Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_027000
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 737091
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
File 3 of 4
Found at i:515327 original size:13 final size:13
Alignment explanation
Indices: 515309--515344 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
515299 TCTGACTCCC
515309 AAGGAACAAAGGA
1 AAGGAACAAAGGA
515322 AAGGAACAAAGGA
1 AAGGAACAAAGGA
515335 AAGGAACAAA
1 AAGGAACAAA
515345 CCCATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (13 bp):
AAGGAACAAAGGA
Left flanking sequence: Indices 514809 -- 515308
TAGTAACTATGCTATTACCTATACGCCGCTATTAACTCCCTAAGAGACACTTTAGCCGGGAACCA
AACCAACGAAACTCTGTAGGGAACAAAGAGCTATACCTCATCTCATATTACAAAAGTATATACCT
AAACCCAACGAAAGAAACTACCTCTCTAGACTATACTAGATATTCGATATTACCAGATATTACCG
GACGAAGAGAAACCTTTAGGCAAACCTTAGCTAACCCTATGCGCTTTCGTTACTAATAGATACTA
GCTGGACAAGGAAAAGTTAAGGAAAAACCTAGTCTTATCTTAGCTTTCGTAACTATAACGGAAAC
GAACCTCTAACTAGCAGTACTACTTAAAACCATGTAATTACCGGCAAGCCTTGGAGTTGGATAGT
CAAAAACTGTAGCTTAACCATTTCCGTTGTATACTTACTAGTGCTTAGAAAGAAACGACAACGAA
ACCAACTACTGCCGCTAAAGAACTCAAACCTCTTATCTGACTCCC
Right flanking sequence: Indices 515345 -- 515844
CCCATATTAACCCATACAACAGTATTAGCTACAACTTCCTTTCTTGACTAACTGGATTGACTGAC
TGTCTTTCCTTGGTTTACGCCGCTACAGTAGAAAGAATTCTCTATTCTATTCTATATATAGAAAC
ATTAACTAGAAAGATTAACTAGAAAGATTAACTAGAAACATTAACTAGAAAGATTAACTAGAAAG
ATTAGCTGCAGGTTATATCCCATTACCACCTGAACAACAACTAGATTGACTTGCTTTGTTTCACA
ACTTCCTGTATTGAACAACCTTATTCCTTGAACAACCTCCTGTAACCCTAGTAGAGCTAGCTACT
GCTTTCCTTACTACAACGAAACTCACCACTACCTAAAGGATATACACCTTAGGCGTGCTTATGAA
CTAAACTAGTAGGAACAACTACCTAAGTATATGAACTAGTACTTATGAACTAGTAGCAACTATCT
AAGGAACTAGCTGACAAACAAAGGAACTACCTAGCTGACAAACAA
Found at i:515486 original size:13 final size:13
Alignment explanation
Indices: 515468--515543 Score: 134
Period size: 13 Copynumber: 5.8 Consensus size: 13
515458 ATTCTATATA
*
515468 TAGAAACATTAAC
1 TAGAAAGATTAAC
515481 TAGAAAGATTAAC
1 TAGAAAGATTAAC
515494 TAGAAAGATTAAC
1 TAGAAAGATTAAC
*
515507 TAGAAACATTAAC
1 TAGAAAGATTAAC
515520 TAGAAAGATTAAC
1 TAGAAAGATTAAC
515533 TAGAAAGATTA
1 TAGAAAGATTA
515544 GCTGCAGGTT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 60 1.00
ACGTcount: A:0.54, C:0.09, G:0.13, T:0.24
Consensus pattern (13 bp):
TAGAAAGATTAAC
Left flanking sequence: Indices 514968 -- 515467
ACTATACTAGATATTCGATATTACCAGATATTACCGGACGAAGAGAAACCTTTAGGCAAACCTTA
GCTAACCCTATGCGCTTTCGTTACTAATAGATACTAGCTGGACAAGGAAAAGTTAAGGAAAAACC
TAGTCTTATCTTAGCTTTCGTAACTATAACGGAAACGAACCTCTAACTAGCAGTACTACTTAAAA
CCATGTAATTACCGGCAAGCCTTGGAGTTGGATAGTCAAAAACTGTAGCTTAACCATTTCCGTTG
TATACTTACTAGTGCTTAGAAAGAAACGACAACGAAACCAACTACTGCCGCTAAAGAACTCAAAC
CTCTTATCTGACTCCCAAGGAACAAAGGAAAGGAACAAAGGAAAGGAACAAACCCATATTAACCC
ATACAACAGTATTAGCTACAACTTCCTTTCTTGACTAACTGGATTGACTGACTGTCTTTCCTTGG
TTTACGCCGCTACAGTAGAAAGAATTCTCTATTCTATTCTATATA
Right flanking sequence: Indices 515544 -- 516043
GCTGCAGGTTATATCCCATTACCACCTGAACAACAACTAGATTGACTTGCTTTGTTTCACAACTT
CCTGTATTGAACAACCTTATTCCTTGAACAACCTCCTGTAACCCTAGTAGAGCTAGCTACTGCTT
TCCTTACTACAACGAAACTCACCACTACCTAAAGGATATACACCTTAGGCGTGCTTATGAACTAA
ACTAGTAGGAACAACTACCTAAGTATATGAACTAGTACTTATGAACTAGTAGCAACTATCTAAGG
AACTAGCTGACAAACAAAGGAACTACCTAGCTGACAAACAAACTCAGTGCTTCCCAAGGAAAAGT
GCCACTCTAGTACTATCTTTCCGTTGTTTACTATACTAGCTAGAACCCATCTACTACCATATATC
TAGTACGTTGCTCTTACGAAGAATTGGATTGACTTGCAACACTGAGCTTTAGCTTCGTTGACTAT
CTGACATACCGAGTTAGCTGCCATTACAACTAGCTGACATTGGAA
Found at i:515514 original size:39 final size:39
Alignment explanation
Indices: 515468--515543 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
515458 ATTCTATATA
515468 TAGAAACATTAACTAGAAAGATTAACTAGAAAGATTAAC
1 TAGAAACATTAACTAGAAAGATTAACTAGAAAGATTAAC
515507 TAGAAACATTAACTAGAAAGATTAACTAGAAAGATTA
1 TAGAAACATTAACTAGAAAGATTAACTAGAAAGATTA
515544 GCTGCAGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.54, C:0.09, G:0.13, T:0.24
Consensus pattern (39 bp):
TAGAAACATTAACTAGAAAGATTAACTAGAAAGATTAAC
Left flanking sequence: Indices 514968 -- 515467
ACTATACTAGATATTCGATATTACCAGATATTACCGGACGAAGAGAAACCTTTAGGCAAACCTTA
GCTAACCCTATGCGCTTTCGTTACTAATAGATACTAGCTGGACAAGGAAAAGTTAAGGAAAAACC
TAGTCTTATCTTAGCTTTCGTAACTATAACGGAAACGAACCTCTAACTAGCAGTACTACTTAAAA
CCATGTAATTACCGGCAAGCCTTGGAGTTGGATAGTCAAAAACTGTAGCTTAACCATTTCCGTTG
TATACTTACTAGTGCTTAGAAAGAAACGACAACGAAACCAACTACTGCCGCTAAAGAACTCAAAC
CTCTTATCTGACTCCCAAGGAACAAAGGAAAGGAACAAAGGAAAGGAACAAACCCATATTAACCC
ATACAACAGTATTAGCTACAACTTCCTTTCTTGACTAACTGGATTGACTGACTGTCTTTCCTTGG
TTTACGCCGCTACAGTAGAAAGAATTCTCTATTCTATTCTATATA
Right flanking sequence: Indices 515544 -- 516043
GCTGCAGGTTATATCCCATTACCACCTGAACAACAACTAGATTGACTTGCTTTGTTTCACAACTT
CCTGTATTGAACAACCTTATTCCTTGAACAACCTCCTGTAACCCTAGTAGAGCTAGCTACTGCTT
TCCTTACTACAACGAAACTCACCACTACCTAAAGGATATACACCTTAGGCGTGCTTATGAACTAA
ACTAGTAGGAACAACTACCTAAGTATATGAACTAGTACTTATGAACTAGTAGCAACTATCTAAGG
AACTAGCTGACAAACAAAGGAACTACCTAGCTGACAAACAAACTCAGTGCTTCCCAAGGAAAAGT
GCCACTCTAGTACTATCTTTCCGTTGTTTACTATACTAGCTAGAACCCATCTACTACCATATATC
TAGTACGTTGCTCTTACGAAGAATTGGATTGACTTGCAACACTGAGCTTTAGCTTCGTTGACTAT
CTGACATACCGAGTTAGCTGCCATTACAACTAGCTGACATTGGAA
Found at i:516154 original size:11 final size:10
Alignment explanation
Indices: 516129--516157 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
516119 TCCGCAACAG
516129 GAAAAACAAA
1 GAAAAACAAA
516139 GAAAAACAAA
1 GAAAAACAAA
516149 GAAAAACAA
1 GAAAAACAA
516158 CCTAGGGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.79, C:0.10, G:0.10, T:0.00
Consensus pattern (10 bp):
GAAAAACAAA
Left flanking sequence: Indices 515629 -- 516128
TCCTTGAACAACCTCCTGTAACCCTAGTAGAGCTAGCTACTGCTTTCCTTACTACAACGAAACTC
ACCACTACCTAAAGGATATACACCTTAGGCGTGCTTATGAACTAAACTAGTAGGAACAACTACCT
AAGTATATGAACTAGTACTTATGAACTAGTAGCAACTATCTAAGGAACTAGCTGACAAACAAAGG
AACTACCTAGCTGACAAACAAACTCAGTGCTTCCCAAGGAAAAGTGCCACTCTAGTACTATCTTT
CCGTTGTTTACTATACTAGCTAGAACCCATCTACTACCATATATCTAGTACGTTGCTCTTACGAA
GAATTGGATTGACTTGCAACACTGAGCTTTAGCTTCGTTGACTATCTGACATACCGAGTTAGCTG
CCATTACAACTAGCTGACATTGGAACGAAAGGAAAGGTTACATCCGCAACTAATACTAATACTAT
CAGGGTACATCCCCTACGAATACTATGAAGTGACATCCGCAACAG
Right flanking sequence: Indices 516158 -- 516657
CCTAGGGAATACTTTCCTAACTAGCTACATTTCCTTTCTACCCATTGGAGTTGTATTGTAACTAA
CTAGTGCTTATTCAAACTAGTAGAAACTTCCTATTTATTACCTAGAACTAGAACTATCACAAATC
ACTTACTAGAACTATCACTAGAACAAATAACTTACTCTAACTAGCTATCTGAGTACTAATAGAAC
GGCGCTTACTACTGAGAAACCTCATAACTAGCTGACAGTTAGTTACCTGTAATACTCGAAGGAGA
CATTTCCTTACGGCACTTTATTAGCTACAGTTCTCTCAAACTTTAGGGGGATTAGCTACAGGTAT
GAGAAATCGCCTAAGCCTAGCTGACAACAAAATCACTAGCTGACCTATAACGTTATTCATTACCC
ATCTATCTATACTAGTTGACTGAAAAGAACTACCTAGTTACCCCAGAAGTAAAGTATAGAGCAAC
TACCATCTGACCACTAACGGAAGCCTGTTACCTATTACCGCAAGA
Found at i:516307 original size:29 final size:29
Alignment explanation
Indices: 516264--516323 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
516254 TATTTATTAC
** *
516264 CTAGAACTAGAACTATCACAAATCACTTA
1 CTAGAACTAGAACTAGAACAAATAACTTA
**
516293 CTAGAACTATCACTAGAACAAATAACTTA
1 CTAGAACTAGAACTAGAACAAATAACTTA
516322 CT
1 CT
516324 CTAACTAGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (29 bp):
CTAGAACTAGAACTAGAACAAATAACTTA
Left flanking sequence: Indices 515764 -- 516263
TATGAACTAGTACTTATGAACTAGTAGCAACTATCTAAGGAACTAGCTGACAAACAAAGGAACTA
CCTAGCTGACAAACAAACTCAGTGCTTCCCAAGGAAAAGTGCCACTCTAGTACTATCTTTCCGTT
GTTTACTATACTAGCTAGAACCCATCTACTACCATATATCTAGTACGTTGCTCTTACGAAGAATT
GGATTGACTTGCAACACTGAGCTTTAGCTTCGTTGACTATCTGACATACCGAGTTAGCTGCCATT
ACAACTAGCTGACATTGGAACGAAAGGAAAGGTTACATCCGCAACTAATACTAATACTATCAGGG
TACATCCCCTACGAATACTATGAAGTGACATCCGCAACAGGAAAAACAAAGAAAAACAAAGAAAA
ACAACCTAGGGAATACTTTCCTAACTAGCTACATTTCCTTTCTACCCATTGGAGTTGTATTGTAA
CTAACTAGTGCTTATTCAAACTAGTAGAAACTTCCTATTTATTAC
Right flanking sequence: Indices 516324 -- 516823
CTAACTAGCTATCTGAGTACTAATAGAACGGCGCTTACTACTGAGAAACCTCATAACTAGCTGAC
AGTTAGTTACCTGTAATACTCGAAGGAGACATTTCCTTACGGCACTTTATTAGCTACAGTTCTCT
CAAACTTTAGGGGGATTAGCTACAGGTATGAGAAATCGCCTAAGCCTAGCTGACAACAAAATCAC
TAGCTGACCTATAACGTTATTCATTACCCATCTATCTATACTAGTTGACTGAAAAGAACTACCTA
GTTACCCCAGAAGTAAAGTATAGAGCAACTACCATCTGACCACTAACGGAAGCCTGTTACCTATT
ACCGCAAGAAAAAGAATGAAACTACTAGCTGTACTAAGAGAAACCCCAGCCAAAGAGAAACCAAC
GCAAAACGAATAGCTCCCCTGTATAACTAAGTAGGGAACAAAGAGCTAAACCTCATCTCATATTA
CCGTTGTGAATGACTACCCTTATCCCTTAAAAACGAACTACCTAA
Found at i:517295 original size:31 final size:31
Alignment explanation
Indices: 517260--517358 Score: 198
Period size: 31 Copynumber: 3.2 Consensus size: 31
517250 TCCCACCTCG
517260 GGAACTACAAGTAGCTTTGTTGATAGACGAA
1 GGAACTACAAGTAGCTTTGTTGATAGACGAA
517291 GGAACTACAAGTAGCTTTGTTGATAGACGAA
1 GGAACTACAAGTAGCTTTGTTGATAGACGAA
517322 GGAACTACAAGTAGCTTTGTTGATAGACGAA
1 GGAACTACAAGTAGCTTTGTTGATAGACGAA
517353 GGAACT
1 GGAACT
517359 CAGGAACTAA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.25
Consensus pattern (31 bp):
GGAACTACAAGTAGCTTTGTTGATAGACGAA
Left flanking sequence: Indices 516760 -- 517259
TAAACCTCATCTCATATTACCGTTGTGAATGACTACCCTTATCCCTTAAAAACGAACTACCTAAG
AGAAATAGATCCTCTCTCTAATCAGGAACAAAGGAAAGGACCAAAACAAACCAATATGGACTATA
TGCTATATCAATCTATTAGCTAGAGCTATTACCTCTATAAACTATACTAGATATGGACTACCGAA
GACAAACTTGCCGGCAAACCCTAGCTAACCCTATGCGATTTCTTTCCTTAACAACTAGCTAGAAA
AGTATGATCTCTACGGCACTAAGTATTACCTAAGTATAGTAAAGTAACTACCTAGTGCAACGAAA
CTCACTACCGGAAAGAACTCATCCCGTATCTAATCAGGAACTACAAGTCGCTTTGTTGATAGACG
AAGGAACGAAAGAACATAACATGGTCATATTATCTACGCTATTCTATTGAAAGATATATCCTTTA
GCCACTCCCAGTTCCCTGGTAAGTATACCTCTAACTCCCACCTCG
Right flanking sequence: Indices 517359 -- 517858
CAGGAACTAAACTAACGTATATGGACTACCTATCCGTTATAGTTTACTTCAAACTACTACCTATT
TCTTACCTATACTAGCTTACTACTGAGAAACTCACCATGGAATTACTGGCAGCCTTGGAGTTGGA
TAGTCAAAAACTGTAGCTTTCTATTCCCTCTTCTTTTCATTCGAGCAATAAATTGACTCTTCCCT
TCTAAGGAGTAATCAAAACCTCTCCTGGCAAGTCAACACTTTGTTCCTCTCCTGGCACAGTCTCG
TTAGAAACTCCCCTCGTTCCTCGTACCGGCAGGCCCTCTCCTTATCAGTCGAGTGACTTCGTCCC
TTGGATTCATAGTCTTTGCTTCGCGTCTCTACTGATTGTCAAGCACTTTTGTATATCCTCCTAAT
GGTATTTTGTACTCGACCAAAGGGAAGAGGTCAACACTTCCTAACTTGAGGCCTAACTTGAGGAA
AGTACTTTAGTTTCCTATCTCTACTCCTAAAACCTAAGCAAATAG
Found at i:531019 original size:27 final size:29
Alignment explanation
Indices: 530971--531024 Score: 85
Period size: 27 Copynumber: 1.9 Consensus size: 29
530961 CTCCTTTTCA
*
530971 GTCGAGTATATAAATTACCTCTCACAAAG
1 GTCGAGTACATAAATTACCTCTCACAAAG
531000 GTCGAGT-CATAAA-TACCTCTCACAA
1 GTCGAGTACATAAATTACCTCTCACAA
531025 GTACTTTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 12 0.50
28 5 0.21
29 7 0.29
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (29 bp):
GTCGAGTACATAAATTACCTCTCACAAAG
Left flanking sequence: Indices 530471 -- 530970
TAGACACGGTATCTATCGCTTAACGGACTAGTACTTTTATTAATGGGAGAACAAAACACTCCTTA
GAAAGCGGATTCTTTATAGACCTGCTGATATCCCTTTTGAAAGAAAGAATCCATTTTACCTACAA
CAGCAACTCAACTCTTCAGATCAGGCATCGCTTATCTTATCTATTTTCCACGCCCTGAGCTAACT
CATTTACCTTTAGCCTGCTTCACTTCAAAAGAGTTTCCGGCTTGACTTTAAAGAAGAAGACAGAT
TTTTGCCAAAAAGCCAATTCTCAAGGAAGAGTACGTGTCACGAACCCAACCCCCTATATCATACC
CTTATATGGATAATTACTTTCTTCTCCACCCTATAGTCTGATTCTACTACTAGGGAAGGACCGAA
GGGAAGGATTTCATTTTATCCCAACCTCTTCCTTTCAATCAATTACCTCTTCCTTTCAGTCTCGT
TAGAAACCCCCCTCGTTCCTCGTACCTTTCGACCTCTCCTTTTCA
Right flanking sequence: Indices 531025 -- 531524
GTACTTTGGTACCTCTCCTTTTCAGTCGAGTCCTTCGTGACAATAGGGTATATAAATAACCTCTC
CTTAACAGTCGAGTCTATAAATTACCTCTCACAAACAACTCGTTCGTTATACCTCTCCTGGGAAG
TCGAGCACTTCCTACCTCTTCTGATTCACTTCCTCCAGGTTTGGTTTAGAAAGACCCAGGGAGAG
TTCTTCTTAAATGGAATGAATTCATTTCTCGATGGGAACCTCTTAATAGAGTGGAAAACCAAGCC
AAGATTCATCGCCCGAAAGCACAGCACACTTTCTAGGAGTGGAGGAATCGGGTTGAAGTCAAAGC
ATGATCTACAATTGGACTTGTCCACATCGGTTCTATGTGAATTGAAGCCAATTCTTTCTTACCAC
AGGAGAAAGTACTTTACTTTTGAAGTCAATTTCGTCTCATTGGGCTCTCTATTTAGGATAAGCAT
TCGATTAATTGATAGCATTCCATTACCTCCCATTTTCCTAGTAGA
Found at i:543598 original size:14 final size:14
Alignment explanation
Indices: 543579--543606 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
543569 TTCTATCTAA
543579 GTTATTATTTCATT
1 GTTATTATTTCATT
543593 GTTATTATTTCATT
1 GTTATTATTTCATT
543607 CCTGAGTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.64
Consensus pattern (14 bp):
GTTATTATTTCATT
Left flanking sequence: Indices 543079 -- 543578
CTTAAAGGAAAAAGTGGCTGAAGCCAGTCTAAAGGAAAGGAAAAAGACTGATCTTTGATTATATA
CCTCGCTTTCCTGACTATTACTAAGAATAGAGTCTAGTCTAAGGTAAGTTTGGGTATAGCAGGGC
TTGAACCTGCGACCATTAGGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCCAAAAGA
TACGTCTTTCTTAGTAAGCTTCCTTCCAGCCGCCAATTGGTCTTCGCCTTCAAGCCAACAAGAGG
AAGAAGGCGAAGGGAAGGAGTTGTCTATCTATGTAATTACGGTCTCGCTTCGCCCCTTACAGGAG
ATCGGTTCTCACACCTAACGTACCAGTGTCTAGCAACCCTAAGCTCGTTCCTAAGTCCTTACGCA
TCATTCATTCCTTATCAGTCATGCCCTACGCACCCTTGTCTAGCAACTCAGTGATTCGCATACCA
GAGTCTAAGAACGTCGTTCTTTCATACCATAGTGATTCTATCTAA
Right flanking sequence: Indices 543607 -- 544106
CCTGAGTCTGAAGCCTGCACAAGGTATCCTATCTCTTCTCCTACAGGGCTATAGGGAAAGAAGTC
TTTTTCGAATCTAATGGATGGAAGCACCCACACCCAAACAAACCTATGACTAGCAGATAGTTGAG
TCAAACTCTCCCCTCCTCTTTCTTAGCTCTATAAAGTAAAAAACAACTGCCTACTCGAGTGCTCG
AAAGAACCCGTTGAAGAATACGAACCACGTTGTGCTGTAGCAACCAGGGTACTTCTATATTAGGA
TCTATGCCTACCAGCAAAGCAACAGGTACTTGCAAAGGCTTTCTACCTTTTCAAATCTTTCATTG
AACCTTGATCACCAGGCGTGAGGTATCGAACGGAGGAACCGAAGCTTCAACCACATACATAGGCA
GCAGTTCCTGCTCGCCTTTATTCATTCAAAGAGTACGCCACATCGGAATCCAAAGAACAAAGGGA
GTCTGCATTTCGAATATGAACTTGTCGAACCAGAAGCTAAAAGAA
Found at i:548528 original size:24 final size:24
Alignment explanation
Indices: 548484--548529 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
548474 GAAAACATCT
* *
548484 TCGTACTCTTGTTGCGGTTCATTC
1 TCGTACTCTTGTTCCGATTCATTC
*
548508 TCGTACTCTTTTTCCGATTCAT
1 TCGTACTCTTGTTCCGATTCAT
548530 CAAAGCCCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (24 bp):
TCGTACTCTTGTTCCGATTCATTC
Left flanking sequence: Indices 547984 -- 548483
GATTGGGCGTAAAGCGTCTTCAGGTGGCTTTTGAAGTCCCCCGTCAATTCCTTTGAGTTTCATTC
TTGCGAACGTACTCCCCAGGATCCCTTTTTTTTTATATAAATCATATAAATCCAAATCCCAGTAC
TCGTCCGAATCTTTTGCCTTCTTCAACTTCAACTCCTCTGAATCCCATTTTTGAACAACTTCTTC
TTCGTATGAATCCCATTCTTTTTGTAGCTTTTTATCTCTAACTTTCCATCTTCTGTCGGCATAAA
GAGCCTCCTCTGAATCCCATTGAATGGGATCGATGGAGTTCAGCTTTTGGTCCATAGGATCAAAA
GTCGTTGGATCGGATCGACCAAAATCCCGATTCTGTCTGAACTATTCATTTTCAGATGGGACCCA
AAGTTTACGCAAACATACATTTCTTTTAGTCAATTTTCTTTGAAATGTGCCGTTTCGCACTTCTC
GCAACCATCCCACAGAACAGATGTAAGTACGGTGCGAAAACATCT
Right flanking sequence: Indices 548530 -- 549029
CAAAGCCCCCTTTTTTATCCGATTCGGATTCATTAAAGCCTTCGTTTTTATCCGATTCGGATTCA
TTAAAGGTTTCATCGTCATCGGATTTTTGAATAACAAAAACGATTTCGAATTCAACCGATGACGA
TTCATTAAAGGCTCCGTTTCCATCCGATTCTTTAGAACGGCACACTTCTAGTGAAATTAGTTAAC
TCATTACTATTCGTGCCGGCTGAATCAAAACCCAAACTACGGACAATACAGAAACCCCTCTCATT
CGCATTCTTATTAAGATCATTAAGAGAAGGGCAGCTAGAATCTTTAATGAAGGAAAGGGTCACTA
CAAGGACAGAGTATCTATGTTGTTGTAAACAAGTATTTCTGGTCATATACTACCTCAATCACTAT
AATATTTTATATTAATATTATAATACAAAATAGAACGTCCCTAGAGAGCATCGTTATTCTGAGAT
CCATTTAATAGACTGAATGGGAAATGTTGTCAAAGGGAAGGACCC
Found at i:548568 original size:33 final size:33
Alignment explanation
Indices: 548523--548600 Score: 120
Period size: 33 Copynumber: 2.4 Consensus size: 33
548513 CTCTTTTTCC
* *
548523 GATTCATCAAAGCCCCCTTTTTTATCCGATTCG
1 GATTCATTAAAGCCCCCGTTTTTATCCGATTCG
**
548556 GATTCATTAAAGCCTTCGTTTTTATCCGATTCG
1 GATTCATTAAAGCCCCCGTTTTTATCCGATTCG
548589 GATTCATTAAAG
1 GATTCATTAAAG
548601 GTTTCATCGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.38
Consensus pattern (33 bp):
GATTCATTAAAGCCCCCGTTTTTATCCGATTCG
Left flanking sequence: Indices 548023 -- 548522
CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGATCCCTTTTTTTTTATATA
AATCATATAAATCCAAATCCCAGTACTCGTCCGAATCTTTTGCCTTCTTCAACTTCAACTCCTCT
GAATCCCATTTTTGAACAACTTCTTCTTCGTATGAATCCCATTCTTTTTGTAGCTTTTTATCTCT
AACTTTCCATCTTCTGTCGGCATAAAGAGCCTCCTCTGAATCCCATTGAATGGGATCGATGGAGT
TCAGCTTTTGGTCCATAGGATCAAAAGTCGTTGGATCGGATCGACCAAAATCCCGATTCTGTCTG
AACTATTCATTTTCAGATGGGACCCAAAGTTTACGCAAACATACATTTCTTTTAGTCAATTTTCT
TTGAAATGTGCCGTTTCGCACTTCTCGCAACCATCCCACAGAACAGATGTAAGTACGGTGCGAAA
ACATCTTCGTACTCTTGTTGCGGTTCATTCTCGTACTCTTTTTCC
Right flanking sequence: Indices 548601 -- 549100
GTTTCATCGTCATCGGATTTTTGAATAACAAAAACGATTTCGAATTCAACCGATGACGATTCATT
AAAGGCTCCGTTTCCATCCGATTCTTTAGAACGGCACACTTCTAGTGAAATTAGTTAACTCATTA
CTATTCGTGCCGGCTGAATCAAAACCCAAACTACGGACAATACAGAAACCCCTCTCATTCGCATT
CTTATTAAGATCATTAAGAGAAGGGCAGCTAGAATCTTTAATGAAGGAAAGGGTCACTACAAGGA
CAGAGTATCTATGTTGTTGTAAACAAGTATTTCTGGTCATATACTACCTCAATCACTATAATATT
TTATATTAATATTATAATACAAAATAGAACGTCCCTAGAGAGCATCGTTATTCTGAGATCCATTT
AATAGACTGAATGGGAAATGTTGTCAAAGGGAAGGACCCAATTTGTTTTCTCGAACGCCAGGGGG
TCGTTAGGATTGAATATTACCTGTTTTCTGTTTTCCATCTCCATC
Found at i:549686 original size:13 final size:13
Alignment explanation
Indices: 549668--549694 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
549658 ATGAACGGCA
549668 ATTACTGGATTAC
1 ATTACTGGATTAC
549681 ATTACTGGATTAC
1 ATTACTGGATTAC
549694 A
1 A
549695 AAGTATCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
ATTACTGGATTAC
Left flanking sequence: Indices 549168 -- 549667
ATTTGGAATATCCAAATACATAGAACAATAAGCACGATTGTTTCCCCGAGTTTCTTTTCTTTTGC
CTATTTATATGAAAAGACAATACCGAGAGAGTGTTCATTTTTTTCAAATGGAATCGTTGAAAGAG
TTTTTTTCCTATCAAACTAAGCATTTCAATCCAATCACTAGGATTATTAACTAATTTCACTACTC
AAACTAATAAGGAATGGGTGTTGAAAGAAAGGATTCCCTTTTGCGAGAACCCGGAGTACTCTGTA
TGACATAGTCCCGATATAGCCTCCCTTTTCATCCAAAAGTAAAGGGACGAAAGAGGGGGTTCTCC
AAGATGAATTGTGGATCCAAGACAAGAATAGAAAGGCTTTCTTTTTTTGGGGAAGAAATAAAAGA
AATATAATAGAATCTTGGTTTTCGGCTCAATCCTTTTAGGATCAAATTGGGCCGAGTTTCTTTTA
ATTGCACCAATTCAATTATCAATTAAGATAAGAGAATGAACGGCA
Right flanking sequence: Indices 549695 -- 550194
AAGTATCCATTGCGGCAAACTCCAATTTGATCTCCTTCCATACTTCACAAGCAGCAGCCAATTCA
TGACTCCACTTGCAAGCCTTACCGATAATTGCATTCCCCTCAGTAGCAAGATCACGCCCCTCATT
ACGAGCTTGTACACATGCTTCTAGGGTAGGGCTACTCGATTAGCTACGGCACCTTAAGCATTTCC
CCAAGGGTGCCCTAAAGTTCCTCCACCGAATTGTAGTACGGAATCATCTCCAAAGATCTCGGTCA
GCGCAGGCATATGCCAAACGTGAATACCTCCTGAAGCCACAGGCAAAACGCCCGGTAGAGAGACC
CAATCTTGAGTGAAATAAATACCGCGGCTTCGGTCTTTTTCAACAAAATTATCGCGTAGTAAATC
AACGAAGCCCAGGGTGATGTCTCTTTCCCCTTCAAGTTTACCTACTACGGTACCGGCGTGAATAT
GATCTCCACCAGACATACGTAAGGCTTTCGCTAGTACACGAAAGT
Found at i:555386 original size:15 final size:15
Alignment explanation
Indices: 555366--555399 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
555356 CGAATCTGGC
555366 GAGGATGAAGAGGGG
1 GAGGATGAAGAGGGG
555381 GAGGATGAAGAGGGG
1 GAGGATGAAGAGGGG
555396 GAGG
1 GAGG
555400 GTTGGGATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.62, T:0.06
Consensus pattern (15 bp):
GAGGATGAAGAGGGG
Left flanking sequence: Indices 554866 -- 555365
CAATTTCGTTGAGTCTCCTGACAAAAGAGACCCCCTCGCGGTTTCTTTCTGATCCTATCTTGCCC
CGGTTTCTCTGTTCGATTCGACAAAAAGTACATTTCTATATAAGAATTGCATTATAGCGGGTCTA
GTTTAGTGGTAAAAGTGCAATTCGTTCCATTATTTCAACAATTCACTCCTTTAATTGTTACTCGA
CAAGGTACTCCGTCCTCTCTTTTGTGTAATAACCCACGGTGAGGTAAAGTACAATGATAGCTACT
ATAGTAATGAATTGCATTTTCGAAGAGCGAGTTACAAAATGTTCAAAGAAGTATAAGGGCCGCGC
ATTCAATGCGGTTAACCACGGCTTTGTCTTAGGATCTATGACCGCAACGATGAAAATCCATATGG
GAATCGCATGATCCTCATCCACCCATGCACAGGACACTCAAACTGGGTTTGTGGACAGCTTTCGA
TATGGCTTCGTGGAGGAGCCTTACCTTTTCCGTTACGAATCTGGC
Right flanking sequence: Indices 555400 -- 555899
GTTGGGATGCAGAGGATTCCAATGAGGAGCCCTGCGACCGCAAGAAGGATTTCCTTAGAATGAGA
GTCAGAAAGTTCCAAAGACTCCTTCGGGCGGGGGTTGGGTTGAAGAGGATGGGGAGTCTTTGGAT
CTCAAGAAGGCTTTATGCCGAGTGATTTTGAAAGAGTTACAAGGCCTCTTTTCTCTTCTCCTTTT
TCGACTTTTGCTATCAATCTTAGGCTGGTGACAATCTTTTCTCTGGATCCTCTTGTACGCCACGA
TTTATTTTATCGCTTGTCATACGCGGTAGGGATTGCCTCTGGTGCTTATGCGAGGCTTTTTCAAG
GCTATGTGGGAAGCACTGAAAGATTGCCCTTTTTCCTCGGTTTCCTTTAGGAAAAGGCTACATCC
TACAGGTATATTCCCTGTTCACCTTAGGCAGCTGGACTCATATGAAATGGGTATATGAGTATGAT
CCGCCTCTGCTTCTTTTTAGCTACCTGAAATTCCTTCGTCTTTTT
Found at i:565732 original size:14 final size:14
Alignment explanation
Indices: 565713--565742 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
565703 AGTATCCATC
565713 ATCTACATAACATA
1 ATCTACATAACATA
565727 ATCTACATAACATA
1 ATCTACATAACATA
565741 AT
1 AT
565743 AAGAATCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (14 bp):
ATCTACATAACATA
Left flanking sequence: Indices 565213 -- 565712
AACGAAAGTCAAATAAAATAGATAATCGTCCAGAAAGGCAGGGCTGGAAAGGCCATAGTAATGTA
AGGTCGAGCATTTAGAAACCCTGGTCGAGCATATGGATGGATACCCTCTGCCTCTTCATTTCATT
CGAGCATTTAGATATCAACCTCTTCACTTCGTTCTAGAACTGCGTACCTTTGTTCGAGCATTTCT
CAACCCTCTCCCTTTGGTAGGTCGAGCTATTTGTTTTCCCTCTCCCCGCCGCACTCGAATATAGA
AATCAAATAATGGGTGTTAGGGAACGGAGTAGAAAGAAGGGACATGAGGCGGTGACATAACCTTA
CTTTCGTTTCATCCTTCTTGTCCGGTAAGCAAGCAAGGGTGGGTACAGAAGCTTGAGCTTGAGTT
GCTTGTGTTAGGTCTCTTCGTTCAGAATGTTCGGGTAGTGCGGAGGTCCCATTTGTCTTACTGGC
TGTCTGAGTGGGACCAATAGGCTTGTCTTAGGATGAGTATCCATC
Right flanking sequence: Indices 565743 -- 566242
AAGAATCATTCCCCATAACAGCTAAAATGCATGATTCCTGAACTACCTCATTTCCTCTGCGCAAT
ATGCTCGAGTCCCTTTGGACCTCTTTCCTTCCTGCTCATTTCCTCTTTCCTCTGGTCGAGATAGT
AAGCTGCGATTTGGTTAAGTTCGAAGACCTTCAACACTAGGGAAAACTACCTAGTTAACAGCTAT
TTTTAGATGGTTTCTGGTTTGTTCTGTTGCTTAAGCTAATGCAACTAGTTGTTGTTGAAGGAACC
AACAGGTTACGTTACCTTTGAACACTTTCCTCACCTCTTCGTACTATCTTTCTATCTCGAAAGGT
CTGTTTTCAATTATAAAGATTTATCCCTTTCCTATCCCTTAGGTCGAGCTACTAGATAACCTCTA
AGTCGAGCTACTATGTCTTAAAGTCGAGCTCAGGAAAACAGTTGAGCTACTACGTCCCTTTCCCT
CTTCACTACGTTTGAGTAAGAAATCCCATCCCTCGGGGCGAGAGA
Found at i:567288 original size:27 final size:27
Alignment explanation
Indices: 567257--567309 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
567247 CGACTGCTTT
567257 CTTTCCTACTCTATTAATGCAGGACTG
1 CTTTCCTACTCTATTAATGCAGGACTG
567284 CTTTCCTACTCTATTAATGCAGGACT
1 CTTTCCTACTCTATTAATGCAGGACT
567310 TCTGTCTCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (27 bp):
CTTTCCTACTCTATTAATGCAGGACTG
Left flanking sequence: Indices 566757 -- 567256
GGGTCCTATCAGGTATAGTTCCGACCATAATTGTACTCATCTCGAACCTTGCTTAGATTAGAAAG
AGCACACTAAGGCAATCCTAACACAGCCCTGCAACAAGCCGTTCCAAATCGACTAAGAGAGAGCC
GACTGCTTAGAAACGAAACTCTAGCCGATTGAGAGCCCACTGCTTTCTTTCCTAGCCTCTTCACT
TTGTTTGAGACCCTTGGGCCTAAAGAAGAACTTGAGATCTAGGGAACCCTTTGTCTATCAACTAC
CTACAACAATTCCTCTTCGTTTCACTCGAGATATTTATAACCTCTTCGGGAGAATCCGCTCTACC
TCATAGGTTCCGGTTTCACTCGAGAACTTCTTTCCTCTTCTAGAGAATTGGCATAGGTGGAGGGT
ATGCTTGAGTCACAAAGTACCTCTTTCAGAGAAATCAATACCTTTTCGCTCGAGCAATAAGAACC
TCATCAACAACAAGAAACTGCTTTCCATCTCTAGCCGACTGCTTT
Right flanking sequence: Indices 567310 -- 567809
TCTGTCTCGCCTGCTGTTGACATAAACACATATTACATCCTTCAGACTTCTCTATTGTACCTTTC
CTAACAAACACCCTACTCATACTAATAACACCCTACTCATACTAACACAAGCAACATTTCCTACC
TGAGACTCCTCACACGCAACAACATTACACTGCTTTCCTATTGTTTTCGACGAGCTGCTTGGAAC
GCTAACCCAGTCCCTTCGCTCACTAACACTAATATGCTTGCTCACTTATATGCTCATGCTCACTT
ATATGAGCCTTCGTCTATCTAGGTGAGTTCCAGTTCCTTCCTCTTTCGTTTTTTAGTCCGAATCG
GTGAAGTGCTTTCCTACTAATCCTATCTACTAATCGATGGCCACTTCTTTTTTTAGCTATTGCTA
GGCACCTCTTCATGCAAGGGATTCTTTGATTTCATACATCTTCACAGTCTGCTAAGCAATCCCAA
ACAGTTGAACCCTAATCATCTCTCATTCAAGGTCAAGGAATCCTC
Found at i:567406 original size:20 final size:20
Alignment explanation
Indices: 567381--567419 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
567371 TTTCCTAACA
567381 AACACCCTACTCATACTAAT
1 AACACCCTACTCATACTAAT
567401 AACACCCTACTCATACTAA
1 AACACCCTACTCATACTAA
567420 CACAAGCAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.36, G:0.00, T:0.23
Consensus pattern (20 bp):
AACACCCTACTCATACTAAT
Left flanking sequence: Indices 566881 -- 567380
AGAGCCGACTGCTTAGAAACGAAACTCTAGCCGATTGAGAGCCCACTGCTTTCTTTCCTAGCCTC
TTCACTTTGTTTGAGACCCTTGGGCCTAAAGAAGAACTTGAGATCTAGGGAACCCTTTGTCTATC
AACTACCTACAACAATTCCTCTTCGTTTCACTCGAGATATTTATAACCTCTTCGGGAGAATCCGC
TCTACCTCATAGGTTCCGGTTTCACTCGAGAACTTCTTTCCTCTTCTAGAGAATTGGCATAGGTG
GAGGGTATGCTTGAGTCACAAAGTACCTCTTTCAGAGAAATCAATACCTTTTCGCTCGAGCAATA
AGAACCTCATCAACAACAAGAAACTGCTTTCCATCTCTAGCCGACTGCTTTCTTTCCTACTCTAT
TAATGCAGGACTGCTTTCCTACTCTATTAATGCAGGACTTCTGTCTCGCCTGCTGTTGACATAAA
CACATATTACATCCTTCAGACTTCTCTATTGTACCTTTCCTAACA
Right flanking sequence: Indices 567420 -- 567919
CACAAGCAACATTTCCTACCTGAGACTCCTCACACGCAACAACATTACACTGCTTTCCTATTGTT
TTCGACGAGCTGCTTGGAACGCTAACCCAGTCCCTTCGCTCACTAACACTAATATGCTTGCTCAC
TTATATGCTCATGCTCACTTATATGAGCCTTCGTCTATCTAGGTGAGTTCCAGTTCCTTCCTCTT
TCGTTTTTTAGTCCGAATCGGTGAAGTGCTTTCCTACTAATCCTATCTACTAATCGATGGCCACT
TCTTTTTTTAGCTATTGCTAGGCACCTCTTCATGCAAGGGATTCTTTGATTTCATACATCTTCAC
AGTCTGCTAAGCAATCCCAAACAGTTGAACCCTAATCATCTCTCATTCAAGGTCAAGGAATCCTC
TCTTTTCCCTACGCAACTTTCCAATCTGGGCTCTTCTAAAGACTATCCTACTCTAACATTCCGAT
CTCAACCCTTATCTTTTCTTAGAGAAACCAACAGATCCACATCTA
Found at i:567555 original size:16 final size:17
Alignment explanation
Indices: 567531--567574 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
567521 CGCTCACTAA
*
567531 CACTAATATGCT-TGCT
1 CACTTATATGCTATGCT
567547 CACTTATATGCTCATGCT
1 CACTTATATGCT-ATGCT
567565 CACTTATATG
1 CACTTATATG
567575 AGCCTTCGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 11 0.44
18 14 0.56
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (17 bp):
CACTTATATGCTATGCT
Left flanking sequence: Indices 567031 -- 567530
CTTCGTTTCACTCGAGATATTTATAACCTCTTCGGGAGAATCCGCTCTACCTCATAGGTTCCGGT
TTCACTCGAGAACTTCTTTCCTCTTCTAGAGAATTGGCATAGGTGGAGGGTATGCTTGAGTCACA
AAGTACCTCTTTCAGAGAAATCAATACCTTTTCGCTCGAGCAATAAGAACCTCATCAACAACAAG
AAACTGCTTTCCATCTCTAGCCGACTGCTTTCTTTCCTACTCTATTAATGCAGGACTGCTTTCCT
ACTCTATTAATGCAGGACTTCTGTCTCGCCTGCTGTTGACATAAACACATATTACATCCTTCAGA
CTTCTCTATTGTACCTTTCCTAACAAACACCCTACTCATACTAATAACACCCTACTCATACTAAC
ACAAGCAACATTTCCTACCTGAGACTCCTCACACGCAACAACATTACACTGCTTTCCTATTGTTT
TCGACGAGCTGCTTGGAACGCTAACCCAGTCCCTTCGCTCACTAA
Right flanking sequence: Indices 567575 -- 568074
AGCCTTCGTCTATCTAGGTGAGTTCCAGTTCCTTCCTCTTTCGTTTTTTAGTCCGAATCGGTGAA
GTGCTTTCCTACTAATCCTATCTACTAATCGATGGCCACTTCTTTTTTTAGCTATTGCTAGGCAC
CTCTTCATGCAAGGGATTCTTTGATTTCATACATCTTCACAGTCTGCTAAGCAATCCCAAACAGT
TGAACCCTAATCATCTCTCATTCAAGGTCAAGGAATCCTCTCTTTTCCCTACGCAACTTTCCAAT
CTGGGCTCTTCTAAAGACTATCCTACTCTAACATTCCGATCTCAACCCTTATCTTTTCTTAGAGA
AACCAACAGATCCACATCTATCTATCTCTTTCTTTCAGCCGATAAAACACCAATCCTACACCAAC
AGTGCTAATTCACTACCTTGCGACCTAGCCTACGCAGAGAATTAGGTAGGGGTTTCTCTCTAGTT
TGAACCTAGGGGAACCTACTCCCTCCTACTAGTCTTACCCGATCA
Found at i:568119 original size:16 final size:16
Alignment explanation
Indices: 568098--568193 Score: 165
Period size: 16 Copynumber: 5.9 Consensus size: 16
568088 ACCGACACTA
568098 ACTACCTTTCCTAAAC
1 ACTACCTTTCCTAAAC
568114 ACTACCTTTCCTAAAC
1 ACTACCTTTCCTAAAC
*
568130 ACTACCTTTCCTACAC
1 ACTACCTTTCCTAAAC
568146 TAACTACCTTTCCTAAAC
1 --ACTACCTTTCCTAAAC
568164 ACTACCTTTCCTAAAC
1 ACTACCTTTCCTAAAC
568180 ACTACCTTTCCTAA
1 ACTACCTTTCCTAA
568194 CAGCAGCGCA
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
16 61 0.80
18 15 0.20
ACGTcount: A:0.30, C:0.38, G:0.00, T:0.32
Consensus pattern (16 bp):
ACTACCTTTCCTAAAC
Left flanking sequence: Indices 567598 -- 568097
TCCAGTTCCTTCCTCTTTCGTTTTTTAGTCCGAATCGGTGAAGTGCTTTCCTACTAATCCTATCT
ACTAATCGATGGCCACTTCTTTTTTTAGCTATTGCTAGGCACCTCTTCATGCAAGGGATTCTTTG
ATTTCATACATCTTCACAGTCTGCTAAGCAATCCCAAACAGTTGAACCCTAATCATCTCTCATTC
AAGGTCAAGGAATCCTCTCTTTTCCCTACGCAACTTTCCAATCTGGGCTCTTCTAAAGACTATCC
TACTCTAACATTCCGATCTCAACCCTTATCTTTTCTTAGAGAAACCAACAGATCCACATCTATCT
ATCTCTTTCTTTCAGCCGATAAAACACCAATCCTACACCAACAGTGCTAATTCACTACCTTGCGA
CCTAGCCTACGCAGAGAATTAGGTAGGGGTTTCTCTCTAGTTTGAACCTAGGGGAACCTACTCCC
TCCTACTAGTCTTACCCGATCATCTTAAGGATGCCACCGACACTA
Right flanking sequence: Indices 568194 -- 568693
CAGCAGCGCACAGATCCTCGAAGAAGGATAAGGATCTAGACGTTCTCTACCTAACCTCTTCTTAC
AGTCAGAAATCCCTCCCCCGTCGAACTATTTCATAACCTTACAACCGCCATAACCGTTTTTCGCT
AACCTACAGTCCCAGTGTGGCTGACCCTATTTTATCAGGATTGCTTGGTCTCCAGCCCTTCTGCC
TACGAAGTGAGCTAGCAGAATCATTTCTATCCAGTACTCACTCCTTTCCCAGCGTTACGGCACTC
GGCGGGGGTGCTCTTGGTCCAGTGATAGCGAGCGTGTGGGCTCTTACTCCTACACTGCGAACCAT
TGCCTCCTTTGATGGAAGTTAGTAATCCAGATCAACTCTGCCTCTTCCACTTTTTCCCGTCCTTA
CCGACCACTCTCCTCAATAGAGCATTCAATAGAGCATATAGATAAATCAGAGTCATAAATGACGA
GCATATAGATAACCATAACCTCTGTCTCACTCACGATCAAATTCC
Found at i:568151 original size:50 final size:50
Alignment explanation
Indices: 568092--568192 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
568082 GATGCCACCG
568092 ACACTAACTACCTTTCCTAAACACTACCTTTCCTAAACACTACCTTTCCT
1 ACACTAACTACCTTTCCTAAACACTACCTTTCCTAAACACTACCTTTCCT
568142 ACACTAACTACCTTTCCTAAACACTACCTTTCCTAAACACTACCTTTCCT
1 ACACTAACTACCTTTCCTAAACACTACCTTTCCTAAACACTACCTTTCCT
568192 A
1 A
568193 ACAGCAGCGC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.32
Consensus pattern (50 bp):
ACACTAACTACCTTTCCTAAACACTACCTTTCCTAAACACTACCTTTCCT
Left flanking sequence: Indices 567592 -- 568091
GTGAGTTCCAGTTCCTTCCTCTTTCGTTTTTTAGTCCGAATCGGTGAAGTGCTTTCCTACTAATC
CTATCTACTAATCGATGGCCACTTCTTTTTTTAGCTATTGCTAGGCACCTCTTCATGCAAGGGAT
TCTTTGATTTCATACATCTTCACAGTCTGCTAAGCAATCCCAAACAGTTGAACCCTAATCATCTC
TCATTCAAGGTCAAGGAATCCTCTCTTTTCCCTACGCAACTTTCCAATCTGGGCTCTTCTAAAGA
CTATCCTACTCTAACATTCCGATCTCAACCCTTATCTTTTCTTAGAGAAACCAACAGATCCACAT
CTATCTATCTCTTTCTTTCAGCCGATAAAACACCAATCCTACACCAACAGTGCTAATTCACTACC
TTGCGACCTAGCCTACGCAGAGAATTAGGTAGGGGTTTCTCTCTAGTTTGAACCTAGGGGAACCT
ACTCCCTCCTACTAGTCTTACCCGATCATCTTAAGGATGCCACCG
Right flanking sequence: Indices 568193 -- 568692
ACAGCAGCGCACAGATCCTCGAAGAAGGATAAGGATCTAGACGTTCTCTACCTAACCTCTTCTTA
CAGTCAGAAATCCCTCCCCCGTCGAACTATTTCATAACCTTACAACCGCCATAACCGTTTTTCGC
TAACCTACAGTCCCAGTGTGGCTGACCCTATTTTATCAGGATTGCTTGGTCTCCAGCCCTTCTGC
CTACGAAGTGAGCTAGCAGAATCATTTCTATCCAGTACTCACTCCTTTCCCAGCGTTACGGCACT
CGGCGGGGGTGCTCTTGGTCCAGTGATAGCGAGCGTGTGGGCTCTTACTCCTACACTGCGAACCA
TTGCCTCCTTTGATGGAAGTTAGTAATCCAGATCAACTCTGCCTCTTCCACTTTTTCCCGTCCTT
ACCGACCACTCTCCTCAATAGAGCATTCAATAGAGCATATAGATAAATCAGAGTCATAAATGACG
AGCATATAGATAACCATAACCTCTGTCTCACTCACGATCAAATTC
Found at i:572924 original size:22 final size:23
Alignment explanation
Indices: 572889--572932 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
572879 ACATAAAGAG
572889 TGACCCAAAGGGATGAGTTTTCC
1 TGACCCAAAGGGATGAGTTTTCC
572912 TGACCC-AAGGGATGAGTTTTC
1 TGACCCAAAGGGATGAGTTTTC
572933 TTTCTTGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (23 bp):
TGACCCAAAGGGATGAGTTTTCC
Left flanking sequence: Indices 572389 -- 572888
CGTGCATTCTCTTTTTACCGGCTCGGAAAAGTGCCGTGCCAGCCCGGCCCGCAAGAATCCCTTTT
GTTCCGCTATGCTCTTGTTAAATAACCGTTGATCATTGATCTGGCATACTGTAACATTTGGTACT
GGAGTTTATATCTCCAATTTAGACTTCATTTTCAACTGAAATTCAATTTGGGGTTTAGCCTATTC
CTCTATCTTTTCAATTTGATGCTCGCTTTGCTATATCTTACCCTCAGACAGACTAACATCAGCCA
TATGACCCTTCCTTCAGGTTGAACACGGTCCTAGCACGAAAGTGACCTAAACGATTCACACAAAT
TCATATCATTAGCTGACGCACATGGTCTTCAACCAAAGAAGGTCTTCAAAGGAAGCTTTTAGCAC
ATATGTATACCAATGGACATGCCCATAGATTGACTCCTTGGAATGTCATCCCAAAACTCTGAGTT
CATACACGAAAAGAAAGAATAATCCTATTTAGTTTACATAAAGAG
Right flanking sequence: Indices 572933 -- 573432
TTTCTTGGTTTTGTATGACCGTAGTGAGAGAAGCGAACGAGGGAAGGGGTTTCCTCATTATCCAA
AGCATGCAGGGTTATTCTCTTCCCTCTAACAATAAAGAAAACAAACAAAGGGCGGGGGAAAGCTG
CCGTGGTTCAAGGCAGTGGATTGTATGTGTTTTCGGTAGGGAACTCTTTATAGCGTTGCTGTTTT
CCCTTGTCTTTTGAGCTGAGGAAGAGGAAGAGGAGCGAAGCGCTCGGAAGAGGATTCACTCGAGC
ACTTTGTCCCCGACCCCGAGGTAAGGTATCCATTTTTTGTTTACCCTGCACCCCTTTACTTGCTT
GCTTTTTTGTTTTGCTCGGTATACCTCACCCTACTTGCTTTCCTTATCTCAACACTAGCTCCTGG
CCTTTGTTTGCCTACTGTCTGTTCTTGGTTGCTTTCGGGAGCTCGCTCTTAACTCACCGAAGGAA
AGGAGTTCTAATCAAAAGACAGATCTTCTTGCTTGCTTGAGGGAG
Found at i:582687 original size:31 final size:31
Alignment explanation
Indices: 582649--582714 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
582639 TGAGAAGACA
*
582649 AGGGTTTGTTTACAGG-CTCTACTATAAAGAG
1 AGGGTTTGTTTACAGGAAT-TACTATAAAGAG
*
582680 AGGGTTTGTTTACAGGAATTACTATAAGGAG
1 AGGGTTTGTTTACAGGAATTACTATAAAGAG
582711 AGGG
1 AGGG
582715 AGGAAATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (31 bp):
AGGGTTTGTTTACAGGAATTACTATAAAGAG
Left flanking sequence: Indices 582149 -- 582648
CTATTCCATTATCCTAATGAGGGACCAACCAGTTCAAGGTACAGGGTATCGAGATATCAAGCAGA
TGTAGATGCAAGGAAATCCTACTCTAAAATGAACCAATTATTCGCTATTCAATTCATTCCCCTTA
GGGGAGTATGCCCAAACAAGGTAGAAAGACTGAACTTGGTATTACACATTACCCACGTCGGTCGA
AACCAAGTAAAGGACTCCTTCTTTTAAGGGACCAGTAAGAGTAATGACTCAAGGAACTCAACCAA
TACAGAAAGACAAAGGATCCCTGATCAATCACATTGTGGGGTTGGGATGAAGTTACGTATCACAA
ATAAATAGGACTCTAGGTTAGGGATCGGATCAAGTCACTCCAACGAAAGGTGAGGGATTTATGGA
ATGTATATGGTAATGTAATTGGCTCGCCCTCGTGGGGCGAGGGGGACCTCATAGGCAGAGGGTCG
ACGCCTAGGGTGAGGGATAAGATAAGGCACTCGACTGAGAAGACA
Right flanking sequence: Indices 582715 -- 583214
AGGAAATTGATTTGCTCACCCGATGCGGCCAAAAATGACCAAGAGGAAAAAGAGAGAGTACGATG
GAATAATAGCTCCCTTCGTTCCTTTTCCCTTCGTTCCTTTGTTGAAATGAAAGCAGATAGGACAG
TTGTTTTGCTTAACATGGGAGTCGAGTATCACTATACAGCCAGAAGTCAGTTACCAAATGAGGTA
GCTTGGCGATAAGCGAACCAATGGAAAGAATCGAGGCAATTCAGTGCTTTAAAGTAGTGATTCAA
GTTTTGCTATTGATTGGTTGAATTGCGATGAAATAGAAAGAAATGAACCCCAATTCTACCCCAAA
AAGCGATACTCCCCTATAGGAAAAACCAAGCGAAATCCTTCTCCTTTTCAATCCTTTGGAAAGTC
AGTTTTGACCCAACAAAACGGAGAGTCCGAAGATGGAAAAGAAATGACTTAGAAGAGACATTTTT
TCACGATTGAAAAAAAAAACGAGAGAAAAAAGTGATCGAACCCCC
Found at i:582810 original size:15 final size:15
Alignment explanation
Indices: 582790--582819 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
582780 GAATAATAGC
582790 TCCCTTCGTTCCTTT
1 TCCCTTCGTTCCTTT
582805 TCCCTTCGTTCCTTT
1 TCCCTTCGTTCCTTT
582820 GTTGAAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.40, G:0.07, T:0.53
Consensus pattern (15 bp):
TCCCTTCGTTCCTTT
Left flanking sequence: Indices 582290 -- 582789
CCAAACAAGGTAGAAAGACTGAACTTGGTATTACACATTACCCACGTCGGTCGAAACCAAGTAAA
GGACTCCTTCTTTTAAGGGACCAGTAAGAGTAATGACTCAAGGAACTCAACCAATACAGAAAGAC
AAAGGATCCCTGATCAATCACATTGTGGGGTTGGGATGAAGTTACGTATCACAAATAAATAGGAC
TCTAGGTTAGGGATCGGATCAAGTCACTCCAACGAAAGGTGAGGGATTTATGGAATGTATATGGT
AATGTAATTGGCTCGCCCTCGTGGGGCGAGGGGGACCTCATAGGCAGAGGGTCGACGCCTAGGGT
GAGGGATAAGATAAGGCACTCGACTGAGAAGACAAGGGTTTGTTTACAGGCTCTACTATAAAGAG
AGGGTTTGTTTACAGGAATTACTATAAGGAGAGGGAGGAAATTGATTTGCTCACCCGATGCGGCC
AAAAATGACCAAGAGGAAAAAGAGAGAGTACGATGGAATAATAGC
Right flanking sequence: Indices 582820 -- 583319
GTTGAAATGAAAGCAGATAGGACAGTTGTTTTGCTTAACATGGGAGTCGAGTATCACTATACAGC
CAGAAGTCAGTTACCAAATGAGGTAGCTTGGCGATAAGCGAACCAATGGAAAGAATCGAGGCAAT
TCAGTGCTTTAAAGTAGTGATTCAAGTTTTGCTATTGATTGGTTGAATTGCGATGAAATAGAAAG
AAATGAACCCCAATTCTACCCCAAAAAGCGATACTCCCCTATAGGAAAAACCAAGCGAAATCCTT
CTCCTTTTCAATCCTTTGGAAAGTCAGTTTTGACCCAACAAAACGGAGAGTCCGAAGATGGAAAA
GAAATGACTTAGAAGAGACATTTTTTCACGATTGAAAAAAAAAACGAGAGAAAAAAGTGATCGAA
CCCCCGTGTTTTGGGTATCAATTGGTCGAAAATGCGCCATTTCTAGGAGGAAAGAATTGACTATA
AAAAACATACGGGAATGTAGAAACCTGCGGGTTCTAATCCAGGTA
Found at i:583826 original size:19 final size:18
Alignment explanation
Indices: 583802--583842 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
583792 GCTCCCCTTG
*
583802 CTTGAGTTGCTTAGCTGC
1 CTTGAGTTCCTTAGCTGC
583820 ACTTGAGTTCCTTAGCTGC
1 -CTTGAGTTCCTTAGCTGC
583839 CTTG
1 CTTG
583843 CTTGGTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (18 bp):
CTTGAGTTCCTTAGCTGC
Left flanking sequence: Indices 583302 -- 583801
CGGGTTCTAATCCAGGTACGGCTCAATTGTATTTGTATTTCTGCCCGGGCACATTCCTTTATCTC
TCGTTATCCCTATTCATAAAACCCGAGTTATTAAATAGATCGTTCGGGAAGCAAGTCTACATCTG
TATCCCGGATTACTTCCTTTAGTTGCCCTCTTACTCGGCTGCTAAGGGGAGGAATGAATCCCTGC
TCGAGTAAGGATTTAAGGGAAATACCACCAACTCCCGGATAAGGTCAACCTGTAATTGATTCCAT
AGGCCTAAATCGTTCGTAAAATAACTCCGATATATGAATTCTGAATCCCTATAAACCGGATCCCC
CATGTGTTCTAGACCTCTATCTCAATGTCTTTATCGATTTACCTATATTCAATAACTTCACCAGC
TTAGCTTTACTGAGGTTGTACCATCTCTAACATAGTATTCCCCGGGATAGGTAAAACCGAGTCAA
ATGGGATATAGAGTTGCGTAATCCCTGTTGTACCTGCTCCCCTTG
Right flanking sequence: Indices 583843 -- 584342
CTTGGTTTTCCTTGCTTTCATATCAGTATTTCCATATTCGACTAGTTAGACTCGTTAGATATGAG
ATTAGGTAATCCATTTTAGAGTCCTAAATCTAGCGTTTATCCGTTCTGATATATGAATACCTATT
GATTCCTATAGATTTGGTAGTTATTTCTAGATTCGTAAGATTAGGGCTCAAACCTACGTAATATT
TTGGATAGGATTTCTTTTATCTTTTCCTCTCCTCACCCCTATTGGTCGAGATATAAATAACCTAT
TGGTAACAATAAGACTTAGTCTCTTTTGTACCAAAGTTCGAAAAAGGGAACATTTAGATACTCCA
TCTATAAGCAAAAGCTTACTTGACTATTTTCCCTCGGTAGCGAGATTGAGGTTTTTAACTAGTTT
ATCTCGCCCATATATAGATGGCTTGGATTCATGTCTTTGCAACCACACAAAGAAGAGAGGTTCGA
CAGTTCCTATCTTATCTTTCGGCTCAGTCTCATCTCAGTCTTGCA
Found at i:586711 original size:18 final size:18
Alignment explanation
Indices: 586688--586723 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
586678 TCAGGTCTCT
586688 TGACTAAGAGCAAGAAGA
1 TGACTAAGAGCAAGAAGA
586706 TGACTAAGAGCAAGAAGA
1 TGACTAAGAGCAAGAAGA
586724 GGATGATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.28, T:0.11
Consensus pattern (18 bp):
TGACTAAGAGCAAGAAGA
Left flanking sequence: Indices 586188 -- 586687
ACCTTTTCCGTCACGAATCTGACGAGGATGAAGAGGGGGAGGGTTGGGATGCAGAGGATTCCAAT
GAGGAGCCCTGCGACCGCAAGAAGGATTTCCTTAGAATGAGAGTCAGAGAGCTCCATCCTTCGGG
AGCTCGGGGGTTGGGTTGAGGAGGATGGGGAGTCTTTGGACCTCAAGAAGGCTTTATGCCGAGTG
ATTTTGAAAGAGTTACCCTCTTTTCTCTTCTCCTTTTTCTCCTTATGTATATTTTGGTATGGGGT
ATCGTGACCCGCTGGCTTATGCCTACTGCATTTGCTAGGGATTCTTTGGAAATATTTGGAATAGA
CGACCTACGAATGGGTCGTATTACTCTTCATTTCGATTTGATGCAATAAGGTTCTTTCCACTTGG
TTTCATGTTGATAAGATCCTTAGATTTAGCAGCCCCTTACTTAGGATGGTATAGCCTTTATCGCG
TGTCATACGCGGTAAAGAATACGAATGCTATTCATTCAGGTCTCT
Right flanking sequence: Indices 586724 -- 587223
GGATGATTCCACTGCTCTTCTTAGTGAGATTAGCCGTGGGTGTGTTCGTATAGGGTTAGGAAAAG
GTCTTTTCGTTGGATCTAGTAGCTATCGAGAAGACAAGACAGAGGCTATAAAACATGCATTTAAC
CGCCTAAATCATACTCTCATGGGATGGGAGATTACACATGAGGATGTAAATACGGCCGTTAAACG
GCTCCTTATCTTTGTCTGTGTCGGTTTCCTTCTTGTAAAGACAGATAGCTGAAAGAGTGAGCCAA
AGGATTGAAAAGGATTTGGATTTCATACCTTGTCTTTGTTTTGTTTGGGTAGAGCAATTACAAAG
CTAACAGTTCATTTGCCGGACCGGACCTGGATTCGAACCCTAAGGTTTAGGAATTACCGTATGTG
GTGTTACCTTTTTCTTTGTATCCGAGAAAACAAGCTAAAATCACGGGAAAACGCAACTTTTTTGT
TAAGTTTTTAAAAGTATTTTGTTATGACATAATATACGCGATTCT
Found at i:598679 original size:28 final size:28
Alignment explanation
Indices: 598639--598712 Score: 148
Period size: 28 Copynumber: 2.6 Consensus size: 28
598629 ACCAAGTGTT
598639 GACTTGCCAGGAGAGGTCGAAAGTGCTC
1 GACTTGCCAGGAGAGGTCGAAAGTGCTC
598667 GACTTGCCAGGAGAGGTCGAAAGTGCTC
1 GACTTGCCAGGAGAGGTCGAAAGTGCTC
598695 GACTTGCCAGGAGAGGTC
1 GACTTGCCAGGAGAGGTC
598713 ATTTCTTTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.24, C:0.22, G:0.36, T:0.18
Consensus pattern (28 bp):
GACTTGCCAGGAGAGGTCGAAAGTGCTC
Left flanking sequence: Indices 598139 -- 598638
TCTATTGAAGGACCAACGCACTTATCTGTCTGCCTATCTGTATGCACAAGCATTTACATTCTGCT
TTTTCTTTCACGGAAAAAAGTGATTGGAGGCGAGCTCATGAAGAACCATGTCCCTGGCTGGCTAA
CATTATTCCTTCTTAGGTAGGTCCGTGCCCATGCCAGTCCTCTATACCTTATACCTGGTCTGCCA
TTTTTGATAGCATTTTTTGAAGTGGCTCTACTGCGAGCTTCGCTTCCTTTCACTGGAAATGAAAT
TCGAAGTTGTAAGCAGACCTTAGCGCTTAACTGCTCATAGGATATTCTATTTCTTCCAGAATGCG
TCTTATCACTCTTGCTTCAAAGATCCGTTCCTAATAGGTGGAGGCTTATTCACTTCCCCCCAATC
AAGGATGAAAACTAAGAAAGGGCAGAGCCTAAGACAGTCAAAGGGAGAGGTCATTTCTTTCTCGG
GAGAGGAGAGGAGATGCTCGACTGAAAGGAGAGGTACCAAGTGTT
Right flanking sequence: Indices 598713 -- 599212
ATTTCTTTCTCTTTCGCCGTAAAGTGAAAGTGCGCCTGATAAGGCAACGAAGTAATGAGTTGGAG
GTATTAACCGATTGACAGACAAAGGTCAAAAACCTTGCATTCGACTGATATGATCTCTTGATCAT
TCAGGACACACGATCTGTGACACCGGCACTTTAGTCAAAGGAGCTGCCAGCCCTTATCAGACTAA
GTCAACGGATTCCACCTAAGATGTATAAGTCCAAGATGAACTATGTACACAATTCACTCAGAGTC
CTCATTAAGCACAACACAAAGAAAGTCAGTCCCTTATAGAGATAAGCAATATGGTCAAAGGTACT
TCAATGACAGAAAGCTAAAAGAAGTTTAGCTTCTCATAGGGTTTTGATCTAAAAGATATGCTACA
GATATTAGTAATAAACCCAGTCAAAGAATTGACCGACATCAATCATCTTTTCATCCATCAAAACT
ACTAAGGTTTTTGACCTTATGCTAAAATATCTAACTTATCTTCGT
Found at i:601989 original size:30 final size:30
Alignment explanation
Indices: 601954--602012 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
601944 ATTTCCCCAA
601954 TATTCATATTATTTCTGAATTTCAAGAGGG
1 TATTCATATTATTTCTGAATTTCAAGAGGG
601984 TATTCATATTATTTCTGAATTTCAAGAGG
1 TATTCATATTATTTCTGAATTTCAAGAGG
602013 TCTTCGAACC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (30 bp):
TATTCATATTATTTCTGAATTTCAAGAGGG
Left flanking sequence: Indices 601454 -- 601953
TATATAGTACCTCCCTCTTTGTAGGTACTTTCGAGTACTTGTACTTGTAATTGTAAGACACTCAA
CTGTAAGGAAAAGCTCTTTATCATCTATTGCTCTAGTTTCTACTTTCCAGTTTCCAGGTCATTTA
TTTCTCGTTGTTTGTGAGAGGTCAGAAGGACTCGACTTGCCATCCAAGGTTATTTATTACTCGAC
CTTTGTGAGAGGTTATTTATATACTCGACTGAAAAGGAGAGGCACGAAGGTTAAGACCAAAGTGA
GAGGTATTTATTACTCGACTGAAAAGGAGAGGTTATTTATATACCCTATTGTCACGAAGGACTCG
ACTGTTAAGGAGAGGTAATTTATATACTCGACCAAAGTGAGAGGAGCGAAGGTGCGAGACTGAAA
GAAGAGGAAGAGGTAACAAGTGCTCAACCATGGGGAAGAGGGATAGTTTTCCTTAGATTTTCCTT
AGGTGTAAGGACCGTATTCGATTCGAAAGTGCCTAATTTCCCCAA
Right flanking sequence: Indices 602013 -- 602512
TCTTCGAACCTGCCGGAAATTGATTGTTGACTGTGCCGGAAGAGGTTTGCTCTGCTAGCTCTACT
AGGGTTACAGGAATACGGTTGTGAAACAAAGCAATACATACAGTTGTTTCGGTCAGAGAAGAGAG
TAGGTAATGTCAGCTAATCCCCCTAAAGAAAGAGAGAACTGTAGCTAATAAATCAAGAGAGGGTA
CGCCGTTAGTGAGTGAGCTCCTTTTGTCACGAAGGTAATCGCTATATACTTGGGTAAAACTTCGT
TAGCAGAGGGCAGACTCTTCCAGCGGCAGCGTTAATAGAATTAGAATTACATAGTCCATATTCCC
ATAGTCCATATTCGTTTGTTCTGTTCTCTTGTTCCTTCGTTCCTTTGTCTATCAACGAAGCTACT
TTACGTTCCTTCGTCTATCAACAAAGCGACTTTACCAAAGTCTATCAACTTCTAGACTTGTAGTT
CCAAAGTCTATCAACGAAGCTACTTTGTCCCTCTTCCTGAGTTGG
Found at i:602342 original size:15 final size:15
Alignment explanation
Indices: 602322--602350 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
602312 ATTAGAATTA
602322 CATAGTCCATATTCC
1 CATAGTCCATATTCC
602337 CATAGTCCATATTC
1 CATAGTCCATATTC
602351 GTTTGTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.34
Consensus pattern (15 bp):
CATAGTCCATATTCC
Left flanking sequence: Indices 601822 -- 602321
GAGCGAAGGTGCGAGACTGAAAGAAGAGGAAGAGGTAACAAGTGCTCAACCATGGGGAAGAGGGA
TAGTTTTCCTTAGATTTTCCTTAGGTGTAAGGACCGTATTCGATTCGAAAGTGCCTAATTTCCCC
AATATTCATATTATTTCTGAATTTCAAGAGGGTATTCATATTATTTCTGAATTTCAAGAGGTCTT
CGAACCTGCCGGAAATTGATTGTTGACTGTGCCGGAAGAGGTTTGCTCTGCTAGCTCTACTAGGG
TTACAGGAATACGGTTGTGAAACAAAGCAATACATACAGTTGTTTCGGTCAGAGAAGAGAGTAGG
TAATGTCAGCTAATCCCCCTAAAGAAAGAGAGAACTGTAGCTAATAAATCAAGAGAGGGTACGCC
GTTAGTGAGTGAGCTCCTTTTGTCACGAAGGTAATCGCTATATACTTGGGTAAAACTTCGTTAGC
AGAGGGCAGACTCTTCCAGCGGCAGCGTTAATAGAATTAGAATTA
Right flanking sequence: Indices 602351 -- 602850
GTTTGTTCTGTTCTCTTGTTCCTTCGTTCCTTTGTCTATCAACGAAGCTACTTTACGTTCCTTCG
TCTATCAACAAAGCGACTTTACCAAAGTCTATCAACTTCTAGACTTGTAGTTCCAAAGTCTATCA
ACGAAGCTACTTTGTCCCTCTTCCTGAGTTGGGAGTTCCTCTCTTCTGTTCGCTAGTTCTTGAGG
TAGCTAGTGCCGAGGTTGGAGTTGATAGCTAGTTGTTAAGGAAAGAAAGCGCATAGGGTTATCAT
ATAGAAATCTTTCTAAGGGAAGTGAGTTTCGGTAAGGGAAGAGATAAATCTTTTCTCTCGTTTTA
GAGCTCTCTATCGAGCTTCTCTCTGGTTTCGTAGATCTTTCTATACCAGTTGTTCTGGGTTCAAC
TAGCTTGAAGATAGATAGCCCCAAGTCCAGAGTTTTCCGGCATGTTTGCGATGAGTTTTCCTGAG
GGACAAAGTAACTCGACCATTAGGGAAGAGGGACAAAGTCCTCGA
Found at i:602410 original size:31 final size:31
Alignment explanation
Indices: 602375--602437 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
602365 CTTGTTCCTT
* * *
602375 CGTTCCTTTGTCTATCAACGAAGCTACTTTA
1 CGTTCCTTCGTCTATCAACAAAGCGACTTTA
602406 CGTTCCTTCGTCTATCAACAAAGCGACTTTA
1 CGTTCCTTCGTCTATCAACAAAGCGACTTTA
602437 C
1 C
602438 CAAAGTCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.35
Consensus pattern (31 bp):
CGTTCCTTCGTCTATCAACAAAGCGACTTTA
Left flanking sequence: Indices 601875 -- 602374
GGGGAAGAGGGATAGTTTTCCTTAGATTTTCCTTAGGTGTAAGGACCGTATTCGATTCGAAAGTG
CCTAATTTCCCCAATATTCATATTATTTCTGAATTTCAAGAGGGTATTCATATTATTTCTGAATT
TCAAGAGGTCTTCGAACCTGCCGGAAATTGATTGTTGACTGTGCCGGAAGAGGTTTGCTCTGCTA
GCTCTACTAGGGTTACAGGAATACGGTTGTGAAACAAAGCAATACATACAGTTGTTTCGGTCAGA
GAAGAGAGTAGGTAATGTCAGCTAATCCCCCTAAAGAAAGAGAGAACTGTAGCTAATAAATCAAG
AGAGGGTACGCCGTTAGTGAGTGAGCTCCTTTTGTCACGAAGGTAATCGCTATATACTTGGGTAA
AACTTCGTTAGCAGAGGGCAGACTCTTCCAGCGGCAGCGTTAATAGAATTAGAATTACATAGTCC
ATATTCCCATAGTCCATATTCGTTTGTTCTGTTCTCTTGTTCCTT
Right flanking sequence: Indices 602438 -- 602937
CAAAGTCTATCAACTTCTAGACTTGTAGTTCCAAAGTCTATCAACGAAGCTACTTTGTCCCTCTT
CCTGAGTTGGGAGTTCCTCTCTTCTGTTCGCTAGTTCTTGAGGTAGCTAGTGCCGAGGTTGGAGT
TGATAGCTAGTTGTTAAGGAAAGAAAGCGCATAGGGTTATCATATAGAAATCTTTCTAAGGGAAG
TGAGTTTCGGTAAGGGAAGAGATAAATCTTTTCTCTCGTTTTAGAGCTCTCTATCGAGCTTCTCT
CTGGTTTCGTAGATCTTTCTATACCAGTTGTTCTGGGTTCAACTAGCTTGAAGATAGATAGCCCC
AAGTCCAGAGTTTTCCGGCATGTTTGCGATGAGTTTTCCTGAGGGACAAAGTAACTCGACCATTA
GGGAAGAGGGACAAAGTCCTCGACTATAAAGGAAGAGGTTTGCTTTTCGTTTTCCTGACGTTTGC
TTTGCTCTGGCTAGCTAGAGGTTGGGATCCATCTGTATTGGTTAG
Found at i:602861 original size:29 final size:30
Alignment explanation
Indices: 602803--602865 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
602793 GAGTTTTCCT
* *
602803 GAGGGACAAAGTAACTCGACCATTAGGGAA
1 GAGGGACAAAGTAACTCGACCATAAAGGAA
* *
602833 GAGGGACAAAGT-CCTCGACTATAAAGGAA
1 GAGGGACAAAGTAACTCGACCATAAAGGAA
602862 GAGG
1 GAGG
602866 TTTGCTTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.40, C:0.16, G:0.32, T:0.13
Consensus pattern (30 bp):
GAGGGACAAAGTAACTCGACCATAAAGGAA
Left flanking sequence: Indices 602303 -- 602802
GTTAATAGAATTAGAATTACATAGTCCATATTCCCATAGTCCATATTCGTTTGTTCTGTTCTCTT
GTTCCTTCGTTCCTTTGTCTATCAACGAAGCTACTTTACGTTCCTTCGTCTATCAACAAAGCGAC
TTTACCAAAGTCTATCAACTTCTAGACTTGTAGTTCCAAAGTCTATCAACGAAGCTACTTTGTCC
CTCTTCCTGAGTTGGGAGTTCCTCTCTTCTGTTCGCTAGTTCTTGAGGTAGCTAGTGCCGAGGTT
GGAGTTGATAGCTAGTTGTTAAGGAAAGAAAGCGCATAGGGTTATCATATAGAAATCTTTCTAAG
GGAAGTGAGTTTCGGTAAGGGAAGAGATAAATCTTTTCTCTCGTTTTAGAGCTCTCTATCGAGCT
TCTCTCTGGTTTCGTAGATCTTTCTATACCAGTTGTTCTGGGTTCAACTAGCTTGAAGATAGATA
GCCCCAAGTCCAGAGTTTTCCGGCATGTTTGCGATGAGTTTTCCT
Right flanking sequence: Indices 602866 -- 603365
TTTGCTTTTCGTTTTCCTGACGTTTGCTTTGCTCTGGCTAGCTAGAGGTTGGGATCCATCTGTAT
TGGTTAGGGTAGAGCAGGGTAGAGCTTAGTTTCTTTATTTATCCTAGTTCCTGAAAACCTCTATT
TGGTTAAGTTAACCCGAGAACCTATTGGTTAGGGCTTTATACTTAGCTCCAGGCATCGGCTAAAG
GATATATCTCTGAATAGAATTGCGTAGGTAATATGCATATGTTCTGTCTTTGGTTCCTTCCTAAG
TTAGGAGTACGGGAGGTAGCTACTTGTTAGGGTAAGCTACTATGGTTAGCTAAGGGTTCCCGGCA
GAGGTTTCTCTTAGTCCCGCTAGTAGCTATTAGTTAAGAAAGCTACTTGTTTCATTCTTTTTCTA
TAGGTTTCACGATTCCTAGATCAACAACTGGAGAACTATCCTGAAACTTGAGAACTATCCTGAGG
CTCCAAGAGGTCAGTATTTGTCCATGAAAACTGGGGTTTAAGACA
Found at i:603308 original size:19 final size:19
Alignment explanation
Indices: 603281--603318 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
603271 CTAGATCAAC
603281 AACTGGAGAACTATCCTGA
1 AACTGGAGAACTATCCTGA
*
603300 AACTTGAGAACTATCCTGA
1 AACTGGAGAACTATCCTGA
603319 GGCTCCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (19 bp):
AACTGGAGAACTATCCTGA
Left flanking sequence: Indices 602781 -- 603280
CATGTTTGCGATGAGTTTTCCTGAGGGACAAAGTAACTCGACCATTAGGGAAGAGGGACAAAGTC
CTCGACTATAAAGGAAGAGGTTTGCTTTTCGTTTTCCTGACGTTTGCTTTGCTCTGGCTAGCTAG
AGGTTGGGATCCATCTGTATTGGTTAGGGTAGAGCAGGGTAGAGCTTAGTTTCTTTATTTATCCT
AGTTCCTGAAAACCTCTATTTGGTTAAGTTAACCCGAGAACCTATTGGTTAGGGCTTTATACTTA
GCTCCAGGCATCGGCTAAAGGATATATCTCTGAATAGAATTGCGTAGGTAATATGCATATGTTCT
GTCTTTGGTTCCTTCCTAAGTTAGGAGTACGGGAGGTAGCTACTTGTTAGGGTAAGCTACTATGG
TTAGCTAAGGGTTCCCGGCAGAGGTTTCTCTTAGTCCCGCTAGTAGCTATTAGTTAAGAAAGCTA
CTTGTTTCATTCTTTTTCTATAGGTTTCACGATTCCTAGATCAAC
Right flanking sequence: Indices 603319 -- 603818
GGCTCCAAGAGGTCAGTATTTGTCCATGAAAACTGGGGTTTAAGACACGGCACAAGAAACCAAAC
CAAACCTTGATAGGGATTAATTAGTCCATGAGGATAGCTGCTAGTTATATTCTAATTATAGGAAG
GGGGGTTTGTGCGAGTTAGAGGTAATATGAGGTATAGCTCTTTGTTCCTTTGTTGTACGTTAGAG
GGTTTAGTTCTTACGGTAGTGAGTTTCGTTGCGTTGGGTTTAGGTATATACTTTTGTAATACTGA
GTGCCGTAGAGATCATACGAAGTACGATAGGTGTTAATACAATGAGATAGGCCATATCCGGTAGT
TTTGTTCCTGAGTTCTGTAGTCTATCAACTTCTAGACAAAGTGCCCTTCCCGAGTTGGTAGTTCG
AGGTATAGTATACTTACCAGGGAACTGGGAGTAGATAAAGGATCTATCTTTCAATAGAATTGTCT
AGGTAATATGACCATGTTCTGTTCTTGAGTTCGGAGTTAGATACG
Found at i:603865 original size:28 final size:28
Alignment explanation
Indices: 603834--603889 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
603824 AGTTCTTCCG
603834 CTAGTTAGTTACAATACTTGGGAAAGGA
1 CTAGTTAGTTACAATACTTGGGAAAGGA
603862 CTAGTTAGTTACAATACTTGGGAAAGGA
1 CTAGTTAGTTACAATACTTGGGAAAGGA
603890 TATGAATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
CTAGTTAGTTACAATACTTGGGAAAGGA
Left flanking sequence: Indices 603334 -- 603833
GTATTTGTCCATGAAAACTGGGGTTTAAGACACGGCACAAGAAACCAAACCAAACCTTGATAGGG
ATTAATTAGTCCATGAGGATAGCTGCTAGTTATATTCTAATTATAGGAAGGGGGGTTTGTGCGAG
TTAGAGGTAATATGAGGTATAGCTCTTTGTTCCTTTGTTGTACGTTAGAGGGTTTAGTTCTTACG
GTAGTGAGTTTCGTTGCGTTGGGTTTAGGTATATACTTTTGTAATACTGAGTGCCGTAGAGATCA
TACGAAGTACGATAGGTGTTAATACAATGAGATAGGCCATATCCGGTAGTTTTGTTCCTGAGTTC
TGTAGTCTATCAACTTCTAGACAAAGTGCCCTTCCCGAGTTGGTAGTTCGAGGTATAGTATACTT
ACCAGGGAACTGGGAGTAGATAAAGGATCTATCTTTCAATAGAATTGTCTAGGTAATATGACCAT
GTTCTGTTCTTGAGTTCGGAGTTAGATACGGGATGAGTTCTTCCG
Right flanking sequence: Indices 603890 -- 604389
TATGAATTCACTTAGTCCATATGAGGTTTAGCTCGTTCTTCCCGGAAGAGTTAGGATAGGAAGGT
TTCCCGGCAACAAAGATTGCTCTTAGGAAGGTACGGAGCTAGTTTGAGTCCATAGGAAGTTGAGG
ATAACTGTAGCTAATCAGTTAGTATAGGGTTCCGCTCTTTCTTCTTTGATCTAATAGATGCATAT
AGCATGAGGCCCGAAGGACTCGACCTGCCAGGAGAGGTCGAAAGTGCTCGACTTGCCAGGAGAGG
TTATGAATATCTCGAAAAGAGGTAGAAAGGTGCCCGGGCATCCATACAATCCATTGTTTCATTTA
TTGTACTAAAACCTATAGGTCTTGGTAAGCGTAGAAAAATGTCCCATTTGCAACGAAAAATGACG
TGTTTTAGCAACTTATTTCTATGGAAAGATTTTTGACATAATATAAGATAATAAGAACAAAACTC
TCTGTTTTCTCGGGTTATGTAAGACTTTTACGAAGGAAACGCTTA
Found at i:605560 original size:40 final size:40
Alignment explanation
Indices: 605512--605597 Score: 172
Period size: 40 Copynumber: 2.1 Consensus size: 40
605502 AGTTCCTGGT
605512 TGTTAATCTATTGATCTAGTCCATATGAAGTTGAGTTCTC
1 TGTTAATCTATTGATCTAGTCCATATGAAGTTGAGTTCTC
605552 TGTTAATCTATTGATCTAGTCCATATGAAGTTGAGTTCTC
1 TGTTAATCTATTGATCTAGTCCATATGAAGTTGAGTTCTC
605592 TGTTAA
1 TGTTAA
605598 CTACCTAGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (40 bp):
TGTTAATCTATTGATCTAGTCCATATGAAGTTGAGTTCTC
Left flanking sequence: Indices 605012 -- 605511
TTGTAGCTAATACTAATACTAATACTAATGAGTTACCTCCGTTTTTTGGTTATAAGTTTCAGTTA
GTGGCTATATGGTAATACTGAGTTAGGGTATAACTCTTTGATCTAATAGATGGATAATGGATATA
TTCGTTTGTTACAGAGTCTATCAACTTCTAGAAAAAGTTCCTAAGTTCGGAGTTAGAGGAGAAAT
GACTTCTCTAGGCAGTTTGTTCCTGAGTTCGGAATTAGAGGAGAAAATAAATGAGTTCTTGCGCG
AGTTTCTTTCTAAGCACTAGTTAGTGTATATCCTTAGGAAATGGGAAATGGGTAGTAAGCGCCGT
TTCTATTAGTAACGAAAGCTAGTAGTTTAGTTATACCAAAGGAAGTTGTAGCTAATACTGTAGTT
CTACCTAAGCAAGTAGTTTGTAGCTAATTGAGTGAGCACCTTCGATGGTGATCACGAGGGTAGTG
GCTCTATGTGCCACTAGTCCGTTCTCGAGTTAGTTAGTTCCTGGT
Right flanking sequence: Indices 605598 -- 606097
CTACCTAGTAAGTTTGGAAGGGGAGCTATTAATTCGTTTTGCGTTGGTTTCTCTTTGGGTTCCCT
GGGGCTTAGGTAAGCTATCCGTTTCATTCTATTTCTAGAGGTAATAGGTAATAGGTAACAGGCTT
CCTAGATCAGATGGTAGTTGCTCTATACTTTACTAACTAGTCCATTCTTTTCAGTAAACTAGTAT
AGATAGCTGGTTAATTCATTACATTCTCGGTCAGCTAGTTATGAGGTTTGTTTGTCAGCTAGTTA
TGAGGTTTGTTTGTCAGCTAGGTAAATAGATCAACTAGGTAAGTAGATCAGCTAGGTAGTCCGAT
AGTCCGATAGGTTGTTTCGTAGGGAGTGAGCACCTTCTGTCGTCGACTATAACGGCTAAAGGATA
TATTTTGAAATAGAATGACTTAGTCCATATTGGTTAGTTCTATTCTTTTGTTCCTTTGTCTATCT
TAGAAGCTACTTTGTTCCTGAGTGAGTTCCTTGGGTTAGCTAAGC
Found at i:605854 original size:24 final size:24
Alignment explanation
Indices: 605822--605878 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
605812 TACATTCTCG
605822 GTCAGCTAGTTATGAGGTTTGTTT
1 GTCAGCTAGTTATGAGGTTTGTTT
605846 GTCAGCTAGTTATGAGGTTTGTTT
1 GTCAGCTAGTTATGAGGTTTGTTT
605870 GTCAGCTAG
1 GTCAGCTAG
605879 GTAAATAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.18, C:0.11, G:0.30, T:0.42
Consensus pattern (24 bp):
GTCAGCTAGTTATGAGGTTTGTTT
Left flanking sequence: Indices 605322 -- 605821
GGTAGTAAGCGCCGTTTCTATTAGTAACGAAAGCTAGTAGTTTAGTTATACCAAAGGAAGTTGTA
GCTAATACTGTAGTTCTACCTAAGCAAGTAGTTTGTAGCTAATTGAGTGAGCACCTTCGATGGTG
ATCACGAGGGTAGTGGCTCTATGTGCCACTAGTCCGTTCTCGAGTTAGTTAGTTCCTGGTTGTTA
ATCTATTGATCTAGTCCATATGAAGTTGAGTTCTCTGTTAATCTATTGATCTAGTCCATATGAAG
TTGAGTTCTCTGTTAACTACCTAGTAAGTTTGGAAGGGGAGCTATTAATTCGTTTTGCGTTGGTT
TCTCTTTGGGTTCCCTGGGGCTTAGGTAAGCTATCCGTTTCATTCTATTTCTAGAGGTAATAGGT
AATAGGTAACAGGCTTCCTAGATCAGATGGTAGTTGCTCTATACTTTACTAACTAGTCCATTCTT
TTCAGTAAACTAGTATAGATAGCTGGTTAATTCATTACATTCTCG
Right flanking sequence: Indices 605879 -- 606378
GTAAATAGATCAACTAGGTAAGTAGATCAGCTAGGTAGTCCGATAGTCCGATAGGTTGTTTCGTA
GGGAGTGAGCACCTTCTGTCGTCGACTATAACGGCTAAAGGATATATTTTGAAATAGAATGACTT
AGTCCATATTGGTTAGTTCTATTCTTTTGTTCCTTTGTCTATCTTAGAAGCTACTTTGTTCCTGA
GTGAGTTCCTTGGGTTAGCTAAGCGTTGGGGTACACTAGGGTTGGTTCCCGGCAGAGGTTTGTCT
TCGTCCGGTAATCAAAATCTCTAGTATAGGATAGATGAGAATACCTCTCTAATAATGAGTTGCGG
GTATAGTAAGAATACCTGTACTGTAGCTAATGGATATGTTCCATATGGGTAAGTTTCTTTGTTCC
TGATTAGATTAGATTAGAGGAGAAATGACTTTCTCTATTCTCTAAGTAGTTTGTTTCGTTGCACT
AGGTAGTTAGTTTCGTTCCACTAGTTAGTATAAGTATACAACTCC
Found at i:605895 original size:17 final size:17
Alignment explanation
Indices: 605875--605915 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
605865 TGTTTGTCAG
605875 CTAGGTAAATAGATCAA
1 CTAGGTAAATAGATCAA
* *
605892 CTAGGTAAGTAGATCAG
1 CTAGGTAAATAGATCAA
605909 CTAGGTA
1 CTAGGTA
605916 GTCCGATAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
CTAGGTAAATAGATCAA
Left flanking sequence: Indices 605375 -- 605874
AAGGAAGTTGTAGCTAATACTGTAGTTCTACCTAAGCAAGTAGTTTGTAGCTAATTGAGTGAGCA
CCTTCGATGGTGATCACGAGGGTAGTGGCTCTATGTGCCACTAGTCCGTTCTCGAGTTAGTTAGT
TCCTGGTTGTTAATCTATTGATCTAGTCCATATGAAGTTGAGTTCTCTGTTAATCTATTGATCTA
GTCCATATGAAGTTGAGTTCTCTGTTAACTACCTAGTAAGTTTGGAAGGGGAGCTATTAATTCGT
TTTGCGTTGGTTTCTCTTTGGGTTCCCTGGGGCTTAGGTAAGCTATCCGTTTCATTCTATTTCTA
GAGGTAATAGGTAATAGGTAACAGGCTTCCTAGATCAGATGGTAGTTGCTCTATACTTTACTAAC
TAGTCCATTCTTTTCAGTAAACTAGTATAGATAGCTGGTTAATTCATTACATTCTCGGTCAGCTA
GTTATGAGGTTTGTTTGTCAGCTAGTTATGAGGTTTGTTTGTCAG
Right flanking sequence: Indices 605916 -- 606415
GTCCGATAGTCCGATAGGTTGTTTCGTAGGGAGTGAGCACCTTCTGTCGTCGACTATAACGGCTA
AAGGATATATTTTGAAATAGAATGACTTAGTCCATATTGGTTAGTTCTATTCTTTTGTTCCTTTG
TCTATCTTAGAAGCTACTTTGTTCCTGAGTGAGTTCCTTGGGTTAGCTAAGCGTTGGGGTACACT
AGGGTTGGTTCCCGGCAGAGGTTTGTCTTCGTCCGGTAATCAAAATCTCTAGTATAGGATAGATG
AGAATACCTCTCTAATAATGAGTTGCGGGTATAGTAAGAATACCTGTACTGTAGCTAATGGATAT
GTTCCATATGGGTAAGTTTCTTTGTTCCTGATTAGATTAGATTAGAGGAGAAATGACTTTCTCTA
TTCTCTAAGTAGTTTGTTTCGTTGCACTAGGTAGTTAGTTTCGTTCCACTAGTTAGTATAAGTAT
ACAACTCCAATGGTTCTCAAATGGTTCTAAAAAGGTTCTAAAATG
Found at i:606339 original size:22 final size:22
Alignment explanation
Indices: 606314--606362 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
606304 TATTCTCTAA
* *
606314 GTAGTTTGTTTCGTTGCACTAG
1 GTAGTTAGTTTCGTTCCACTAG
606336 GTAGTTAGTTTCGTTCCACTAG
1 GTAGTTAGTTTCGTTCCACTAG
*
606358 TTAGT
1 GTAGT
606363 ATAAGTATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.16, C:0.14, G:0.24, T:0.45
Consensus pattern (22 bp):
GTAGTTAGTTTCGTTCCACTAG
Left flanking sequence: Indices 605814 -- 606313
CATTCTCGGTCAGCTAGTTATGAGGTTTGTTTGTCAGCTAGTTATGAGGTTTGTTTGTCAGCTAG
GTAAATAGATCAACTAGGTAAGTAGATCAGCTAGGTAGTCCGATAGTCCGATAGGTTGTTTCGTA
GGGAGTGAGCACCTTCTGTCGTCGACTATAACGGCTAAAGGATATATTTTGAAATAGAATGACTT
AGTCCATATTGGTTAGTTCTATTCTTTTGTTCCTTTGTCTATCTTAGAAGCTACTTTGTTCCTGA
GTGAGTTCCTTGGGTTAGCTAAGCGTTGGGGTACACTAGGGTTGGTTCCCGGCAGAGGTTTGTCT
TCGTCCGGTAATCAAAATCTCTAGTATAGGATAGATGAGAATACCTCTCTAATAATGAGTTGCGG
GTATAGTAAGAATACCTGTACTGTAGCTAATGGATATGTTCCATATGGGTAAGTTTCTTTGTTCC
TGATTAGATTAGATTAGAGGAGAAATGACTTTCTCTATTCTCTAA
Right flanking sequence: Indices 606363 -- 606862
ATAAGTATACAACTCCAATGGTTCTCAAATGGTTCTAAAAAGGTTCTAAAATGGTTCTTATCTTA
AATGGTTAGTTAGAACGGTTAGTTATAATACTTAGGTAATGATTAGGAAATGGTTAGTTAAGATA
CTTAGGTAATGATTAGGAAATGGTGCCGTAAGGAAATGTCTCGAGTATGTAGGGTAACTGTCAAC
TAGTTATGAGGTTTCTTTGTCAGCTAGTTATGAGGCAAGGTAGGTCACTCAACTAGTCCAATAGA
TGGGTAACTCGAGAGATAGGTAACTCAACTCGGTATGTCAACTAGTCAATCAATATATCCTGTTG
TTCCGATCAGCTAGTCAGCTAACTAACAAACCTAGGTGTATTGGATTGTATTGGTGTAGCTCTAG
GAACGTAGTAACGTAGTAACTCGACTGTAAGGAGAGGAATGAGGGAGGGAATATAGAGCCAAAGT
TAACGACGTGCGGAGTGCTGCTTGGCCTAAGCGAACTGGACGACT
Found at i:606395 original size:11 final size:11
Alignment explanation
Indices: 606379--606420 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
606369 ATACAACTCC
*
606379 AATGGTTCTCA
1 AATGGTTCTAA
606390 AATGGTTCTAA
1 AATGGTTCTAA
*
606401 AAAGGTTCTAA
1 AATGGTTCTAA
606412 AATGGTTCT
1 AATGGTTCT
606421 TATCTTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (11 bp):
AATGGTTCTAA
Left flanking sequence: Indices 605879 -- 606378
GTAAATAGATCAACTAGGTAAGTAGATCAGCTAGGTAGTCCGATAGTCCGATAGGTTGTTTCGTA
GGGAGTGAGCACCTTCTGTCGTCGACTATAACGGCTAAAGGATATATTTTGAAATAGAATGACTT
AGTCCATATTGGTTAGTTCTATTCTTTTGTTCCTTTGTCTATCTTAGAAGCTACTTTGTTCCTGA
GTGAGTTCCTTGGGTTAGCTAAGCGTTGGGGTACACTAGGGTTGGTTCCCGGCAGAGGTTTGTCT
TCGTCCGGTAATCAAAATCTCTAGTATAGGATAGATGAGAATACCTCTCTAATAATGAGTTGCGG
GTATAGTAAGAATACCTGTACTGTAGCTAATGGATATGTTCCATATGGGTAAGTTTCTTTGTTCC
TGATTAGATTAGATTAGAGGAGAAATGACTTTCTCTATTCTCTAAGTAGTTTGTTTCGTTGCACT
AGGTAGTTAGTTTCGTTCCACTAGTTAGTATAAGTATACAACTCC
Right flanking sequence: Indices 606421 -- 606920
TATCTTAAATGGTTAGTTAGAACGGTTAGTTATAATACTTAGGTAATGATTAGGAAATGGTTAGT
TAAGATACTTAGGTAATGATTAGGAAATGGTGCCGTAAGGAAATGTCTCGAGTATGTAGGGTAAC
TGTCAACTAGTTATGAGGTTTCTTTGTCAGCTAGTTATGAGGCAAGGTAGGTCACTCAACTAGTC
CAATAGATGGGTAACTCGAGAGATAGGTAACTCAACTCGGTATGTCAACTAGTCAATCAATATAT
CCTGTTGTTCCGATCAGCTAGTCAGCTAACTAACAAACCTAGGTGTATTGGATTGTATTGGTGTA
GCTCTAGGAACGTAGTAACGTAGTAACTCGACTGTAAGGAGAGGAATGAGGGAGGGAATATAGAG
CCAAAGTTAACGACGTGCGGAGTGCTGCTTGGCCTAAGCGAACTGGACGACTGAATTGAATGAAG
TTAGAGTGGCTTCTGGATTGGGTAATCTTTGAATGAATAATCGTA
Found at i:606494 original size:35 final size:35
Alignment explanation
Indices: 606444--606516 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
606434 TAGTTAGAAC
606444 GGTTAGTTATAATACTTAGGTAATGATTAGGAAAT
1 GGTTAGTTATAATACTTAGGTAATGATTAGGAAAT
606479 GGTTAGTTA-AGATACTTAGGTAATGATTAGGAAAT
1 GGTTAGTTATA-ATACTTAGGTAATGATTAGGAAAT
606514 GGT
1 GGT
606517 GCCGTAAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 1 0.03
35 36 0.97
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.36
Consensus pattern (35 bp):
GGTTAGTTATAATACTTAGGTAATGATTAGGAAAT
Left flanking sequence: Indices 605944 -- 606443
GGGAGTGAGCACCTTCTGTCGTCGACTATAACGGCTAAAGGATATATTTTGAAATAGAATGACTT
AGTCCATATTGGTTAGTTCTATTCTTTTGTTCCTTTGTCTATCTTAGAAGCTACTTTGTTCCTGA
GTGAGTTCCTTGGGTTAGCTAAGCGTTGGGGTACACTAGGGTTGGTTCCCGGCAGAGGTTTGTCT
TCGTCCGGTAATCAAAATCTCTAGTATAGGATAGATGAGAATACCTCTCTAATAATGAGTTGCGG
GTATAGTAAGAATACCTGTACTGTAGCTAATGGATATGTTCCATATGGGTAAGTTTCTTTGTTCC
TGATTAGATTAGATTAGAGGAGAAATGACTTTCTCTATTCTCTAAGTAGTTTGTTTCGTTGCACT
AGGTAGTTAGTTTCGTTCCACTAGTTAGTATAAGTATACAACTCCAATGGTTCTCAAATGGTTCT
AAAAAGGTTCTAAAATGGTTCTTATCTTAAATGGTTAGTTAGAAC
Right flanking sequence: Indices 606517 -- 607016
GCCGTAAGGAAATGTCTCGAGTATGTAGGGTAACTGTCAACTAGTTATGAGGTTTCTTTGTCAGC
TAGTTATGAGGCAAGGTAGGTCACTCAACTAGTCCAATAGATGGGTAACTCGAGAGATAGGTAAC
TCAACTCGGTATGTCAACTAGTCAATCAATATATCCTGTTGTTCCGATCAGCTAGTCAGCTAACT
AACAAACCTAGGTGTATTGGATTGTATTGGTGTAGCTCTAGGAACGTAGTAACGTAGTAACTCGA
CTGTAAGGAGAGGAATGAGGGAGGGAATATAGAGCCAAAGTTAACGACGTGCGGAGTGCTGCTTG
GCCTAAGCGAACTGGACGACTGAATTGAATGAAGTTAGAGTGGCTTCTGGATTGGGTAATCTTTG
AATGAATAATCGTAATAGAATCTCTCTGTACTAAGTTCTAATGGATACGCCGTTCATTCCCTTTC
CTTTACTACGAGTAAGGTGTAATGCATAAGAGTACATCTACGACT
Found at i:607688 original size:10 final size:9
Alignment explanation
Indices: 607675--607735 Score: 56
Period size: 9 Copynumber: 6.7 Consensus size: 9
607665 CGTTCCCTTG
607675 GTATAGGATA
1 GTATA-GATA
607685 GTATAGATA
1 GTATAGATA
607694 G-ATAGATA
1 GTATAGATA
607702 GTATA-ACCTA
1 GTATAGA--TA
607712 GTATAGATA
1 GTATAGATA
607721 G-ATAGGATA
1 GTATA-GATA
*
607730 GGATAG
1 GTATAG
607736 GAGAGTTACG
Statistics
Matches: 45, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
8 12 0.27
9 17 0.38
10 15 0.33
11 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.28
Consensus pattern (9 bp):
GTATAGATA
Left flanking sequence: Indices 607175 -- 607674
TTGTTCTTGTTTCTGCATTGGTATGGTAGGTTTCTCGATTGGATAGGTGAGTGGGAAACGATATT
TATCAGTCAACTAGTTAGTAGAGGTAATAAATAGGTAGTATTCTGCTAGTATAGGTAGTTGCTAG
TATAGATGGGTAGTTAGCTAGCTAGATAGTACGTCCGTTAGATAGATAGATGGTAATGAATGATA
GTAGGAATAGCTAAAGCTAAGCTAGTTCCAACGTACGTTTCTACTAGTTTTCATAAGCACTAGTT
AGTATACAACTACAATGGTTAAGCACTAGTTACTATACAACGGTAATGGTGCCGGAAATGGTTCT
CAAATGGTTAGTAAGGTTTAGCAATGTATTGCGCGGCGTATTAGTATTACAGGTGGTAAGGTAAC
TGTCAGCTAATCAGGTAGTCCGTTCCTTTGTCAGCTAGTCAGCTAAGCTAGTCAACTAGTTCCCT
TGCCTTGGTATAGATAGTATAACCTAGTTCCGTTCCGTTCCCTTG
Right flanking sequence: Indices 607736 -- 608235
GAGAGTTACGATAGTCTGTATAACCTAGGTAATTGATTGTATAGATGATCGTAAACGAGGTAATG
AGTAAGATAAGGGTGGTAAGTTACGTGCATAGATAGAAAAGCTTATACTCGAATACCAAAGTTCA
TGGTAAATGGTAAACTCACTGGAAGGACATCCTCCTAGATTAGAGAAAGATAGTTGTAATGCATC
AGCGGTACCAAACAAATAGCTTCTCCGGTTCAGAACTAATTCCCCAATGGTATCTTTGTTTGTTT
CGGTATCTTTGTTTGTTGTTGATAGGTTTCTCGATTGGATAGCTTCTTCCTTTATCTTTTCAGTA
GTAAACTAGTAACTAGTCCGTAGTTTTCATTCAGTAAACTAGTATAGTACGTCCGGTAGCTAGGA
TTACAGGAATGTTGTTCAACAAAGCAAGTGAATCCTGTTGTTGACGGTCAGATACTATTACAGGA
ATGTAGTTCAACAAAGCTAGTCAATCCAGTTGTTCCCGGAAAGGT
Found at i:608931 original size:37 final size:37
Alignment explanation
Indices: 608851--608958 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
608841 GGTAAGCAGC
* * * **
608851 TAGTATAGATAATACCTCTCTAATAGTTTCGTTTAGTA
1 TAGTATAGATAATAGCTCTGTAATA-ATGAGTTTAGTA
608889 TAGTATAGATAATAGCTCTGTAATAATGAGTTTAGTA
1 TAGTATAGATAATAGCTCTGTAATAATGAGTTTAGTA
608926 TAGTATAGATAATAGCTCTGTAATAATGAGTTT
1 TAGTATAGATAATAGCTCTGTAATAATGAGTTT
608959 CGGGTATAGG
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 42 0.65
38 23 0.35
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (37 bp):
TAGTATAGATAATAGCTCTGTAATAATGAGTTTAGTA
Left flanking sequence: Indices 608351 -- 608850
ATATTCGTTAGTAGAGAGAATACTTTGTTTGCTAGCTCTCTTCTCTAATAGAATGAGATAGTCCA
TATGAGTGAGTAGAGAGAATACTTTGTTCATCCGTTTGGAGTAAGAGGTTTGAGTTCTCTAGGTA
GTGAGTTTCTAAGGTTTCGGGTATTGACTTAAGGTAATATTCGTTGTAGCTCTTTGTTCCCTACT
GAGTTTCTAAGGGTTGCCTTTTGTTTCTCTTAGTACGGTGATAGCTAGTTAGAGGTAATATAATA
TCTAGTTGGATGGAGGTAATAGCGGCGTTATAGTAAGTGGTAATATCTAGTTATAGGTAATAGTT
GTCATACTGGTAAGCCTTACTATCTTGTATCGAGGAGACTGCAGCTAATAAAGAAAGAGAAGGAA
TGTCAGCTACAGTTAGTTACTATACTTAGTCCATGGTTATAAAATAATGGTTATACAGGAAGCGG
CGTCAACAACGGAGTACTAGGTTTTTCTTTTCCTTGGTAAGCAGC
Right flanking sequence: Indices 608959 -- 609458
CGGGTATAGGAATACCTGTAATGGTCCATATTGGGTTGTTCCTTTGTTCATCCTAAGATAGATAA
GAGGTCCTAGTTCTTGCCGGGAGTTTGTTTATAAGTAGTTGGTTTCGTTGTCGTTTCTTTCGTTG
GAAAAGGGTATTGACAACGGTAATATACGGTAATATGAGGTTTAGCTTAGGTAAGATGAGGTATA
GCTCTTTCTTCTGTAGTTCGGAGTTAGAGGGTTTAGAGTTCTATAGGTAATTGATTTCGTTGCAC
TAGTTAGTTACAATACAACGGTAATGGTGCCGGAAATGGTTACTAAATGCTTACTAAGGCAATGT
ATTGCGCGAGTATGGAGGGTAAGGGTAAGGTAACTGTCAGCGGCAGCTTCTATTCGTTGATTGAT
CATACACTGGGACAATGCAGCGGCAGCTTCTAATATTTCCAATACCTGTAGCTAACATTAACAGG
AAGCGGCGTCAACAACGGAAAGTACTCCCTAGGTTTTGCTTTGCT
Found at i:609141 original size:21 final size:21
Alignment explanation
Indices: 609117--609156 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
609107 GGTAATATAC
* *
609117 GGTAATATGAGGTTTAGCTTA
1 GGTAAGATGAGGTATAGCTTA
609138 GGTAAGATGAGGTATAGCT
1 GGTAAGATGAGGTATAGCT
609157 CTTTCTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.33, T:0.33
Consensus pattern (21 bp):
GGTAAGATGAGGTATAGCTTA
Left flanking sequence: Indices 608617 -- 609116
TGGATGGAGGTAATAGCGGCGTTATAGTAAGTGGTAATATCTAGTTATAGGTAATAGTTGTCATA
CTGGTAAGCCTTACTATCTTGTATCGAGGAGACTGCAGCTAATAAAGAAAGAGAAGGAATGTCAG
CTACAGTTAGTTACTATACTTAGTCCATGGTTATAAAATAATGGTTATACAGGAAGCGGCGTCAA
CAACGGAGTACTAGGTTTTTCTTTTCCTTGGTAAGCAGCTAGTATAGATAATACCTCTCTAATAG
TTTCGTTTAGTATAGTATAGATAATAGCTCTGTAATAATGAGTTTAGTATAGTATAGATAATAGC
TCTGTAATAATGAGTTTCGGGTATAGGAATACCTGTAATGGTCCATATTGGGTTGTTCCTTTGTT
CATCCTAAGATAGATAAGAGGTCCTAGTTCTTGCCGGGAGTTTGTTTATAAGTAGTTGGTTTCGT
TGTCGTTTCTTTCGTTGGAAAAGGGTATTGACAACGGTAATATAC
Right flanking sequence: Indices 609157 -- 609656
CTTTCTTCTGTAGTTCGGAGTTAGAGGGTTTAGAGTTCTATAGGTAATTGATTTCGTTGCACTAG
TTAGTTACAATACAACGGTAATGGTGCCGGAAATGGTTACTAAATGCTTACTAAGGCAATGTATT
GCGCGAGTATGGAGGGTAAGGGTAAGGTAACTGTCAGCGGCAGCTTCTATTCGTTGATTGATCAT
ACACTGGGACAATGCAGCGGCAGCTTCTAATATTTCCAATACCTGTAGCTAACATTAACAGGAAG
CGGCGTCAACAACGGAAAGTACTCCCTAGGTTTTGCTTTGCTGGCACGGCAGCTTTTCCTTGGTA
AGCCAGGAGAGGTAATAGCAAGTGATAGTTAGTGTATATACAACGATAATGAATGGTCCGTTTCG
TTGTAGAAAGTTGTAAGGAAAGTAGAAAGTTGTAAGGTTTGCAGTAGCTAGTAAGGATAGGGTTA
CAGGAATACGGGTGTTCAATACAGGAATACGGTTGTTCAAGGAAT
Found at i:609636 original size:21 final size:21
Alignment explanation
Indices: 609610--609676 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
609600 AGGATAGGGT
*
609610 TACAGGAATACGGGTGTTCAA
1 TACAGGAATACGGTTGTTCAA
609631 TACAGGAATACGGTTGTTC--
1 TACAGGAATACGGTTGTTCAA
*
609650 -A-AGGAATAAGGTTGTTCAA
1 TACAGGAATACGGTTGTTCAA
609669 TACAGGAA
1 TACAGGAA
609677 GTTGTGAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 15 0.38
18 1 0.03
20 1 0.03
21 23 0.57
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (21 bp):
TACAGGAATACGGTTGTTCAA
Left flanking sequence: Indices 609110 -- 609609
AATATACGGTAATATGAGGTTTAGCTTAGGTAAGATGAGGTATAGCTCTTTCTTCTGTAGTTCGG
AGTTAGAGGGTTTAGAGTTCTATAGGTAATTGATTTCGTTGCACTAGTTAGTTACAATACAACGG
TAATGGTGCCGGAAATGGTTACTAAATGCTTACTAAGGCAATGTATTGCGCGAGTATGGAGGGTA
AGGGTAAGGTAACTGTCAGCGGCAGCTTCTATTCGTTGATTGATCATACACTGGGACAATGCAGC
GGCAGCTTCTAATATTTCCAATACCTGTAGCTAACATTAACAGGAAGCGGCGTCAACAACGGAAA
GTACTCCCTAGGTTTTGCTTTGCTGGCACGGCAGCTTTTCCTTGGTAAGCCAGGAGAGGTAATAG
CAAGTGATAGTTAGTGTATATACAACGATAATGAATGGTCCGTTTCGTTGTAGAAAGTTGTAAGG
AAAGTAGAAAGTTGTAAGGTTTGCAGTAGCTAGTAAGGATAGGGT
Right flanking sequence: Indices 609677 -- 610176
GTTGTGAAACAAAGCAAGTCAATCTAGTTGTTGTTGTTTCCGGTCAGGTGGTAATGGGATGTAAC
CTGCAGCTAATCTTTCTATATATAGAATATCTCATTCTAATGATAATGTCAGCTACCTCATGATA
ATGTCAGCTACTCAACCAAGGAAGTCAACCAAGCTAGTGAATTCAATTGTTCAACAAAGGAAGTT
CTAGTTAATGAGTTACCTCCTTTTTTTGGTTAGAAGCCAGTATATGGTAATACTGAGTTAGTCTA
GGGTTCCGCTCTTTTCTCTAATAGATGGATATAGGTAATATCAGTTTGTTACAAAGTATATCTTA
GAAGCTACAAAGGTCCTTCGTATATCTTAGAAGCTACAAAGAAAGGTCCAGAGTCTATCAACGAA
GCTACTTCCTGAGTTCGGAGTTAGAGGGTGATAGTTCTTGCCGCTAGTTTCTTTCTAAGTACTAG
TTACGTAAGTAATGGTTAGGTAATGGGTAGCTTCTAAGTAATAAG
Found at i:609656 original size:17 final size:17
Alignment explanation
Indices: 609634--609668 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
609624 TGTTCAATAC
*
609634 AGGAATACGGTTGTTCA
1 AGGAATAAGGTTGTTCA
609651 AGGAATAAGGTTGTTCA
1 AGGAATAAGGTTGTTCA
609668 A
1 A
609669 TACAGGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (17 bp):
AGGAATAAGGTTGTTCA
Left flanking sequence: Indices 609134 -- 609633
CTTAGGTAAGATGAGGTATAGCTCTTTCTTCTGTAGTTCGGAGTTAGAGGGTTTAGAGTTCTATA
GGTAATTGATTTCGTTGCACTAGTTAGTTACAATACAACGGTAATGGTGCCGGAAATGGTTACTA
AATGCTTACTAAGGCAATGTATTGCGCGAGTATGGAGGGTAAGGGTAAGGTAACTGTCAGCGGCA
GCTTCTATTCGTTGATTGATCATACACTGGGACAATGCAGCGGCAGCTTCTAATATTTCCAATAC
CTGTAGCTAACATTAACAGGAAGCGGCGTCAACAACGGAAAGTACTCCCTAGGTTTTGCTTTGCT
GGCACGGCAGCTTTTCCTTGGTAAGCCAGGAGAGGTAATAGCAAGTGATAGTTAGTGTATATACA
ACGATAATGAATGGTCCGTTTCGTTGTAGAAAGTTGTAAGGAAAGTAGAAAGTTGTAAGGTTTGC
AGTAGCTAGTAAGGATAGGGTTACAGGAATACGGGTGTTCAATAC
Right flanking sequence: Indices 609669 -- 610168
TACAGGAAGTTGTGAAACAAAGCAAGTCAATCTAGTTGTTGTTGTTTCCGGTCAGGTGGTAATGG
GATGTAACCTGCAGCTAATCTTTCTATATATAGAATATCTCATTCTAATGATAATGTCAGCTACC
TCATGATAATGTCAGCTACTCAACCAAGGAAGTCAACCAAGCTAGTGAATTCAATTGTTCAACAA
AGGAAGTTCTAGTTAATGAGTTACCTCCTTTTTTTGGTTAGAAGCCAGTATATGGTAATACTGAG
TTAGTCTAGGGTTCCGCTCTTTTCTCTAATAGATGGATATAGGTAATATCAGTTTGTTACAAAGT
ATATCTTAGAAGCTACAAAGGTCCTTCGTATATCTTAGAAGCTACAAAGAAAGGTCCAGAGTCTA
TCAACGAAGCTACTTCCTGAGTTCGGAGTTAGAGGGTGATAGTTCTTGCCGCTAGTTTCTTTCTA
AGTACTAGTTACGTAAGTAATGGTTAGGTAATGGGTAGCTTCTAA
Found at i:610812 original size:21 final size:21
Alignment explanation
Indices: 610786--610842 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
610776 GATAGCGGCA
610786 GCGTTAATAGAATGAGATTAG
1 GCGTTAATAGAATGAGATTAG
610807 GCGTTAATAGAATGAGATTAG
1 GCGTTAATAGAATGAGATTAG
610828 GCGTTAATAGAATGA
1 GCGTTAATAGAATGA
610843 TCTAGTCCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.39, C:0.05, G:0.28, T:0.28
Consensus pattern (21 bp):
GCGTTAATAGAATGAGATTAG
Left flanking sequence: Indices 610286 -- 610785
AACAAAGGAAGCTAACACTAACATAACACAGTTGTGAAACAAAGCAAGGAAAGAAAGTAATGCGG
GTTAACAGTTAGTTGTTCACAGTAGTTTGCGCTAAGGAAGTCGTTTTAGCTAAGAATAAGAAAGT
GAGTTGTTTCTAGCTAAGTAAAGGGTAGTGGCTCTATGTGCCGTACAGGGTTGCGCTCTCGACAA
AGTGAGTTCCTGGTTGTTAATCTATTGATCTAGGTAATACGAAGTGAGGTTTAGCTCTATGTGCC
ACTAGATAGTTATACAGGGGAGCTATTAGTTTTGCGTTGTCCATCATGGGGTTTTCCTAATCCTA
ATCCTAAGGTTTGTTTTCTCTTAGTCCGGTTCTAGCGCATATCTATTAGTAACGAAAGCTACTAG
TTATACCAAAGCAAGTTGTAGCTAACAAACAAGTGAGCGCCTTTTGGTTAGTAAGGTAGTCCCTA
TATGTATATACTGAGTTTAGGAGAGGGCAGACGAAGATAGCGGCA
Right flanking sequence: Indices 610843 -- 611342
TCTAGTCCATATTCGTTTGTTCCAAAGTCTATCAACGAAGCGACTTTGTTCCAGAGTCTAGCAAC
TTATATACTTTGTTCCTTCGTTCCTTCGTCTATCAACGAAGCGACTTGTAGTTCCTGATTAGAGG
ATAAATTAGTTCTCTATTCTCTAGCTAGTTTCTTTCGTTCTACTAGGTAGTTAATATACTGCGGA
AATGGTTAAGCACTAGTTAGTGTATATACAACTACAATGGTTCGTTTTTCAGTAGTAAGTCCAGC
TATTCGTTTTTCTAAGTAAGTCCAGCTAGCTACTAGCCCACTCAGATAGTTAGTTATAGGTAATA
GCAAGTTCTAGTTATAGGTGATAGCTAGTTATAGGTAATAGAATAGGAAGTAGCTAAAGATTGAG
GATAACTGTAGCTAATGAGTGAGGATAACTGTAGCTAATGAGTTACCTCCTTTTGTCACGAGCGT
AGCTAATAGGCTAGTTTAGTTCCTGCCGGTAGTTTCTACTAGTTC
Found at i:611120 original size:26 final size:26
Alignment explanation
Indices: 611078--611130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
611068 ACTACAATGG
611078 TTCGTTTTTCAGTAGTAAGTCCAGCTA
1 TTCGTTTTTCAG-AGTAAGTCCAGCTA
611105 TTCGTTTTTCTA-AGTAAGTCCAGCTA
1 TTCGTTTTTC-AGAGTAAGTCCAGCTA
611131 GCTACTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 14 0.56
27 10 0.40
28 1 0.04
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.42
Consensus pattern (26 bp):
TTCGTTTTTCAGAGTAAGTCCAGCTA
Left flanking sequence: Indices 610578 -- 611077
TGCGTTGTCCATCATGGGGTTTTCCTAATCCTAATCCTAAGGTTTGTTTTCTCTTAGTCCGGTTC
TAGCGCATATCTATTAGTAACGAAAGCTACTAGTTATACCAAAGCAAGTTGTAGCTAACAAACAA
GTGAGCGCCTTTTGGTTAGTAAGGTAGTCCCTATATGTATATACTGAGTTTAGGAGAGGGCAGAC
GAAGATAGCGGCAGCGTTAATAGAATGAGATTAGGCGTTAATAGAATGAGATTAGGCGTTAATAG
AATGATCTAGTCCATATTCGTTTGTTCCAAAGTCTATCAACGAAGCGACTTTGTTCCAGAGTCTA
GCAACTTATATACTTTGTTCCTTCGTTCCTTCGTCTATCAACGAAGCGACTTGTAGTTCCTGATT
AGAGGATAAATTAGTTCTCTATTCTCTAGCTAGTTTCTTTCGTTCTACTAGGTAGTTAATATACT
GCGGAAATGGTTAAGCACTAGTTAGTGTATATACAACTACAATGG
Right flanking sequence: Indices 611131 -- 611630
GCTACTAGCCCACTCAGATAGTTAGTTATAGGTAATAGCAAGTTCTAGTTATAGGTGATAGCTAG
TTATAGGTAATAGAATAGGAAGTAGCTAAAGATTGAGGATAACTGTAGCTAATGAGTGAGGATAA
CTGTAGCTAATGAGTTACCTCCTTTTGTCACGAGCGTAGCTAATAGGCTAGTTTAGTTCCTGCCG
GTAGTTTCTACTAGTTCATAAGCATTTGTTAGTTAAGATACTGCGGGAATGGTTCGTTTTGCATA
CTGCTAGTTAGAGGTTCTTTTTCAGTAGTACTGCTAGTGCCGAGAGAGAGGTAGAGGTGAGTTTT
CTAGATAGTTACGAAAGCTAAGTTGTTGAATGAGATTTCTATAGGTTGTTAGATTCCTAGATCAA
CAACTGGTACGAAGTCCTGAGGTATAGAGCAGAGAAGGCAGTATTTGTCCTAGATGGGGTTTAAG
CCACTATTCAATTGGGAGAAGTAGGTAAACAGTAATGAGGTGCTC
Found at i:611179 original size:23 final size:23
Alignment explanation
Indices: 611153--611197 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
611143 CTCAGATAGT
611153 TAGTTATAGGTAATAGCAAGTTC
1 TAGTTATAGGTAATAGCAAGTTC
* *
611176 TAGTTATAGGTGATAGCTAGTT
1 TAGTTATAGGTAATAGCAAGTT
611198 ATAGGTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (23 bp):
TAGTTATAGGTAATAGCAAGTTC
Left flanking sequence: Indices 610653 -- 611152
CTATTAGTAACGAAAGCTACTAGTTATACCAAAGCAAGTTGTAGCTAACAAACAAGTGAGCGCCT
TTTGGTTAGTAAGGTAGTCCCTATATGTATATACTGAGTTTAGGAGAGGGCAGACGAAGATAGCG
GCAGCGTTAATAGAATGAGATTAGGCGTTAATAGAATGAGATTAGGCGTTAATAGAATGATCTAG
TCCATATTCGTTTGTTCCAAAGTCTATCAACGAAGCGACTTTGTTCCAGAGTCTAGCAACTTATA
TACTTTGTTCCTTCGTTCCTTCGTCTATCAACGAAGCGACTTGTAGTTCCTGATTAGAGGATAAA
TTAGTTCTCTATTCTCTAGCTAGTTTCTTTCGTTCTACTAGGTAGTTAATATACTGCGGAAATGG
TTAAGCACTAGTTAGTGTATATACAACTACAATGGTTCGTTTTTCAGTAGTAAGTCCAGCTATTC
GTTTTTCTAAGTAAGTCCAGCTAGCTACTAGCCCACTCAGATAGT
Right flanking sequence: Indices 611198 -- 611697
ATAGGTAATAGAATAGGAAGTAGCTAAAGATTGAGGATAACTGTAGCTAATGAGTGAGGATAACT
GTAGCTAATGAGTTACCTCCTTTTGTCACGAGCGTAGCTAATAGGCTAGTTTAGTTCCTGCCGGT
AGTTTCTACTAGTTCATAAGCATTTGTTAGTTAAGATACTGCGGGAATGGTTCGTTTTGCATACT
GCTAGTTAGAGGTTCTTTTTCAGTAGTACTGCTAGTGCCGAGAGAGAGGTAGAGGTGAGTTTTCT
AGATAGTTACGAAAGCTAAGTTGTTGAATGAGATTTCTATAGGTTGTTAGATTCCTAGATCAACA
ACTGGTACGAAGTCCTGAGGTATAGAGCAGAGAAGGCAGTATTTGTCCTAGATGGGGTTTAAGCC
ACTATTCAATTGGGAGAAGTAGGTAAACAGTAATGAGGTGCTCTCCACTGCCCGTGAAAATGCTC
CATATCGATTAAGGAGAGGGTTAGTTACTCAGATGCATAACCTGT
Found at i:611197 original size:17 final size:17
Alignment explanation
Indices: 611175--611208 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
611165 ATAGCAAGTT
*
611175 CTAGTTATAGGTGATAG
1 CTAGTTATAGGTAATAG
611192 CTAGTTATAGGTAATAG
1 CTAGTTATAGGTAATAG
611209 AATAGGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (17 bp):
CTAGTTATAGGTAATAG
Left flanking sequence: Indices 610675 -- 611174
GTTATACCAAAGCAAGTTGTAGCTAACAAACAAGTGAGCGCCTTTTGGTTAGTAAGGTAGTCCCT
ATATGTATATACTGAGTTTAGGAGAGGGCAGACGAAGATAGCGGCAGCGTTAATAGAATGAGATT
AGGCGTTAATAGAATGAGATTAGGCGTTAATAGAATGATCTAGTCCATATTCGTTTGTTCCAAAG
TCTATCAACGAAGCGACTTTGTTCCAGAGTCTAGCAACTTATATACTTTGTTCCTTCGTTCCTTC
GTCTATCAACGAAGCGACTTGTAGTTCCTGATTAGAGGATAAATTAGTTCTCTATTCTCTAGCTA
GTTTCTTTCGTTCTACTAGGTAGTTAATATACTGCGGAAATGGTTAAGCACTAGTTAGTGTATAT
ACAACTACAATGGTTCGTTTTTCAGTAGTAAGTCCAGCTATTCGTTTTTCTAAGTAAGTCCAGCT
AGCTACTAGCCCACTCAGATAGTTAGTTATAGGTAATAGCAAGTT
Right flanking sequence: Indices 611209 -- 611708
AATAGGAAGTAGCTAAAGATTGAGGATAACTGTAGCTAATGAGTGAGGATAACTGTAGCTAATGA
GTTACCTCCTTTTGTCACGAGCGTAGCTAATAGGCTAGTTTAGTTCCTGCCGGTAGTTTCTACTA
GTTCATAAGCATTTGTTAGTTAAGATACTGCGGGAATGGTTCGTTTTGCATACTGCTAGTTAGAG
GTTCTTTTTCAGTAGTACTGCTAGTGCCGAGAGAGAGGTAGAGGTGAGTTTTCTAGATAGTTACG
AAAGCTAAGTTGTTGAATGAGATTTCTATAGGTTGTTAGATTCCTAGATCAACAACTGGTACGAA
GTCCTGAGGTATAGAGCAGAGAAGGCAGTATTTGTCCTAGATGGGGTTTAAGCCACTATTCAATT
GGGAGAAGTAGGTAAACAGTAATGAGGTGCTCTCCACTGCCCGTGAAAATGCTCCATATCGATTA
AGGAGAGGGTTAGTTACTCAGATGCATAACCTGTCATATGAAGTA
Found at i:611247 original size:23 final size:23
Alignment explanation
Indices: 611217--611275 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
611207 AGAATAGGAA
*
611217 GTAGCTAAAGATTGAGGATAACT
1 GTAGCTAAAGAGTGAGGATAACT
*
611240 GTAGCTAATGAGTGAGGATAACT
1 GTAGCTAAAGAGTGAGGATAACT
*
611263 GTAGCTAATGAGT
1 GTAGCTAAAGAGT
611276 TACCTCCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.27
Consensus pattern (23 bp):
GTAGCTAAAGAGTGAGGATAACT
Left flanking sequence: Indices 610717 -- 611216
TTTTGGTTAGTAAGGTAGTCCCTATATGTATATACTGAGTTTAGGAGAGGGCAGACGAAGATAGC
GGCAGCGTTAATAGAATGAGATTAGGCGTTAATAGAATGAGATTAGGCGTTAATAGAATGATCTA
GTCCATATTCGTTTGTTCCAAAGTCTATCAACGAAGCGACTTTGTTCCAGAGTCTAGCAACTTAT
ATACTTTGTTCCTTCGTTCCTTCGTCTATCAACGAAGCGACTTGTAGTTCCTGATTAGAGGATAA
ATTAGTTCTCTATTCTCTAGCTAGTTTCTTTCGTTCTACTAGGTAGTTAATATACTGCGGAAATG
GTTAAGCACTAGTTAGTGTATATACAACTACAATGGTTCGTTTTTCAGTAGTAAGTCCAGCTATT
CGTTTTTCTAAGTAAGTCCAGCTAGCTACTAGCCCACTCAGATAGTTAGTTATAGGTAATAGCAA
GTTCTAGTTATAGGTGATAGCTAGTTATAGGTAATAGAATAGGAA
Right flanking sequence: Indices 611276 -- 611775
TACCTCCTTTTGTCACGAGCGTAGCTAATAGGCTAGTTTAGTTCCTGCCGGTAGTTTCTACTAGT
TCATAAGCATTTGTTAGTTAAGATACTGCGGGAATGGTTCGTTTTGCATACTGCTAGTTAGAGGT
TCTTTTTCAGTAGTACTGCTAGTGCCGAGAGAGAGGTAGAGGTGAGTTTTCTAGATAGTTACGAA
AGCTAAGTTGTTGAATGAGATTTCTATAGGTTGTTAGATTCCTAGATCAACAACTGGTACGAAGT
CCTGAGGTATAGAGCAGAGAAGGCAGTATTTGTCCTAGATGGGGTTTAAGCCACTATTCAATTGG
GAGAAGTAGGTAAACAGTAATGAGGTGCTCTCCACTGCCCGTGAAAATGCTCCATATCGATTAAG
GAGAGGGTTAGTTACTCAGATGCATAACCTGTCATATGAAGTACTCGAGCAAAGAGAAGAGGTAC
GAAGTGTTGACTTCCCAGGAAGAGGTCATTTCTATCTCGAAAAGA
Found at i:611830 original size:28 final size:28
Alignment explanation
Indices: 611790--611867 Score: 147
Period size: 28 Copynumber: 2.8 Consensus size: 28
611780 CGAAGCACGA
611790 GACCTGCCGGATTCAGTATTTATTTCTT
1 GACCTGCCGGATTCAGTATTTATTTCTT
611818 GACCTGCCGGATTCAGTATTTATTTCTT
1 GACCTGCCGGATTCAGTATTTATTTCTT
611846 GACCTGCCGGGATTCAGTATTT
1 GACCTGCC-GGATTCAGTATTT
611868 CTAACGAGAC
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 36 0.73
29 13 0.27
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.40
Consensus pattern (28 bp):
GACCTGCCGGATTCAGTATTTATTTCTT
Left flanking sequence: Indices 611290 -- 611789
ACGAGCGTAGCTAATAGGCTAGTTTAGTTCCTGCCGGTAGTTTCTACTAGTTCATAAGCATTTGT
TAGTTAAGATACTGCGGGAATGGTTCGTTTTGCATACTGCTAGTTAGAGGTTCTTTTTCAGTAGT
ACTGCTAGTGCCGAGAGAGAGGTAGAGGTGAGTTTTCTAGATAGTTACGAAAGCTAAGTTGTTGA
ATGAGATTTCTATAGGTTGTTAGATTCCTAGATCAACAACTGGTACGAAGTCCTGAGGTATAGAG
CAGAGAAGGCAGTATTTGTCCTAGATGGGGTTTAAGCCACTATTCAATTGGGAGAAGTAGGTAAA
CAGTAATGAGGTGCTCTCCACTGCCCGTGAAAATGCTCCATATCGATTAAGGAGAGGGTTAGTTA
CTCAGATGCATAACCTGTCATATGAAGTACTCGAGCAAAGAGAAGAGGTACGAAGTGTTGACTTC
CCAGGAAGAGGTCATTTCTATCTCGAAAAGAGGAGCGAAGCACGA
Right flanking sequence: Indices 611868 -- 612367
CTAACGAGACTGAAAAGAGAGGTAACGACTAGTTCCTGCCGGTAGTTTCTACTAGTTTGAATAAT
TACAATACTTATTGGTGCCGGAAATGGTTCTCAAATGAAATGGGTATACAGGAAATGGCCCTTTC
GAGTACTACAGGTAACTGTCAGCTAGCCTTATAAGATTGAGTGAGAATACCTGTAGCTAGCCTTC
GGCGATTGAGAATACCTGTAGCTAACATCCAGCTAGTCCACTTAGGAAAGAAAGATAGATAGTAC
TAGGTTTTGCTTTTCCGTGGTAAGCAGCTAGTAAACTGAGTGATAATGTCAGCTAGGTAGTTCCC
TTGTTTGTCAGCTAGTCAATCAACGCCAGCTCTTCTCAGTGTTGCAAGGAAACAGAGAAACTCAG
GAAAGAGGGTTAACAGTTAAACCAAGGAAAGACAGTCAATCCAGTTGGTGGGCAAGAAAGGAAGC
TCCAACACAAGGCAATAGGTATATACTAGATATATGGTAGTAGAT
Found at i:612389 original size:32 final size:32
Alignment explanation
Indices: 612348--612410 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
612338 TAGGTATATA
612348 CTAGATATATGGTAGTAGATGAGAAAGAGGTT
1 CTAGATATATGGTAGTAGATGAGAAAGAGGTT
612380 CTAGATATATGGTAGTAGATGAGAAAGAGGT
1 CTAGATATATGGTAGTAGATGAGAAAGAGGT
612411 GATAGTCCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.03, G:0.32, T:0.27
Consensus pattern (32 bp):
CTAGATATATGGTAGTAGATGAGAAAGAGGTT
Left flanking sequence: Indices 611848 -- 612347
CCTGCCGGGATTCAGTATTTCTAACGAGACTGAAAAGAGAGGTAACGACTAGTTCCTGCCGGTAG
TTTCTACTAGTTTGAATAATTACAATACTTATTGGTGCCGGAAATGGTTCTCAAATGAAATGGGT
ATACAGGAAATGGCCCTTTCGAGTACTACAGGTAACTGTCAGCTAGCCTTATAAGATTGAGTGAG
AATACCTGTAGCTAGCCTTCGGCGATTGAGAATACCTGTAGCTAACATCCAGCTAGTCCACTTAG
GAAAGAAAGATAGATAGTACTAGGTTTTGCTTTTCCGTGGTAAGCAGCTAGTAAACTGAGTGATA
ATGTCAGCTAGGTAGTTCCCTTGTTTGTCAGCTAGTCAATCAACGCCAGCTCTTCTCAGTGTTGC
AAGGAAACAGAGAAACTCAGGAAAGAGGGTTAACAGTTAAACCAAGGAAAGACAGTCAATCCAGT
TGGTGGGCAAGAAAGGAAGCTCCAACACAAGGCAATAGGTATATA
Right flanking sequence: Indices 612411 -- 612910
GATAGTCCGGTAGCTAGTATGATGGTTTCGGTATATACAACGGTAATGATAGTAGTTATAGGTTA
ACGCTAATTGAGTTTTCTCCTTTTGGTGCCGAAGGTAAGGTAGTCGCTATCTATATACGAAGGTA
ATAGTAATACTGAGTTATTATATTAGGAGAGAGAATCATACTTTTCTAGCTAGGCAATGAGATAG
GTAAGATGAGGTTTAGCTCTTTGTTCTCTAGTAAGTTGCTAAGGTTTCCCTGCCGTTTGTCTTAG
TCCGGTTATTTCTACTATAGGTAGTAGGAAGTAAACTAGTTAGGATAGTCCGTCCGATAGCTAGT
ATTACAGGAGTGTATTTTCCGGTCAATACAGTTGTTCAACAAAGGACTTCGTACCTGTTGTTTCC
GGAAAGGTGAGGTGGTAATGAATGGGATGTATGGAACCTGCAGCTAATGTTTCTATATATATAAT
CTCATTGTAATGTCAGCTAGTCAACTAAAATAAAGCCAATGTCAG
Found at i:613399 original size:46 final size:46
Alignment explanation
Indices: 613327--613414 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
613317 TAGCTGGTGG
*
613327 TGTAGCTTACCGAGTGACCAACGGGAACGTAGTAAAAGCGGCTAAT
1 TGTAGCTTAACGAGTGACCAACGGGAACGTAGTAAAAGCGGCTAAT
*
613373 TGTAGCTTAACGAGTGACCGTA-GGGAACGTAGTAAAAGCGGC
1 TGTAGCTTAACGAGTGACC-AACGGGAACGTAGTAAAAGCGGC
613415 GTAGCTAAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
46 38 0.97
47 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.19
Consensus pattern (46 bp):
TGTAGCTTAACGAGTGACCAACGGGAACGTAGTAAAAGCGGCTAAT
Left flanking sequence: Indices 612827 -- 613326
ATGTATGGAACCTGCAGCTAATGTTTCTATATATATAATCTCATTGTAATGTCAGCTAGTCAACT
AAAATAAAGCCAATGTCAGCTAGTCAAGCAAGTAAGCCGGTGAATCAAATTGTGAAACAAAGTAA
GTTTACGCTAATACTAATGAGTTACCTCAGCTTTTTGGTTAGAAGGTAGTGGCTCTATGTTAACT
AGTCCGTTCTCGACAAAGTGAGTTCCTGGTTTCAAATGTATTGATCTAGGTAATACGAGGTTTAG
CTCTATGTTAACTAGTAAGTTATACAGGGGAGCTCAACGTTTTTCTAAGGTAAGCTAGGGGTTGG
TTTTCCGTCGGTTTGTTTTCTCTTAGGGAGGTGATAGCTAGTATCTATTAATCTAGAAAGCTAAG
TTGTTGAATGAGATTTCTATAGGATAGGTAACACGATGGATAGTACGGTAGGTACGCCGGTAGTT
TCTCCTTGCATTAGGGTACTAGTCTAGTCCATAGATAGCTGGTGG
Right flanking sequence: Indices 613415 -- 613914
GTAGCTAAGCCCCCGTCCGTTTGAGGGGACCTGTAGCTTACGAGTCCGACGAAGTAAAGCGGCTA
CTGTAGCTACTAAAGAAAGAAATTAATAATAAAGAAAGAAAGGGAAACTAGTTCCTTTGTTAGCT
GCTAGAAGATAGAACTAGATAGATAGAACTAGATTTGTTTGATTGTATGATTGGTTAATAGATTG
GATAGAGTGGAGGTAAACCTCATAATGAATAAGACATACTTCCAAGTTAAGTGCATAATGATACT
TATCTACCGTTCAAAGGAGGGAGGGACGCGCAGGCTTGATAGCAGTACTCTTTCTTAGAATCCCT
TGTTTTGCATATAGGGAAAGGGGGCTCGGGGGAAAACCTTTTTAGGGACATAGATATAGAAGTCG
GAGATATAGACAACTTTCTAACTCTTGCGGAACCCAGATAACTCTATCGGAACCCAGATAACTCT
ATAGGAGGATAGCCCAGATAACTCTATCGGAGCCCAGATTCTGGA
Found at i:613570 original size:14 final size:14
Alignment explanation
Indices: 613546--613578 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
613536 TTGTTAGCTG
613546 CTAGA-AGATAGAA
1 CTAGATAGATAGAA
613559 CTAGATAGATAGAA
1 CTAGATAGATAGAA
613573 CTAGAT
1 CTAGAT
613579 TTGTTTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.21
Consensus pattern (14 bp):
CTAGATAGATAGAA
Left flanking sequence: Indices 613046 -- 613545
CCTGGTTTCAAATGTATTGATCTAGGTAATACGAGGTTTAGCTCTATGTTAACTAGTAAGTTATA
CAGGGGAGCTCAACGTTTTTCTAAGGTAAGCTAGGGGTTGGTTTTCCGTCGGTTTGTTTTCTCTT
AGGGAGGTGATAGCTAGTATCTATTAATCTAGAAAGCTAAGTTGTTGAATGAGATTTCTATAGGA
TAGGTAACACGATGGATAGTACGGTAGGTACGCCGGTAGTTTCTCCTTGCATTAGGGTACTAGTC
TAGTCCATAGATAGCTGGTGGTGTAGCTTACCGAGTGACCAACGGGAACGTAGTAAAAGCGGCTA
ATTGTAGCTTAACGAGTGACCGTAGGGAACGTAGTAAAAGCGGCGTAGCTAAGCCCCCGTCCGTT
TGAGGGGACCTGTAGCTTACGAGTCCGACGAAGTAAAGCGGCTACTGTAGCTACTAAAGAAAGAA
ATTAATAATAAAGAAAGAAAGGGAAACTAGTTCCTTTGTTAGCTG
Right flanking sequence: Indices 613579 -- 614078
TTGTTTGATTGTATGATTGGTTAATAGATTGGATAGAGTGGAGGTAAACCTCATAATGAATAAGA
CATACTTCCAAGTTAAGTGCATAATGATACTTATCTACCGTTCAAAGGAGGGAGGGACGCGCAGG
CTTGATAGCAGTACTCTTTCTTAGAATCCCTTGTTTTGCATATAGGGAAAGGGGGCTCGGGGGAA
AACCTTTTTAGGGACATAGATATAGAAGTCGGAGATATAGACAACTTTCTAACTCTTGCGGAACC
CAGATAACTCTATCGGAACCCAGATAACTCTATAGGAGGATAGCCCAGATAACTCTATCGGAGCC
CAGATTCTGGATAACTCGACCGACAGAAATGAAGAAATTAATATTTCATTTCCTCTACTCCTGTA
TACCTATAGAAAGGTTGGTTAACTCTACTCCTGTATACCTATAGAAAGGTTGGTTAACTCCCATG
CTATATAACATAACTCTAGAAAGCTTACCTCGGATCTAATCTAGC
Found at i:613848 original size:20 final size:20
Alignment explanation
Indices: 613823--613908 Score: 93
Period size: 20 Copynumber: 4.0 Consensus size: 20
613813 GACAACTTTC
613823 TAACTCT-TGCGGAACCCAGA
1 TAACTCTAT-CGGAACCCAGA
613843 TAACTCTATCGGAACCCAGA
1 TAACTCTATCGGAACCCAGA
*
613863 TAACTCTATAGGAGGATAGCCCAGA
1 TAACTCTAT---CGGA-A-CCCAGA
*
613888 TAACTCTATCGGAGCCCAGA
1 TAACTCTATCGGAACCCAGA
613908 T
1 T
613909 TCTGGATAAC
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
20 34 0.60
21 1 0.02
22 3 0.05
23 3 0.05
24 1 0.02
25 15 0.26
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.21
Consensus pattern (20 bp):
TAACTCTATCGGAACCCAGA
Left flanking sequence: Indices 613323 -- 613822
GTGGTGTAGCTTACCGAGTGACCAACGGGAACGTAGTAAAAGCGGCTAATTGTAGCTTAACGAGT
GACCGTAGGGAACGTAGTAAAAGCGGCGTAGCTAAGCCCCCGTCCGTTTGAGGGGACCTGTAGCT
TACGAGTCCGACGAAGTAAAGCGGCTACTGTAGCTACTAAAGAAAGAAATTAATAATAAAGAAAG
AAAGGGAAACTAGTTCCTTTGTTAGCTGCTAGAAGATAGAACTAGATAGATAGAACTAGATTTGT
TTGATTGTATGATTGGTTAATAGATTGGATAGAGTGGAGGTAAACCTCATAATGAATAAGACATA
CTTCCAAGTTAAGTGCATAATGATACTTATCTACCGTTCAAAGGAGGGAGGGACGCGCAGGCTTG
ATAGCAGTACTCTTTCTTAGAATCCCTTGTTTTGCATATAGGGAAAGGGGGCTCGGGGGAAAACC
TTTTTAGGGACATAGATATAGAAGTCGGAGATATAGACAACTTTC
Right flanking sequence: Indices 613909 -- 614408
TCTGGATAACTCGACCGACAGAAATGAAGAAATTAATATTTCATTTCCTCTACTCCTGTATACCT
ATAGAAAGGTTGGTTAACTCTACTCCTGTATACCTATAGAAAGGTTGGTTAACTCCCATGCTATA
TAACATAACTCTAGAAAGCTTACCTCGGATCTAATCTAGCATCCGGTCTAATCTAACTCGATGTT
TGAGGTTACCGACCATGATGGATAGATAACTACTTCCGGAGGTTCCCGTTCACGTTCCCTCGGAT
TCTGAATAACTATCCGGAGTAGAGCTCTGAAAACTGCACTAGCCAGAGTATATTCAGCAATAGAA
ATATCAATAGAAATATCCTGAACAGAACACTTTGGAATAGAACAGAACAAACACTTTCCTCAGGA
ATAGAGCAGAGAAGGAGGTATTGGTCCATGAAAACTGGGGTTTAAGACAGGAAAACTGCGGTTTA
AGACAAAACACTTGAAAGAAACCAAACCTCGATAGGGAAACATAC
Found at i:614002 original size:35 final size:35
Alignment explanation
Indices: 613956--614028 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
613946 ATTTCATTTC
613956 CTCTACTCCTGTATACCTATAGAAAGGTTGGTTAA
1 CTCTACTCCTGTATACCTATAGAAAGGTTGGTTAA
613991 CTCTACTCCTGTATACCTATAGAAAGGTTGGTTAA
1 CTCTACTCCTGTATACCTATAGAAAGGTTGGTTAA
614026 CTC
1 CTC
614029 CCATGCTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (35 bp):
CTCTACTCCTGTATACCTATAGAAAGGTTGGTTAA
Left flanking sequence: Indices 613456 -- 613955
GAGTCCGACGAAGTAAAGCGGCTACTGTAGCTACTAAAGAAAGAAATTAATAATAAAGAAAGAAA
GGGAAACTAGTTCCTTTGTTAGCTGCTAGAAGATAGAACTAGATAGATAGAACTAGATTTGTTTG
ATTGTATGATTGGTTAATAGATTGGATAGAGTGGAGGTAAACCTCATAATGAATAAGACATACTT
CCAAGTTAAGTGCATAATGATACTTATCTACCGTTCAAAGGAGGGAGGGACGCGCAGGCTTGATA
GCAGTACTCTTTCTTAGAATCCCTTGTTTTGCATATAGGGAAAGGGGGCTCGGGGGAAAACCTTT
TTAGGGACATAGATATAGAAGTCGGAGATATAGACAACTTTCTAACTCTTGCGGAACCCAGATAA
CTCTATCGGAACCCAGATAACTCTATAGGAGGATAGCCCAGATAACTCTATCGGAGCCCAGATTC
TGGATAACTCGACCGACAGAAATGAAGAAATTAATATTTCATTTC
Right flanking sequence: Indices 614029 -- 614528
CCATGCTATATAACATAACTCTAGAAAGCTTACCTCGGATCTAATCTAGCATCCGGTCTAATCTA
ACTCGATGTTTGAGGTTACCGACCATGATGGATAGATAACTACTTCCGGAGGTTCCCGTTCACGT
TCCCTCGGATTCTGAATAACTATCCGGAGTAGAGCTCTGAAAACTGCACTAGCCAGAGTATATTC
AGCAATAGAAATATCAATAGAAATATCCTGAACAGAACACTTTGGAATAGAACAGAACAAACACT
TTCCTCAGGAATAGAGCAGAGAAGGAGGTATTGGTCCATGAAAACTGGGGTTTAAGACAGGAAAA
CTGCGGTTTAAGACAAAACACTTGAAAGAAACCAAACCTCGATAGGGAAACATACACGAGGATGC
CAGAACTCACGTGAAAATGCATGCAATCGATGTCCGCCGATAGTATCATTAGGATATGCAGAACC
AGGCATATGAACTAGGAGGTCAGATAAGACCCTTTCCCCAGGTGG
Found at i:614243 original size:12 final size:12
Alignment explanation
Indices: 614226--614250 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
614216 GTATATTCAG
614226 CAATAGAAATAT
1 CAATAGAAATAT
614238 CAATAGAAATAT
1 CAATAGAAATAT
614250 C
1 C
614251 CTGAACAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (12 bp):
CAATAGAAATAT
Left flanking sequence: Indices 613726 -- 614225
TTCTTAGAATCCCTTGTTTTGCATATAGGGAAAGGGGGCTCGGGGGAAAACCTTTTTAGGGACAT
AGATATAGAAGTCGGAGATATAGACAACTTTCTAACTCTTGCGGAACCCAGATAACTCTATCGGA
ACCCAGATAACTCTATAGGAGGATAGCCCAGATAACTCTATCGGAGCCCAGATTCTGGATAACTC
GACCGACAGAAATGAAGAAATTAATATTTCATTTCCTCTACTCCTGTATACCTATAGAAAGGTTG
GTTAACTCTACTCCTGTATACCTATAGAAAGGTTGGTTAACTCCCATGCTATATAACATAACTCT
AGAAAGCTTACCTCGGATCTAATCTAGCATCCGGTCTAATCTAACTCGATGTTTGAGGTTACCGA
CCATGATGGATAGATAACTACTTCCGGAGGTTCCCGTTCACGTTCCCTCGGATTCTGAATAACTA
TCCGGAGTAGAGCTCTGAAAACTGCACTAGCCAGAGTATATTCAG
Right flanking sequence: Indices 614251 -- 614750
CTGAACAGAACACTTTGGAATAGAACAGAACAAACACTTTCCTCAGGAATAGAGCAGAGAAGGAG
GTATTGGTCCATGAAAACTGGGGTTTAAGACAGGAAAACTGCGGTTTAAGACAAAACACTTGAAA
GAAACCAAACCTCGATAGGGAAACATACACGAGGATGCCAGAACTCACGTGAAAATGCATGCAAT
CGATGTCCGCCGATAGTATCATTAGGATATGCAGAACCAGGCATATGAACTAGGAGGTCAGATAA
GACCCTTTCCCCAGGTGGGAAAGCGAGTCGCTAAGCAGTTACCTTTCCGGTGTATTTACGGAAGG
TTTTAGCAGCTATTTCTTTCCTTCTCTTTTCTGGAGAACTAGGTCGAGGTAAGGTAAGGATCGGT
AGTCTAGATGCCATAGTCGATATTTCAATATTCTAGATTCCATAGTCCATATTTCAATATTCTAT
TTCGATGGAAAAATGAGGAGGATTCTGTTTCTTAATAATGGACAA
Found at i:614354 original size:21 final size:21
Alignment explanation
Indices: 614328--614368 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
614318 ATTGGTCCAT
*
614328 GAAAACTGGGGTTTAAGACAG
1 GAAAACTGCGGTTTAAGACAG
614349 GAAAACTGCGGTTTAAGACA
1 GAAAACTGCGGTTTAAGACA
614369 AAACACTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20
Consensus pattern (21 bp):
GAAAACTGCGGTTTAAGACAG
Left flanking sequence: Indices 613828 -- 614327
CTTGCGGAACCCAGATAACTCTATCGGAACCCAGATAACTCTATAGGAGGATAGCCCAGATAACT
CTATCGGAGCCCAGATTCTGGATAACTCGACCGACAGAAATGAAGAAATTAATATTTCATTTCCT
CTACTCCTGTATACCTATAGAAAGGTTGGTTAACTCTACTCCTGTATACCTATAGAAAGGTTGGT
TAACTCCCATGCTATATAACATAACTCTAGAAAGCTTACCTCGGATCTAATCTAGCATCCGGTCT
AATCTAACTCGATGTTTGAGGTTACCGACCATGATGGATAGATAACTACTTCCGGAGGTTCCCGT
TCACGTTCCCTCGGATTCTGAATAACTATCCGGAGTAGAGCTCTGAAAACTGCACTAGCCAGAGT
ATATTCAGCAATAGAAATATCAATAGAAATATCCTGAACAGAACACTTTGGAATAGAACAGAACA
AACACTTTCCTCAGGAATAGAGCAGAGAAGGAGGTATTGGTCCAT
Right flanking sequence: Indices 614369 -- 614868
AAACACTTGAAAGAAACCAAACCTCGATAGGGAAACATACACGAGGATGCCAGAACTCACGTGAA
AATGCATGCAATCGATGTCCGCCGATAGTATCATTAGGATATGCAGAACCAGGCATATGAACTAG
GAGGTCAGATAAGACCCTTTCCCCAGGTGGGAAAGCGAGTCGCTAAGCAGTTACCTTTCCGGTGT
ATTTACGGAAGGTTTTAGCAGCTATTTCTTTCCTTCTCTTTTCTGGAGAACTAGGTCGAGGTAAG
GTAAGGATCGGTAGTCTAGATGCCATAGTCGATATTTCAATATTCTAGATTCCATAGTCCATATT
TCAATATTCTATTTCGATGGAAAAATGAGGAGGATTCTGTTTCTTAATAATGGACAAGATTCCAG
AATTATGGTTAACCCGAAAACCTTTTAGGTACTCCGGGATTTAGCCCCAGGCCGAGGCCTGATGA
AAACAGGGTCAAATAAGAACCCAAATAACTGACTTAGTGCAAAGG
Found at i:614685 original size:29 final size:29
Alignment explanation
Indices: 614643--614704 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
614633 GGATCGGTAG
*
614643 TCTAGATGCCATAGTCGATATTTCAATAT
1 TCTAGATGCCATAGTCCATATTTCAATAT
*
614672 TCTAGATTCCATAGTCCATATTTCAATAT
1 TCTAGATGCCATAGTCCATATTTCAATAT
614701 TCTA
1 TCTA
614705 TTTCGATGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (29 bp):
TCTAGATGCCATAGTCCATATTTCAATAT
Left flanking sequence: Indices 614143 -- 614642
AGGTTCCCGTTCACGTTCCCTCGGATTCTGAATAACTATCCGGAGTAGAGCTCTGAAAACTGCAC
TAGCCAGAGTATATTCAGCAATAGAAATATCAATAGAAATATCCTGAACAGAACACTTTGGAATA
GAACAGAACAAACACTTTCCTCAGGAATAGAGCAGAGAAGGAGGTATTGGTCCATGAAAACTGGG
GTTTAAGACAGGAAAACTGCGGTTTAAGACAAAACACTTGAAAGAAACCAAACCTCGATAGGGAA
ACATACACGAGGATGCCAGAACTCACGTGAAAATGCATGCAATCGATGTCCGCCGATAGTATCAT
TAGGATATGCAGAACCAGGCATATGAACTAGGAGGTCAGATAAGACCCTTTCCCCAGGTGGGAAA
GCGAGTCGCTAAGCAGTTACCTTTCCGGTGTATTTACGGAAGGTTTTAGCAGCTATTTCTTTCCT
TCTCTTTTCTGGAGAACTAGGTCGAGGTAAGGTAAGGATCGGTAG
Right flanking sequence: Indices 614705 -- 615204
TTTCGATGGAAAAATGAGGAGGATTCTGTTTCTTAATAATGGACAAGATTCCAGAATTATGGTTA
ACCCGAAAACCTTTTAGGTACTCCGGGATTTAGCCCCAGGCCGAGGCCTGATGAAAACAGGGTCA
AATAAGAACCCAAATAACTGACTTAGTGCAAAGGAAAGTATAGGGTATAAACCCATACTAAGGAC
TAAGGAAGCATGATAGGTGATTATTCCAAATGGAATATTAATAAAATCTTCATTCTAATTCCTAC
GGGAAGAGGAAGAGGAGTATTTCATTTTAGTTTCTCCTAATTCCAATGAGGAAGGGGAGCTATTA
GTTTTGCGTTGGTAAGCTAGGGGTTTTCTGGGGTTTCTCTTAGTCCCGCTAGTAGCTATTAGTTA
AGAAAGCGGCGTTGTTGAATGAGATTTCTATAGATAGGTTGAACGATTCCTAGATAGTCCGGTAC
TAGTTAGTTGCTCTTTGCATTAGTAAACTAGTCTAGCTAATAGAT
Found at i:615301 original size:15 final size:15
Alignment explanation
Indices: 615281--615322 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
615271 CTACAGCTAG
615281 GTAGTTGGTTTCGTT
1 GTAGTTGGTTTCGTT
615296 GTAGTTGGTTTCGTT
1 GTAGTTGGTTTCGTT
* *
615311 GTCGTTAGTTTC
1 GTAGTTGGTTTC
615323 TATTCTAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.07, C:0.10, G:0.31, T:0.52
Consensus pattern (15 bp):
GTAGTTGGTTTCGTT
Left flanking sequence: Indices 614781 -- 615280
TTTTAGGTACTCCGGGATTTAGCCCCAGGCCGAGGCCTGATGAAAACAGGGTCAAATAAGAACCC
AAATAACTGACTTAGTGCAAAGGAAAGTATAGGGTATAAACCCATACTAAGGACTAAGGAAGCAT
GATAGGTGATTATTCCAAATGGAATATTAATAAAATCTTCATTCTAATTCCTACGGGAAGAGGAA
GAGGAGTATTTCATTTTAGTTTCTCCTAATTCCAATGAGGAAGGGGAGCTATTAGTTTTGCGTTG
GTAAGCTAGGGGTTTTCTGGGGTTTCTCTTAGTCCCGCTAGTAGCTATTAGTTAAGAAAGCGGCG
TTGTTGAATGAGATTTCTATAGATAGGTTGAACGATTCCTAGATAGTCCGGTACTAGTTAGTTGC
TCTTTGCATTAGTAAACTAGTCTAGCTAATAGATTGAGATAGTCCATATTGGATCCTTTGTTCAT
CCCTTGGGAGTCAAGTAAGATAAGAGGTTTGAGTTCTACAGCTAG
Right flanking sequence: Indices 615323 -- 615822
TATTCTAAGTCGTTAGTTTCGTTGGGAAAGGGTATTGACTTAGTCCATATGAGTTTAGGTAATCT
GAGGTTTAGCTCTTTCTTCCGTAGTTGGGAGTTTGCGGGTTGAGTTCTCTAGCTAGTTTGTTTCG
TTGCGTTGGTTGCCGGTATGTATATACTTAGGTAATGAGTGATAGATGGTAGCTAATACTGTTGT
AGTAGTATAGGGGAAGGCTAACGTTAGTGAGTTAGTAAGGTCAGCTATTCCTTTTTCCTAAGTAA
GTCCAGCTAGCTACTAGCCCACTCAGATAGCTAGTTTGTTTGAGTAAGTGGTTGTTCTATCTAGT
TGGAGGTAATAGCGTTAGAATGGGTTGGTTTCTTCTAGTTATAGGAAGTGGTTGTTCTATCTAGT
TATAGGAAGTGGTTGTTCTAGTTCTAGGTAATAGGAAGTAGCTAATAGGCCAGTTCCCGGCGGTA
GTTGCTACTAGTTAAGATACTTAGGTAGTTGTTGCTACTAGTTCA
Found at i:615711 original size:26 final size:26
Alignment explanation
Indices: 615677--615751 Score: 107
Period size: 26 Copynumber: 2.8 Consensus size: 26
615667 ATGGGTTGGT
615677 TTCT-TCTAGTTATAGGAAGTGGTTG
1 TTCTATCTAGTTATAGGAAGTGGTTG
615702 TTCTATCTAGTTATAGGAAGTGGTTG
1 TTCTATCTAGTTATAGGAAGTGGTTG
*
615728 TTCTAGTTCTAGGTAATAGGAAGT
1 TTCTA--TCTA-GTTATAGGAAGT
615752 AGCTAATAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 4 0.09
26 26 0.58
28 4 0.09
29 11 0.24
ACGTcount: A:0.24, C:0.08, G:0.27, T:0.41
Consensus pattern (26 bp):
TTCTATCTAGTTATAGGAAGTGGTTG
Left flanking sequence: Indices 615177 -- 615676
CATTAGTAAACTAGTCTAGCTAATAGATTGAGATAGTCCATATTGGATCCTTTGTTCATCCCTTG
GGAGTCAAGTAAGATAAGAGGTTTGAGTTCTACAGCTAGGTAGTTGGTTTCGTTGTAGTTGGTTT
CGTTGTCGTTAGTTTCTATTCTAAGTCGTTAGTTTCGTTGGGAAAGGGTATTGACTTAGTCCATA
TGAGTTTAGGTAATCTGAGGTTTAGCTCTTTCTTCCGTAGTTGGGAGTTTGCGGGTTGAGTTCTC
TAGCTAGTTTGTTTCGTTGCGTTGGTTGCCGGTATGTATATACTTAGGTAATGAGTGATAGATGG
TAGCTAATACTGTTGTAGTAGTATAGGGGAAGGCTAACGTTAGTGAGTTAGTAAGGTCAGCTATT
CCTTTTTCCTAAGTAAGTCCAGCTAGCTACTAGCCCACTCAGATAGCTAGTTTGTTTGAGTAAGT
GGTTGTTCTATCTAGTTGGAGGTAATAGCGTTAGAATGGGTTGGT
Right flanking sequence: Indices 615752 -- 616251
AGCTAATAGGCCAGTTCCCGGCGGTAGTTGCTACTAGTTAAGATACTTAGGTAGTTGTTGCTACT
AGTTCATAAGCACTTGTTAGTTATAATACTGCCGGTAGTGGTTAGGAAATGGTGCCGTAAGGCAA
TGTATTGCGCGAGTATGTAGGGTAAGGTAACTGTCAGCTTCTATTCGTTGATTGATCATACAATG
GGACATGGGACAATGCAGTTAGCCAGGAAAGATTGATCATATCATACCTGGAGCTAATCCCCCGG
TTAAGAAAGAGGGAATGGAATGGAAAGCTAGTGTATATTATATCCAACTCCAATGGTTAGGTATA
GGTCCGCTTCGTTGTAGGTTAGTTTCTCAGTAGTAAGCGGCGTTTATATTAGTCTAGAAAACTCT
CTGTTTAGTTATACCAAAGTAAGTAGTTATACAAAAGGCAGTAGTTGTACAAAAGGCAGTAGTTG
TAGCTAAGGAAGTAGTTGTAGCTAATGATAATGAGTTACCTCCTT
Found at i:616184 original size:18 final size:18
Alignment explanation
Indices: 616147--616205 Score: 82
Period size: 18 Copynumber: 3.3 Consensus size: 18
616137 ACTCTCTGTT
* **
616147 TAGTTATACCAAAGTAAG
1 TAGTTATACAAAAGGCAG
616165 TAGTTATACAAAAGGCAG
1 TAGTTATACAAAAGGCAG
*
616183 TAGTTGTACAAAAGGCAG
1 TAGTTATACAAAAGGCAG
616201 TAGTT
1 TAGTT
616206 GTAGCTAAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (18 bp):
TAGTTATACAAAAGGCAG
Left flanking sequence: Indices 615647 -- 616146
TTGGAGGTAATAGCGTTAGAATGGGTTGGTTTCTTCTAGTTATAGGAAGTGGTTGTTCTATCTAG
TTATAGGAAGTGGTTGTTCTAGTTCTAGGTAATAGGAAGTAGCTAATAGGCCAGTTCCCGGCGGT
AGTTGCTACTAGTTAAGATACTTAGGTAGTTGTTGCTACTAGTTCATAAGCACTTGTTAGTTATA
ATACTGCCGGTAGTGGTTAGGAAATGGTGCCGTAAGGCAATGTATTGCGCGAGTATGTAGGGTAA
GGTAACTGTCAGCTTCTATTCGTTGATTGATCATACAATGGGACATGGGACAATGCAGTTAGCCA
GGAAAGATTGATCATATCATACCTGGAGCTAATCCCCCGGTTAAGAAAGAGGGAATGGAATGGAA
AGCTAGTGTATATTATATCCAACTCCAATGGTTAGGTATAGGTCCGCTTCGTTGTAGGTTAGTTT
CTCAGTAGTAAGCGGCGTTTATATTAGTCTAGAAAACTCTCTGTT
Right flanking sequence: Indices 616206 -- 616705
GTAGCTAAGGAAGTAGTTGTAGCTAATGATAATGAGTTACCTCCTTCTGTCACGAGGGGAGTGTC
TATATACTCTAGGATATATACTCTAGTAAGGTAATGGTTCGTTTCGTTGTAGTACTACTAGTTAG
AGGTTCGTTTCCTAGATTAGATAGTTACGAAAGCGGCAGACTAGGTTTTTCTTTGCTTTTCCTTG
GTAAGCTATCCGTGGTAAGCTATCCCTTGTTTGCTAGTTAAGAAAGCTCGTTGTTAGATGATCTT
CGTCTATATAGGTTGTTAGATTCCTAGAGCATGAAGATGTATAATCTCTCATTACTTGTTTGGAT
TGGTTTCCACTCAACTGGGGTGAAAGTCTGTTTAATCGGTTATTCCTTCTGAGCCGACCGGAAAC
CTAAGATTGAGAATACTGTAGCTAATAAAGAAAGCCCATGTCAGCTAGTCAACAAAGGAAGTTGG
AACTAACACAGTTGTGAAACAAAGCAAGGAAAGAAAGGAAATAGG
Found at i:616206 original size:18 final size:18
Alignment explanation
Indices: 616163--616226 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
616153 TACCAAAGTA
*
616163 AGTAGTTATACAAAAGGC
1 AGTAGTTGTACAAAAGGC
616181 AGTAGTTGTACAAAAGGC
1 AGTAGTTGTACAAAAGGC
* *
616199 AGTAGTTGTAGC-TAAGGA
1 AGTAGTTGTA-CAAAAGGC
616217 AGTAGTTGTA
1 AGTAGTTGTA
616227 GCTAATGATA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
18 41 0.98
19 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.27
Consensus pattern (18 bp):
AGTAGTTGTACAAAAGGC
Left flanking sequence: Indices 615663 -- 616162
TAGAATGGGTTGGTTTCTTCTAGTTATAGGAAGTGGTTGTTCTATCTAGTTATAGGAAGTGGTTG
TTCTAGTTCTAGGTAATAGGAAGTAGCTAATAGGCCAGTTCCCGGCGGTAGTTGCTACTAGTTAA
GATACTTAGGTAGTTGTTGCTACTAGTTCATAAGCACTTGTTAGTTATAATACTGCCGGTAGTGG
TTAGGAAATGGTGCCGTAAGGCAATGTATTGCGCGAGTATGTAGGGTAAGGTAACTGTCAGCTTC
TATTCGTTGATTGATCATACAATGGGACATGGGACAATGCAGTTAGCCAGGAAAGATTGATCATA
TCATACCTGGAGCTAATCCCCCGGTTAAGAAAGAGGGAATGGAATGGAAAGCTAGTGTATATTAT
ATCCAACTCCAATGGTTAGGTATAGGTCCGCTTCGTTGTAGGTTAGTTTCTCAGTAGTAAGCGGC
GTTTATATTAGTCTAGAAAACTCTCTGTTTAGTTATACCAAAGTA
Right flanking sequence: Indices 616227 -- 616726
GCTAATGATAATGAGTTACCTCCTTCTGTCACGAGGGGAGTGTCTATATACTCTAGGATATATAC
TCTAGTAAGGTAATGGTTCGTTTCGTTGTAGTACTACTAGTTAGAGGTTCGTTTCCTAGATTAGA
TAGTTACGAAAGCGGCAGACTAGGTTTTTCTTTGCTTTTCCTTGGTAAGCTATCCGTGGTAAGCT
ATCCCTTGTTTGCTAGTTAAGAAAGCTCGTTGTTAGATGATCTTCGTCTATATAGGTTGTTAGAT
TCCTAGAGCATGAAGATGTATAATCTCTCATTACTTGTTTGGATTGGTTTCCACTCAACTGGGGT
GAAAGTCTGTTTAATCGGTTATTCCTTCTGAGCCGACCGGAAACCTAAGATTGAGAATACTGTAG
CTAATAAAGAAAGCCCATGTCAGCTAGTCAACAAAGGAAGTTGGAACTAACACAGTTGTGAAACA
AAGCAAGGAAAGAAAGGAAATAGGGTGCGCCAGTTAGTTGTGAAC
Found at i:616418 original size:14 final size:14
Alignment explanation
Indices: 616399--616425 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
616389 TGCTTTTCCT
616399 TGGTAAGCTATCCG
1 TGGTAAGCTATCCG
616413 TGGTAAGCTATCC
1 TGGTAAGCTATCC
616426 CTTGTTTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (14 bp):
TGGTAAGCTATCCG
Left flanking sequence: Indices 615899 -- 616398
TAGGGTAAGGTAACTGTCAGCTTCTATTCGTTGATTGATCATACAATGGGACATGGGACAATGCA
GTTAGCCAGGAAAGATTGATCATATCATACCTGGAGCTAATCCCCCGGTTAAGAAAGAGGGAATG
GAATGGAAAGCTAGTGTATATTATATCCAACTCCAATGGTTAGGTATAGGTCCGCTTCGTTGTAG
GTTAGTTTCTCAGTAGTAAGCGGCGTTTATATTAGTCTAGAAAACTCTCTGTTTAGTTATACCAA
AGTAAGTAGTTATACAAAAGGCAGTAGTTGTACAAAAGGCAGTAGTTGTAGCTAAGGAAGTAGTT
GTAGCTAATGATAATGAGTTACCTCCTTCTGTCACGAGGGGAGTGTCTATATACTCTAGGATATA
TACTCTAGTAAGGTAATGGTTCGTTTCGTTGTAGTACTACTAGTTAGAGGTTCGTTTCCTAGATT
AGATAGTTACGAAAGCGGCAGACTAGGTTTTTCTTTGCTTTTCCT
Right flanking sequence: Indices 616426 -- 616925
CTTGTTTGCTAGTTAAGAAAGCTCGTTGTTAGATGATCTTCGTCTATATAGGTTGTTAGATTCCT
AGAGCATGAAGATGTATAATCTCTCATTACTTGTTTGGATTGGTTTCCACTCAACTGGGGTGAAA
GTCTGTTTAATCGGTTATTCCTTCTGAGCCGACCGGAAACCTAAGATTGAGAATACTGTAGCTAA
TAAAGAAAGCCCATGTCAGCTAGTCAACAAAGGAAGTTGGAACTAACACAGTTGTGAAACAAAGC
AAGGAAAGAAAGGAAATAGGGTGCGCCAGTTAGTTGTGAACAGTAGTTTGCGCTAAGTAAAGGGT
AGTGGCTCTATGTGCCACTAGTCCGTTCTCGAGTTAGTTAGTTCCTGGTTGTTAATCTATTGATC
TAGTCCATATGAAGTTTAGCTCTCTGTTCCCTACCTAGTAAGTTAGTAAGTCCAGCTCTTGGGTT
TGCTAAGGTTTCTCTTTGGATGGGGTTTCTCTTAGTCCCGCGGCG
Found at i:617375 original size:13 final size:13
Alignment explanation
Indices: 617359--617397 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
617349 TTTCTCTTAG
617359 GCTTTTATCTGAA
1 GCTTTTATCTGAA
617372 GCTTTTATCTGAA
1 GCTTTTATCTGAA
617385 GCTTTTATCTGAA
1 GCTTTTATCTGAA
617398 ATAGTAGCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
GCTTTTATCTGAA
Left flanking sequence: Indices 616859 -- 617358
TAGTAAGTCCAGCTCTTGGGTTTGCTAAGGTTTCTCTTTGGATGGGGTTTCTCTTAGTCCCGCGG
CGTAGTTTCATTCTATTTATATGGGTAACAGGCTTCCGTTAGTGGTCAGATGGTAGTTGCAAGTT
TTTGTCTCCAATTTCATATGCGGATAGGGAAGAGAGATAGTTAGGGATTTATTGCTCGACTGTTA
AGGAGCGGTTTTTATCTCTCGACCGAAAAAAGAGGTATGAAGGTGTAAGACTTACAGGAGAGGTA
TTCTTGTGCTCCACTCTCTAAGGAGAGGTACTTTTACTCAATCAACGGACAGTGTTGAACATATT
CTTGAGTATTGATGCCCGGAAATAGGACATATGACGGACTTTCCAATCCAAAAGGGGATAACAGG
GAATAGACTAAGCAATCCTGGGACCAAGTTTCAGTTTCATGATAGACAGGACAGCGGAAGACACC
GGAATACAGGAAAATACTCAGAAATAGGGGGATCTTTTCTCTTAG
Right flanking sequence: Indices 617398 -- 617897
ATAGTAGCTCGTTCACAGTACGTGGTGTTCGAGAATGCCTGGTTTCGGTTTTTGCCAGGCAACAT
CAGGTCTTCGAACCTGCGGGTTTGAATTAGGTTTCTATTCTAAGTGGGGTTCATAACCAATTTGA
AGGGGGTCGCGACTTACAGCGGCTACTCTAGCTTACGAGTTCCACGAAGTCAAGCGGCTAGGCTG
CTAAAGAAAGAGGATAGCTACAGAGAATATAGCGGAAGAGAAGATAGCTGCAGTTAAAGAAGATA
GCTACAGATAGAGAAGATAGCTACAGATAGAACTAGTAGATAGAACAGAACTAGTAGGACTAGAT
AGATAGATAGAACTAGATAGATTGTTTAATTATAGGATTGGTTAATAGATTGATAACGGTAATAT
GAGATGAGTGAGTTCCTTGTTTTCTCTAGTGAATTAGTAAGGTTTACCGGAACTTTTGTCTTAGG
GAGTTAATAGACACTATAGTCCATAGAGAGTAGTCAACTAGTATA
Found at i:617687 original size:19 final size:19
Alignment explanation
Indices: 617629--617688 Score: 93
Period size: 19 Copynumber: 3.2 Consensus size: 19
617619 ATATAGCGGA
* *
617629 AGAGAAGATAGCTGCAGTT
1 AGAGAAGATAGCTACAGAT
*
617648 AAAGAAGATAGCTACAGAT
1 AGAGAAGATAGCTACAGAT
617667 AGAGAAGATAGCTACAGAT
1 AGAGAAGATAGCTACAGAT
617686 AGA
1 AGA
617689 ACTAGTAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 37 1.00
ACGTcount: A:0.47, C:0.10, G:0.27, T:0.17
Consensus pattern (19 bp):
AGAGAAGATAGCTACAGAT
Left flanking sequence: Indices 617129 -- 617628
CCACTCTCTAAGGAGAGGTACTTTTACTCAATCAACGGACAGTGTTGAACATATTCTTGAGTATT
GATGCCCGGAAATAGGACATATGACGGACTTTCCAATCCAAAAGGGGATAACAGGGAATAGACTA
AGCAATCCTGGGACCAAGTTTCAGTTTCATGATAGACAGGACAGCGGAAGACACCGGAATACAGG
AAAATACTCAGAAATAGGGGGATCTTTTCTCTTAGGCTTTTATCTGAAGCTTTTATCTGAAGCTT
TTATCTGAAATAGTAGCTCGTTCACAGTACGTGGTGTTCGAGAATGCCTGGTTTCGGTTTTTGCC
AGGCAACATCAGGTCTTCGAACCTGCGGGTTTGAATTAGGTTTCTATTCTAAGTGGGGTTCATAA
CCAATTTGAAGGGGGTCGCGACTTACAGCGGCTACTCTAGCTTACGAGTTCCACGAAGTCAAGCG
GCTAGGCTGCTAAAGAAAGAGGATAGCTACAGAGAATATAGCGGA
Right flanking sequence: Indices 617689 -- 618188
ACTAGTAGATAGAACAGAACTAGTAGGACTAGATAGATAGATAGAACTAGATAGATTGTTTAATT
ATAGGATTGGTTAATAGATTGATAACGGTAATATGAGATGAGTGAGTTCCTTGTTTTCTCTAGTG
AATTAGTAAGGTTTACCGGAACTTTTGTCTTAGGGAGTTAATAGACACTATAGTCCATAGAGAGT
AGTCAACTAGTATAGTACGTTTGGTAGCTAGAATTCCAGTAATGTTGTGAAACTAAGGAATACAG
TTAGTTAGTTCTTTGTTCTGGTCAGCTCAGTAGAGTATTACATGTCAGCTCTAGCTAATCTTTCT
ATCTAGAATAGATAATTCTCATTCTTTTGTCAGCTAAGTCAACCAAGTCAATGTCAGCTAGTAAA
CCAAGTCAATGTCAGCTACTCTGTAAAGTAAGCCGGTCAATTGTGAAACAAAGCAAGCTCCAAGC
ACAAGGCAAGAGCAACGTACTAGATATGTTGTACTAGATATGTTC
Found at i:618105 original size:27 final size:23
Alignment explanation
Indices: 618041--618096 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
618031 CTCATTCTTT
*
618041 TGTCAGCTAAGTCAACCAAGTCAA
1 TGTCAGCT-AGTAAACCAAGTCAA
618065 TGTCAGCTAGTAAACCAAGTCAA
1 TGTCAGCTAGTAAACCAAGTCAA
618088 TGTCAGCTA
1 TGTCAGCTA
618097 CTCTGTAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.74
24 8 0.26
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (23 bp):
TGTCAGCTAGTAAACCAAGTCAA
Left flanking sequence: Indices 617541 -- 618040
TTACAGCGGCTACTCTAGCTTACGAGTTCCACGAAGTCAAGCGGCTAGGCTGCTAAAGAAAGAGG
ATAGCTACAGAGAATATAGCGGAAGAGAAGATAGCTGCAGTTAAAGAAGATAGCTACAGATAGAG
AAGATAGCTACAGATAGAACTAGTAGATAGAACAGAACTAGTAGGACTAGATAGATAGATAGAAC
TAGATAGATTGTTTAATTATAGGATTGGTTAATAGATTGATAACGGTAATATGAGATGAGTGAGT
TCCTTGTTTTCTCTAGTGAATTAGTAAGGTTTACCGGAACTTTTGTCTTAGGGAGTTAATAGACA
CTATAGTCCATAGAGAGTAGTCAACTAGTATAGTACGTTTGGTAGCTAGAATTCCAGTAATGTTG
TGAAACTAAGGAATACAGTTAGTTAGTTCTTTGTTCTGGTCAGCTCAGTAGAGTATTACATGTCA
GCTCTAGCTAATCTTTCTATCTAGAATAGATAATTCTCATTCTTT
Right flanking sequence: Indices 618097 -- 618596
CTCTGTAAAGTAAGCCGGTCAATTGTGAAACAAAGCAAGCTCCAAGCACAAGGCAAGAGCAACGT
ACTAGATATGTTGTACTAGATATGTTCTAGTAGATGGGTTAGAGGTTCTAGGTAGGTTTTCGGCG
TATGATGGTTTACCTATATACAACGGTAGGTAATACTTCGTTAGTAGAGATCAGACTTTTGACGC
TAGGTGATAATAGAATGATAACGGTAATATCAATATCCGTTAGTTTTGTTCCTGAGTTACATCTA
TCAACGAAGCTACTTTGTTTCCTGCCGGGTTTCTCTTAGTAGTTAGGTTTCTCTTAGTAGTTATA
CAGGGTAGCTCAACTCCTGCCGTTTCTATTAGTACGGTTCTAGATAGTTACGGTAATAGCTCTCT
ACTCTAATAGTTTAGTATAGGGTTCCGCTCTTTCTTTGATTTTCTGTAATAGCTTACTATAGTCC
ATATCAGTTAGTTCCTCAGTTCCGTAGTTGGGAGTTTGCGGGTTT
Found at i:618179 original size:14 final size:14
Alignment explanation
Indices: 618160--618187 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
618150 CAAGAGCAAC
618160 GTACTAGATATGTT
1 GTACTAGATATGTT
618174 GTACTAGATATGTT
1 GTACTAGATATGTT
618188 CTAGTAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
GTACTAGATATGTT
Left flanking sequence: Indices 617660 -- 618159
TACAGATAGAGAAGATAGCTACAGATAGAACTAGTAGATAGAACAGAACTAGTAGGACTAGATAG
ATAGATAGAACTAGATAGATTGTTTAATTATAGGATTGGTTAATAGATTGATAACGGTAATATGA
GATGAGTGAGTTCCTTGTTTTCTCTAGTGAATTAGTAAGGTTTACCGGAACTTTTGTCTTAGGGA
GTTAATAGACACTATAGTCCATAGAGAGTAGTCAACTAGTATAGTACGTTTGGTAGCTAGAATTC
CAGTAATGTTGTGAAACTAAGGAATACAGTTAGTTAGTTCTTTGTTCTGGTCAGCTCAGTAGAGT
ATTACATGTCAGCTCTAGCTAATCTTTCTATCTAGAATAGATAATTCTCATTCTTTTGTCAGCTA
AGTCAACCAAGTCAATGTCAGCTAGTAAACCAAGTCAATGTCAGCTACTCTGTAAAGTAAGCCGG
TCAATTGTGAAACAAAGCAAGCTCCAAGCACAAGGCAAGAGCAAC
Right flanking sequence: Indices 618188 -- 618687
CTAGTAGATGGGTTAGAGGTTCTAGGTAGGTTTTCGGCGTATGATGGTTTACCTATATACAACGG
TAGGTAATACTTCGTTAGTAGAGATCAGACTTTTGACGCTAGGTGATAATAGAATGATAACGGTA
ATATCAATATCCGTTAGTTTTGTTCCTGAGTTACATCTATCAACGAAGCTACTTTGTTTCCTGCC
GGGTTTCTCTTAGTAGTTAGGTTTCTCTTAGTAGTTATACAGGGTAGCTCAACTCCTGCCGTTTC
TATTAGTACGGTTCTAGATAGTTACGGTAATAGCTCTCTACTCTAATAGTTTAGTATAGGGTTCC
GCTCTTTCTTTGATTTTCTGTAATAGCTTACTATAGTCCATATCAGTTAGTTCCTCAGTTCCGTA
GTTGGGAGTTTGCGGGTTTAGTTCTTGCGGTAGTTAGTTTCGTTGTCGTTGGTTTCGTTGTCGTT
TGTTTCGTTGCACTAGTTAGTATACAACTACAATAGTGTTGCTAC
Found at i:618195 original size:14 final size:14
Alignment explanation
Indices: 618161--618196 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
618151 AAGAGCAACG
*
618161 TACTAGATATGTTG
1 TACTAGATATGTTC
618175 TACTAGATATGTTC
1 TACTAGATATGTTC
*
618189 TAGTAGAT
1 TACTAGAT
618197 GGGTTAGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (14 bp):
TACTAGATATGTTC
Left flanking sequence: Indices 617661 -- 618160
ACAGATAGAGAAGATAGCTACAGATAGAACTAGTAGATAGAACAGAACTAGTAGGACTAGATAGA
TAGATAGAACTAGATAGATTGTTTAATTATAGGATTGGTTAATAGATTGATAACGGTAATATGAG
ATGAGTGAGTTCCTTGTTTTCTCTAGTGAATTAGTAAGGTTTACCGGAACTTTTGTCTTAGGGAG
TTAATAGACACTATAGTCCATAGAGAGTAGTCAACTAGTATAGTACGTTTGGTAGCTAGAATTCC
AGTAATGTTGTGAAACTAAGGAATACAGTTAGTTAGTTCTTTGTTCTGGTCAGCTCAGTAGAGTA
TTACATGTCAGCTCTAGCTAATCTTTCTATCTAGAATAGATAATTCTCATTCTTTTGTCAGCTAA
GTCAACCAAGTCAATGTCAGCTAGTAAACCAAGTCAATGTCAGCTACTCTGTAAAGTAAGCCGGT
CAATTGTGAAACAAAGCAAGCTCCAAGCACAAGGCAAGAGCAACG
Right flanking sequence: Indices 618197 -- 618696
GGGTTAGAGGTTCTAGGTAGGTTTTCGGCGTATGATGGTTTACCTATATACAACGGTAGGTAATA
CTTCGTTAGTAGAGATCAGACTTTTGACGCTAGGTGATAATAGAATGATAACGGTAATATCAATA
TCCGTTAGTTTTGTTCCTGAGTTACATCTATCAACGAAGCTACTTTGTTTCCTGCCGGGTTTCTC
TTAGTAGTTAGGTTTCTCTTAGTAGTTATACAGGGTAGCTCAACTCCTGCCGTTTCTATTAGTAC
GGTTCTAGATAGTTACGGTAATAGCTCTCTACTCTAATAGTTTAGTATAGGGTTCCGCTCTTTCT
TTGATTTTCTGTAATAGCTTACTATAGTCCATATCAGTTAGTTCCTCAGTTCCGTAGTTGGGAGT
TTGCGGGTTTAGTTCTTGCGGTAGTTAGTTTCGTTGTCGTTGGTTTCGTTGTCGTTTGTTTCGTT
GCACTAGTTAGTATACAACTACAATAGTGTTGCTACCGGACTATC
Found at i:618407 original size:18 final size:18
Alignment explanation
Indices: 618384--618419 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
618374 TTTCCTGCCG
618384 GGTTTCTCTTAGTAGTTA
1 GGTTTCTCTTAGTAGTTA
618402 GGTTTCTCTTAGTAGTTA
1 GGTTTCTCTTAGTAGTTA
618420 TACAGGGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.22, T:0.50
Consensus pattern (18 bp):
GGTTTCTCTTAGTAGTTA
Left flanking sequence: Indices 617884 -- 618383
AGTCAACTAGTATAGTACGTTTGGTAGCTAGAATTCCAGTAATGTTGTGAAACTAAGGAATACAG
TTAGTTAGTTCTTTGTTCTGGTCAGCTCAGTAGAGTATTACATGTCAGCTCTAGCTAATCTTTCT
ATCTAGAATAGATAATTCTCATTCTTTTGTCAGCTAAGTCAACCAAGTCAATGTCAGCTAGTAAA
CCAAGTCAATGTCAGCTACTCTGTAAAGTAAGCCGGTCAATTGTGAAACAAAGCAAGCTCCAAGC
ACAAGGCAAGAGCAACGTACTAGATATGTTGTACTAGATATGTTCTAGTAGATGGGTTAGAGGTT
CTAGGTAGGTTTTCGGCGTATGATGGTTTACCTATATACAACGGTAGGTAATACTTCGTTAGTAG
AGATCAGACTTTTGACGCTAGGTGATAATAGAATGATAACGGTAATATCAATATCCGTTAGTTTT
GTTCCTGAGTTACATCTATCAACGAAGCTACTTTGTTTCCTGCCG
Right flanking sequence: Indices 618420 -- 618919
TACAGGGTAGCTCAACTCCTGCCGTTTCTATTAGTACGGTTCTAGATAGTTACGGTAATAGCTCT
CTACTCTAATAGTTTAGTATAGGGTTCCGCTCTTTCTTTGATTTTCTGTAATAGCTTACTATAGT
CCATATCAGTTAGTTCCTCAGTTCCGTAGTTGGGAGTTTGCGGGTTTAGTTCTTGCGGTAGTTAG
TTTCGTTGTCGTTGGTTTCGTTGTCGTTTGTTTCGTTGCACTAGTTAGTATACAACTACAATAGT
GTTGCTACCGGACTATCCAACTCCAAGGGTTAGTCCATTCCATGGTTCGTTTCTAGCTAGTATAG
TCCATAAATAGTAAATAGGTAGTAGTTTGAAGTAAACTATAACGGATAGGTAGTCCATATACGTT
AGTTTAGTTCCTTCGTCTATCAACTTCACTACTTTGTTCCTTCGTCTATCTTATCAACGAAGCGA
CTTACTTTGTTCCAGAGTCTATCAACGAAGCGACTTACTTTGTTC
Found at i:618634 original size:15 final size:15
Alignment explanation
Indices: 618614--618652 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
618604 GCGGTAGTTA
618614 GTTTCGTTGTCGTTG
1 GTTTCGTTGTCGTTG
*
618629 GTTTCGTTGTCGTTT
1 GTTTCGTTGTCGTTG
618644 GTTTCGTTG
1 GTTTCGTTG
618653 CACTAGTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.00, C:0.13, G:0.31, T:0.56
Consensus pattern (15 bp):
GTTTCGTTGTCGTTG
Left flanking sequence: Indices 618114 -- 618613
GTCAATTGTGAAACAAAGCAAGCTCCAAGCACAAGGCAAGAGCAACGTACTAGATATGTTGTACT
AGATATGTTCTAGTAGATGGGTTAGAGGTTCTAGGTAGGTTTTCGGCGTATGATGGTTTACCTAT
ATACAACGGTAGGTAATACTTCGTTAGTAGAGATCAGACTTTTGACGCTAGGTGATAATAGAATG
ATAACGGTAATATCAATATCCGTTAGTTTTGTTCCTGAGTTACATCTATCAACGAAGCTACTTTG
TTTCCTGCCGGGTTTCTCTTAGTAGTTAGGTTTCTCTTAGTAGTTATACAGGGTAGCTCAACTCC
TGCCGTTTCTATTAGTACGGTTCTAGATAGTTACGGTAATAGCTCTCTACTCTAATAGTTTAGTA
TAGGGTTCCGCTCTTTCTTTGATTTTCTGTAATAGCTTACTATAGTCCATATCAGTTAGTTCCTC
AGTTCCGTAGTTGGGAGTTTGCGGGTTTAGTTCTTGCGGTAGTTA
Right flanking sequence: Indices 618653 -- 619152
CACTAGTTAGTATACAACTACAATAGTGTTGCTACCGGACTATCCAACTCCAAGGGTTAGTCCAT
TCCATGGTTCGTTTCTAGCTAGTATAGTCCATAAATAGTAAATAGGTAGTAGTTTGAAGTAAACT
ATAACGGATAGGTAGTCCATATACGTTAGTTTAGTTCCTTCGTCTATCAACTTCACTACTTTGTT
CCTTCGTCTATCTTATCAACGAAGCGACTTACTTTGTTCCAGAGTCTATCAACGAAGCGACTTAC
TTTGTTCCTTCGTTAGTTCCTTGGGTTAGCTAAGGGTTGGGTTCCCTTTACTAGGGTTAGCTAAG
GGTTACCTTTGGTTTGTCTTCGTCCGGTAATAAATATCTAGTATAGTCTATAGAGGTAGTTTCTC
TTAGTACGCTTATATCTAGTATAGGATAGATAATAGCTCTGTAATAATGAGTTGCGGGTATATCC
ATACCTGTAGCTAATGGATATGGTCCATATTGGTTAGTTTCTTTG
Found at i:618883 original size:38 final size:36
Alignment explanation
Indices: 618839--618925 Score: 110
Period size: 33 Copynumber: 2.4 Consensus size: 36
618829 TCAACTTCAC
618839 TACTTTGTTCCTTCGTCTA-TCTTATCAACGAAGCGACT
1 TACTTTGTTCCTTCG--TAGTC-TATCAACGAAGCGACT
*
618877 TACTTTGTTCC--AG-AGTCTATCAACGAAGCGACT
1 TACTTTGTTCCTTCGTAGTCTATCAACGAAGCGACT
618910 TACTTTGTTCCTTCGT
1 TACTTTGTTCCTTCGT
618926 TAGTTCCTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
33 28 0.65
34 2 0.05
35 1 0.02
36 1 0.02
38 11 0.26
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (36 bp):
TACTTTGTTCCTTCGTAGTCTATCAACGAAGCGACT
Left flanking sequence: Indices 618339 -- 618838
GTTCCTGAGTTACATCTATCAACGAAGCTACTTTGTTTCCTGCCGGGTTTCTCTTAGTAGTTAGG
TTTCTCTTAGTAGTTATACAGGGTAGCTCAACTCCTGCCGTTTCTATTAGTACGGTTCTAGATAG
TTACGGTAATAGCTCTCTACTCTAATAGTTTAGTATAGGGTTCCGCTCTTTCTTTGATTTTCTGT
AATAGCTTACTATAGTCCATATCAGTTAGTTCCTCAGTTCCGTAGTTGGGAGTTTGCGGGTTTAG
TTCTTGCGGTAGTTAGTTTCGTTGTCGTTGGTTTCGTTGTCGTTTGTTTCGTTGCACTAGTTAGT
ATACAACTACAATAGTGTTGCTACCGGACTATCCAACTCCAAGGGTTAGTCCATTCCATGGTTCG
TTTCTAGCTAGTATAGTCCATAAATAGTAAATAGGTAGTAGTTTGAAGTAAACTATAACGGATAG
GTAGTCCATATACGTTAGTTTAGTTCCTTCGTCTATCAACTTCAC
Right flanking sequence: Indices 618926 -- 619425
TAGTTCCTTGGGTTAGCTAAGGGTTGGGTTCCCTTTACTAGGGTTAGCTAAGGGTTACCTTTGGT
TTGTCTTCGTCCGGTAATAAATATCTAGTATAGTCTATAGAGGTAGTTTCTCTTAGTACGCTTAT
ATCTAGTATAGGATAGATAATAGCTCTGTAATAATGAGTTGCGGGTATATCCATACCTGTAGCTA
ATGGATATGGTCCATATTGGTTAGTTTCTTTGTTCCTGATTAGTTCCTTTCCTTATTGGTTAGTT
CCTTTCCTTATTGGTTAGTTTCTTTCCTTTGTTCCTGATTAGATACGGGATGAGTTTCTCTATTA
GTTCCTTTCCTTTGTTCCTGATTAGATACAAGGGATGGGATGGAATGAGTTTCTCTATTCTCTAG
GTAGTTTGTTTATAAGGTATATACAACGGTAATATGAGATGAGGTATAGCTCTTTGTTCCGTTCC
CTATTGAGTTGCTAAGGTTTGGTTCCCGGCACTGGCACTTTCTCT
Found at i:619215 original size:25 final size:20
Alignment explanation
Indices: 619160--619214 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
619150 TTGTTCCTGA
619160 TTAGTTCCTTTCCTTATTGG
1 TTAGTTCCTTTCCTTATTGG
619180 TTAGTTCCTTTCCTTATTGG
1 TTAGTTCCTTTCCTTATTGG
*
619200 TTAGTTTCTTTCCTT
1 TTAGTTCCTTTCCTT
619215 TGTTCCTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.09, C:0.20, G:0.13, T:0.58
Consensus pattern (20 bp):
TTAGTTCCTTTCCTTATTGG
Left flanking sequence: Indices 618660 -- 619159
TAGTATACAACTACAATAGTGTTGCTACCGGACTATCCAACTCCAAGGGTTAGTCCATTCCATGG
TTCGTTTCTAGCTAGTATAGTCCATAAATAGTAAATAGGTAGTAGTTTGAAGTAAACTATAACGG
ATAGGTAGTCCATATACGTTAGTTTAGTTCCTTCGTCTATCAACTTCACTACTTTGTTCCTTCGT
CTATCTTATCAACGAAGCGACTTACTTTGTTCCAGAGTCTATCAACGAAGCGACTTACTTTGTTC
CTTCGTTAGTTCCTTGGGTTAGCTAAGGGTTGGGTTCCCTTTACTAGGGTTAGCTAAGGGTTACC
TTTGGTTTGTCTTCGTCCGGTAATAAATATCTAGTATAGTCTATAGAGGTAGTTTCTCTTAGTAC
GCTTATATCTAGTATAGGATAGATAATAGCTCTGTAATAATGAGTTGCGGGTATATCCATACCTG
TAGCTAATGGATATGGTCCATATTGGTTAGTTTCTTTGTTCCTGA
Right flanking sequence: Indices 619215 -- 619714
TGTTCCTGATTAGATACGGGATGAGTTTCTCTATTAGTTCCTTTCCTTTGTTCCTGATTAGATAC
AAGGGATGGGATGGAATGAGTTTCTCTATTCTCTAGGTAGTTTGTTTATAAGGTATATACAACGG
TAATATGAGATGAGGTATAGCTCTTTGTTCCGTTCCCTATTGAGTTGCTAAGGTTTGGTTCCCGG
CACTGGCACTTTCTCTTAGGGAGTTAATAGCTAGTATAGTCCATAGCATAGTGTATATACAACGG
TAATGGTCCGTTTCTCAGTAGTGTAGTAAGGTGGAGCTAGTATTACAGGTATGTAACTGGAGCGA
GTCAACCAAGCCAATGTCAGCTAGTATTACAAGGAAAGAGAAGGAAGTGGCGAAAGAGAAGGAAG
TGGGTTGACAGTTGTGAAAGAAAGGAAGTAGTAGCGTAGTGAGTTAGTATAGGGGTGTGCTCACT
CAGGTAGTGGCTAGTTCCAACGATAGTCGTTTTCAGTTAACTACT
Found at i:619596 original size:18 final size:18
Alignment explanation
Indices: 619573--619607 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
619563 GTATTACAAG
619573 GAAAGAGAAGGAAGTGGC
1 GAAAGAGAAGGAAGTGGC
619591 GAAAGAGAAGGAAGTGG
1 GAAAGAGAAGGAAGTGG
619608 GTTGACAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.46, T:0.06
Consensus pattern (18 bp):
GAAAGAGAAGGAAGTGGC
Left flanking sequence: Indices 619073 -- 619572
TAATAGCTCTGTAATAATGAGTTGCGGGTATATCCATACCTGTAGCTAATGGATATGGTCCATAT
TGGTTAGTTTCTTTGTTCCTGATTAGTTCCTTTCCTTATTGGTTAGTTCCTTTCCTTATTGGTTA
GTTTCTTTCCTTTGTTCCTGATTAGATACGGGATGAGTTTCTCTATTAGTTCCTTTCCTTTGTTC
CTGATTAGATACAAGGGATGGGATGGAATGAGTTTCTCTATTCTCTAGGTAGTTTGTTTATAAGG
TATATACAACGGTAATATGAGATGAGGTATAGCTCTTTGTTCCGTTCCCTATTGAGTTGCTAAGG
TTTGGTTCCCGGCACTGGCACTTTCTCTTAGGGAGTTAATAGCTAGTATAGTCCATAGCATAGTG
TATATACAACGGTAATGGTCCGTTTCTCAGTAGTGTAGTAAGGTGGAGCTAGTATTACAGGTATG
TAACTGGAGCGAGTCAACCAAGCCAATGTCAGCTAGTATTACAAG
Right flanking sequence: Indices 619608 -- 620107
GTTGACAGTTGTGAAAGAAAGGAAGTAGTAGCGTAGTGAGTTAGTATAGGGGTGTGCTCACTCAG
GTAGTGGCTAGTTCCAACGATAGTCGTTTTCAGTTAACTACTATAGATAGATAGTCCGATAGCTA
GTATTACAGGATAGATAGATAGTCCGATAGCTAGTATTCCTTACATGTAGTTCCCGGTTAATACA
GTTAGTAAAGTAAGTCAATATAGTTAGTAAGTCAATCCAGTTAGTAAAGTAAGTCAATCCAGTTG
TTCTTGTTACAGGTGAGCTAGTCAACTAAGGAATGGTGTAAGGAATGAAATGAATGGTGTAATCC
ATGAATAAGGAATGAATAGTGTAAGGAATGAATAAGCCATGAATAGTGTAAGGAATGAATAAGCC
ATGAATAGTGTAAGGAATGAATAAGGAATGAATAATCCATGAATGTTGTAAGGAATGAATGTTGT
TTCCGGTCAAACCAGTTGTTCTCGGTCAATACAGTTACAGTTGTT
Found at i:619822 original size:22 final size:22
Alignment explanation
Indices: 619801--619866 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
619791 CCGGTTAATA
619801 CAGTTAGTAAAGTAAGTCAAT-
1 CAGTTAGTAAAGTAAGTCAATC
*
619822 -A--TAGT-TAGTAAGTCAATC
1 CAGTTAGTAAAGTAAGTCAATC
619840 CAGTTAGTAAAGTAAGTCAATC
1 CAGTTAGTAAAGTAAGTCAATC
619862 CAGTT
1 CAGTT
619867 GTTCTTGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 11 0.29
18 4 0.11
19 1 0.03
20 1 0.03
21 4 0.11
22 17 0.45
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (22 bp):
CAGTTAGTAAAGTAAGTCAATC
Left flanking sequence: Indices 619301 -- 619800
TTCTCTATTCTCTAGGTAGTTTGTTTATAAGGTATATACAACGGTAATATGAGATGAGGTATAGC
TCTTTGTTCCGTTCCCTATTGAGTTGCTAAGGTTTGGTTCCCGGCACTGGCACTTTCTCTTAGGG
AGTTAATAGCTAGTATAGTCCATAGCATAGTGTATATACAACGGTAATGGTCCGTTTCTCAGTAG
TGTAGTAAGGTGGAGCTAGTATTACAGGTATGTAACTGGAGCGAGTCAACCAAGCCAATGTCAGC
TAGTATTACAAGGAAAGAGAAGGAAGTGGCGAAAGAGAAGGAAGTGGGTTGACAGTTGTGAAAGA
AAGGAAGTAGTAGCGTAGTGAGTTAGTATAGGGGTGTGCTCACTCAGGTAGTGGCTAGTTCCAAC
GATAGTCGTTTTCAGTTAACTACTATAGATAGATAGTCCGATAGCTAGTATTACAGGATAGATAG
ATAGTCCGATAGCTAGTATTCCTTACATGTAGTTCCCGGTTAATA
Right flanking sequence: Indices 619867 -- 620366
GTTCTTGTTACAGGTGAGCTAGTCAACTAAGGAATGGTGTAAGGAATGAAATGAATGGTGTAATC
CATGAATAAGGAATGAATAGTGTAAGGAATGAATAAGCCATGAATAGTGTAAGGAATGAATAAGC
CATGAATAGTGTAAGGAATGAATAAGGAATGAATAATCCATGAATGTTGTAAGGAATGAATGTTG
TTTCCGGTCAAACCAGTTGTTCTCGGTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAATACA
GTTACAGTTGTTGTTGTTCTCGCTCAGGTCAGAGGAGACGGGATGTAACCTGTAGCTAAGCCCCC
TAAGTTTGAGGGGACTGCAGCTAATACTAATACGAATAAAGTGCCGGTACTAGTTAGTTAGTTCC
CTTTCCTTGGTATAGTACGTCTGTATAACCTAATCTAGTTCTCTTGTTGATGTATATATAACCTA
ACCTAGTGGCACTTGTTGATGTATATATAACCTAGATAATGGATT
Found at i:619833 original size:17 final size:17
Alignment explanation
Indices: 619811--619849 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
619801 CAGTTAGTAA
*
619811 AGTAAGTCAATATAGTT
1 AGTAAGTCAATACAGTT
*
619828 AGTAAGTCAATCCAGTT
1 AGTAAGTCAATACAGTT
619845 AGTAA
1 AGTAA
619850 AGTAAGTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (17 bp):
AGTAAGTCAATACAGTT
Left flanking sequence: Indices 619311 -- 619810
TCTAGGTAGTTTGTTTATAAGGTATATACAACGGTAATATGAGATGAGGTATAGCTCTTTGTTCC
GTTCCCTATTGAGTTGCTAAGGTTTGGTTCCCGGCACTGGCACTTTCTCTTAGGGAGTTAATAGC
TAGTATAGTCCATAGCATAGTGTATATACAACGGTAATGGTCCGTTTCTCAGTAGTGTAGTAAGG
TGGAGCTAGTATTACAGGTATGTAACTGGAGCGAGTCAACCAAGCCAATGTCAGCTAGTATTACA
AGGAAAGAGAAGGAAGTGGCGAAAGAGAAGGAAGTGGGTTGACAGTTGTGAAAGAAAGGAAGTAG
TAGCGTAGTGAGTTAGTATAGGGGTGTGCTCACTCAGGTAGTGGCTAGTTCCAACGATAGTCGTT
TTCAGTTAACTACTATAGATAGATAGTCCGATAGCTAGTATTACAGGATAGATAGATAGTCCGAT
AGCTAGTATTCCTTACATGTAGTTCCCGGTTAATACAGTTAGTAA
Right flanking sequence: Indices 619850 -- 620349
AGTAAGTCAATCCAGTTGTTCTTGTTACAGGTGAGCTAGTCAACTAAGGAATGGTGTAAGGAATG
AAATGAATGGTGTAATCCATGAATAAGGAATGAATAGTGTAAGGAATGAATAAGCCATGAATAGT
GTAAGGAATGAATAAGCCATGAATAGTGTAAGGAATGAATAAGGAATGAATAATCCATGAATGTT
GTAAGGAATGAATGTTGTTTCCGGTCAAACCAGTTGTTCTCGGTCAATACAGTTACAGTTGTTGT
TGTTCTCGCTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAGGTCAGAGGAGACGGGATGTAA
CCTGTAGCTAAGCCCCCTAAGTTTGAGGGGACTGCAGCTAATACTAATACGAATAAAGTGCCGGT
ACTAGTTAGTTAGTTCCCTTTCCTTGGTATAGTACGTCTGTATAACCTAATCTAGTTCTCTTGTT
GATGTATATATAACCTAACCTAGTGGCACTTGTTGATGTATATAT
Found at i:619946 original size:27 final size:27
Alignment explanation
Indices: 619933--620031 Score: 162
Period size: 27 Copynumber: 3.7 Consensus size: 27
619923 GGTGTAATCC
*
619933 ATGAATAAGGAATGAATAGTGTAAGGA
1 ATGAATAAGCAATGAATAGTGTAAGGA
*
619960 ATGAATAAGCCATGAATAGTGTAAGGA
1 ATGAATAAGCAATGAATAGTGTAAGGA
*
619987 ATGAATAAGCCATGAATAGTGTAAGGA
1 ATGAATAAGCAATGAATAGTGTAAGGA
*
620014 ATGAATAAGGAATGAATA
1 ATGAATAAGCAATGAATA
620032 ATCCATGAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.47, C:0.04, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGAATAAGCAATGAATAGTGTAAGGA
Left flanking sequence: Indices 619433 -- 619932
TTAATAGCTAGTATAGTCCATAGCATAGTGTATATACAACGGTAATGGTCCGTTTCTCAGTAGTG
TAGTAAGGTGGAGCTAGTATTACAGGTATGTAACTGGAGCGAGTCAACCAAGCCAATGTCAGCTA
GTATTACAAGGAAAGAGAAGGAAGTGGCGAAAGAGAAGGAAGTGGGTTGACAGTTGTGAAAGAAA
GGAAGTAGTAGCGTAGTGAGTTAGTATAGGGGTGTGCTCACTCAGGTAGTGGCTAGTTCCAACGA
TAGTCGTTTTCAGTTAACTACTATAGATAGATAGTCCGATAGCTAGTATTACAGGATAGATAGAT
AGTCCGATAGCTAGTATTCCTTACATGTAGTTCCCGGTTAATACAGTTAGTAAAGTAAGTCAATA
TAGTTAGTAAGTCAATCCAGTTAGTAAAGTAAGTCAATCCAGTTGTTCTTGTTACAGGTGAGCTA
GTCAACTAAGGAATGGTGTAAGGAATGAAATGAATGGTGTAATCC
Right flanking sequence: Indices 620032 -- 620531
ATCCATGAATGTTGTAAGGAATGAATGTTGTTTCCGGTCAAACCAGTTGTTCTCGGTCAATACAG
TTACAGTTGTTGTTGTTCTCGCTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAGGTCAGAGG
AGACGGGATGTAACCTGTAGCTAAGCCCCCTAAGTTTGAGGGGACTGCAGCTAATACTAATACGA
ATAAAGTGCCGGTACTAGTTAGTTAGTTCCCTTTCCTTGGTATAGTACGTCTGTATAACCTAATC
TAGTTCTCTTGTTGATGTATATATAACCTAACCTAGTGGCACTTGTTGATGTATATATAACCTAG
ATAATGGATTGTATAGATGAGTGGTAACCTTCTTCCTTAATCTTTTCAGTATTCAACTAGTATAG
TATAGTACGTTTGGTAGCTATCATTCCAGTAATTTGGTAGCTATCATTCCAGTAATGTTCTTCAA
CAAAGGAATACAGTTAGTTAGTTCTTTGTTCCGGTCAGCTCAGTA
Found at i:619957 original size:16 final size:16
Alignment explanation
Indices: 619938--620020 Score: 60
Period size: 16 Copynumber: 5.8 Consensus size: 16
619928 AATCCATGAA
619938 TAAGGAATGAATAGTG
1 TAAGGAATGAATAGTG
619954 TAAGGAATG-A-A---
1 TAAGGAATGAATAGTG
**
619965 TAAGCCATGAATAGTG
1 TAAGGAATGAATAGTG
619981 TAAGGAATG-A-A---
1 TAAGGAATGAATAGTG
**
619992 TAAGCCATGAATAGTG
1 TAAGGAATGAATAGTG
620008 TAAGGAATGAATA
1 TAAGGAATGAATA
620021 AGGAATGAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 20
0.64 0.10 0.26
Matches are distributed among these distances:
11 14 0.29
12 2 0.04
13 2 0.04
14 2 0.04
15 2 0.04
16 27 0.55
ACGTcount: A:0.46, C:0.05, G:0.27, T:0.23
Consensus pattern (16 bp):
TAAGGAATGAATAGTG
Left flanking sequence: Indices 619438 -- 619937
AGCTAGTATAGTCCATAGCATAGTGTATATACAACGGTAATGGTCCGTTTCTCAGTAGTGTAGTA
AGGTGGAGCTAGTATTACAGGTATGTAACTGGAGCGAGTCAACCAAGCCAATGTCAGCTAGTATT
ACAAGGAAAGAGAAGGAAGTGGCGAAAGAGAAGGAAGTGGGTTGACAGTTGTGAAAGAAAGGAAG
TAGTAGCGTAGTGAGTTAGTATAGGGGTGTGCTCACTCAGGTAGTGGCTAGTTCCAACGATAGTC
GTTTTCAGTTAACTACTATAGATAGATAGTCCGATAGCTAGTATTACAGGATAGATAGATAGTCC
GATAGCTAGTATTCCTTACATGTAGTTCCCGGTTAATACAGTTAGTAAAGTAAGTCAATATAGTT
AGTAAGTCAATCCAGTTAGTAAAGTAAGTCAATCCAGTTGTTCTTGTTACAGGTGAGCTAGTCAA
CTAAGGAATGGTGTAAGGAATGAAATGAATGGTGTAATCCATGAA
Right flanking sequence: Indices 620021 -- 620520
AGGAATGAATAATCCATGAATGTTGTAAGGAATGAATGTTGTTTCCGGTCAAACCAGTTGTTCTC
GGTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAATACAGTTACAGTTGTTGTTGTTCTCGCT
CAGGTCAGAGGAGACGGGATGTAACCTGTAGCTAAGCCCCCTAAGTTTGAGGGGACTGCAGCTAA
TACTAATACGAATAAAGTGCCGGTACTAGTTAGTTAGTTCCCTTTCCTTGGTATAGTACGTCTGT
ATAACCTAATCTAGTTCTCTTGTTGATGTATATATAACCTAACCTAGTGGCACTTGTTGATGTAT
ATATAACCTAGATAATGGATTGTATAGATGAGTGGTAACCTTCTTCCTTAATCTTTTCAGTATTC
AACTAGTATAGTATAGTACGTTTGGTAGCTATCATTCCAGTAATTTGGTAGCTATCATTCCAGTA
ATGTTCTTCAACAAAGGAATACAGTTAGTTAGTTCTTTGTTCCGG
Found at i:620022 original size:11 final size:11
Alignment explanation
Indices: 620008--620032 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
619998 ATGAATAGTG
620008 TAAGGAATGAA
1 TAAGGAATGAA
620019 TAAGGAATGAA
1 TAAGGAATGAA
620030 TAA
1 TAA
620033 TCCATGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (11 bp):
TAAGGAATGAA
Left flanking sequence: Indices 619508 -- 620007
GAGCTAGTATTACAGGTATGTAACTGGAGCGAGTCAACCAAGCCAATGTCAGCTAGTATTACAAG
GAAAGAGAAGGAAGTGGCGAAAGAGAAGGAAGTGGGTTGACAGTTGTGAAAGAAAGGAAGTAGTA
GCGTAGTGAGTTAGTATAGGGGTGTGCTCACTCAGGTAGTGGCTAGTTCCAACGATAGTCGTTTT
CAGTTAACTACTATAGATAGATAGTCCGATAGCTAGTATTACAGGATAGATAGATAGTCCGATAG
CTAGTATTCCTTACATGTAGTTCCCGGTTAATACAGTTAGTAAAGTAAGTCAATATAGTTAGTAA
GTCAATCCAGTTAGTAAAGTAAGTCAATCCAGTTGTTCTTGTTACAGGTGAGCTAGTCAACTAAG
GAATGGTGTAAGGAATGAAATGAATGGTGTAATCCATGAATAAGGAATGAATAGTGTAAGGAATG
AATAAGCCATGAATAGTGTAAGGAATGAATAAGCCATGAATAGTG
Right flanking sequence: Indices 620033 -- 620532
TCCATGAATGTTGTAAGGAATGAATGTTGTTTCCGGTCAAACCAGTTGTTCTCGGTCAATACAGT
TACAGTTGTTGTTGTTCTCGCTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAGGTCAGAGGA
GACGGGATGTAACCTGTAGCTAAGCCCCCTAAGTTTGAGGGGACTGCAGCTAATACTAATACGAA
TAAAGTGCCGGTACTAGTTAGTTAGTTCCCTTTCCTTGGTATAGTACGTCTGTATAACCTAATCT
AGTTCTCTTGTTGATGTATATATAACCTAACCTAGTGGCACTTGTTGATGTATATATAACCTAGA
TAATGGATTGTATAGATGAGTGGTAACCTTCTTCCTTAATCTTTTCAGTATTCAACTAGTATAGT
ATAGTACGTTTGGTAGCTATCATTCCAGTAATTTGGTAGCTATCATTCCAGTAATGTTCTTCAAC
AAAGGAATACAGTTAGTTAGTTCTTTGTTCCGGTCAGCTCAGTAG
Found at i:620113 original size:31 final size:31
Alignment explanation
Indices: 620077--620152 Score: 143
Period size: 31 Copynumber: 2.5 Consensus size: 31
620067 GGTCAAACCA
*
620077 GTTGTTCTCGGTCAATACAGTTACAGTTGTT
1 GTTGTTCTCGCTCAATACAGTTACAGTTGTT
620108 GTTGTTCTCGCTCAATACAGTTACAGTTGTT
1 GTTGTTCTCGCTCAATACAGTTACAGTTGTT
620139 GTTGTTCTCGCTCA
1 GTTGTTCTCGCTCA
620153 GGTCAGAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.42
Consensus pattern (31 bp):
GTTGTTCTCGCTCAATACAGTTACAGTTGTT
Left flanking sequence: Indices 619577 -- 620076
GAGAAGGAAGTGGCGAAAGAGAAGGAAGTGGGTTGACAGTTGTGAAAGAAAGGAAGTAGTAGCGT
AGTGAGTTAGTATAGGGGTGTGCTCACTCAGGTAGTGGCTAGTTCCAACGATAGTCGTTTTCAGT
TAACTACTATAGATAGATAGTCCGATAGCTAGTATTACAGGATAGATAGATAGTCCGATAGCTAG
TATTCCTTACATGTAGTTCCCGGTTAATACAGTTAGTAAAGTAAGTCAATATAGTTAGTAAGTCA
ATCCAGTTAGTAAAGTAAGTCAATCCAGTTGTTCTTGTTACAGGTGAGCTAGTCAACTAAGGAAT
GGTGTAAGGAATGAAATGAATGGTGTAATCCATGAATAAGGAATGAATAGTGTAAGGAATGAATA
AGCCATGAATAGTGTAAGGAATGAATAAGCCATGAATAGTGTAAGGAATGAATAAGGAATGAATA
ATCCATGAATGTTGTAAGGAATGAATGTTGTTTCCGGTCAAACCA
Right flanking sequence: Indices 620153 -- 620652
GGTCAGAGGAGACGGGATGTAACCTGTAGCTAAGCCCCCTAAGTTTGAGGGGACTGCAGCTAATA
CTAATACGAATAAAGTGCCGGTACTAGTTAGTTAGTTCCCTTTCCTTGGTATAGTACGTCTGTAT
AACCTAATCTAGTTCTCTTGTTGATGTATATATAACCTAACCTAGTGGCACTTGTTGATGTATAT
ATAACCTAGATAATGGATTGTATAGATGAGTGGTAACCTTCTTCCTTAATCTTTTCAGTATTCAA
CTAGTATAGTATAGTACGTTTGGTAGCTATCATTCCAGTAATTTGGTAGCTATCATTCCAGTAAT
GTTCTTCAACAAAGGAATACAGTTAGTTAGTTCTTTGTTCCGGTCAGCTCAGTAGAGTAGGTTAG
GTCAGTTAAGCCCCCTAAGTATGAGTATGAGGGAACTGCTGCTAATAAAGAAAGAGAAGGAATGA
ATGGAAAGCTCGAGTCAAAAGAAGAGGGAATGTCGGCTACAGTTA
Found at i:620318 original size:33 final size:34
Alignment explanation
Indices: 620280--620355 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 34
620270 AGTACGTCTG
* * *
620280 TATAACCTAATCTAGT-TCTCTTGTTGATGTATA
1 TATAACCTAACCTAGTGGCACTTGTTGATGTATA
620313 TATAACCTAACCTAGTGGCACTTGTTGATGTATA
1 TATAACCTAACCTAGTGGCACTTGTTGATGTATA
620347 TATAACCTA
1 TATAACCTA
620356 GATAATGGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 15 0.38
34 24 0.62
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (34 bp):
TATAACCTAACCTAGTGGCACTTGTTGATGTATA
Left flanking sequence: Indices 619780 -- 620279
ACATGTAGTTCCCGGTTAATACAGTTAGTAAAGTAAGTCAATATAGTTAGTAAGTCAATCCAGTT
AGTAAAGTAAGTCAATCCAGTTGTTCTTGTTACAGGTGAGCTAGTCAACTAAGGAATGGTGTAAG
GAATGAAATGAATGGTGTAATCCATGAATAAGGAATGAATAGTGTAAGGAATGAATAAGCCATGA
ATAGTGTAAGGAATGAATAAGCCATGAATAGTGTAAGGAATGAATAAGGAATGAATAATCCATGA
ATGTTGTAAGGAATGAATGTTGTTTCCGGTCAAACCAGTTGTTCTCGGTCAATACAGTTACAGTT
GTTGTTGTTCTCGCTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAGGTCAGAGGAGACGGGA
TGTAACCTGTAGCTAAGCCCCCTAAGTTTGAGGGGACTGCAGCTAATACTAATACGAATAAAGTG
CCGGTACTAGTTAGTTAGTTCCCTTTCCTTGGTATAGTACGTCTG
Right flanking sequence: Indices 620356 -- 620855
GATAATGGATTGTATAGATGAGTGGTAACCTTCTTCCTTAATCTTTTCAGTATTCAACTAGTATA
GTATAGTACGTTTGGTAGCTATCATTCCAGTAATTTGGTAGCTATCATTCCAGTAATGTTCTTCA
ACAAAGGAATACAGTTAGTTAGTTCTTTGTTCCGGTCAGCTCAGTAGAGTAGGTTAGGTCAGTTA
AGCCCCCTAAGTATGAGTATGAGGGAACTGCTGCTAATAAAGAAAGAGAAGGAATGAATGGAAAG
CTCGAGTCAAAAGAAGAGGGAATGTCGGCTACAGTTAGTGTATATCCAACGGAAATGGATAGGTA
ATGAATGGTCCGTTTCTATTCGTTGTAGTAAGCTAGTATAGGCCATAGGTAGTTGCTAGTTCATA
AGCACGCACGGAAAGCAAATGTAGCTAGGTACTTACTATTCCAGGTATGTAACTTCAGCTCAACA
AAGCAAAGCAAGGAAAGCTAACCAATCCAGTAATGTTCTTCAACG
Found at i:620457 original size:23 final size:23
Alignment explanation
Indices: 620431--620477 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
620421 GTATAGTACG
620431 TTTGGTAGCTATCATTCCAGTAA
1 TTTGGTAGCTATCATTCCAGTAA
620454 TTTGGTAGCTATCATTCCAGTAA
1 TTTGGTAGCTATCATTCCAGTAA
620477 T
1 T
620478 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (23 bp):
TTTGGTAGCTATCATTCCAGTAA
Left flanking sequence: Indices 619931 -- 620430
CCATGAATAAGGAATGAATAGTGTAAGGAATGAATAAGCCATGAATAGTGTAAGGAATGAATAAG
CCATGAATAGTGTAAGGAATGAATAAGGAATGAATAATCCATGAATGTTGTAAGGAATGAATGTT
GTTTCCGGTCAAACCAGTTGTTCTCGGTCAATACAGTTACAGTTGTTGTTGTTCTCGCTCAATAC
AGTTACAGTTGTTGTTGTTCTCGCTCAGGTCAGAGGAGACGGGATGTAACCTGTAGCTAAGCCCC
CTAAGTTTGAGGGGACTGCAGCTAATACTAATACGAATAAAGTGCCGGTACTAGTTAGTTAGTTC
CCTTTCCTTGGTATAGTACGTCTGTATAACCTAATCTAGTTCTCTTGTTGATGTATATATAACCT
AACCTAGTGGCACTTGTTGATGTATATATAACCTAGATAATGGATTGTATAGATGAGTGGTAACC
TTCTTCCTTAATCTTTTCAGTATTCAACTAGTATAGTATAGTACG
Right flanking sequence: Indices 620478 -- 620977
GTTCTTCAACAAAGGAATACAGTTAGTTAGTTCTTTGTTCCGGTCAGCTCAGTAGAGTAGGTTAG
GTCAGTTAAGCCCCCTAAGTATGAGTATGAGGGAACTGCTGCTAATAAAGAAAGAGAAGGAATGA
ATGGAAAGCTCGAGTCAAAAGAAGAGGGAATGTCGGCTACAGTTAGTGTATATCCAACGGAAATG
GATAGGTAATGAATGGTCCGTTTCTATTCGTTGTAGTAAGCTAGTATAGGCCATAGGTAGTTGCT
AGTTCATAAGCACGCACGGAAAGCAAATGTAGCTAGGTACTTACTATTCCAGGTATGTAACTTCA
GCTCAACAAAGCAAAGCAAGGAAAGCTAACCAATCCAGTAATGTTCTTCAACGGCAGGAAAGCAA
TACATACAGTCGTTCGTTACGGTCAGCTCAGTAGAGGAGGGAATGTCAGCTGTAGCGAATCTTTC
TTTCTATATATAATATCAATATCTAATTCTTTCTACTGCAGCTAA
Found at i:621173 original size:27 final size:27
Alignment explanation
Indices: 621142--621199 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
621132 CTAGCTAGGC
621142 GTTAATAGAATTATCTAGTACATATGA
1 GTTAATAGAATTATCTAGTACATATGA
621169 GTTAATAGAATTATCTAGTACATATGA
1 GTTAATAGAATTATCTAGTACATATGA
621196 GTTA
1 GTTA
621200 TGAGTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (27 bp):
GTTAATAGAATTATCTAGTACATATGA
Left flanking sequence: Indices 620642 -- 621141
GGCTACAGTTAGTGTATATCCAACGGAAATGGATAGGTAATGAATGGTCCGTTTCTATTCGTTGT
AGTAAGCTAGTATAGGCCATAGGTAGTTGCTAGTTCATAAGCACGCACGGAAAGCAAATGTAGCT
AGGTACTTACTATTCCAGGTATGTAACTTCAGCTCAACAAAGCAAAGCAAGGAAAGCTAACCAAT
CCAGTAATGTTCTTCAACGGCAGGAAAGCAATACATACAGTCGTTCGTTACGGTCAGCTCAGTAG
AGGAGGGAATGTCAGCTGTAGCGAATCTTTCTTTCTATATATAATATCAATATCTAATTCTTTCT
ACTGCAGCTAATCAATCAACTAACATGGGAAAGGTATATACAACGGTAATGATAGTAGTTAGAGG
TTGGAGCTAATGAGTGAGCTCCGTAGTGGCTATCTATATACTTGGGTAATACTGAGTTATTGTTA
TTATTATTATTATTAGGAGAGAGAATCATACTTTTCTAGCTAGGC
Right flanking sequence: Indices 621200 -- 621699
TGAGTTAATAGAATGATCTAGTCCATATGAGGTTCCGCTCTTTGTTATCTAGTAAGTTGATAAGG
TTTCCCTTTCGGTTCTATTAGTACGGTAAGAAATAGCTAGTATAGTCCATATCTAGTTCTAGTTA
GTTACAATACAACGGTAATGGGTAGAAAGGAAAGCAAATGTAGCTAGCTAGTATGTAAAGTAAGG
TAACTTAACTGTCAGCTAGCCTTCTAAGATTGATCATACAATGGGACCTGCAGCTAGCCTTCTAA
GATTGATCATACCTGTAGCTAATCAACTAAGGAAAGAAAAGAGAGGCAGGAAAGAAAAGATAGTA
AGGAAATAAAAGAGAGTCAGGAAATAAAAGAGAGTCAATCCAGTAATGTAATGTTGTTCAAGAAA
GGAAGTAGTAGCGGCTACTGTTGTATGGGTTAATATAATATTGGTTAGTTCCTTTGTTCATCCCT
TGGGAGTCAAGTAAGATAAGAGGTTTGAGTTCTTGCGCTAGGTAG
Found at i:621207 original size:34 final size:34
Alignment explanation
Indices: 621164--621230 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
621154 ATCTAGTACA
*
621164 TATGAGTTAATAGAATTATCTAGTACATATGAGT
1 TATGAGTTAATAGAATGATCTAGTACATATGAGT
*
621198 TATGAGTTAATAGAATGATCTAGTCCATATGAG
1 TATGAGTTAATAGAATGATCTAGTACATATGAG
621231 GTTCCGCTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.36
Consensus pattern (34 bp):
TATGAGTTAATAGAATGATCTAGTACATATGAGT
Left flanking sequence: Indices 620664 -- 621163
ACGGAAATGGATAGGTAATGAATGGTCCGTTTCTATTCGTTGTAGTAAGCTAGTATAGGCCATAG
GTAGTTGCTAGTTCATAAGCACGCACGGAAAGCAAATGTAGCTAGGTACTTACTATTCCAGGTAT
GTAACTTCAGCTCAACAAAGCAAAGCAAGGAAAGCTAACCAATCCAGTAATGTTCTTCAACGGCA
GGAAAGCAATACATACAGTCGTTCGTTACGGTCAGCTCAGTAGAGGAGGGAATGTCAGCTGTAGC
GAATCTTTCTTTCTATATATAATATCAATATCTAATTCTTTCTACTGCAGCTAATCAATCAACTA
ACATGGGAAAGGTATATACAACGGTAATGATAGTAGTTAGAGGTTGGAGCTAATGAGTGAGCTCC
GTAGTGGCTATCTATATACTTGGGTAATACTGAGTTATTGTTATTATTATTATTATTAGGAGAGA
GAATCATACTTTTCTAGCTAGGCGTTAATAGAATTATCTAGTACA
Right flanking sequence: Indices 621231 -- 621730
GTTCCGCTCTTTGTTATCTAGTAAGTTGATAAGGTTTCCCTTTCGGTTCTATTAGTACGGTAAGA
AATAGCTAGTATAGTCCATATCTAGTTCTAGTTAGTTACAATACAACGGTAATGGGTAGAAAGGA
AAGCAAATGTAGCTAGCTAGTATGTAAAGTAAGGTAACTTAACTGTCAGCTAGCCTTCTAAGATT
GATCATACAATGGGACCTGCAGCTAGCCTTCTAAGATTGATCATACCTGTAGCTAATCAACTAAG
GAAAGAAAAGAGAGGCAGGAAAGAAAAGATAGTAAGGAAATAAAAGAGAGTCAGGAAATAAAAGA
GAGTCAATCCAGTAATGTAATGTTGTTCAAGAAAGGAAGTAGTAGCGGCTACTGTTGTATGGGTT
AATATAATATTGGTTAGTTCCTTTGTTCATCCCTTGGGAGTCAAGTAAGATAAGAGGTTTGAGTT
CTTGCGCTAGGTAGTTGGTTTCGTTGTAGTTTCTTTCTAAGTTAA
Found at i:621512 original size:18 final size:18
Alignment explanation
Indices: 621489--621561 Score: 101
Period size: 18 Copynumber: 4.1 Consensus size: 18
621479 TAATCAACTA
*
621489 AGGAAAGAAAAGAGAGGC
1 AGGAAAGAAAAGAGAGTC
* *
621507 AGGAAAGAAAAGATAGTA
1 AGGAAAGAAAAGAGAGTC
*
621525 AGGAAATAAAAGAGAGTC
1 AGGAAAGAAAAGAGAGTC
*
621543 AGGAAATAAAAGAGAGTC
1 AGGAAAGAAAAGAGAGTC
621561 A
1 A
621562 ATCCAGTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.58, C:0.04, G:0.30, T:0.08
Consensus pattern (18 bp):
AGGAAAGAAAAGAGAGTC
Left flanking sequence: Indices 620989 -- 621488
ACATGGGAAAGGTATATACAACGGTAATGATAGTAGTTAGAGGTTGGAGCTAATGAGTGAGCTCC
GTAGTGGCTATCTATATACTTGGGTAATACTGAGTTATTGTTATTATTATTATTATTAGGAGAGA
GAATCATACTTTTCTAGCTAGGCGTTAATAGAATTATCTAGTACATATGAGTTAATAGAATTATC
TAGTACATATGAGTTATGAGTTAATAGAATGATCTAGTCCATATGAGGTTCCGCTCTTTGTTATC
TAGTAAGTTGATAAGGTTTCCCTTTCGGTTCTATTAGTACGGTAAGAAATAGCTAGTATAGTCCA
TATCTAGTTCTAGTTAGTTACAATACAACGGTAATGGGTAGAAAGGAAAGCAAATGTAGCTAGCT
AGTATGTAAAGTAAGGTAACTTAACTGTCAGCTAGCCTTCTAAGATTGATCATACAATGGGACCT
GCAGCTAGCCTTCTAAGATTGATCATACCTGTAGCTAATCAACTA
Right flanking sequence: Indices 621562 -- 622061
ATCCAGTAATGTAATGTTGTTCAAGAAAGGAAGTAGTAGCGGCTACTGTTGTATGGGTTAATATA
ATATTGGTTAGTTCCTTTGTTCATCCCTTGGGAGTCAAGTAAGATAAGAGGTTTGAGTTCTTGCG
CTAGGTAGTTGGTTTCGTTGTAGTTTCTTTCTAAGTTAAGTCGTTTCTTTCGTTGTCGTTTCTTT
CGTTGGGAAAGGGTATTGACAACGCTTAGTCCAGATGAGGTTTAGCTCTTTTAGTCCAGATGAGG
TTTGGTTTAGCTCTTTTAGGTAGTCCATATGAGTTTAGTCCAGATGAGGGTTAGCTCTTTTAGTC
CAGATGAGGTTTGGTTTAGCTCTTTGTTCCCTACCCTATTGAGAGTGTTTCCCGGCACGTTTCTC
TATGTTATGTGATATCTAGTTCTTTCTATTTAATAGCTAGTATAGTCTATATTATATCTAGTTTG
TTTTAGTAAGTGGTAATATCTAGTTATAGTACATATCTAGTATAG
Found at i:621751 original size:15 final size:15
Alignment explanation
Indices: 621731--621761 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
621721 TCTAAGTTAA
621731 GTCGTTTCTTTCGTT
1 GTCGTTTCTTTCGTT
621746 GTCGTTTCTTTCGTT
1 GTCGTTTCTTTCGTT
621761 G
1 G
621762 GGAAAGGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.23, T:0.58
Consensus pattern (15 bp):
GTCGTTTCTTTCGTT
Left flanking sequence: Indices 621231 -- 621730
GTTCCGCTCTTTGTTATCTAGTAAGTTGATAAGGTTTCCCTTTCGGTTCTATTAGTACGGTAAGA
AATAGCTAGTATAGTCCATATCTAGTTCTAGTTAGTTACAATACAACGGTAATGGGTAGAAAGGA
AAGCAAATGTAGCTAGCTAGTATGTAAAGTAAGGTAACTTAACTGTCAGCTAGCCTTCTAAGATT
GATCATACAATGGGACCTGCAGCTAGCCTTCTAAGATTGATCATACCTGTAGCTAATCAACTAAG
GAAAGAAAAGAGAGGCAGGAAAGAAAAGATAGTAAGGAAATAAAAGAGAGTCAGGAAATAAAAGA
GAGTCAATCCAGTAATGTAATGTTGTTCAAGAAAGGAAGTAGTAGCGGCTACTGTTGTATGGGTT
AATATAATATTGGTTAGTTCCTTTGTTCATCCCTTGGGAGTCAAGTAAGATAAGAGGTTTGAGTT
CTTGCGCTAGGTAGTTGGTTTCGTTGTAGTTTCTTTCTAAGTTAA
Right flanking sequence: Indices 621762 -- 622261
GGAAAGGGTATTGACAACGCTTAGTCCAGATGAGGTTTAGCTCTTTTAGTCCAGATGAGGTTTGG
TTTAGCTCTTTTAGGTAGTCCATATGAGTTTAGTCCAGATGAGGGTTAGCTCTTTTAGTCCAGAT
GAGGTTTGGTTTAGCTCTTTGTTCCCTACCCTATTGAGAGTGTTTCCCGGCACGTTTCTCTATGT
TATGTGATATCTAGTTCTTTCTATTTAATAGCTAGTATAGTCTATATTATATCTAGTTTGTTTTA
GTAAGTGGTAATATCTAGTTATAGTACATATCTAGTATAGTCCATATTGGTTAGTTTAGTTCCCT
CTTTCCCGAGTTGGGAGTTAGAGGTATAGTATAGTTACTAGGGATAACCAAGTGTAGCTACGCTC
ACTCGCTCCTTTTGTCATTCGTTATACTATCTATACTGAACTAGATAGTTGTTTTCAGTAAACTA
GTTAGTTAGTCTCGCTAGGCCGTTAGTTAGTTAGTTAGTATTAGA
Found at i:622062 original size:16 final size:17
Alignment explanation
Indices: 622032--622068 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
622022 GTAAGTGGTA
622032 ATATCTAGTTATAGTAC
1 ATATCTAGTTATAGTAC
*
622049 ATATCTAG-TATAGTCC
1 ATATCTAGTTATAGTAC
622065 ATAT
1 ATAT
622069 TGGTTAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (17 bp):
ATATCTAGTTATAGTAC
Left flanking sequence: Indices 621532 -- 622031
AAAAGAGAGTCAGGAAATAAAAGAGAGTCAATCCAGTAATGTAATGTTGTTCAAGAAAGGAAGTA
GTAGCGGCTACTGTTGTATGGGTTAATATAATATTGGTTAGTTCCTTTGTTCATCCCTTGGGAGT
CAAGTAAGATAAGAGGTTTGAGTTCTTGCGCTAGGTAGTTGGTTTCGTTGTAGTTTCTTTCTAAG
TTAAGTCGTTTCTTTCGTTGTCGTTTCTTTCGTTGGGAAAGGGTATTGACAACGCTTAGTCCAGA
TGAGGTTTAGCTCTTTTAGTCCAGATGAGGTTTGGTTTAGCTCTTTTAGGTAGTCCATATGAGTT
TAGTCCAGATGAGGGTTAGCTCTTTTAGTCCAGATGAGGTTTGGTTTAGCTCTTTGTTCCCTACC
CTATTGAGAGTGTTTCCCGGCACGTTTCTCTATGTTATGTGATATCTAGTTCTTTCTATTTAATA
GCTAGTATAGTCTATATTATATCTAGTTTGTTTTAGTAAGTGGTA
Right flanking sequence: Indices 622069 -- 622568
TGGTTAGTTTAGTTCCCTCTTTCCCGAGTTGGGAGTTAGAGGTATAGTATAGTTACTAGGGATAA
CCAAGTGTAGCTACGCTCACTCGCTCCTTTTGTCATTCGTTATACTATCTATACTGAACTAGATA
GTTGTTTTCAGTAAACTAGTTAGTTAGTCTCGCTAGGCCGTTAGTTAGTTAGTTAGTATTAGAGG
AATGTAGTTACCGTTGAATACAGAAAGCTAGTGAATACAGTTGTTCAACAAAGCTAGTGAATACA
GTTGTTGTTGTTGTTTCCGGTGGTAAGCTAGTCAACTAATCCATTCATGTTGTTCCGTTCCCGTT
GAATACAGTTGTTCAACAAAGTAAGTCAATCTAGTTGTTCAACACAGGAAGTTTACGCTAATGAG
TTACCTCCTTTTGGTTAGAAGAGAAGGTAGCGGCTCTATGTGCCGTACAGGGTTCCGCTCTGTTC
TGTTCTTTTCTGTAATAGTGAGTTGCGGGTATAGCTCCGTTCTGT
Found at i:622627 original size:19 final size:19
Alignment explanation
Indices: 622603--622642 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
622593 AGAGTTCATA
622603 TTGGTTTGTTCCTTTGTTG
1 TTGGTTTGTTCCTTTGTTG
622622 TTGGTTTGTTCCTTTGTTG
1 TTGGTTTGTTCCTTTGTTG
622641 TT
1 TT
622643 AGTTAGAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.00, C:0.10, G:0.25, T:0.65
Consensus pattern (19 bp):
TTGGTTTGTTCCTTTGTTG
Left flanking sequence: Indices 622103 -- 622602
GTTAGAGGTATAGTATAGTTACTAGGGATAACCAAGTGTAGCTACGCTCACTCGCTCCTTTTGTC
ATTCGTTATACTATCTATACTGAACTAGATAGTTGTTTTCAGTAAACTAGTTAGTTAGTCTCGCT
AGGCCGTTAGTTAGTTAGTTAGTATTAGAGGAATGTAGTTACCGTTGAATACAGAAAGCTAGTGA
ATACAGTTGTTCAACAAAGCTAGTGAATACAGTTGTTGTTGTTGTTTCCGGTGGTAAGCTAGTCA
ACTAATCCATTCATGTTGTTCCGTTCCCGTTGAATACAGTTGTTCAACAAAGTAAGTCAATCTAG
TTGTTCAACACAGGAAGTTTACGCTAATGAGTTACCTCCTTTTGGTTAGAAGAGAAGGTAGCGGC
TCTATGTGCCGTACAGGGTTCCGCTCTGTTCTGTTCTTTTCTGTAATAGTGAGTTGCGGGTATAG
CTCCGTTCTGTTCTTTTCTGTAATAGCTAAATATAAGAGTTCATA
Right flanking sequence: Indices 622643 -- 623142
AGTTAGAGGGATGCGTTCTCTAGTTTGTTTGTTTCGTTGCACTAGTTACTATACAACGGTAATGA
ATGCTAGATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCTAATTGAGTGAGCACCTTCGATGG
TGGTCACGAGGGTAGCGGCTACTGTTCTCTTCTCTACTTCTACTTGGTTAACTAACTAGTCCGTT
CTGTGTTTCTTCCTGGTTGTTAATGTATTGATCTAGTCCATATGAGGTTTAGCTCTCTTCTCTGT
TCGCTAGTGAGTTAGGAAGGTCAGCTATTCGTTTTTCTAAGGTAAGCACTAGGCTCTTTTTCTAA
GGTAAGCACTAGGTTAGTTTTGCTAAGGTTTTCTCTTCTCCAAGGTTTTCTCTTCTCTTGGGTTT
TCCTCGGTAAGCTAGTAGCTATTAGTTTGTAAAGCTAGTAGTTTCATTCGATTTCTATAGGTAAC
AGTATTTCTATAGTGGTAAGATGGTAGTTGCTCTATACTTGGGTA
Found at i:622988 original size:26 final size:25
Alignment explanation
Indices: 622933--622996 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 25
622923 TCAGCTATTC
622933 GTTTTTCTAAGGTAAGCACTAGGCT
1 GTTTTTCTAAGGTAAGCACTAGGCT
* *
622958 CTTTTTCTAAGGTAAGCACTAGGTT
1 GTTTTTCTAAGGTAAGCACTAGGCT
*
622983 AGTTTTGCTAAGGT
1 -GTTTTTCTAAGGT
622997 TTTCTCTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 23 0.68
26 11 0.32
ACGTcount: A:0.23, C:0.14, G:0.23, T:0.39
Consensus pattern (25 bp):
GTTTTTCTAAGGTAAGCACTAGGCT
Left flanking sequence: Indices 622433 -- 622932
CAACACAGGAAGTTTACGCTAATGAGTTACCTCCTTTTGGTTAGAAGAGAAGGTAGCGGCTCTAT
GTGCCGTACAGGGTTCCGCTCTGTTCTGTTCTTTTCTGTAATAGTGAGTTGCGGGTATAGCTCCG
TTCTGTTCTTTTCTGTAATAGCTAAATATAAGAGTTCATATTGGTTTGTTCCTTTGTTGTTGGTT
TGTTCCTTTGTTGTTAGTTAGAGGGATGCGTTCTCTAGTTTGTTTGTTTCGTTGCACTAGTTACT
ATACAACGGTAATGAATGCTAGATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCTAATTGAGT
GAGCACCTTCGATGGTGGTCACGAGGGTAGCGGCTACTGTTCTCTTCTCTACTTCTACTTGGTTA
ACTAACTAGTCCGTTCTGTGTTTCTTCCTGGTTGTTAATGTATTGATCTAGTCCATATGAGGTTT
AGCTCTCTTCTCTGTTCGCTAGTGAGTTAGGAAGGTCAGCTATTC
Right flanking sequence: Indices 622997 -- 623496
TTTCTCTTCTCCAAGGTTTTCTCTTCTCTTGGGTTTTCCTCGGTAAGCTAGTAGCTATTAGTTTG
TAAAGCTAGTAGTTTCATTCGATTTCTATAGGTAACAGTATTTCTATAGTGGTAAGATGGTAGTT
GCTCTATACTTGGGTAAGTAGTCTGTAGTTTTCATTAACCTAGTATGGATGTATAGTCTGCTAGA
TGGATAGTCCGTTACTAGTTAGTTTCGTTTCTCTTTGCATTAAGCTACTAGTCTAGTTAATAGAT
AGCGTTCCGGTGTAGCTTCCCTTCCCCTCCCTCTTTCCTGTATAAGTCAAGTAAGCTATACCCAA
GATGGTAACTAGTAAGGAAAGGTGGTTGCAGCTACCTTGTGTTTGTTTCGTTTAGTATTCGTAGG
GGATGTCACTTCCTAGTATTATTAGTATAGGATGTCACTTCATAGTATTCGTAGGGGATGTACCC
TGATAGTATTAGTTGCGGATGTAACCTTTCGTTTAGTATTAGTTG
Found at i:623034 original size:17 final size:17
Alignment explanation
Indices: 622992--623024 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
622982 TAGTTTTGCT
622992 AAGGTTTTCTCTTCTCC
1 AAGGTTTTCTCTTCTCC
623009 AAGGTTTTCTCTTCTC
1 AAGGTTTTCTCTTCTC
623025 TTGGGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.27, G:0.12, T:0.48
Consensus pattern (17 bp):
AAGGTTTTCTCTTCTCC
Left flanking sequence: Indices 622492 -- 622991
CTCTATGTGCCGTACAGGGTTCCGCTCTGTTCTGTTCTTTTCTGTAATAGTGAGTTGCGGGTATA
GCTCCGTTCTGTTCTTTTCTGTAATAGCTAAATATAAGAGTTCATATTGGTTTGTTCCTTTGTTG
TTGGTTTGTTCCTTTGTTGTTAGTTAGAGGGATGCGTTCTCTAGTTTGTTTGTTTCGTTGCACTA
GTTACTATACAACGGTAATGAATGCTAGATAGTAGTTACTGACTGAGTTTCTAGGTTGTAGCTAA
TTGAGTGAGCACCTTCGATGGTGGTCACGAGGGTAGCGGCTACTGTTCTCTTCTCTACTTCTACT
TGGTTAACTAACTAGTCCGTTCTGTGTTTCTTCCTGGTTGTTAATGTATTGATCTAGTCCATATG
AGGTTTAGCTCTCTTCTCTGTTCGCTAGTGAGTTAGGAAGGTCAGCTATTCGTTTTTCTAAGGTA
AGCACTAGGCTCTTTTTCTAAGGTAAGCACTAGGTTAGTTTTGCT
Right flanking sequence: Indices 623025 -- 623524
TTGGGTTTTCCTCGGTAAGCTAGTAGCTATTAGTTTGTAAAGCTAGTAGTTTCATTCGATTTCTA
TAGGTAACAGTATTTCTATAGTGGTAAGATGGTAGTTGCTCTATACTTGGGTAAGTAGTCTGTAG
TTTTCATTAACCTAGTATGGATGTATAGTCTGCTAGATGGATAGTCCGTTACTAGTTAGTTTCGT
TTCTCTTTGCATTAAGCTACTAGTCTAGTTAATAGATAGCGTTCCGGTGTAGCTTCCCTTCCCCT
CCCTCTTTCCTGTATAAGTCAAGTAAGCTATACCCAAGATGGTAACTAGTAAGGAAAGGTGGTTG
CAGCTACCTTGTGTTTGTTTCGTTTAGTATTCGTAGGGGATGTCACTTCCTAGTATTATTAGTAT
AGGATGTCACTTCATAGTATTCGTAGGGGATGTACCCTGATAGTATTAGTTGCGGATGTAACCTT
TCGTTTAGTATTAGTTGCGGATGTAACCTTTCGTTTAGTATTAGT
Found at i:623445 original size:26 final size:29
Alignment explanation
Indices: 623374--623447 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 29
623364 TTGTTTCGTT
623374 TAGTATTCGTAGGGGATGTCACTTCCTAG
1 TAGTATTCGTAGGGGATGTCACTTCCTAG
* * **
623403 TATTATTAGTATAGGATGTCACTT-C-A-
1 TAGTATTCGTAGGGGATGTCACTTCCTAG
623429 TAGTATTCGTAGGGGATGT
1 TAGTATTCGTAGGGGATGT
623448 ACCCTGATAG
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
26 15 0.41
27 1 0.03
28 1 0.03
29 20 0.54
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (29 bp):
TAGTATTCGTAGGGGATGTCACTTCCTAG
Left flanking sequence: Indices 622874 -- 623373
TCCATATGAGGTTTAGCTCTCTTCTCTGTTCGCTAGTGAGTTAGGAAGGTCAGCTATTCGTTTTT
CTAAGGTAAGCACTAGGCTCTTTTTCTAAGGTAAGCACTAGGTTAGTTTTGCTAAGGTTTTCTCT
TCTCCAAGGTTTTCTCTTCTCTTGGGTTTTCCTCGGTAAGCTAGTAGCTATTAGTTTGTAAAGCT
AGTAGTTTCATTCGATTTCTATAGGTAACAGTATTTCTATAGTGGTAAGATGGTAGTTGCTCTAT
ACTTGGGTAAGTAGTCTGTAGTTTTCATTAACCTAGTATGGATGTATAGTCTGCTAGATGGATAG
TCCGTTACTAGTTAGTTTCGTTTCTCTTTGCATTAAGCTACTAGTCTAGTTAATAGATAGCGTTC
CGGTGTAGCTTCCCTTCCCCTCCCTCTTTCCTGTATAAGTCAAGTAAGCTATACCCAAGATGGTA
ACTAGTAAGGAAAGGTGGTTGCAGCTACCTTGTGTTTGTTTCGTT
Right flanking sequence: Indices 623448 -- 623947
ACCCTGATAGTATTAGTTGCGGATGTAACCTTTCGTTTAGTATTAGTTGCGGATGTAACCTTTCG
TTTAGTATTAGTTGCGGATGTACCCTTTCGTTGCAATGTCAGCTATTCAACTATGAAACTAAGTT
GTAATCTAATGTCAGCTAGTCTTAGAAGCTCTTCTCAGTCAAGGAAGGAAACATAGGAAAGAGGT
TTTGTTTGTTGGTAAGCTAGCTACTATCCCACTCAGTACGCTAGTTAGAGTAAGTGGTTTGTTTG
TGATAGTTCTAGTTTCTAGGTAGGTACGAAGTCCTTTCTATTTAATAGCTAGTGATAGTTCTAGT
TAATAGGTAGTTCTAGTTAATAGGTAGTTTGGTTTGTTCTAGTTAGAGTCCATAGCAAGTACCTA
AGTACAAGGATAACTGTAGCGTACTGAGTGAGCTCCTTCTGTGTGGTCAGGCTAGTTCCTTAGTC
CGTTTCTACTAGTTCATAAGCACTAGTGTCTATACAACGGTAAGT
Found at i:623491 original size:30 final size:30
Alignment explanation
Indices: 623455--623544 Score: 171
Period size: 30 Copynumber: 3.0 Consensus size: 30
623445 TGTACCCTGA
623455 TAGTATTAGTTGCGGATGTAACCTTTCGTT
1 TAGTATTAGTTGCGGATGTAACCTTTCGTT
623485 TAGTATTAGTTGCGGATGTAACCTTTCGTT
1 TAGTATTAGTTGCGGATGTAACCTTTCGTT
*
623515 TAGTATTAGTTGCGGATGTACCCTTTCGTT
1 TAGTATTAGTTGCGGATGTAACCTTTCGTT
623545 GCAATGTCAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.19, C:0.14, G:0.23, T:0.43
Consensus pattern (30 bp):
TAGTATTAGTTGCGGATGTAACCTTTCGTT
Left flanking sequence: Indices 622955 -- 623454
GCTCTTTTTCTAAGGTAAGCACTAGGTTAGTTTTGCTAAGGTTTTCTCTTCTCCAAGGTTTTCTC
TTCTCTTGGGTTTTCCTCGGTAAGCTAGTAGCTATTAGTTTGTAAAGCTAGTAGTTTCATTCGAT
TTCTATAGGTAACAGTATTTCTATAGTGGTAAGATGGTAGTTGCTCTATACTTGGGTAAGTAGTC
TGTAGTTTTCATTAACCTAGTATGGATGTATAGTCTGCTAGATGGATAGTCCGTTACTAGTTAGT
TTCGTTTCTCTTTGCATTAAGCTACTAGTCTAGTTAATAGATAGCGTTCCGGTGTAGCTTCCCTT
CCCCTCCCTCTTTCCTGTATAAGTCAAGTAAGCTATACCCAAGATGGTAACTAGTAAGGAAAGGT
GGTTGCAGCTACCTTGTGTTTGTTTCGTTTAGTATTCGTAGGGGATGTCACTTCCTAGTATTATT
AGTATAGGATGTCACTTCATAGTATTCGTAGGGGATGTACCCTGA
Right flanking sequence: Indices 623545 -- 624044
GCAATGTCAGCTATTCAACTATGAAACTAAGTTGTAATCTAATGTCAGCTAGTCTTAGAAGCTCT
TCTCAGTCAAGGAAGGAAACATAGGAAAGAGGTTTTGTTTGTTGGTAAGCTAGCTACTATCCCAC
TCAGTACGCTAGTTAGAGTAAGTGGTTTGTTTGTGATAGTTCTAGTTTCTAGGTAGGTACGAAGT
CCTTTCTATTTAATAGCTAGTGATAGTTCTAGTTAATAGGTAGTTCTAGTTAATAGGTAGTTTGG
TTTGTTCTAGTTAGAGTCCATAGCAAGTACCTAAGTACAAGGATAACTGTAGCGTACTGAGTGAG
CTCCTTCTGTGTGGTCAGGCTAGTTCCTTAGTCCGTTTCTACTAGTTCATAAGCACTAGTGTCTA
TACAACGGTAAGTAATGGTTAGTCCATGGGTAGCTTGTAAGTAGTAAGGTATATATATACTTAGT
TAATGGGTTTCTTCTCTTCGTTGTAGTAAGGAAAGGCAATGTAGC
Found at i:623785 original size:17 final size:17
Alignment explanation
Indices: 623763--623801 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
623753 TAGCTAGTGA
623763 TAGTTCTAGTTAATAGG
1 TAGTTCTAGTTAATAGG
623780 TAGTTCTAGTTAATAGG
1 TAGTTCTAGTTAATAGG
623797 TAGTT
1 TAGTT
623802 TGGTTTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (17 bp):
TAGTTCTAGTTAATAGG
Left flanking sequence: Indices 623263 -- 623762
CCGGTGTAGCTTCCCTTCCCCTCCCTCTTTCCTGTATAAGTCAAGTAAGCTATACCCAAGATGGT
AACTAGTAAGGAAAGGTGGTTGCAGCTACCTTGTGTTTGTTTCGTTTAGTATTCGTAGGGGATGT
CACTTCCTAGTATTATTAGTATAGGATGTCACTTCATAGTATTCGTAGGGGATGTACCCTGATAG
TATTAGTTGCGGATGTAACCTTTCGTTTAGTATTAGTTGCGGATGTAACCTTTCGTTTAGTATTA
GTTGCGGATGTACCCTTTCGTTGCAATGTCAGCTATTCAACTATGAAACTAAGTTGTAATCTAAT
GTCAGCTAGTCTTAGAAGCTCTTCTCAGTCAAGGAAGGAAACATAGGAAAGAGGTTTTGTTTGTT
GGTAAGCTAGCTACTATCCCACTCAGTACGCTAGTTAGAGTAAGTGGTTTGTTTGTGATAGTTCT
AGTTTCTAGGTAGGTACGAAGTCCTTTCTATTTAATAGCTAGTGA
Right flanking sequence: Indices 623802 -- 624301
TGGTTTGTTCTAGTTAGAGTCCATAGCAAGTACCTAAGTACAAGGATAACTGTAGCGTACTGAGT
GAGCTCCTTCTGTGTGGTCAGGCTAGTTCCTTAGTCCGTTTCTACTAGTTCATAAGCACTAGTGT
CTATACAACGGTAAGTAATGGTTAGTCCATGGGTAGCTTGTAAGTAGTAAGGTATATATATACTT
AGTTAATGGGTTTCTTCTCTTCGTTGTAGTAAGGAAAGGCAATGTAGCTTTCTAGTAGGTAGGGT
ATTACACTGCAGTTCAGCACAGTAAGCTAAGAAGTTGGTTGTTCAGCACAGTAAGCCAACACAGT
AAAGCAAGGAATACAGTTGTTCTGGTTTAGTAGAGTATTACATGTAACTGCAGCTAAGCCCAAAA
AGTATGAGGGAACTGCAGCTACTCACTCGGTTTAGGGTAGGTAAGGTAATGTAATGTAGCTAACC
AACATGCAGCTAGTCAAGCAAGGAAAGGGAAGGCAGTGCTAACAC
Found at i:624698 original size:8 final size:8
Alignment explanation
Indices: 624681--624715 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
624671 TCTTGAGTTT
624681 GTTAGCTA
1 GTTAGCTA
*
624689 GTTTGCTA
1 GTTAGCTA
624697 GTTAGCTA
1 GTTAGCTA
624705 GTTAGCTA
1 GTTAGCTA
624713 GTT
1 GTT
624716 GTAGGTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.20, C:0.11, G:0.26, T:0.43
Consensus pattern (8 bp):
GTTAGCTA
Left flanking sequence: Indices 624181 -- 624680
TAAGCCCAAAAAGTATGAGGGAACTGCAGCTACTCACTCGGTTTAGGGTAGGTAAGGTAATGTAA
TGTAGCTAACCAACATGCAGCTAGTCAAGCAAGGAAAGGGAAGGCAGTGCTAACACAGTTGTTCA
CCAAGCTAGCCAGTGAGGTAGTCAACGTCGGAAAGAGAGTTAACAGTTGAATCCAGTTGTTCACC
ACAGTAAGCTAGCTAACAGTAAGTTCAGGTATAGGCGCGAAGAAGAGACCGAAGGTATAGGGTTT
TCAGTTGTTGACAGTAGTTCTACCAAAGGAAGTTGTAGCTAACGAGTAACGGAGGGGTGTGCTCA
CGAAGGTAGTGGCTCTATACTTGGGTAATAGTAAGTAACTCTGAGGTACGAAGGCGCGAGACCAA
AGGAAGAGGTACTAGTTAGCTAGTTAGTCGTTAATGTGTATACAACGGTAATAGTTCTTTTCTTT
TCTGAGTTAGTAAGCTAGTTGCTTGGTTGCTTGTTTCTTGAGTTT
Right flanking sequence: Indices 624716 -- 625215
GTAGGTTTGAGTTAGTTTGCTAGTTAGGAAAGGAAGTACTAGTTCTAGGTTTAGTTTGCTAGTTA
GGAAAGGAAGTACTAGGGTTTGTTTTTCGTTGGTAGTCCATATCTAGTATAGTCTATAGAGGTAA
TAGCTCTAGCTAATAGATTGATCTAGTCCATATTGTCTCGTTCCTTTCCTTTGTTCCTTTGTTCC
TTCGTTCCTTCGTCTATCAACAAAGCGACTTGTAGTTCCTGATTAGATACGGGATTTCTCTCTCT
TGTTTCTACTAGTTCATATACTGCCGGTAGTTGGTGTATATCCAACGGTAATGGATAGTCCATTC
CATGGTTAGTTTCTCAGTAGTAAGCTAGTATAGGTCATAAATAGTCCGTAGTCAACTAGTCAATC
AATATCCTGTTGTTCCGATCAGATAGTCTTAGAAGCTCTTCTCAGTGTTGCAAGGAAACAGAGAA
ACTACGGAAAGAGGGTGAACAGTGTCTCGTGGGAAGCATGGGGCC
Found at i:624797 original size:33 final size:36
Alignment explanation
Indices: 624727--624805 Score: 94
Period size: 39 Copynumber: 2.2 Consensus size: 36
624717 TAGGTTTGAG
624727 TTAGTTTGCTAGTTAGGAAAGGAAGTACTAGTTCTA-GGT
1 TTAGTTTGCTAGTTAGGAAAGGAAG-A-TA--TCTAGGGT
624766 TTAGTTTGCTAGTTAGGAAAGGAAG-TA-CTAGGGT
1 TTAGTTTGCTAGTTAGGAAAGGAAGATATCTAGGGT
624800 TT-GTTT
1 TTAGTTT
624806 TTCGTTGGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
33 7 0.18
34 5 0.13
36 2 0.05
39 25 0.64
ACGTcount: A:0.27, C:0.06, G:0.29, T:0.38
Consensus pattern (36 bp):
TTAGTTTGCTAGTTAGGAAAGGAAGATATCTAGGGT
Left flanking sequence: Indices 624227 -- 624726
GGTAGGTAAGGTAATGTAATGTAGCTAACCAACATGCAGCTAGTCAAGCAAGGAAAGGGAAGGCA
GTGCTAACACAGTTGTTCACCAAGCTAGCCAGTGAGGTAGTCAACGTCGGAAAGAGAGTTAACAG
TTGAATCCAGTTGTTCACCACAGTAAGCTAGCTAACAGTAAGTTCAGGTATAGGCGCGAAGAAGA
GACCGAAGGTATAGGGTTTTCAGTTGTTGACAGTAGTTCTACCAAAGGAAGTTGTAGCTAACGAG
TAACGGAGGGGTGTGCTCACGAAGGTAGTGGCTCTATACTTGGGTAATAGTAAGTAACTCTGAGG
TACGAAGGCGCGAGACCAAAGGAAGAGGTACTAGTTAGCTAGTTAGTCGTTAATGTGTATACAAC
GGTAATAGTTCTTTTCTTTTCTGAGTTAGTAAGCTAGTTGCTTGGTTGCTTGTTTCTTGAGTTTG
TTAGCTAGTTTGCTAGTTAGCTAGTTAGCTAGTTGTAGGTTTGAG
Right flanking sequence: Indices 624806 -- 625305
TTCGTTGGTAGTCCATATCTAGTATAGTCTATAGAGGTAATAGCTCTAGCTAATAGATTGATCTA
GTCCATATTGTCTCGTTCCTTTCCTTTGTTCCTTTGTTCCTTCGTTCCTTCGTCTATCAACAAAG
CGACTTGTAGTTCCTGATTAGATACGGGATTTCTCTCTCTTGTTTCTACTAGTTCATATACTGCC
GGTAGTTGGTGTATATCCAACGGTAATGGATAGTCCATTCCATGGTTAGTTTCTCAGTAGTAAGC
TAGTATAGGTCATAAATAGTCCGTAGTCAACTAGTCAATCAATATCCTGTTGTTCCGATCAGATA
GTCTTAGAAGCTCTTCTCAGTGTTGCAAGGAAACAGAGAAACTACGGAAAGAGGGTGAACAGTGT
CTCGTGGGAAGCATGGGGCCACTCTGATAGCTGCTAGTTAGAGGAAGGGTTTGTTCTAGTTAGAG
GTAATAGCAAGTAGCTAATAGGCTAGTTCCTTTGTTTGTCAAGGT
Found at i:624904 original size:8 final size:8
Alignment explanation
Indices: 624891--624920 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
624881 TCTCGTTCCT
624891 TTCCTTTG
1 TTCCTTTG
624899 TTCCTTTG
1 TTCCTTTG
*
624907 TTCCTTCG
1 TTCCTTTG
624915 TTCCTT
1 TTCCTT
624921 CGTCTATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.30, G:0.10, T:0.60
Consensus pattern (8 bp):
TTCCTTTG
Left flanking sequence: Indices 624391 -- 624890
ACAGTAAGTTCAGGTATAGGCGCGAAGAAGAGACCGAAGGTATAGGGTTTTCAGTTGTTGACAGT
AGTTCTACCAAAGGAAGTTGTAGCTAACGAGTAACGGAGGGGTGTGCTCACGAAGGTAGTGGCTC
TATACTTGGGTAATAGTAAGTAACTCTGAGGTACGAAGGCGCGAGACCAAAGGAAGAGGTACTAG
TTAGCTAGTTAGTCGTTAATGTGTATACAACGGTAATAGTTCTTTTCTTTTCTGAGTTAGTAAGC
TAGTTGCTTGGTTGCTTGTTTCTTGAGTTTGTTAGCTAGTTTGCTAGTTAGCTAGTTAGCTAGTT
GTAGGTTTGAGTTAGTTTGCTAGTTAGGAAAGGAAGTACTAGTTCTAGGTTTAGTTTGCTAGTTA
GGAAAGGAAGTACTAGGGTTTGTTTTTCGTTGGTAGTCCATATCTAGTATAGTCTATAGAGGTAA
TAGCTCTAGCTAATAGATTGATCTAGTCCATATTGTCTCGTTCCT
Right flanking sequence: Indices 624921 -- 625420
CGTCTATCAACAAAGCGACTTGTAGTTCCTGATTAGATACGGGATTTCTCTCTCTTGTTTCTACT
AGTTCATATACTGCCGGTAGTTGGTGTATATCCAACGGTAATGGATAGTCCATTCCATGGTTAGT
TTCTCAGTAGTAAGCTAGTATAGGTCATAAATAGTCCGTAGTCAACTAGTCAATCAATATCCTGT
TGTTCCGATCAGATAGTCTTAGAAGCTCTTCTCAGTGTTGCAAGGAAACAGAGAAACTACGGAAA
GAGGGTGAACAGTGTCTCGTGGGAAGCATGGGGCCACTCTGATAGCTGCTAGTTAGAGGAAGGGT
TTGTTCTAGTTAGAGGTAATAGCAAGTAGCTAATAGGCTAGTTCCTTTGTTTGTCAAGGTAGGTA
ACTCAACTAGTCCGGTAACTCAACTAGTCCAATAGATGGGTAATTGTAGATAGATGGGTAATTGT
AGATAGATGGGTAATTCATTACATTATCGGTCGGGTAAGGGGTCT
Found at i:625329 original size:17 final size:17
Alignment explanation
Indices: 625307--625340 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
625297 TGTCAAGGTA
625307 GGTAACTCAACTAGTCC
1 GGTAACTCAACTAGTCC
625324 GGTAACTCAACTAGTCC
1 GGTAACTCAACTAGTCC
625341 AATAGATGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (17 bp):
GGTAACTCAACTAGTCC
Left flanking sequence: Indices 624807 -- 625306
TCGTTGGTAGTCCATATCTAGTATAGTCTATAGAGGTAATAGCTCTAGCTAATAGATTGATCTAG
TCCATATTGTCTCGTTCCTTTCCTTTGTTCCTTTGTTCCTTCGTTCCTTCGTCTATCAACAAAGC
GACTTGTAGTTCCTGATTAGATACGGGATTTCTCTCTCTTGTTTCTACTAGTTCATATACTGCCG
GTAGTTGGTGTATATCCAACGGTAATGGATAGTCCATTCCATGGTTAGTTTCTCAGTAGTAAGCT
AGTATAGGTCATAAATAGTCCGTAGTCAACTAGTCAATCAATATCCTGTTGTTCCGATCAGATAG
TCTTAGAAGCTCTTCTCAGTGTTGCAAGGAAACAGAGAAACTACGGAAAGAGGGTGAACAGTGTC
TCGTGGGAAGCATGGGGCCACTCTGATAGCTGCTAGTTAGAGGAAGGGTTTGTTCTAGTTAGAGG
TAATAGCAAGTAGCTAATAGGCTAGTTCCTTTGTTTGTCAAGGTA
Right flanking sequence: Indices 625341 -- 625840
AATAGATGGGTAATTGTAGATAGATGGGTAATTGTAGATAGATGGGTAATTCATTACATTATCGG
TCGGGTAAGGGGTCTTGGATGAAACCTGTAGCGGCAAGCCTACTAAGTCTGAGGGAACTTAGGCT
AGTCAACTGAGTGATAATGTCAGGTAGGTAGTTCCTTTGTCAGCTAGTTCTAATGTCAGCTAGTT
CTTTTGTTGTCAGCTAGTTCCTTTGTTTGTGCTAGTCAACTAAGCGTTGCGTTGGAAAGAGAGTC
AAGCAAGTCAACTCCGGAAAAAGGGTTTGGTTTGTCTGTTGGTAAGCTAGGTACTATACTATCTC
ACTCAGATAGCTAGTTAGAGGAAGGGGTTGTTCTATCCAGTTATAGTTCATAGTCCGTAAGTATT
CTGCTAGTATAGATAGTCCGTTTCTAGTATAGATGGTAATGAATGATAGCAGTGCCGAGGTTGTA
GCGTGGTGAGTGAGCTCCTTTTGGTTAGAGGGTAGTGGCTAAAGG
Found at i:625365 original size:18 final size:18
Alignment explanation
Indices: 625342--625391 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
625332 AACTAGTCCA
625342 ATAGATGGGTAATTGTAG
1 ATAGATGGGTAATTGTAG
625360 ATAGATGGGTAATTGTAG
1 ATAGATGGGTAATTGTAG
625378 ATAGATGGGTAATT
1 ATAGATGGGTAATT
625392 CATTACATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (18 bp):
ATAGATGGGTAATTGTAG
Left flanking sequence: Indices 624842 -- 625341
GTAATAGCTCTAGCTAATAGATTGATCTAGTCCATATTGTCTCGTTCCTTTCCTTTGTTCCTTTG
TTCCTTCGTTCCTTCGTCTATCAACAAAGCGACTTGTAGTTCCTGATTAGATACGGGATTTCTCT
CTCTTGTTTCTACTAGTTCATATACTGCCGGTAGTTGGTGTATATCCAACGGTAATGGATAGTCC
ATTCCATGGTTAGTTTCTCAGTAGTAAGCTAGTATAGGTCATAAATAGTCCGTAGTCAACTAGTC
AATCAATATCCTGTTGTTCCGATCAGATAGTCTTAGAAGCTCTTCTCAGTGTTGCAAGGAAACAG
AGAAACTACGGAAAGAGGGTGAACAGTGTCTCGTGGGAAGCATGGGGCCACTCTGATAGCTGCTA
GTTAGAGGAAGGGTTTGTTCTAGTTAGAGGTAATAGCAAGTAGCTAATAGGCTAGTTCCTTTGTT
TGTCAAGGTAGGTAACTCAACTAGTCCGGTAACTCAACTAGTCCA
Right flanking sequence: Indices 625392 -- 625891
CATTACATTATCGGTCGGGTAAGGGGTCTTGGATGAAACCTGTAGCGGCAAGCCTACTAAGTCTG
AGGGAACTTAGGCTAGTCAACTGAGTGATAATGTCAGGTAGGTAGTTCCTTTGTCAGCTAGTTCT
AATGTCAGCTAGTTCTTTTGTTGTCAGCTAGTTCCTTTGTTTGTGCTAGTCAACTAAGCGTTGCG
TTGGAAAGAGAGTCAAGCAAGTCAACTCCGGAAAAAGGGTTTGGTTTGTCTGTTGGTAAGCTAGG
TACTATACTATCTCACTCAGATAGCTAGTTAGAGGAAGGGGTTGTTCTATCCAGTTATAGTTCAT
AGTCCGTAAGTATTCTGCTAGTATAGATAGTCCGTTTCTAGTATAGATGGTAATGAATGATAGCA
GTGCCGAGGTTGTAGCGTGGTGAGTGAGCTCCTTTTGGTTAGAGGGTAGTGGCTAAAGGATATAC
TTGGGTAATACTTCGTTATTAGGAGAGAGAAGAATAAATACGAAG
Found at i:625520 original size:16 final size:17
Alignment explanation
Indices: 625499--625561 Score: 60
Period size: 16 Copynumber: 3.8 Consensus size: 17
625489 GTCAGGTAGG
625499 TAGTTCCT-TTGTCAGC
1 TAGTTCCTATTGTCAGC
*
625515 TAGTT-CTAATGTCAGC
1 TAGTTCCTATTGTCAGC
* *
625531 TAGTTCTTTTGTTGTCAGC
1 TAGTTC--CTATTGTCAGC
625550 TAGTTCCT-TTGT
1 TAGTTCCTATTGT
625562 TTGTGCTAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
15 2 0.05
16 21 0.55
17 1 0.03
19 14 0.37
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.48
Consensus pattern (17 bp):
TAGTTCCTATTGTCAGC
Left flanking sequence: Indices 624999 -- 625498
CCGGTAGTTGGTGTATATCCAACGGTAATGGATAGTCCATTCCATGGTTAGTTTCTCAGTAGTAA
GCTAGTATAGGTCATAAATAGTCCGTAGTCAACTAGTCAATCAATATCCTGTTGTTCCGATCAGA
TAGTCTTAGAAGCTCTTCTCAGTGTTGCAAGGAAACAGAGAAACTACGGAAAGAGGGTGAACAGT
GTCTCGTGGGAAGCATGGGGCCACTCTGATAGCTGCTAGTTAGAGGAAGGGTTTGTTCTAGTTAG
AGGTAATAGCAAGTAGCTAATAGGCTAGTTCCTTTGTTTGTCAAGGTAGGTAACTCAACTAGTCC
GGTAACTCAACTAGTCCAATAGATGGGTAATTGTAGATAGATGGGTAATTGTAGATAGATGGGTA
ATTCATTACATTATCGGTCGGGTAAGGGGTCTTGGATGAAACCTGTAGCGGCAAGCCTACTAAGT
CTGAGGGAACTTAGGCTAGTCAACTGAGTGATAATGTCAGGTAGG
Right flanking sequence: Indices 625562 -- 626061
TTGTGCTAGTCAACTAAGCGTTGCGTTGGAAAGAGAGTCAAGCAAGTCAACTCCGGAAAAAGGGT
TTGGTTTGTCTGTTGGTAAGCTAGGTACTATACTATCTCACTCAGATAGCTAGTTAGAGGAAGGG
GTTGTTCTATCCAGTTATAGTTCATAGTCCGTAAGTATTCTGCTAGTATAGATAGTCCGTTTCTA
GTATAGATGGTAATGAATGATAGCAGTGCCGAGGTTGTAGCGTGGTGAGTGAGCTCCTTTTGGTT
AGAGGGTAGTGGCTAAAGGATATACTTGGGTAATACTTCGTTATTAGGAGAGAGAAGAATAAATA
CGAAGTACGCTAGGCAATGAGATAGTCCATATGAGTTAATAGAATGAGCATAGTCCATATGAGTT
AATAGAATGATCTAGTCTCCATATGAGGTTTAGCTCTTTGTTCCCTAGTAAGTTTCCTTTCCCTT
AGTTTGTCTTAGTCCGGTAAGAAATATCGGCGTATAGGTAATAGG
Found at i:625564 original size:23 final size:19
Alignment explanation
Indices: 625524--625562 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
625514 CTAGTTCTAA
625524 TGTCAGCTAGTTCTTTTGT
1 TGTCAGCTAGTTCTTTTGT
*
625543 TGTCAGCTAGTTCCTTTGT
1 TGTCAGCTAGTTCTTTTGT
625562 T
1 T
625563 TGTGCTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.10, C:0.18, G:0.21, T:0.51
Consensus pattern (19 bp):
TGTCAGCTAGTTCTTTTGT
Left flanking sequence: Indices 625024 -- 625523
TAATGGATAGTCCATTCCATGGTTAGTTTCTCAGTAGTAAGCTAGTATAGGTCATAAATAGTCCG
TAGTCAACTAGTCAATCAATATCCTGTTGTTCCGATCAGATAGTCTTAGAAGCTCTTCTCAGTGT
TGCAAGGAAACAGAGAAACTACGGAAAGAGGGTGAACAGTGTCTCGTGGGAAGCATGGGGCCACT
CTGATAGCTGCTAGTTAGAGGAAGGGTTTGTTCTAGTTAGAGGTAATAGCAAGTAGCTAATAGGC
TAGTTCCTTTGTTTGTCAAGGTAGGTAACTCAACTAGTCCGGTAACTCAACTAGTCCAATAGATG
GGTAATTGTAGATAGATGGGTAATTGTAGATAGATGGGTAATTCATTACATTATCGGTCGGGTAA
GGGGTCTTGGATGAAACCTGTAGCGGCAAGCCTACTAAGTCTGAGGGAACTTAGGCTAGTCAACT
GAGTGATAATGTCAGGTAGGTAGTTCCTTTGTCAGCTAGTTCTAA
Right flanking sequence: Indices 625563 -- 626062
TGTGCTAGTCAACTAAGCGTTGCGTTGGAAAGAGAGTCAAGCAAGTCAACTCCGGAAAAAGGGTT
TGGTTTGTCTGTTGGTAAGCTAGGTACTATACTATCTCACTCAGATAGCTAGTTAGAGGAAGGGG
TTGTTCTATCCAGTTATAGTTCATAGTCCGTAAGTATTCTGCTAGTATAGATAGTCCGTTTCTAG
TATAGATGGTAATGAATGATAGCAGTGCCGAGGTTGTAGCGTGGTGAGTGAGCTCCTTTTGGTTA
GAGGGTAGTGGCTAAAGGATATACTTGGGTAATACTTCGTTATTAGGAGAGAGAAGAATAAATAC
GAAGTACGCTAGGCAATGAGATAGTCCATATGAGTTAATAGAATGAGCATAGTCCATATGAGTTA
ATAGAATGATCTAGTCTCCATATGAGGTTTAGCTCTTTGTTCCCTAGTAAGTTTCCTTTCCCTTA
GTTTGTCTTAGTCCGGTAAGAAATATCGGCGTATAGGTAATAGGA
Found at i:625941 original size:28 final size:28
Alignment explanation
Indices: 625902--625978 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
625892 TACGCTAGGC
625902 AATGAG-ATAGTCCATATGAGTTAATAG
1 AATGAGCATAGTCCATATGAGTTAATAG
625929 AATGAGCATAGTCCATATGAGTTAATAG
1 AATGAGCATAGTCCATATGAGTTAATAG
*
625957 AATGATC-TAGTCTCCATATGAG
1 AATGAGCATAG--TCCATATGAG
625979 GTTTAGCTCT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
27 9 0.20
28 27 0.59
29 10 0.22
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (28 bp):
AATGAGCATAGTCCATATGAGTTAATAG
Left flanking sequence: Indices 625402 -- 625901
TCGGTCGGGTAAGGGGTCTTGGATGAAACCTGTAGCGGCAAGCCTACTAAGTCTGAGGGAACTTA
GGCTAGTCAACTGAGTGATAATGTCAGGTAGGTAGTTCCTTTGTCAGCTAGTTCTAATGTCAGCT
AGTTCTTTTGTTGTCAGCTAGTTCCTTTGTTTGTGCTAGTCAACTAAGCGTTGCGTTGGAAAGAG
AGTCAAGCAAGTCAACTCCGGAAAAAGGGTTTGGTTTGTCTGTTGGTAAGCTAGGTACTATACTA
TCTCACTCAGATAGCTAGTTAGAGGAAGGGGTTGTTCTATCCAGTTATAGTTCATAGTCCGTAAG
TATTCTGCTAGTATAGATAGTCCGTTTCTAGTATAGATGGTAATGAATGATAGCAGTGCCGAGGT
TGTAGCGTGGTGAGTGAGCTCCTTTTGGTTAGAGGGTAGTGGCTAAAGGATATACTTGGGTAATA
CTTCGTTATTAGGAGAGAGAAGAATAAATACGAAGTACGCTAGGC
Right flanking sequence: Indices 625979 -- 626478
GTTTAGCTCTTTGTTCCCTAGTAAGTTTCCTTTCCCTTAGTTTGTCTTAGTCCGGTAAGAAATAT
CGGCGTATAGGTAATAGGAAGTCAACTAGTATAGTACGTCCGATAGATGGGTAATGAATTACATT
CTCGGTCAGGTAGTATTCCTTACATGTAGTTTCCGGTCAATCCAGTAATGTTGTGAAACTAAGGA
CTTCGTACCTGTTGTTTCCGGTAATGGGATGTATGTCAGCTGTAGCTAATGTTTCTATATATATA
ATAGATAATGATAATGTCAGTTAGTCAACTAAGGAACCAGTCCAACACAAGGCGATAGGTTAGTA
CTGGATATATGGTAGTAGATGGGAAAGAGGTATACTTCCCAGGGAACTGGTAGGTGTAGCTACGC
TCACTCGCTCCTGGCACTTCTGTGTAGTCACTCAGGGAGTGGCTAAAGGATATATCTTTCAATAG
AATTGTCTAGGTAATATGAGTATGTTCTGTTCTCTTGTTCCTGAG
Found at i:632381 original size:54 final size:53
Alignment explanation
Indices: 632322--632477 Score: 185
Period size: 54 Copynumber: 2.9 Consensus size: 53
632312 TTACCTTACA
632322 GTCTTAACCTTCGTGCCTCTCACTTCTAAGG-AGT-CCTTC-TGACCTCTCACTTTG
1 GTCTTAACCTTCGTGCCTCTCACTT-T--GGTAGTACCTTCGTG-CCTCTCACTTTG
**
632376 GTCTTAACCTTC-TGACCTCTCACTTTGGTCTTAACCTTCGTGCCTCTCACTTTG
1 GTCTTAACCTTCGTG-CCTCTCACTTTGGTAGT-ACCTTCGTGCCTCTCACTTTG
**
632430 GTCTTAACCTTCGTGCCTCTCACTTTGGTCTTAACCTTCGTGCCTCTC
1 GTCTTAACCTTCGTGCCTCTCACTTTGGTAGT-ACCTTCGTGCCTCTC
632478 CATTTTTTCC
Statistics
Matches: 94, Mismatches: 2, Indels: 12
0.87 0.02 0.11
Matches are distributed among these distances:
51 2 0.02
52 1 0.01
53 3 0.03
54 84 0.89
55 4 0.04
ACGTcount: A:0.13, C:0.34, G:0.14, T:0.39
Consensus pattern (53 bp):
GTCTTAACCTTCGTGCCTCTCACTTTGGTAGTACCTTCGTGCCTCTCACTTTG
Left flanking sequence: Indices 631822 -- 632321
TGCTATTTCTTGGCCATTGGATCAGCAAGGGTGTGATTCAGATGGATCAAGAGAAGATCAGGTCT
GTTGTGGACTGGGAAGTGCCGAAGAAGGAGAGAGCAGTAACAGCAGATAGTGGAACAGAACTAGC
AGCAGATAGGCATTCAGTTAGTTAGCTTGAAAACAGACTCGTAGTTAGAAATCAGATGCTTCCTC
TCTTCTCCTTCGGACCCTCGATTCTCCAGTTTACAGAGCGTGTTTGTTAGCCCGAAAAGACCCAA
TAAATTCGAGGTGGATCCCCGGCACATCGGTTTTGATTCCTCTTCCTATTCCTCGTCGTCCTTGT
CGTCGTCTTCATCTTTGTCTTCTTCGGAGCTATATTCGGATGTAGATTTGGAATTGAGTGGTGGT
TAACATCCTAAATGGGGTCGCTTAGTTGTTTTCGTGTGAGGGGAATCTGGCACTTTGACACGGCT
CCTTCTGGTAGATAGAAAGCTAGCTCGGGAACCTCTTACCTTACA
Right flanking sequence: Indices 632478 -- 632977
CATTTTTTCCTATTCCATTTTGACGCTATGAAATCCTGAAATTGGAGACAAAAACTCGCATCTAG
CATAGGGCGAAAGTAAGCCTCGGAGTTTTGAGATTATTATCTTATATTATGTAAAAAGGAAAACT
ATATAAATTAGTTGCATTTTCTCGTTATTTTTCGTAGCAAATGGGACATTTTTAGGAGTAGGATC
AAAAAGGTAACATATTTCTTTGAACATGCGGGAATTCCGAAACCAAAGGGTTCACTAGTGGGTTC
ACTAGGCAGGCAATACAATACCGGTCGAGCACCTTCTTACTTCTCACAAGTAAAATACTAAAGTA
AAGGATATCTCAGATATCTCACAAGTAACGAGTATATAAATTCCCTCTCCTGATTGTCTCGTTAG
AAACCCCCCTCGTTCCTCGTACCTAAAGGCCCTCTACTGGACTTTTCTTTCGACCTATTATTCCT
AATGGTCAACACTGTAGACCTCTACTTGAGGAAATAGCTGCTAAA
Found at i:632386 original size:27 final size:27
Alignment explanation
Indices: 632356--632477 Score: 212
Period size: 27 Copynumber: 4.5 Consensus size: 27
632346 TCTAAGGAGT
632356 CCTTC-TGACCTCTCACTTTGGTCTTAA
1 CCTTCGTG-CCTCTCACTTTGGTCTTAA
632383 CCTTC-TGACCTCTCACTTTGGTCTTAA
1 CCTTCGTG-CCTCTCACTTTGGTCTTAA
632410 CCTTCGTGCCTCTCACTTTGGTCTTAA
1 CCTTCGTGCCTCTCACTTTGGTCTTAA
632437 CCTTCGTGCCTCTCACTTTGGTCTTAA
1 CCTTCGTGCCTCTCACTTTGGTCTTAA
632464 CCTTCGTGCCTCTC
1 CCTTCGTGCCTCTC
632478 CATTTTTTCC
Statistics
Matches: 94, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
27 92 0.98
28 2 0.02
ACGTcount: A:0.11, C:0.35, G:0.13, T:0.40
Consensus pattern (27 bp):
CCTTCGTGCCTCTCACTTTGGTCTTAA
Left flanking sequence: Indices 631856 -- 632355
GATTCAGATGGATCAAGAGAAGATCAGGTCTGTTGTGGACTGGGAAGTGCCGAAGAAGGAGAGAG
CAGTAACAGCAGATAGTGGAACAGAACTAGCAGCAGATAGGCATTCAGTTAGTTAGCTTGAAAAC
AGACTCGTAGTTAGAAATCAGATGCTTCCTCTCTTCTCCTTCGGACCCTCGATTCTCCAGTTTAC
AGAGCGTGTTTGTTAGCCCGAAAAGACCCAATAAATTCGAGGTGGATCCCCGGCACATCGGTTTT
GATTCCTCTTCCTATTCCTCGTCGTCCTTGTCGTCGTCTTCATCTTTGTCTTCTTCGGAGCTATA
TTCGGATGTAGATTTGGAATTGAGTGGTGGTTAACATCCTAAATGGGGTCGCTTAGTTGTTTTCG
TGTGAGGGGAATCTGGCACTTTGACACGGCTCCTTCTGGTAGATAGAAAGCTAGCTCGGGAACCT
CTTACCTTACAGTCTTAACCTTCGTGCCTCTCACTTCTAAGGAGT
Right flanking sequence: Indices 632478 -- 632977
CATTTTTTCCTATTCCATTTTGACGCTATGAAATCCTGAAATTGGAGACAAAAACTCGCATCTAG
CATAGGGCGAAAGTAAGCCTCGGAGTTTTGAGATTATTATCTTATATTATGTAAAAAGGAAAACT
ATATAAATTAGTTGCATTTTCTCGTTATTTTTCGTAGCAAATGGGACATTTTTAGGAGTAGGATC
AAAAAGGTAACATATTTCTTTGAACATGCGGGAATTCCGAAACCAAAGGGTTCACTAGTGGGTTC
ACTAGGCAGGCAATACAATACCGGTCGAGCACCTTCTTACTTCTCACAAGTAAAATACTAAAGTA
AAGGATATCTCAGATATCTCACAAGTAACGAGTATATAAATTCCCTCTCCTGATTGTCTCGTTAG
AAACCCCCCTCGTTCCTCGTACCTAAAGGCCCTCTACTGGACTTTTCTTTCGACCTATTATTCCT
AATGGTCAACACTGTAGACCTCTACTTGAGGAAATAGCTGCTAAA
Found at i:632412 original size:81 final size:80
Alignment explanation
Indices: 632322--632477 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 80
632312 TTACCTTACA
632322 GTCTTAACCTTCGTGCCTCTCACTTCTAAGG-AGT-CCTTC-TGACCTCTCACTTTGGTCTTAAC
1 GTCTTAACCTTCGTGCCTCTCACTT-T--GGTAGTACCTTCGTG-CCTCTCACTTTGGTCTTAAC
632384 CTTC-TGACCTCTCACTTTG
62 CTTCGTG-CCTCTCACTTTG
**
632403 GTCTTAACCTTCGTGCCTCTCACTTTGGTCTTAACCTTCGTGCCTCTCACTTTGGTCTTAACCTT
1 GTCTTAACCTTCGTGCCTCTCACTTTGGTAGT-ACCTTCGTGCCTCTCACTTTGGTCTTAACCTT
632468 CGTGCCTCTC
65 CGTGCCTCTC
632478 CATTTTTTCC
Statistics
Matches: 68, Mismatches: 2, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
78 2 0.03
79 1 0.01
80 1 0.01
81 60 0.88
82 4 0.06
ACGTcount: A:0.13, C:0.34, G:0.14, T:0.39
Consensus pattern (80 bp):
GTCTTAACCTTCGTGCCTCTCACTTTGGTAGTACCTTCGTGCCTCTCACTTTGGTCTTAACCTTC
GTGCCTCTCACTTTG
Left flanking sequence: Indices 631822 -- 632321
TGCTATTTCTTGGCCATTGGATCAGCAAGGGTGTGATTCAGATGGATCAAGAGAAGATCAGGTCT
GTTGTGGACTGGGAAGTGCCGAAGAAGGAGAGAGCAGTAACAGCAGATAGTGGAACAGAACTAGC
AGCAGATAGGCATTCAGTTAGTTAGCTTGAAAACAGACTCGTAGTTAGAAATCAGATGCTTCCTC
TCTTCTCCTTCGGACCCTCGATTCTCCAGTTTACAGAGCGTGTTTGTTAGCCCGAAAAGACCCAA
TAAATTCGAGGTGGATCCCCGGCACATCGGTTTTGATTCCTCTTCCTATTCCTCGTCGTCCTTGT
CGTCGTCTTCATCTTTGTCTTCTTCGGAGCTATATTCGGATGTAGATTTGGAATTGAGTGGTGGT
TAACATCCTAAATGGGGTCGCTTAGTTGTTTTCGTGTGAGGGGAATCTGGCACTTTGACACGGCT
CCTTCTGGTAGATAGAAAGCTAGCTCGGGAACCTCTTACCTTACA
Right flanking sequence: Indices 632478 -- 632977
CATTTTTTCCTATTCCATTTTGACGCTATGAAATCCTGAAATTGGAGACAAAAACTCGCATCTAG
CATAGGGCGAAAGTAAGCCTCGGAGTTTTGAGATTATTATCTTATATTATGTAAAAAGGAAAACT
ATATAAATTAGTTGCATTTTCTCGTTATTTTTCGTAGCAAATGGGACATTTTTAGGAGTAGGATC
AAAAAGGTAACATATTTCTTTGAACATGCGGGAATTCCGAAACCAAAGGGTTCACTAGTGGGTTC
ACTAGGCAGGCAATACAATACCGGTCGAGCACCTTCTTACTTCTCACAAGTAAAATACTAAAGTA
AAGGATATCTCAGATATCTCACAAGTAACGAGTATATAAATTCCCTCTCCTGATTGTCTCGTTAG
AAACCCCCCTCGTTCCTCGTACCTAAAGGCCCTCTACTGGACTTTTCTTTCGACCTATTATTCCT
AATGGTCAACACTGTAGACCTCTACTTGAGGAAATAGCTGCTAAA
Found at i:633274 original size:20 final size:20
Alignment explanation
Indices: 633249--633286 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
633239 AGTGCTCAAT
633249 ATACTCAGGATAGTTATGAG
1 ATACTCAGGATAGTTATGAG
* *
633269 ATACTCCGGCTAGTTATG
1 ATACTCAGGATAGTTATG
633287 TTATGAGGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (20 bp):
ATACTCAGGATAGTTATGAG
Left flanking sequence: Indices 632749 -- 633248
AATACAATACCGGTCGAGCACCTTCTTACTTCTCACAAGTAAAATACTAAAGTAAAGGATATCTC
AGATATCTCACAAGTAACGAGTATATAAATTCCCTCTCCTGATTGTCTCGTTAGAAACCCCCCTC
GTTCCTCGTACCTAAAGGCCCTCTACTGGACTTTTCTTTCGACCTATTATTCCTAATGGTCAACA
CTGTAGACCTCTACTTGAGGAAATAGCTGCTAAAACCAAAGCAAATAGAACGGAAAGGTAACTGG
TTACCGACTCTCTTTCCTGGCTCTTATCTGTAAAGGGTCTTATCCGACCTCTGAGTTCATATGAC
AGGTTATGCATCTGAGTAACTAACCCTCTCCTTAATCGATATGGAGCATTTTCACGGCAGTGGAG
AGCACCTCATGTATGTTTCCCTTGAGAGGTTTATTGTGCCGTGTCTTAAACCCCAGTTTTCATGT
CCAAATACTGACTTCTTGTAGCTATCCCTCAGGATAGTGCTCAAT
Right flanking sequence: Indices 633287 -- 633786
TTATGAGGTTTATGAGCTCTACTCCGAATAGTTAGAAAGTTTCTGAGCTCTACTCCGGATAGTTA
TCCAGAATGGGAGGTAACCGTAACCTCAATAGAGTTATACAGCATCCGAGCTCTGTATAGTTAGA
CATCAAATGGGCTCCGATAGAGGTAGAAAGTTGTCGATATCTCTTGATTCGAGATCTATCGCGCT
TCAAAAGGTTTTCCCCCGTACCCCCAAACCCTATAGCCGCGGAGCTCGTGACCACACGTGCTCAC
TCATTAGCTACAGTTATCCTCAATCTTTAGCTACTTCCTATGGACTATAACTGAGTGGGATAGTA
GCTAGCTGGACTTACAACGCAAAACAAATAGCTTACCTCTCTACTAACTCAGTATTACCAAAGTA
TATACACTAACTAGAACTTGCTATTACCTATACGCCGCTATTAACTCCCTATCCCTAAGACAAAC
GGCAGGCAAACCTTACTAACTCAGTAGAGAACAAAGAGCTATACC
Found at i:633312 original size:36 final size:32
Alignment explanation
Indices: 633286--633352 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 32
633276 GGCTAGTTAT
* *
633286 GTTATG-AGGTTTATGAGCTCTACTCCGAATA
1 GTTATGAAAGTTTATGAGCTCTACTCCGGATA
*
633317 GTTA-GAAAGTTTCTGAGCTCTACTCCGGATA
1 GTTATGAAAGTTTATGAGCTCTACTCCGGATA
633348 GTTAT
1 GTTAT
633353 CCAGAATGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (32 bp):
GTTATGAAAGTTTATGAGCTCTACTCCGGATA
Left flanking sequence: Indices 632786 -- 633285
AGTAAAATACTAAAGTAAAGGATATCTCAGATATCTCACAAGTAACGAGTATATAAATTCCCTCT
CCTGATTGTCTCGTTAGAAACCCCCCTCGTTCCTCGTACCTAAAGGCCCTCTACTGGACTTTTCT
TTCGACCTATTATTCCTAATGGTCAACACTGTAGACCTCTACTTGAGGAAATAGCTGCTAAAACC
AAAGCAAATAGAACGGAAAGGTAACTGGTTACCGACTCTCTTTCCTGGCTCTTATCTGTAAAGGG
TCTTATCCGACCTCTGAGTTCATATGACAGGTTATGCATCTGAGTAACTAACCCTCTCCTTAATC
GATATGGAGCATTTTCACGGCAGTGGAGAGCACCTCATGTATGTTTCCCTTGAGAGGTTTATTGT
GCCGTGTCTTAAACCCCAGTTTTCATGTCCAAATACTGACTTCTTGTAGCTATCCCTCAGGATAG
TGCTCAATATACTCAGGATAGTTATGAGATACTCCGGCTAGTTAT
Right flanking sequence: Indices 633353 -- 633852
CCAGAATGGGAGGTAACCGTAACCTCAATAGAGTTATACAGCATCCGAGCTCTGTATAGTTAGAC
ATCAAATGGGCTCCGATAGAGGTAGAAAGTTGTCGATATCTCTTGATTCGAGATCTATCGCGCTT
CAAAAGGTTTTCCCCCGTACCCCCAAACCCTATAGCCGCGGAGCTCGTGACCACACGTGCTCACT
CATTAGCTACAGTTATCCTCAATCTTTAGCTACTTCCTATGGACTATAACTGAGTGGGATAGTAG
CTAGCTGGACTTACAACGCAAAACAAATAGCTTACCTCTCTACTAACTCAGTATTACCAAAGTAT
ATACACTAACTAGAACTTGCTATTACCTATACGCCGCTATTAACTCCCTATCCCTAAGACAAACG
GCAGGCAAACCTTACTAACTCAGTAGAGAACAAAGAGCTATACCTCATCTCATATTACCGTTGTG
AATTCATACCCTTTCCCAACGAAACTAACTACCGCAAGAACTCAT
Found at i:634248 original size:27 final size:27
Alignment explanation
Indices: 634206--634263 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
634196 GGAACTAAAC
634206 TAACTCATATGCACTAAATCATTCTAT
1 TAACTCATATGCACTAAATCATTCTAT
* *
634233 TAACTCATATGGACTAGATCATTCTAT
1 TAACTCATATGCACTAAATCATTCTAT
634260 TAAC
1 TAAC
634264 ACCTAGCGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (27 bp):
TAACTCATATGCACTAAATCATTCTAT
Left flanking sequence: Indices 633706 -- 634205
ATACGCCGCTATTAACTCCCTATCCCTAAGACAAACGGCAGGCAAACCTTACTAACTCAGTAGAG
AACAAAGAGCTATACCTCATCTCATATTACCGTTGTGAATTCATACCCTTTCCCAACGAAACTAA
CTACCGCAAGAACTCATCCCGTATCTAATCAGGAACAAAGGAACTAAACAAACCAATATGGACGT
AATCCATCTATTAGCTACAGGTATGGATATACCCTATACTAACTAGTAGAGAGCTATTATCTATA
CTATACTAGATATTTCCGTACTAAGAGAAACATGCCGGGAAACCAAGAGCTACCCTGAAAAACTC
CTAAGACAAACCAAAGGGAACTAACTCATATTATCTAGATCAATACATTCGCTTCGCACCTTATC
CCTAGTAGCCGTTACACTCGGTGACAAAAGGAGGGCACTCGCGTAACTACACTTGCTTATCCCTA
GTAACTATACCTCGAACTACCAACTCGGGAACAAAGGAACTAAAC
Right flanking sequence: Indices 634264 -- 634763
ACCTAGCGTCAAAAGTCTGATCTCTACGGCACTCAGTATTACAAAAGTATATACCGAAACCATCA
TACTACCTACCTAGAACCTCTAACCCATCTACTACAACATATCTAGTACGTTGCTCTTGCCTTGT
GTTGGAGCTTCCTTTGTTTCACAATTCACCGGCTTACTTGGTTGACTAGCTGACAAAAGAATTCG
ATATTATATATAGATAGAAAGATTAGCTACAGCGGACATGTAATACTCTATTCTCTGACCGAAAC
AACTAACTGTATTCCTTGGTTTGTTGAGCTGAATGAAGTGTAATACCTGTAATACGCCGCTTACC
TTACTTAGGAAAGAAAAAGGAATAGCTTACCTTACTAACGTTAGCCTTACTTCCCCTATACTACT
ACAACAGTTTAGCTACTATCTATGAATCATTCATTACCTAAGTATTTTAACTAACTGACTATCAC
TAGCTATTACCTCTCACTATCTATCACCGGACTAAGAGAAACATT
Found at i:635346 original size:30 final size:30
Alignment explanation
Indices: 635310--635369 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
635300 AAGTTGCCTA
635310 GCTGGATGTTAGCTACAGGTATGAGAAATC
1 GCTGGATGTTAGCTACAGGTATGAGAAATC
635340 GCTGGATGTTAGCTACAGGTATGAGAAATC
1 GCTGGATGTTAGCTACAGGTATGAGAAATC
635370 TTATAAGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (30 bp):
GCTGGATGTTAGCTACAGGTATGAGAAATC
Left flanking sequence: Indices 634810 -- 635309
ACGGAACAAAGAGGTATAGCTCATATGGAGGGAGATGCAGCTCATGATAATTCTATTAACGAAGA
TTACCTAGATCATGATAATGATAATTCTATTAACTCATATGGACTAGACAATTCTATTTCAAGAT
ATATTATATCCTTTAGCTACTCCCTGAGTGATAAAAGAAAGTAGCTCACTCACTACGCTACACCT
ATGCTTTCCCTGGGAAGTCTACCTTGAACCCTGAAACTACTGACTTTCTTTCCTTGCTTTGTTTC
ACAACTGTGTTATGTTAGTGTTAGCTTCCTTTGTTTCACAACATTCCTGTCTGTAATCCTATCAA
CGCTAGCTACATTTATTTGCTTTCTTTACTACTTTCTACAAACTTTACTACTAAGTACAACGAAA
CAACCCATTCATTATCGTTGTATATACACTAACTATCACTTGCTATGGACTATACTGGCTTATCA
AGGCAAAGCAAAACCTAGGGAGTACTTTCTTTCCTAAGTTGCCTA
Right flanking sequence: Indices 635370 -- 635869
TTATAAGGCTAGCTGCATTGTCCCAGTGTATGAGAAATAAGGCTAGTTGATAGACGAAGGAACAA
AGGAAAGGAACAAACAAATATGGACGTAATCCATCTATTAGCTACAGGTACTACGTCCTATACCC
GAAACTCAACTATTAGTATTAGAGAGCTATTACCGTAACTATCTATCACCGGACTAAGAGAAACG
AAAGGAAAACCAAGAGCTACCCTGAAAAACGACTCAAAAAACCCTTAGAAAGAAACCTCATATTA
CCGTTATCAATCAATTATATGGACTAGAGATTGAGAAATCAATTCGATTGTTATATCCTTATCCC
TATACACTCTACCTCGAACTACGAACTCGGGAACAAAGTAGCTTCGTTGATTAAGATAGACTTTG
GAAAGAGGGAACAAAGTAGCAAACTTCGTTGATTAAGATAGACTTTGGAAAGAGGGAACAAAACG
AACCCTGTAATTACCTATCCATTACCTAAGGATAGTCAAAAACTG
Found at i:636669 original size:35 final size:38
Alignment explanation
Indices: 636586--636680 Score: 124
Period size: 35 Copynumber: 2.5 Consensus size: 38
636576 AGCAAGGAAA
636586 GGAAATAGCTGCTTTAACCGTCCGGAAATAGAATGGATAAG
1 GGAAATAGCTGCTTTAACCGTCCGG--ATA-AATGGATAAG
* *
636627 GGAAATAGCTGCTTTAACCGTCC-G-T-CATGGCTAAG
1 GGAAATAGCTGCTTTAACCGTCCGGATAAATGGATAAG
636662 GGAAATAGCTGCTTTAACC
1 GGAAATAGCTGCTTTAACC
636681 TAAGTAAATG
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
35 27 0.52
37 1 0.02
40 1 0.02
41 23 0.44
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (38 bp):
GGAAATAGCTGCTTTAACCGTCCGGATAAATGGATAAG
Left flanking sequence: Indices 636086 -- 636585
GAGTCCCTTGGACCTCATCCAGAGAAATAACTACCTCTGGACTCTGGACTACTAAGAGTAATAAA
TCTAATTCCTACAATGAATTACGTCTTCCCTGGAAACTTACAAGTGGAGCAATAGATAAATAAAC
CGATCCTTGAAGTCGAGCCAAAAGGACCTCTCCTTGAAGTGAAGTTGAGCCCCCTTTCTACCTCT
CCCGGAAAGTCGAGTATATAAATAAACCTCTCCTTTCTTCATTCAGTCGAGTAGTACCTATGCCG
CCCTATACTGGAAAATCAAGCACGATAGACTTCTTCCCTAAAGGTCGAGTCAAGAGGACAAATAC
TGATTGGATTGTCTCCAGCTCCAGATTGTCATTGTCTAAACTTCTCCCAAGTCAAATACTTTCAG
TCAAGCAAAATACTTGAAGTCTCGCACTTTGGTATCTCCGAAACGAAACATGTTGTTAACTTGCT
AAGTTGCTAACTTTCGACCTTTCTACCTGGAGTAGAGCAAGGAAA
Right flanking sequence: Indices 636681 -- 637180
TAAGTAAATGTCATGGATAAGGGAACTGGTTACCAACTATCTTTCCTAAAGGAAAGCCTCTTATC
TGACCTCCTAGTTGATATGAAAGGTTCCGTATATCCTGATGAGACTATCTCCTTAACGGCTAGAG
GGCATTTTAACAAGAGTTCTGGCATCCTCGTTACTGTTTGCCTATCGAGGTATCTTTCAAGTGTT
TTGTCTTAAACCGCAGTTTTCCTGTCTTATCTTAAACCCCATCTAGGACAAATACTGATTGGAGC
TATCCTGAGGGATAGTGCTCAATATACTTCGGACTTCGGACTTCAGATAGTTATGAGGTTTATGA
GCTATACTCCGTTATCCATCATTGGAGGGAACCTCAATAGAGACAGCAGTAGAGGAAATAGAAAT
CTCTGTGTAGTTATCAAATGGGCTCCGATAGAGTGAGTTATAGTTATAACAAAGGAAAGCAAATA
AAAGAAACAGCTCTTCCCTATCCTATGTTCTTAACTTGGTACCTC
Found at i:637352 original size:21 final size:21
Alignment explanation
Indices: 637328--637369 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
637318 AACCCGTTCT
637328 TTTGCGTTACTTTTTATCCAA
1 TTTGCGTTACTTTTTATCCAA
637349 TTTGCGTTACTTTTTATCCAA
1 TTTGCGTTACTTTTTATCCAA
637370 AAGGAGGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (21 bp):
TTTGCGTTACTTTTTATCCAA
Left flanking sequence: Indices 636828 -- 637327
TCTGGCATCCTCGTTACTGTTTGCCTATCGAGGTATCTTTCAAGTGTTTTGTCTTAAACCGCAGT
TTTCCTGTCTTATCTTAAACCCCATCTAGGACAAATACTGATTGGAGCTATCCTGAGGGATAGTG
CTCAATATACTTCGGACTTCGGACTTCAGATAGTTATGAGGTTTATGAGCTATACTCCGTTATCC
ATCATTGGAGGGAACCTCAATAGAGACAGCAGTAGAGGAAATAGAAATCTCTGTGTAGTTATCAA
ATGGGCTCCGATAGAGTGAGTTATAGTTATAACAAAGGAAAGCAAATAAAAGAAACAGCTCTTCC
CTATCCTATGTTCTTAACTTGGTACCTCAACGGCACAGTCAACAATAAATAAATTACCTCTTAGT
TTCCTTAGGAAAAGTATGTAATAACCCGACTTTATAGAGAGTTTGAAGATTATTTGCTACTATTT
ATGTCATTTAGAAAACGTAAGAAATGAGTTATGAAAACCCGTTCT
Right flanking sequence: Indices 637370 -- 637869
AAGGAGGAACAGGATCAAAAAGGTAACTAATTTCTTTTCTGAGATGAGACTCTTCAATATCAATA
GAAACCTGTGGATTCACTACACTGGGCAATACAATAACTCTCACTTCTAAGGAGTAATAAATACC
TCTTCTTTCGGTCGAGTAATAAATACCTCTCGCTATGCTCGAGCCCCTTTGGGCCTCTCACTTCT
AAGGAGTAATAAATATCGTTTCAACGGAACTCACTTCCCTGACCAACCTCTCCCTTCGGTCAACA
CCAAAGGGCTGAATCCTTCTAAGAGTGCTTCGCCCCTCATCCAGAGATATGAATAACCTCTTCTT
TTCACTCAACAATCAATTCCCTCTCTTGATTTATTAGCTACAGTATTCTCAATCGCCGGGTCGGC
TCACAACAGAACAAAGGAACAACAGAACAAACAAGAGATTAGATTCTAAGAAGAGTGCTGAAACC
CGCTTCGCTAACCTCGCAGCCTTGTCCTTGTGTTGGACTGGCTTC
Found at i:637541 original size:27 final size:27
Alignment explanation
Indices: 637486--637542 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
637476 CACTTCTAAG
* * *
637486 GAGTAATAAATACCTCTTCTTTCGGTC
1 GAGTAATAAATACCTCTGCTATCGCTC
637513 GAGTAATAAATACCTCTCGCTAT-GCTC
1 GAGTAATAAATACCTCT-GCTATCGCTC
637540 GAG
1 GAG
637543 CCCCTTTGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (27 bp):
GAGTAATAAATACCTCTGCTATCGCTC
Left flanking sequence: Indices 636986 -- 637485
GATAGTTATGAGGTTTATGAGCTATACTCCGTTATCCATCATTGGAGGGAACCTCAATAGAGACA
GCAGTAGAGGAAATAGAAATCTCTGTGTAGTTATCAAATGGGCTCCGATAGAGTGAGTTATAGTT
ATAACAAAGGAAAGCAAATAAAAGAAACAGCTCTTCCCTATCCTATGTTCTTAACTTGGTACCTC
AACGGCACAGTCAACAATAAATAAATTACCTCTTAGTTTCCTTAGGAAAAGTATGTAATAACCCG
ACTTTATAGAGAGTTTGAAGATTATTTGCTACTATTTATGTCATTTAGAAAACGTAAGAAATGAG
TTATGAAAACCCGTTCTTTTGCGTTACTTTTTATCCAATTTGCGTTACTTTTTATCCAAAAGGAG
GAACAGGATCAAAAAGGTAACTAATTTCTTTTCTGAGATGAGACTCTTCAATATCAATAGAAACC
TGTGGATTCACTACACTGGGCAATACAATAACTCTCACTTCTAAG
Right flanking sequence: Indices 637543 -- 638042
CCCCTTTGGGCCTCTCACTTCTAAGGAGTAATAAATATCGTTTCAACGGAACTCACTTCCCTGAC
CAACCTCTCCCTTCGGTCAACACCAAAGGGCTGAATCCTTCTAAGAGTGCTTCGCCCCTCATCCA
GAGATATGAATAACCTCTTCTTTTCACTCAACAATCAATTCCCTCTCTTGATTTATTAGCTACAG
TATTCTCAATCGCCGGGTCGGCTCACAACAGAACAAAGGAACAACAGAACAAACAAGAGATTAGA
TTCTAAGAAGAGTGCTGAAACCCGCTTCGCTAACCTCGCAGCCTTGTCCTTGTGTTGGACTGGCT
TCCTTTGTTGAACAATTGTATTGACTTACTTTGTTGAACAACTGTATTGACTGACCGAGAACAAC
ATTCATTCCTTAGTTGACTTGCTCACCGGAAACGTAATTACAGGAATACTAGCTAGCGGACTATC
GGACGGACTATCCTAACAACTATCTATGGACTATACTAACTAGTT
Found at i:637899 original size:26 final size:26
Alignment explanation
Indices: 637870--637919 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
637860 GACTGGCTTC
*
637870 CTTTGTTGAACAATTGTATTGACTTA
1 CTTTGTTGAACAACTGTATTGACTTA
637896 CTTTGTTGAACAACTGTATTGACT
1 CTTTGTTGAACAACTGTATTGACT
637920 GACCGAGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (26 bp):
CTTTGTTGAACAACTGTATTGACTTA
Left flanking sequence: Indices 637370 -- 637869
AAGGAGGAACAGGATCAAAAAGGTAACTAATTTCTTTTCTGAGATGAGACTCTTCAATATCAATA
GAAACCTGTGGATTCACTACACTGGGCAATACAATAACTCTCACTTCTAAGGAGTAATAAATACC
TCTTCTTTCGGTCGAGTAATAAATACCTCTCGCTATGCTCGAGCCCCTTTGGGCCTCTCACTTCT
AAGGAGTAATAAATATCGTTTCAACGGAACTCACTTCCCTGACCAACCTCTCCCTTCGGTCAACA
CCAAAGGGCTGAATCCTTCTAAGAGTGCTTCGCCCCTCATCCAGAGATATGAATAACCTCTTCTT
TTCACTCAACAATCAATTCCCTCTCTTGATTTATTAGCTACAGTATTCTCAATCGCCGGGTCGGC
TCACAACAGAACAAAGGAACAACAGAACAAACAAGAGATTAGATTCTAAGAAGAGTGCTGAAACC
CGCTTCGCTAACCTCGCAGCCTTGTCCTTGTGTTGGACTGGCTTC
Right flanking sequence: Indices 637920 -- 638419
GACCGAGAACAACATTCATTCCTTAGTTGACTTGCTCACCGGAAACGTAATTACAGGAATACTAG
CTAGCGGACTATCGGACGGACTATCCTAACAACTATCTATGGACTATACTAACTAGTTTACTGAT
AAAGGAAGGTTCCCACTCAGCTATCCAATCGAGAAACCGGACAATGAAGAAACAAGAACAACATT
ACCTCAATCGCCGGGTTAGGGTGGCTCACACAGGAACAAGATATTTTATGAGATAGAGTGCTGAT
ATTAGCCTAAGTATGAGAAATCTTAGAAGGCTCACACAGGAACAATGAAATATGTACTCAACTTG
TCTGGTGGAATACAAAGTCGTAGATGTACTCTTATGCATTACACCTTACTCGTAGTAAAGGAAAG
GGAATGAACGGCGTATCCATTAGAACTTAGTACAGAGGGATTCTATTACGATTATTCATTCAAAG
ATTACCCAATCCAGTAGCCACTCTAACTTCATTCAGTCGTCCAGT
Found at i:638512 original size:8 final size:8
Alignment explanation
Indices: 638499--638525 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
638489 TTACAGTCGA
638499 GTTACTAC
1 GTTACTAC
638507 GTTACTAC
1 GTTACTAC
638515 GTTACTAC
1 GTTACTAC
638523 GTT
1 GTT
638526 CCTAGAGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (8 bp):
GTTACTAC
Left flanking sequence: Indices 637999 -- 638498
GACGGACTATCCTAACAACTATCTATGGACTATACTAACTAGTTTACTGATAAAGGAAGGTTCCC
ACTCAGCTATCCAATCGAGAAACCGGACAATGAAGAAACAAGAACAACATTACCTCAATCGCCGG
GTTAGGGTGGCTCACACAGGAACAAGATATTTTATGAGATAGAGTGCTGATATTAGCCTAAGTAT
GAGAAATCTTAGAAGGCTCACACAGGAACAATGAAATATGTACTCAACTTGTCTGGTGGAATACA
AAGTCGTAGATGTACTCTTATGCATTACACCTTACTCGTAGTAAAGGAAAGGGAATGAACGGCGT
ATCCATTAGAACTTAGTACAGAGGGATTCTATTACGATTATTCATTCAAAGATTACCCAATCCAG
TAGCCACTCTAACTTCATTCAGTCGTCCAGTTCGCTTGTGCCAAGCAGCACTCCGCACGTCGTTA
ACTTCGGCTCTATATTCCCTCCCTCATTCCTCTCCTTACAGTCGA
Right flanking sequence: Indices 638526 -- 639025
CCTAGAGCTACACCAATACAATCCAATACACCTAGGTTTGTTAGTTAGCTGACTCGCTGATCGGA
ACAACAGGATATATTGATTGACTAGTTGACATACCGAGTTAGATGACATACACCTAACTGACATA
CCGAGTTAGATGACATACCTAGTGGAGTTACCTACCATACTGATTGATCTATCTACCTAGCTGAC
ATACCGAGTTACCTATCGAGTTAGTTACCGTAGGAGTTACTAGCTACTGCTTTCCTGTATACTGA
GAAACGGACCACTACCGTCCGGATAGTAACTAACTAACTAGAACTAGCTATTACATGGACTAAGA
GCCGCTATCACCTCCCTAATAGAAACGGCAGTTGCCGGGAAACCTGTATAACTCACTAGATCAAA
GAAAGAGCTAAACCTCATCTCATATGGACTAAGTTCATTCATACCCGAAACCCAACGAAACTAAC
TACCTAGAGATAGAGACAGAAATCCCGTATCTAATCAGGAACAAA
Found at i:638639 original size:17 final size:17
Alignment explanation
Indices: 638617--638674 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
638607 ATTGACTAGT
638617 TGACATACCGAGTTAGA
1 TGACATACCGAGTTAGA
**
638634 TGACATA-C-ACCTA-A
1 TGACATACCGAGTTAGA
638648 CTGACATACCGAGTTAGA
1 -TGACATACCGAGTTAGA
638666 TGACATACC
1 TGACATACC
638675 TAGTGGAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 1 0.03
15 10 0.30
16 2 0.06
17 19 0.58
18 1 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.22
Consensus pattern (17 bp):
TGACATACCGAGTTAGA
Left flanking sequence: Indices 638117 -- 638616
CTCAATCGCCGGGTTAGGGTGGCTCACACAGGAACAAGATATTTTATGAGATAGAGTGCTGATAT
TAGCCTAAGTATGAGAAATCTTAGAAGGCTCACACAGGAACAATGAAATATGTACTCAACTTGTC
TGGTGGAATACAAAGTCGTAGATGTACTCTTATGCATTACACCTTACTCGTAGTAAAGGAAAGGG
AATGAACGGCGTATCCATTAGAACTTAGTACAGAGGGATTCTATTACGATTATTCATTCAAAGAT
TACCCAATCCAGTAGCCACTCTAACTTCATTCAGTCGTCCAGTTCGCTTGTGCCAAGCAGCACTC
CGCACGTCGTTAACTTCGGCTCTATATTCCCTCCCTCATTCCTCTCCTTACAGTCGAGTTACTAC
GTTACTACGTTACTACGTTCCTAGAGCTACACCAATACAATCCAATACACCTAGGTTTGTTAGTT
AGCTGACTCGCTGATCGGAACAACAGGATATATTGATTGACTAGT
Right flanking sequence: Indices 638675 -- 639174
TAGTGGAGTTACCTACCATACTGATTGATCTATCTACCTAGCTGACATACCGAGTTACCTATCGA
GTTAGTTACCGTAGGAGTTACTAGCTACTGCTTTCCTGTATACTGAGAAACGGACCACTACCGTC
CGGATAGTAACTAACTAACTAGAACTAGCTATTACATGGACTAAGAGCCGCTATCACCTCCCTAA
TAGAAACGGCAGTTGCCGGGAAACCTGTATAACTCACTAGATCAAAGAAAGAGCTAAACCTCATC
TCATATGGACTAAGTTCATTCATACCCGAAACCCAACGAAACTAACTACCTAGAGATAGAGACAG
AAATCCCGTATCTAATCAGGAACAAACTGAATATGAATATGGAGATGCAGCTCATGATAATTCTA
TTAACTCCCTATGGACTATCTCATTCTATTAACTCATATTACCTATAACTCTCACAACTGCTCTT
TCTGGAGTTTCTCTGTTTCGTTGCTTGACTGAGAAGAGCTTCTAA
Found at i:639370 original size:18 final size:18
Alignment explanation
Indices: 639356--639475 Score: 179
Period size: 18 Copynumber: 6.7 Consensus size: 18
639346 CATTAGCTAT
**
639356 AACTACTGTATTAGCTAT
1 AACTACTGTATTAGCTCG
*
639374 AACTACTGTATTGGCTCG
1 AACTACTGTATTAGCTCG
639392 AACTACTGTATTAGCTCG
1 AACTACTGTATTAGCTCG
639410 AACTACTGTATTAGCTCG
1 AACTACTGTATTAGCTCG
* *
639428 AACTACTGTATTTTG-TAG
1 AACTACTGTA-TTAGCTCG
639446 AACTACTGTATTAGCTCG
1 AACTACTGTATTAGCTCG
639464 AACTACTGTATT
1 AACTACTGTATT
639476 TTGTAGAACT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
17 3 0.03
18 86 0.93
19 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (18 bp):
AACTACTGTATTAGCTCG
Left flanking sequence: Indices 638856 -- 639355
TATCACCTCCCTAATAGAAACGGCAGTTGCCGGGAAACCTGTATAACTCACTAGATCAAAGAAAG
AGCTAAACCTCATCTCATATGGACTAAGTTCATTCATACCCGAAACCCAACGAAACTAACTACCT
AGAGATAGAGACAGAAATCCCGTATCTAATCAGGAACAAACTGAATATGAATATGGAGATGCAGC
TCATGATAATTCTATTAACTCCCTATGGACTATCTCATTCTATTAACTCATATTACCTATAACTC
TCACAACTGCTCTTTCTGGAGTTTCTCTGTTTCGTTGCTTGACTGAGAAGAGCTTCTAAGACTAG
CTGACATTAGATTAGAACTTAGTTGACTAGTTTACTAGTTTCATAGCTGACATTGGAACTTGAGG
TTACATCCGCAACTCACTATTACTAGAGTGGAGAGCGCAACCCTGTACTAACATAGAGCCGCTAC
CGCTACTTGAGTGACAAAAGGAAAGGAGATAACCTCATTAGCTAT
Right flanking sequence: Indices 639476 -- 639975
TTGTAGAACTCCTGTATTTGGTAGAACAACTATGAAGAACTGTTATCTCTTCTCTCAAACCTTCA
AAAACCAACTATTCGAATACTAGCTTCCTGTTAGCTACAGGTATTGTATTCTTAATCTTAGAAGC
CTAGCTTTAAGTTACCTTACCGGACGAGTTACTAGGTACTGCAAACCTTACTCCAAGGAAACGGA
CCATTACCATAGTATATCCACTAACTGACTATGACTAGCTATTACCTCTTCTTTCTAAGGAGCCC
TTCGTACCTAAAACTATCACAAACCCCCTTCCTCGGCACTAGCAGCTATCCTCATGTATGTTTCC
CTATCGAGGTTTGGTTTCTTTCAAGTGTCTTAAACCCCAGTTTTCATGGACAAATAGAACCTTCT
TCTAGCTATCCCTCAGGAAAGTGCTCCGGATATTGCTCAATATACTCTGGCTAGTCTAGTTATGA
AGTTTCTGATATGAGCTATACTGCGTGGAGTTATTCAGTTTCTGA
Found at i:639396 original size:36 final size:36
Alignment explanation
Indices: 639347--639493 Score: 190
Period size: 36 Copynumber: 4.1 Consensus size: 36
639337 AGATAACCTC
** *
639347 ATTAGCTATAACTACTGTATTAGCTATAACTACTGT
1 ATTAGCTCGAACTACTGTATTAGCTAGAACTACTGT
* *
639383 ATTGGCTCGAACTACTGTATTAGCTCGAACTACTGT
1 ATTAGCTCGAACTACTGTATTAGCTAGAACTACTGT
*
639419 ATTAGCTCGAACTACTGTATTTTG-TAGAACTACTGT
1 ATTAGCTCGAACTACTGTA-TTAGCTAGAACTACTGT
* *
639455 ATTAGCTCGAACTACTGTATTTTG-TAGAACTCCTGT
1 ATTAGCTCGAACTACTGTA-TTAGCTAGAACTACTGT
639491 ATT
1 ATT
639494 TGGTAGAACA
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
36 98 0.97
37 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (36 bp):
ATTAGCTCGAACTACTGTATTAGCTAGAACTACTGT
Left flanking sequence: Indices 638847 -- 639346
AAGAGCCGCTATCACCTCCCTAATAGAAACGGCAGTTGCCGGGAAACCTGTATAACTCACTAGAT
CAAAGAAAGAGCTAAACCTCATCTCATATGGACTAAGTTCATTCATACCCGAAACCCAACGAAAC
TAACTACCTAGAGATAGAGACAGAAATCCCGTATCTAATCAGGAACAAACTGAATATGAATATGG
AGATGCAGCTCATGATAATTCTATTAACTCCCTATGGACTATCTCATTCTATTAACTCATATTAC
CTATAACTCTCACAACTGCTCTTTCTGGAGTTTCTCTGTTTCGTTGCTTGACTGAGAAGAGCTTC
TAAGACTAGCTGACATTAGATTAGAACTTAGTTGACTAGTTTACTAGTTTCATAGCTGACATTGG
AACTTGAGGTTACATCCGCAACTCACTATTACTAGAGTGGAGAGCGCAACCCTGTACTAACATAG
AGCCGCTACCGCTACTTGAGTGACAAAAGGAAAGGAGATAACCTC
Right flanking sequence: Indices 639494 -- 639993
TGGTAGAACAACTATGAAGAACTGTTATCTCTTCTCTCAAACCTTCAAAAACCAACTATTCGAAT
ACTAGCTTCCTGTTAGCTACAGGTATTGTATTCTTAATCTTAGAAGCCTAGCTTTAAGTTACCTT
ACCGGACGAGTTACTAGGTACTGCAAACCTTACTCCAAGGAAACGGACCATTACCATAGTATATC
CACTAACTGACTATGACTAGCTATTACCTCTTCTTTCTAAGGAGCCCTTCGTACCTAAAACTATC
ACAAACCCCCTTCCTCGGCACTAGCAGCTATCCTCATGTATGTTTCCCTATCGAGGTTTGGTTTC
TTTCAAGTGTCTTAAACCCCAGTTTTCATGGACAAATAGAACCTTCTTCTAGCTATCCCTCAGGA
AAGTGCTCCGGATATTGCTCAATATACTCTGGCTAGTCTAGTTATGAAGTTTCTGATATGAGCTA
TACTGCGTGGAGTTATTCAGTTTCTGAGCTCTACTCCGTTATCCA
Found at i:639432 original size:54 final size:54
Alignment explanation
Indices: 639347--639502 Score: 208
Period size: 54 Copynumber: 2.9 Consensus size: 54
639337 AGATAACCTC
** * *
639347 ATTAGCTATAACTACTGTATTAGCTATAACTACTGTA-TTGGCTCGAACTACTGT
1 ATTAGCTCGAACTACTGTATTAGCTAGAACTACTGTATTTGG-TAGAACTACTGT
* *
639401 ATTAGCTCGAACTACTGTATTAGCTCGAACTACTGTATTTTGTAGAACTACTGT
1 ATTAGCTCGAACTACTGTATTAGCTAGAACTACTGTATTTGGTAGAACTACTGT
* *
639455 ATTAGCTCGAACTACTGTATTTTG-TAGAACTCCTGTATTTGGTAGAAC
1 ATTAGCTCGAACTACTGTA-TTAGCTAGAACTACTGTATTTGGTAGAAC
639503 AACTATGAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
54 84 0.93
55 6 0.07
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (54 bp):
ATTAGCTCGAACTACTGTATTAGCTAGAACTACTGTATTTGGTAGAACTACTGT
Left flanking sequence: Indices 638847 -- 639346
AAGAGCCGCTATCACCTCCCTAATAGAAACGGCAGTTGCCGGGAAACCTGTATAACTCACTAGAT
CAAAGAAAGAGCTAAACCTCATCTCATATGGACTAAGTTCATTCATACCCGAAACCCAACGAAAC
TAACTACCTAGAGATAGAGACAGAAATCCCGTATCTAATCAGGAACAAACTGAATATGAATATGG
AGATGCAGCTCATGATAATTCTATTAACTCCCTATGGACTATCTCATTCTATTAACTCATATTAC
CTATAACTCTCACAACTGCTCTTTCTGGAGTTTCTCTGTTTCGTTGCTTGACTGAGAAGAGCTTC
TAAGACTAGCTGACATTAGATTAGAACTTAGTTGACTAGTTTACTAGTTTCATAGCTGACATTGG
AACTTGAGGTTACATCCGCAACTCACTATTACTAGAGTGGAGAGCGCAACCCTGTACTAACATAG
AGCCGCTACCGCTACTTGAGTGACAAAAGGAAAGGAGATAACCTC
Right flanking sequence: Indices 639503 -- 640002
AACTATGAAGAACTGTTATCTCTTCTCTCAAACCTTCAAAAACCAACTATTCGAATACTAGCTTC
CTGTTAGCTACAGGTATTGTATTCTTAATCTTAGAAGCCTAGCTTTAAGTTACCTTACCGGACGA
GTTACTAGGTACTGCAAACCTTACTCCAAGGAAACGGACCATTACCATAGTATATCCACTAACTG
ACTATGACTAGCTATTACCTCTTCTTTCTAAGGAGCCCTTCGTACCTAAAACTATCACAAACCCC
CTTCCTCGGCACTAGCAGCTATCCTCATGTATGTTTCCCTATCGAGGTTTGGTTTCTTTCAAGTG
TCTTAAACCCCAGTTTTCATGGACAAATAGAACCTTCTTCTAGCTATCCCTCAGGAAAGTGCTCC
GGATATTGCTCAATATACTCTGGCTAGTCTAGTTATGAAGTTTCTGATATGAGCTATACTGCGTG
GAGTTATTCAGTTTCTGAGCTCTACTCCGTTATCCAGAATCCGAG
Found at i:639484 original size:18 final size:18
Alignment explanation
Indices: 639347--639493 Score: 172
Period size: 18 Copynumber: 8.2 Consensus size: 18
639337 AGATAACCTC
*
639347 ATTAGCTATAACTACTGT
1 ATTAGCTAGAACTACTGT
*
639365 ATTAGCTATAACTACTGT
1 ATTAGCTAGAACTACTGT
* *
639383 ATTGGCTCGAACTACTGT
1 ATTAGCTAGAACTACTGT
*
639401 ATTAGCTCGAACTACTGT
1 ATTAGCTAGAACTACTGT
*
639419 ATTAGCTCGAACTACTGT
1 ATTAGCTAGAACTACTGT
*
639437 ATTTTG-TAGAACTACTGT
1 A-TTAGCTAGAACTACTGT
*
639455 ATTAGCTCGAACTACTGT
1 ATTAGCTAGAACTACTGT
* *
639473 ATTTTG-TAGAACTCCTGT
1 A-TTAGCTAGAACTACTGT
639491 ATT
1 ATT
639494 TGGTAGAACA
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
17 5 0.04
18 104 0.90
19 6 0.05
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (18 bp):
ATTAGCTAGAACTACTGT
Left flanking sequence: Indices 638847 -- 639346
AAGAGCCGCTATCACCTCCCTAATAGAAACGGCAGTTGCCGGGAAACCTGTATAACTCACTAGAT
CAAAGAAAGAGCTAAACCTCATCTCATATGGACTAAGTTCATTCATACCCGAAACCCAACGAAAC
TAACTACCTAGAGATAGAGACAGAAATCCCGTATCTAATCAGGAACAAACTGAATATGAATATGG
AGATGCAGCTCATGATAATTCTATTAACTCCCTATGGACTATCTCATTCTATTAACTCATATTAC
CTATAACTCTCACAACTGCTCTTTCTGGAGTTTCTCTGTTTCGTTGCTTGACTGAGAAGAGCTTC
TAAGACTAGCTGACATTAGATTAGAACTTAGTTGACTAGTTTACTAGTTTCATAGCTGACATTGG
AACTTGAGGTTACATCCGCAACTCACTATTACTAGAGTGGAGAGCGCAACCCTGTACTAACATAG
AGCCGCTACCGCTACTTGAGTGACAAAAGGAAAGGAGATAACCTC
Right flanking sequence: Indices 639494 -- 639993
TGGTAGAACAACTATGAAGAACTGTTATCTCTTCTCTCAAACCTTCAAAAACCAACTATTCGAAT
ACTAGCTTCCTGTTAGCTACAGGTATTGTATTCTTAATCTTAGAAGCCTAGCTTTAAGTTACCTT
ACCGGACGAGTTACTAGGTACTGCAAACCTTACTCCAAGGAAACGGACCATTACCATAGTATATC
CACTAACTGACTATGACTAGCTATTACCTCTTCTTTCTAAGGAGCCCTTCGTACCTAAAACTATC
ACAAACCCCCTTCCTCGGCACTAGCAGCTATCCTCATGTATGTTTCCCTATCGAGGTTTGGTTTC
TTTCAAGTGTCTTAAACCCCAGTTTTCATGGACAAATAGAACCTTCTTCTAGCTATCCCTCAGGA
AAGTGCTCCGGATATTGCTCAATATACTCTGGCTAGTCTAGTTATGAAGTTTCTGATATGAGCTA
TACTGCGTGGAGTTATTCAGTTTCTGAGCTCTACTCCGTTATCCA
Found at i:640029 original size:34 final size:32
Alignment explanation
Indices: 639986--640089 Score: 104
Period size: 34 Copynumber: 3.2 Consensus size: 32
639976 GCTCTACTCC
*
639986 GTTATCCAGAATCCGAGGGAACCTCCAGATAGTA
1 GTTATCCAGAATCCGAGGAAACCTCCA-ATAG-A
* * *
640020 GTTATCCAGAATCGGACGTAACCTCATCAATAGA
1 GTTATCCAGAATCCGAGGAAACCTC--CAATAGA
*
640054 GTTATACC-GGATCCGAGGAAACCT-CAATAGA
1 GTTAT-CCAGAATCCGAGGAAACCTCCAATAGA
640085 GTTAT
1 GTTAT
640090 ACATCAACTG
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
31 12 0.20
34 40 0.67
35 6 0.10
36 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (32 bp):
GTTATCCAGAATCCGAGGAAACCTCCAATAGA
Left flanking sequence: Indices 639486 -- 639985
CCTGTATTTGGTAGAACAACTATGAAGAACTGTTATCTCTTCTCTCAAACCTTCAAAAACCAACT
ATTCGAATACTAGCTTCCTGTTAGCTACAGGTATTGTATTCTTAATCTTAGAAGCCTAGCTTTAA
GTTACCTTACCGGACGAGTTACTAGGTACTGCAAACCTTACTCCAAGGAAACGGACCATTACCAT
AGTATATCCACTAACTGACTATGACTAGCTATTACCTCTTCTTTCTAAGGAGCCCTTCGTACCTA
AAACTATCACAAACCCCCTTCCTCGGCACTAGCAGCTATCCTCATGTATGTTTCCCTATCGAGGT
TTGGTTTCTTTCAAGTGTCTTAAACCCCAGTTTTCATGGACAAATAGAACCTTCTTCTAGCTATC
CCTCAGGAAAGTGCTCCGGATATTGCTCAATATACTCTGGCTAGTCTAGTTATGAAGTTTCTGAT
ATGAGCTATACTGCGTGGAGTTATTCAGTTTCTGAGCTCTACTCC
Right flanking sequence: Indices 640090 -- 640589
ACATCAACTGGGCTCCGATAGAGTTCTCAAGTTGTCTCTATCTAAAGTTTTGTCTATATCTCTGG
CTTCGATATCTCGATATCTATGTCCCTTAAAAAGGTTTTCCCCCGTACCCCCTTTCCCTATCTAT
GAAACAACCTCAATCTCACACCAGGAACAAGAGATTCTAAGAAGAGTGCTGCTATCAAGCCAGCT
ACACCACCGATCTAACACAAACAACAGATAGAATCATTATGCGCGTAACTCTTATGCATGTCTTA
CTCATTATGAGGTTTACCTTTACTCTATCCAATCTATTAACCAATCCTATAATTAAACAATCTAT
CTAGTTCTATCTAGTTCTATCTGTAGCTATACTGTCTAACTGTAGCTATACTCTCTTACTGCAGC
TATCTTCCCTGTAGCTATATTATCTGTAGCTATGTTCCCTGTAGCTATGTTCCCTGTAGCTATAT
TCTCTGTAGCTATCCTATCCTCTTTCTTTAGGAGCCGCTTGACTT
Found at i:640425 original size:10 final size:10
Alignment explanation
Indices: 640410--640436 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
640400 AATTAAACAA
640410 TCTATCTAGT
1 TCTATCTAGT
640420 TCTATCTAGT
1 TCTATCTAGT
640430 TCTATCT
1 TCTATCT
640437 GTAGCTATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.22, G:0.07, T:0.52
Consensus pattern (10 bp):
TCTATCTAGT
Left flanking sequence: Indices 639910 -- 640409
CTCTGGCTAGTCTAGTTATGAAGTTTCTGATATGAGCTATACTGCGTGGAGTTATTCAGTTTCTG
AGCTCTACTCCGTTATCCAGAATCCGAGGGAACCTCCAGATAGTAGTTATCCAGAATCGGACGTA
ACCTCATCAATAGAGTTATACCGGATCCGAGGAAACCTCAATAGAGTTATACATCAACTGGGCTC
CGATAGAGTTCTCAAGTTGTCTCTATCTAAAGTTTTGTCTATATCTCTGGCTTCGATATCTCGAT
ATCTATGTCCCTTAAAAAGGTTTTCCCCCGTACCCCCTTTCCCTATCTATGAAACAACCTCAATC
TCACACCAGGAACAAGAGATTCTAAGAAGAGTGCTGCTATCAAGCCAGCTACACCACCGATCTAA
CACAAACAACAGATAGAATCATTATGCGCGTAACTCTTATGCATGTCTTACTCATTATGAGGTTT
ACCTTTACTCTATCCAATCTATTAACCAATCCTATAATTAAACAA
Right flanking sequence: Indices 640437 -- 640936
GTAGCTATACTGTCTAACTGTAGCTATACTCTCTTACTGCAGCTATCTTCCCTGTAGCTATATTA
TCTGTAGCTATGTTCCCTGTAGCTATGTTCCCTGTAGCTATATTCTCTGTAGCTATCCTATCCTC
TTTCTTTAGGAGCCGCTTGACTTCGTAGGACTCGTAAGCTACAGTAGCCGCTATACTCGTTCAGT
CAGTGAACCTCGCCTAATCCCAAGCCTCACTCCTAAAGTCGTTCCCATTGGGCCGGCGATACCCT
CCTTCTCTTGTTAGCTACAACCTCTTTGTTACTCGCTTATACTTCGCTATCGCTCGTATAAGGGA
ACCGCTTACACTTCGCTGGCGCTCGTTAAGCTACAATTAGCCGCTTTTACTACGTTCCCTACGGT
CACTCGTGAAGCTACAAGGAGAGCTAAAGAAACTCCGGATACTGCGTTCGCTAGCGCTCACTCGT
TCCTCGTTCTTCTCTTAAGAATTCTTCTTAGAGGGCTCTCCTCTA
Found at i:640457 original size:19 final size:19
Alignment explanation
Indices: 640430--640482 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
640420 TCTATCTAGT
* *
640430 TCTATCTGTAGCTATACTG
1 TCTAACTGTAGCTATACTC
640449 TCTAACTGTAGCTATACTC
1 TCTAACTGTAGCTATACTC
* *
640468 TCTTACTGCAGCTAT
1 TCTAACTGTAGCTAT
640483 CTTCCCTGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.40
Consensus pattern (19 bp):
TCTAACTGTAGCTATACTC
Left flanking sequence: Indices 639930 -- 640429
AAGTTTCTGATATGAGCTATACTGCGTGGAGTTATTCAGTTTCTGAGCTCTACTCCGTTATCCAG
AATCCGAGGGAACCTCCAGATAGTAGTTATCCAGAATCGGACGTAACCTCATCAATAGAGTTATA
CCGGATCCGAGGAAACCTCAATAGAGTTATACATCAACTGGGCTCCGATAGAGTTCTCAAGTTGT
CTCTATCTAAAGTTTTGTCTATATCTCTGGCTTCGATATCTCGATATCTATGTCCCTTAAAAAGG
TTTTCCCCCGTACCCCCTTTCCCTATCTATGAAACAACCTCAATCTCACACCAGGAACAAGAGAT
TCTAAGAAGAGTGCTGCTATCAAGCCAGCTACACCACCGATCTAACACAAACAACAGATAGAATC
ATTATGCGCGTAACTCTTATGCATGTCTTACTCATTATGAGGTTTACCTTTACTCTATCCAATCT
ATTAACCAATCCTATAATTAAACAATCTATCTAGTTCTATCTAGT
Right flanking sequence: Indices 640483 -- 640982
CTTCCCTGTAGCTATATTATCTGTAGCTATGTTCCCTGTAGCTATGTTCCCTGTAGCTATATTCT
CTGTAGCTATCCTATCCTCTTTCTTTAGGAGCCGCTTGACTTCGTAGGACTCGTAAGCTACAGTA
GCCGCTATACTCGTTCAGTCAGTGAACCTCGCCTAATCCCAAGCCTCACTCCTAAAGTCGTTCCC
ATTGGGCCGGCGATACCCTCCTTCTCTTGTTAGCTACAACCTCTTTGTTACTCGCTTATACTTCG
CTATCGCTCGTATAAGGGAACCGCTTACACTTCGCTGGCGCTCGTTAAGCTACAATTAGCCGCTT
TTACTACGTTCCCTACGGTCACTCGTGAAGCTACAAGGAGAGCTAAAGAAACTCCGGATACTGCG
TTCGCTAGCGCTCACTCGTTCCTCGTTCTTCTCTTAAGAATTCTTCTTAGAGGGCTCTCCTCTAC
CCCCCCCATAAGGGTCCCCCCTAAAAATGGTTAGGAACCCCGTAA
Found at i:640497 original size:15 final size:15
Alignment explanation
Indices: 640477--640557 Score: 108
Period size: 15 Copynumber: 5.4 Consensus size: 15
640467 CTCTTACTGC
*
640477 AGCTATCTTCCCTGT
1 AGCTATATTCCCTGT
**
640492 AGCTATATTATCTGT
1 AGCTATATTCCCTGT
*
640507 AGCTATGTTCCCTGT
1 AGCTATATTCCCTGT
*
640522 AGCTATGTTCCCTGT
1 AGCTATATTCCCTGT
*
640537 AGCTATATTCTCTGT
1 AGCTATATTCCCTGT
640552 AGCTAT
1 AGCTAT
640558 CCTATCCTCT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 58 1.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (15 bp):
AGCTATATTCCCTGT
Left flanking sequence: Indices 639977 -- 640476
CTCTACTCCGTTATCCAGAATCCGAGGGAACCTCCAGATAGTAGTTATCCAGAATCGGACGTAAC
CTCATCAATAGAGTTATACCGGATCCGAGGAAACCTCAATAGAGTTATACATCAACTGGGCTCCG
ATAGAGTTCTCAAGTTGTCTCTATCTAAAGTTTTGTCTATATCTCTGGCTTCGATATCTCGATAT
CTATGTCCCTTAAAAAGGTTTTCCCCCGTACCCCCTTTCCCTATCTATGAAACAACCTCAATCTC
ACACCAGGAACAAGAGATTCTAAGAAGAGTGCTGCTATCAAGCCAGCTACACCACCGATCTAACA
CAAACAACAGATAGAATCATTATGCGCGTAACTCTTATGCATGTCTTACTCATTATGAGGTTTAC
CTTTACTCTATCCAATCTATTAACCAATCCTATAATTAAACAATCTATCTAGTTCTATCTAGTTC
TATCTGTAGCTATACTGTCTAACTGTAGCTATACTCTCTTACTGC
Right flanking sequence: Indices 640558 -- 641057
CCTATCCTCTTTCTTTAGGAGCCGCTTGACTTCGTAGGACTCGTAAGCTACAGTAGCCGCTATAC
TCGTTCAGTCAGTGAACCTCGCCTAATCCCAAGCCTCACTCCTAAAGTCGTTCCCATTGGGCCGG
CGATACCCTCCTTCTCTTGTTAGCTACAACCTCTTTGTTACTCGCTTATACTTCGCTATCGCTCG
TATAAGGGAACCGCTTACACTTCGCTGGCGCTCGTTAAGCTACAATTAGCCGCTTTTACTACGTT
CCCTACGGTCACTCGTGAAGCTACAAGGAGAGCTAAAGAAACTCCGGATACTGCGTTCGCTAGCG
CTCACTCGTTCCTCGTTCTTCTCTTAAGAATTCTTCTTAGAGGGCTCTCCTCTACCCCCCCCATA
AGGGTCCCCCCTAAAAATGGTTAGGAACCCCGTAAAGCATTTTGGATTTGAGGATGCAGGCCTAA
AAGGAAAAGGGCTACGCTAAAAGATCGAGTTTTTTCGGATTCATA
Found at i:643928 original size:39 final size:39
Alignment explanation
Indices: 643871--643968 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
643861 ACTGCCGCGG
643871 GAGATCCTACAGATACGTTATTTACTGCCGCTGAGAAAA
1 GAGATCCTACAGATACGTTATTTACTGCCGCTGAGAAAA
* * *
643910 GAGATCGTACAAAAACGTTATTTACTGCCGCTGAGAAAA
1 GAGATCCTACAGATACGTTATTTACTGCCGCTGAGAAAA
643949 GAGATCCTACAGATACGTTA
1 GAGATCCTACAGATACGTTA
643969 CTTCAGGAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (39 bp):
GAGATCCTACAGATACGTTATTTACTGCCGCTGAGAAAA
Left flanking sequence: Indices 643371 -- 643870
AATGCAATAAGTTCTGTATAAGACTGACTGCCAAAAGTGCCAGCTGGACCTATAGGATAAGGCTG
CCTACGTACACCAAAAGAGGATCGAAATCAGATTAGAGAATCGCGCTTTTACCGGCGTGACTATT
AGCGACCCAAAGACGACCAAAACTGTATTACCTTCAATGATCATCATTATCTTTCTAACCAAGAG
GGTTATGCCTTGCATGGCTAATATGCACAGTACTACTATGGGATCCTACGCTCTAACTAGTATGG
GACCCTACCTTTTATTCATTCCATTTGGTAGAGCTTTTTGGCCGGTTGTGGGCTCGGAGGGATTC
CCCGACATCGTGGTTCGTAGCCACGTGCTCGAATCCTCTGAGTGTATTTGTGAGGCAGGGATACG
TAACCTCATCCAACTTCGCTAGATCGTTCAGGAATGGGTTCTGTATTGGTTCTCCTTTTTTGATC
ATATCCTTCGGGAGGGTCTCAATGATTCTTTATTTACTGCCGCGG
Right flanking sequence: Indices 643969 -- 644468
CTTCAGGAAGATGGTATTACTATTCGTAATGATGTGAGTAAATCGATATTTACAAAAGTATATAA
ACAGCGAGTATTCCAATTACTCGAAGATAAGAAAAGTGCGGCAGCTATCTCCGGTTGATTTCGAA
AATCTTCAGCATGAGATTGAATCTCTGACTATGTGTTTTAATGAAGCTAATATCTTTTCTTCATG
CTCCGCTATTGTAAAGATTCTCACTTCTGGAAATCAGATGAGTGCCAAGGATTATCTTAAGTCTA
AGCCTAAGCCTAAGTCTAAGTTTCCGTTGCCTTTTTCTAAAAAAAGAGGTTTGAGAAAAGGTAAA
TGAGGTTGGTAGTCAAAACGCCCGATAATGGTTTATCAGATTTCGAAATAGGTCTTTTAGATCAC
TTCGGTCATCATACACTTGAAGCTTTATTAATTCATATTCTGAGCACTCTCTTTTTTTCTTCAAA
TTCTGTGAAAGTGGCTACTTTAGTGGATCGAATAGAAAGGGTAGT
Found at i:650480 original size:17 final size:17
Alignment explanation
Indices: 650338--650481 Score: 108
Period size: 17 Copynumber: 8.5 Consensus size: 17
650328 CGCTATTTCG
* *
650338 ACTTCATATCTATTCAT
1 ACTTCATATCTCTTGAT
* *
650355 ACTTCATATCTATTCAT
1 ACTTCATATCTCTTGAT
650372 ACTTCATATCTCTTGAT
1 ACTTCATATCTCTTGAT
* * *
650389 ACTTGAGATCTCTTGAG
1 ACTTCATATCTCTTGAT
*** * **
650406 ACGGGATATATCGGGAT
1 ACTTCATATCTCTTGAT
* *
650423 ACTTGATATCTCTGGAT
1 ACTTCATATCTCTTGAT
* **
650440 ACTTGATATCTCGGGAT
1 ACTTCATATCTCTTGAT
* *
650457 ACCTCATATCTCTTGAA
1 ACTTCATATCTCTTGAT
650474 ACTTCATA
1 ACTTCATA
650482 CTTGATATCT
Statistics
Matches: 104, Mismatches: 23, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 104 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (17 bp):
ACTTCATATCTCTTGAT
Left flanking sequence: Indices 649838 -- 650337
GATAGATATCCTTACTTTAGTTGCTTGTGAGAAGTAATAAGGTTAAGACCGATATTGTATTGCCT
GCTTATTGAACCCTTTGGTTTAGGAATTCATGCATGTTCAAACAAATGTATTACCTTTTGTATAC
TACTTAGAGAAATGGGCTATTTGCTACGAAAAAAGCCCTGTTTTAGCAACAAATTTAGAGAGGTT
GCAAAATGACATAATATAGGATATTATAAATAAAACCTCTCGTCAAGTCGTAGAATTGAGAACTT
TTAGGAAGGAAACGCTTACTTTTGGCCCATGTAAAACGCAAGTTTTCTATTGATAATCGCATTTA
TTTCCAGAATTGAATGATGTAGATACTTGTACTTGTACTTGTAATTGTAAGACACTCGACCATTA
GGAAGAGGGTTTTAGTCTGTTTTTGTTGCAGGGTTCCTAACCATTTGTTGATAGGGCGATAGATA
GCAACATCTAGAGCCAGAGATAGAGATAACTGGTACGCTATTTCG
Right flanking sequence: Indices 650482 -- 650981
CTTGATATCTCGGGATACTTAATATCTCTTGCTACGCATAGCCCAGTTGATGGATAACTATACAG
AACAGAGATTTCTATTTCCTTGCTTTACTCTATTTCTATTTCTATTTCCTTGCTTTACTCAAGTA
GAGGTACGAAGGGTTCTCCCACTGAGGGAGAGGTATTTCCCGAAGGACTAGACTTCCCATCCAAG
GAGCACAGCCCTCGACAAAAGGAGAGGAGGTTTATCTACTCGACGGATAAGGAGAGTTATTTCCC
GAAGGACTCGACTAATAATCCAAGGGATCTATGACTCGACCTGCCGGAAGAGGGAATTTCTACAC
TCGACCTAAAGCCTAAAGGGAGAGTTTGATATTGAACCCAAAGGTTTCCATTTTCTAGTATCTTC
AAATAAGTGTGTTACCTTTTTTCTCCTACTCCGATAAATGGGACATTTGCAACAAAAAAAGACGT
GTTTTAGCAACTAATTGATATAGAAGGATTCTTGACATAATATAC
Done.