Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_013444
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 168526
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Found at i:13691 original size:27 final size:27
Alignment explanation
Indices: 13609--13699 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
13599 GAAAAACGAT
* *
13609 TATATAAACGAAACTTCAGTTTCTGCA
1 TATATATACGAAACTTCAGTTTCTGTA
* * ** * * *
13636 TATGTATATGCTATTTGAAGTTATATGTA
1 TATATATACGAAACTT-CAGTT-TCTGTA
13665 TATATATACGAAACTTCAGTTTCTGTA
1 TATATATACGAAACTTCAGTTTCTGTA
*
13692 TATGTATA
1 TATATATA
13700 TGCTATTTCC
Statistics
Matches: 45, Mismatches: 17, Indels: 4
0.68 0.26 0.06
Matches are distributed among these distances:
27 22 0.49
28 8 0.18
29 15 0.33
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (27 bp):
TATATATACGAAACTTCAGTTTCTGTA
Left flanking sequence: Indices 13109 -- 13608
GACTCGATATAATTGGCTGCCTCCATCTCGTTCTTGATGGCTTGCCCTTAGTCGAGTCCTCTAAT
ACAACGCTTAAATCCGGTAGACATTCGCGGCTGTGATCGCCGATGTGAGCTGTCACATAACCCCG
ATCTACGAAGTGTTCCACAAATTGCTTCGTCATTAAAACCTCGCTCGAAGGAACCGCAAAGGCTA
TAATTAGGCCTAGAACGTATCAACTGCAAACTGCGCAGACTATCCATGAAGAAATGAAAGGCTCA
GAAAAGTCCAGTACGCGCTGTCGTTCCGCGTACGGTAAGAAAAACATAAAGGTGTACAATACGCG
GCCTAACTCGGGCACTCCGAAGAAATGAGTAACTTTCTAAATTTTGGGGGACATAGGTATAATGA
ACGCGGATTAGCACATAAACGCCTCTGACTGCTGCAACTAGATAGTAACCTCAGCGGCTTCTTTC
CATAAATTCGTTGTCGACGTGTCGACAACGAATGTGAAAAACGAT
Right flanking sequence: Indices 13700 -- 14199
TGCTATTTCCAATTATTTCTCTGTATACGAAACTCCCGTTTCGTGTATTCTATATGATATAACAA
GTCCTCCATGCTATGCGTTATGCCGCACTCCGCGGCACGCCCCGTCTTCTTTTGGGAACCAATAA
CGCGTAAACCATGTAAAACTAAAGCGAATCAATATCCAAAAAACACGAATTCGAACTTCCTCCAA
AATAGTTTTTAATACAAAATTCATTCTATTTCGTCGTGTGTTGAACCTGATCAAACCGAGGAAAA
CGCGAAGCAAAAAAAAATATATATTTTTTCGTTCGTTTCACTCCATTGACCCTTTCTTTTTCAGC
TTTCATTCGCGACGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTCTTTCTTCTCTGGAATT
CACTCTTCTTTTGCGAAGTGGTTAGTAATGTGCCGCATTCTTAGCTCAGTTGGATAGAGCAACAA
CCTTCTAAGTTGAAGGTCACAGGTTCAAATCCTGTAGAATGCGTA
Found at i:19560 original size:10 final size:10
Alignment explanation
Indices: 19547--19584 Score: 67
Period size: 10 Copynumber: 3.7 Consensus size: 10
19537 CCAGGGGATG
19547 GGGGGGGCTT
1 GGGGGGGCTT
19557 GGGGGGGCTT
1 GGGGGGGCTT
19567 GGGGGGGGCTT
1 -GGGGGGGCTT
19578 GGGGGGG
1 GGGGGGG
19585 GTAGGCGGCG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.00, C:0.08, G:0.76, T:0.16
Consensus pattern (10 bp):
GGGGGGGCTT
Left flanking sequence: Indices 19047 -- 19546
ATATGCAGCTGCTAAAGCAGGATAAAAAGCTTGTCTGCCGGCGGGGGTTGGATGAGATCCGTGTT
CGTGGACGAGCATCATCCATGAAGTACGTCCAGACTTAGCTAATCTTCTTCTTCGCGCGAGACTT
GGGAGGAGTCGGTCGGGGATGACGATCTGTTCCGACGCTAACCCCCTATTCTTCAGTGCGAAATG
CTTCCGACCTTCGAGCGGCGATGGAGGCTTTTTCACTCGCCTATCGGCGTCGTATGTTCAAAAGA
CGGCCGGCCTCAGTGCGACTTGAAAGAGAAGTGGCGAGCCGGCTGGTGTTTAACCTCGAGGACTT
TGAAACAACAAAGGCAAAGAAGTCGGACCCACTTTATCGGGCACCCCCGGCCCTCCCTTTGGTCG
AGCACCACTTGCGTAACATATTTATTTTTTTCGTCAACTTTCTTAGCATAACGAAACTGATGCTA
GCAAATAAGAAGTTTACTTCGAGGCCCCGCGGCCCCCAGGGGATG
Right flanking sequence: Indices 19585 -- 20084
GTAGGCGGCGGCCCGGAAGACTAGTAATTGTAGGCCTACGCAGGCCACCCAAATCCCTGTTCCGT
AACGTTCCCGTAGGTGCTTTATGATGCGAAACTGGTACGTACGGTTCGGTGACGTAAAATTAGTT
CTACCTATTATGAATGAATCGTAACAGAACCCGGCTGAGCGATATGCGAGAGGGCCGAAGGCGGC
GCGAAGAGCAGAAACAAAATGAAAAATTTTTTTTGAAGTATCCCCCAACTCCTCCGATAAAACAA
AGGAAGGAGAGTACGGGGCCGAAGGGCTTGAAAATATCTAGAAATTCATATTTCTCGTTTGGGGA
TTAATCAAACGATTTTGAGCCAAATTTCGGGTCCGAAGGACTGAAAAATTAATGGAAAAAAACGA
GGTAAGCGAAATATGCCAACAATGAATCAGCTTGTTCGTAAGGGCAGAGAGTCGAAACGACGCAC
AAAGCGTACTCGCGCTTTGAATAAATGTCCCCAAAAGCAGGGGGT
Found at i:19561 original size:11 final size:11
Alignment explanation
Indices: 19545--19585 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
19535 CCCCAGGGGA
19545 TGGGGGGGGCT
1 TGGGGGGGGCT
19556 T-GGGGGGGCT
1 TGGGGGGGGCT
19566 TGGGGGGGGCT
1 TGGGGGGGGCT
19577 TGGGGGGGG
1 TGGGGGGGG
19586 TAGGCGGCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.34
11 19 0.66
ACGTcount: A:0.00, C:0.07, G:0.76, T:0.17
Consensus pattern (11 bp):
TGGGGGGGGCT
Left flanking sequence: Indices 19045 -- 19544
CAATATGCAGCTGCTAAAGCAGGATAAAAAGCTTGTCTGCCGGCGGGGGTTGGATGAGATCCGTG
TTCGTGGACGAGCATCATCCATGAAGTACGTCCAGACTTAGCTAATCTTCTTCTTCGCGCGAGAC
TTGGGAGGAGTCGGTCGGGGATGACGATCTGTTCCGACGCTAACCCCCTATTCTTCAGTGCGAAA
TGCTTCCGACCTTCGAGCGGCGATGGAGGCTTTTTCACTCGCCTATCGGCGTCGTATGTTCAAAA
GACGGCCGGCCTCAGTGCGACTTGAAAGAGAAGTGGCGAGCCGGCTGGTGTTTAACCTCGAGGAC
TTTGAAACAACAAAGGCAAAGAAGTCGGACCCACTTTATCGGGCACCCCCGGCCCTCCCTTTGGT
CGAGCACCACTTGCGTAACATATTTATTTTTTTCGTCAACTTTCTTAGCATAACGAAACTGATGC
TAGCAAATAAGAAGTTTACTTCGAGGCCCCGCGGCCCCCAGGGGA
Right flanking sequence: Indices 19586 -- 20085
TAGGCGGCGGCCCGGAAGACTAGTAATTGTAGGCCTACGCAGGCCACCCAAATCCCTGTTCCGTA
ACGTTCCCGTAGGTGCTTTATGATGCGAAACTGGTACGTACGGTTCGGTGACGTAAAATTAGTTC
TACCTATTATGAATGAATCGTAACAGAACCCGGCTGAGCGATATGCGAGAGGGCCGAAGGCGGCG
CGAAGAGCAGAAACAAAATGAAAAATTTTTTTTGAAGTATCCCCCAACTCCTCCGATAAAACAAA
GGAAGGAGAGTACGGGGCCGAAGGGCTTGAAAATATCTAGAAATTCATATTTCTCGTTTGGGGAT
TAATCAAACGATTTTGAGCCAAATTTCGGGTCCGAAGGACTGAAAAATTAATGGAAAAAAACGAG
GTAAGCGAAATATGCCAACAATGAATCAGCTTGTTCGTAAGGGCAGAGAGTCGAAACGACGCACA
AAGCGTACTCGCGCTTTGAATAAATGTCCCCAAAAGCAGGGGGTT
Found at i:19569 original size:21 final size:21
Alignment explanation
Indices: 19545--19584 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
19535 CCCCAGGGGA
19545 TGGGGGGGGCTTGGGGGGGCT
1 TGGGGGGGGCTTGGGGGGGCT
19566 TGGGGGGGGCTTGGGGGGG
1 TGGGGGGGGCTTGGGGGGG
19585 GTAGGCGGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.07, G:0.75, T:0.17
Consensus pattern (21 bp):
TGGGGGGGGCTTGGGGGGGCT
Left flanking sequence: Indices 19045 -- 19544
CAATATGCAGCTGCTAAAGCAGGATAAAAAGCTTGTCTGCCGGCGGGGGTTGGATGAGATCCGTG
TTCGTGGACGAGCATCATCCATGAAGTACGTCCAGACTTAGCTAATCTTCTTCTTCGCGCGAGAC
TTGGGAGGAGTCGGTCGGGGATGACGATCTGTTCCGACGCTAACCCCCTATTCTTCAGTGCGAAA
TGCTTCCGACCTTCGAGCGGCGATGGAGGCTTTTTCACTCGCCTATCGGCGTCGTATGTTCAAAA
GACGGCCGGCCTCAGTGCGACTTGAAAGAGAAGTGGCGAGCCGGCTGGTGTTTAACCTCGAGGAC
TTTGAAACAACAAAGGCAAAGAAGTCGGACCCACTTTATCGGGCACCCCCGGCCCTCCCTTTGGT
CGAGCACCACTTGCGTAACATATTTATTTTTTTCGTCAACTTTCTTAGCATAACGAAACTGATGC
TAGCAAATAAGAAGTTTACTTCGAGGCCCCGCGGCCCCCAGGGGA
Right flanking sequence: Indices 19585 -- 20084
GTAGGCGGCGGCCCGGAAGACTAGTAATTGTAGGCCTACGCAGGCCACCCAAATCCCTGTTCCGT
AACGTTCCCGTAGGTGCTTTATGATGCGAAACTGGTACGTACGGTTCGGTGACGTAAAATTAGTT
CTACCTATTATGAATGAATCGTAACAGAACCCGGCTGAGCGATATGCGAGAGGGCCGAAGGCGGC
GCGAAGAGCAGAAACAAAATGAAAAATTTTTTTTGAAGTATCCCCCAACTCCTCCGATAAAACAA
AGGAAGGAGAGTACGGGGCCGAAGGGCTTGAAAATATCTAGAAATTCATATTTCTCGTTTGGGGA
TTAATCAAACGATTTTGAGCCAAATTTCGGGTCCGAAGGACTGAAAAATTAATGGAAAAAAACGA
GGTAAGCGAAATATGCCAACAATGAATCAGCTTGTTCGTAAGGGCAGAGAGTCGAAACGACGCAC
AAAGCGTACTCGCGCTTTGAATAAATGTCCCCAAAAGCAGGGGGT
Found at i:25359 original size:19 final size:19
Alignment explanation
Indices: 25335--25372 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
25325 CGCCGAGTCA
25335 GTTTCAGTATCTGCGATCT
1 GTTTCAGTATCTGCGATCT
25354 GTTTCAGTATCTGCGATCT
1 GTTTCAGTATCTGCGATCT
25373 CTGGGTCCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (19 bp):
GTTTCAGTATCTGCGATCT
Left flanking sequence: Indices 24835 -- 25334
CAGTTCCGGAGTTGCGGGCCTCCACAACAGCACTCTTCGTTGAATCCGTACCTAGCCCGCTGCAG
CGGGCTAGGTACGGATTCTGGTTTTTCTTTTCGCGGTTTAATCGGATCTTCGGGCTTCCGACCGC
GATTATTTTGCTGGCCGATTGAGGAGGCGCTCGTATCAAGGCTCTCCTCGACGGTAGAGGACTTG
GAAAGGGCTCTATCACAATTACCGAATGTCATTTCCGGCCCAGGCGGGGACGGTGAAATGGGATT
GCGTCGCGTTTCCTCTGTCCCGAATGTCTAAGAGCTCCATAATTTGCGGCAGCTCGCACTACTAC
ACGAGTTTGGTTCGCGGAGTGCTTCCGCGAATGAAATCCTAGATAGAGGAGTATCAGGACCGGTC
TCTGAGCTTTATCAACGGATCAAATCTGCCGCAGTCTCAGATATTGCCTGGGCCAGTCAGTCCCG
GAGCTGTATCAACGAACCAGATCCGCTACTGTCTCCGCCGAGTCA
Right flanking sequence: Indices 25373 -- 25872
CTGGGTCCGAAGGCCGGCCCCCAAAGCCGGACTTTTTTTGCCTGACAGGGCCCCGCCGGACTATG
TCTGTCAGACGGAGAAGGAAAAAAAAACTGAAAAAAAATACTGTCAGACGAAGAAAGAAAAAACA
CTGACGGGAAAAAAACAAACTCACAATAAGAGGAAGAAACTGACAGGACACAGGACCTTAGGGAG
AGGCTCTTTCTCAGTACGAGTTCTTAATACTCTAGTTTCGAACAGGTATTCCGGCTCCGGTGCCG
GCGATTAGGCGACTCAAGCAACAATATCGGGTCGAATAGAAGTGGAGGTCCCTCTGGGACCAGTA
AAAATCACCGCGGGAAGGAAAATCTACAAAAAACCTCCCCGAGTTCGTCAATTGCCAGGGGGGGG
GGCTTGGGGGGGGGGTTCGGGGGGCGGATACCGTGGAATGGAATTATTCGGCGCAAGCTATGGGC
TTGCGCATTTAGTCACCAAAGCCACTTCGGAGACGATGAAAAAAC
Found at i:28762 original size:33 final size:33
Alignment explanation
Indices: 28720--28787 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
28710 AGCCGGGACC
28720 TTAGAGAGAGGTAATGCGAAGAGTCAAAAATCT
1 TTAGAGAGAGGTAATGCGAAGAGTCAAAAATCT
* *
28753 TTAGAGAGAGGTAGTGCGAAGAGTTAAAAATCT
1 TTAGAGAGAGGTAATGCGAAGAGTCAAAAATCT
28786 TT
1 TT
28788 TTTTCGACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.25
Consensus pattern (33 bp):
TTAGAGAGAGGTAATGCGAAGAGTCAAAAATCT
Left flanking sequence: Indices 28220 -- 28719
GTATTTGTGTATAAATTGGTTAACCTGAAGCCTTTAGCCAACTTCAAGTTGGCGCTAGCTGCTCC
GGGTCCCGCCGCCCGCAGGGGGGGGGCGCTACTTTGCTCGTATATAAACTCAAAGCGGAAGCGAA
ATATTATTACAAGAAGTATAGATCTGATAAGCACCCCTTTGTAGAGTGGCCAGTAAATCTCTGAA
TAATTATGAAAATAGTTCTGACGGCTAAACTAACTAATCCCCCCACTTAGAAGGCCGCATTTGGC
CCTTCTTCTCACTTTCAGAACCTGCGAGTCGTGGCCATATCTGGGGGGAAAAACTGCGCAACAAC
GAGGCCCCCTGCGGGACCTGTATTTGAAACGGCAGGTCGAGTGCCGGCGGGCCCGCCGGGTGGCA
TGGACAACTGACCGGGTTATTGCAGTGTGTCCTTGGCGGTGTCGAGCACCTACAAAGGTGGCCCG
TGGGGCAGGGAATACAATAAATAGAAATTGGCTTTAGCCGGGACC
Right flanking sequence: Indices 28788 -- 29287
TTTTCGACACTCGACCAACAGAAACTTATAGGAATGGCTGATAAAGAAGCACTACGTGCCTTTAC
GTGGGTAGCCTCGGCTTACGCAACATTGGGGGCTTGGAGTGGTTTATTCTGCTCTCAAAGTCTCG
AATTTTTCATTCTAAGTCCTAACTCGTCGGGGAACGCCATTTAACCGCCCGCAGGGGGACCTAAT
GGATTGGCTCCTCTTTCGAAGTTTCGAATATAGAAATATATAGATATATCTCTAACAACGGGCCC
CCGGCCCGGAGGCACGTAGTGCTGTGAAGTGGGGCCGACCCCCGAGACGACGGGATAGCTTTTTT
TGTCTGACGGGGAGAAGGAACGAAAAACCGCAAAGAAGAAACAGACAAAAAAAGGCGCGTAGCGA
AAAATCTATATTTTGAATTTCCCCCCGCTACGGCATTTTGGAATATGTCAATGATGTGTCCCTAT
AGACCGCAGTCTCGGATTTATTCAGTTCCTTCAACAAAACACGCG
Found at i:30348 original size:15 final size:15
Alignment explanation
Indices: 30328--30356 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
30318 AATCACTGAA
30328 CTAAGGAAGGTGCGG
1 CTAAGGAAGGTGCGG
30343 CTAAGGAAGGTGCG
1 CTAAGGAAGGTGCG
30357 AAGCGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.45, T:0.14
Consensus pattern (15 bp):
CTAAGGAAGGTGCGG
Left flanking sequence: Indices 29828 -- 30327
GTAAACGATTCCGTTTCGCCGGGCCTGTGTTTTACGTAATATGATGTCCCGGCAATAAGTGGTGC
TTCTTCTTTACCCGATACAATGCTCTAAATATACGAAGAAAACAAAAACTAATCTTTACCCGGCC
GGGCGGCAGGGCCGAGGCAAGCATACGCGGGGGCTAATAACCATAGATGTTGATCTGGCGTTGTT
TCCGCGGCTGCCGTACTCCATGAATCCGTCCAACGGAGGTGGGCGGCGCCCATAAGAGTAGCTTA
AAAGAGCGGGGAATCGAAAAAGAAAGAAAAAGAGAGGCGCCCGCGGCTCCGCCGCCCAGTCCCCT
CCCCCCCCCGTCCCAAGTCCTGAGGGCGCTACGCGCCTATTCAGCTATAATGATTTCGGGGGAGA
ATTACATAGTTAATGGCATTCATCGCCAATGCGATTACAATTTGACTTCAAAATGCAATTACATA
ATAAATCGCAAAAAGCAAATCAATAAGGTGCGGCAAATCACTGAA
Right flanking sequence: Indices 30357 -- 30856
AAGCGGGAAGAAAGTTAGAAGGTGCGCAGCGGGAAGAAAGGACACGCTCTTTCTTTTTTCTTAGC
CTTTCCCCTCCTAAGCATTAATATAATATTCGGCAAGGTGTAGCGCAATCTGGTAGCGCGTCTGC
CTTGGGCGCAGAAAGTTACAGGTTCAAATCCTGTCACCTTGAATCAAAATCGGAGTCAACTAAAA
AGATGAAAATAAATCGACCGTTATCACCTCACCTTACCATCTATAAACCACAGCTTACTTCGACG
TTTTCTATTTTCCATAGAATATCCGGGGCGTTCTTGGCCACTATGGTTTTGTTTAGTATTTTTTC
TTTCAAAATAGGTGATCTCAGCCTCACGTTTTATCATTTTTACCAGTATTTCTTCCTTTTAACTT
TCTATTTGAATTGGGTCATTATCAGCTTAGTCAATTTCACTTTATTAGCGTTGTGCTATCATATG
AGTAATGGAGTTCGTCATTTATTGTGGGATTCGGGGCTTTTCCTA
Found at i:31855 original size:21 final size:21
Alignment explanation
Indices: 31831--31870 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
31821 CAAAATGAGA
31831 AAAAGTATGAGCTGGATAAAT
1 AAAAGTATGAGCTGGATAAAT
31852 AAAAGTATGAGCTGGATAA
1 AAAAGTATGAGCTGGATAA
31871 GGAAAAGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.25, T:0.23
Consensus pattern (21 bp):
AAAAGTATGAGCTGGATAAAT
Left flanking sequence: Indices 31331 -- 31830
ATGAACTCGTAAGTGTTTTAGCAAAAATAGTAACTGTGTTTCTAATAATCTACTATCGATTAAGA
CGCGATTTCTCGGTTCGGTGGTGAAAATCACCGAAAATTCACAAAAAATAATAACGTGGGATTTG
ATATTGAGTCAGCTCCGGCGGGGCGCTATTCAGCAACAGTTGGCCGGCTACAGGGATAATATTGA
AGAGTTTATAGGGCCTTTTTTTGTAAACTATCAAACAAATCTTCAGTCAGTGACCTTCCCGTTTT
TTACAAGGCCTTATTATGCTTCAGCTGCAAGAGAAGCACCCGGTGCTGGATCTGCCGCTAGGGCC
GGTAAATCTGCGGGACAATGGGCAACTGATTGGGTCTATTAAAATTCTGGGGGAAACCCTGCCGT
CTATTGCTGTCATTGTAGGCGGGGTTTTTCGGTTATAAAATATATGGCAATGAGCGTGAAAACGC
TCGAAAAGACCGAGCCCTGGACCAGAAAGCTCGCCCAAAATGAGA
Right flanking sequence: Indices 31871 -- 32370
GGAAAAGTTCGAGTACGAAAAGTTGAAAAAAGGAAAGGGAGGCCATGGAAGATCTTAACGCCCCG
ACTCCGGAGGATCCGCAGTCGGAATTTCTTCAAAAGCATGGAGGGCTTACAGCCGGGGGAGCTCG
CTCGTCAGGCCCCTTTGAGCCTACGGCCGAGCGGGATACGTCTAATATCTTCGATTTATTTTTTT
CACTCTCCCAAGAGCAGCGCTACGCGCCTGGCTTTGTTGTTTTAGCCAAAACTAATCCTTTTTTA
GCTATTACTTCGTCTATTACTATGTTTCCATACGCAGGAATACCCCCCGTTAGCTTGATTTCGTA
GCAAATTCTATTTGTTTTTTGCCGTTTTAGGCTGTGGGGCCTACTTACTAGCCCTAATAGGAGTA
GTTACTAGCGTTATCAGTCGTTTTCATTATATACGCTTCGCGAAAATAATGTATTTTGATACACC
CAAAACATGGATTTTATATAAACCCATGGATCGTGAAAAATCGTT
Found at i:31876 original size:21 final size:21
Alignment explanation
Indices: 31831--31878 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
31821 CAAAATGAGA
*
31831 AAAAGTATGAGCTGGATAAAT
1 AAAAGTATGAGCTGGATAAAG
*
31852 AAAAGTATGAGCTGGATAAGG
1 AAAAGTATGAGCTGGATAAAG
31873 AAAAGT
1 AAAAGT
31879 TCGAGTACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.48, C:0.04, G:0.27, T:0.21
Consensus pattern (21 bp):
AAAAGTATGAGCTGGATAAAG
Left flanking sequence: Indices 31331 -- 31830
ATGAACTCGTAAGTGTTTTAGCAAAAATAGTAACTGTGTTTCTAATAATCTACTATCGATTAAGA
CGCGATTTCTCGGTTCGGTGGTGAAAATCACCGAAAATTCACAAAAAATAATAACGTGGGATTTG
ATATTGAGTCAGCTCCGGCGGGGCGCTATTCAGCAACAGTTGGCCGGCTACAGGGATAATATTGA
AGAGTTTATAGGGCCTTTTTTTGTAAACTATCAAACAAATCTTCAGTCAGTGACCTTCCCGTTTT
TTACAAGGCCTTATTATGCTTCAGCTGCAAGAGAAGCACCCGGTGCTGGATCTGCCGCTAGGGCC
GGTAAATCTGCGGGACAATGGGCAACTGATTGGGTCTATTAAAATTCTGGGGGAAACCCTGCCGT
CTATTGCTGTCATTGTAGGCGGGGTTTTTCGGTTATAAAATATATGGCAATGAGCGTGAAAACGC
TCGAAAAGACCGAGCCCTGGACCAGAAAGCTCGCCCAAAATGAGA
Right flanking sequence: Indices 31879 -- 32378
TCGAGTACGAAAAGTTGAAAAAAGGAAAGGGAGGCCATGGAAGATCTTAACGCCCCGACTCCGGA
GGATCCGCAGTCGGAATTTCTTCAAAAGCATGGAGGGCTTACAGCCGGGGGAGCTCGCTCGTCAG
GCCCCTTTGAGCCTACGGCCGAGCGGGATACGTCTAATATCTTCGATTTATTTTTTTCACTCTCC
CAAGAGCAGCGCTACGCGCCTGGCTTTGTTGTTTTAGCCAAAACTAATCCTTTTTTAGCTATTAC
TTCGTCTATTACTATGTTTCCATACGCAGGAATACCCCCCGTTAGCTTGATTTCGTAGCAAATTC
TATTTGTTTTTTGCCGTTTTAGGCTGTGGGGCCTACTTACTAGCCCTAATAGGAGTAGTTACTAG
CGTTATCAGTCGTTTTCATTATATACGCTTCGCGAAAATAATGTATTTTGATACACCCAAAACAT
GGATTTTATATAAACCCATGGATCGTGAAAAATCGTTACTACTAG
Found at i:34775 original size:14 final size:13
Alignment explanation
Indices: 34744--34781 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
34734 CGAAAACCGA
*
34744 AAATAAATATA-T
1 AAATATATATATT
34756 AAATATATATATT
1 AAATATATATATT
34769 AACATATATATAT
1 AA-ATATATATAT
34782 ATGCTGCGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.43
13 3 0.13
14 10 0.43
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
AAATATATATATT
Left flanking sequence: Indices 34244 -- 34743
TACACAGCTTATCAAAGCAACTCCCACGGATCTCGGATTGGATGTGAGCGACACGGTATGCGGTT
TGCTCCCTGTTAGGCCTTTGGATCTCTAGCTATGAAAAAAAGCGAACAGGCGGACAAAACGGCGT
TGAAAGCCCTCTAGCTTCTCTATCAAGCTATAGGGGACGGCGCAGCACAAAATAGTTTTAATTCA
CTTAGTCCACCTGCCTGCCCCGGCTCCCCGAAACTTGCCAAGGATGCTCGAACTCTGCAAGGCGA
TAAGTCTAAACTCTGGAATCGTTAAAAAAGCAGAGCAACCCGACAAATACGAGATCATTCTATGC
CCTGTCTTGCGTCGCTCCACTCAAAAGGCTGTTCAGCACTACAGAGGCTCCCCGCTCTCTGCGCA
TCGACGGGGAGCGCGGAATGGAATCATGCTTTACGAAGAAACCTATTCCGTTTATTTGGAGACTG
GAGGCCCATAACACCTAGAGGAGATAATCGGTTTTCGAAAACCGA
Right flanking sequence: Indices 34782 -- 35281
ATGCTGCGCCCATAGTGGAAAAAGGACCGAAGTAAGTAGAGTTAGTGAGCCGTGTAATGGGCAAC
TATTTCGCACGGTTCGGAGGGCACTTCAGTAAGCCCTACATGGGCTGAAGTCTTGACCCCTATTC
CTTTTGATGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCTATTTTATTTATTATA
TTTGATTCGGAAGTCACCTCTTTATTTCCTTGGGCAGTTTCTCTTAACAAGATTGGTTCGTTTGG
ATTCTGGTCTATGATGGTATTTTTACTTATTTTGACGATTGGATTTGTATATGAATGGAAAAAGG
GCGCTTTAGATTGGGAGTAACTCTTCATTCGCTTTCGCGAATGGAGTGGAAAGAAAAAATATAGG
CCCGTAGGGCTGAAGCTCTCATCGCTCTCTTTCTCCCTCTCCGGACACTTTTTCGGTCCAAAGGA
CACGAGACCCGCCCGCCGGGTATCGTGTGCGTCGTCGTCAAGCCA
Found at i:36963 original size:27 final size:27
Alignment explanation
Indices: 36921--36975 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
36911 AAGACGATTC
*
36921 ATCTTTTTTTTAGTAGTTCATTCATAT
1 ATCTTTTTTTCAGTAGTTCATTCATAT
*
36948 ATCTTTTTTTCGGTAGTTCATTCATAT
1 ATCTTTTTTTCAGTAGTTCATTCATAT
36975 A
1 A
36976 GAAATAGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56
Consensus pattern (27 bp):
ATCTTTTTTTCAGTAGTTCATTCATAT
Left flanking sequence: Indices 36421 -- 36920
GTATAAGGATTTGGAACCAGCCAAGAAAAAGCCATTGAAGTCCTTGGACGGGCCTATGTATTTTA
CGGAGTCAAATCAAAAACAATTTTTGATTTGACCATGAATTCGGCCATGAAACAAAGACAAAGGG
ATAATATGCTAATACCTCGAAGAAAAAGGATAATATTATCATACCTCTATTGACGGGCACGGAGT
GCTGTCCAATTCCAATGTGGCGTGGTGCTGAGCACCATTCCCGAGGAACTCGGCGTCGGGCGCCC
GACACGAAATGGGCCGTAGGGGTCCGGATCATTAAAGGCTCCGGTGTATAGATAATGAAATATAT
ACAATATTTATCCCGGTCGGGAGTGACTGGACAGCGCTTTCCAAAAAATGTTCTTCCGTGTACCA
TACGGGGGTGATGATACAGCCCCCCCCATAATTGCGCGTAGCGCACCGATTCAATTATTTTTATC
AACATCGAAAATTTTGTATTTGTCAAGTAAACCCGAAGACGATTC
Right flanking sequence: Indices 36976 -- 37475
GAAATAGATGATATTTATTCCTACGAGGGTTTAGCGACGACCCACTCTTAGATGCCCTTATATAT
CAATGATAAGAAATATATAAGGTTCTAACTTTCATATTGGCCCGAAGAACGGAAATGCTAGTCGC
TATACAGCGACGAAGCAAATACGCTTCGCGTATCCTGACGGCGTTTGGGGGCCGACAGTATAACG
TGTCATTTCATAAAGGCAGGAGTACCCGTCCCGGCATCTGGCAAGTAGATGGATCAAACCGCCGG
TCGAGCCCTCAGAGATCGAGAATGATTTCCCCGTGAAAAGATAATAAAAATAAAATAGATATCGG
CCATCCCGTCCCCGTTAGTAATGGAGACGCTATGCTTCTCAAGTACTAGGTTCCCGCCGGCGGCA
CCACGTCTACGAAAGAACGGCGGCCGACGCATCGCGGAAGGCGAGGGTATCGTTTCCCGTCTGTC
CGTCGTAGACGGCTAATTGTCTACGATGCTTAGCCGTCCACGACG
Found at i:37658 original size:28 final size:28
Alignment explanation
Indices: 37626--37681 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
37616 TTTTTTTCAA
37626 TAAAAATTGTTATTCCATACTTTATTAT
1 TAAAAATTGTTATTCCATACTTTATTAT
37654 TAAAAATTGTTATTCCATACTTTATTAT
1 TAAAAATTGTTATTCCATACTTTATTAT
37682 CGTAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.50
Consensus pattern (28 bp):
TAAAAATTGTTATTCCATACTTTATTAT
Left flanking sequence: Indices 37126 -- 37625
ACGCTTCGCGTATCCTGACGGCGTTTGGGGGCCGACAGTATAACGTGTCATTTCATAAAGGCAGG
AGTACCCGTCCCGGCATCTGGCAAGTAGATGGATCAAACCGCCGGTCGAGCCCTCAGAGATCGAG
AATGATTTCCCCGTGAAAAGATAATAAAAATAAAATAGATATCGGCCATCCCGTCCCCGTTAGTA
ATGGAGACGCTATGCTTCTCAAGTACTAGGTTCCCGCCGGCGGCACCACGTCTACGAAAGAACGG
CGGCCGACGCATCGCGGAAGGCGAGGGTATCGTTTCCCGTCTGTCCGTCGTAGACGGCTAATTGT
CTACGATGCTTAGCCGTCCACGACGCTTAGCTCTTCGCCCATTCCCCTATCTATAGCTACAGCTC
GGTCCCCAGTTTCTCTTTCTTATATTTCTTTCAATAAAAATTGCTATTTCATATTGTATTACCGT
ACCGTAATACTTCATATACGATGCATCATTCTTTATTTTTTTCAA
Right flanking sequence: Indices 37682 -- 38181
CGTAATTTAATACCTCATATACGATACATCATCAAACCGTTTCAGTTCTGAAGATCTTCAAAAAT
GAAAATTTTTAAACTGCATGGAAATTCGGTTAGAAAGATCCGATTCAATGGTTTCAAATTGACTG
AATTAGTAGTATCTAAAGCCCAAAATTATGCAGGCACGGGTAATGAAAACGAAGTGTAATGTCTT
TCACGAAATAATTCAGAATATAACTACCCGAGTAGTGATACCAATTCCCGAAATAAACTATAGAC
AGATCCCGGGCATATTTTCTAAATATAGTTCGAGAGGATTTGCTAGAGGTGTAATTTCGGATATC
TCGCCTGTGTTACTGGTAGAGACGACTCTCTCTATTTCTTTCTTGTGGAAATACTGAGACCGTAT
CTTCATGGCGGTCGACTTTTTCGCCGCCAATAATTCCTTTTTAGAGTATTAATTACCCTGGGACG
GTTTAGTTCTTTGGAACGGGAGGGCCGCGGCCCCCCCAATTTGAT
Found at i:39732 original size:19 final size:19
Alignment explanation
Indices: 39708--39745 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
39698 ACCCTACTTC
39708 TATGGTCACCCTAACCAGT
1 TATGGTCACCCTAACCAGT
39727 TATGGTCACCCTAACCAGT
1 TATGGTCACCCTAACCAGT
39746 ATTAGGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (19 bp):
TATGGTCACCCTAACCAGT
Left flanking sequence: Indices 39208 -- 39707
GATGTCTGAACCCGCAGTAAAAATGGTCAGTCGAGCAAGACTCGCGCCTGAAAGGGGGAAAGCCA
CAGGCACTATGTGCGCGATCCGAGCGGGCCCTGCGTAGGGGTTAAGAAATGGGCTACCAAGTGAC
TGCTGAACTCACGTTCTCGTTTGATCAATGGCCTTCTTACGAACCGTAGGTGCGAGCTTTCCTTG
CATATGCCTCTCCAATTCGACCTTGCGCGCTAGCGCTGACGAGACCTTAGTCCCAATTTCGTCTC
TAACCCGCCGTTTTTTTCGGAAATATTCAAGTTCAGATTTCGCGTTCGATTTCGTATCCGAACCC
CGCAAGAAATTGGCTTGTTGAAGGGACCTAATCGATAAGTACATCGAGTTGTTGTTATCTTCAAG
GAAAAAACCCTCCAAAGAGAAGAAGGGGTGTTCCAACCCTTTTGTTCTGCAAGACAGTATTTGGG
ACGCAGAAAAGTCTTTAGAACTTGAGGTAGGGTCCACCCTACTTC
Right flanking sequence: Indices 39746 -- 40245
ATTAGGATTTGAACCTTTCAAAGCTATAGAAGCCCCTAGTCTGGCGGATCTACGTATTTTTAACG
GTTTAGGTCAAATCAAAAATATTTTTGATTTGACCATGAAAAAAGGATAATATTATAATACCTAT
ATTTGCGGGCGCGGAGTGCCTTTCAATGACGTGGTGCTGGGCACACCCCCCCAAGACACCATTGG
CCCCCCCGGCATCTTGGGGGGGGCTTGGAACCAACCACTAGGACGCCCTCTCGGGCTCCTGACCC
ATTACAGGGTTCGCGCCAGATGCTTGTTTTTTCTGGTAAGCCTCCCAGGTCCCTGTGTCTTTAGA
TCCACTAGGGTGCCGGCGCTTGACCCTTCATTTCTTCCGAAAGTTTCCCACCTCGATAATATTTG
GTTGTAGTATTCGATTCCAATGCAGCTTTATCGAAAGCTGCCGTTATGTCCGGGTTTTTCCCTAG
CCAATAGGCAATCTCTCCCTTTAATTTCGCGATAGAATTTTCAGC
Found at i:47606 original size:28 final size:28
Alignment explanation
Indices: 47566--47621 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
47556 CGCCCGAGAG
47566 CACGACTGGAATGGCTTAGAAAAGCAAT
1 CACGACTGGAATGGCTTAGAAAAGCAAT
47594 CACGACTGGAATGGCTTAGAAAAGCAAT
1 CACGACTGGAATGGCTTAGAAAAGCAAT
47622 AGAGAGGAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (28 bp):
CACGACTGGAATGGCTTAGAAAAGCAAT
Left flanking sequence: Indices 47066 -- 47565
ATTACCAAACCACCAAATGCTTCGGGCGGCCCTTGGGTATACCATCTCCACGCGTTGTACAAGAA
GCTATACGGGCAGTTATCGAACCCGCCGCCCTCGGCTTCGGCTTACGCACCTCCAGTCATGGTTC
CCGTCCGAGCCGCCGGTCCTCGCGCTGCACTGAGAAAGATAAGAACGAAGGCCCGGATGGGCAAT
CGAAGGGACTTCGATAATATCAACCACCACAAACTAGCTCCGTTCCTCGATGCGAAACTTCGAGA
CCCATAGCTTTTACAACTTTACTGGGAACTGGTGGGGGCAGGGTATGGACTGGGGAAGGAGCCCC
CCCAAACTGGAGTTGGGGTACGGGGGAGTACGCTACGCGCCTATGCTGTCCAGCATATACCCCCA
GACCAATTCTGTGAAGAATTGAAGATAAGATACAAAGCCCCAACCTCTCTAATCACCCGATAGAC
GATTCAGACTGTTAAAAAAATATAAAGAGGAAGGCCGCCCGAGAG
Right flanking sequence: Indices 47622 -- 48121
AGAGAGGAGGTGCGGCGAGGCACTACCTACGATATGCAGACGACTGAATCGTACTTTATCGGAAC
CCGTATCAAGGTTCTGGCAGCGGAATCCATTAGAAGTCACGGGATACTCGTGGGAGGACAACGTA
GGAGGAGTGCGGCGCCGCCGCCGCCACCTGCTCGCTTCCATAGAAAGGATCGTAAAACACATGGG
AAAGGCTCATGTACCCCGGAACCCCGTTAGATAATGGATCTTTTTGGATCACCACGAATTGATCT
TAAGATACCGGGGCATCATGAGTGGATACATGAACTACTACTCCTTTGTGGATAACTACGGAATG
TTGAAACGAGTGGCGTACATCGTGAGGCGGCAGCAGGAACTTCGAAACGAAAGTTCGAAATGTTG
TCTGTAGCAAGCGTCTTCAAAGGGAGTGGGACAAACAGGAGAAAATAATTATAGGCGGCTACATT
CCCCCTGAAGAAACGATGTTTTCCGTTTCGCAATAAATAATAAAA
Found at i:53934 original size:53 final size:53
Alignment explanation
Indices: 53844--53955 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 53
53834 TCTTGGTCCC
* * *
53844 AAGGGCCGAAGGCCGGAAATGGCTTGACGATTTCCGCACACGATACTGGGAAG
1 AAGGACCGAAGGCCGGAAATGGCTGGACGATTCCCGCACACGATACTGGGAAG
* * *
53897 AAGGACCGAAGGCCGGGAATGGCTGGTA-GATTCCCGCACACGATATTGGGGAG
1 AAGGACCGAAGGCCGGAAATGGCTGG-ACGATTCCCGCACACGATACTGGGAAG
53950 AAGGAC
1 AAGGAC
53956 ACGAGACCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 51 0.98
54 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.36, T:0.14
Consensus pattern (53 bp):
AAGGACCGAAGGCCGGAAATGGCTGGACGATTCCCGCACACGATACTGGGAAG
Left flanking sequence: Indices 53344 -- 53843
GGAAAGAATCGAATATGACCCAAATCGTTCGTCTTGGATTGCTTTAGTACGATGGATCGAGGGGG
TTCTACGCCCTGGAAAGCACCCGGCTTTTTATAGAGCGAATAGTCGAAGAGAAAAAAATCTGTTC
TTTTTCGGCCTCTTATTTTCGTTCTCTTCGCTGCCTAGACGAGCTCGGGGAATAAAATACGAAAA
AACGAGGCCCGGAGGGCCCTGCGGGCAGATACTGGAAAGTTCTCGGGTCTTAAGGGCACGAGACC
TTAGGCCCGAAGAAATGGCCTTAAGACCTTTGGGTAGCTTTCTTGGTTTACCCGGCGTAGCAGTC
GCTGGGGCAAAGCCCGCTTTCTTCGCTTTTCGAATGAAAGGCCCTTCCTCCCTAACGGGAAGAGA
GCGCCTGTCGGCCCTCGGGGAAGAAAATACGTTCTCTCGAAGCGAAGGCCAAAGGTGGAGAACGC
ATAGCGGGGCGACGAAAATCAAAAGCCTAGTACTCTCTTGGTCCC
Right flanking sequence: Indices 53956 -- 54455
ACGAGACCCAAGGGAGAGGCACGTAGTGCTCGACCCTTCTTTCTACAAGCCCGAACACGCTCCCC
GCCGCGCACTACGTGCCGTCGGGCCTTCGGGTCGAGTGCTACGCACCTCCGAGCCTTTCACTTAT
ATATTAGCCAGTGAAAAATTGGAAGCAGGCAAGACGGTGATGAATTTTAATTGGTCTAAACCTTC
GACCCCGTTAAACTACCATCAACCTTCCCAGAAAGCTAATGACCCTTCGGGCCTTAGGGTGGAGA
CCGCGCCGCGGGATAGCCAAGCTTGGCTACACGGAGACTACGCTTCTAGTGAGAATAAATACATA
CTTGATTCATATTATCAAATGGTCGGAAATTGCATACCATTAGCCAAAATACCTATAGGCACGTG
GGTACATAATATTGAAAGGAACCCAGGTCAAGGCGCAAAGTTGACTCGAGCTGCGGGAACCTTTG
CTCAAATAATTAAGAAAGTTGAGAATACACCACAATGTATTGTGC
Found at i:62174 original size:27 final size:27
Alignment explanation
Indices: 62144--62199 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
62134 ATAAACACTC
* *
62144 ATGCAAGAAAAGCACGGTATTACTAAT
1 ATGCAAAAAAAACACGGTATTACTAAT
* *
62171 ATGCAAAAAAAACACTGTATTACTTAT
1 ATGCAAAAAAAACACGGTATTACTAAT
62198 AT
1 AT
62200 TCAATCAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.14, G:0.12, T:0.27
Consensus pattern (27 bp):
ATGCAAAAAAAACACGGTATTACTAAT
Left flanking sequence: Indices 61644 -- 62143
AAAAATAAATCATGTCATATATTTTAGGAACCAATCTAAATTCCAATAAACAGGTGAAAATTGCC
TTAACTCGAATCTTTGGAATTGGGCCTAAAAAGGCAATTCAAGTTTGTGATCGATTAGGCCTCAG
CGATAACATTAAGGTTAATAAGTTAACTAAGTATCAATTTGACCAAATTATAGAAATAATAAGTC
AAAATTATTTAGTCGATTCGGAATTGGAGAGAGTCATTCAGAGAGACATCAAACGATTAATTAGT
ATTGGTTGTTATCGCGGGTTTCGCCATAATGCAGGATTGCCCTTACGCGGCCAACGGACTCATAC
TAATGCTAAGACTTCTCGCAAATTGAGATACATTTCGATCAGAAGTTGATAAAAGTTTTTTTCGT
TTTTTCCAGTTCGTACAAAATATCTTTGTAATTAGTGAACGGATTGGATGGATCATAAAAAAACG
GAATCGATGGTATCGAGCAACACCAAAAACATTCAATAAACACTC
Right flanking sequence: Indices 62200 -- 62699
TCAATCAACTTTTGGTAATACAATTATTACTTTAACGGATTATGACGGAAATACAAAAACTTGGG
CCTCCTCAGGTTCAGTGGGGTTCAAGGGATCTCGTCGCTCAACCAATTATGCTGCTCAAGCAACT
GCAGAAAATGCCGCGCGAGCTGCCATTCAACTTGGATTTAAGTTTGTCGAAGTGAGAATCAAAGG
ATTGGGTTATGGAAAGGAATCTTCGCTACGTGGTTTAAAACTAGGAGGTCTTATTATTACCAAAA
TTCGCGATGTAACCCCAACGCCACATAATGGATGCCGACCTCCTAAAAAACGTCGTGTTTAAATA
TCATCATAAAGTGCTGTGTCATCATAAAATGGTAAATTGAGTTTCAAGAGTAGAAAAAATTTTTT
TAGGGTCCGAGGGAGACTTCTTTCGCTTCACAGGGCTTAACCCTTCCTTCGTGAAGGCGAAGAAG
GAAATCTACAAGCCATGTATGGCCTTCGGCCCTTCGGACCCACAA
Found at i:89413 original size:15 final size:15
Alignment explanation
Indices: 89393--89424 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
89383 ACTTGTTTCT
89393 ATGATAGCATATGCC
1 ATGATAGCATATGCC
89408 ATGATAGCATATGCC
1 ATGATAGCATATGCC
89423 AT
1 AT
89425 TACGTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (15 bp):
ATGATAGCATATGCC
Left flanking sequence: Indices 88893 -- 89392
ATGGCTTTCGAAATAGAAAGCGGATATAGAGAAAAAAGCTTGTCGATTTACGAAGATCCTATGAA
AACATCAGGACCTTTGGATTGGTTGGAAATTGCTCATATTTATTTATGGGAAGATTTTTAAAATA
TTTTTGGGGGGGCAATTTGTTTACAAGCCCTCCCGCACTCATTTTTTTGAGCGCGGGAGCTCGCC
AGAAGTTGGTTGGTAGTTTCATTTAAAATCAAACCCAAAAAGGGGAGTTTACTATATGAATTTGT
ACTTTTTAATCCGTCCGGTTACCCCCCCCGGTGATATCGCCCAAGCCAATCCCCTGGCCCCCTAT
AGCCCGTGGGTCGTCACGGCAAGCATGGTTTTATATTTAATAGATCACTGGGTAGGCGGATTCCG
CTTTTTTGTCCTTTTGCAAAACTAGATTCTTTCAATACTAGTTGTATTATTGCCTTCGGCTGGAG
GAATGGTTACGGGACAACTATTACGGGAGATTTATACTTGTTTCT
Right flanking sequence: Indices 89425 -- 89924
TACGTTTTTATCTGTTGAACCCGGGAACGAAACGGGGTTATTCATATATATAGCATCAGTTTACT
ATATAAAACTCAGGTATAAAATTATAAATGATAATCAACTCCAATTTTATAGAGCTTATAAGGAT
TCTTGGGGCGCAGGCGGTTTGAACGATGCCAACCGCACCCTTGAAAATCGTTCGGATTTAAATGG
CAACCGGATACCCAAACGTAACATGGGGAGCTGTGGGCTAGCAAACGCAGCGCCCAAACATGCCC
CGGAAACATTGCCAGCCGCCGCTACGGGTACGGGCAGACTAGCCACAATTGTGGCTGGAGGGGCG
GTCGGCATTGCAACCACTAAGATGATCGCGGACTCGAACGGAGAAATCCAGAAGTCAAAGATGGC
GGCGCTGAAGGAATATCAACATAATTTGGCCAATATGGCATTGGAGCTTGGAATGAACCCGTCCA
AGCACACGAGGACAAGTTCTCACAATTTGAGGACGCACGGGCAGA
Found at i:90943 original size:2 final size:2
Alignment explanation
Indices: 90936--90963 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
90926 AGAAATTCAA
90936 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
90964 TTTTTTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 90436 -- 90935
ACTAATCAAACGCTGCGTCGTTTCGGGCAAGAAATTCAGTAATGACCTAGTAGACGACCGCGAAC
ACATAATAACAGAAGTTGTTTCCAATCAGATTCAAAAAGAGCCAAGCTATCCCAGCCCGCCATAA
AACCCAATAGATGATATAGTACCCGAAATCTCCCCGCTAACATGAAGGAAGCATTGCCAAATGAC
TAAATTATTTCGCTAATATGACTAAATCCCGAGGATTTGTAGATAAATATATAGAATTAATACTC
CGGAATCCTCATCGCGCTAATGACACCTTCGCTAAATGACGCATATTTAGCTAATATGACTAAAC
CTGTTGGGGATCTGTAGTATAAGGAATACCCCTTAATTAATATGGAATTAAAGGGCCGGGAAGGG
AATATATAATAGGAATCTATATGAGATATGGAAGAATTCCATAGAATTGAGAAGAGTTAATCAAT
TGAATTGGAATAAATGGAATGGATTAGGAAATAAAAGAAATTCAA
Right flanking sequence: Indices 90964 -- 91463
TTTTTTGTGTATAACGGAGGAAATGCATAAATAAAATAGATTCTATTATTTCTAGGAGAGACTAT
TAAATTCATGTTTATTCTTCGCCCATCTTCCAAAAGAAAATGAGCTACTATTTATCTTCTTCGAG
GGAGAGGATGAGCTGCAATAGATATATAGATATATCTCTATATATATATATATATATAATTTCTA
GGTCAGGGGAGATAGCCTTGACCTCTAACCTTTGAAGATACTGAAGGCCTGGATCTTCCCTTGGG
TTACCACGTTCTCGAGATCTGTTACATACTCTAGTTTTCCCTCGGGAACAAAGACTTCCATCGTG
GAAGTGACATAGGAACTCCGGGCGGGGATCATGGCACTTCTCATAGAACCTTGTGGGCGCTTCCG
CTAAGAGCCCTCATAGGACTGAAGATAGGAAGCATAGATCGGGGGGGGGACGTATTTTCGGTCAC
GCGGTACGTACGGCCTGTCCCGTAAGCACCCCGTCCTTATGGAGT
Found at i:99785 original size:18 final size:18
Alignment explanation
Indices: 99762--99796 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
99752 GGTAAAAGAG
99762 GAGCCCTATACGCCTATA
1 GAGCCCTATACGCCTATA
99780 GAGCCCTATACGCCTAT
1 GAGCCCTATACGCCTAT
99797 GGAAGATCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (18 bp):
GAGCCCTATACGCCTATA
Left flanking sequence: Indices 99262 -- 99761
GCCTTCGACTGGCCTTGCCTTTGCTAGGCGCTTGAGGCGGCGTAGTGCAGGCGCCGAAGGCCTAT
TGTGCGGCGGGGCCCTATGCCGCCTTCCTTCTCCCGCCGCCTACCCTAAAGAAGGCCTTTTCTGA
AATTCTATATATATCACGATTTTTGAAAAAGCAAATATCTTCATATATATATATATAATCGAAAA
AAGAAAGATACGATTTATGGATAAGCAATTGTTTTTCGAATCTCTAATAGCTACTTCACCGAAGA
AAAGGATACATAGGAAATGTCTTTTGCCGCTATCTAAAGCACCTGAAAACTGCCCCCCCCCCTTA
CTCTGTGCCGGGCGTAAAGAAGTAGTCGTTTTGCCCAAGAGCATCCAATTCCGAGCATTCGGCTC
ACCCGCATTTGTACGTTATTTCCGAATGGGGCGGCAGAGGGCGCAAACGCGCAACAGGCGGCCAA
GGCGCGTAGCGGAAAGGCGCAGCTCTCGACCCCCCGGTAAAAGAG
Right flanking sequence: Indices 99797 -- 100296
GGAAGATCGGGTTCGGCGATCGAGGAGCGTCGCGCCCCCCTTTTTTTCCACTGTCAAAAAGAAGA
GCAGCAGCAGTTCAAGGCGCAAGGCCTGTTTCGGCTCATGAAAGACATAAATCTGTGGATAGCGG
CCGCGAAAGCGCTGTCACCGCTACGCGCCGCCGCCCCCCTTTACGCCGCTACGCGCCTTTACGCC
GCCCCATTCGGTGCGGGTGAAAGGCGCGTAGAAATCAAAGCACTAGAAACACTGAGAGACTCCGT
GATGAGCAGTAAAGTGGCCGAAGGAAAACAGGCCGGAACAACAGACGCCACGCCCCCCCCCGGAG
CCCTATACGCCCTTTACGCCTTCGGCGCAAAGCAAAAAGCCCGTCGAAAGGGTCCGCTTCTAGAC
GAAATAAGAGCCGATTTCAGGCGGCGCGTAGCGGAGGAGGAAATGGGGGGCCCGCGGCGCGTAGC
GCCCTTTACGCCGCCTTCTAGGCCTTCCGCCGCTACGCGGCGCCT
Found at i:99975 original size:18 final size:18
Alignment explanation
Indices: 99952--99994 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
99942 CACCGCTACG
*
99952 CGCCGCCGCCCCCCTTTA
1 CGCCGCCACCCCCCTTTA
* * *
99970 CGCCGCTACGCGCCTTTA
1 CGCCGCCACCCCCCTTTA
99988 CGCCGCC
1 CGCCGCC
99995 CCATTCGGTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.07, C:0.56, G:0.21, T:0.16
Consensus pattern (18 bp):
CGCCGCCACCCCCCTTTA
Left flanking sequence: Indices 99452 -- 99951
GAAAAAAGAAAGATACGATTTATGGATAAGCAATTGTTTTTCGAATCTCTAATAGCTACTTCACC
GAAGAAAAGGATACATAGGAAATGTCTTTTGCCGCTATCTAAAGCACCTGAAAACTGCCCCCCCC
CCTTACTCTGTGCCGGGCGTAAAGAAGTAGTCGTTTTGCCCAAGAGCATCCAATTCCGAGCATTC
GGCTCACCCGCATTTGTACGTTATTTCCGAATGGGGCGGCAGAGGGCGCAAACGCGCAACAGGCG
GCCAAGGCGCGTAGCGGAAAGGCGCAGCTCTCGACCCCCCGGTAAAAGAGGAGCCCTATACGCCT
ATAGAGCCCTATACGCCTATGGAAGATCGGGTTCGGCGATCGAGGAGCGTCGCGCCCCCCTTTTT
TTCCACTGTCAAAAAGAAGAGCAGCAGCAGTTCAAGGCGCAAGGCCTGTTTCGGCTCATGAAAGA
CATAAATCTGTGGATAGCGGCCGCGAAAGCGCTGTCACCGCTACG
Right flanking sequence: Indices 99995 -- 100494
CCATTCGGTGCGGGTGAAAGGCGCGTAGAAATCAAAGCACTAGAAACACTGAGAGACTCCGTGAT
GAGCAGTAAAGTGGCCGAAGGAAAACAGGCCGGAACAACAGACGCCACGCCCCCCCCCGGAGCCC
TATACGCCCTTTACGCCTTCGGCGCAAAGCAAAAAGCCCGTCGAAAGGGTCCGCTTCTAGACGAA
ATAAGAGCCGATTTCAGGCGGCGCGTAGCGGAGGAGGAAATGGGGGGCCCGCGGCGCGTAGCGCC
CTTTACGCCGCCTTCTAGGCCTTCCGCCGCTACGCGGCGCCTTGGCCGCCTTCAAAAAAGGACCC
GCTGCGCCGCGCCTTTGGCGGCTCCTCGTGCCGCCACGCGTCTTTGGGTCCGCCGCGTAGATCCT
TCGGACGCTGGAGCTGCTGCTTTGGCAAAGAAAAAGGCACAGAGTAAGTCTTTCGACCCGCCGCC
CTTTACGCCCTTTACGCCCTTTACGCCTCAGGACTTCTTTGCTAC
Found at i:100460 original size:9 final size:9
Alignment explanation
Indices: 100446--100476 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
100436 TTCGACCCGC
100446 CGCCCTTTA
1 CGCCCTTTA
100455 CGCCCTTTA
1 CGCCCTTTA
100464 CGCCCTTTA
1 CGCCCTTTA
100473 CGCC
1 CGCC
100477 TCAGGACTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.10, C:0.48, G:0.13, T:0.29
Consensus pattern (9 bp):
CGCCCTTTA
Left flanking sequence: Indices 99946 -- 100445
GCTACGCGCCGCCGCCCCCCTTTACGCCGCTACGCGCCTTTACGCCGCCCCATTCGGTGCGGGTG
AAAGGCGCGTAGAAATCAAAGCACTAGAAACACTGAGAGACTCCGTGATGAGCAGTAAAGTGGCC
GAAGGAAAACAGGCCGGAACAACAGACGCCACGCCCCCCCCCGGAGCCCTATACGCCCTTTACGC
CTTCGGCGCAAAGCAAAAAGCCCGTCGAAAGGGTCCGCTTCTAGACGAAATAAGAGCCGATTTCA
GGCGGCGCGTAGCGGAGGAGGAAATGGGGGGCCCGCGGCGCGTAGCGCCCTTTACGCCGCCTTCT
AGGCCTTCCGCCGCTACGCGGCGCCTTGGCCGCCTTCAAAAAAGGACCCGCTGCGCCGCGCCTTT
GGCGGCTCCTCGTGCCGCCACGCGTCTTTGGGTCCGCCGCGTAGATCCTTCGGACGCTGGAGCTG
CTGCTTTGGCAAAGAAAAAGGCACAGAGTAAGTCTTTCGACCCGC
Right flanking sequence: Indices 100477 -- 100976
TCAGGACTTCTTTGCTACGCGCCTGGTACAGGAAGTGATTCGCAGCATCCTAGAGGGGGTTTACG
AACCGTACTTCCTTTCGTGTTCCCATGGATTTCGACCGGGCCGCTCCCAACATACCTGCTTGAAG
CAGATACGCCGTGATTTTGTGGGTACCGTCTGGTTCATAGAAGGCTTCGGCTTCTCGCAATGCTT
CAATAAAATAGATAAGCAAGTGCTTCTAGGCCTCATGCGGCGAAGAATTCGAGACAACAGATTCT
TGAACCTTTTTTACCAGGTTCTAGAAACGAGCCCGAGCCCAAGCGGCGTAAAGGGCGGCGGGTGC
GCCGCAGCGGCCGAGGGCACCGGGGGGGGCGGGCCCCTTCTATGCAACACCGGGGGCCTTCTATG
CAACATAGTGCTGCATGAGCTAGACCTTTTTGTTATGCGACTGAAACGTATTGTTGACAGGGGGG
GAAAAGGAGGCGGCGGAGGGCTAACAGTTAATGAGTCGTGGCAAC
Found at i:100855 original size:21 final size:21
Alignment explanation
Indices: 100831--100871 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
100821 CCGGGGGGGG
100831 CGGGCCCCTTCTATGCAACAC
1 CGGGCCCCTTCTATGCAACAC
**
100852 CGGGGGCCTTCTATGCAACA
1 CGGGCCCCTTCTATGCAACA
100872 TAGTGCTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.37, G:0.24, T:0.20
Consensus pattern (21 bp):
CGGGCCCCTTCTATGCAACAC
Left flanking sequence: Indices 100331 -- 100830
CCTTTGGCGGCTCCTCGTGCCGCCACGCGTCTTTGGGTCCGCCGCGTAGATCCTTCGGACGCTGG
AGCTGCTGCTTTGGCAAAGAAAAAGGCACAGAGTAAGTCTTTCGACCCGCCGCCCTTTACGCCCT
TTACGCCCTTTACGCCTCAGGACTTCTTTGCTACGCGCCTGGTACAGGAAGTGATTCGCAGCATC
CTAGAGGGGGTTTACGAACCGTACTTCCTTTCGTGTTCCCATGGATTTCGACCGGGCCGCTCCCA
ACATACCTGCTTGAAGCAGATACGCCGTGATTTTGTGGGTACCGTCTGGTTCATAGAAGGCTTCG
GCTTCTCGCAATGCTTCAATAAAATAGATAAGCAAGTGCTTCTAGGCCTCATGCGGCGAAGAATT
CGAGACAACAGATTCTTGAACCTTTTTTACCAGGTTCTAGAAACGAGCCCGAGCCCAAGCGGCGT
AAAGGGCGGCGGGTGCGCCGCAGCGGCCGAGGGCACCGGGGGGGG
Right flanking sequence: Indices 100872 -- 101371
TAGTGCTGCATGAGCTAGACCTTTTTGTTATGCGACTGAAACGTATTGTTGACAGGGGGGGAAAA
GGAGGCGGCGGAGGGCTAACAGTTAATGAGTCGTGGCAACAGTCTGCGGCTCTAATCGACCGCAC
TCCGCCGGCACACAGAGCCGCCCTATACGCCTCCGGGGGGGCGGAGGCCGGTAAAAAAGGAGCCG
CCCTATACGCCTTTGTTGGCGGCCACCGCCCCCTCGGACAAAGAATAGGTACCCGTTCTGTGCGG
CAAATAAACTATGTGCGCTTCGCATCTGATTTTCTCATTGGAGTCATTGGTCCAAGAGCTCTGGC
AGAAAGGATACGCGGCTTGGTTACACGATTTATTGAAGTGCGGCTCAAGCTTAGCCTGGATAAGA
AGACCCGCCGTAAACCAATTCAATCTCCGAACGTGCTCTCCGCAGATGCCTTCCAAGGCCCTTTT
TCTTTGCCAAATCAGCACGGCTCTGTGCCTATGCGGGTCTGTAAC
Found at i:102245 original size:2 final size:2
Alignment explanation
Indices: 102238--102265 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
102228 TCAGTGACTC
102238 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102266 GAGTGATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 101738 -- 102237
CATCTCGCAAACTCCAAACGCCGATGTGTCACGCGCTTGAGCTACATACTACGTACGTCATTGGC
CAAAACATATGCGGCCAAATTCAAACTAGGCACAGCAGCTAAGGTTTTTGCCAAGGGTGGCAGGG
ACCTGTCGAAACCAATTCGAAAGGCTAGGAAGGCGAGTAGCGCCAGGCCAAGGCGTAAAGGGCGC
GTACCCCACTTCTTGCCAGCCATTCCCTCCTCCACCAAAAACGCCCCCCCCCACTCTTCTCAAAA
CACTAAATACGATTGTTTATCTAACGTGAGTCCAATGATGGAGGAGGCGCTTGAGTAGCGCGAGA
GGCTGGAGGCGGCGCCGCTTGAGTAGCGGGGAGAAGGAAGGCGCTTGAGTAGCGCCAGGTTAAGT
GGGTTTAAAGAGGGGGGGCGCCGCTACTAATACTAAAGGGCTCCTCCTAAGGCGGCACGCAGTGC
TGATAAATAAACTGATTTGCTCCACAAACATCACATCAGTGACTC
Right flanking sequence: Indices 102266 -- 102765
GAGTGATGTTTACTTTCTGTCAGAAGTGACTCATATATATATATATGAGTGATGTTTACTTGTCA
GGGCCCGGCACAGAGTGCTGAGGGAGAGCGGCCCGGCTAAAAGGATGGATGATTTTGTCATCACT
CATATACACATATGAGTGATGACACTTTGTATACATACAGAGGCCGCTATTCTATTCTATGCCCA
GAGTGGAAAGCGCCGGCCGAAGGCCACCCTGCCTGCTGGAACCCACCCTAAACATTTTGTCAGAA
GTGACTCATATATATATATGAGTGATGTTTACTTTGTACTTGTTTGCTCCTTCTTTGCTTTACAA
CCTGCTGTCTGTCATCAGTGACTTATATATGAGTGATGACACTTTGTATAGTAACAGAGGATTAA
GGAGTGGAAAGGGGAAACTAAACTAAGAGACTCTCCCCCCGCTCTACAGTGAAAGCGCTAGAAAA
ACAAGGATGGGGCAAAGAAAGAAAAATAACCAGAAAAAAGGGAAA
Found at i:112770 original size:21 final size:21
Alignment explanation
Indices: 112746--112788 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
112736 CTTCCCGGAT
*
112746 ATTTGCCATTAGGTTGGATTG
1 ATTTACCATTAGGTTGGATTG
112767 ATTTACCATTAGGTTGGATTG
1 ATTTACCATTAGGTTGGATTG
112788 A
1 A
112789 AACTCCGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.09, G:0.26, T:0.42
Consensus pattern (21 bp):
ATTTACCATTAGGTTGGATTG
Left flanking sequence: Indices 112246 -- 112745
ATACTCCGCTCGGTCCCCAGTTGGTTAGTTAGTTCTTCAACTCTCGACGACAGCGCCCCCCCCGC
AACCTTTCCATTTCCTGGTGTTGGTGCTGGAATTGGCTCTCGATCGAGGAGGCTTGTATCTTTTT
AAAATTGCCGTTGACTAGCGGGTAGGAGATCCATGAAGTGACGGAAGAAAGCCACGATAGCGAAG
ACGACCAGACTGGCCCATAATAGAAAATGAAACAATGGAGCGTAGAGAGACTTGGTGGGCGGCTC
GGGTGGCCCGGGTTCAACGGGGGGTTGTGCATAGATATCGGGATTATTATGTTTTACTGACCAAT
AGAGGTAAAGAAGTCCCAATGCGAACAATACACCGAAAATGACTTGTAATAAGATTATCTTGCGC
AGTTTGAATTCCAGACTAACAAGGTGTCTCTGGATAGATTCCCTTCCATTCGAGTAGTAATCCAA
TTTCTTATCTTCAAATTTCCTCAAGGCTAAATGGACTTCCCGGAT
Right flanking sequence: Indices 112789 -- 113288
AACTCCGCAAACTTTTGGCTTTGTTGTAGCCGGGAGGAGCGATGCGGCGCGGAGCACCGCGTCGT
TCCATCATCTTAGAGTAACAACATACATATATGTATGATGACTATTTTTAGCGGCGCGGAGCACC
GCGTCGTTCCATCATCTTAGAGTAACAACATACATATATGTATGATGACTATTTTTATAGGTTAT
TGTGTGACCGCACATAATACACTCTATGATTGGAGTTATATTTCGGCACTGTCATCGCGCATACT
AGAATCAACATCTGAGATGACAATATAAGAAGAAGGCTTATGGTATAGGTATGTCATCAGATGTG
CTATATATATTATACCTATGATGACAAATTTGGGAATCAAATGATCAAGTTATTAATGAGTAATT
ATATTACCACATCCTTATGATCACGACTTATAGAGGCCCTCGCCTCCTCTTATATTATAACATCC
TTATGATCACGACTTATATATTCGGAAGTCGCCTCCGTTGGAGGC
Found at i:112949 original size:72 final size:72
Alignment explanation
Indices: 112832--112975 Score: 288
Period size: 72 Copynumber: 2.0 Consensus size: 72
112822 GAGGAGCGAT
112832 GCGGCGCGGAGCACCGCGTCGTTCCATCATCTTAGAGTAACAACATACATATATGTATGATGACT
1 GCGGCGCGGAGCACCGCGTCGTTCCATCATCTTAGAGTAACAACATACATATATGTATGATGACT
112897 ATTTTTA
66 ATTTTTA
112904 GCGGCGCGGAGCACCGCGTCGTTCCATCATCTTAGAGTAACAACATACATATATGTATGATGACT
1 GCGGCGCGGAGCACCGCGTCGTTCCATCATCTTAGAGTAACAACATACATATATGTATGATGACT
112969 ATTTTTA
66 ATTTTTA
112976 TAGGTTATTG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (72 bp):
GCGGCGCGGAGCACCGCGTCGTTCCATCATCTTAGAGTAACAACATACATATATGTATGATGACT
ATTTTTA
Left flanking sequence: Indices 112332 -- 112831
TGGTGCTGGAATTGGCTCTCGATCGAGGAGGCTTGTATCTTTTTAAAATTGCCGTTGACTAGCGG
GTAGGAGATCCATGAAGTGACGGAAGAAAGCCACGATAGCGAAGACGACCAGACTGGCCCATAAT
AGAAAATGAAACAATGGAGCGTAGAGAGACTTGGTGGGCGGCTCGGGTGGCCCGGGTTCAACGGG
GGGTTGTGCATAGATATCGGGATTATTATGTTTTACTGACCAATAGAGGTAAAGAAGTCCCAATG
CGAACAATACACCGAAAATGACTTGTAATAAGATTATCTTGCGCAGTTTGAATTCCAGACTAACA
AGGTGTCTCTGGATAGATTCCCTTCCATTCGAGTAGTAATCCAATTTCTTATCTTCAAATTTCCT
CAAGGCTAAATGGACTTCCCGGATATTTGCCATTAGGTTGGATTGATTTACCATTAGGTTGGATT
GAAACTCCGCAAACTTTTGGCTTTGTTGTAGCCGGGAGGAGCGAT
Right flanking sequence: Indices 112976 -- 113475
TAGGTTATTGTGTGACCGCACATAATACACTCTATGATTGGAGTTATATTTCGGCACTGTCATCG
CGCATACTAGAATCAACATCTGAGATGACAATATAAGAAGAAGGCTTATGGTATAGGTATGTCAT
CAGATGTGCTATATATATTATACCTATGATGACAAATTTGGGAATCAAATGATCAAGTTATTAAT
GAGTAATTATATTACCACATCCTTATGATCACGACTTATAGAGGCCCTCGCCTCCTCTTATATTA
TAACATCCTTATGATCACGACTTATATATTCGGAAGTCGCCTCCGTTGGAGGCCTTCGCCTCCCC
TCCGAGTAACTCAGTCGTGATCAGGCGAAGAATAGTAACCAACGTAATAATTGTCATCATAGGTG
TAATATATAGCACATCTGATGACATTCTTACTATTAGAGTATCCAAAACTCAGAATTGGTCATCA
TAGGGGTAATATATAGCATATCTGATGACATATAGGGGTATACCA
Found at i:114440 original size:21 final size:22
Alignment explanation
Indices: 114415--114457 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
114405 TTAGAGTAAG
114415 AAAAA-CCACTAC-AAAGAAACA
1 AAAAATCC-CTACTAAAGAAACA
*
114436 AAAAATCCCTACTACAGAAACA
1 AAAAATCCCTACTAAAGAAACA
114458 TATGAGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.60, C:0.26, G:0.05, T:0.09
Consensus pattern (22 bp):
AAAAATCCCTACTAAAGAAACA
Left flanking sequence: Indices 113915 -- 114414
CGGACAGTTCTTCTTGTTAGGCCGACAAAACCAAGTCCCCAGGCCCAGGCTCCAACCCTGCAGTT
TTTATAGACGTTTTTATAAAGGCTGTTTTTATAGTTTCTTTTCATCTAAACAAATAAATGCTCTA
TCATCCATCAAAAAGATGATTTTTATTATGGTCTAGCCTATAGCTAGAACCTCCAGAACCTCCAT
TTATTTATTTGTGTATCCATTTTTATTGTAGTTATAAACGTCCCTAACTACAATCCAAATCGCAT
TTGTTGGATGTGGGGCGGGCTCCGCCCTATAAGGACTAAGTCTGTAGGGCGGAGCTGTTTAAAGA
TCGGTGCTGCCAGTTGCACAAATGGCTGAGACGTTTAAATGCTTTCCTTGATAGCTGGAAGTTCT
TCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCCACTCAAGTGTCGTTGAATTTTGTTCAAC
AGCCCAAGGACTTGAAGCACACTTGTTTTCACTAGTTAGAGTAAG
Right flanking sequence: Indices 114458 -- 114957
TATGAGCCAAAACTACTAAAGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGACG
TGGCATACCTGCAAGCGGTTTTTTCCTTATTTATCAAATGTTAATGGATTGCGACTAAATATTTT
TCTTTTGTAAACTTCATCTGGAATTAGTCTTTCAGACGTTTCAGTGTGTTTAAATCTCAATGTTG
AATCAGTTCTTTTATTGGTATTAAGAACTGGTTCATAAAGATCGAAATAGTACTGTTCTCGAGCT
AAATAATACTTTTAAGTAATAGTACCTGTTGAACCACATGACTCAATAATAACTAAAATTGTCAT
GACCATATTTCCAAATGGAATTATAAATATATCTGTTATCAGATAATTTAGAAGGGTGATAGTAT
TCAGCAAGTCTATCGCTTAATTTATAACCACTACCTACATATTGTTTACCATTAACTGAATGATG
CCAAAGATAGATTCCAGTTTCCGTTAGATAATCAGAAACGATTTG
Found at i:133061 original size:24 final size:24
Alignment explanation
Indices: 132970--133049 Score: 144
Period size: 24 Copynumber: 3.3 Consensus size: 24
132960 TTATCGCCTT
132970 TTATTTATCTATGATGATTCATCA
1 TTATTTATCTATGATGATTCATCA
132994 TTATTTATCTATGATGATTCATCA
1 TTATTTATCTATGATGATTCATCA
133018 TTATTTAT-TAATGATGATTCATCA
1 TTATTTATCT-ATGATGATTCATCA
133042 TTATTTAT
1 TTATTTAT
133050 TTCTGATAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
23 1 0.02
24 54 0.98
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (24 bp):
TTATTTATCTATGATGATTCATCA
Left flanking sequence: Indices 132470 -- 132969
GGAGATAAACGCTAACCATATAAACAGTGAAGAAATAACACACTTGATTTTCGGTGAGCAATTAT
TCTATAATGATACAGAAAAGGTGGTATAAGAAATACCATAATACGGAAATAAAAAATGATATAAA
ACACGCATAACCGAACGAATTGTGTCAAATACGTAAAGTGATCTAGTTGAGGCCGAAGATGTAGG
ACGTTAGTTCTACATAACATTTCTTTTCTCCCTGTAATGGAAAACGGAAAGAATTGGAATATGAG
CGACTTCTATAGAATGAAAATACGGGCGGGAGAGGAAATCAGAAAAGTTATATCTAGGGACCTCG
TGTTTTGTGGGTTGTTCATTTCTTGCATTTTTTCGTTTTCTCACCCGTTTCATCACCCTTTCTTG
GCGGGAGTCGGATTCGAACCCACAACATTCAGATTATGAGCCTGACGAGTTACCAATTACTCTAT
CCCGCGAACAGCCAACGAAAGAGATATATTTTTGTTTATCGCCTT
Right flanking sequence: Indices 133050 -- 133549
TTCTGATAATTCCTTACTAATGAGGATTCATATTATTTATCTACGATAATTCATCCAGATTTTCT
ATTAGGAATTCTATTAGATCCAACCCAGATTTGTCTAGGTTCAAAAGGGGCGCGCCGCAGCCCGC
GCTAGCCCACTGGGTTGAAGTGACGGAGACGATTTTGTTTGGTGTTTACCCAACCAAAGCGATTG
GCTGGAGACAAAACCACGGTGGCTTCCCCGCGCCGCACAGGCCATGGGGTGTTATGGAGGCACGT
AGATTACCTTAGGCAACGGTCTCGCAATCGGTAACATAATGAAAAAGTACACAGGCACTACGTGC
TTCTTTGCTAGGACATACTTTTTCTAGTTTTTGGCGAAAATTTTCTGGAATACAGGAAGCGAGAA
GGAAGCGGGAAAGTTTATAGAAGGGATTGAGCTACGGGTTTTCGGGGGGCATTACCTCGTTCGGA
GTCTGTGACGACCCCTAAACCCGCCGAAAAGACCTTACACAAAGA
Found at i:134232 original size:14 final size:14
Alignment explanation
Indices: 134213--134239 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
134203 ATAGGCATTT
134213 ACATCAATAATAGG
1 ACATCAATAATAGG
134227 ACATCAATAATAG
1 ACATCAATAATAG
134240 AATAGGAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (14 bp):
ACATCAATAATAGG
Left flanking sequence: Indices 133713 -- 134212
TTGAGCGAATAATTACTTATTCTTACAAAGGGGTTGGGACCGGAATTGTAACCGTAAGTCACTAT
TTCCACTGGGTAACGGCGCGCATCATAAGGGCTCAGTACCTACTAAATAACCTTAGACTCAGAAT
TTCTAAGGGATATCGTAGAGATCAGGTGTTTATGATACTCTACGACGATACCCCCCGGACCCGTA
TTTGAAGGCCTTCGTTAAAAAAAGCCTGGAAGACTCCTTATAGCCTACCTAAAGACTATTCCGTT
ATGTTCGTGAGGAATTTAGGAACAACAACCTACCTAAGGAGGTGGTTTCGAAGTATATAATTAGC
CAGCTTTAGAGCAATCCAATCTCTATTGGGAAAAGAGAGGTCTTTTATATGGAGGTGCGTAGCGC
TATTATTATTTAAGTAATTGCCTCCTCGCCTTCTTTCTTTCTTTCTTCTTACTTCACCTAAAAGG
AAAGGAACCTTCTTCTTACTTCTTTCTTTCTTCTTATAGGCATTT
Right flanking sequence: Indices 134240 -- 134739
AATAGGAGTTGCCTTTACTGGTATTCCTACCTACCTATCCTAAAGAAAGAAAGCGCTTTAGCCAT
CCTTTCCTTCCTTTCCCCTTCCTTTCCGCTACGCGCCTTCGCTCCGCGCCGCTCCGCGCCTTTGT
CAGGGCCCTTTATCCTGCCCTTTTGGGCCCTTTATCCTGCCCATTAAGGCGCGGAGCGGCATCCA
GGCATACATAGGCGCGTTTTCTTTAGGCTAACCACGTTTTCGGGGTTTGTTTTCTTTAACCACTT
CAATAGAGGGCCTTCTTCTATTTGAGTTTTATTCTTCTATTTGAGTTTTCTTCTATTCTTAATAA
AAGCGCTCCGCCCCTCTCTTTAAAGAAAAGACCTCTCTTTAAAGCGCTCCGCTAAAGCCTCTCTT
TTCTTCGCTTATCTTTAGGTAGGAAAGACCTCTCTTTTCTTACCTCTCCGCTTTAGCCTCTCTTT
TCTTCTATTTGAGTTTTATTCTTCTATCTATTTTAGTGTCTATTT
Found at i:134536 original size:19 final size:19
Alignment explanation
Indices: 134512--134553 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
134502 ATAGAGGGCC
134512 TTCTTCTATTTGAGTTTTA
1 TTCTTCTATTTGAGTTTTA
*
134531 TTCTTCTATTTGAGTTTTC
1 TTCTTCTATTTGAGTTTTA
134550 TTCT
1 TTCT
134554 ATTCTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.12, C:0.14, G:0.10, T:0.64
Consensus pattern (19 bp):
TTCTTCTATTTGAGTTTTA
Left flanking sequence: Indices 134012 -- 134511
AGGTGGTTTCGAAGTATATAATTAGCCAGCTTTAGAGCAATCCAATCTCTATTGGGAAAAGAGAG
GTCTTTTATATGGAGGTGCGTAGCGCTATTATTATTTAAGTAATTGCCTCCTCGCCTTCTTTCTT
TCTTTCTTCTTACTTCACCTAAAAGGAAAGGAACCTTCTTCTTACTTCTTTCTTTCTTCTTATAG
GCATTTACATCAATAATAGGACATCAATAATAGAATAGGAGTTGCCTTTACTGGTATTCCTACCT
ACCTATCCTAAAGAAAGAAAGCGCTTTAGCCATCCTTTCCTTCCTTTCCCCTTCCTTTCCGCTAC
GCGCCTTCGCTCCGCGCCGCTCCGCGCCTTTGTCAGGGCCCTTTATCCTGCCCTTTTGGGCCCTT
TATCCTGCCCATTAAGGCGCGGAGCGGCATCCAGGCATACATAGGCGCGTTTTCTTTAGGCTAAC
CACGTTTTCGGGGTTTGTTTTCTTTAACCACTTCAATAGAGGGCC
Right flanking sequence: Indices 134554 -- 135053
ATTCTTAATAAAAGCGCTCCGCCCCTCTCTTTAAAGAAAAGACCTCTCTTTAAAGCGCTCCGCTA
AAGCCTCTCTTTTCTTCGCTTATCTTTAGGTAGGAAAGACCTCTCTTTTCTTACCTCTCCGCTTT
AGCCTCTCTTTTCTTCTATTTGAGTTTTATTCTTCTATCTATTTTAGTGTCTATTTTCTATTTTA
GTTTTCTTCTATTTTAGTTTTCTTCTATTTTAGTTTTCTTCCATAAAGAGTGCATAGGATGGGAA
TTTTAGTACGAGTAAGCTGAACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTGATGGTCT
TTCACCTTGTATGAGAACTTGTATAGAGAAGGATTTCCCGCTTAGATGCTTTCAGCGGTTCTTCC
ATACCAACTTAGCTACCCGGCGCTGCTATTGGCATAACAACCGGTCCACCATAGGTTGACCCAAA
ACCCAGTCCTCTCGTACTAGGGTCGGCTTCTCGCAGTTCTCTCTA
Found at i:134724 original size:23 final size:23
Alignment explanation
Indices: 134692--134744 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
134682 TTAGCCTCTC
*
134692 TTTTCT-TCTATTTGAGT-TTTA
1 TTTTCTATCTATTTGAGTGTCTA
*
134713 TTCTTCTATCTATTTTAGTGTCTA
1 TT-TTCTATCTATTTGAGTGTCTA
134737 TTTTCTAT
1 TTTTCTAT
134745 TTTAGTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 4 0.15
23 16 0.59
24 5 0.19
ACGTcount: A:0.15, C:0.13, G:0.08, T:0.64
Consensus pattern (23 bp):
TTTTCTATCTATTTGAGTGTCTA
Left flanking sequence: Indices 134192 -- 134691
TCTTTCTTCTTATAGGCATTTACATCAATAATAGGACATCAATAATAGAATAGGAGTTGCCTTTA
CTGGTATTCCTACCTACCTATCCTAAAGAAAGAAAGCGCTTTAGCCATCCTTTCCTTCCTTTCCC
CTTCCTTTCCGCTACGCGCCTTCGCTCCGCGCCGCTCCGCGCCTTTGTCAGGGCCCTTTATCCTG
CCCTTTTGGGCCCTTTATCCTGCCCATTAAGGCGCGGAGCGGCATCCAGGCATACATAGGCGCGT
TTTCTTTAGGCTAACCACGTTTTCGGGGTTTGTTTTCTTTAACCACTTCAATAGAGGGCCTTCTT
CTATTTGAGTTTTATTCTTCTATTTGAGTTTTCTTCTATTCTTAATAAAAGCGCTCCGCCCCTCT
CTTTAAAGAAAAGACCTCTCTTTAAAGCGCTCCGCTAAAGCCTCTCTTTTCTTCGCTTATCTTTA
GGTAGGAAAGACCTCTCTTTTCTTACCTCTCCGCTTTAGCCTCTC
Right flanking sequence: Indices 134745 -- 135244
TTTAGTTTTCTTCTATTTTAGTTTTCTTCTATTTTAGTTTTCTTCCATAAAGAGTGCATAGGATG
GGAATTTTAGTACGAGTAAGCTGAACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTGATG
GTCTTTCACCTTGTATGAGAACTTGTATAGAGAAGGATTTCCCGCTTAGATGCTTTCAGCGGTTC
TTCCATACCAACTTAGCTACCCGGCGCTGCTATTGGCATAACAACCGGTCCACCATAGGTTGACC
CAAAACCCAGTCCTCTCGTACTAGGGTCGGCTTCTCGCAGTTCTCTCTAAAACACCAACGGTAGA
TAGGAACCGAACTGTCTCGCGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAAC
CGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTC
CGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCG
Found at i:134760 original size:16 final size:16
Alignment explanation
Indices: 134716--134789 Score: 103
Period size: 16 Copynumber: 4.4 Consensus size: 16
134706 AGTTTTATTC
134716 TTCTATCTATTTTAGTGT
1 TTCT-TCTATTTTAGT-T
*
134734 CTATTTTCTATTTTAGTT
1 -T-TCTTCTATTTTAGTT
134752 TTCTTCTATTTTAGTT
1 TTCTTCTATTTTAGTT
134768 TTCTTCTATTTTAGTT
1 TTCTTCTATTTTAGTT
134784 TTCTTC
1 TTCTTC
134790 CATAAAGAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
16 36 0.69
17 1 0.02
18 1 0.02
19 12 0.23
20 2 0.04
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (16 bp):
TTCTTCTATTTTAGTT
Left flanking sequence: Indices 134216 -- 134715
TCAATAATAGGACATCAATAATAGAATAGGAGTTGCCTTTACTGGTATTCCTACCTACCTATCCT
AAAGAAAGAAAGCGCTTTAGCCATCCTTTCCTTCCTTTCCCCTTCCTTTCCGCTACGCGCCTTCG
CTCCGCGCCGCTCCGCGCCTTTGTCAGGGCCCTTTATCCTGCCCTTTTGGGCCCTTTATCCTGCC
CATTAAGGCGCGGAGCGGCATCCAGGCATACATAGGCGCGTTTTCTTTAGGCTAACCACGTTTTC
GGGGTTTGTTTTCTTTAACCACTTCAATAGAGGGCCTTCTTCTATTTGAGTTTTATTCTTCTATT
TGAGTTTTCTTCTATTCTTAATAAAAGCGCTCCGCCCCTCTCTTTAAAGAAAAGACCTCTCTTTA
AAGCGCTCCGCTAAAGCCTCTCTTTTCTTCGCTTATCTTTAGGTAGGAAAGACCTCTCTTTTCTT
ACCTCTCCGCTTTAGCCTCTCTTTTCTTCTATTTGAGTTTTATTC
Right flanking sequence: Indices 134790 -- 135289
CATAAAGAGTGCATAGGATGGGAATTTTAGTACGAGTAAGCTGAACACCTCGCGGTGCTTACACC
TCTCGCCTATCGAAGTGATGGTCTTTCACCTTGTATGAGAACTTGTATAGAGAAGGATTTCCCGC
TTAGATGCTTTCAGCGGTTCTTCCATACCAACTTAGCTACCCGGCGCTGCTATTGGCATAACAAC
CGGTCCACCATAGGTTGACCCAAAACCCAGTCCTCTCGTACTAGGGTCGGCTTCTCGCAGTTCTC
TCTAAAACACCAACGGTAGATAGGAACCGAACTGTCTCGCGACGTTCTAAACCCAACTCACGTAC
CACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGAC
ATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCCCCGGCG
TACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCG
Found at i:144924 original size:20 final size:20
Alignment explanation
Indices: 144879--144925 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
144869 TTTTTCATAT
*
144879 TTCATCCCTTATATATGATAA
1 TTCAT-CCTTATACATGATAA
* *
144900 CTCATCCTTATACATGATTA
1 TTCATCCTTATACATGATAA
144920 TTCATC
1 TTCATC
144926 AAACTTCGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.43
Consensus pattern (20 bp):
TTCATCCTTATACATGATAA
Left flanking sequence: Indices 144379 -- 144878
ACCAGTGCAAGAAAAGCTGGCACTCATGGACCCTGACGGCCCAGGGGTCGGTAACGACTACAAAT
GAGAGGCATAATATACCTCCCTTAAATAACGGAAGTTCTTCACGCTTATATAGCTGACTTACCTT
ACAGAACCAGTGAAGCCTAGCCAAACCTTGACATTACGGCATAATTCTGCATAAGAACTATCCAA
ATAATTATACCAAGTGCAAAATAAGCTTGAGAAAGCTCTCTGGATATGACCATACAAAGTTTTCA
TACGGTACTCTCCGTGGAATTACTACACAAGTCTTTATCTCTACGAGACTAACGTCTTTGTACCA
AATTCGGGTCTAATGATATTTCGAATGCCTGACTCACGAATTAAACAATTTTATGGCAATCTGTT
TTACCGTAAATAAAAAAGTAGATGCTTTTTCACCCTTTCTATAAGTAACTTTCAGTGTATCCAAT
GAAAAAATTTTTTGTACGCAAACCCAACCTCTTTTTTTTTCATAT
Right flanking sequence: Indices 144926 -- 145425
AAACTTCGTCTCCTCATCACATTGTCTAACGTATCTCTATGAACTTGTACCCAATCCTCCGTGGG
TATCAACTCCGTAAACACATAACAATTGGGTGTCAAGTGAAGTTGACATAACCTTTTCATCAAAA
ACTAAAGCCAAACCCTTTAAATCAGGATCAAGCGTTCTAAGAACGTTTACTATCTCAAAACTCTT
TAATAGTTAAAAATATAAACTTGTATTCGATTGTTTGACGACTTCTATTTCTGATAAAGTTTGTA
TCCATTTCACTGACCCCCCCGAACCCCCAACAACAAAATTTCTCTTCAACCGCCGTGACCGCTCG
ATTTTTGAACTACTACCAAAGCCATAAACATATTTATCAAAATCTGCATTCCCCCCTCCCTTCAA
ACCCAATATTAACCTCCGTACGACCTCTCATTGTAACGGATGAACCTGGACACGAATTGACTCCT
TTCTTTATCTTATTAAAGTCTCGAAATGTTTGCATTTCGGCTAGA
Found at i:146182 original size:32 final size:32
Alignment explanation
Indices: 146141--146205 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
146131 TGTACACAGA
146141 TGATTTCTTCATGTGAGCTATGCCGTATCCCG
1 TGATTTCTTCATGTGAGCTATGCCGTATCCCG
146173 TGATTTCTTCATGTGAGCTATGCCGTATCCCG
1 TGATTTCTTCATGTGAGCTATGCCGTATCCCG
146205 T
1 T
146206 TCGCAGTTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (32 bp):
TGATTTCTTCATGTGAGCTATGCCGTATCCCG
Left flanking sequence: Indices 145641 -- 146140
AAACTCCGGTTCCTATCTTTGACCCTCTTTTTATCTTTAGCATTCAATCCCTGGACACATTATTC
TCCCTGTCAAACACCTACGAAATACTTACCATACTTGGAAAGTTTACTATTGGAATCATTCCGAA
CATATTCTGAAGCGAGACTCCCGAAAACTTCTAATATATTTTTCATGGGTCTATCGTTGCACCAA
TCGGCTTCGTTATCCTCCCAAGTTACTTTACTGTAATCTGTTGGCTTATCATGGGCCTCCTCGAA
TTGACTACTGAAATCTTTAACCTTATTAATACTATAACAATATGCGTTGGTTACAATCTCCTCAG
CTAAATCTTTATAAATTAAGGGTTTTGAAGAAGACTTCAAATTTGAATACATGAATTTAGGTGGA
TAAACCGGAGTATAATCCGAAAGGTTTGATTCATAGATATATTTCTCAAAACCTTTAAACCCCAG
CAGCCTGCATCTGAATCCTGAATTTTATTTGCAAGTGTACACAGA
Right flanking sequence: Indices 146206 -- 146705
TCGCAGTTCCAGTGAGCCGTTGGCTGTAAGCTGCAAGCATACAGCAGCCGCGAGCGCATAACCTC
CTCGCGGGAAGCAAAAGCCCCAATAATAAACATAGGCTATAGTAAAGGGCCCGCGTCGGGGGAGG
CACCGAAGGAGGTGCCTTTACAACTCGGATGTAGTAAATCAATTATTTCATGGAATAATAATAAT
AATAGTAATATACAAAAGCATATATGGAGAAAACACAGCTTAATAATAGAAGATACGTATATAAT
AAAAAAACCATAGATAGAGTGTCACTACTAATAAATGAATTTAGTAGTTACTTTTCATTATTTAG
AATAAATAAACGCGTTGGAATTTTTAATGGGGGGATCGTAGTCTCCGTGCGCGTGAATCTACGAG
CCATTTCCGGCCGTATCGGCTGGCGCGTGCGGAAAAGCCATTTCAGGTCTATTACAAAGGACCCT
TCCTTCCTCCGTAAACCCAAAAAAGTATCCTTCCTTTGGACCCTT
Found at i:150292 original size:23 final size:24
Alignment explanation
Indices: 150254--150298 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
150244 TGTCAGTTTC
*
150254 TTCATTTTTTTCTCAGTTTTTCCT
1 TTCAGTTTTTTCTCAGTTTTTCCT
150278 TTCAGTTTTTT-TCAGTTTTTC
1 TTCAGTTTTTTCTCAGTTTTTC
150299 AGAGAATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.09, C:0.18, G:0.07, T:0.67
Consensus pattern (24 bp):
TTCAGTTTTTTCTCAGTTTTTCCT
Left flanking sequence: Indices 149754 -- 150253
TAAGTGATATTTGGACGCGTATACAAACTGCCGAAATTACTAAATCCAAAGTTTGGGTATAGCAG
GACTCGAACCTGCGACCTTTAAGTTAAAAGCCTATTGCTCTACCAACTGAGCTATACACCCGGAG
ATTTTTGATTATGACAATTTCAATTCCTTAATTGGACAACAAATTCGTGGAAAACAACTCTGACC
TAAAATGCGAGCCATGAACAGAGCGTATAGCGATTCATCCACCGCGTAGCGAGAAATAAAACAAT
AGATATATTTTTTTCTTTCCGCATTTTGGAACTGTAAAACAGAAAAACCGGGATAAGCCAGAGAA
CGAAGTGGAGAGAGCCACCAGATATTTGGTCACAGCTATCTCTTGCCCGCTTTACCAATCGAAAA
AGTGGGCAAGAGCTTAGGGTCCGAACGAGTAGATTCCCGCGCATTTCGCCGGCTGGTTCTCCGTA
ATGCAGTTCTTCCTCAGCCATTTCGGCTCGTGTCCTGTCAGTTTC
Right flanking sequence: Indices 150299 -- 150798
AGAGAATGAAAAAAAATAGATATATATTTTTTTTTAGTGCTGTGTGGACAATGACTATACGACGC
AGGCCTCCAGCCTCTTGGTCGCAGCGCTATGCGCTTCTATTGTTTTCCCCCCCCCGAACCCCCCC
CCTTTTACCCCTTCCCCTCTCCCTACGGCCTTCATTCGCTTCTCCTAAAAACAATATTGTAGCAA
AGTTCGGCGGAATAACCTTCAACACACCCAGCTGCCAAGCCGCGGGTGGTTCGTAATGGACTACT
ATGTAAATCCAGCGCGAAACGTTATACGCATCCTTGTAACGTCTTTCAGCCCAACGTTCATTACT
TTGGTCTTATGCAATATGGGCTTAGTAGGACTCGAACCTACAATATCACCGTTATGAGCGGTGCG
TTCGAACCAATTAAACTATAAGCCCTGGATTCGCTATGCTCACTAACATAGCAAATTAAGCCCAC
CCGCTTCGGAAGCTATGTAGAGTAGAGAACCAAACGAAAAAGAGG
Done.