123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_018041
Parameters: 2 7 7 80 10 50 500
Length:  525671

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9641--9681	20	2.0	20	100	0	82	24	12	19	43	1.85
31116--31183	18	3.8	18	98	0	127	38	22	16	23	1.93
65710--65739	16	1.9	15	93	6	51	43	13	30	13	1.82
94432--94509	40	1.9	42	81	5	97	17	20	21	39	1.92
104253--104302	24	2.1	24	96	0	91	40	18	20	22	1.92
120892--120935	14	3.1	14	90	6	63	72	6	2	18	1.17
163482--163508	13	2.1	13	100	0	54	14	22	0	62	1.31
180754--180796	21	2.0	21	100	0	86	32	37	18	11	1.87
222539--222579	20	2.0	20	100	0	82	43	19	12	24	1.85
234667--234691	12	2.1	12	100	0	50	44	8	32	16	1.76
241974--242009	18	1.9	19	88	5	56	36	33	2	27	1.72
270916--271069	69	2.2	69	84	2	202	25	18	18	38	1.93
270941--271089	69	2.2	69	86	4	203	24	21	15	38	1.92
327462--327529	34	2.0	34	94	0	118	20	32	17	29	1.96
331088--331149	31	2.0	31	90	0	97	11	22	16	50	1.76
332369--332410	21	2.0	21	95	0	75	9	40	19	30	1.83
334170--334225	30	2.0	28	86	13	80	26	12	44	16	1.83
341742--341805	21	3.0	21	100	0	128	28	29	9	32	1.88
346877--346912	18	2.0	18	100	0	72	38	0	44	16	1.48
351394--351431	18	2.1	18	95	0	67	34	18	18	28	1.95
376089--376127	20	2.0	20	84	0	51	0	28	10	61	1.28
406948--406991	20	2.2	20	100	0	88	31	13	22	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472313--472338	13	2.0	13	100	0	52	38	0	15	46	1.46
479695--479737	21	2.0	21	90	0	68	39	20	23	16	1.92
481207--481232	12	2.2	12	100	0	52	26	34	15	23	1.94

Tables:   1

The End!