123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_027976
Parameters: 2 7 7 80 10 50 500
Length:  346544

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625--674	24	2.1	24	96	0	91	20	26	28	26	1.99
3468--3528	29	2.1	29	96	0	113	29	22	31	16	1.96
4473--4522	18	2.8	18	90	0	82	26	26	10	38	1.87
12988--13036	18	2.7	18	90	0	71	24	26	24	24	2.00
23614--23723	55	2.0	55	92	0	184	28	26	22	22	1.99
24292--24327	18	2.0	18	94	0	63	30	25	5	38	1.78
33800--33874	23	3.0	24	79	13	73	38	10	10	40	1.75
35727--35786	26	2.3	26	82	0	75	35	15	10	40	1.80
49350--49443	30	3.2	30	62	17	79	22	36	17	24	1.95
49338--49453	58	2.0	58	100	0	232	22	32	18	25	1.97
49346--49435	28	3.1	28	61	17	67	24	35	16	23	1.95
55222--55271	18	2.8	18	90	0	82	24	24	28	24	2.00
56199--56277	37	2.1	37	92	0	131	24	13	30	31	1.94
56289--56484	30	7.2	30	88	11	252	25	21	29	24	1.99
56351--56411	20	3.0	20	100	0	122	19	29	21	29	1.98
56291--56471	100	1.8	100	100	0	362	24	23	27	25	2.00
61658--61716	31	1.9	31	92	0	100	16	30	25	27	1.97
62622--62715	47	2.0	47	95	0	170	12	36	25	25	1.92
65487--65527	20	2.0	20	90	0	64	48	0	19	31	1.49
65496--65526	6	5.2	6	96	0	53	51	0	19	29	1.47
65493--65571	36	2.2	36	81	2	88	45	5	17	31	1.70
67642--67690	18	2.7	18	90	0	71	24	26	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70316--70423	56	1.9	56	98	0	207	25	33	9	32	1.87
82277--82319	20	2.2	20	86	0	59	37	41	16	4	1.69
91343--91420	39	2.0	39	97	0	147	30	21	30	16	1.96
104277--104329	27	1.9	28	84	3	72	50	11	18	18	1.76
108317--108364	24	2.0	24	95	0	87	22	29	18	29	1.98
110702--110747	24	1.9	24	100	0	92	19	23	30	26	1.98
112532--112584	26	2.1	26	82	6	65	35	20	9	33	1.85
112706--112763	22	2.9	21	73	21	61	32	13	24	29	1.94
113891--113924	12	2.8	12	100	0	68	41	8	8	41	1.67
113906--113958	18	3.1	18	75	10	56	41	13	7	37	1.72
113859--113978	48	2.4	49	81	10	147	40	11	10	36	1.77
117593--117627	12	2.9	12	100	0	70	8	22	42	25	1.82
125512--125556	16	2.9	15	81	12	56	28	15	4	51	1.63
127223--127283	30	2.0	30	87	3	86	16	18	31	34	1.93
131380--131425	21	2.2	21	88	7	67	30	28	26	15	1.96
136421--136471	27	2.0	26	92	7	86	31	9	43	15	1.80
138079--138166	43	2.2	39	88	10	124	26	25	21	27	1.99
139485--139523	20	2.0	20	89	0	60	23	38	12	25	1.90
143132--143180	18	2.7	18	90	0	80	20	34	20	24	1.96
152192--152254	30	2.1	29	91	8	101	22	31	20	25	1.98
152234--152274	20	2.0	20	95	0	73	29	21	31	17	1.96
177526--177722	75	2.7	72	85	5	236	19	31	20	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177490--177744	72	3.5	69	81	7	258	19	33	19	27	1.96
184423--184463	20	2.0	20	90	0	64	48	0	19	31	1.49
184432--184462	6	5.2	6	96	0	53	51	0	19	29	1.47
184429--184507	36	2.2	36	81	2	88	45	5	17	31	1.70
198140--198174	12	2.9	12	100	0	70	25	42	22	8	1.82
207462--207498	18	2.1	18	89	0	56	24	16	21	37	1.93
208764--208798	12	2.9	12	100	0	70	25	42	22	8	1.82
221630--221679	24	2.1	24	96	0	91	20	26	28	26	1.99
224473--224533	29	2.1	29	96	0	113	29	22	31	16	1.96
225478--225527	18	2.8	18	90	0	82	26	26	10	38	1.87
236547--236589	22	2.0	22	90	0	68	27	13	37	20	1.91
238903--238957	18	3.1	18	89	0	83	23	21	32	21	1.98
256441--256488	21	2.2	22	88	3	71	37	20	14	27	1.92
261508--261541	17	2.0	17	94	0	59	17	50	0	32	1.47
283043--283150	56	1.9	56	88	3	164	27	13	20	37	1.91
285988--286022	12	2.9	12	100	0	70	25	42	22	8	1.82
288470--288523	18	3.0	18	88	0	81	22	31	22	24	1.98
318599--318635	12	3.1	12	88	0	56	24	24	2	48	1.64
318750--318813	28	2.3	28	78	10	69	34	17	12	35	1.87
318764--318824	16	3.3	20	65	25	62	32	18	11	37	1.86
325814--325863	25	2.0	25	88	0	73	38	10	28	24	1.87
338699--338737	20	1.9	21	89	5	62	41	17	15	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346203--346287	40	2.3	36	81	15	109	31	37	3	27	1.74

Tables:   1

The End!