGCTCCCCCCTATATTTAGATAATCAAG
AAGTTGGAGGGTTACCTCCCAGGGTCTTTAGACACTCGACCAACGGGAGAGGGTCAGCGAGGTTG
GGGCGGAGCGAGCTGTAGTTGGGGCCCGGGTGGACAGAATGCAATGAGAGCGTAGCTCGTAAAAT
CTAATGATCTTATTTGGTTATACCTTTCCCGAACGTAGAGAGGGG
Found at i:56241 original size:37 final size:37
Alignment explanation
Indices: 56199--56277 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
56189 GCCCCTAGCT
56199 CAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGG
1 CAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGG
* *
56236 CAAGTAAGTCTCCGAGTATGTGTTTATGAGGGTCTGG
1 CAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGG
*
56273 TAAGT
1 CAAGT
56278 TATGTGTCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (37 bp):
CAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGG
Left flanking sequence: Indices 55699 -- 56198
AATGCAATGAGAGCGTAGCTCGTAAAATCTAATGATCTTATTTGGTTATACCTTTCCCGAACGTA
GAGAGGGGAAGGAGAGAGTTGCCCCAAGGCGAAACTGAGCGCGGCGAAGGGAAACCAGGGGACCG
GGAGTAGGCCCCATTCACCACCCTTGAAGAAATCAATGAAGGTAGGGGATTCACGCCGCGACCAG
CAGGCACCACTAACACCTGGGCCCTTACGTACAACCCAACCGGGTCCGGCTCATTCTTATTACAA
AGGCCAGCAACCGCTAGGGAATTGCTGCCCCCGTTCGGAGAACACGACCTAGGAGTATAGGCGCG
CAGTATCCCTCCTGTGGTGCCGGTTCCCTTCTAGCCCCGCTGAACGGTCTCGGGGAAAAATCCCG
CATATTGGGCGCAGCTGATATGCGAAAAATCGCATATTGGGCGCGGCTAGCGGGGTCATCCACTA
ACGAACGGTCCTGGCTCGAGTAAGTCTCCGAGTTTGCCCCTAGCT
Right flanking sequence: Indices 56278 -- 56777
TATGTGTCTATGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGA
TAGGGAGAGGGTATTTAGACACTCTCCCGGGTATTTAGACACTCTCCCGGGTATTTAGACACTCT
CCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGA
TAGGGAGAGGGTCCGGTTAGTTAAGTGTCTATGAGGGTCTTTAGACACTCTCCCGATAGGGAGAG
GGTCCGGTAAGTTCAAGCGAAGTGATTGGCTGTCAACGGGAACGGTCTTGAGCAACCGGAGCGGA
GCAGCAGCGGCGGCTGGACGGTTCATTCATTAGTAGCATTTTCCATCTATTCGCCCGTTCCGTTC
CCTAGACCTATTCTTCATTATCCGATCCGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCAAAA
TCAGAATAGCGAAATTCTTGGGTCATCTCAATTGGTTCAGAAACC
Found at i:56325 original size:30 final size:30
Alignment explanation
Indices: 56289--56484 Score: 252
Period size: 30 Copynumber: 7.2 Consensus size: 30
56279 ATGTGTCTAT
56289 GAGGGTATTTAGACACTCTCCCGATAGGGA
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56319 GAGGGTATTTAGACACTCTCCCGATAGGGA
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56349 GAGGGTATTTAGACACTCTCCC--------
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56371 --GGGTATTTAGACACTCTCCC--------
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56391 --GGGTATTTAGACACTCTCCCGATAGGGA
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56419 GAGGGTATTTAGACACTCTCCCGATAGGGA
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56449 GAGGGTATTTAGACACTCTCCCGATAGGGA
1 GAGGGTATTTAGACACTCTCCCGATAGGGA
56479 GAGGGT
1 GAGGGT
56485 CCGGTTAGTT
Statistics
Matches: 156, Mismatches: 0, Indels: 20
0.89 0.00 0.11
Matches are distributed among these distances:
20 40 0.26
30 116 0.74
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (30 bp):
GAGGGTATTTAGACACTCTCCCGATAGGGA
Left flanking sequence: Indices 55789 -- 56288
AAGGCGAAACTGAGCGCGGCGAAGGGAAACCAGGGGACCGGGAGTAGGCCCCATTCACCACCCTT
GAAGAAATCAATGAAGGTAGGGGATTCACGCCGCGACCAGCAGGCACCACTAACACCTGGGCCCT
TACGTACAACCCAACCGGGTCCGGCTCATTCTTATTACAAAGGCCAGCAACCGCTAGGGAATTGC
TGCCCCCGTTCGGAGAACACGACCTAGGAGTATAGGCGCGCAGTATCCCTCCTGTGGTGCCGGTT
CCCTTCTAGCCCCGCTGAACGGTCTCGGGGAAAAATCCCGCATATTGGGCGCAGCTGATATGCGA
AAAATCGCATATTGGGCGCGGCTAGCGGGGTCATCCACTAACGAACGGTCCTGGCTCGAGTAAGT
CTCCGAGTTTGCCCCTAGCTCAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGGCAAGTAAG
TCTCCGAGTATGTGTTTATGAGGGTCTGGTAAGTTATGTGTCTAT
Right flanking sequence: Indices 56485 -- 56984
CCGGTTAGTTAAGTGTCTATGAGGGTCTTTAGACACTCTCCCGATAGGGAGAGGGTCCGGTAAGT
TCAAGCGAAGTGATTGGCTGTCAACGGGAACGGTCTTGAGCAACCGGAGCGGAGCAGCAGCGGCG
GCTGGACGGTTCATTCATTAGTAGCATTTTCCATCTATTCGCCCGTTCCGTTCCCTAGACCTATT
CTTCATTATCCGATCCGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCAAAATCAGAATAGCGA
AATTCTTGGGTCATCTCAATTGGTTCAGAAACCACACGTTTCTCCGGATCATCATAGCGTACTTC
CACGTATCCACTCAGAGGGAAGTCTTTTCGTGATGGATGACCCTCGAAACCATAATCTGTTAATA
CACGGCGTAGATCCGGATGATTGATGAGATAAACACCGGACGTATCCCATACTTCTCGCTCCCAC
CGGCCGGCTGATGGAGATGGACTTACTACCGGAGATATTCGTGTT
Found at i:56376 original size:20 final size:20
Alignment explanation
Indices: 56351--56411 Score: 122
Period size: 20 Copynumber: 3.0 Consensus size: 20
56341 GATAGGGAGA
56351 GGGTATTTAGACACTCTCCC
1 GGGTATTTAGACACTCTCCC
56371 GGGTATTTAGACACTCTCCC
1 GGGTATTTAGACACTCTCCC
56391 GGGTATTTAGACACTCTCCC
1 GGGTATTTAGACACTCTCCC
56411 G
1 G
56412 ATAGGGAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.30
Consensus pattern (20 bp):
GGGTATTTAGACACTCTCCC
Left flanking sequence: Indices 55851 -- 56350
CTTGAAGAAATCAATGAAGGTAGGGGATTCACGCCGCGACCAGCAGGCACCACTAACACCTGGGC
CCTTACGTACAACCCAACCGGGTCCGGCTCATTCTTATTACAAAGGCCAGCAACCGCTAGGGAAT
TGCTGCCCCCGTTCGGAGAACACGACCTAGGAGTATAGGCGCGCAGTATCCCTCCTGTGGTGCCG
GTTCCCTTCTAGCCCCGCTGAACGGTCTCGGGGAAAAATCCCGCATATTGGGCGCAGCTGATATG
CGAAAAATCGCATATTGGGCGCGGCTAGCGGGGTCATCCACTAACGAACGGTCCTGGCTCGAGTA
AGTCTCCGAGTTTGCCCCTAGCTCAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGGCAAGT
AAGTCTCCGAGTATGTGTTTATGAGGGTCTGGTAAGTTATGTGTCTATGAGGGTATTTAGACACT
CTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGA
Right flanking sequence: Indices 56412 -- 56911
ATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGG
GAGAGGGTCCGGTTAGTTAAGTGTCTATGAGGGTCTTTAGACACTCTCCCGATAGGGAGAGGGTC
CGGTAAGTTCAAGCGAAGTGATTGGCTGTCAACGGGAACGGTCTTGAGCAACCGGAGCGGAGCAG
CAGCGGCGGCTGGACGGTTCATTCATTAGTAGCATTTTCCATCTATTCGCCCGTTCCGTTCCCTA
GACCTATTCTTCATTATCCGATCCGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCAAAATCAG
AATAGCGAAATTCTTGGGTCATCTCAATTGGTTCAGAAACCACACGTTTCTCCGGATCATCATAG
CGTACTTCCACGTATCCACTCAGAGGGAAGTCTTTTCGTGATGGATGACCCTCGAAACCATAATC
TGTTAATACACGGCGTAGATCCGGATGATTGATGAGATAAACACC
Found at i:56464 original size:100 final size:100
Alignment explanation
Indices: 56291--56471 Score: 362
Period size: 100 Copynumber: 1.8 Consensus size: 100
56281 GTGTCTATGA
56291 GGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTA
1 GGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTA
56356 TTTAGACACTCTCCCGGGTATTTAGACACTCTCCC
66 TTTAGACACTCTCCCGGGTATTTAGACACTCTCCC
56391 GGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTA
1 GGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTA
56456 TTTAGACACTCTCCCG
66 TTTAGACACTCTCCCG
56472 ATAGGGAGAG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (100 bp):
GGGTATTTAGACACTCTCCCGATAGGGAGAGGGTATTTAGACACTCTCCCGATAGGGAGAGGGTA
TTTAGACACTCTCCCGGGTATTTAGACACTCTCCC
Left flanking sequence: Indices 55791 -- 56290
GGCGAAACTGAGCGCGGCGAAGGGAAACCAGGGGACCGGGAGTAGGCCCCATTCACCACCCTTGA
AGAAATCAATGAAGGTAGGGGATTCACGCCGCGACCAGCAGGCACCACTAACACCTGGGCCCTTA
CGTACAACCCAACCGGGTCCGGCTCATTCTTATTACAAAGGCCAGCAACCGCTAGGGAATTGCTG
CCCCCGTTCGGAGAACACGACCTAGGAGTATAGGCGCGCAGTATCCCTCCTGTGGTGCCGGTTCC
CTTCTAGCCCCGCTGAACGGTCTCGGGGAAAAATCCCGCATATTGGGCGCAGCTGATATGCGAAA
AATCGCATATTGGGCGCGGCTAGCGGGGTCATCCACTAACGAACGGTCCTGGCTCGAGTAAGTCT
CCGAGTTTGCCCCTAGCTCAAGTAAGTCTCCGAGTATGTGTCTATGAGGATCTGGCAAGTAAGTC
TCCGAGTATGTGTTTATGAGGGTCTGGTAAGTTATGTGTCTATGA
Right flanking sequence: Indices 56472 -- 56971
ATAGGGAGAGGGTCCGGTTAGTTAAGTGTCTATGAGGGTCTTTAGACACTCTCCCGATAGGGAGA
GGGTCCGGTAAGTTCAAGCGAAGTGATTGGCTGTCAACGGGAACGGTCTTGAGCAACCGGAGCGG
AGCAGCAGCGGCGGCTGGACGGTTCATTCATTAGTAGCATTTTCCATCTATTCGCCCGTTCCGTT
CCCTAGACCTATTCTTCATTATCCGATCCGTCGCTACGCGCCATTTGTTCCCAAGGACTAGCAAA
ATCAGAATAGCGAAATTCTTGGGTCATCTCAATTGGTTCAGAAACCACACGTTTCTCCGGATCAT
CATAGCGTACTTCCACGTATCCACTCAGAGGGAAGTCTTTTCGTGATGGATGACCCTCGAAACCA
TAATCTGTTAATACACGGCGTAGATCCGGATGATTGATGAGATAAACACCGGACGTATCCCATAC
TTCTCGCTCCCACCGGCCGGCTGATGGAGATGGACTTACTACCGG
Found at i:61696 original size:31 final size:31
Alignment explanation
Indices: 61658--61716 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
61648 GGGGCCCTGT
*
61658 TCCTTCCCCTCGTTGACTCGGGAAAGGGATA
1 TCCTTCCCCTCCTTGACTCGGGAAAGGGATA
*
61689 TCCTTCCCTTCCTTGACTCGGGAAAGGG
1 TCCTTCCCCTCCTTGACTCGGGAAAGGG
61717 CCAGTACCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.17, C:0.31, G:0.25, T:0.27
Consensus pattern (31 bp):
TCCTTCCCCTCCTTGACTCGGGAAAGGGATA
Left flanking sequence: Indices 61158 -- 61657
GCCCTATTGATTGATCCGATAAGGACCCTTTGATTCCCTGATCTATTAAGTAATAGATAAAACAA
CCTCGGTTCGCCGATCGATGGGGAATCAGGAGATAGAGGCGAAGTTGCAGAAGGCGGAGCTGCGC
TTGGGAATGTCACTCCGCGATAGGTAACCAATTCCCGTGCGTGCCCCTTCCCCTCTCTACGTTCG
GGAAAGGTATAACCTTTGTTGCCTCTATCCCTTTTCTCCATTTCTTTCTCTAGTAAGAGGGGGCT
GGAGAGGCACTAATCACTTACCCGAGGGGGTGGAGCGGCGGCTCATCCCTTTGTCTTGATGAATA
GGGAGATTGGGTTTGACGCTTGATGGAGCGGGAGCCCGCCCACTGAAAAGCGATTGAGAGAGCCT
TCCCCTCTCTACGTTCGGGAAAGGGCCAGTACCGTTAGGTCCTGCTTACGCCTTGATATCCTCGA
TATCCTCAAGTTGTGCACGCGAGAGAAAGAATAGAGGGGCCCTGT
Right flanking sequence: Indices 61717 -- 62216
CCAGTACCGTTAGGTCCTGCTTACGCCTTATTGGGCGGGCCCCTTAACGAGAATTTGATCCGGGG
GATTCGTTGTTATATACGTAACATGACATATATAATGATGAGCCAGCAGCTAATTATTTCCTTAT
TGAATGGGGGCCCAACTGGAATCACCAACATAGACCCCCCCAAATCCAGCATTGGTGGCCCCCTT
TCCGAAGAATGAATAGTGGTGGGTGCAGGGATATCCTGATTCTTCAGGAACAGATTGAGGGGGGT
CCCCGGGAAGGGGGGGAGAGTGGCCGAGTGGTTAAAAGCGACAGACTGTAAATCTGTTGGAGGTT
TTCTACGTAGGTCCGAATCCCGCCTCTCCCAATACCAATTTTTTGTAGACTGATTCTCGAAAGAG
AAGCGAAGCACATGTCGTTTTTGTGCCTGACCCTTCATGCAATTGGATGGAGTGGAACCATCTTG
AATGCATTGGTATTCGAGCCGAAGAACCGTACGAGATGGTTTTTT
Found at i:62700 original size:47 final size:47
Alignment explanation
Indices: 62622--62715 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
62612 AACGAGTAGA
* *
62622 GCAATGCGGGGGCACTTCCCTTTTGTTTCCGGTAGACCGCCCCTACT
1 GCAACGCGGGGGCACTTCCCTTTTGTCTCCGGTAGACCGCCCCTACT
62669 GCAACGCGGGGGCACTTCCCTTTTGTCTCCGGTAGACCGCCCCTACT
1 GCAACGCGGGGGCACTTCCCTTTTGTCTCCGGTAGACCGCCCCTACT
62716 TCTTCTTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.13, C:0.36, G:0.26, T:0.26
Consensus pattern (47 bp):
GCAACGCGGGGGCACTTCCCTTTTGTCTCCGGTAGACCGCCCCTACT
Left flanking sequence: Indices 62122 -- 62621
CGTTTTTGTGCCTGACCCTTCATGCAATTGGATGGAGTGGAACCATCTTGAATGCATTGGTATTC
GAGCCGAAGAACCGTACGAGATGGTTTTTTGCTTTCGGCTCTCCAACTACTCCAGTTGCCCACAG
CAGTCCTTTTCTATCACCACTACCCGAGAAGCGGACCTCCATATGATGCTTCTTGCGGCGCAGGC
AATCGGGACGACTGCGGACATCACCGACTCACGAATGTACGTGCTCTAGAATCAGCCCACGGTGC
ATCTTTCCCATCTCCCCGCCCCGCATCGCATACTCCCGCCGAATTGTTGAGGTGCCAGCCGGAAA
AGACTCTCGGGCGTATCAGATGCTTCGATCTCTATTGTATCTTTCGGTATATATTCCCGGCAACC
CGATCGCCTTTCATTTCTTAGTAAAAGCTTCAATGGACTGAACAGTGCCGCCTACGTCTCGACGT
ATCTGTAACGGGTAGGGATCGGGAAACAGCGTTTGAACGAGTAGA
Right flanking sequence: Indices 62716 -- 63215
TCTTCTTTCTTTATTTAGGACCCCTCATTCCCCATTTCTTCATTTAGGGGTTGGTCTATCCCCCG
AAAGAGAGAGTACGGGACATATCTGATCCGGGCGAATCAAAGACTAAATGTTAGATCTCAGTTGC
CACATCGGATCAATCAATTCTCCGATCCAATTAGATACGTTTTTATCCACTACAGAAAGGCTTGG
CCGACCCAAACACAATGTTTACGGATCGCTCTAGCTAGGTTCTTGGTTGAATGAGTCTTCGCCCA
CTAGCGATTGAACTAGAGAATGTGGCTCCGCCGATCCGACCTGAAATGGATATTCCCACTCTTTC
CGATCGCTCACGCTTGCTAATGAAAGAATTGAATTGAATGCGGCTGGGCGAAATGGACCCCCGGT
GCCGAGATGCTGGGCTGGCTAAGATCTTTGATAGAAGGTTCCTTCTCCCTACGGTCAAAGTGCCT
ATCCTATTCTATCACAGAATATGATGGTCTAAATCGGGATGTCCT
Found at i:65512 original size:20 final size:20
Alignment explanation
Indices: 65487--65527 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
65477 TCTCGTGAGG
65487 TAGATATAGAGATAGAGATA
1 TAGATATAGAGATAGAGATA
* *
65507 TAGATATAGATATAGATATA
1 TAGATATAGAGATAGAGATA
65527 T
1 T
65528 CTAGAGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.32
Consensus pattern (20 bp):
TAGATATAGAGATAGAGATA
Left flanking sequence: Indices 64987 -- 65486
TTGATTTCTTTCTTCATTCGGCGACGTTTGATTAATCATTTTTGGTGAATGGCTAGCAATAATAA
CCACAACTCCTCGAAAGTCAACTGCTTTTTGCAGGATCGAATATGGACCACTGACAAAATCATAG
CGGAGGAGTCAGGACCTAACTGGCTGAAAAAACCTCGGAACAGGGGAAAACGAATAAGGAACAAG
TGGATATGAGGGGCAAAACATCAGAGCTTTCGCAAGTGATCATATCATGTACGATGCCGCATTCA
ACCGGAATCTTGCATTCATTCGGCCAGGTCGGACTCAATCAAAGGAAATCTCTCGAGCGGGTTGA
AGCATCTCTTCTCTGGGCCTGCTGCTGGTCCTTCCCCTCTCTACGTTCGGGAAAGGTATAACCTC
ATTCGTTGATGCTGGCTGGGAAGAAGACTCGAAGCTGGAGCCCGCACGGAATAACCATGGCAGGT
TCTTCCGGGCGGGGCCCACCGGAGCTATTCGATCTTCTCGTGAGG
Right flanking sequence: Indices 65528 -- 66027
CTAGAGATATCTATCTAGATAGATAGATAGATATATCTAAGATATAATACATCATATAGAAGATC
TATTCTATCTATTCAACGAAATCGATATTGCCTCCGAACAAGCCCGGGGCGAAGAGCCGGGAGGC
GGAGCAATCGACCATGCCACAATGCAATGCAGCAGAGCAGCAATGACACGACCAACCCGCAATGC
AAAGCAAAGCGCCATGCAGAGCAGCAATGGCACGGAACTACCATGCGGACAGGAACCACACGAGG
CTATGTAGGATGCCCATTCTCCAGGTTCAGTATGTGTGCTCGGATGAAGGTTGCTACCGTTGCTG
GCCGAGATTCGATTCCTTCCCTCTAGCTGATCCATTTGCTGATTCTATTTAGCCTTCCATTTTAT
ACAATTTATCGGGAAATAACGTATATAGAAGAATTTGATCGATTAGCCGAGAATACCGCTCCAAC
CTATCAAATCGGGATCATCCGAGCTTTTCTCCCCTTTTTATTAAT
Found at i:65525 original size:6 final size:6
Alignment explanation
Indices: 65496--65526 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
65486 GTAGATATAG
*
65496 AGATAG AGATAT AGATAT AGATAT AGATAT A
1 AGATAT AGATAT AGATAT AGATAT AGATAT A
65527 TCTAGAGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (6 bp):
AGATAT
Left flanking sequence: Indices 64996 -- 65495
TTCTTCATTCGGCGACGTTTGATTAATCATTTTTGGTGAATGGCTAGCAATAATAACCACAACTC
CTCGAAAGTCAACTGCTTTTTGCAGGATCGAATATGGACCACTGACAAAATCATAGCGGAGGAGT
CAGGACCTAACTGGCTGAAAAAACCTCGGAACAGGGGAAAACGAATAAGGAACAAGTGGATATGA
GGGGCAAAACATCAGAGCTTTCGCAAGTGATCATATCATGTACGATGCCGCATTCAACCGGAATC
TTGCATTCATTCGGCCAGGTCGGACTCAATCAAAGGAAATCTCTCGAGCGGGTTGAAGCATCTCT
TCTCTGGGCCTGCTGCTGGTCCTTCCCCTCTCTACGTTCGGGAAAGGTATAACCTCATTCGTTGA
TGCTGGCTGGGAAGAAGACTCGAAGCTGGAGCCCGCACGGAATAACCATGGCAGGTTCTTCCGGG
CGGGGCCCACCGGAGCTATTCGATCTTCTCGTGAGGTAGATATAG
Right flanking sequence: Indices 65527 -- 66026
TCTAGAGATATCTATCTAGATAGATAGATAGATATATCTAAGATATAATACATCATATAGAAGAT
CTATTCTATCTATTCAACGAAATCGATATTGCCTCCGAACAAGCCCGGGGCGAAGAGCCGGGAGG
CGGAGCAATCGACCATGCCACAATGCAATGCAGCAGAGCAGCAATGACACGACCAACCCGCAATG
CAAAGCAAAGCGCCATGCAGAGCAGCAATGGCACGGAACTACCATGCGGACAGGAACCACACGAG
GCTATGTAGGATGCCCATTCTCCAGGTTCAGTATGTGTGCTCGGATGAAGGTTGCTACCGTTGCT
GGCCGAGATTCGATTCCTTCCCTCTAGCTGATCCATTTGCTGATTCTATTTAGCCTTCCATTTTA
TACAATTTATCGGGAAATAACGTATATAGAAGAATTTGATCGATTAGCCGAGAATACCGCTCCAA
CCTATCAAATCGGGATCATCCGAGCTTTTCTCCCCTTTTTATTAA
Found at i:65536 original size:36 final size:36
Alignment explanation
Indices: 65493--65571 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 36
65483 GAGGTAGATA
* *
65493 TAGAGATAGAGATATAGATATAGATATAGATATATC
1 TAGAGATAGAGATATAGATAGAGAGATAGATATATC
*** * *
65529 TAGAGATATCTATCTAGATAGATAGATAGATATATC
1 TAGAGATAGAGATATAGATAGAGAGATAGATATATC
65565 TA-AGATA
1 TAGAGATA
65572 TAATACATCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 5 0.14
36 31 0.86
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.32
Consensus pattern (36 bp):
TAGAGATAGAGATATAGATAGAGAGATAGATATATC
Left flanking sequence: Indices 64993 -- 65492
TCTTTCTTCATTCGGCGACGTTTGATTAATCATTTTTGGTGAATGGCTAGCAATAATAACCACAA
CTCCTCGAAAGTCAACTGCTTTTTGCAGGATCGAATATGGACCACTGACAAAATCATAGCGGAGG
AGTCAGGACCTAACTGGCTGAAAAAACCTCGGAACAGGGGAAAACGAATAAGGAACAAGTGGATA
TGAGGGGCAAAACATCAGAGCTTTCGCAAGTGATCATATCATGTACGATGCCGCATTCAACCGGA
ATCTTGCATTCATTCGGCCAGGTCGGACTCAATCAAAGGAAATCTCTCGAGCGGGTTGAAGCATC
TCTTCTCTGGGCCTGCTGCTGGTCCTTCCCCTCTCTACGTTCGGGAAAGGTATAACCTCATTCGT
TGATGCTGGCTGGGAAGAAGACTCGAAGCTGGAGCCCGCACGGAATAACCATGGCAGGTTCTTCC
GGGCGGGGCCCACCGGAGCTATTCGATCTTCTCGTGAGGTAGATA
Right flanking sequence: Indices 65572 -- 66071
TAATACATCATATAGAAGATCTATTCTATCTATTCAACGAAATCGATATTGCCTCCGAACAAGCC
CGGGGCGAAGAGCCGGGAGGCGGAGCAATCGACCATGCCACAATGCAATGCAGCAGAGCAGCAAT
GACACGACCAACCCGCAATGCAAAGCAAAGCGCCATGCAGAGCAGCAATGGCACGGAACTACCAT
GCGGACAGGAACCACACGAGGCTATGTAGGATGCCCATTCTCCAGGTTCAGTATGTGTGCTCGGA
TGAAGGTTGCTACCGTTGCTGGCCGAGATTCGATTCCTTCCCTCTAGCTGATCCATTTGCTGATT
CTATTTAGCCTTCCATTTTATACAATTTATCGGGAAATAACGTATATAGAAGAATTTGATCGATT
AGCCGAGAATACCGCTCCAACCTATCAAATCGGGATCATCCGAGCTTTTCTCCCCTTTTTATTAA
TCGAATTAATAGGGTGCGGGTGTAGCGGAAGCTTTGCTTATGGCG
Found at i:67688 original size:18 final size:18
Alignment explanation
Indices: 67642--67690 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
67632 TCGTTCATTG
* * *
67642 GAGTACCTAAAGGTCCTC
1 GAGTTCCTAACGGTCCTA
67660 GAGTTCCTAACGGTCCTA
1 GAGTTCCTAACGGTCCTA
67678 GAGTTCCTAACGG
1 GAGTTCCTAACGG
67691 ACCTCCTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (18 bp):
GAGTTCCTAACGGTCCTA
Left flanking sequence: Indices 67142 -- 67641
GCGAAGCGCTATTCAATCGAGAAAGAGGGGGGGACCTTTAGGAAAGTGGTTCAGGTAGCTCAGTC
GGTTAGAGCAAAGGACTGAAAATCCCTGTGTCAGTGGTTCGAATCCACTTCTAAGCACGAGCCGA
GTGGTTGGTAGCCGCCTCTTGCTCATATTGCTCATTTGTCCTTCCCCTCTCTACGTTCGGGAAAG
GTATAACCTTAGAGATTGCTTCGCCGATCTCTGGGTCGTGTTCCATTATTACCCGGGCGAGAGGT
CGTAGAAACATGACCAATCGGCCCCGCCCGGCCTTTTTTCGATTCACCAAAAGGAGTTTTTGGCT
TTTCCCATCACTCCCTGCTGGGGGAATAACTCTAAGCTGTGACGGACCCCGACCGACTCATACTT
TATACAATCATTCTACCTATGAGAAACCGAACGGTATATCTCCGATTCTTGTTCATCTTCCGACA
TGCTGGACGTAGTCTTCTTCTCCGACGAGCTGGCATCGTTCATTG
Right flanking sequence: Indices 67691 -- 68190
ACCTCCTTATGCCTCACGCCTTACGCCTTCGAGGGGCGGGTATTTCCCTAAGCCTACCCGATCCC
TGGGTAGAAGCTTGATCTCTCTTGCCTACGGTTTGGTGAACCAGTGGCTGGGTTGACTCTTTCCC
GAAAGAGGAAACTGATTGGCAAGCTCAAGCATCTATGCGGTCAGGTCGAAACGCATGAAAACGGA
CCGATGAACCCAGGTTTCTGCTTACCGGCTCTATGAGCATTACCCGAATATGACTTTTCCGGTTA
ATACTATCGAACCCGGATATCGAATTCGATCCGGGGCGGAGGCGCTGCTTAATGTCGCGGCCGCT
CCCCGCCCGCCTTGGAGAAATAAGGCCTTTGAATGAAATAAAGAAAGGAATAGGGGTCGTCGGGT
TCCTTATGATGCCAAGTACCATGCGGATCCCTTCGTAACGATCTTGACTCCTCTTCGGGAAAAGC
TTGGTTAGGGTTGACAAAGGAGGTAATTTCCGATCCCGATCGGCC
Found at i:70402 original size:56 final size:56
Alignment explanation
Indices: 70316--70423 Score: 207
Period size: 56 Copynumber: 1.9 Consensus size: 56
70306 CGCCGCGCCT
*
70316 TTCAACCTTTTCACCACGAAGTTTCTGCTCCACCCTTCTATATCCCGATAAGGATA
1 TTCAACCTTTTCACCACGAAGTTTCTGCTCCACCCTTCTATATCCCAATAAGGATA
70372 TTCAACCTTTTCACCACGAAGTTTCTGCTCCACCCTTCTATATCCCAATAAG
1 TTCAACCTTTTCACCACGAAGTTTCTGCTCCACCCTTCTATATCCCAATAAG
70424 AAGAATAGGG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.25, C:0.33, G:0.09, T:0.32
Consensus pattern (56 bp):
TTCAACCTTTTCACCACGAAGTTTCTGCTCCACCCTTCTATATCCCAATAAGGATA
Left flanking sequence: Indices 69816 -- 70315
ACATTTTCATCCAATGGCGGTATCGCTACGACAACAGCATCGAGCGGCTTACACCGTTGCAACAG
CATGAGGAACTGTTCTTTCATCACCTTGTCGACAGTGAATTATTCGTTCTTTGGTTCAACTATCA
GCTCAGGTTCAATACTGAGACGCCACTGCCCTATTCATCATATAAATGAAGGAGCTTCAACAGAT
AGTGATAACCAACAAGCTGCTTCTTAATCACTTGGTGCAGCACCACCAACACGAATTACTCCGCG
CTCGGTGCGTGCGAGCAGCAAAAACATGCCCTGTCGAATCGCTGAGAAAGCCATTCATTACTGGA
TCGACTCGGAAATATGGTAACCACGCGATAAGAAGCTCACCTCCTACTATATGAAAGTAGGTTCC
GAAGACCGAAAAACTCTATTACGTAACAGATTCTGCGATATATCCCTCGATTCGCCGGTCCTGAC
TATGATGGGCCGAACCGTATCCAACTTGGCGGGCTCGCCGCGCCT
Right flanking sequence: Indices 70424 -- 70923
AAGAATAGGGTCCGGTAGCTCTCCGTAGTCCCGTCCTACGAACAAGGCCCATTAATTGAGTGAGG
GGTCCCGCCCCTTACTTAGCTAATGTATTTGCTGGCTCTCTCTCCCTGACGAGCAACATTTTTTG
CACCCACTTTGTTCGAGAACCGTATCACCGAGCCGCCTAACTCAAATTGCTAGCTAGCTAGCTAA
CTCCAGGCTATCAAGTTCCATCATGGGGGGGGGATTATGCCCTTATCCATTTCTTGGGGCTCCGC
CCTCGCGGGAACCCCCATGGGTCGAAGACCTGACTAAGCCGTGGGTTATTATAGGTAGGTGTTGG
CCCATTTACTTCACTGAAATGCAGTAATATCGCTATTGAGTGCTCTCCGGGAACCGGTCTAGGAC
CGGCCATCCATAAAAGGTGAACCTATCTCTTATTATAAGGATCCGGCAGTGAGAGGCAAAAACGG
GAATTTTCTCACGTCATAAACCGTCCTGAATGGCCAGAAGTGATA
Found at i:82302 original size:20 final size:20
Alignment explanation
Indices: 82277--82319 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
82267 GCACCAGCCC
* *
82277 CAACCCCGAGCAAGCCTAAG
1 CAACCCCAACCAAGCCTAAG
*
82297 CAACCCCAACCAAGCCTGAG
1 CAACCCCAACCAAGCCTAAG
82317 CAA
1 CAA
82320 AACGGGTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.42, G:0.16, T:0.05
Consensus pattern (20 bp):
CAACCCCAACCAAGCCTAAG
Left flanking sequence: Indices 81777 -- 82276
AATCGGAGCTGGAGGACAGTACGGTTATGAAGGGGGCCGACAGCATTTGTTGCTGAAATGGGAGT
TCTGCCCCATCCAATAGGGCCCCTTAAATGAAAGAAATGAATAGGTAGGCGGATCGACTGTCTTA
CCCTCTCTCCACCGAATCGGGACGGCATCATCTTTGCAGCCGGCCCCCTCGAATCAAATCAATCA
ATAAATAAGGCGCGAGCATCCGGCATTGACCCCGGCGCCCTACTCAAATAAATGAATAGGGCGGC
TGGGATGAGCTTTCCCTGCTTCTGGTGAAGCCTTGCGAGCCCGCGAAGGAAAAAGCCATGATCAA
GAACCTACTGACCTCAACCCTTACTGAGGTGGCTGGCCCCCAACCTACCCCGACCTCTCTGCTAT
TTCCGAGCGTTCGTGCTTGATCTGCATGCTCGCAGGGGCAAGCCATGCCATCCAAACTGAAGACC
CAAGCTTATCCGAAGTGGTGAAGTGGGGGCTTGCTGCACCAGCCC
Right flanking sequence: Indices 82320 -- 82819
AACGGGTTTATTGGGAGGAAACTTGTGGGGGGGGGGGGGGGGGGTTTCCACCTGAAAGATCCAGC
TTCGCTCACACGCCGGTCCGGCTAGCTTACTCCTACCTAAACCAGAAAAGATCCCCAAAGGGGAA
TAGGGTTCGTCATATTATGAATGAACAAGCTCATCCGAGCGCGTGCTCGAATAAATCAATATGAA
GTACGCGAATAGACGGCAACGATACGGTTACGCGCTGTGCACCCGGCCGGGTCCCCGAGCTTCGA
GGCAACCTAACCGCCCCTATTTCTTCATTTCTGTTCAAAAGCCCCATTTCGAGCCGACGTATTGG
TTCAGTACTTTAAGTCGGGATCAAGTGTCCCGCCCGGATAAGACTGCTGTTAAGGCTGCTCATGC
CGCGAGATCGCTTTAGTTGAAAAAGCCGGCCGAGAGAGATAGATCCTATTCCAGGGGAAGCGAAG
CGGAGATCCATGGAGTTTCGGGAACAAAGCCCCTATTGATCCGGA
Found at i:91386 original size:39 final size:39
Alignment explanation
Indices: 91343--91420 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
91333 AGGTCGTCCC
*
91343 GATATCCCCTTCCCGAGTAATACGAGGGGAAGGAAGTGA
1 GATATCCCCCTCCCGAGTAATACGAGGGGAAGGAAGTGA
91382 GATATCCCCCTCCCGAGTAATACGAGGGGAAGGAAGTGA
1 GATATCCCCCTCCCGAGTAATACGAGGGGAAGGAAGTGA
91421 CTCGACCAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.17
Consensus pattern (39 bp):
GATATCCCCCTCCCGAGTAATACGAGGGGAAGGAAGTGA
Left flanking sequence: Indices 90843 -- 91342
AGCCCCCCCCCTGAGGAAATAGTGGTCGAATTCCTATAAAGAGTGGAATAGTAAAATCGTTCAAA
TCCCTGATCGGGACGAGCGGGACATTACTGGAATCAATGCCGGCAGATTCCCCCCATTCTGTGGA
ATTACTGTAGTAATAATAGGATGCCTCATTATCCGTAGATTGTAGTTGGTCCCTCGTGTGAATGG
GTTTATGCGGGGTGAAATGCCCATCTAAGAGAAAAGGGTCGGACACGCGAGCCGCCGGGTGAAGT
GATAGTCTTCTCGGACAGGTGGACCGGTCCGCATTTCTCAGGTGGCTGGCCGCCTTTTTCGAATA
ATGAATAGCGTTCTCGATCGGTATTTGTGGAGAGGAGGGCAGGGATAAGAGCCTGAAAAAGCTCA
TGGGAGAGTTCGGTGACTAAAAAGGCGGGCAGGCACCGGAAGAGCTAGATCAGGAAAGAGAATGA
CCCTGCCAAGGATTCTTGTTGTAGTGCTTGATCGAAGGTCGTCCC
Right flanking sequence: Indices 91421 -- 91920
CTCGACCAAAGGGCGATCTTCCCGCCCTGCTTCCGCCCTTTATTGGGAGATAATGGGCTCGACCC
CCCCTTCTATTCATCTAATTGGGGTCCGAAGGACAACTCGACTGTTTGAGGAGAGGGTTCCGATC
CTTCGCGGCATCGTGTATGATGGAGATTGCCACTTACTCCTGGCTCCCGAAGTGACCCCCCGGAA
AGGCAAAATGAAAACCGTTGCCCGCCGTATATGATCTGGACCGACGAGCGACACTACCTACCTCG
CATTTCATAGACTAACCCATTTACTTATTGACTTATTTAAGGCGCACTTACCGCAGAGCATTGAT
CGGGAAGAAGAATCCATCCCCTTATTGATCCAGGGGTAACGGAGAGCATGCCTGTTTGGGTCCCC
GACCCCGAACCCCTCGGATAAAGGATGTTGATTTACCGTGTCTTAAACGGCCATGAAGATGCATG
GTTGGCGAATGCGATCGAAGAGGCTAGCGAAGCGGAGCGATCTCC
Found at i:104322 original size:27 final size:28
Alignment explanation
Indices: 104277--104329 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
104267 GTCAGCCCCT
* *
104277 ACAATAAATCAAAGTGTGA-ATGAATCG
1 ACAAAAAATCAAAGAGTGACATGAATCG
*
104304 ACAAAAAATCGAAGAGTGACATGAAT
1 ACAAAAAATCAAAGAGTGACATGAAT
104330 TTGGTTCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (28 bp):
ACAAAAAATCAAAGAGTGACATGAATCG
Left flanking sequence: Indices 103777 -- 104276
TGGAGTAGACGAGAAAGGATTTCTCGGAGCAACCCTCCCTGGTTCCAGACCCAGGAGTGCACTTT
CCCGTATGAGCATTCGGTACATGCATAGGTCCGTGGAAGAGTTGCAAGGTCACCACTACTCGGGA
TCTCCCCCCTAATCTTAGATAGGTCGTCCGAGGGTTCGCCGCGGTTCATTGCTGTGCTTACACAC
TAGGCTACCCTTCTCCGAAAGCTTCGCGGGACCACCTACCACTAGTCTCCGGATCGCCCGGAGGG
GTTTACTGCACAAAAAGGCCCGGGGACGCTGGCTCCCGCAGAGGGAAGCCCAACGAATGTCAGAT
GCAAAGCTCCGCACCTCATTGAGATCATATTGGCATACTCCCCTGGAGAAAAAGGAGCAGACCCC
ATCGAAGACGAGGGTAGGGTACAACAAGGCCATTTCCGTCCACCGCCCTTCTCACAGAGCCGTAC
GTGGACGTTACCGCTCATACAGCTCCCAGCCAGCAGTCAGCCCCT
Right flanking sequence: Indices 104330 -- 104829
TTGGTTCTTCAGCAGTAGCATGAGAAGAGCATCCCTGTAACAAAAACCTAAGGATCCCCCCTTTG
GAGTAGAAGGGAGCTTCGTTAGATTCGAGGGGGGGTGATTGATCCAGATAGCTCAGAGATCCAAT
TTTGCTAATAATAATGAATGAAATAGGGCCGGGGGGACGCTAATGCTAATGCTAATAATAGGCTC
AGTTCTGTGGAAACGGAGTAAATAGATCTCGAAAGCTCGTTCCCTTTTTATAGTGACTCTTGATG
GAACCAACTGCTCCTACTTCTCATAGAAGTACGAGGATCAGGCGATCTACAATCTTTCTTCCGCC
TATTTCTTCAGAGGTATCAGGTCCTGGCGTAGTTATGATAAGTACATCGGCTTACGAGGGGGGAT
ATTGACTTTGACCTTCCAACCACTCGTCCCTGGGCAAGGGTCTTTTCCCCAGGTCTCCGTCTCCA
GGCGCAGACATGAATTGATGATCACAGAAATGGGGAGAGTGAAGA
Found at i:108351 original size:24 final size:24
Alignment explanation
Indices: 108317--108364 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
108307 ATTGATCGTG
108317 TCATTCAAGTGTGCAACGTCCATC
1 TCATTCAAGTGTGCAACGTCCATC
*
108341 TCATTCGAGTGTGCAACGTCCATC
1 TCATTCAAGTGTGCAACGTCCATC
108365 AATGATGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (24 bp):
TCATTCAAGTGTGCAACGTCCATC
Left flanking sequence: Indices 107817 -- 108316
TGCTGGGATATTCCCGGTCCGCGTGGGAGCAGCGATAAGGTCTGCAGGGCGGAGCAGCTTCAAGA
AGAGTTCGCATCTCTCACTTGAAGGTCCGTACAAGTCTGTCTCGGAATTCTGGTATGCCCAGGCC
GTGTCCACTGCTGCTAGGTCCGGGAATGTAAAGGCGAGGGCGCCGCTATGCCCTGCTGCTGCGGC
CCGATATGACTATGACAGAATCAAGGCCGCAGGTCTAGTATTTCAATGGAGGTGTCGTCCATAGT
TGTTCCCCCCCGCCTTTGGTTATTTACCTTTGAACAAATAGGGCTAGTTCTCCATGGGCAGCGAT
CCATAGATCTATGCCCGGTCCTTCGACCTTCGTTTGACCCCGACGGCATAGATTTCGTAAGACCC
TTATCGCTATTACAGAGGTTGTTGTTCATCGTAAAAGCCCTGGGCTTTGATCCGCTTATTATTCG
AAAGCGCCGGACCACCGGACCTTTTTGCGAGTCAAATTGATCGTG
Right flanking sequence: Indices 108365 -- 108864
AATGATGGTTCATTGATGTCCATTGATTTAGACTCCTTCTCCGTTACCTTCTACGAATAAGATCG
ATAGGGGTCAGGCGGCCGCCTCCTCAGCAGCCCTCAGAACCGTACGGAAGCCTTTCGACTCACTC
GTATGGCTCGCCCCCAAGGATCTGGACCCTGGGCATTACGGTCGCTGTAGCCGCCGCCGGCCGGG
TCTTTACCTGTTGTTCCGCTACCGAGAAACACGGAATAGGTATGCCCAGCGCGTAGAGTGGCGTG
CAGATCCGTTGGGAGTGTCCGTTGTCCCGGTAGGGAACAGTACGAGGCCCCCTTCGTACCAACTG
GAAAGAAAGAGGTCAGTGCTACGGCCCCGGCCCCCTATTATCCGATCCGATATTGAATCAAGGTG
CTCCCCGTAATGGGGATGGTTGGCCCCGACTCCCCGGAATTCTTGGTTTTACCTCCCAGCGAGGG
CGTAGCGGTCTTCGCTTTTCATGTGGGAAAGCGGGGCGCGGCCGA
Found at i:110734 original size:24 final size:24
Alignment explanation
Indices: 110702--110747 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
110692 CCAACCCTCT
110702 CCCGTTGGTCGAGTGTCTAAAGAC
1 CCCGTTGGTCGAGTGTCTAAAGAC
110726 CCCGTTGGTCGAGTGTCTAAAG
1 CCCGTTGGTCGAGTGTCTAAAG
110748 GAACACGCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (24 bp):
CCCGTTGGTCGAGTGTCTAAAGAC
Left flanking sequence: Indices 110202 -- 110701
TGCTACCTCCAATTCCCTGTATGTTCGATGGAGTGAAATATTCCCCACTGATCGGAGTGCGCCGA
TTACCCCCCGAACCGTACGAGATAGTTACCACCTATCACACGGCTTTCTAGCTCCACTTCTTTCT
CTGGTTGTTCCGCTCCGTCGGATCGATGGTAGTATCTGAGATCTGTTACCGGGGTAACGATTGGA
CATAATGTAACCTGCTTCCTACCCATAGTTAGCATGTATCTCCCCAAAAGGATCATACTTGAATA
TTACATCGTAGACCCCCAACTCTATTTTCCTCATCAGTGAACCGGAACATAGTGCATAGGTACTA
TTCGACGCAGATAGGCAGGGTCGCCGCGGGACGACGTGGCATACTACGATCACGTACGGAAGCCA
CTGCTACCCCTCGGCAATATGGAACCTCCCAACTGCTCCCGTTCCTGCTCCGGGATATAGGGTTT
GATCGGGATAGGTAGGCTCAAGCTTTCCCCTCCCCCCAACCCTCT
Right flanking sequence: Indices 110748 -- 111247
GAACACGCGTAGTTCCCCATCATACGGCTTCAGTGACAAAGAGGAGTTTAGGCCGTAGGAGAAGG
GCACCGGCCCGCTTCGGTGATTCCAGCTACAAATCCCTTGGGCGGGATCTGCGCCCGCCGCACCC
ATGGTTCCCTTATCTACGCGCGCACCGCGTCAGCACTGGTCGAAAAGTGGGTCGTCGATCGAGGC
GGGGTGCTTGTGGGCCCAGCAAGGGGGGGTGCTTGTCAGATCCAGACCCCCCACCCCCGGTGGGA
CCTTCGGTTGGCTAGAACCTTTTTGTCCGGGCAAGACGACTTTTTGCTCAATGGACGGAAGTGAA
ATTGAGCCCGAGACACGGGATTATCACTATATAATCGAAGTAAGATCACTGTGTCAGAATGACAG
GAAGTGAGGGAATGGAACCGCCAGTAGGCGACGGCCGGCACCTTTCTATCATAAGTTCTTCACGA
AGCGAAGAAGATCGAATTGAGAGAGCTTATCATTATACAAGCCCG
Found at i:112569 original size:24 final size:26
Alignment explanation
Indices: 112532--112584 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
112522 TATATATTCG
*
112532 GATAGATCCATAT-C-TATCCATATA
1 GATAGATCCATATCCATACCCATATA
**
112556 GATAGATCTTTATCCATACCCATATA
1 GATAGATCCATATCCATACCCATATA
112582 GAT
1 GAT
112585 CCTCATACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.46
25 1 0.04
26 12 0.50
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (26 bp):
GATAGATCCATATCCATACCCATATA
Left flanking sequence: Indices 112032 -- 112531
CTAGAAATCCAAGGTTCCACACGAGCATCAATCCCGTTCTGCGGCGTGGTGGCAGGAACATCCGC
TAGGGGATTGGCTTCGTGGATGGTGTAGGGTAAAATCCGCGAAGGTCATGCAAATACATAGGCCC
CTTCCCTTCTGCCGAGTTGTTCAGGAGGCGTTTTCCGTTCGTACGGTCCCTCGGAGCGAAGGGTT
AGGCAGGTAGTACGGGCCCTCTGACTCCCAGCTATGTGCTGTGCGGCTTTCGCGAAGCGAATGGA
GGCTGATAGCGCCATACGCGTTGGTCCGGAAGAATACTGACTCTCACTTTCGCCCGCCAGAAACG
CGAAAAATTCGATTCAACGTAAATCCCGCCCGCATATTGAGCGCAGCTAATATGCGGCTACGGCT
AGGATATCGATCATACCATATCATGCCATAGACTTATATATGGAGATGGGTATCTGGATATATAG
ATCCAGATGTTAATCTATAGATATATAGATACATCTATATATTCG
Right flanking sequence: Indices 112585 -- 113084
CCTCATACACAAAGATATAGATATACAGATGTACACATCTACATATATCCCTATACATCCGAATG
TATCTACATATCCGCATGTAATGGATAGAGATCTATCTGGATAAGGATATCTATGAACGGATGGA
TAGATATATCCGGATAGATGCATCTATATCTACGGATGGATAGATCTATCCAGATGTATATCGAT
ATACGTATACCTATATAGATAATGGATCATATAGAATCTCTATTTTCTTATATAGATATAGATAG
AGATATAGATATCTATATCTCTATATCTAATATATAATACATCATATAGAAGATCTATTCTATCT
ATCTCTTATATATAGATATTCTATCTATTCTAGATATGTATATAGATAGAGAGATATAAGATATC
TAAAGATATACATATCCGGATACGTTGTGGATATATAATCTATCTATATGTAGATGCATACATTC
TCTTTATTAACGAAATGATACCCCGCTCGTCGATGAGAATTCTTC
Found at i:112761 original size:22 final size:21
Alignment explanation
Indices: 112706--112763 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
112696 ATATCTATGA
112706 ACGGATGGATAGA--TATATC
1 ACGGATGGATAGATCTATATC
*
112725 -CGGATAGAT-GCATCTATATC
1 ACGGATGGATAG-ATCTATATC
112745 TACGGATGGATAGATCTAT
1 -ACGGATGGATAGATCTAT
112764 CCAGATGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 1 0.03
18 9 0.29
20 6 0.19
22 14 0.45
23 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (21 bp):
ACGGATGGATAGATCTATATC
Left flanking sequence: Indices 112206 -- 112705
GGTCCCTCGGAGCGAAGGGTTAGGCAGGTAGTACGGGCCCTCTGACTCCCAGCTATGTGCTGTGC
GGCTTTCGCGAAGCGAATGGAGGCTGATAGCGCCATACGCGTTGGTCCGGAAGAATACTGACTCT
CACTTTCGCCCGCCAGAAACGCGAAAAATTCGATTCAACGTAAATCCCGCCCGCATATTGAGCGC
AGCTAATATGCGGCTACGGCTAGGATATCGATCATACCATATCATGCCATAGACTTATATATGGA
GATGGGTATCTGGATATATAGATCCAGATGTTAATCTATAGATATATAGATACATCTATATATTC
GGATAGATCCATATCTATCCATATAGATAGATCTTTATCCATACCCATATAGATCCTCATACACA
AAGATATAGATATACAGATGTACACATCTACATATATCCCTATACATCCGAATGTATCTACATAT
CCGCATGTAATGGATAGAGATCTATCTGGATAAGGATATCTATGA
Right flanking sequence: Indices 112764 -- 113263
CCAGATGTATATCGATATACGTATACCTATATAGATAATGGATCATATAGAATCTCTATTTTCTT
ATATAGATATAGATAGAGATATAGATATCTATATCTCTATATCTAATATATAATACATCATATAG
AAGATCTATTCTATCTATCTCTTATATATAGATATTCTATCTATTCTAGATATGTATATAGATAG
AGAGATATAAGATATCTAAAGATATACATATCCGGATACGTTGTGGATATATAATCTATCTATAT
GTAGATGCATACATTCTCTTTATTAACGAAATGATACCCCGCTCGTCGATGAGAATTCTTCATTC
CTCTGGTCCCTCTTCGTGTTCCCCCGGAACTAACCCGTTATCTTCCCTGCTGGGCACAGCGCCCA
TTCGCGAGGAAGAACGCATAGCGTTCAAAAGACTAACGCGCAGCGGAGTGGAGCAGCCGCCGCGG
CGACACGGAGGTTCGCCGCTTAGCTGGATCTCGCTGGTGCCACCT
Found at i:113908 original size:12 final size:12
Alignment explanation
Indices: 113891--113924 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
113881 GAAAGATATC
113891 TAGATATCTATA
1 TAGATATCTATA
113903 TAGATATCTATA
1 TAGATATCTATA
113915 TAGATATCTA
1 TAGATATCTA
113925 GATCTAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (12 bp):
TAGATATCTATA
Left flanking sequence: Indices 113391 -- 113890
GGATCCGGTATAGCAGCTTACGCTCGTTCGCGCGTCTCCCCACGTGTGCTGGACACGTGTTAGCT
GTGGGAAGTATGGTTCCGAAAGCGACTCCGGTTCGCCAGTTCAGGCTCAACCCCTCGCTTCACGT
TAGCGGACTTACATGATACTATCGGGCAATCTCTTTCTTTCTGTGTGGGATGATGTCGAGGAGAG
AAAAGAATGTGTCGGTCGGGCGAGCAACTATTTCCCCTTCATGGGCCCAGATAACGTGCATCTGG
GTAGACCGATCGATGGATAAGAGAACTGAGCCGACCAATCAATAAAATAAGCGCTTGGGCGCTGT
ACTATGTATACTATATGCATGATATACATCTCTCTATATACGTATATACAGATCTATCTATTCGG
ATATGGGTATCTATATATTTCCATATCTATTAATAGAAATAGATCTATCTATTTCTAATAGATAT
AGATCTATCTAGATAGATAGATCTATATCTAGATCGAAAGATATC
Right flanking sequence: Indices 113925 -- 114424
GATCTAAAGAAATCTATATCTATCTAGATATCTAGATAGATATATCTATATCTATATCTATGTAA
TATATATAGATCTCTTTCGATGCATATAGATATATACATATCTATGGATAGATAGATATCCAGAT
GTATCGAGATGGATATCTATCTATGTCCAGATATGAATCTCTTTCTAGAGATACATCACGTTCAT
ATTGCTGCCATTTCGTTCATTTCCAACGAACCGCTTCGCGCCATAAGAAGAAGCAGCTTCGAAGA
AGCGCTCGCTTCGCGCCGACCGAACCTTTCTTTGTTCTTCACGAACGAATTGGAAAGAGAAACAC
CACGCTGTGCGGCGGACCCGGAAATCTTCGATTCTTACTTCGTAGAGCCGATAGAGTGCTGCTGC
TGCCTGCGTTCGTAGGGCCGGCGGAGTCCCCCACCCACTTTTCCCTCCACCCCCGGGGCGAAGCG
CTGTTCAATAAATGGGGCTCCTCGATCGATTGGGGGACCCTGGAA
Found at i:113945 original size:16 final size:18
Alignment explanation
Indices: 113906--113958 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
113896 ATCTATATAG
*
113906 ATATCTATATAGATATCT
1 ATATCTATATAGAAATCT
*
113924 AGATCTA-A-AGAAATCT
1 ATATCTATATAGAAATCT
* *
113940 ATATCTATCTAGATATCT
1 ATATCTATATAGAAATCT
113958 A
1 A
113959 GATAGATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 13 0.46
17 1 0.04
18 14 0.50
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.38
Consensus pattern (18 bp):
ATATCTATATAGAAATCT
Left flanking sequence: Indices 113406 -- 113905
GCTTACGCTCGTTCGCGCGTCTCCCCACGTGTGCTGGACACGTGTTAGCTGTGGGAAGTATGGTT
CCGAAAGCGACTCCGGTTCGCCAGTTCAGGCTCAACCCCTCGCTTCACGTTAGCGGACTTACATG
ATACTATCGGGCAATCTCTTTCTTTCTGTGTGGGATGATGTCGAGGAGAGAAAAGAATGTGTCGG
TCGGGCGAGCAACTATTTCCCCTTCATGGGCCCAGATAACGTGCATCTGGGTAGACCGATCGATG
GATAAGAGAACTGAGCCGACCAATCAATAAAATAAGCGCTTGGGCGCTGTACTATGTATACTATA
TGCATGATATACATCTCTCTATATACGTATATACAGATCTATCTATTCGGATATGGGTATCTATA
TATTTCCATATCTATTAATAGAAATAGATCTATCTATTTCTAATAGATATAGATCTATCTAGATA
GATAGATCTATATCTAGATCGAAAGATATCTAGATATCTATATAG
Right flanking sequence: Indices 113959 -- 114458
GATAGATATATCTATATCTATATCTATGTAATATATATAGATCTCTTTCGATGCATATAGATATA
TACATATCTATGGATAGATAGATATCCAGATGTATCGAGATGGATATCTATCTATGTCCAGATAT
GAATCTCTTTCTAGAGATACATCACGTTCATATTGCTGCCATTTCGTTCATTTCCAACGAACCGC
TTCGCGCCATAAGAAGAAGCAGCTTCGAAGAAGCGCTCGCTTCGCGCCGACCGAACCTTTCTTTG
TTCTTCACGAACGAATTGGAAAGAGAAACACCACGCTGTGCGGCGGACCCGGAAATCTTCGATTC
TTACTTCGTAGAGCCGATAGAGTGCTGCTGCTGCCTGCGTTCGTAGGGCCGGCGGAGTCCCCCAC
CCACTTTTCCCTCCACCCCCGGGGCGAAGCGCTGTTCAATAAATGGGGCTCCTCGATCGATTGGG
GGACCCTGGAACAGAAGGAGGCCCTGCATCATCCAGCGGCGCAAG
Found at i:113970 original size:48 final size:49
Alignment explanation
Indices: 113859--113978 Score: 147
Period size: 48 Copynumber: 2.4 Consensus size: 49
113849 TCTATCTAGA
* *
113859 TAGATAGATCTATATCTAGATCGAAAGATATCTAGATATCTATATAGATATC
1 TAGATAGA--TATATCTAGATCTAAAGAAATCTA-ATATCTATATAGATATC
* *
113911 TATATAG--ATATCTAGATCTAAAGAAATCT-ATATCTATCTAGATATC
1 TAGATAGATATATCTAGATCTAAAGAAATCTAATATCTATATAGATATC
*
113957 TAGATAGATATATCTATATCTA
1 TAGATAGATATATCTAGATCTA
113979 TATCTATGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
46 22 0.37
48 32 0.53
52 6 0.10
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.37
Consensus pattern (49 bp):
TAGATAGATATATCTAGATCTAAAGAAATCTAATATCTATATAGATATC
Left flanking sequence: Indices 113359 -- 113858
TGGCCTTACCACTCGGTCCCGATGGCCGGCGGGGATCCGGTATAGCAGCTTACGCTCGTTCGCGC
GTCTCCCCACGTGTGCTGGACACGTGTTAGCTGTGGGAAGTATGGTTCCGAAAGCGACTCCGGTT
CGCCAGTTCAGGCTCAACCCCTCGCTTCACGTTAGCGGACTTACATGATACTATCGGGCAATCTC
TTTCTTTCTGTGTGGGATGATGTCGAGGAGAGAAAAGAATGTGTCGGTCGGGCGAGCAACTATTT
CCCCTTCATGGGCCCAGATAACGTGCATCTGGGTAGACCGATCGATGGATAAGAGAACTGAGCCG
ACCAATCAATAAAATAAGCGCTTGGGCGCTGTACTATGTATACTATATGCATGATATACATCTCT
CTATATACGTATATACAGATCTATCTATTCGGATATGGGTATCTATATATTTCCATATCTATTAA
TAGAAATAGATCTATCTATTTCTAATAGATATAGATCTATCTAGA
Right flanking sequence: Indices 113979 -- 114478
TATCTATGTAATATATATAGATCTCTTTCGATGCATATAGATATATACATATCTATGGATAGATA
GATATCCAGATGTATCGAGATGGATATCTATCTATGTCCAGATATGAATCTCTTTCTAGAGATAC
ATCACGTTCATATTGCTGCCATTTCGTTCATTTCCAACGAACCGCTTCGCGCCATAAGAAGAAGC
AGCTTCGAAGAAGCGCTCGCTTCGCGCCGACCGAACCTTTCTTTGTTCTTCACGAACGAATTGGA
AAGAGAAACACCACGCTGTGCGGCGGACCCGGAAATCTTCGATTCTTACTTCGTAGAGCCGATAG
AGTGCTGCTGCTGCCTGCGTTCGTAGGGCCGGCGGAGTCCCCCACCCACTTTTCCCTCCACCCCC
GGGGCGAAGCGCTGTTCAATAAATGGGGCTCCTCGATCGATTGGGGGACCCTGGAACAGAAGGAG
GCCCTGCATCATCCAGCGGCGCAAGTGTGTTCTGCTGACGCCTCG
Found at i:117610 original size:12 final size:12
Alignment explanation
Indices: 117593--117627 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
117583 CTCGACCGTT
117593 GGTCGAGTGTCC
1 GGTCGAGTGTCC
117605 GGTCGAGTGTCC
1 GGTCGAGTGTCC
117617 GGTCGAGTGTC
1 GGTCGAGTGTC
117628 AGTACCTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.23, G:0.43, T:0.26
Consensus pattern (12 bp):
GGTCGAGTGTCC
Left flanking sequence: Indices 117093 -- 117592
GGATTGAAAATGTGGTCAATACCACAGAGAATGGAGGGATACCATCTATACCCGTGTACAAATTT
ATGTTTTCATAAGGAAGCCATCGAATGGTTTCCACAAATTGGGATTCGGCCGTAGGAGAATCAAA
TCGTATCCGAGGAACAAGGGGGTACGAAAAAGTAAGAGGAGAGGCGCACAGACCAAGAAATCGTA
TCAGTCGTATTCTTGAATTTGGAATGGAAAGAGGAATAATGCTCCCTAGCACGGGACGCAGAATA
GGACCACTTAGATTGGAATAGCATTCACGAAATTGTCGTGACATAGAATTGAACATTGAAGAGAT
TAGTTGGCAACAGCAAAAAGATGAGGCGCCTAGTTTCAATAAGAGTCTATCAGTGCAAGTCAGCT
GAACACCTTAGGGGTTAGGTGCACCTCTCGCCCATCGAAGTGGGGAGTAATGAGGCTAGTCCCCC
CCCTGGATGAATAAGTAGTGGGGGGGGCCTTTTTCCTCGACCGTT
Right flanking sequence: Indices 117628 -- 118127
AGTACCTAACGGTCCTGCTTACGCCTAAAGGTTATACCTTTCCCGAACGTAGAGAGGGGAAGGCC
CTCATAGTGACTCTGAATTCATAGGGCGGGCGGAAAACGGATTCAAAAAGAAAAGCGATTTTCCC
GGGACGGGGTGGGGGGCTGGAACTTGAAAATGCGGGATATCCCTTATACTCTCTACGTTCGTATA
AGTCTTTTTGATTGATTCAGGGGCTATGCTATTTCCCGACCTATTCCTTAAGGGCCTAGACCGCT
CATTAAACCCCCTTCCTTTTCTTCCCTTTGATTTGATTTATAGTACTTCTGATTGCCTCAATTGA
TTAGTAGGGCCCTTGAATGATTAATAGGTCACTATTCCCCCCGGACCGGGCCTCGGGGGGCAATT
GATTCGAACGAACCCCCCAATTGTTCCTGAAGAATCAATAAGGTTATACCTTTCCCGAGCGTAGC
GAGGGGAAGGATACCCGGGCACTATTCTTCAGGGGGCACTACTAA
Found at i:125555 original size:16 final size:15
Alignment explanation
Indices: 125512--125556 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
125502 AGATAGATAA
125512 TATATCTA-TCTATC
1 TATATCTAGTCTATC
*
125526 TATATATAGTTCTATC
1 TATATCTAG-TCTATC
125542 TATATCTATGTCTAT
1 TATATCTA-GTCTAT
125557 ATAGTAATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 7 0.27
16 18 0.69
17 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.04, T:0.51
Consensus pattern (15 bp):
TATATCTAGTCTATC
Left flanking sequence: Indices 125012 -- 125511
AATTTATCTTCCCATTCCTCTCCTTATCAGTCGAGTACCTAAAGGTCCTCGAACGGATCTTTTTC
GGAAAGAAATGCATACCTGAATAATTGGTCAAAAAACCCCCGATCCTCCATTGATAATCATTGAT
ACAGCTTCGATCGATTCTCGTCGCCATTTGTTCTATTATCTCATCGGATAACGAATTGGTATTTA
CAGATAATGAACGGCCTTTTCCACGAATGGGAGATCCTGTGGAATGACAAGCGTTTCGTGAACAA
ATCAGTGTCTTGTCTGGATCGGGAATAGCAATTTCATTTCTGGAACCGTATATATATACTTTGAA
ATGGTGAGCAGCTACCCGACGGCCCAGATGTGCGTTCGTACCCGGTGATTTCTGAAGAACCGGAC
TAGGATAATTGTACATGGTCCTTTTTCGAGCTGGCTCAGGTGGTTAGCTATGTCTATAAATAGAT
AGATATCTATCTATCTTATATATATATAGATCGATAGATAGATAA
Right flanking sequence: Indices 125557 -- 126056
ATAGTAATAGATGGGAATCAATGTATAAATCGATAAATATGCATAAATGGAATGAATGATGCTTC
ATCACTTGACTGGATATGGAACCCCGGCTGTTTATCGCTCACGCTTGGTACTTATCGCACTTCCC
CAGCCGCCGCCCCTTATTGGCTCCACCCTGTTAGCCCACTCTACCCCGCTTTCCTCTGTGGCCCC
GGGTGAGGTAACCACCTCTCGCCGTGTCGCCCGAGGTGGTGTTTTTCCCGCCCGCGCGACGACTC
GGCGAGTCGTCTTGCGTTTCTATTTCGTACGAGTCGTCTAGATCAGAAAGCACGCATCTCGCCCA
TATCGTTGGAGCGAGAAGCTTGTTGGTAAATCCCTTTAGAGTATGAAGATAAAGCAACTGCCCCG
ACCTTGGGCCAAGGGCTTGCCCCTTAAGACCTTACTGGCTATTTCCCGACCCTCTTGATAGTGAC
TTGGGGCCGGGGACCCCCAACCTTACTTATTCAGGCCCCCCCTCC
Found at i:127258 original size:31 final size:30
Alignment explanation
Indices: 127223--127283 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
127213 ATCCCCAATT
*
127223 ATTGTTCACCCCGGATGATCGTGTTGGGTGA
1 ATTGTT-ACCCCGGACGATCGTGTTGGGTGA
* *
127254 ATTGTTACCTCGTACGATCGTGTTGGGTGA
1 ATTGTTACCCCGGACGATCGTGTTGGGTGA
127284 GCAACAGCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.34
Consensus pattern (30 bp):
ATTGTTACCCCGGACGATCGTGTTGGGTGA
Left flanking sequence: Indices 126723 -- 127222
CCTCTTGGCCACCCTCGACCCTGGCTTTTTGGGGAATCCTGCTCCTGTGTCGCAGGACTTGTAGC
TCGGCGGTCCACCGGGTTTTTGTCTCCTTCCAGTTCCGAGTGTCTTCTCGGATAGTTATAGCGGC
CCATAGGCGCGAGATGTACCTCGTGGGGCCGGCGGTCCCCTGGACATAGTCCTTTCAGGCAGTGG
CCGTTTAGTCCATGGTCCATTGGATGGATGTTCGGTGCAAGGCCAAAAATTAGAACACACTGCCC
GAAACGTTCCCGTCCTTCGCTTTAGGGCCTGTCCCTCAGTGTGGTCAGTACTTAATACTGTCGGG
CAGCGAAGCTTACACTTGTTCACTTATTGTGATGGTTCACCAGGGCCTCTTTCCTCCTCCCTTTT
CTGCTCACTCGTAAATCAGGGGCGGGCTGCCGGACCCCTACAAAGGGGGAGAGAGTCGACTGAAC
ATCTCAGCCATTGGCGGGAATTTCGCTCGCATCCGATCCCCAATT
Right flanking sequence: Indices 127284 -- 127783
GCAACAGCCGCTTCGTCACAGTACTTACTTATGGGCTAACAGGTCACACTTTGGCCAAGTATCCT
ACAGAAAGACTCCCGAAAGCCGAAAAGATTGAAGGAATGGCCATAGGAATGGGCGCATCATGACA
TCGTAAGATGTCTCGCCCGGATGGATTAGTTGGTGCTGGAAATGTTGGAAAAAGTGAACGAAAAG
AGTGATAGGGGGTGGAAAAGACAGAGACACTTCCCAACCGGGAAGCGAAGTTACCACTGATGGTA
TATTTGGTGTAAGCGAGCTCTGGGATCACATCTTTGGAATAAAATCCAGTTGGAAAAGGAAATCC
AATTGGAGATAAGCTGCCTATGAGCATCATAGCATAGGTAAAAGGTAACGAGGAAGCAAGCCCCC
CCATCTTACGCATATCTTGCTCATCCGACATGGCATGAATCACCGGACCTGCACTCGAGAATAGT
AATGCTTTGGGAAAAGCGTGATTCATTGAATGAGAGACGCTAACC
Found at i:131406 original size:21 final size:21
Alignment explanation
Indices: 131380--131425 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
131370 CGATGACTAG
131380 CAGGAACTCGGAGCTCA-AACT
1 CAGGAACTCGGA-CTCATAACT
*
131401 CAGGAACTCGGACTCATGACT
1 CAGGAACTCGGACTCATAACT
131422 CAGG
1 CAGG
131426 TTTCCGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.15
Consensus pattern (21 bp):
CAGGAACTCGGACTCATAACT
Left flanking sequence: Indices 130880 -- 131379
ACGCCGGATAATCAAAACCTGACTAGCTTTTATTCGAAATGGGGGTGGGGGGAACCCGGACCAGC
TCAACCTTAACGCGTAACAGTTACGCGTTGAGAGGGCAAATCAGGAGCCTGATTCAACCCTTCGA
CGAAAGGAGGACGGAAGTGGGATTCGAACCCTCCTTTACCACTTCATTAATGGGGGGGCGGGCGG
CTACCTTTTACTCACTGGGGGGGCGAACCCAAGCACCTCACTGGAGGGCGAGAAGCCCCAAACAC
AGATGTGCTCGTTCATGTTATTCCCTTTCCGATCCCGGAACGGCGAGGAACTCGGACGAAGAAAC
AGATTATATACGCAATTTTTCGTGGTGCGTAGCAGAATAAGCAGATTCTATACGCAATAGGGAGT
GTTTTTCGTGGTGCTACGGGGCCCGGGCAAGGCAGACGGAGAAAACACCGATCCCTCATCAGATT
CTCTAGACAGCAGCCCGGCCCATCGGAGGACTTGCCGATGACTAG
Right flanking sequence: Indices 131426 -- 131925
TTTCCGGACTGGCAGCCCTCAAAAGCCACGAGCCCACCGCCCGCCCCCTATCCCTCTCCTTCGAA
AGGGAAAAGGCTGCCTGCACTTTTTCCTTTGCATGGCGTTTTCATTCCCCGCTTTCTTCGCGTTT
CCATCGAACAGGAGAAAAAGCCTTGACTCCTTTATCTATTTGGAAGGGGTCCCCCGCCCGGGTCG
TCAAGCAAGGAAGGACCGACCAATGAAAGGAAGGGGCAACCGAAGGGGTCAAGAAAAGACAGACC
CGGCCCCAGCCTCGAAAGAGGCTCTTTCTCCGAGAGTGCCCCAGCCGGCTCTGGACCGTGAAATC
TCCTCTGGAAACCCGGCCGGGTTTGGTTTCTTATCCTTCAGTCCCGGGGTCAAGGGCGAAGCTTC
CAGTTATTCAAATTCCCGGATCGTATCGCTCGGGAGATAGGAACAAGGGGAAATAAAAAACCTCT
GTATCGCGGGAGTACAAGTCCTAATCCGTAAGATGATGGGATTCG
Found at i:136449 original size:25 final size:26
Alignment explanation
Indices: 136421--136471 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 26
136411 CTTCTCTGCC
136421 CGCA-GGGTAATAATGAATAGGGGGG
1 CGCACGGGTAATAATGAATAGGGGGG
136446 CGCACGGGGTAATAATGAATAGGGGG
1 CGCAC-GGGTAATAATGAATAGGGGG
136472 AGGTGCTCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 4 0.17
27 20 0.83
ACGTcount: A:0.31, C:0.10, G:0.43, T:0.16
Consensus pattern (26 bp):
CGCACGGGTAATAATGAATAGGGGGG
Left flanking sequence: Indices 135921 -- 136420
AGGCGGGGTCCCGTGATACAAAGGTGGGTCGAAGACCCACCCAACACCCCCCGAGCCGGAGGCAC
GCCGACTTGGATATATAGAATAGGGTAAGGGGTAAGAATAGCCCTTCGGGTATGACCGGTCAGTC
CTCTCCCAATTACTTATTCATTCAATTAGGGGACGACGTCACGGCAGTCGGAGTCAAAGAAAAGG
GAGGTTCCGGGTGGGGTGCCCGGATGCTGCTCCAGTTTCGTTCCTTCGTCTGGTCCAAGTCCGCC
CCCTCCACAAGCCTTTTCCGGACCATCCTGCTACTCGTACTGCTCGTTCACTACACTCCCTCCCG
TACCTCGACTTTGTCCCTCGTCACTCGTTTCGCCGTTCGCACGCGCCATCGAAGCACTTTGAACA
GGCGGGCGGGAGAGATGCAACTCATTGCATAGTATAACTCACGAGTGGAACGACCCAATAGATCA
ACTTTCACACCGTATTTCGGGGAAGGGCTCACTCTCTTCTCTGCC
Right flanking sequence: Indices 136472 -- 136971
AGGTGCTCGCATTAGAAACAGATTTGATGATACAGAATGGTTGGTGAGAGACTATTATGCGCGTT
CCTTCTTCGAACCTTTTAGTATGTATCGCCCCCTTTCCTCGGTCGGAACTATAGATCCGAAGATC
CACCGGACGAGGAACTCCATTCCGCACTGCTGCTGAGTCGTCGGACTTATCCACCAAGGATGGGA
TTCGTGGAATTCTAGTTTGTGGATTGCGCCGGGGAAAATCTACCAAAGCTAGGCAGATATGTAGA
CTCCTTCCCCGCTGCTAAGAGAGAGCAAGGAACAAAATGATTGTTTGTCCGAACTAGCGCCCACT
GGTCTCCTTTCGGGTATGCGGGTACTAAGAGTCCTCCCACTACCAACCAGCAGACGATATCTCAT
CTGGCTGGGTCTTGCCGGTATCAACAACAACAACTGGATAAATAACAACCTATGGAAACGGAAGC
AGCAACTAACTATGGCTCTTGGCCCAGACAACGTCCTAGGCGTGG
Found at i:138131 original size:43 final size:39
Alignment explanation
Indices: 138079--138166 Score: 124
Period size: 43 Copynumber: 2.2 Consensus size: 39
138069 TCCGATTGAC
138079 TATT-AACTCATGATCGGGCCTGGTCGACCCACCCGATCATGA
1 TATTGAACTCATGATCGGGCCTGGTCGACCCA----ATCATGA
*
138121 TATTGAACTCATGATTGGGCCTGGTCGACCCAATCATGA
1 TATTGAACTCATGATCGGGCCTGGTCGACCCAATCATGA
138160 TATTGAA
1 TATTGAA
138167 GGATGGGACC
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
39 14 0.32
42 4 0.09
43 26 0.59
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
TATTGAACTCATGATCGGGCCTGGTCGACCCAATCATGA
Left flanking sequence: Indices 137579 -- 138078
GCCCACACCTGTGTAGAGTAGATCGTTCAGCACCTGCGGCACGAACCAATTTTTGACCCATTGGC
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCCCTAATTACTGGACCAACCCGCTGTAATAATT
CCATAAACACCTAGCGAAGATATGGCAAACAGATGAAGTATACCTATGTCCGAATCTGACGATAC
CATACCATGATCAAAAGGTACAACGGCCCGAGCAACCAAACTTGGCATAGATGTAACCACTGGAG
CCATTCTAGAAGGGGAGAAATTAGCACTACTCGGTAAAATAGGTTCTTTTATAGCTAATTTTGAA
CCATCTGCTAAAGGTTGTAACAATCCGAACGATCCAGCTACATCAGGACCCTTTCGACGTTGCGC
AAGAGCCATTACTTTACGTTCAGCTAACACTAAAAAGGCTACTCCTAGTAGAAGTGGTATGATTA
TCCCAGGTATTTCAGCTGGAATAGCAATGTACGTTTCCGATTGAC
Right flanking sequence: Indices 138167 -- 138666
GGATGGGACCTTTTCCCGAGGAACTATTCACTATTAAAGGGGGGTGGTGCATGATTGAATTGGAC
CCTGTTACGTTACTTCGAATGGAATCCATCACTGGCCCGGCCATAGCTCCGATGCCTCCCCGATC
TATTCGTGGTTGAGTCAATAACATGCGATAACATGCCGGGAAAAGGTCACAGATGTGGCTGAACC
AAGTAACATTGCAAGAACATAGTGGTAGTAGGGTCGGGAAGATTTGCTCTTTGGCATTTATCGAT
GTAACCATCAGCCGCGTTATCATTAATTCGTGTCCGTCCGTATCGCAAAGCTGGATCGACGCCAG
CTGTAATTGATAAAGGTTCGATTGATTCAACCAACACATTTTTCCCCGCCCAATGCAACTAACTA
CGCCAACTGTTTAGTCTTTAAGCTTTGGACCTTGAAGGATTAACCAGAACTGGACAGCCGATCCT
ACAATATCGGACGGAAACTACCGAGACAGGAATTCACCACAAGAT
Found at i:139508 original size:20 final size:20
Alignment explanation
Indices: 139485--139523 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
139475 AGAACACTCC
*
139485 CGATCCGCTCCGATCACTAT
1 CGATCCACTCCGATCACTAT
*
139505 CGATTCACTCCGATCACTA
1 CGATCCACTCCGATCACTA
139524 CCCATCTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.38, G:0.13, T:0.26
Consensus pattern (20 bp):
CGATCCACTCCGATCACTAT
Left flanking sequence: Indices 138985 -- 139484
GATCCCTTATTCTTCCTATTATGAAGTGGTTCCACCGCATGGGAGTTGCGGTTTCCGCTACGTTA
TATTATAGATTCGATTCTCGGCGAAGCCCCCTTGATTCGAATTCCCAGCCCTTCCCCTCGAAATC
AATAAGGACAAGCGCGCCCTTAAATGAATGAATAAGTAGCAGAAGACTGCAGAACACGGACTTTG
ATTAGCCACTTGCCGAATAAGCTGCAGCACGATAAAGAATGCCCGCAGCAGCCCGCACGTCTAGG
GTCGGGAGCAAGCTGCTGCGCCGTCCTGGCCGGGAGTTGTGGGGAGGGACGTATTCCTATATAAC
GAGAAATCTCATTGGCCTAATTATTCCACATCATATCCGCCCGGTCAATCTTATTAATGCTCCTT
TTCCTCGATCATATCAACAGCTTGCTTGCTCGTTCGCTCGCCGCTTAGACCTGCTCGCTCGCTCG
GTCGCATCTATCTATCTGCTCGCGAGCGGATATCTAGAACACTCC
Right flanking sequence: Indices 139524 -- 140023
CCCATCTCACTCCCATTCCTCTCCACCAGAACGGACTACCGATATAAATTGACTAAAGAGTGGAG
AGCAAGGAAACATTTCTCCGAAATAAGCTCTCTATAAAGGATGCACACTGTGGAATTCGACCTCC
CAATGGGTTAGTCAAAAGAAATCAGTGGTGTAACGATCCCATCTTAATTGGTTACATATCAATGG
AATGATACGGAAATTTCCCGCGGGGCCGGAGCGGAATGAAGAGGAAAGACGGCATTGGGCTTCGC
CCTCCTTGCTTCAGGGGGGTGAAGGAAAGTAACCCTGTTTCTGGGGAGAAGGGAGGTTTGGTTAA
GTTGGCGGCTGCCCGTGCAAAAATCCGTAGAATGATAAGGTTGGTGGTTTAGCCCACTCCATTGA
TCCCGCCTCCAGAAACACCTTTACTTTCCCTCCCGGCTCGGCGGCCCCCACCAGGATGATGAATA
TCCATCACACCTTGTTCCTGAAATAACTAGAACTTATAAGTTCTT
Found at i:143147 original size:18 final size:18
Alignment explanation
Indices: 143132--143180 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
143122 AGCTCGAGCA
143132 CCTAACGGTCCTCGAGTT
1 CCTAACGGTCCTCGAGTT
*
143150 CCTAACGGTCCTAGAGTT
1 CCTAACGGTCCTCGAGTT
*
143168 CCTAACGGACCTC
1 CCTAACGGTCCTC
143181 CTTATGCCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.20, C:0.35, G:0.20, T:0.24
Consensus pattern (18 bp):
CCTAACGGTCCTCGAGTT
Left flanking sequence: Indices 142632 -- 143131
GCCGAAGGAATAGCGAGCGAGTTCTTGGCTAGAGCAATAGATGTTCAATATCAGTTCCGAATCGA
TGGAAGACTGAGATTGGAGTAAGAGGTAGGATATTTCGGTAAGTGTGCTCCGATCCAAGGGTCGG
GAGAAGGGATCTCCCCTGTTTGCCTGCCCGCGGCCGCACCCCTCCGCTAGCTCCCCCTGGAAGCT
GGGTGGGGACCCCTGCACGAATGAGATCTAGACTCAAGCACTGCCAGTAAATAGAGGTGTTCTAC
TCATACCGTACGAATGACCCCTCTTTCTCCGATGATGAATAGGAAGCTGCAGTTCCCATCATCAC
CATGCAGCACACCCGCGGGGTCCAGTCTATCTCCACAGATCAGGTCTCGGATCACCTGCAGCAGT
GTCCAGGCGGATTCGATACGGCAACGCACCGAAGCAGCTTATCTTCGGGATGCATGATGAGCCAG
CCACCACCTTTGAGAAAACGACAACCCACTCGCGCAGCTCGAGCA
Right flanking sequence: Indices 143181 -- 143680
CTTATGCCTCACGCCTTACGCCTCAATTTGCCAGTTGTAATACCCTTGTATACACCACCCATCAG
AACATCCAATAGGTATTACAAATAAAGAATTAGGATACAACAAAAGAGCTAGCCGCGTGTCATCG
GGCATTTATGTGGGGGAGTCTCAGCTTCTGACCAGCACGGTCGGTCATTCTTGATTTAGGGGGGA
ACGAGTAATGCCTTCTGCACTCTCTCGCTTATCACCGAAAAGGTCACGCTCGTACGAACATGACT
ACTAGAGCTTCTGCGAGAATCATCGTACAGTAAACCCTAGTAATGATGACAACGGTAATCAGCTG
TTGCGAACGACGAAGCTGATTCAGGAGCGGGAAGAGGGACTTGAACCCTCAACCTCAGCCCACTT
TCCCAACCCGATGCACTATTATGTCGATTGGATATAACGTATATAAAGAGGTTGTGATTTATAGA
ATAAGTGTATTGCAGAAAGATTGTGAAATGCCTACTTGATTGACT
Found at i:152241 original size:30 final size:29
Alignment explanation
Indices: 152192--152254 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 29
152182 TAAGGAGCAA
152192 ACCCTCTCCCGTTGGGAGAGTGTCTAAAT
1 ACCCTCTCCCGTTGGGAGAGTGTCTAAAT
152221 ACCCTCTCCC-TATCGGGAGAGTGTCTAAAT
1 ACCCTCTCCCGT-T-GGGAGAGTGTCTAAAT
152251 ACCC
1 ACCC
152255 GGGAGAGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
28 1 0.03
29 11 0.34
30 20 0.62
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (29 bp):
ACCCTCTCCCGTTGGGAGAGTGTCTAAAT
Left flanking sequence: Indices 151692 -- 152191
CTTGGTTGGGGGGGCGGGCGTACCACCCATGAACAATAGGGTCAGTGGCGAGTGTCTTCCCGGAT
CTGGGTTCAAGGCTCCCCCCCCTACCTAACCCAACCTTCTCTGAAAGCCAAGGGACCCTGATACG
GCTTTAGCATCTCTGTCGACAGAGATTGCATGATCGGTGGGGGTGGGTCCCCTACATTTGAAGAA
GAAAAAAGCGCCTTCTTTATCCATTTATTTAGGCGAAATGACCCACCCCCTATTGGATCAAGATG
AAGGCGTGGTTCCATCAAGGATTGGACCTAAAAAGGTCTCTGTGGGTCCAATCGATTGATGGGTC
TCCCATTAGGGTGGGCTAGGGAGGGATCGCTGTGAAACAGCCTTTCTATCGAAAAAAATGGGGGA
GCCGCCCCCTCCCCCCTATTCATATTGCTGTTCCTGAAGTGCTCGCTTCAGCCATATTATATATG
CGGTAAGGAGATCCAATCACACACATAACGTACGATAAGGAGCAA
Right flanking sequence: Indices 152255 -- 152754
GGGAGAGTGTCTAAAGACCCTAGATAAATAAGGCCAAGTACTTGCTATGGAGCACACACAGTAAT
AGGAGGGGTATGGGTGGTAGCGAGAGACCACCTTGAATTAGGGTTTATAGCACCATTCGAGTCGA
TACGAATTCAATAGTCGACACATGAGCTTGTAATGATGCATAACCGGACGAATCGTTCGGACACG
TCAATGGGGGGTCAGCCCCTTCTCTCTCTCGAGGCTCAGGAAGAGGAGCTGGGATAAGCTTTGGG
GAGCTGAACCCGGAACACCACCCCCGGGGGGTTTATTGAGGTGAGCACCCCCCCCCATTATTCTT
GATACAGCTCTCACTCCGAAGCGAAGAGCAGAGCGAGAGTAAACCACCAGCTTTAGTACGTACGG
GGTGTCTCTGCTAGTCTCTACAGCCATTTCATTCCACCTATGCTTATGGGCCCATTGATCCCTTC
TCGATCTGCACAGCTGCATGCATTTGAAAGCAACCTACCAGCCTG
Found at i:152259 original size:20 final size:20
Alignment explanation
Indices: 152234--152274 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
152224 CTCTCCCTAT
*
152234 CGGGAGAGTGTCTAAATACC
1 CGGGAGAGTGTCTAAAGACC
152254 CGGGAGAGTGTCTAAAGACC
1 CGGGAGAGTGTCTAAAGACC
152274 C
1 C
152275 TAGATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.22, G:0.32, T:0.17
Consensus pattern (20 bp):
CGGGAGAGTGTCTAAAGACC
Left flanking sequence: Indices 151734 -- 152233
CAGTGGCGAGTGTCTTCCCGGATCTGGGTTCAAGGCTCCCCCCCCTACCTAACCCAACCTTCTCT
GAAAGCCAAGGGACCCTGATACGGCTTTAGCATCTCTGTCGACAGAGATTGCATGATCGGTGGGG
GTGGGTCCCCTACATTTGAAGAAGAAAAAAGCGCCTTCTTTATCCATTTATTTAGGCGAAATGAC
CCACCCCCTATTGGATCAAGATGAAGGCGTGGTTCCATCAAGGATTGGACCTAAAAAGGTCTCTG
TGGGTCCAATCGATTGATGGGTCTCCCATTAGGGTGGGCTAGGGAGGGATCGCTGTGAAACAGCC
TTTCTATCGAAAAAAATGGGGGAGCCGCCCCCTCCCCCCTATTCATATTGCTGTTCCTGAAGTGC
TCGCTTCAGCCATATTATATATGCGGTAAGGAGATCCAATCACACACATAACGTACGATAAGGAG
CAAACCCTCTCCCGTTGGGAGAGTGTCTAAATACCCTCTCCCTAT
Right flanking sequence: Indices 152275 -- 152774
TAGATAAATAAGGCCAAGTACTTGCTATGGAGCACACACAGTAATAGGAGGGGTATGGGTGGTAG
CGAGAGACCACCTTGAATTAGGGTTTATAGCACCATTCGAGTCGATACGAATTCAATAGTCGACA
CATGAGCTTGTAATGATGCATAACCGGACGAATCGTTCGGACACGTCAATGGGGGGTCAGCCCCT
TCTCTCTCTCGAGGCTCAGGAAGAGGAGCTGGGATAAGCTTTGGGGAGCTGAACCCGGAACACCA
CCCCCGGGGGGTTTATTGAGGTGAGCACCCCCCCCCATTATTCTTGATACAGCTCTCACTCCGAA
GCGAAGAGCAGAGCGAGAGTAAACCACCAGCTTTAGTACGTACGGGGTGTCTCTGCTAGTCTCTA
CAGCCATTTCATTCCACCTATGCTTATGGGCCCATTGATCCCTTCTCGATCTGCACAGCTGCATG
CATTTGAAAGCAACCTACCAGCCTGAGTAATTAATAGGGCAACTC
Found at i:177614 original size:75 final size:72
Alignment explanation
Indices: 177526--177722 Score: 236
Period size: 75 Copynumber: 2.7 Consensus size: 72
177516 CCGCCGAATC
* * *
177526 ATTCGACCTGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTGGATC-TATGAAT-AA
1 ATTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACT--ATCACATCAATGAA
* *
177589 TCTCTCCGAAAT
64 TCCCACC---AT
* ** *
177601 ATTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTTTCACATCCGTGGATC
1 ATTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTATCACATCAATGAATC
*
177666 CCACCTT
66 CCACCAT
*
177673 ATTCGACCCGGCGGCTGCTCGCTTTTTGATCAGTGATTCACCAGCCACTA
1 ATTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTA
177723 CATCCGGGGA
Statistics
Matches: 108, Mismatches: 12, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
72 49 0.45
73 2 0.02
74 3 0.03
75 54 0.50
ACGTcount: A:0.19, C:0.32, G:0.20, T:0.28
Consensus pattern (72 bp):
ATTCGACCCGGCGGCTGCTCGCTCTTTGATCAGTGATTCACCAGCCACTATCACATCAATGAATC
CCACCAT
Left flanking sequence: Indices 177026 -- 177525
AAATAGGAAGAAAGAAACACGTCGCCCGCCCGAAATGAATGAATAAAGGTGAGAGAGTGTTACCG
AGATCAATCGGCGAATGGTTTCTATATTGCTCGCTGATATTGCTTCGTCTATCGCTATTTGTTCT
CCCTTTTTTTCCCCGGTGCTCATCTTCTGAGACGCTCATAAAGTGATTGTTCGATCCGCCTGCAA
AGAACTAACTGTTATGTGAGAATCTATTTCACCGCAATATTCGTTCTTTTGGGGTTAATGTTCTC
AATGGTGGATTGATCATCCGCCATCCTTTTGGTTCTGGGAGGACTCCCTGGAGGGAGAGTTATAA
AACCTGCGATTGCTACTGGATAACCTCCTTTTACTTTATCAGTGATAGACCCTTTCACCTTCCTA
TTCGTTCGCCAAATCTTGTTCGGTTCCATCCAAGCTCGGTTTTGTCTGAATATTTGTGGAGGAAG
AATCAGCGGTTCACCAGCCACTACATCTGCGGATCCCGCCGAATC
Right flanking sequence: Indices 177723 -- 178222
CATCCGGGGATCCCACCTTATTATCAAACCTGGCGGCTCGGTTGATTGGCACTCCTGTAGGCTTA
TCTTGCATACGAATTATTGGGGTCCCGGGTCCTGCATCCGCCAAGAACATTTCTTCCCTTGGGCG
TAAAACTGGGGATTGCGAAGCGTTTCCACATGATGAGGGAGAACTGGGATTAGATCTCGGAGATA
ATCGACTCAAATAGATGCTCATCATAAGCTTTTTTCTTGTTCCTTCTCCTCTTCCTATTGATCAG
AAGCATCTTCGGGCAGCCAATGGAAATAGTTGACCGACCGAATTGGATTTATCAATGGATCTGTT
CGAGAGAGCTCGATCGAAAGAGCATGAAAGAGCTCAGGAGGGCGATCGGATGTTCTTAGTTGAAA
GTGCTCGCTGAGATGTATCATTATACCCATTAACGATGATGCTCCATGCTCGAAATGATTGGTAT
TCAAATGCATGTTCTAGGGATGAGAGGAAGAGCATGTTGCTGGCA
Found at i:177712 original size:72 final size:69
Alignment explanation
Indices: 177490--177744 Score: 258
Period size: 72 Copynumber: 3.5 Consensus size: 69
177480 GAATCAGCGG
* * * * *
177490 TTCACCAGCCACTACATCTGCGGATCCCGCCGAATCATTCGACCTGGCGGCTGCTCGCTCTTTGA
1 TTCACCAGCCACTACATCCGGGGATCCCACC---TTATTCGACCCGGCGGCTGCTCGCTCTTTGA
177555 TCAGTGA
63 TCAGTGA
** * *** * * *
177562 TTCACCAGCCACTGGATCTATGAATAATCTCTCCGAAATATTCGACCCGGCGGCTGCTCGCTCTT
1 TTCACCAGCCACTACATC--CG-GGGATCCCACC---TTATTCGACCCGGCGGCTGCTCGCTCTT
177627 TGATCAGTGA
60 TGATCAGTGA
* *
177637 TTCACCAGCCACTTTCACATCCGTGGATCCCACCTTATTCGACCCGGCGGCTGCTCGCTTTTTGA
1 TTCACCAGCCAC--T-ACATCCGGGGATCCCACCTTATTCGACCCGGCGGCTGCTCGCTCTTTGA
177702 TCAGTGA
63 TCAGTGA
177709 TTCACCAGCCACTACATCCGGGGATCCCACCTTATT
1 TTCACCAGCCACTACATCCGGGGATCCCACCTTATT
177745 ATCAAACCTG
Statistics
Matches: 156, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
69 22 0.14
70 1 0.01
72 64 0.41
74 2 0.01
75 62 0.40
76 1 0.01
77 1 0.01
78 3 0.02
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.27
Consensus pattern (69 bp):
TTCACCAGCCACTACATCCGGGGATCCCACCTTATTCGACCCGGCGGCTGCTCGCTCTTTGATCA
GTGA
Left flanking sequence: Indices 176990 -- 177489
GCAAGAGCCTTTTTTATTATTCCAATATAGGGCCTTAAATAGGAAGAAAGAAACACGTCGCCCGC
CCGAAATGAATGAATAAAGGTGAGAGAGTGTTACCGAGATCAATCGGCGAATGGTTTCTATATTG
CTCGCTGATATTGCTTCGTCTATCGCTATTTGTTCTCCCTTTTTTTCCCCGGTGCTCATCTTCTG
AGACGCTCATAAAGTGATTGTTCGATCCGCCTGCAAAGAACTAACTGTTATGTGAGAATCTATTT
CACCGCAATATTCGTTCTTTTGGGGTTAATGTTCTCAATGGTGGATTGATCATCCGCCATCCTTT
TGGTTCTGGGAGGACTCCCTGGAGGGAGAGTTATAAAACCTGCGATTGCTACTGGATAACCTCCT
TTTACTTTATCAGTGATAGACCCTTTCACCTTCCTATTCGTTCGCCAAATCTTGTTCGGTTCCAT
CCAAGCTCGGTTTTGTCTGAATATTTGTGGAGGAAGAATCAGCGG
Right flanking sequence: Indices 177745 -- 178244
ATCAAACCTGGCGGCTCGGTTGATTGGCACTCCTGTAGGCTTATCTTGCATACGAATTATTGGGG
TCCCGGGTCCTGCATCCGCCAAGAACATTTCTTCCCTTGGGCGTAAAACTGGGGATTGCGAAGCG
TTTCCACATGATGAGGGAGAACTGGGATTAGATCTCGGAGATAATCGACTCAAATAGATGCTCAT
CATAAGCTTTTTTCTTGTTCCTTCTCCTCTTCCTATTGATCAGAAGCATCTTCGGGCAGCCAATG
GAAATAGTTGACCGACCGAATTGGATTTATCAATGGATCTGTTCGAGAGAGCTCGATCGAAAGAG
CATGAAAGAGCTCAGGAGGGCGATCGGATGTTCTTAGTTGAAAGTGCTCGCTGAGATGTATCATT
ATACCCATTAACGATGATGCTCCATGCTCGAAATGATTGGTATTCAAATGCATGTTCTAGGGATG
AGAGGAAGAGCATGTTGCTGGCAAGCGTAAGCAATAAGTGCCTTT
Found at i:184448 original size:20 final size:20
Alignment explanation
Indices: 184423--184463 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
184413 TCTCGTGAGG
184423 TAGATATAGAGATAGAGATA
1 TAGATATAGAGATAGAGATA
* *
184443 TAGATATAGATATAGATATA
1 TAGATATAGAGATAGAGATA
184463 T
1 T
184464 CTAGAGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.32
Consensus pattern (20 bp):
TAGATATAGAGATAGAGATA
Left flanking sequence: Indices 183923 -- 184422
TTGATTTCTTTCTTCATTCGGCGACGTTTGATTAATCATTTTTGGTGAATGGCTAGCAATAATAA
CCACAACTCCTCGAAAGTCAACTGCTTTTTGCAGGATCGAATATGGACCACTGACAAAATCATAG
CGGAGGAGTCAGGACCTAACTGGCTGAAAAAACCTCGGAACAGGGGAAAACGAATAAGGAACAAG
TGGATATGAGGGGCAAAACATCAGAGCTTTCGCAAGTGATCATATCATGTACGATGCCGCATTCA
ACCGGAATCTTGCATTCATTCGGCCAGGTCGGACTCAATCAAAGGAAATCTCTCGAGCGGGTTGA
AGCATCTCTTCTCTGGGCCTGCTGCTGGTCCTTCCCCTCTCTACGTTCGGGAAAGGTATAACCTC
ATTCGTTGATGCTGGCTGGGAAGAAGACTCGAAGCTGGAGCCCGCACGGAATAACCATGGCAGGT
TCTTCCGGGCGGGGCCCACCGGAGCTATTCGATCTTCTCGTGAGG
Right flanking sequence: Indices 184464 -- 184963
CTAGAGATATCTATCTAGATAGATAGATAGATATATCTAAGATATAATACATCATATAGAAGATC
TATTCTATCTATTCAACGAAATCGATATTGCCTCCGAACAAGCCCGGGGCGAAGAGCCGGGAGGC
GGAGCAATCGACCATGCCACAATGCAATGCAGCAGAGCAGCAATGACACGACCAACCCGCAATGC
AAAGCAAAGCGCCATGCAGAGCAGCAATGGCACGGAACTACCATGCGGACAGGAACCACACGAGG
CTATGTAGGATGCCCATTCTCCAGGTTCAGTATGTGTGCTCGGATGAAGGTTGCTACCGTTGCTG
GCCGAGATTCGATTCCTTCCCTCTAGCTGATCCATTTGCTGATTCTATTTAGCCTTCCATTTTAT
ACAATTTATCGGGAAATAACGTATATAGAAGAATTTGATCGATTAGCCGAGAATACCGCTCCAAC
CTATCAAATCGGGATCATCCGAGCTTTTCTCCCCTTTTTATTAAT
Found at i:184461 original size:6 final size:6
Alignment explanation
Indices: 184432--184462 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
184422 GTAGATATAG
*
184432 AGATAG AGATAT AGATAT AGATAT AGATAT A
1 AGATAT AGATAT AGATAT AGATAT AGATAT A
184463 TCTAGAGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (6 bp):
AGATAT
Left flanking sequence: Indices 183932 -- 184431
TTCTTCATTCGGCGACGTTTGATTAATCATTTTTGGTGAATGGCTAGCAATAATAACCACAACTC
CTCGAAAGTCAACTGCTTTTTGCAGGATCGAATATGGACCACTGACAAAATCATAGCGGAGGAGT
CAGGACCTAACTGGCTGAAAAAACCTCGGAACAGGGGAAAACGAATAAGGAACAAGTGGATATGA
GGGGCAAAACATCAGAGCTTTCGCAAGTGATCATATCATGTACGATGCCGCATTCAACCGGAATC
TTGCATTCATTCGGCCAGGTCGGACTCAATCAAAGGAAATCTCTCGAGCGGGTTGAAGCATCTCT
TCTCTGGGCCTGCTGCTGGTCCTTCCCCTCTCTACGTTCGGGAAAGGTATAACCTCATTCGTTGA
TGCTGGCTGGGAAGAAGACTCGAAGCTGGAGCCCGCACGGAATAACCATGGCAGGTTCTTCCGGG
CGGGGCCCACCGGAGCTATTCGATCTTCTCGTGAGGTAGATATAG
Right flanking sequence: Indices 184463 -- 184962
TCTAGAGATATCTATCTAGATAGATAGATAGATATATCTAAGATATAATACATCATATAGAAGAT
CTATTCTATCTATTCAACGAAATCGATATTGCCTCCGAACAAGCCCGGGGCGAAGAGCCGGGAGG
CGGAGCAATCGACCATGCCACAATGCAATGCAGCAGAGCAGCAATGACACGACCAACCCGCAATG
CAAAGCAAAGCGCCATGCAGAGCAGCAATGGCACGGAACTACCATGCGGACAGGAACCACACGAG
GCTATGTAGGATGCCCATTCTCCAGGTTCAGTATGTGTGCTCGGATGAAGGTTGCTACCGTTGCT
GGCCGAGATTCGATTCCTTCCCTCTAGCTGATCCATTTGCTGATTCTATTTAGCCTTCCATTTTA
TACAATTTATCGGGAAATAACGTATATAGAAGAATTTGATCGATTAGCCGAGAATACCGCTCCAA
CCTATCAAATCGGGATCATCCGAGCTTTTCTCCCCTTTTTATTAA
Found at i:184472 original size:36 final size:36
Alignment explanation
Indices: 184429--184507 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 36
184419 GAGGTAGATA
* *
184429 TAGAGATAGAGATATAGATATAGATATAGATATATC
1 TAGAGATAGAGATATAGATAGAGAGATAGATATATC
*** * *
184465 TAGAGATATCTATCTAGATAGATAGATAGATATATC
1 TAGAGATAGAGATATAGATAGAGAGATAGATATATC
184501 TA-AGATA
1 TAGAGATA
184508 TAATACATCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 5 0.14
36 31 0.86
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.32
Consensus pattern (36 bp):
TAGAGATAGAGATATAGATAGAGAGATAGATATATC
Left flanking sequence: Indices 183929 -- 184428
TCTTTCTTCATTCGGCGACGTTTGATTAATCATTTTTGGTGAATGGCTAGCAATAATAACCACAA
CTCCTCGAAAGTCAACTGCTTTTTGCAGGATCGAATATGGACCACTGACAAAATCATAGCGGAGG
AGTCAGGACCTAACTGGCTGAAAAAACCTCGGAACAGGGGAAAACGAATAAGGAACAAGTGGATA
TGAGGGGCAAAACATCAGAGCTTTCGCAAGTGATCATATCATGTACGATGCCGCATTCAACCGGA
ATCTTGCATTCATTCGGCCAGGTCGGACTCAATCAAAGGAAATCTCTCGAGCGGGTTGAAGCATC
TCTTCTCTGGGCCTGCTGCTGGTCCTTCCCCTCTCTACGTTCGGGAAAGGTATAACCTCATTCGT
TGATGCTGGCTGGGAAGAAGACTCGAAGCTGGAGCCCGCACGGAATAACCATGGCAGGTTCTTCC
GGGCGGGGCCCACCGGAGCTATTCGATCTTCTCGTGAGGTAGATA
Right flanking sequence: Indices 184508 -- 185007
TAATACATCATATAGAAGATCTATTCTATCTATTCAACGAAATCGATATTGCCTCCGAACAAGCC
CGGGGCGAAGAGCCGGGAGGCGGAGCAATCGACCATGCCACAATGCAATGCAGCAGAGCAGCAAT
GACACGACCAACCCGCAATGCAAAGCAAAGCGCCATGCAGAGCAGCAATGGCACGGAACTACCAT
GCGGACAGGAACCACACGAGGCTATGTAGGATGCCCATTCTCCAGGTTCAGTATGTGTGCTCGGA
TGAAGGTTGCTACCGTTGCTGGCCGAGATTCGATTCCTTCCCTCTAGCTGATCCATTTGCTGATT
CTATTTAGCCTTCCATTTTATACAATTTATCGGGAAATAACGTATATAGAAGAATTTGATCGATT
AGCCGAGAATACCGCTCCAACCTATCAAATCGGGATCATCCGAGCTTTTCTCCCCTTTTTATTAA
TCGAATTAATAGGGTGCGGGTGTAGCGGAAGCTTTGCTTATGGCG
Found at i:198157 original size:12 final size:12
Alignment explanation
Indices: 198140--198174 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
198130 GTTAGGTACT
198140 GACACTCGACCG
1 GACACTCGACCG
198152 GACACTCGACCG
1 GACACTCGACCG
198164 GACACTCGACC
1 GACACTCGACC
198175 AACGGTCGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.43, G:0.23, T:0.09
Consensus pattern (12 bp):
GACACTCGACCG
Left flanking sequence: Indices 197640 -- 198139
CCATATGAATAGAAAAAAAAGGGTCCGGGCAGGAAACCCCAAGGGCGGGTCCGGAGCAGGTGCTA
AGGATGGGAGTGAGAAGGGGGGAGTCTTCCGCTCTATACTGCACATTGGAGGGTGTGAGGGAGGC
ACTGTACTGTCCGCCCCAGATCCGCCTCCTTTTCTTCCAAATAAGGTTTGCCCGATTCTGCTGAA
CCAACCCGATAGGGCCTATTTATGAAATAGGGAGGTGTTCCTCGACCCCGCGCTGTATCGCGGAG
CTCCAGAATTTCCCAAATTGATCAACCTCCCTATCCATTCATTCATCTAATAGGGTTCAACGTAT
ACGAGAAGTCGCTGGTTAAGCTCTCTATATCACCGACCAGGAGCCGGGAGCATTCAGATCGAAAC
TCTGTAGTCCTGCTCCGTCACGGGACCTTCCTTTTTTCCGATGATTAATGGCGAAGTCTAATTTG
GGAAAAAATTAGGGCCTTTAGGCGTAAGCAGGACCGTTAGGTACT
Right flanking sequence: Indices 198175 -- 198674
AACGGTCGAGGGATAACCCTATGAATTGTGGGAAAAAATTGAGGGGTTGGAGGAGCGACAGTATG
AGGCAGTACGAGGACCTGTGCACTCTATTTATGTTTATATCTGCCCCATAGCCCTATCTCTTCAT
TTATTCACAATCGAAAATGAAGAATAGGGCGGCTCTTTATAGCGCTAGGAATGGACCGGAACAGT
AAGTGTGTGTCGGTGTTCACGGGCAGGAGGGCCCGTATGCGGTGTAGGTCTCTTGCCATCGACAG
AGAGACGGACGACTACCAGTCAGAGTCTCAGGCGTTACACAACAGCATGCCAAGGGCCTACTTCA
TATATTACCTGTATCTAATGCCGAGACGTTGGGGAATAGGCAGATGCCCCCCCTTAGATGAATCA
ATAAAGGTCAAGGAAGAGCCAGAGTCCAAACCTCTTATCACGAGAGATGAGTTTGACGCGAATCT
TTGGAGTACTACGCCCTTCATCCTTCTCTTCTCTCCAGGGGCAGT
Found at i:207485 original size:18 final size:18
Alignment explanation
Indices: 207462--207498 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
207452 AACGCCCCTA
*
207462 TATCTGACCAGATCTGTG
1 TATCTGAACAGATCTGTG
*
207480 TATCTGAATAGATCTGTG
1 TATCTGAACAGATCTGTG
207498 T
1 T
207499 TTTTTCCCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (18 bp):
TATCTGAACAGATCTGTG
Left flanking sequence: Indices 206962 -- 207461
CCGCGACCTACCCGGCCGGGAATCGGTCTATTTATTCATCGAATAGGGACGACGAACCGGGCCTG
CGGCTCCGACCCCAGCACCGTTGCATTGGCCGGCTCAATACCCTAATTGATCATTGCAGCGAATA
AGTTATGGTGGCGAACACTTCATGATCGAGCCGGCGCGGCGGACCTATTCATTACGATTTTTCCC
GCCCGGGCTATCGTTGCTCGGCGAAATCCCGGCGACTCCCCCCACAACCCGAAGAGACGAGGTCC
CGAGGCCTTTGCATTATCAGGTGACCACAAGCTAAGGCCTAAGCGAGGCTCAGCCCATTACACGC
TATCATATACGCTAAGGGTAACAAGATGACGATGGCCAGGAGAAGTCGCCCGGATAAGGAAAGAC
CAGGGTCTCTTAGTATCTATCTCTCGTGCAAAGTCCTTGTCAACGATCCAAGGTCTTTTGTTGTC
ACGAGGTGATCACGATCCAGGGTCTCTTAGTATCTAACGCCCCTA
Right flanking sequence: Indices 207499 -- 207998
TTTTTCCCCCATTCACTATTCGGATCCGGGAGGATATCTCTGAATTTCTATCTCTTGTGGAGTCT
TCCTCTTAATATCCATCTAGCTCTAGCCCACAAAAGAGGTGCTTGATCGAGTTCATTGGTCGTTC
CCCGAAGTGTTATGTGCTCTTATTCCTCTCCCTGATCGATTTTTGCGATGCCAATAGCCGCAAGG
GTTTACCGCTGCGCTCGGGTTATACCCTTCAATAAGAGTGGAGCGAAATCGGGGTCCGGTCATCC
CTTATACTCTCTACGTTCGTATAAGTGGTCCGCCTCGAACCCTCGGCCTTATTCATTATTGGAAA
GAGATTTGGGCCTCCTCCTAGTGAATTTGAATAGGGTTTGTTCTCTCTCCCAACTGAGGAATCAC
GAGGATATCCTTCTCCTCGTTCTTGACCCGGCCCCCGCTGCACTCGAGGGCCTTGGTTGGTGGAA
GAAGTAGGGGCTGTGAGAAGCACCAGCAGCTAGCCGGCAGAGGAT
Found at i:208781 original size:12 final size:12
Alignment explanation
Indices: 208764--208798 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
208754 TAACGGTACT
208764 GACACTCGACCG
1 GACACTCGACCG
208776 GACACTCGACCG
1 GACACTCGACCG
208788 GACACTCGACC
1 GACACTCGACC
208799 AACGGGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.43, G:0.23, T:0.09
Consensus pattern (12 bp):
GACACTCGACCG
Left flanking sequence: Indices 208264 -- 208763
CCACATGAAACAAAGTGAACTCGTGCAGAACCCACAAAACTGGCCCGGCATTTCCCTATATTGAG
TTCGGAGACCGTCCCTGCCTTTTTCAGGTTCGGTCCTCAACGGGTCTGGTCTTGTGCTCGACGCC
GACCAGAGGTCTTCTTCAATCGCCCCCGACCATCAAGAACCAGTATGTGACCCTTATTGGATAGG
ATCCGGCGGTCCTTCCGGGTTCCTATGGTGAAAAACCACAGTTACCTCACGGTTCCTATTCCCCC
TTATTTCGTTCCGGTCCTTACCGTCGCTCACCAGCGCTGGCCCGGGTGCCGCCTTGACTACCAAT
GGCCGGCCCGCCCGCCCGCCTTTCGGAGCGGGGTGGTGTTGCGCTTCGCTTGCCAATCCGTTCCC
TAAAGCCGATCTTTCTATCACGGGTCTTATACTTTTCCATCCGAGGTCCTTCCCCTCTCTACGTT
CGGGAAAGGTATAACCTTCAGGCGTAAGCAGGACCTAACGGTACT
Right flanking sequence: Indices 208799 -- 209298
AACGGGAGAGGACCAGTTAGTAATTTTCCGATTGGGATTAACCTTTCCTCAATTCGTATCGGGAC
TGAATCGGTGGGTGGCGTCGCAGAGCTGGCCTTTCTCATTACAATATCAGCACAATGACGCATAG
CAATTTGTTCCAACATAATAGAACGACATTGTACAACGATGATGTAGAATGATAGACCCCGGTGA
CAAGAAACCTCGGCCCGGCCGCAATCCAATGATTTTGCATCGCAAGCTTATTCAATTCATTTTAT
AATGATAATGAACAGCTCATACTTCTCCTTCGGATCCCCAAACTATTGTCAATCCCAGATCCTTC
CAGGGAATTGATTCCCGAGTAAAGGCCGGGGAATAGGGAGATAGAGCGGACCGGGAAAGGTCCGA
AGCTGAGTGAAGGGAACTTAACGAAGAGGGGTTATCCCTGAACGATCACCTATCATATTAAGGGG
AGGCCCCACTGCTATGGCTTCCTCTCCCAAGTGCTCTTCCATTTG
Found at i:221662 original size:24 final size:24
Alignment explanation
Indices: 221630--221679 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
221620 CCGCCCCTCT
*
221630 CCCGTTGGTTGAGTGTCTAAAGAC
1 CCCGTTGGTCGAGTGTCTAAAGAC
221654 CCCGTTGGTCGAGTGTCTAAAGAC
1 CCCGTTGGTCGAGTGTCTAAAGAC
221678 CC
1 CC
221680 GTTTTCCCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (24 bp):
CCCGTTGGTCGAGTGTCTAAAGAC
Left flanking sequence: Indices 221130 -- 221629
CCGGACCCGCCCGCAGGGTTCGGGTTACCTTCCGAGTACCAATTCAAGAACTGGAGGCCGGCGAC
CACACAAATGCTATCTGCAGATATAGCCTTGGCCTTCCCCTCTCTACGTTCGGGAAAGGTATAAC
CTTGGATCGGCACGATAAAGACTTCACCCATTTCGTCCCAAGTCGTCATTCATTGCTTTGCTGCG
ATGGATCAATAGCTTTGTCCGCCGCACCACCGGAACAAAATCAATCCCTGGCCGTCCTTCCCCTC
TCTACGTTCGGGAAAGGTATAACCTTTGCTGCGACAAGCATTTGTTACTTGGCCCAATCGAAGCA
TCCTTGGTGATCCCTCGGGCTTGTTCCTGGTTATAACTCTTTATATACGTTCTATCCGGCCGGGG
TAATAACACAATTCAGAGGTCCTCATTCCCCACAAGATCGTTGGTGGCAGAATCCAGCTGGTTCT
AGTTGGCAGGGAAAATTGCTGAATCAAGATTTTAGCCGCCCCTCT
Right flanking sequence: Indices 221680 -- 222179
GTTTTCCCCTCCATGCATTCCCGGAGAGACCTTCTCCGCGTGGAGCTTCGGCCTAGAAGAATTTC
TAGGAATACGAAGAAAACACTTTCATTTCGAAATAGCATGTTTGGAAGGTGCGTACACGCCTCCC
CCCGGGTTATTGCAGGATACCATCGAAATGGTCAAAGACGTCTAATTGAATGGAGATTACGAGCT
GGGAAGAGAACATGGCCTGGCCATTCCTGCTTACGATTCGCGCGGTCATTGCTTTGTCTTCTTCC
GTGCCCTGCTCCTGCTCATATTAACCGGTACTTTCTTTTGCAGGGGTCAAGAAGAATGGGATTGA
GATTGTGCAGGACCGATCAAATGCCATACTTCTTCTAAGGATTAGCTCAGAACCGGTCACTTCGG
AGCCAAAATGAAGCTTTAACGAAACGAGTGGACCCAGATAAGTAATTCATAGGGGGGGCCTGTTG
AGTCGACTGCCAGCTCATAAATTGGTAATTTCGCCAACTGAACGA
Found at i:224515 original size:29 final size:29
Alignment explanation
Indices: 224473--224533 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
224463 ACGAATCCTC
*
224473 AGGGTCTTTAGACACTCGACCAACGGGAG
1 AGGGTCTTTAGACACTCGACCAACGAGAG
224502 AGGGTCTTTAGACACTCGACCAACGAGAG
1 AGGGTCTTTAGACACTCGACCAACGAGAG
224531 AGG
1 AGG
224534 AATTTCCTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.23, G:0.31, T:0.16
Consensus pattern (29 bp):
AGGGTCTTTAGACACTCGACCAACGAGAG
Left flanking sequence: Indices 223973 -- 224472
TTCATTATGCGTTTGGGCATCCCTTACTTTTGATGTTCCAACTCCGAACATGAAAAAACTGAAGC
ACAAATGAAGTGTCCTTCGATCCCCTTCAATTGAATAGATCCCGTACCCGCGCCAGCGTACGGTT
CGGCTCCTCCCTCCTTGGCAGTCAGGGAAAGTCCCTACCGACTTTCCCGTCCGCCGAGGATTATC
CCTTTCCTGATAAGGGAAGGAAGGGGAGTCGGTTCTCAAAAGCAGCCTGGGGCTTCGCTGCCCCC
CCACCCCTTAAATCAAAGAAGGGGTGAGGGGGAGATCGATCATCTATTTCCTTCTTTTTTCCGAA
ACACTGGCGACGACGATCCAACCAGTCCACCTCCATGCAAGTGAGCCGCCAAGCCCGCTACGCCC
CCGCGATCTACATGCCGAAATTCGACACTAGAACTGGGTGGGCACTCCACGTTATACCTTTCCCG
AGCGTAGCGAGGGGAAGGACCGGGAAATTGGATGGACGAATCCTC
Right flanking sequence: Indices 224534 -- 225033
AATTTCCTTTCCTCTCTCGTTGGTCGAGGGAACGACGAAAAGACTCTCGTCTTCGACAGCAAGGC
GGCGCAGTTAGTGAACCAGAGATACCGGGATGGGGTTTACCTTCTCCGTCGAGAGCGATGCAACC
GATGTGCCGGCCTAGTCAGACCTACACGGGGGTCAAGCTGGGCTGGGGGAGGTCGGCTGGTTGAC
GAGCGGCGGGGTACTCGGCTTGGAGATGTACCTCTGGTTCCGCCGGCCGCGGGGCCGCATCCCGG
TGGGTTCTTCTTGGCCAGGCCGGCCGCCCCCCTATTCAATAAAGAAAGAAATAAGCCGCATCCAC
ATGAACTGCGGTACTTCGATACGACGCTCAAGAGCAGACATTGGACAACATATTCTCATGGCTAG
TCGAAAAAGGTCTTCTTGACCCTATTCTAGCTGACCTCTTCTTGGCTAATGATTCAAGAATTTAT
TCTGATTGGTTTTTCGCTACTGACCTCGTTCGACCTCGGAAAATG
Found at i:225499 original size:18 final size:18
Alignment explanation
Indices: 225478--225527 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
225468 CACTTGGAAT
225478 TCTTAGTGCATCTCAAAC
1 TCTTAGTGCATCTCAAAC
* *
225496 TCTTAGTACATCTCAAAT
1 TCTTAGTGCATCTCAAAC
225514 TCTTAGTGCATCTC
1 TCTTAGTGCATCTC
225528 TTTCTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (18 bp):
TCTTAGTGCATCTCAAAC
Left flanking sequence: Indices 224978 -- 225477
CAAGAATTTATTCTGATTGGTTTTTCGCTACTGACCTCGTTCGACCTCGGAAAATGGACGCGTCA
GAAATCAGTATGGTTCTTCCCGTATGAAGAGCGAACATACATCATCATGGGTAATATCAGACCTA
TTAAGCAAGTGAGTGAGGCGACAGTGGATTTGAGTTTATGTGTCTGGGCATTCGAGACATAGTTC
TGGTGCCTGCCACAGCACGAGCCCCGCCCTTGATGAACATCTAGAGCCAACATTGGGACCCGTCC
TTGGAATGGCAGCGCATGTCCCCGAGGTTATACCTTTCCCGAACGTAGAGAGGGGAAGGCACAGC
TCAAGCCTGTCGGCCAGCGTGCCGGATCTTCCTCTTTTGTGCGAGCACTATGGTTCTTTCCGAAG
TGACTCCACTCCACCATGCTCTCCCGTGGATCTACGGGAAAAGCCGGCTGGGTGTTGTACCGGTG
GTACGAATAGATATGAGTATTTCACCGTAGCCCTGCACTTGGAAT
Right flanking sequence: Indices 225528 -- 226027
TTTCTTTTTAGCATCTCAAATTCTTGTCCGTATGGGTGGCAACGGATGCGGCTGCTTCGTGTTGA
TCCTGTGTGACGGTATCCGGTGTGGTGGCTGATTCGCGGCTTTACCAACAAAGGGGGGTAAAGCA
AGGGAGAGCGTGGTCATGCGAGGCCTTCGACAGCGATGTCGGTTCCTCCCTCGCCCCCGTCTCTT
CGTTATTCTGCATGGTGAAACAGCTGGGGAAAGCGCGAAGCGCTTTCAAGGTGCCCCCCCCCTAT
GAATCCAAAAAGGGGGGGCGGAGCGCCCCCCTTCTTTACCTTCAGGGGGGGGGGTTCAGGGTAGG
TTATTTCTTGGAATCAAATCCTTTTTTCCGAAAACCGAGGTTATACCTTTCCCGAACGTAGAGAG
GGGAAGGAACGCTTTTCGCCTAAAAAATGGGGGGCAGCTCCGCTCCTTTGCGTCAAGGTATTCTT
CCCGTTCGATGTTGGGTGATCGAACCTCTCCCTCTGTTTCCGAAA
Found at i:236575 original size:22 final size:22
Alignment explanation
Indices: 236547--236589 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
236537 GTCGTCCAGC
* *
236547 GGAGCCTAGAGGGAGGTTACTT
1 GGAGCCTAGAAGAAGGTTACTT
236569 GGAGCCTAGAAGAAGGTTACT
1 GGAGCCTAGAAGAAGGTTACT
236590 CGCGCAGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.14, G:0.37, T:0.21
Consensus pattern (22 bp):
GGAGCCTAGAAGAAGGTTACTT
Left flanking sequence: Indices 236047 -- 236546
GAAGGAATTTGGGGTGATTCTTTTCTCCGGAAGAAAACCCCGTCCCCCAAAATCCCAAACCCCTC
AATTTGCTCCGAATAATCAATGGGGATACCCCATTATTCATTCGAAACTAATGAATGTCGGGTCC
GGGGGGGTTTATGTTGGTGATTCAAGTTGGGTTTCGGGGGGTCGAGCAAACTCCCTCCTTGGACG
AGCACTTCGGACGTAGAACCGGGTTGCGCTGCTTGACGCTCCGATCGTCTCTTTCTTCTTATTAG
TAGGGTGCGCGGCCGGGACCATCATCTGCAGGGATGTTCGAGACAGCTCTATGCCAGTACGACAG
AATATGCGTTAGAAAGGTAAATCCCTATAGCTGTCCCCCGCGGCAATAGTACATCAACGCCGGAC
GGGCCGGTCAATATCGTGGCAACGTCAACCTAGGTGGGAATATTTGATCCCAGGGAACCATCACA
AGGACGGTCAGACGACGGGGGGAACGTCGACGACTGTCGTCCAGC
Right flanking sequence: Indices 236590 -- 237089
CGCGCAGGCAGCTGACTCCTTCTCAATAGAAATGAATAGATGGGGCAGCTGGCTGGTCAATCTCA
GAGATCTGATCGGCCGGCGGGCGAAAAACCGGAGACGGACGGCCACGGTCCCAACCTTACCAGCA
CCGGAGGGACAGATATTGACTAGTGAACCTTTCTCCCACTTCGTTCGATAAGGATCAAAGGACCT
CTAGAGTATCATGACGACCTGGTCGAGAGAGTGAACAAACGATACATCGGTGTGAAATTCGATAT
TTGGTGAAAGAGGTTGGTTATAGCAAGGCCTGAAGTGCGCAGCTTACGACAAGAGAAAAGAAAAT
CCCGACCGAGGCGACCTGGCGCCTCATCCTGAAAACGGTGCCCGCTCGCTCCGCGGGGCTCAGCG
GCAGGGCAGGGAGAAAGAAGGGTTCCTTCATTCTGCCCCCCACCCCCTTCAGATGGGAGGGAGTT
AACACCCCCCCCCAGGAGCACCCGGAACCTCCAAGGAAAGAGAGA
Found at i:238931 original size:18 final size:18
Alignment explanation
Indices: 238903--238957 Score: 83
Period size: 18 Copynumber: 3.1 Consensus size: 18
238893 GAGGCATAAG
*
238903 GAGGTCCGTTAGGAACTC
1 GAGGACCGTTAGGAACTC
*
238921 TAGGACCGTTAGGAACTC
1 GAGGACCGTTAGGAACTC
*
238939 GAGGACCGTTAGGTACTC
1 GAGGACCGTTAGGAACTC
238957 G
1 G
238958 CGAAATTCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (18 bp):
GAGGACCGTTAGGAACTC
Left flanking sequence: Indices 238403 -- 238902
CCCGGATTACTCGGATCGGACCAGCAAGAGGGGCTAGTTCTCGCCGGGTCGGAAAAACCATGATC
TGCCCAACCTAAAAAGGGTTGGAAAGGCCCTCGTCCCAGCCAGCCCCGCTATTCTTGATTATGAA
ATGCCGAGGGCGAAGAAGAGAGCAAGGCTAGAGGCGGTTGAGTCATCCATGAAGTCCATCATTTC
GGTTGGCTGGCTGTACCGGTAATGTAGCTGGCTCACGTAAGGTTGGCAGATGCAATCCAAAACGA
ATTTGTATAGCTCGTTGAACAAACACCATAGGCAATTCATTTACATAAGGAAAGGTAAGCCGCCC
TTGTATGGCAAAAAGGCCATGGAAAGGTGCGCGAAATCTACTGGATTGAAAAAGTTGGCATCGGA
TTAATCAATGACCGAGAGAAAGCACAACTCGTGTTTGGGTAAAGTGTAGTTGGTCGGCTAATCAG
GTCTGGTGGTCGGGGCAACACGAGGCGTAAGGCGTGAGGCATAAG
Right flanking sequence: Indices 238958 -- 239457
CGAAATTCTTTTGCTTCAGCAAGCGACGCTGCGGAATGAAGTTTCCTGATGAAGGGCCAGCCCCA
ACAATTAATGAGCCCGCTTCTTCGAACAACGGGTCCGGCGGCTACCCGAAATGAAGGAACCACTC
GGCTTGTGCTTGGAAGTGGATTCGAACCACTGACACAGGGATTTTAAGTCCTTCGCTCTGACCAA
CTGAGCTACCTAAACCCGCCCGGAAAATCGCTATCAATTATTATCATTATTACAATTATTCAATT
CCTTACAAGATTTGGAAAGATTCTTATTGCAATTGATCCGGGAAAAACACCGGAGGAAAGATTAC
GATTGATTCGGGAGAAACACTAGAGAGTTGACCCTATCAATTATTGAAAAGAAGGGGGGAGTGAA
GTCAGATCCTTCTGTAAGAAGAGAGGGTCTTCCCAGCCGTTGACCAATCCTGGCATTGCTTGCCA
ACTCTTCCCGATTATCAAGAAGAGAGCGTTCATCTATATGATCAA
Found at i:256466 original size:21 final size:22
Alignment explanation
Indices: 256441--256488 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
256431 CTGAAGCGCT
*
256441 ATCGTGTAACCTG-AATCAAAA
1 ATCGTGTAACCTGTAACCAAAA
256462 ATCGTGTAACCTGTAACCAAAA
1 ATCGTGTAACCTGTAACCAAAA
*
256484 TTCGT
1 ATCGT
256489 TTGTTTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.27
Consensus pattern (22 bp):
ATCGTGTAACCTGTAACCAAAA
Left flanking sequence: Indices 255941 -- 256440
GTCGACAAAAGGATCATATCGATCGGTCCGATTGGTCGAATTCCCCACCCAAGCCCCAGCCTTTG
CTTCGGCCTATCGGTCCCTTTTCTTCTCCGCGTTCGTAAGAGGTATACCTCCTCCCCGCGTTCGT
AAAAGGTATACCCCTGCCAATAGCTCCTACGTATGGGGTGGTCGATGTGGGGATGATCCCTCTTC
CCCGACTATTGATTGAGTCTCCCAGTCAAATGGAGTTGCCAGTCGATCTCCATAATTCGTCCGGG
GCGGCCAAATACTAATCTTTTTCGATCCCTTTCCCATGATATCATAATATCGGGATTGACCGTCA
TCGTTTCCCTATCTAATAAATCAATAGAAGGGTTGGATCCTACTCTCCGTTCGTGTCCCTAGGTA
ATCAGATCCGATCAGACTGTTTATGTTTCTTCCAGTCCGGCCATGGTCAGATCTGATCAATCGTC
CTGGTCGTCAAGTTCGCCCAGGTCCCCACTGCATTCTGAAGCGCT
Right flanking sequence: Indices 256489 -- 256988
TTGTTTGGTGAGTTCTAGTTATTTCAGGTGCTAATGAGTGCGTTGATTCGTGTATCAACTTGGCT
TCGTCCGGTGCGGGAATCGATATATCACATGGCCTGAGAAGGGATCGATCTATCCCGCGTAGCCA
TTGGTTTGAACGATCGCTCGATCCGGTAACCAGATAAGCTTCTCACTGGTAATTGTTCAGCCGTC
CAATAGCTGCATATTGCTCAAGGACGGGGTGACCAGGGAGGGACGCTCTGGTGTCGGGTGATGGG
GTGGGTATTCGGCCCGGTCCGGACAGCCTTCCTTTTTCTCCCTTTCGGTTATCATAATAGTGGAT
TAGATCGGGTCAATGAGAACAATAAGGAAGAGCCTCTGCTGGGGCGAAGGCATCATCTCCCGACC
CAATTGTAGCGATGGATTTAGTGTGAATGCATGCGAACAGACCGGGAAGTTGGGCTTAGATTGGG
GACCTGACACGAGACCCGTTCAGTAGAGTGAAGGGTTCAGGCATT
Found at i:261530 original size:17 final size:17
Alignment explanation
Indices: 261508--261541 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
261498 GCAGAGCCAT
*
261508 CCCTACTTTCTATACCC
1 CCCTACTTCCTATACCC
261525 CCCTACTTCCTATACCC
1 CCCTACTTCCTATACCC
261542 GGCGCGCGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.50, G:0.00, T:0.32
Consensus pattern (17 bp):
CCCTACTTCCTATACCC
Left flanking sequence: Indices 261008 -- 261507
GTCGTTGGGACGTTCCTCGGCAGAATATCCAGCGGATAGCGCCACCGCTTTCTCGTGCCAGGATC
TTGTCCAGGCCTACGCCTTCATCCTCTCCATCCCTGGCCCGGCCCGAAGCTTCCTTCCCCCGCTA
CTCGAGTCGCCCCCCCTTTCCCCTAGGCAGAGCCTTTTCCCGCAACACCGGATCGGTACCTCTTC
GATCTTGATCTCCCCCCATTCATGCTTCTCCATGCTCTCATTAACCCCCGGCACCTTATGACAGC
CGGTCCCTTTCATTCCCCCTCACTGGAGGTTATCTGGGAAAACCCCCCTTTCGTCATCCCCAAGG
CCAACGGCGCCCCCTATCTCGGCTTGCTATTTATTATGGGAACGGGGGGCAAGGCCGGCCCTTTT
TAGATTATAGGTGTCCCGTGCCCTATTGATTAGAATGAAGGGCCAGAGCGGGATGGAATCGACCT
ACCTCTCCGTACCCACAGCAGGAAGCGGTACGCAGGCAGAGCCAT
Right flanking sequence: Indices 261542 -- 262041
GGCGCGCGGGCGGACCTATCTCCCTCCTATTACTGAGGTGGTTCCATACTACCCTCAGATCGGAG
ATCACGATATCCCCACTTCATGAGATCGAAGATCGACCCGGATCGAACATCCTTCAATTCTCTCC
TTCCCGAGATCGAACTTCCATTCGATCCTGTTGTTGGTTATACTTCGGTTGGTGAAGTCGCCGAG
CGAATTGAATTGCCCGAGACGTCGTAGAGGTTCGCTGGCGGGACGAGCTCAACTGACCCAGCATG
ATCCACTCATCACGCTAGGAACCACCATAGCATGTCGGTGGCACACTGGGCTTAGCCAGCCGGCC
TCGCTCGATTCATTCATTATTTCTTTATTTGGAGTATCCGGGTGGAGTGAATATAACGCGGAACA
CGTCGGTTTTCTAACGTTGGAGGGCCGAGCAAGGTAGGGGGAGCACACTCAACGACCCTCGACGA
AGGCGGAAGGACACGGAAGAGAAGGCCTCCGAAGAAGTCGGATAA
Found at i:283129 original size:56 final size:56
Alignment explanation
Indices: 283043--283150 Score: 164
Period size: 56 Copynumber: 1.9 Consensus size: 56
283033 AGTGCGGGGC
* * *
283043 GATTCGGCATGATCTCTTTCTATTTGTGACAAGATTGATACTTTGTGTAAATAGGA
1 GATTCGGCATGATCTCATTCTATTTATGACAAGATTGATACTTCGTGTAAATAGGA
*
283099 GATTCGGCATGATC-CATTCATATTTATGACAAGATTGGTACTTCGTGTAAAT
1 GATTCGGCATGATCTCATTC-TATTTATGACAAGATTGATACTTCGTGTAAAT
283151 GGGAATGGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
55 4 0.09
56 43 0.91
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (56 bp):
GATTCGGCATGATCTCATTCTATTTATGACAAGATTGATACTTCGTGTAAATAGGA
Left flanking sequence: Indices 282543 -- 283042
CCCCAGCCAAATTGCATGCGACCCCCGAACATGAGAAATCCTTCGTGTGTGGACCATGCCTCATC
TGATGGAGGAATAGCAATGAGGGTTCTCAAAAGAATGGGTCCTGCAGCCGGCTCGACCTTGTCGT
TCGGGCAGCACGGGCGGGAAAGATGTCGAGCATCTCTCTGCCCAATCCATCGGGAAAAGCACGGC
GGGCGGGACGAACGAGAATAGGTTGACATCACAAATCTTGCTTCGCTCTTTTCTCTCTGCTCCTC
CTCCGTTGCTCCCTTTGCTATGGACGACAGTAAGCACCTGCCCAGGCAAAAGCCCGAGCATAGAG
AATCGAACTAGCCCTAAATGAAATGAATGAATAAATAGAGGGCCGGGCAGCGCTTTCGGGCCTAT
AAAGAGGTTCACATCCAAAGCCGCCTGCCTCGAGCCTTGGGTTATCCCAGCCACGAGTTTCTTAT
TTCGATATAGGGGTGGACGCAGCATCAGTACCCGGAGTGCGGGGC
Right flanking sequence: Indices 283151 -- 283650
GGGAATGGATGAACTCGTTTTTCCGGCTCCCGCGAAATGAGATTCGGATCAATCGGATATAATAA
TGTCTAGTGAGGAGATCGGATATTCGTGACAATTTTTCACAGTGCTGGTCCCCAATGAATGTCGC
TGAATGAGCAGCGGCCAAACGTCCGTCGCTTCGGCCGACCAAGAAGTGATAAGAATGGTCTTTTC
CTATTGCTCTTACCGTGCGCTGCATCTTTGGAAGAGACCTGGGTGATCACTGAACATGATTGCTA
ACGTATACACTATACGGACAAGTTATTCCCGGTACGGGATGTGAAAAGGAGGGTAGTTCGGGTGG
TACTCAATACTGTGGCGCTGTAATCTCAAGTTTCCCTCGCTTTTCCCGTTCTCCGGCAGGGGAAA
GTCAATGTGGCTGTCCCGCCATGACTGAGGGAACAACCGCCAATCTCATCGGTAGAGGATCACGA
AATTGCATCTGCGGCAGTTAATGACCCAGCAAGCGGAGACCGAGC
Found at i:286005 original size:12 final size:12
Alignment explanation
Indices: 285988--286022 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
285978 GTTAGGTACT
285988 GACACTCGACCG
1 GACACTCGACCG
286000 GACACTCGACCG
1 GACACTCGACCG
286012 GACACTCGACC
1 GACACTCGACC
286023 AACGGGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.43, G:0.23, T:0.09
Consensus pattern (12 bp):
GACACTCGACCG
Left flanking sequence: Indices 285488 -- 285987
GAGCTCCTCGGGATTATGAATATGAGAGAGAGATAGGGCCCGCCGCCCGCCCGAGGCCCCGCTAG
CTCTCTGATATCCCTGTTCGACACCAGGCTCTTGGGAAGAAGTGCTTGAAGCATTCTATCAGGCA
GTTGTCCTCTCTCGACTTGATGCCCACGCACCCATTCCAATTTGTACCCTTTGGTATCAGAGCCT
CCCCATATCCCCCCTGCTATGATGTGGAATGCAGATACGTTGAGTGTGTAGGTGTACAGCCCCCA
TGTCACGCCCCCCGATCTTCCGTAGAAGTTGCCATCCCAATAGTCTCATCCTGTCAGCAGATACT
AAAGCGGAGAATGGGGACCTATATGCAGCATGTCTCTTGCCGGGAGACTCGCTATCCCCCGCAAC
CTGATCAGTCTTTCCTTTGGAGTAGTAAGGTATGCTGGTCGTTTCCAGAATCATCGATGAGATGC
GCGCGTTTCGAGGGCCTTTAGGCGTAAGCAGGACCGTTAGGTACT
Right flanking sequence: Indices 286023 -- 286522
AACGGGAGAGGGCCCGCCGCCAGGCCCTATTATTACTCGGATATATAAGGGTTCCGAAGCGCCCC
CCTTATTGGAATCTTCGTGAATCCCTGGCCAAAGGAGAGTAAGATCCTTGCCCCCCGATGAAGAG
GGAGTCGAATTGCTCGCCCGTCCATCCCCGATCTCCAGATAGGGATCGCGGAAAGAAGCTATAGT
TCGATCGATGGTCAGAGCATATATGAAAAGCTAGGATCCTGGCCCCGTTCCAGCAGAGATAGTTG
GTAGCGCTGGTTCCTCTTCGCCTTTCGTCAATAGGTCTGTTCATTGGCAAGTTACTTCTCGTTCC
TCATCATTATGATTTTGAGCATGTGAATAGTGAGAATACTTCGGTTCAAGCTGATGAGTCCTTGC
CTAAGCGTCGATCCGTCGTGAAATCCATCTATTTATATAAGAGAAAGGCGAGAGACAAGGATCTG
ATTCGCTGGGCTGGGCCATCGATCCTTCGTTCCAACGGCCAGCAG
Found at i:288496 original size:18 final size:18
Alignment explanation
Indices: 288470--288523 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
288460 AGTCACTTGA
*
288470 GAGTACCTAACGGTCCTC
1 GAGTTCCTAACGGTCCTC
*
288488 GAGTTCCTAACGGTCCTA
1 GAGTTCCTAACGGTCCTC
*
288506 GAGTTCCTAACGGACCTC
1 GAGTTCCTAACGGTCCTC
288524 CTTATGCCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (18 bp):
GAGTTCCTAACGGTCCTC
Left flanking sequence: Indices 287970 -- 288469
AAGCTCCAGATATCATTCACCAAGCGTGTCAGGATAGGGGGGGTCTCCCACCCCCCCAACTTTAA
GACCCGGTTTGAACTTCCAGCAATTTCTCGAAGAAACCAGTGTGGGATGGAGAACAAGCGGCAGT
CGTCAACCTTCGAAGAACCAACGATCGATAATCAAACCCAACAACACTACAATTCGGGCATTGAA
AAGCACTTCTCATTCTTCCAATATAGGGGTTCAGCCAAGTCGTCTCCTGTTCATGCCATGCCGCG
CGTGCCTGAATAGAGAAAGAGTATTATGGGAGGAGCTTTCAACTTCCACAAGTGGACCAACACAG
AATAAGTGAAGGATTGGCCTCCTGTCGGACCTTGTGTTTCCGGGTGGCGGGCGGCTAGACACTGA
ACCAATAAGACAGCGGGGGGCGTGATTACTGGGCGCTAACAGCCCTGGGCATACTTTATCTCATA
GGGTCAGAGCGAACTAAAGCTTCGCCTTGCTGGGAAGTCACTTGA
Right flanking sequence: Indices 288524 -- 289023
CTTATGCCTCACGCCTTACGCCTTTTCTTTGTCCATTTATTGAATAGGGCTTCGCCATTCATTGA
ATAGGCAAGCGAACGGGCGGGCACAGGGTTCAGTTATTTCCATCTGGGGCACGCACGCACGCACA
GGGACAGTCACTTCTTCGTGCCCATTCTCCAGCTCTTTGACCCACCCCTCTTTCTGGTCCTCATC
CCGATCGATTATGAAATTGATTATTCCATCAATTCATCAATGATTTGATGAAATCATTAATCAAA
GAATAATAACGAATCAAACGGATGGAAAACGCCATCGTTCGAGCGAACGGTGCAATGGCTCTTCC
GTTGAAGCAGACCCTGAAGAGGAAGCATGACCAGAGAATGGCTTAGCCAATGCCGGCCTTTAGTG
ATCTATACCATCTGAGCTGCTACGACCCCTATTGAATGAATGGATAAATAGGCCTAGCCCGCTCC
CTCGTTGCAACTGTATATCATCAGTAAAACACCCTGCTGCCTGTC
Found at i:318616 original size:12 final size:12
Alignment explanation
Indices: 318599--318635 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
318589 GATCTGTAGA
318599 TCTATCTATATC
1 TCTATCTATATC
*
318611 TGTATCTATATC
1 TCTATCTATATC
*
318623 TCTATCCATATC
1 TCTATCTATATC
318635 T
1 T
318636 AGATAGATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.03, T:0.49
Consensus pattern (12 bp):
TCTATCTATATC
Left flanking sequence: Indices 318099 -- 318598
AAAATCCCACATACGAGAAAAGGTCACAGATGTAGCTGAACCAAGTAACATTGCAAGGGCATAGT
GATAGTAGGGTCGGGATATCCCCGCCCTCCGGACCGGACGTGAAGGTCCCCCCTCATCCGGCTCT
CTGCAGGGGAATCTCCACTCACTGCTCCCCCTAATATCCCCCCTTTGCCACATCATGGGGAGGTT
TGCAGGAGATCCCGGAGGCTCGCTCGGAAAGGCTGCTAAAGGCTGCTATAGCAGTCCGTCCGGCT
GCTCCTGCTGGAATCATTGCTATTCATTCCTTCTCCCGTGCTCTGGCAATTACGCTCCCTAGACT
ATTGACCGTACATGTAGTTGCGGCGGCTAGGGACAATGACGATCCGAGATATGTAATAGCAATAA
TATAGAGATTCATAATGATGACGATACATACAAATACGAATAGGGATGGATAGATATATAGATAC
AGGTACACATATAGATGTATATAGATAGAGAGATAGATCTGTAGA
Right flanking sequence: Indices 318636 -- 319135
AGATAGATCTAGATATCTATCTATCTATCTATCTATAGAGATATCTATCTCGATATATAGATAGA
TTAGATATATCTCGAGATATCTATATATCTAGAGAGAGAGAGAGATCTCTCTATATCGATAGATA
TCGATATCGATATCTATCTCGAGATATACATATATCGATATCGATATCTATCTATCGATCGATAG
ATAGATATCGGTATCTAGATATATATCTGTAATAGAGATAGATCTAGATATATCTCTCTATTTCG
ATATATAGATACCTCTCTCTTTATACATATAGATCTATATAGATATGGATGTATCTATTTATACG
TATGTAGATAGACATGGATATCCATATATCTCTATATCTATGTATCCCGATATCTGTATATTCGA
TTTTATAATACGGTACAATACTATATAATGCAATGGGATGGATGGTAGAGGGCTGCCTGCGCCCA
AAAGCGATGATTCACTTGTCCCCTTGTCCATAGAGACCTCGTGGC
Found at i:318781 original size:28 final size:28
Alignment explanation
Indices: 318750--318813 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
318740 GAGAGATCTC
318750 TCTATATCGATAGATAT-C-GATATCGATA
1 TCTATATCG--AGATATACAGATATCGATA
* *
318778 TCTATCTCGAGATATACATATATCGATA
1 TCTATATCGAGATATACAGATATCGATA
*
318806 TCGATATC
1 TCTATATC
318814 TATCTATCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 6 0.20
27 1 0.03
28 23 0.77
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (28 bp):
TCTATATCGAGATATACAGATATCGATA
Left flanking sequence: Indices 318250 -- 318749
CTGCTCCCCCTAATATCCCCCCTTTGCCACATCATGGGGAGGTTTGCAGGAGATCCCGGAGGCTC
GCTCGGAAAGGCTGCTAAAGGCTGCTATAGCAGTCCGTCCGGCTGCTCCTGCTGGAATCATTGCT
ATTCATTCCTTCTCCCGTGCTCTGGCAATTACGCTCCCTAGACTATTGACCGTACATGTAGTTGC
GGCGGCTAGGGACAATGACGATCCGAGATATGTAATAGCAATAATATAGAGATTCATAATGATGA
CGATACATACAAATACGAATAGGGATGGATAGATATATAGATACAGGTACACATATAGATGTATA
TAGATAGAGAGATAGATCTGTAGATCTATCTATATCTGTATCTATATCTCTATCCATATCTAGAT
AGATCTAGATATCTATCTATCTATCTATCTATAGAGATATCTATCTCGATATATAGATAGATTAG
ATATATCTCGAGATATCTATATATCTAGAGAGAGAGAGAGATCTC
Right flanking sequence: Indices 318814 -- 319313
TATCTATCGATCGATAGATAGATATCGGTATCTAGATATATATCTGTAATAGAGATAGATCTAGA
TATATCTCTCTATTTCGATATATAGATACCTCTCTCTTTATACATATAGATCTATATAGATATGG
ATGTATCTATTTATACGTATGTAGATAGACATGGATATCCATATATCTCTATATCTATGTATCCC
GATATCTGTATATTCGATTTTATAATACGGTACAATACTATATAATGCAATGGGATGGATGGTAG
AGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGAGACCTCGTGGCATA
CTACCGCCGCGACTCCCGCTAGATAGCCGCCCCTTTATTGATATATATTCTCACAGCCTCGTGGA
CGAAAGAAGGGAACTTATCGTACCGGGGGATTCATTGACTTGCATTCCTGCTGGCACTACTAAAG
AGCTCCGGTCTTAACGCCCCCACTACTGCTGCCCTTCCTCGGGTT
Found at i:318821 original size:20 final size:20
Alignment explanation
Indices: 318764--318824 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 20
318754 TATCGATAGA
318764 TATCGATATCGATATCTATC
1 TATCGATATCGATATCTATC
* *
318784 --TCGAGAT--ATA-C-ATA
1 TATCGATATCGATATCTATC
318798 TATCGATATCGATATCTATC
1 TATCGATATCGATATCTATC
318818 TATCGAT
1 TATCGAT
318825 CGATAGATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
14 2 0.06
15 1 0.03
16 9 0.29
18 9 0.29
19 1 0.03
20 9 0.29
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (20 bp):
TATCGATATCGATATCTATC
Left flanking sequence: Indices 318264 -- 318763
ATCCCCCCTTTGCCACATCATGGGGAGGTTTGCAGGAGATCCCGGAGGCTCGCTCGGAAAGGCTG
CTAAAGGCTGCTATAGCAGTCCGTCCGGCTGCTCCTGCTGGAATCATTGCTATTCATTCCTTCTC
CCGTGCTCTGGCAATTACGCTCCCTAGACTATTGACCGTACATGTAGTTGCGGCGGCTAGGGACA
ATGACGATCCGAGATATGTAATAGCAATAATATAGAGATTCATAATGATGACGATACATACAAAT
ACGAATAGGGATGGATAGATATATAGATACAGGTACACATATAGATGTATATAGATAGAGAGATA
GATCTGTAGATCTATCTATATCTGTATCTATATCTCTATCCATATCTAGATAGATCTAGATATCT
ATCTATCTATCTATCTATAGAGATATCTATCTCGATATATAGATAGATTAGATATATCTCGAGAT
ATCTATATATCTAGAGAGAGAGAGAGATCTCTCTATATCGATAGA
Right flanking sequence: Indices 318825 -- 319324
CGATAGATAGATATCGGTATCTAGATATATATCTGTAATAGAGATAGATCTAGATATATCTCTCT
ATTTCGATATATAGATACCTCTCTCTTTATACATATAGATCTATATAGATATGGATGTATCTATT
TATACGTATGTAGATAGACATGGATATCCATATATCTCTATATCTATGTATCCCGATATCTGTAT
ATTCGATTTTATAATACGGTACAATACTATATAATGCAATGGGATGGATGGTAGAGGGCTGCCTG
CGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGAGACCTCGTGGCATACTACCGCCGCG
ACTCCCGCTAGATAGCCGCCCCTTTATTGATATATATTCTCACAGCCTCGTGGACGAAAGAAGGG
AACTTATCGTACCGGGGGATTCATTGACTTGCATTCCTGCTGGCACTACTAAAGAGCTCCGGTCT
TAACGCCCCCACTACTGCTGCCCTTCCTCGGGTTCGTAGAGTCGG
Found at i:325862 original size:25 final size:25
Alignment explanation
Indices: 325814--325863 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
325804 GGATCGCATA
* * *
325814 TGAGGATTACATCTATGGGGGAAAC
1 TGAGGATTACATATATGAGAGAAAC
325839 TGAGGATTACATATATGAGAGAAAC
1 TGAGGATTACATATATGAGAGAAAC
325864 CAGGATCTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (25 bp):
TGAGGATTACATATATGAGAGAAAC
Left flanking sequence: Indices 325314 -- 325813
CCCAGCCGCCCCCCTTAAATAAAGAAGGGAAGGCGTCTGCCGGGTCGTCCGTCCGCGGGGCCGCT
GGGGCTCCCTCATCCTCACTCATTATTCAAGAGAAAGGCTCTTTCCCGCCCGGTTGCCATTGCTA
AGGGCCCTCATCGATCATCTGGGGTTACCCCCCGTCCATGTTCTGCCCTCGGCAGCAAGGACCTT
GCCGTTATGCATGCAAGAGACCCACCCAGCTCATCGTTTATATCACCGATAGTGGGGTTCGTGTT
AGAATGATCCCGGCCGGGTCCGTTCCTCTCCCGTTGGTCGAGTGTCTAAAGACCCTCTCCCTCAT
ACTTCTACCCCAAACGTTTGTTCCAGTAAACCCTTACTCCATGATAGGGTTGCGCCTTCACTGCG
GTGGCATCATTAGCCCCCCTTCCTGAATGGACTGATGGGCCACTAATATCGGAAGCGGGCTAGGT
GGTTGCGCCTTCTTCAACTCCTGATGGGCCGGGAAGGATCGCATA
Right flanking sequence: Indices 325864 -- 326363
CAGGATCTCCCCCCCGTGTGAGCCCGGAGGTGTATTAGGAACTGGCTTGGCTCGGCCGTCAACTT
AGGGGCTGGATGCGCTTCTCATTCACCCGTGGCACCTTCTATCAATGCTGAAGGTGGTTGGAGGC
GGTTTACGCTGGCTCGGCCGGTATCAGAGATCTGCCTTTCCCTCGACTGGGTGAGTTGTTTGGGT
CCATTCCGCCTATATCCAAATAATAAAAAGGTTAGCTCAGTTCCGATCATTTAGATACGGGGAGA
GGCTATCAAAGATCCTCCCTGCCTCTGCCTCTACTGCTGGGTCAGAGTCAGTTGCTTATGGCTAC
GCTGGAGTAAGGGCACCCGTTGTTGGGACTGCTAGCCGGGCCGAAGGATGGTGCTGCCGATCGCA
GTGCCTCGAATAGATAGGGTTTTCCCCGTTGCCGCTGACGAAGGAGCGGAATGATGAGAGTGCCA
TTGGAAACATCGGAAATAGAAGGTCGCTGTGCCGGAGGTGGAGCC
Found at i:338724 original size:20 final size:21
Alignment explanation
Indices: 338699--338737 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
338689 AGAGCGACGC
*
338699 GCCCTATTGGAT-AATAAATA
1 GCCCTATCGGATAAATAAATA
338719 GCCCTATCGGATAAATAAA
1 GCCCTATCGGATAAATAAA
338738 GAAATAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (21 bp):
GCCCTATCGGATAAATAAATA
Left flanking sequence: Indices 338199 -- 338698
GAAGATCCGATAGCTGCTAATCAACCCAGCCGATTGCACTGGAAGAAAACCCCGCCAACGTATTT
TCAATAGGGAGAAGATCCCTTCCTTTATTCGGGGCAGAAGCAATAGGGTCCGGTCCTTCACCCCC
CTTGAAGGGATAGAAGGGGGCTCCCTTCGATGAATGGGAAGAGAATTCTCCGAATGCACGGGTCC
AGACACGGTTACTCGGATGGCGGGGCGAAGCCTCCTGAATGTCTATAACTCGATCGGGAATGGAA
AATCCGCGTAGCTCAGGTGACTCGCTGTTCGCTCGTACCTTATTGAATGAATGGATAAACCCGCC
ACTTCCACCGTCTAGGGAAAAGGAGCATCCCGTACGGGATCGATGCTTCAGCCTCAGCCCTTGAA
TAAATGAATAAATAGAGGTGCGGCGGGGTGATGCAAATGACCCCTCTCAAACCCGAGGTCGAGGA
TTGGCACACTCTACACCTTATTCATTTCCTTAGGGAGAGCGACGC
Right flanking sequence: Indices 338738 -- 339237
GAAATAATGAAGAAAGCGAGCGGAAGACTTCTACCCTATCGAATTGGTAAGGGAAGAAGCCGGCT
CTTATGATGCTCCAGGCGGCGAAATGCACCCGGCCCAACCCGCGGAGGTTTCGCCCCGAAACTTA
TAGTCATGATACGGCCGGCCTTCCCTATCTATAGCGGATTTTTCGATCTAGTATCTAGCATCCAG
GAGTCTTCTCCGGTTCTTGATAATTGACTGTTTCGCCCCAGCTGTCGAAAGCGGAGGCGATTGCT
TCTCCTTCCTCATCCCAATATGGGGTGAAATGCTGATGGATCCATCGAACGAAGTTCTATGAAGG
GAATAGAATCGGTCCGCTCCGATCCAAGTATGTAAGTAAGAAACCTTCGGTCTTTTACGAACAAC
CTAATGAGATTCTCTCGGATAGCTTCATGAGTGGTCCGACTTCGTGTTGGATCTAGCAAATCTTT
AGTAATTGAGGAAAGGGTGGCATTCTCCTGATCAGTGCGATAATT
Found at i:346242 original size:35 final size:36
Alignment explanation
Indices: 346203--346287 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 36
346193 CCATAGCCCT
346203 ACTATTCATA-TCACCTTAAACCTGAAACCTCACCC
1 ACTATTCATACTCACCTTAAACCTGAAACCTCACCC
*
346238 ACTATTCATATCACCTCACCTTAGACCTGAAACCTCACCC
1 ACTATTC--AT-A-CTCACCTTAAACCTGAAACCTCACCC
*
346278 ACTCTTCATA
1 ACTATTCATA
346288 AGCTGCAGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
35 7 0.16
37 3 0.07
38 3 0.07
40 30 0.70
ACGTcount: A:0.32, C:0.38, G:0.04, T:0.27
Consensus pattern (36 bp):
ACTATTCATACTCACCTTAAACCTGAAACCTCACCC
Left flanking sequence: Indices 345703 -- 346202
GCGTTGAGCATCAAAAGAAGATGCATGATGGAGAATTGGAACTACTGGACCTGTCGATGATGCCG
ATCATAGGAGGGTTTCAAGTGGTCGCTCGTAACACTTATAATAAGTATGCCGAAGGGGCTTTAGA
ACGAAATGGCTTTTTGATCCGGCTACCGGCGAGATGAAAAAGGTTCTGTGACAGAGGAAGTAAGA
GCTCTCCCTCCTCGACCAGAGGATTATCCCGATTGGTACATGCTAACTCATCTCCGACCAGAGGA
TTGAATGGGCTAAATAATTGTCTCCGACCAGAGGATTGCATTGGTATAAACTAGAAGACTAACAA
CTGGGGGACTAATTAATAGGGTAAGAGTTCCTCTCCCATCCATTTATATTCATTATAGAAGCTTA
TATTATAGAAGCAAAGGTATTAAAGAATCAATTCCCGTACGAGTGGAAAGTGAAATGCCGTTACC
ACCTCATCCTACTATTAAATCCTACCATTTATAAGCCATAGCCCT
Right flanking sequence: Indices 346288 -- 346544
AGCTGCAGCTTAGGTGCTTCTGGGCCGGGAAGCACCAATCTCACCCGTTGGGTTCTCCCTTTTTG
ATCGAGGTAAAACCGAGAGAAAGGGGAAGGCTCCCTCTCGCTATCGGTCATTGAGTGGCTGTGAA
CGGACCGATTCCCCTTTCTCTCACGTTAGTGAGAGTAAGTGAAACTCGGGTAGCTCGCTCCATTC
CCGGTCAGGGTTGAACCAACAGCATCCCCTGAAGAAATAGGAAGGGGCGAACCCACCCTTCG
Done.