Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_022666
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 476091
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:25632 original size:22 final size:22
Alignment explanation
Indices: 25563--25633 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
25553 TGGCTGCAAC
* *
25563 TGACAACTCCTGCATCTGAGAT
1 TGACAACTCCTGCAACAGAGAT
* *
25585 TGACAACT-CTAGTAACAGAGAA
1 TGACAACTCCT-GCAACAGAGAT
*
25607 TGACAACTCCTGCAACAGATAT
1 TGACAACTCCTGCAACAGAGAT
25629 TGACA
1 TGACA
25634 GAGCATGACA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 2 0.05
22 36 0.90
23 2 0.05
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (22 bp):
TGACAACTCCTGCAACAGAGAT
Left flanking sequence: Indices 25063 -- 25562
ATAACCAGATAGATAGAATGATAACAGGTAATACGAAGATATCAACACAGCCGGAGTCACGAGGC
TCGATAATGACCAATGGGTTAGGATCTGAGGAAGCTTAGTTTGGATGATGGAATATTCGCTGTTC
TGATTGTTGAGATACTGCAAATCCACTTATCCAACAATTTCAGTCCATTTTCCTACTTTTTCTGC
AAGGGGGGGAAAGCATTATTATATCCTTAATATGACTCTCTGTCACACGGATGCTGCTGGGCTGC
TACAAAACCCCTATAGTCGAAAAAAAGATCGAAACAGGGATAAAACGTAGGATAACCCAGATCAC
TCGGACTAGCTGAACTCTCCAGAACAAACACAACCTAGGTGGTTTGACTAACGTTTTGGCACATT
AGACTAACCTAAGACAACTCCTGGCTACATTCAGTCCTATCGAGATACAAGCTGTTACCAACCTG
ATACAACGCAAGTCACAAGCTTGACACAGCGAGAATGGCTGCAAC
Right flanking sequence: Indices 25634 -- 26133
GAGCATGACACTCTCAACTGAGCTCAATCCAGCTGTGAACAATAAACAACACTGAAAGTAAACAA
CACGGTTATCACAAAACTTGGATTCCGGATTACAACACTATAGGCAATGAACCACCACTAACGGC
CCATAACGTTAGCTGATAGCCGCTGACCGTGGAGTACTTGCCGATCCATCAGCGAGGACTGTATC
ATTTAGCGAGCTAAAAACTTAAGGAACATGTATGTGAGAGTTCCACTTTAGCTCCCTCAACACCA
GGCGGGACGAGCAGCCCTATACCACGTGTAGCCACACTCTAGTGTCCTTTTCTACTTAGTTGGAC
AGATCACTTCAGAAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTT
TCGCGCTAGTTGCTCAAAAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAAC
GGCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGCTTCTCTTCTGT
Found at i:26084 original size:70 final size:70
Alignment explanation
Indices: 25971--26110 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
25961 ATCACTTCAG
25971 AAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTG
1 AAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTG
26036 CTCAA
66 CTCAA
26041 AAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTG
1 AAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTG
26106 CTCAA
66 CTCAA
26111 TCCGTTGCTT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (70 bp):
AAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTG
CTCAA
Left flanking sequence: Indices 25471 -- 25970
TCCTGGCTACATTCAGTCCTATCGAGATACAAGCTGTTACCAACCTGATACAACGCAAGTCACAA
GCTTGACACAGCGAGAATGGCTGCAACTGACAACTCCTGCATCTGAGATTGACAACTCTAGTAAC
AGAGAATGACAACTCCTGCAACAGATATTGACAGAGCATGACACTCTCAACTGAGCTCAATCCAG
CTGTGAACAATAAACAACACTGAAAGTAAACAACACGGTTATCACAAAACTTGGATTCCGGATTA
CAACACTATAGGCAATGAACCACCACTAACGGCCCATAACGTTAGCTGATAGCCGCTGACCGTGG
AGTACTTGCCGATCCATCAGCGAGGACTGTATCATTTAGCGAGCTAAAAACTTAAGGAACATGTA
TGTGAGAGTTCCACTTTAGCTCCCTCAACACCAGGCGGGACGAGCAGCCCTATACCACGTGTAGC
CACACTCTAGTGTCCTTTTCTACTTAGTTGGACAGATCACTTCAG
Right flanking sequence: Indices 26111 -- 26610
TCCGTTGCTTGCTTCTCTTCTGTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAA
GAGAGGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTCCGCTCATGTTCGACGCTA
TCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAG
GCCATGGGGAGAGATTTTTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGT
GGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAA
GGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAG
AAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAG
CGTAGTTAGAAAAGTTGCCGTAGCGCGCCCTACGGAGTTGTACAA
Found at i:29860 original size:13 final size:13
Alignment explanation
Indices: 29842--29866 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29832 ACAACAGAAC
29842 AATGAATGAATGA
1 AATGAATGAATGA
29855 AATGAATGAATG
1 AATGAATGAATG
29867 TGGGCGGTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (13 bp):
AATGAATGAATGA
Left flanking sequence: Indices 29342 -- 29841
CTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATG
AAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGT
TAAAGGGAGAACTGCGAGGAGCCAGCCCTAGTACGAGAGGACTGGGCTGGGTCAACCTATGGTGT
ACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGCTGCGCCGCG
GGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGT
GTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAATGGAAATTGACAACAATAAAAAAA
ACATAACTTAGAAAGAGAGGTTCTGAAAGGTAAAAGGACTGGAAATCCTAAAAAAGCGCCCTTTG
ACTCGAAATCAAATTTGTGCTAGTGGTTCGAATCCACAACAGAAC
Right flanking sequence: Indices 29867 -- 30366
TGGGCGGTCCCCAGACGACAAGTGTGTGATCAGAAGCCTTTCCTTTAGCTGTTTATACAGGAACG
AATCAATCAAGTTTCTACTAAAACAGAACTCTAGAATCAGTCCGTCCGGTTAAGCATTGGGGAGC
TGATAGGTCGAACGGAGTGGTGCCAGAGCTCTAAAGTGGCTCTAAATATCCATTTCTTTGATTTT
CCTGTGTGCTTTTTAGGCGGCTATCTATATTAGCCAGAAAGCACTTACATTTGAGACCGGGCACT
TCGTCATCAGGTGGAAAAGAACGAACGGACATTTCCGATCTTTTGTATTCGATTCGGATCTCTAT
TCAATGTGTTTTCAATACCCTAACCTCCAAGGGATGAGACGCCCACGATACCCAATAGTGCCAGC
CAAACCAAGCTAGTACACCATCCAGCCAGAATAAAACAAAGGAAAAGAAATAGAACGTACCTCCT
TAAATAAATATCTCACCTATCAAACTCAAGCAAGAGTCGAACCGC
Found at i:59120 original size:12 final size:12
Alignment explanation
Indices: 59103--59127 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59093 AGAAATGGCG
59103 AGCTATTTAAGA
1 AGCTATTTAAGA
59115 AGCTATTTAAGA
1 AGCTATTTAAGA
59127 A
1 A
59128 ATGTGAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (12 bp):
AGCTATTTAAGA
Left flanking sequence: Indices 58603 -- 59102
CAGTTCTTGTACGGAAGGCCGTAATTCCGGTAACCTCGACTGCTCTAAGAATGATCCGGGCTAGC
CGGGCACATCACATCAAAGTTAGGTCATTTGTCAAAAACATGGCAAATAGCTCAGTTGGTTTGGT
AAGGGAGCTATTCTCTCACTTAAACCACTCCCATATTAGGTATTCTATCTCGTCTTAAAGTTCCC
CCGCATTACCCATAACTTACCACCTGTATCTCCGGAACTCAAATCGCAAAATGACAATGCTTTCG
ATAGTCTGTACTAAATTACTTTGTACGAATGCACATCTCGGCCGTCGGGTAGCTGATCACCATTT
CAAAGTCTATATCCGTGGTTCAAGAAATGGAATTGCTATTCTCGATTCAGACAAGACACTGATTT
GTTTACGAAACGCTCTTCATTTTATAGGATCTCCCAGTCGTCAAAAAGGCCGTTCCTTCTTTTTA
AAGACCAATCATTTATTTATTTATGAGATAACGGAAGAAATGGCG
Right flanking sequence: Indices 59128 -- 59627
ATGTGAATTCTCATTGTTTCGATGATTCTCAATGGAAGATCGGGGCGTTTTTGACCAATTCTTTT
GCAAATAAAAAAAAATTCCGTTCAAGAAAGAAGAAGATCAATTTTGGGTTGAACCAACAACCTGA
TTGTGTGGTTATTCTGAATGCAGATAGAAAGTCTTCGGTCATACTGGAAGCTGATCGATCACAAA
TACCTATTCCATCCTTAGTTGATTCTACGATCCCATGGGAATCCTATAAAAGAATCACTTATCCC
ATCCCAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTCATTCGATCATGAAAACAGTGAT
TCTTGAACAGAATGCGATTAGTAGAGAAGCGCAATCTCTCAGAGTCACTTTGAGTACGGGGAAGT
CCGCAGGAGGGATGAGATCCGCCTGCTACTCCACCTCTTCTTCTTCCCCAATAGACGAAGAAGAA
AATAGGGCCAAGGCGCTATTGGAGATGCGCAAAAAATATCCATCG
Found at i:85484 original size:19 final size:19
Alignment explanation
Indices: 85460--85500 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
85450 ACTGCTCGCG
* *
85460 AGAAGCATGGGGGGAGTCT
1 AGAAGCACGGCGGGAGTCT
85479 AGAAGCACGGCGGGAGTCT
1 AGAAGCACGGCGGGAGTCT
85498 AGA
1 AGA
85501 TAGAAGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.44, T:0.12
Consensus pattern (19 bp):
AGAAGCACGGCGGGAGTCT
Left flanking sequence: Indices 84960 -- 85459
AAGCAAGCTAGACACGAAAACTCAGGATAGACGCGCTGCTCTTCTAGCTTTGGTTGGAAATAGAA
AAGCAAGTTATAGGGCCCATGCTGCATTCCCTCAAACCTTCCACTGAAAAGAGCAGATCCCAGAA
AAAAGGATAGCGAATGATCGATTCACCATTGATAGCATTAACCCTAAAAGGAGGGATGAAGCACA
TGCCACCACATCCACTAAAGAGAAGGAAAAGAGAAAAGAGAGGCGCCAGGTCCAAGAAGGTATGG
AAAAGGCATTAGAGGTTTGATTCGCTCAAGGTTTTGAACAACAAGTCAGGTAAACCACCAGTTAA
TACCAACCACGGTTGACTTGATTTTCGATAGATTGAAATGCTTTCAAATTCAGCATGGTTGTGAG
ATTAATCGTACCCACCCGGCTAGGTCACCTGCGAGACTCGCTAATATACTACTTTCTTTCAGGCA
ATGAAAAAAATATGGTTTCTAGTACCTCACTAACCACTGCTCGCG
Right flanking sequence: Indices 85501 -- 86000
TAGAAGGGTTTTCAATAATGGTGGTTCGTTGCCTCACCGTAATAAGTGCCTTAGTACTTTCGAGT
CTAAGGGGCGTGAGTTAGAGGCACAATATTCTTTCTATACAGTCAACTAGCAGCCCTAGCTAATT
GAGCATCAATCACTATTTCTCTAAGTCATAACTAGTACCTCCCTTGTGGCGAAACCAATGGTTCA
CTTGATTTCTAAAGAACAGCTTTCGTCGTACGGCAGGGCCCAGGATATATATGCCCTTCTCTTCA
TTGCTTTCCTGAAATGCGTAAGTAATCACCTTCGAAATGGTACCAAAAGGCCGGCTCAAATCGTC
TATTACAGCCTGGTGGAACCTATTCTTCGACTACTTCTTCCTTCGACTAGCGTGCTTAGAGAAAA
TACAACGGTACCTATATAGCTCGCTGTTGAAATTGTAGTTTAGGTGGACTGTATGTCTTTACATC
TTCTCTGGCCGATCGGGGTCTCCAAAGTAAGCAAAAAAAGGAGTA
Found at i:93497 original size:21 final size:21
Alignment explanation
Indices: 93471--93513 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
93461 CAAGGCCTAA
**
93471 TCGACCTTCTAGAGCAGATTC
1 TCGACCTTAAAGAGCAGATTC
93492 TCGACCTTAAAGAGCAGATTC
1 TCGACCTTAAAGAGCAGATTC
93513 T
1 T
93514 ATACTAGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (21 bp):
TCGACCTTAAAGAGCAGATTC
Left flanking sequence: Indices 92971 -- 93470
TCAACTATAGGAAACTGGCTTGGTAAAGGTCAACGGTCCTGTTCAAGCATTGGCGCATAACGGGA
GGCTAGCTCAGTAGATTAGTTCTTTAGTTTAGGAGTGAATGCTTTGCTTTCTTTTCTTTGATCTA
CTCGTTCATGAATTCCATCAAAATAGTAAATAGAAAGAATTTCAAATCACCAATCATACATAATA
TGCAATTCTTGTGAACGAAAGAGATATCCGATTTGAGAGTCAGGACCTTAAAGCTGATTATGGTG
AATCCGGTGATAAGACTGGCAAAGCTTCTTTGCTCTAGGTAGAGGCGGCTGTGCTTTTCATTTTC
TTTGATCTTTCCGCGAGGGCCTCTGCTTTCCTCGAACGATGACTGAGGAAACACATCCAACCTCG
AATGCTGAGACAAGACCGGGCACACTTCTATAATATAATTAAAGTAATATAAGAAAAGGGCCGAG
AACTTTGATACCAGTGGAGTGCGATGACATGATGACAAGGCCTAA
Right flanking sequence: Indices 93514 -- 94013
ATACTAGACTTGTGGCTTCAGGAGATGAAAAGCTTGATGAACCCCGACCCACTAGACCAAGTGAG
TGATGTTGCATTTCGAGCACAGGCACCTTTGACCTAGCTTTCGACAGAGAGAGACAAATGGGAAT
GCCAGGCACAACTCTTTGCTTTGAAGCATGAGAGAACGATAACATTTCCACTGCTTTAGTTGCTA
GAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTAGTACTAATCCCATTCCTTT
AGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATTTCCTTGCTTCATAGGTTTC
AGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGGCCCGGTGGAGCAATCTCGA
ATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTCCAAGTGGGTCGAATAGGAC
TAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGGGA
Found at i:95931 original size:16 final size:16
Alignment explanation
Indices: 95910--95941 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
95900 ATATCTACAT
95910 GAAAGGAAAATGAATG
1 GAAAGGAAAATGAATG
95926 GAAAGGAAAATGAATG
1 GAAAGGAAAATGAATG
95942 TGATGTACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.31, T:0.12
Consensus pattern (16 bp):
GAAAGGAAAATGAATG
Left flanking sequence: Indices 95410 -- 95909
AGTTCAAGTGCTCTAGTCAAGTAGTAAGCTCCAGTGGGAAGCGCTAGTCCAGATAGAAAGAATAG
ACAGGAGGATTGCCAGGTTGGTCCGCACAGGTGCATATCTGTAGGTTTCAGCACGGGATTCCAGA
TCGTTGGTACCCGATGTTCAGTTCATGGGAATGGGAATGTAGGAAACTCTCTCTTCCGTCCGGAA
CATATAGATAGATTGATTGCTGTAGCAGCAAGTCAACTAGATCCAGTGAGGAATGAGAACCTTTC
CGGGGGCAAGGGGGGGCGAAGCTACTAGCTACTATTACTATTGGCTATGGATGTCCTAACACGAA
CGGAGTCTATACGAGCAGAGGAAAGCGAAGCGTATTGGTTGGTTCGGATTTCAGAGTGCACTGGT
TCTATTCTAACTAGACTCGCATCATAAGTTTGCCTGCTTTAAAATCCCGCGAAAGTACTACTGGC
AGCTCCTATATGAGGTTGATGCCACGAAGATTATCATATCTACAT
Right flanking sequence: Indices 95942 -- 96441
TGATGTACACTAGAAAAGATACCAAGCAAGAGGATGTGCGCAACGTCGCGCTCGAAAGTCTTGTC
TATGAAACCAAACCCTAGTTCCGTGAGGAGGAAGACTCTCTTCGGTCGAGGGATGGATGGACTAG
TGCCGTAAGGATGAGTGATGCTAGAGGGAAGTAGATCAATAGGTGCCGCTTGCTTACTACAGTGA
CAAGGAAATCAAACAAAGTAGTGGCCAGGCCAGGCTCAAGAATGGGAAAGTAAAGTTCTAGTACG
GCTATCGCGATGTGGCCAATGGATAATAAAAAACTTGCTAACCCAACCCAGCAATCAAACAGATG
CTAGCAACGGCTTTCTAGCTAGAAAACCAAGCCTTGGATCTCCACATAGAAGACAATTCATTCCA
ATACCAATGAAGCTAAGGCAATAAAGCAAAGGCAAGTTCCAATTATGTAGTGTAGTCGCTCTCAT
CCCCAAAAGGAAAGAAGATTTTTGGATTTCACCCACTATTCGTTC
Found at i:127085 original size:35 final size:35
Alignment explanation
Indices: 127046--127114 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
127036 TGTATACCAC
127046 CTACGAATAGGAAGATCCTGGGTTTTGTAAGAAAA
1 CTACGAATAGGAAGATCCTGGGTTTTGTAAGAAAA
127081 CTACGAATAGGAAGATCCTGGGTTTTGTAAGAAA
1 CTACGAATAGGAAGATCCTGGGTTTTGTAAGAAA
127115 TCCAATTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (35 bp):
CTACGAATAGGAAGATCCTGGGTTTTGTAAGAAAA
Left flanking sequence: Indices 126546 -- 127045
TCCCTGTTTCGGATTTGCATATGTCTTTAATCGCAATAGTTGTAGAGAAATCCCTCAATCACGGG
ACAATCCTCCAGGGCAAAGGTACTTCCAAAGCTCAGAAGGTTCATCTGTGCATGAAAGGAATGAA
ACAAATTCCATAGAAAAAATAGGAAAATCCCCACCGAGATCGGTACCTATCTAGATCCCCAGCTT
CGACAACAAAACTCCTTCGCATTTTGCGACCATTCCCGCGAGGACTACGATTCGGATTATCTAAT
GTCATCCCCAAACAGAATTACACCTCTTAAGAGGAAGGGACGGCCCTCTATCCGGTGTGGGTTCC
TACGAATTATTGTATGGTTCCGGATCCAGGTCCCTCTGCCCTTGCTTTTTGTTATTCCATAGGGG
TATGGATTGAAGTAATCACTAATCCAGGAAAGATGGATCTTTAGCTAGAAAAACGAAAAGCCAAT
ACGCCATGTATCAAAACAATAGGGATAGGGGTAGTTGTATACCAC
Right flanking sequence: Indices 127115 -- 127614
TCCAATTTCATCAATTCTAAGCACGGTAACGGCAGTGCTCCTATCCAACGGCCGGGGATCTATTC
GATTTCTCAATTTGCTAATGCCGATAAGCTTAGGTTGTTATTTCATCGTCTTGCGCTAAAAAGGC
ACCCTCCTATTATGCTAACAAAGGGACGGATAACGGCAAAGCGGAACAGCAATAGCGAAAGCAGG
TACAGTAACGGCGCAATCCCTAAAAAAAGAATCAAAATAGAGAAATTTAGAGCGCTGCGAATTTC
CTTCTTTTGATAATGCTACCCACACAGTCACGGCTCCTATCCGGTCACCGGGTTAAACAATTGAT
TCCTCTCAACGCATCCCCGCGGTAAAGAGCTAGTCGTATTCTTTTGATAATTCTCTAGTTGTATT
CAAGCAAGAGTCCTCGGCATCCTACGAAAACAAGCGCTAGGAATATCAATAGCGTTAGCGTTAGC
GTCCTGGCCTTTGCTTGGGGATTCCTCTATGGAATTCCAAACATG
Found at i:131865 original size:39 final size:39
Alignment explanation
Indices: 131818--131897 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
131808 TCTATATCGA
** * *
131818 CATATCAGTTGGAAAAATCATAGGCAAATTCCTATCGGC
1 CATATCAGTTGGAAAAAGAAGAGGCAAATTCCTACCGGC
131857 CATATCAGTTGGAAAAAGAAGAGGCAAATTCCTACCGGC
1 CATATCAGTTGGAAAAAGAAGAGGCAAATTCCTACCGGC
131896 CA
1 CA
131898 GAATCTGGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (39 bp):
CATATCAGTTGGAAAAAGAAGAGGCAAATTCCTACCGGC
Left flanking sequence: Indices 131318 -- 131817
AAGACTGATTCAACGAAATATGCCATGCCAGCATTAAGATTTAAAACGTGTCGTCTACTTCCAGG
AAATGTTCGGAACAGAGAACTTTCTCTAATCCAACGCCGTATTCTCCGAAGATTGAGGAACAAGA
GGAGATCCATTAAAAGAAATCTTTCTCGGAGAGAAAATCGAAACAGTAACATCAAATCACAAACT
ACACGAAAGTTGTCTCTTTATTATGGGGATTTACCCATAAGGGAGATGCACAGAGGAAGAGAACG
AACTTCATATATCCCTTTTTTACTCAATCAAGAAACAAGATCGGACGTGATTCCGGTTCGTCTCC
ATTTTAGTGACACTCTTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTTTGAATAAT
GGACTGGTAACCATTACTCATTTGAAAGTTTCCCACGGTGATCTAATATCTTTTAAAGAAAATGA
CGCGAGAACCCGCGGTTTTGAAATAAGGAGATCTTTCTATATCGA
Right flanking sequence: Indices 131898 -- 132397
GAATCTGGAGAAGAACAAAAAAAGAATGGTTCCGCTTACTCACAACTCAGAGGGGATGCCGCTTA
CTACTCAAATCCAAGGAATTGCAAAAGTTGCGTTCTTATATGCAAGAAGAAGACTTTGAAAGAAC
AAAGAAGTTTGGATCCGCAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGA
GGAATTTGTTTCATTTCAAATACTTCTTCTTATTGAAAAGAGGGAAGGAGAAAAACCGAAATCTT
CCTACTCGAACAATAAGTCCTTTTGTAGAAAAGTCTTCTTTATATAGTAATTCGACCTATTGCTC
CGGATCCCCGTTTACTAGGAAGATAAGAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGG
TGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGAC
ATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGA
Found at i:134598 original size:6 final size:6
Alignment explanation
Indices: 134589--134614 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
134579 CCCTTCTTGC
134589 TCTTAT TCTTAT TCTTAT TCTTAT TC
1 TCTTAT TCTTAT TCTTAT TCTTAT TC
134615 GGTGGAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.65
Consensus pattern (6 bp):
TCTTAT
Left flanking sequence: Indices 134089 -- 134588
GGTTCAGAGAAGTTTGTAAGCTCTTTCTCTTTTTTCGTTTTTCGCCACCTCCTGTGTCTTTCCGT
TTAAGGTCTTTAATTCGGCATTAGCTTCGTTAGAGAAAGCCATGCGTGAACTACAAAGCATGGGA
TCCTGAACACCACGAAAGAAAGCGTACTACTTTTCAATAAGGTCCGACTTCAGAGAGGAGAGACA
TGAACTTGTTTTAGGCGTAGAAAAGGCATACGGTATGAAAGATTGATTGAAAAGAGGTAGGGACT
GGTCTCGCTGCTAAGGGAGAAGGAGACCTCTGTCGGAGCAAGCTAAAGAGCCCACTTTATATCGT
CGATTTCAGGTAAGGCACTCGATCAAGCCTATACATCCGGGAATTTCGCTCCAAACCAAAGACGA
CTTGCTTTGCTGCATTTCTTGGGCCGGGGCTTTACTTGATTTTGGCGAAAGAAAGGCCATATGAT
CTACTTTCTGGTGCCGGTCCCTTCACAAAGATAGCCCCTTCTTGC
Right flanking sequence: Indices 134615 -- 135114
GGTGGAATACAAGAGTTCTGAAGCTCCTTTCTTTCAAGTGAAAGTTGCCTATCTTTCTTGGTTCG
GAATCCAATCCAGTTGAAAACAAACAATTGCCCGATGGCAAAGTCAGATGAAAGGCTAGGAGTGT
AAACCACGTACGAGCGTGGCGCAGAAAGCGAAATGTTTTGCAGCGAGTCAAGCGTAATACGATCA
AAAGGAAATGGGGTCGATGCTAAAACTCAAACAGTTCCCCAGAGGGGGCCCCGGGTTGAAAGAGC
GAGCTACATTCTTTCATAGAAGACAGAAAATAAGAGGACTGATGCTTTCTTACTTCATCTTAATA
TAGGGATTATAGCATTGGAATTATGGAATTTGAATGGATTGAGTACATCAAGATGAAGAAATTAA
CGTAATAAGCGATATTCTCAAAAGATTCGGTCATGCCAGAAACCTCAGTGTGCATGGCACTAAAA
AAGGGTACAAAGAACCTGAGATGCAAGTAATGGCTGAATAGCCGG
Found at i:145772 original size:17 final size:17
Alignment explanation
Indices: 145750--145783 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
145740 CCCTATCTAT
145750 CCCTAGAAGCAAATGGA
1 CCCTAGAAGCAAATGGA
145767 CCCTAGAAGCAAATGGA
1 CCCTAGAAGCAAATGGA
145784 GTAAGTCCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.12
Consensus pattern (17 bp):
CCCTAGAAGCAAATGGA
Left flanking sequence: Indices 145250 -- 145749
TTTCGTTCTATTGAAATCCTGCGTCGAGCCGATGTTTCATTGATCGATACCGGGCACATCCATCA
CATCAACTATTTCACTTTTCATACGCATTTATTGACGGACCGGTAAACTAGACCCGAAAAACTCC
TATTTTTAAAACGAAAGACCCATCACAAAATTATGGCGCAACGCTATGACGAGCGTTCTCACAGG
CCGGCACCTCGATGCATCCGTCTCAAGAGTTGTACACCTTACATGTGCTTCACGCCACAATCTCT
CACTTTCTGCTCCTCCATCTGTCTCCATCATATAATCGATCTCACCTCTCATGTCTGAGTGAAAA
AACCATATTTGTTAGTATATATCAAGGCCGAGAGGACACGTTCCTCTCATGTCGAGATTAGTATT
AGGGACCCTTAGTATTATTAACCGGTTACTATACGTACATGCAGTGAGACAATCAATCTATGCTC
TCATTCACATTTCATTCTAGCACTGACGACTCCAGCCCTATCTAT
Right flanking sequence: Indices 145784 -- 146283
GTAAGTCCGATGGAACACTCGGATTGGAAAAGATAATTATACTTATAGGCATGGATGAAAAAAAA
GCTTGGAAACTAGTTCAAATCGAACTCAAAAGCAACTAGGCAATCCAACTTCCATTGAAGCAGCT
TCCCTGGAACTAGCTGCCATTGTATCGGTTGGTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGA
TTAAGATTAGGCGGTAAGCGAAGGAACTGTAGGGCTTAGGGCTGCGGGTGAGCGCAACTTCAATA
GGTCGAGGGGAGGAAGAGAAGAAAAAGCAGCTATTTCACCTGGTGTCGTAATAACCACTGTTTTC
GGGTTTGAAGGCATAAGCGCAGCAGAGATCTTCTTTCATTTAAGAAGAAGCCACCGTAAAGAAGA
GGAAACAAGGCGTTTAAGGGACACCGACTCCCATTATTTTCTCCAGGCCTGCTTTGGCTAAATCG
ACGGAGGCTTAGCTTATTATGTTTCGGGCGTTTAGCTAGCTTAGA
Found at i:171216 original size:12 final size:12
Alignment explanation
Indices: 171199--171224 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
171189 CGTTGGAATG
171199 TATCAAAATCAA
1 TATCAAAATCAA
171211 TATCAAAATCAA
1 TATCAAAATCAA
171223 TA
1 TA
171225 AGATGAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (12 bp):
TATCAAAATCAA
Left flanking sequence: Indices 170699 -- 171198
GCTCTCCCTGGACTCTACGCAGGACTTCTTTCTAAGCCTCACATAATTTGAATTTCTCTGACATT
CCATGTTTCCGAAACGGATCCTATAAAATATTTCACTTTTTCTATGATCATCTCTATTTTAGGTA
TTCGGGGAATCCTCCTTAATAGACGAAATATTCTTATTATGTCAATGCCAATTGAATCAATGTTA
TTAGCTGTCAATTTGAACTTTTTGGTATTTTCCGTTTCTTTGGATGATATGATGGGTCAATCATT
TGCTTCATTAGTTCCAACAGTGGCAGCTGCGGAATCTGCTATTGGATTAGCCATTTTCGTTATTA
CTTTTCGAGTCCGAGGGACTATTGCTGTCGAATCTATAAATTGCATTCAAGGTTAAACATAACTA
CAGGAGAGTTACCAAATACAAAGTTCTGTTCTCCTTTCGTTCTCTTCTTTCTTTTCTTTTTGCCT
GAGTCAGACATCAAATAGCTTCGATTTGCATTATCCGTTGGAATG
Right flanking sequence: Indices 171225 -- 171724
AGATGAAAGATGTACAATCCAATTTCTCGATTCAATAGAAGCCCAAAGAGGTGCATATGGTACCC
AAATAAGAATAGGATAGATATGTCAAAAGCAGGTCTGATTACACCTATTCCTAATCCTAAATAGA
ATGTAAGGACGTAGGGATTTCTATGTAAACAGAGTATCCTATTTCCATAGGCTCGAATGACCCCT
TCTCATAATAAGAATGTGCACGGTCTGGTTCGGTATGGAATGAACTTAGAATCTGATGATCGAGT
CGATTCCATGATTCTAAGTTCATAACCCTAGCGCCCATTCCCATTTTGGGCGGAACAGATCTACT
AATTCTTTTATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGACCTAGCAGCTAAAAGAG
GGTATCCTGAGCAATTGCAAGAATGGGGTTCATTGATATTCCTGGTATAGTAGATGCTATCACAC
ATACAGTCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGG
Found at i:182891 original size:11 final size:11
Alignment explanation
Indices: 182875--182902 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
182865 GTCGTCATGG
182875 GAAAGAAATAA
1 GAAAGAAATAA
182886 GAAAGAAATAA
1 GAAAGAAATAA
182897 GAAAGA
1 GAAAGA
182903 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 182375 -- 182874
TGAATTACAGGAAATTCAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCCGAG
ATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGACGGGCACTCCAG
GACCCGCCTACGCTCGTGAAAACCCAGGTCGGTCCTCCGACCAGATGTGTGGATAACGAGGCCAC
CTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGGGCGGTTCGCTTGAGTTGCTCA
ACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACGGAACCTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 182903 -- 183402
GATTATTCCCCTAGAGCTTGTCCAGTACCACCAGTACTCAAAATGCATCTCCGCGCGTCTACCTG
GCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAG
CGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCTATTCCTGATAGAAGGATCATGGCGCC
CCGGAAGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATGTTAGCT
ACATTCGAGCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAA
AGGTCGACAAAATGATTCAATCTGACTTTCTCGGTATTCTGGATTGAGTAAAAAAGGGATATATG
AAGTTCAAGGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCG
AATAACAAACTCTTTCCTGCTCCCTCGACCTTAATTAACTCCCCC
Found at i:232279 original size:21 final size:21
Alignment explanation
Indices: 232249--232302 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
232239 ATCCAAGGGC
* *
232249 AGAGCAACGTAATCCAACGGA
1 AGAGCTACGTAATCCAACAGA
* * *
232270 GGGGCTACGTGATCCAACAGA
1 AGAGCTACGTAATCCAACAGA
232291 AGAGCTACGTAA
1 AGAGCTACGTAA
232303 ACAAGGAACA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (21 bp):
AGAGCTACGTAATCCAACAGA
Left flanking sequence: Indices 231749 -- 232248
GTAAGCAAACTCGGCTAATGTATCTCTATGCCTATTTAGTAGGCCTGCTCATTGATGCTCTTCGG
GCCGATTGTATGGGATGTGTTCTGGTGTACAGTGGGAGATGCAAGGATATCGATTGAAGTTTGAT
TTGTTGGCCATGGAGTTGGGAGCATATGATGTAGTCCTAGGAGTAGACTGGATGAGGAAATTCCC
TATTATTTCAATAAGTCTTTCCGTTGGTTGTAACTAATCACGTACCCGCTGCTGCGGAATTCCTT
TTACCTAACCAGGATTGCAGTAAAGATAAACAACGTTGGGCCTGCCTGCTTGTTCAGCACCACCC
ATTCCCATGGGAATATATGGGTTTTTCGGTCCAGTGGGAGGAGCATTTTCCTTTGAAGGTAATTT
TCCCAACCAATAAGTATTGGGCTCCCAAGTAAACAAAGCGAAGGATCAAGTAACCAACATGTTGC
GGAGCAGCCAAGTAAACCCAGAAATGACTCAAGTAATCCAAGGGC
Right flanking sequence: Indices 232303 -- 232802
ACAAGGAACACATGAACCTGCTAAGGATCCACTCCACCTGCCAAGTGGACCAATCACAAGAGCTC
GGGCCGAGAAATTCAATGAAGTAATCCATATGCTGATTCAGCAAGCCAAGCATTGGAGTTGGTAT
TCCAAGTTTCTTGAATAACCTAGCTGTCTGAAACTCGCCAATGGGATTCTGTGTAATCCTCCGGT
CTACATGGTGTAGGTAAAGGGCAAAAAAAAGTCGCTAATTAGTGGCACTGAAGTATGCACCCGGC
GTGTAAACTTCTTCTTTTTATTTACCAATGTCGCTATCCGACTGATCATCCTTTGAGACCACGGA
GAACATCAGAGAGAAAGATACGTCACCTAAAAAAAATTGACACCCTGACTTATATGAGTCGGCTA
GAAACTCAAGGCCTGGCCTTTTGTGGGAGAATGCTGAGTCCTTCCCAAAATCGCCTGGATCAACG
AAAGATCTGGATAACGCTAGGTTGTGATACTGATGTCTGATTTTA
Found at i:258417 original size:21 final size:22
Alignment explanation
Indices: 258388--258429 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
258378 TCTTTTTCTA
258388 TTTTGATTT-ACAAATGGTCCGG
1 TTTTGATTTCA-AAATGGTCCGG
258410 TTTT-ATTTCAAAATGGTCCG
1 TTTTGATTTCAAAATGGTCCG
258430 TACTTTTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (22 bp):
TTTTGATTTCAAAATGGTCCGG
Left flanking sequence: Indices 257888 -- 258387
ATCATCTCATCCATTTGATCGTTTGAACACTACACTGGAATTAATATCTTTGCGGAATCGTTGAT
CATACTTCGTGTGTACTAATTGAAATCAGTTGTGCATGTCCGTGCTGCTGCCGCCCCAGGACAAG
TGAAGTGCCCCCGTCGACTATGGAGGAGCTTTCGACGTCCGTGCCGCGCGATCGGTCGGGATCGG
TGGCCTTCAGTTCCTGCCGGATTTCCCTTGTGACGTTAGTCCTCGCAGCAGCAGCTGCAGCCTTG
ATCACGTTGCTGTTCTGATACATGCTTGTCTGACCTCGCTCTTGAACTTGTGCATGTCTGCTTCG
TCTTTCTTGATCGGTTCCTCGTGTTGCATACAATGAAGTGGTGTCATGTGACGCTGGGCATAATC
TCTGAAAACTCCTGACTGGTTCGGTGTGGTTTTGTTTATTCAACACCAATTGCCTTAGCTTTCTT
TTTCTGAAGGAGACAGAGAAGAGAGTAGCTAGATTTCTTTTTCTA
Right flanking sequence: Indices 258430 -- 258929
TACTTTTCGATCTTTGGGCTTATTAAGCTTAAGAATCTTACTTAATAGGAGAAAATAGCCTCCTA
AACATATGGCTAGCAACTGGTTCACCAGGAGTACGCAAGAAAGGCAAAAGCACTACGAATTATTG
ATTTAGGAATGGGAATGGGCTAGAACCCTGGGTTCTTCCTTATATAATTAATGGTCTTTTCATTC
TAATACTCTATCCGAGAGTTCTCAGTATTTAGCAAAGCTGTTCCTATCTAACGGATAAAAACAGG
ATCAAATGACAAAGACATTGTTTGTGGAGAAAGAGGTGGCTTTTCCCGGATGAAATGAAACATTT
GATTTGTGTAACAGGAGAAAGATTTCCCACTCCTTAGCCATAAAGATATGTGGCCATGAAAAAGG
GAGGGGATTCAGTGGAACAGGATTGGCCGGGCGGTAGAGTCGTGGAAACACTTGTTGATTCCTAT
TTTGGACCCTAGCTCCATGGAACAATATGCTACTGCGGAAACATG
Found at i:261795 original size:31 final size:31
Alignment explanation
Indices: 261760--261821 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
261750 ATTGCTTATT
261760 GTTGAAAGCACTCGTTTGTTCCGGCTCGTGA
1 GTTGAAAGCACTCGTTTGTTCCGGCTCGTGA
261791 GTTGAAAGCACTCGTTTGTTCCGGCTCGTGA
1 GTTGAAAGCACTCGTTTGTTCCGGCTCGTGA
261822 TGTGTCTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.16, C:0.23, G:0.29, T:0.32
Consensus pattern (31 bp):
GTTGAAAGCACTCGTTTGTTCCGGCTCGTGA
Left flanking sequence: Indices 261260 -- 261759
TCTGAGATTACCACCGGCCCTGCCCTGAGCTGACTTCTTTGCTAGTAGTGAAGTGCGTTTTCACT
TAGCTGGAAAAGTCCATAATCCGATTTGACCTCGGGAGCCTGTCCACGGATCTGATCAAAGTATG
ATTCCCTAGTGCCAAAAGTCCTAAAGCCTATGGCGCCAAGCATGGGGAGTCCGCGGAGAAGAAAA
ACTCTATTTCGCTATGGGCCAAAACTAGTGTTTTTTCGGATTTCTAGTCTAGTTTAAGTGCAGGG
CTAGAGAGTTCTCTTCCAGTATTCTTAGCTGACTGTCCGCTTGCTTGACTCGAACAAATAGCTTT
TGTTTCCACAAGGCAGATCCCATTCCTCGAATGCAAAGGACAAGAAAGACGGATTCTGGCTGGAA
GGAAGGGTTCTCGTATTGGTTCTTCTGGTGCGCTACTTCCTTGTGCTGTGCCAGATTGGAATTGG
TATCGGAATCCTGGTTGGTAGAAGGAAGCTCGGGTATTGCTTATT
Right flanking sequence: Indices 261822 -- 262321
TGTGTCTGACGCATGCATAGAATCAAGATCTATTGAGACCAGGATGTTTGTTTCTTCCTCGAAAC
AAGAGATACGCTCTGGCTTATTTGCATTCGACCGGAGAACCTCACTTATCAACTGCCCTGGATTG
GATCTACTTACGATTTGAGAAACTGGCTCCAGAACCCCTGTTTTTGATGCAGAATCGGTGGTTCC
TTCTCTTTTTCGTGATTTCATCCATAAATCAATGGAAAGAGCACTTTATTCAGTGAATTGACACG
TTCCTGATGCTTTTACAGTAGCAGCAGTCTCGGTAGCAGAAGTAGATCCGAGTGTAGATACCGGG
ATCATATCACCACTATTGACTATTTCAATTCATTCACATCTGCTCGTATCAATCAAAGTTTCCTA
TCAAGCAATCCCAGCAGCAATCAAGTTGGCACCCACTATATAAGATGCACTATTTCCTGATCTTG
TCCCAAACCCAACTCGGCACTTTTAGACCTGGCCTGGATCCCTCC
Found at i:263265 original size:19 final size:19
Alignment explanation
Indices: 263241--263278 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
263231 TTGTTCGTAA
263241 CATTAGTAGTTACTCACTG
1 CATTAGTAGTTACTCACTG
263260 CATTAGTAGTTACTCACTG
1 CATTAGTAGTTACTCACTG
263279 GGTGGGTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
CATTAGTAGTTACTCACTG
Left flanking sequence: Indices 262741 -- 263240
ACAATATACTCAAATAGAATCGTTTCCATAAAAATCTGCCATCATTTTTTTAGTCATACTTGTCC
CTTAGCGGACTCACTCTTGTCTTGCTTCATCTAAGGAGTGATAAGTGCCAGGAGTCTGCCTCTAG
CATCAATACATGTCCTAGTTACGAACAAAGAAGCGGTGCTGTCTCCTTAGCGTTAGCGGCCTTAT
GCCTATTTCAGTATACGCCCGTGTCAATATGTCTAGACTTACCTATACCCATGCTTCCTTCTTCT
TTGACTAGCTTGCTTCCCCTATCAAATAGAACGGGAATGACTGCGTGCTTGGCCATCGTTAGTAA
GCCCGCGTAGGGTAGGACCATCATCGAGCAAATGTTCCTTCAAAGGCGCGGAGCGTGCTATGGCA
GATTTTCATCCCGCAAGAGGATGCGCCTAACTAAAACGCCGAAAGGCAGTGCAGCCCAATCCGTT
GCTTTGCTTGTTGGGTCCACTTTTTGAAAGTTTCTTTGTTCGTAA
Right flanking sequence: Indices 263279 -- 263778
GGTGGGTGCACCAACGGCTTTCTAGGAATTTGAGTTGCTCAATACGGACGGAAAGATTCTTTCGT
GAAATAAAAGAACGGCAGGTTGATGAGGGAAAGGAAACCAGATCTTTTTTCTATGGTATGGCCTG
GGTGGCCTAAGCGAAATCCCGAGATATGAAGGAGCCGATCAATCTACCCGCCCGAGGTAAGCTTG
CTCCTCACTTGAGTTGAAGCTGCCTCCGCTCCCTGCCGTCATACGGATTGATTTACTTTATCTTG
ACATACGCTACGCATATATTTGCTAGAGATATCAATCGAAATAGGAGCTTTCTGAAAATAGAAAT
CGATATATCCATGGTATTGAATGGACAAGAATTGAATGGGATTGTGGCACCCAGTGATACACTAC
GCCATGTTACGAACAAAGAAATGATCAAGAATTTCATTATGGCATGGCGCTATAGGCCATCGATT
CGGTTATAGGAGTAGACGCGGGCAATGGCAAAGAGGAACATTTGG
Found at i:266008 original size:16 final size:16
Alignment explanation
Indices: 265987--266019 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
265977 CCCGTTAGTT
265987 AGTAGGGACAACTTGA
1 AGTAGGGACAACTTGA
266003 AGTAGGGACAACTTGA
1 AGTAGGGACAACTTGA
266019 A
1 A
266020 TACTCCGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.30, T:0.18
Consensus pattern (16 bp):
AGTAGGGACAACTTGA
Left flanking sequence: Indices 265487 -- 265986
GAAAGCTTATTATTGAGTCTAATACTATCCTTTTGAAATTCTTGGTCCTCAGATCTGATACCATA
ACCAGCATCTACATGCTCATGCTGCAAACTATCACATAGGTCCTATTTCAGGTTCATTTACTTTC
TCAAATAAGTAACTTTGTCTAATGTTCCCCGAACGAGTAGTTAAAACAACCACCCCCTGATCCGA
AAGGAATGGGTGTTCCTGAGGCTTATTCAAAGGGCTTTCTAGTGAGTTAATGGGGAATGAGGGTA
TCACCCATAACCAGTTTGAAGATGCAAAAATTCTGTTCTTGTCAAGGAGGGGGATTAGCTACACA
ACCAAGGAAGGCCTTTTTAGATTATTAATATTCTGACTGCTTTTCACTCTTGTCTAGATCTTGCT
TTTGCTTAGAGGGCAGGCCGCAGGACAAAGCAAGAGCTTGAATGCGAGGGGCGCTGCGAATGTTT
GCTTCGAAGGAGCCTGTGAGCCAGCGATAATTAGACCCGTTAGTT
Right flanking sequence: Indices 266020 -- 266519
TACTCCGCCTGTGTCTAATCATCCACTCGACCAGCCAATGAAACGAATTGAGATGAAAGTGATCG
AAAGTTATCTCCCGTAGAAGGAGCTATGTTTGCGAAGGATCGAAGAGAGCGTTGAGGGCGCTAGC
AACAGCGTGTTTGTTTCAACACAAGAAGTGCCGATCCAAGCTTTAAGAACTCAATCGTCCGTCCG
ACCGAATCACTCGTTTATGGCTCTGATTCCAAGTCAGGGTTTAAAACAGCGGTGACCCAGCTAGT
TGAAAAGTTTTTACTTGGAACACCAGACATGAGAGCCAGCTACAGAGACAGCTAATGATATCAAA
GTTGACGAAACAAGAGAGTTTCATTCAATTCTTTTCAGAGTGTACGCCTATGATCAATAGTTCCT
TATGTAAAGGATCTTTCCCTTCTCATATTCTATTCGAGAGTTCTCAGTATTTAGCAAAGCTGTTC
CTATCTAACGGAGGGCTATTGGATCAAATGAAAAAACATTGTTGA
Found at i:289047 original size:31 final size:33
Alignment explanation
Indices: 289012--289079 Score: 104
Period size: 35 Copynumber: 2.1 Consensus size: 33
289002 TTTCCTTATC
289012 AAAGAGGGG-CCG-GGGGGCTGGAAGAGAAAAG
1 AAAGAGGGGCCCGCGGGGGCTGGAAGAGAAAAG
289043 AAAGAGGGGCCCGCCCGGGGGCTGGAAGAGAAAAG
1 AAAGAGGGGCCCG--CGGGGGCTGGAAGAGAAAAG
289078 AA
1 AA
289080 TCAGAATTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 9 0.27
32 3 0.09
35 21 0.64
ACGTcount: A:0.35, C:0.15, G:0.47, T:0.03
Consensus pattern (33 bp):
AAAGAGGGGCCCGCGGGGGCTGGAAGAGAAAAG
Left flanking sequence: Indices 288512 -- 289011
TGATAGATGAAGACTAAAAATTGCTAAATCAACTGCTCCTCCAGAATGGCTGGTAATACCACTTA
AGGGCGGATAGACTGTCCACCCAGTGCCGCTGCCCACTTCTACTAAGGCTGAGCTTAATAGGAGC
AAGAGACTTGGTGGCAACAACCAGAATGATATATTATTTAATCGTGGAAATGCCATGTCAGGTGC
ACCTATCAGAATCGGAACAAACCAATTACCAAATCCACCTATCATCGCCGGCATAACCATAAAAA
AGATCATTAAAAAAGCATGAGCCGTTATTAAAACATTATAAAGTTGATGATTCCCACCAAGAATT
TGATCGCCGGGTCGGGCTAATTCCATACGAATCAGTACGGAGAAGCATGTGCCCATCACTCCTGC
AATGGCACCGAAGATGAAATAGAGAGTCCCAATATCCTTGTGGTTAGTAGAGAAGAGCCATCGAA
CCATATTTGTCATTTTTTATTTGAGAAATGCAAACTTTCCTTATC
Right flanking sequence: Indices 289080 -- 289579
TCAGAATTACTGAGCTACCCCGCTCTTTTTTTTTCTAATTCCCTTCTAAGATCCTCCGACTTAAA
CAAGTCGAGAGCATGCTCGTGCTCAGCTCTTTCGAGACTTGCCTTGCTCTTGGGGATTTCTTCCC
ATCGGATCCTCTGTTCCACTTCCAGGCACCTCCTTGCGGAGCTTTCCGCCTCAAGGAGATCCCGG
TTGTGGGAAACAGCATCTCTAAAGAAAACAGATCCTCCCTCATTCTCCCGCAGATCTTGATAAGA
CGCTTGGAGAACAGTGAAAGAATCAGTTGCGTGAATATGGTCCAGATAGGAACGAAGCGCTTCAT
CGACCAAGTAGGGCTCGATCGGTAGATAAGGCCCTATTCTTTGATAAAGCGCCACAAATTCCTGA
ATGACATCTTGTCGCATACTAGACAGCTTTTCTTCCATTAGGAAGAGCTTAAGCCGTCCAGGTAT
GTCCTCCAGAGGGGTATTGTGATTAAGCTCGTTCTGAATGAACGT
Found at i:293151 original size:29 final size:29
Alignment explanation
Indices: 293109--293166 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
293099 TCCAATGGCT
293109 TCTTCTTTTTCTACACCACCTGGGAACTG
1 TCTTCTTTTTCTACACCACCTGGGAACTG
*
293138 TCTTCTTTTTCTACACTACCTGGGAACTG
1 TCTTCTTTTTCTACACCACCTGGGAACTG
293167 AAGGGCTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.29, G:0.14, T:0.40
Consensus pattern (29 bp):
TCTTCTTTTTCTACACCACCTGGGAACTG
Left flanking sequence: Indices 292609 -- 293108
CGTTCCTCTTTCTCCGTGTAAAGACGGAGCTCCTATTCTCATATATAATGTATGTGTTCCGAGTA
AAGGTAACACGTATGCCCGTTTTGAACTGGAAAAGGTAGGATTCCCCGTGTTTTTGTCCAAAAAT
TGACACCTCCTCTCTATTATGAAATCCCTCTATCCTGGCGCATCGGTGTATGCTGTAAAAAGGGA
GCTATATGCCACGTGAACCTCCCCATCGCTATCCCATTCCAATTCAGCTCTTTCCTTTCCCTTCC
TGACCTTGAAACTGGCTAACGCCTTTTATGAACTCTTATCCAAAATCTCTCAATCAAAGTATGTT
CCTTTTCAAACCTTCTTCTAGCTCTAGCTTTTCCAAATCCCTATCGTCCGGTCACAGCTCGTGCA
TCTTCATGGATATCTACTACCATGAAAAGTGGATCGTTTGAGGGAGGGTTCGCTGTGATTGTTTT
CAAGTGATCTGCCACCGGTTTTCCTGAGAAGGTAGTCCAATGGCT
Right flanking sequence: Indices 293167 -- 293666
AAGGGCTACTCGGGAGGCTTAAGGCAAGGTCAACCCAATCCTTACCACTTTGTCTTGATCATACT
TCCGCTTTCTACCTTCTTGTTTGCAAACTCGTAGCTTCTTCAACACTCAGCCAAAAACAACCATA
TTGAACAAGAATCTCTTCTTCAAAGCGGAATCTGAAATCAATGAGTCCTGATCTACACCCTTAGA
CGTCGATGCACTTACTCCTTACTCTATTTGGACTTTATGGCTAATGACTTACTTGAAAGATTCGT
GCAGGTACATATACAACTGACTATACTACTAATAATAATAGTGACTCTGGTTCAACTTCTTACTT
TTCTTGATCGTACTTGTACTAATTTATAGTTGATTGAATAAGGAAGGCTGACACGCTTCTCGGTT
GTGGAGTCAGTTCTCGGTGGTGGTGCCTTCTTCTTTTTCTTAGAATAGAGACACATACATATTGA
CTTGTTGACTTGATTTGAGAATATACTTCATTTACTTTCTTTCAT
Found at i:309158 original size:18 final size:18
Alignment explanation
Indices: 309128--309167 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
309118 AATTGATTCT
309128 GGAC-CCCCACCTGCTCA
1 GGACGCCCCACCTGCTCA
*
309145 GGACGCCCCGCCTGCTCA
1 GGACGCCCCACCTGCTCA
309163 GGACG
1 GGACG
309168 ATCCCATTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.15, C:0.47, G:0.28, T:0.10
Consensus pattern (18 bp):
GGACGCCCCACCTGCTCA
Left flanking sequence: Indices 308628 -- 309127
GAAAAAACTCTATCTCGCCTGTGGCCAAAAGTAGTGAAAATGGTATTTAGCTTAGTCAATATACA
ACACAACTGCTGATTCTTCGCGAGATGAAAACCCTTTGTCCTCCGTCTGCAGGGGCAATTCCTGA
GAAAAGTGCTACTAGCCCTTGTTTTGGTCATGTCCACAGGCCTTTCCATTCGTCTTTATTCGTCT
TTCTTCCGGCAATCTATGCATAATTCTACTTCTTGAACCACCGAATCCGCTTTTGAAAATGGATA
ACTAGCTCCATTCTGCGTCAAGTACTAAGGATGGGCCCAAAGCACACTTTTGAAAGGCATCGGTC
ACCTTAAAAACCCCAAAAGTAGGAAGTCTAGCGTGCTTCTTTAGTGCTGCTCTTCGATCAGATGC
TTTCTCATTGAACGAGGCATATTAAAGTGAAAGAAGTTCCAGGTCGAGTCCCGAGAAGGTGATAG
TTGATTTTGATCATGAAGTTGGCACTGGACTTTGGAATTGATTCT
Right flanking sequence: Indices 309168 -- 309667
ATCCCATTACGGATTTTCTGGAGGGGGACACGCTTGACCCAGCGCAAAAACGGGAATTCAGAAAT
ATTCTGAATTTCTTGAAGACCAAAAGCAGAACGAACCTTCAAAATGAGCGAATCGTAATAAAAAG
ATGTTGGGGGGGCGAGGGTAGTAGTTACGAATCCAGGGCAATCAACCACTATCTAAAAACCCAGG
TTGGACAACTGCGTGCTGGGGGATTAGCAGGGGATTTTGTCGTAAAGGAATTACGGAAATGGAAA
AGGGACTTCAAAGCTCAGAAGAGACGGTCCCACTTCTATCAGGGCCTTCTCGGGGTCTTGAGCAA
TGTTAATTTGCATTGATTGCAAACAGGGTGCGGGATTCTCTGACGCAAACAAAGAAATGGTCCCG
GAGAAAGGAATCAGTCTCTTCAGTCCGGCGCATGCCTCAAATTCATTTTTCCTTTGAATTACTCA
TTTTTTTGAATTTCGCACCGGAAACTTTTCTAGGAGAAGTTCGAA
Found at i:380876 original size:21 final size:21
Alignment explanation
Indices: 380852--380894 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
380842 TACCTAAAGC
*
380852 AAATGGTTTCTATAGATTGAG
1 AAATGGTTTCTATAGAATGAG
380873 AAATGGTTTCTATAGAATGAG
1 AAATGGTTTCTATAGAATGAG
380894 A
1 A
380895 TATAGTCGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (21 bp):
AAATGGTTTCTATAGAATGAG
Left flanking sequence: Indices 380352 -- 380851
CGTCCTTCTCTCTTTCTTCCCAAGAACATCGGGGGTCTGTTCTCTGAACGAGTCAGCACCAGCCC
CGTTACCAATACGGGGATCTCGGCCATGAGAACTTGTAGAACTTGTCTCTTGAATTGCATCCCCC
CCTAGGCCGACCAGCTAAGTAGGACCCACTTAGCAAAACAGGTCTATAGGGCGCTAGGGAAGGGG
TATAGAATGGTACTTGAATCTATCTATAGACATAGGATCCCCCAGCCACTGGAATCCATTGGTTT
CTGTCTCAATTCGTCATTTGAACTGAAACTAACCACGAAGGGAAAAGAAAAGAAGGATTCTAGTT
TGCCACTACTTGGACTCAACTTGGACTTTCGGAGGAGCAAACCATTTCCATTAATATATGACTCA
GTCATAGCCAAGAGATCATCATTCTAATAACAAGGATCTAGTTTATATATCTCGAATTGGGTTCC
ATAAGATGCCAAAATAGTGGAAGTACCATCACGTCTACCTAAAGC
Right flanking sequence: Indices 380895 -- 381394
TATAGTCGAATGTACCTTTAATACTTCACGTGCATTCTTCGCTTATAAATTTAGCCAAGATCCAA
ACATCTCAATCTCTTCATACGTTCTTCCTGTTGAACTCTTCTTTTCGCTCAACAAATGCAAGTTC
GTCAGGGTTTGGTTACTAGTTTTCTTGGAAGGGTTTTCTCCCTTGATCTTTTCCCTTGTTTTATG
ATTGGAATGAAAGTAGGATTGTTTATCCAATCCAAACTATTTATTGAGGGAAAGTAAGATCAATA
GTTGGCCCTATTGTCTGTGCTCTGTTCTGTTAAGGATTTCTGTATTGGAAACATAGGCATCCTGC
TATTCCCTGCTCTAGTTTCAGTTCAGTCATAAACCTATTGCCCGGGTCCTTTGATACTTGATTTC
CTGGGTCAACGGTACCTAGATTCCCCTTTGGCTTGATCTTACCTTGGATTTATGATTGGAATACA
GATTGGATAAACAAGAGGAACTTGGAAAAGAGGGTTGGCCAAAGC
Found at i:413777 original size:59 final size:57
Alignment explanation
Indices: 413645--413827 Score: 348
Period size: 57 Copynumber: 3.2 Consensus size: 57
413635 AATGGCTAAA
413645 GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTGAAGACCTAAGTATGACG
1 GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTGAAGACCTAAGTATGACG
413702 GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTGAAAAGACCTAAGTATGACG
1 GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTG--AAGACCTAAGTATGACG
413761 GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTGAAGACCTAAGTATGACG
1 GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTGAAGACCTAAGTATGACG
413818 GAGGAGGAAA
1 GAGGAGGAAA
413828 GGAAAAAATT
Statistics
Matches: 124, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
57 67 0.54
59 57 0.46
ACGTcount: A:0.37, C:0.15, G:0.34, T:0.15
Consensus pattern (57 bp):
GAGGAGGAAAACAGATACAAGCCTCCGGTGGAAGGTTGTGAAGACCTAAGTATGACG
Left flanking sequence: Indices 413145 -- 413644
TGCGTAGTTCAAGTTTTCGACCGATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATTGCTTA
CTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTTACTATTGGACAAATTCCTTC
TGTCTTTTTCTTCTTGTTCTTTGCCATAACGCCCATTCCGGGACGAGTTGGAAGAGGAATTCCAA
AATATTACACGGATGAGACTCATCGCACCGGATCCTTTTCTCCTTTTGGCCATAGCCATAGAAGA
AGCTGCTCCTCCGAAGCGGAGGGAGGGGAATCTATTGATTCCTATAACCCTGCTTATATAGCGTT
TTTAAGACAACATTTAGGGTTTTTCCCGGGTTTGGTACCAAATCTGGATAAACTCCTTTCGGTTC
TTAAACCGGAGGAAATTCTCTTTCTGGCTTTCCGCTTCCCGCGGGATGCGAACATGTTTAAATTG
CCCCTAAAGAAGATCAAAGATATGATTAAAGAAGTAATGGCTAAA
Right flanking sequence: Indices 413828 -- 414327
GGAAAAAATTGCTGGAAGCATTTTCTTTCCTATGGGATAAAAAACAATGAATTGGAACTATTGAG
TGGTGTAGGTATCCATCTTAGCAAATAGAGATACCGAGGCCCACCAACCTACTACTTGTTGGTTT
GGTGGGGAAAGAGGAGTGGGTATGAGGGCTTCTTTCACTTTTTAAGGCTAGTTTACATCATTCCA
CATGATGATTTGCTAATTGTTTTATGATCCTTGACTAGCTATATAGACCCTAGGAACTTGCATGT
GCTATTACTGCTGTATAAAGGAAAGGTGGCTCACGTTACCACTCTCCCCTATTCCTACAGGAAGG
AAGAGTCCATCAAATGCAAGTCGCTACCAGTTTCCTATTTTGGATGAATACCATCGCACCATTTG
ACCTCGAAGTAACGAGTACTCAAGGAATCCTCTGGAATTCCAGTCATGATGATCAGGTACCCGGA
GTACATCACCCTCATCAGGAAGAAAAGAGAGAGAAGTGGAGTAAA
Found at i:420642 original size:15 final size:15
Alignment explanation
Indices: 420622--420651 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
420612 AGTGGGCCCC
420622 CCGTCTATCTATTAG
1 CCGTCTATCTATTAG
420637 CCGTCTATCTATTAG
1 CCGTCTATCTATTAG
420652 ACCTATCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (15 bp):
CCGTCTATCTATTAG
Left flanking sequence: Indices 420122 -- 420621
GATAGGGCTTCTGTTGGTCTCTCTTTTTCACTATCACTGAAATCCACCTCCTCTTTAGAAAAATG
AGAGCTGCTCTTTGGTAGTTTCGGTAGTCCCAAGTAAGCTATCGACTCTGGTGTCCAATCAGTTC
TGAAGTCTGGCTTGTCATTGGAAAAGGTAGCAAAGAATATCGTATTAAGATGTCGGTAGTACAAA
GCAAGCTACTTCGTCTGTTCACTCAATTGGCTCCCTAATCTTGCCTTTCAAAGAAAGGATAATGC
GTAGGAGTGAAGCAGTTGACTACTGTGTCTTGAGGAGTTCTGTACCGTACCCTTTGTGTCCGATC
GAGTTCTGCGGTCTACGGCTGTATCCGACCAATTATCCAAGGCGCGGTCCACCTCTTTCTATGCT
TCAATTTAGTGACGCAAGTAATGGTGGTGTTTGTTGTACTATAGGTACTGGGTTCGTTCTCTCGT
TGTCAGTATGTATTGAACTACCGCAATACAGGACTAGTGGGCCCC
Right flanking sequence: Indices 420652 -- 421151
ACCTATCTAGAAGTAGAAGTTCGTTGCATTCCCGGAGATGTAGAATCGAGTGTTTAGCTTACCGG
GCATTGTGCTAAGTTTGCATCCGAATCGAAATCTGGCGCGACTACTCAAACACGAAAGCTAGGGA
AGGGAATAGAAGGGCGGGTAGATCAATGTGATGATAGCACCACGCCAGGCACCGAAGACGAAAGC
GAAACATCGTCGGTAACACTATACGTTGTAGTCTCGCATTATCCACTGGATCCGCAGCTAACCAT
ATATAATGCTCAATGCTATGCAAAAGCAATAAAGGGGAGATTGTCTTCTAACTAACTATATAAGT
AATTGATATAACTAGATGATTCTCGTTCAAAAGATTCTTCCCATTATCATTATATAGAGAGGCGG
AGGCGCGTAGCAATAAAAAAGCTTGCTTGTTGGGCTGATGAGGCTCGAGAAAGACTGTGAAGTGA
AGATGCGCCATTACCGAAACCATTTCTTTGCTTTGGGCGAAGTTC
Found at i:426041 original size:16 final size:16
Alignment explanation
Indices: 426020--426053 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
426010 AAAAAGCTTA
426020 AATAGACACAATTCGT
1 AATAGACACAATTCGT
*
426036 AATAGATACAATTCGT
1 AATAGACACAATTCGT
426052 AA
1 AA
426054 GGAAGAAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (16 bp):
AATAGACACAATTCGT
Left flanking sequence: Indices 425520 -- 426019
GGTGGATTGGAGTTCGTCTCCGCCAATTAGAGATACGGTGCTGACCCAAGCTGAGTGAGTGAAGG
CTCCGGCTTGACCTACTAGCTGTTTGCTATCAATAAATAACTAGCTGACAATATGCTATGCTTAC
TCTCCGAGCACTAAAGCTATCGAGAAGTGATGCAACAAAGGTTGTTGAAGGTAAAAACCGTCAAA
CAGAGAAATCTTAATCGTCAGAACAACGCTGAACCTAACTTGTACAAGAGTTGGTAAGAAAGTGC
AAACGTTGAGTAAGAAATCGCCATAGGGCGGCACAAACAGAAAGAAAGGCTTCTGCCAATCGGAA
TAGGAATGCGAAATCCCAGTAAAAGGGTGTTCAGTCGAAGATAGGAGGATTCCTTTGATCCATAC
CGTCATCTGACGGACTTCCTGCTGACTTCGTCAATTGCTCTTTATCGCTTAATAGAAGGGAAATT
TCATGAGATAGATGAAAAAATGAATATCAATCGAGAAAAAGCTTA
Right flanking sequence: Indices 426054 -- 426553
GGAAGAAGTGATCAAAAGTACGAGGTCGGCATAGGAGATATGATGTGTCGGAGGCAGAAGGCACG
GAGAAGTCAAGATCTTCCAAGATAAACCCATTCCGATGCCTATAAAATCAGGTGCACCGCGTCTA
TACTACAAAAGTGTGATAGGTTTCTTCGTATTTCTTCCGCCGACATCGCTTTCTTATTCCTAACA
CAATTGTTTAGCTAAGTTTGCTAACGAATCAGGGAGAATCAACAACGAACACCGCATTTTGAAAA
GGAGACGTGATTTATTCCTACCGTCCTGAACACGTCTAGAAACAGCAACCTCGTACATAATACCA
TTTCGCATTACAGTATCCACTTTCAAGTCGGGGTGAAACTTACTAAGATGTTGGGTCATCAGAAT
ACCATCGAATCGACTCATGTTATGCCTGGAATGGAATAAAAACATGAGTCAAATGCATCGTAGTC
CCTCAATCGAACAGTCAACTAGTTCATATCTAACCTTATGTATTC
Found at i:432043 original size:13 final size:13
Alignment explanation
Indices: 432025--432049 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
432015 GGACCGCCCA
432025 CATTCATTCATTT
1 CATTCATTCATTT
432038 CATTCATTCATT
1 CATTCATTCATT
432050 GTTCTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (13 bp):
CATTCATTCATTT
Left flanking sequence: Indices 431525 -- 432024
GCGGTTCGACTCTTGCTTGAGTTTGATAGGTGAGATATTTATTTAAGGAGGTACGTTCTATTTCT
TTTCCTTTGTTTTATTCTGGCTGGATGGTGTACTAGCTTGGTTTGGCTGGCACTATTGGGTATCG
TGGGCGTCTCATCCCTTGGAGGTTAGGGTATTGAAAACACATTGAATAGAGATCCGAATCGAATA
CAAAAGATCGGAAATGTCCGTTCGTTCTTTTCCACCTGATGACGAAGTGCCCGGTCTCAAATGTA
AGTGCTTTCTGGCTAATATAGATAGCCGCCTAAAAAGCACACAGGAAAATCAAAGAAATGGATAT
TTAGAGCCACTTTAGAGCTCTGGCACCACTCCGTTCGACCTATCAGCTCCCCAATGCTTAACCGG
ACGGACTGATTCTAGAGTTCTGTTTTAGTAGAAACTTGATTGATTCGTTCCTGTATAAACAGCTA
AAGGAAAGGCTTCTGATCACACACTTGTCGTCTGGGGACCGCCCA
Right flanking sequence: Indices 432050 -- 432549
GTTCTGTTGTGGATTCGAACCACTAGCACAAATTTGATTTCGAGTCAAAGGGCGCTTTTTTAGGA
TTTCCAGTCCTTTTACCTTTCAGAACCTCTCTTTCTAAGTTATGTTTTTTTTATTGTTGTCAATT
TCCATTCGTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTT
CTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCC
ATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAGC
CCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAA
CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACC
CTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAG
Found at i:435894 original size:70 final size:70
Alignment explanation
Indices: 435781--435920 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
435771 AAGCAACGGA
435781 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
435846 ATTTT
66 ATTTT
435851 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
435916 ATTTT
66 ATTTT
435921 CTGAAGTGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (70 bp):
TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
ATTTT
Left flanking sequence: Indices 435281 -- 435780
TTGTACAACTCCGTAGGGCGCGCTACGGCAACTTTTCTAACTACGCTTGCTGCTTGCTGGTTTTT
CCATCATCCAATCCACAACAAATCGAATGAAACCGCTTCGGATTTCTTTTGATGAAAACCCTTGT
TCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTTCCTTCCTTTAGCTACTCAGATG
TTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTT
CCCGATCGGAGATCCATGGATCACAGAAAAATCTCTCCCCATGGCCTTTCGCCTCTGAAAGCGTC
CTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATGATTTTCGATAGCGTCGAACATGAGCGGA
CACCCACACAATCTCGATTTGACACAGCAACACTTTCCACCTCTCTTCCTTCCCTTGGATCAGAT
AGGAAATCCTCACTTTTCCAAGACAGAAGAGAAGCAAGCAACGGA
Right flanking sequence: Indices 435921 -- 436420
CTGAAGTGATCTGTCCAACTAAGTAGAAAAGGACACTAGAGTGTGGCTACACGTGGTATAGGGCT
GCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAGTGGAACTCTCACATACATGTTCCTTAAGTTTTT
AGCTCGCTAAATGATACAGTCCTCGCTGATGGATCGGCAAGTACTCCACGGTCAGCGGCTATCAG
CTAACGTTATGGGCCGTTAGTGGTGGTTCATTGCCTATAGTGTTGTAATCCGGAATCCAAGTTTT
GTGATAACCGTGTTGTTTACTTTCAGTGTTGTTTATTGTTCACAGCTGGATTGAGCTCAGTTGAG
AGTGTCATGCTCTGTCAATATCTGTTGCAGGAGTTGTCATTCTCTGTTACTAGAGTTGTCAATCT
CAGATGCAGGAGTTGTCAGTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCA
GGTTGGTAACAGCTTGTATCTCGATAGGACTGAATGTAGCCAGGA
Found at i:436291 original size:22 final size:22
Alignment explanation
Indices: 436258--436328 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
436248 TGTCATGCTC
*
436258 TGTCAATATCTGTTGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
* *
436280 TGTCATTCTCTGTTACTA-GAGT
1 TGTCAATCTCTGTTGC-AGGAGT
* *
436302 TGTCAATCTCAGATGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
436324 TGTCA
1 TGTCA
436329 GTTGCAGCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (22 bp):
TGTCAATCTCTGTTGCAGGAGT
Left flanking sequence: Indices 435758 -- 436257
ACAGAAGAGAAGCAAGCAACGGATTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCG
TTTTCTTGCTTGATTTTTATACGATTTTTTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGC
ATCCGTTTTCTTGCTTGATTTTTATACGATTTTCTGAAGTGATCTGTCCAACTAAGTAGAAAAGG
ACACTAGAGTGTGGCTACACGTGGTATAGGGCTGCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAG
TGGAACTCTCACATACATGTTCCTTAAGTTTTTAGCTCGCTAAATGATACAGTCCTCGCTGATGG
ATCGGCAAGTACTCCACGGTCAGCGGCTATCAGCTAACGTTATGGGCCGTTAGTGGTGGTTCATT
GCCTATAGTGTTGTAATCCGGAATCCAAGTTTTGTGATAACCGTGTTGTTTACTTTCAGTGTTGT
TTATTGTTCACAGCTGGATTGAGCTCAGTTGAGAGTGTCATGCTC
Right flanking sequence: Indices 436329 -- 436828
GTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCAGGTTGGTAACAGCTTGTA
TCTCGATAGGACTGAATGTAGCCAGGAGTTGTCTTAGGTTAGTCTAATGTGCCAAAACGTTAGTC
AAACCACCTAGGTTGTGTTTGTTCTGGAGAGTTCAGCTAGTCCGAGTGATCTGGGTTATCCTACG
TTTTATCCCTGTTTCGATCTTTTTTTCGACTATAGGGGTTTTGTAGCAGCCCAGCAGCATCCGTG
TGACAGAGAGTCATATTAAGGATATAATAATGCTTTCCCCCCCTTGCAGAAAAAGTAGGAAAATG
GACTGAAATTGTTGGATAAGTGGATTTGCAGTATCTCAACAATCAGAACAGCGAATATTCCATCA
TCCAAACTAAGCTTCCTCAGATCCTAACCCATTGGTCATTATCGAGCCTCGTGACTCCGGCTGTG
TTGATATCTTCGTATTACCTGTTATCATTCTATCTATCTGGTTAT
Found at i:445437 original size:17 final size:17
Alignment explanation
Indices: 445415--445449 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
445405 GTGGATTGAA
445415 AATCATCAGGTATAGGT
1 AATCATCAGGTATAGGT
445432 AATCATCAGGTATAGGT
1 AATCATCAGGTATAGGT
445449 A
1 A
445450 TAGGTAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (17 bp):
AATCATCAGGTATAGGT
Left flanking sequence: Indices 444915 -- 445414
GAACGAGATATTGACTTTTTTTACATCTGTAACTACATTCTCACATTTCTTTTTTGATCTCATGA
CTTTTTATGCGATCGGAAAACGAATGAGATCAGAAAGGCCATCATTGGGGCAAACAATGCAATAG
CTTCGGTGAGAGCAAAGCCCAAAATGGCATAACCAAATGATTGTTTAGCCAATGATGGATTTCGC
GCCACGGAATGAATCAAAGAACTGAGGACGTTTCCAATACCGACAGCAGCTCCGGCTAAAGCAAT
TGTAGCAGCTCCGGCACCTATTGATTTAGCACCTTCTAACATCTCGAGTCGAGAAAACACTTTTC
TTGTCACGTTTTTCCTTCGCTGTTCTTTCTTGGATTTCTTGTTGATGATTCGAAGTACTTGGGCC
TGCACCTCCATAATTTTCAAATATTGGGTTATGCGGACCACTAATTTGATACATATTATCACAAT
TTGCAAGGCTTGTCACATATTCAAGAAAATGAGCTGTGGATTGAA
Right flanking sequence: Indices 445450 -- 445949
TAGGTAGGGGGTCCGTCAACCCTTGTGGGGCTGGGTGGGGTATCCTGAACTACTGGAGCAGCTCC
CCCTTGTGGCTGGGGTAGACTCTCAGCAGCTTGGTTTACGCATGGCACGAAAATCTATCTTTCAT
AATTATGTGCAAAAAGTCCAAAATAGCCTATTGGGGTTCAGTTGGCGAGAAAAGCCTTCTTCCTA
CATCTGCGAGTAAGGGGCAACCTTTTTGATTAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAA
GAAGCATCTGGTTCCATCTTTCTTTCGTTAGTTAAGCCACCTTTTTCTAAGAAGGATTTTTGTAA
TTCTGGATTAATAGTACTTAGAATGGCTTTTTCATATTGAGAAATTCTGTCTAGTGGCATTCGAT
CACAGAAGCCGTTGACAGCAGCATAAATCACAACAATTTGTTTTTCAATTGGAAGTGGTTCATAT
TGTGGTTGTTTGGGCACTTCTGTAAGCCTTGCACCTCTATTGAGT
Found at i:458421 original size:30 final size:30
Alignment explanation
Indices: 458385--458556 Score: 245
Period size: 30 Copynumber: 5.7 Consensus size: 30
458375 TTCGAGTTTT
*
458385 CAATACGGAGCCTGAAATAGTTTCTAAATA
1 CAATACGGAGCCTGAAAGAGTTTCTAAATA
* * * * *
458415 CAATACGGAGCCTTAAATAGTTTTTCAATT
1 CAATACGGAGCCTGAAAGAGTTTCTAAATA
*
458445 CAATACGGAGCCAGAAAGAGTTTCTAAATA
1 CAATACGGAGCCTGAAAGAGTTTCTAAATA
458475 CAATACGGAGCCTGAAAGAGTTTCTAAATA
1 CAATACGGAGCCTGAAAGAGTTTCTAAATA
* * *
458505 CAATACGGAGCCTGAAAGAGTTTTTCAATT
1 CAATACGGAGCCTGAAAGAGTTTCTAAATA
*
458535 CAATACGGAGCCTGAAATAGTT
1 CAATACGGAGCCTGAAAGAGTT
458557 CAATTAAAGA
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 127 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (30 bp):
CAATACGGAGCCTGAAAGAGTTTCTAAATA
Left flanking sequence: Indices 457885 -- 458384
GTCCCTTCCCCTAGAGGGGTTTCCTATATGGATTCGTTCCCCTGAGCATCTTCCATGAATTGACG
TATATGAGCGTAGTTATCAGGTACGCCGGGAGCTGGATTCTATCCCCGGGGATAGTGATTGATGG
CATAGAGTTTTGATAGAAAACTCGTATCAAAATCATACCAAAAGAAAGTCTCGATTCGAGGAACG
GAATACAGGTCCATGATAGAACACAGACCGGTAAGAGAAAGGAAAGTAAGCATAGTCTTCATTGA
ACCGGAAGAACAATTAGATTTTCCGTCAACAAAGTAACGCTGTGCAAACTCATCTGATCCCTGTT
TGGGACTTCTTCTTCATGTCACGAGCCGGAATCGAACCGGCGCTTTCCAGATGCATGGTCCGGAT
AGATACCTATCAGATCGCGACTTTGATTTCTCAGTTCAAGAGGAGACCTCCCTACATCTGCGGGC
TGGCGGTCCTGCCGGCCAGCCGACACAAAATCCAATTCGAGTTTT
Right flanking sequence: Indices 458557 -- 459056
CAATTAAAGATCAAATGGCGCAAAAGAGTTTGCTTAGAAGGGAAAATACCAAAACCGCATAGAAA
AAGACATCAAAAAATGAACATACATAGGTACCATAGGCAAAAGCGGCTGGCTGCTAAAATAATTA
AAATGCATTTGATAAAACATTTGCATTTGATAAAACATTTGCATTTGGTAAAATATCTGCATTTG
AGAGAAGTGAAAGTAATCCAGATTTGCATTTGCGGCGACAAAATCCGGAATCTGAGAATAAGGGT
TTGGATTAGGGGGAGGAGGGGAATTTATTGATTCCTCCACCTCCATGTAGTTCGAACTCACACTT
TCTACGCTAAAAGCCGGCCCATTGACCGAGTTTGGGTATGACGACGAAGGGTTAAATTCCACAAT
CATTCCGTCCATGGAATCCGGGATAAAAAAAGGATCCATCGTGACCCCCCCATCTTTTTAAGCTC
TGCTCCCAAACAAAAGAGAAAGGAAAGGAGACTGATCTTGACGTC
Found at i:458534 original size:90 final size:90
Alignment explanation
Indices: 458385--458556 Score: 299
Period size: 90 Copynumber: 1.9 Consensus size: 90
458375 TTCGAGTTTT
* * *
458385 CAATACGGAGCCTGAAATAGTTTCTAAATACAATACGGAGCCTTAAATAGTTTTTCAATTCAATA
1 CAATACGGAGCCTGAAAGAGTTTCTAAATACAATACGGAGCCTGAAAGAGTTTTTCAATTCAATA
458450 CGGAGCCAGAAAGAGTTTCTAAATA
66 CGGAGCCAGAAAGAGTTTCTAAATA
458475 CAATACGGAGCCTGAAAGAGTTTCTAAATACAATACGGAGCCTGAAAGAGTTTTTCAATTCAATA
1 CAATACGGAGCCTGAAAGAGTTTCTAAATACAATACGGAGCCTGAAAGAGTTTTTCAATTCAATA
* *
458540 CGGAGCCTGAAATAGTT
66 CGGAGCCAGAAAGAGTT
458557 CAATTAAAGA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 77 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (90 bp):
CAATACGGAGCCTGAAAGAGTTTCTAAATACAATACGGAGCCTGAAAGAGTTTTTCAATTCAATA
CGGAGCCAGAAAGAGTTTCTAAATA
Left flanking sequence: Indices 457885 -- 458384
GTCCCTTCCCCTAGAGGGGTTTCCTATATGGATTCGTTCCCCTGAGCATCTTCCATGAATTGACG
TATATGAGCGTAGTTATCAGGTACGCCGGGAGCTGGATTCTATCCCCGGGGATAGTGATTGATGG
CATAGAGTTTTGATAGAAAACTCGTATCAAAATCATACCAAAAGAAAGTCTCGATTCGAGGAACG
GAATACAGGTCCATGATAGAACACAGACCGGTAAGAGAAAGGAAAGTAAGCATAGTCTTCATTGA
ACCGGAAGAACAATTAGATTTTCCGTCAACAAAGTAACGCTGTGCAAACTCATCTGATCCCTGTT
TGGGACTTCTTCTTCATGTCACGAGCCGGAATCGAACCGGCGCTTTCCAGATGCATGGTCCGGAT
AGATACCTATCAGATCGCGACTTTGATTTCTCAGTTCAAGAGGAGACCTCCCTACATCTGCGGGC
TGGCGGTCCTGCCGGCCAGCCGACACAAAATCCAATTCGAGTTTT
Right flanking sequence: Indices 458557 -- 459056
CAATTAAAGATCAAATGGCGCAAAAGAGTTTGCTTAGAAGGGAAAATACCAAAACCGCATAGAAA
AAGACATCAAAAAATGAACATACATAGGTACCATAGGCAAAAGCGGCTGGCTGCTAAAATAATTA
AAATGCATTTGATAAAACATTTGCATTTGATAAAACATTTGCATTTGGTAAAATATCTGCATTTG
AGAGAAGTGAAAGTAATCCAGATTTGCATTTGCGGCGACAAAATCCGGAATCTGAGAATAAGGGT
TTGGATTAGGGGGAGGAGGGGAATTTATTGATTCCTCCACCTCCATGTAGTTCGAACTCACACTT
TCTACGCTAAAAGCCGGCCCATTGACCGAGTTTGGGTATGACGACGAAGGGTTAAATTCCACAAT
CATTCCGTCCATGGAATCCGGGATAAAAAAAGGATCCATCGTGACCCCCCCATCTTTTTAAGCTC
TGCTCCCAAACAAAAGAGAAAGGAAAGGAGACTGATCTTGACGTC
Found at i:458711 original size:18 final size:18
Alignment explanation
Indices: 458690--458752 Score: 99
Period size: 18 Copynumber: 3.5 Consensus size: 18
458680 ATAATTAAAA
458690 TGCATTTGATAAAACATT
1 TGCATTTGATAAAACATT
458708 TGCATTTGATAAAACATT
1 TGCATTTGATAAAACATT
* * *
458726 TGCATTTGGTAAAATATC
1 TGCATTTGATAAAACATT
458744 TGCATTTGA
1 TGCATTTGA
458753 GAGAAGTGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (18 bp):
TGCATTTGATAAAACATT
Left flanking sequence: Indices 458190 -- 458689
AAACTCATCTGATCCCTGTTTGGGACTTCTTCTTCATGTCACGAGCCGGAATCGAACCGGCGCTT
TCCAGATGCATGGTCCGGATAGATACCTATCAGATCGCGACTTTGATTTCTCAGTTCAAGAGGAG
ACCTCCCTACATCTGCGGGCTGGCGGTCCTGCCGGCCAGCCGACACAAAATCCAATTCGAGTTTT
CAATACGGAGCCTGAAATAGTTTCTAAATACAATACGGAGCCTTAAATAGTTTTTCAATTCAATA
CGGAGCCAGAAAGAGTTTCTAAATACAATACGGAGCCTGAAAGAGTTTCTAAATACAATACGGAG
CCTGAAAGAGTTTTTCAATTCAATACGGAGCCTGAAATAGTTCAATTAAAGATCAAATGGCGCAA
AAGAGTTTGCTTAGAAGGGAAAATACCAAAACCGCATAGAAAAAGACATCAAAAAATGAACATAC
ATAGGTACCATAGGCAAAAGCGGCTGGCTGCTAAAATAATTAAAA
Right flanking sequence: Indices 458753 -- 459252
GAGAAGTGAAAGTAATCCAGATTTGCATTTGCGGCGACAAAATCCGGAATCTGAGAATAAGGGTT
TGGATTAGGGGGAGGAGGGGAATTTATTGATTCCTCCACCTCCATGTAGTTCGAACTCACACTTT
CTACGCTAAAAGCCGGCCCATTGACCGAGTTTGGGTATGACGACGAAGGGTTAAATTCCACAATC
ATTCCGTCCATGGAATCCGGGATAAAAAAAGGATCCATCGTGACCCCCCCATCTTTTTAAGCTCT
GCTCCCAAACAAAAGAGAAAGGAAAGGAGACTGATCTTGACGTCGGTGTCGGTTTTTCCAACGAA
ACGAAGAAGTTTTGGATTGAGATTTCACATAAGCATTGCACAATGATCCGCATTAGGCGGGGAGC
AGCAATGATACCGCCGGCCAGGAATAAGTACCTATCCCTCTTATACTTAAGAAAAGAGAAGAGAA
GCAGGTGTTGAGAAATGAGAAGTGGGCTATATCCCCGGGGACTTT
Done.