Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_010303
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 414903
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
File 2 of 2
Found at i:269233 original size:18 final size:18
Alignment explanation
Indices: 269234--269293 Score: 93
Period size: 18 Copynumber: 3.3 Consensus size: 18
269224 TTCATCAATA
*
269234 CAATATGGGAATCTTCAT
1 CAATAGGGGAATCTTCAT
*
269252 CAATAGGGGAATCCTCAT
1 CAATAGGGGAATCTTCAT
*
269270 CAATAGGGGAATCCTCAT
1 CAATAGGGGAATCTTCAT
269288 CAATAG
1 CAATAG
269294 AATATGGGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (18 bp):
CAATAGGGGAATCTTCAT
Left flanking sequence: Indices 268734 -- 269233
AAATCAATCAGTGGTGTAACAATCCTATCTTAATTGGTTACATATCAATGAAATGATACGGAAAT
CGGGGCCGGAGCGAAATGAAGAGGAAAGACGGGTCTTATTCATTGATCGAATAGGGCTTCGCCCT
CTTTGCTTTAGGGGGGTGAAGGAAAGTAACCTTGTTTTTGGGGAGAGAGGAGCCACTATTTGGTT
AAGTTGGCGGCTGCCCCCAACTCACTTTGGTGCAAAAATCCGTAGAATGATAAGGTTGGTGGTTC
AGCCCACTCTATCCCTCACCTTTCCTTTCCGGCTCGGCGGCCCCCGGATTATGAATATCTATCAC
ACCTTGTTCCATTTCCCACAGCAACAAGCGATTGTCAATGGAGGTATGGCTGAGTGGCTTAAGGC
ATTGGTTTGCTAAATCAACATACAATGATATTGTATCATGGGTTCGAATCCCATTTCCTCCGGAT
ACTCTATGAATCACGTATTCATAAATATGGGAATCTTCATCAATA
Right flanking sequence: Indices 269294 -- 269793
AATATGGGAATATTCATAAATCAATCAATCAGACTATTCAATCAGTCAACCCACTGATCGAATCC
TATTGATTCTTATTAATTGGAAGCTGATCTTCTTCTTTATTGGATCTTAATCAATGTGAATATGT
GAATAGCCATAGCGATTAGATCCTTGATCCTAATCAATTCAATAAAAGGCACAGTGACAGTGATC
AGGCCCTGATCCTGATTCATAGGAACTCGATTCTTTAAGGATCCGATCTTGGATCTAATCAATGC
TCCTACAATCTAGATTGCTCGGATCGTTCTCTATCTTAGAATAGGATATGGCCACTCTATTAAGA
GATTCTCTCTATTTCGATTTTGATTTGTCTTCCTACGGCCTTTATAGAAATCAATCAGACTATTC
AATCAGTCAACCACTGATTGAATCTCCTATTGATTTGATTGATTGGAAACAACCTTACAGGCTCT
ATATCTATATAATTCAATCAGACTCTTAAATCTCCAGTGAACCCA
Found at i:269304 original size:23 final size:23
Alignment explanation
Indices: 269212--269256 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
269202 CGTATTCATA
269212 AATATGGGAATCTTCATCAATAC
1 AATATGGGAATCTTCATCAATAC
269235 AATATGGGAATCTTCATCAATA
1 AATATGGGAATCTTCATCAATA
269257 GGGGAATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (23 bp):
AATATGGGAATCTTCATCAATAC
Left flanking sequence: Indices 268712 -- 269211
AAGGGAAGGGAAAGGTTAGTCAAAATCAATCAGTGGTGTAACAATCCTATCTTAATTGGTTACAT
ATCAATGAAATGATACGGAAATCGGGGCCGGAGCGAAATGAAGAGGAAAGACGGGTCTTATTCAT
TGATCGAATAGGGCTTCGCCCTCTTTGCTTTAGGGGGGTGAAGGAAAGTAACCTTGTTTTTGGGG
AGAGAGGAGCCACTATTTGGTTAAGTTGGCGGCTGCCCCCAACTCACTTTGGTGCAAAAATCCGT
AGAATGATAAGGTTGGTGGTTCAGCCCACTCTATCCCTCACCTTTCCTTTCCGGCTCGGCGGCCC
CCGGATTATGAATATCTATCACACCTTGTTCCATTTCCCACAGCAACAAGCGATTGTCAATGGAG
GTATGGCTGAGTGGCTTAAGGCATTGGTTTGCTAAATCAACATACAATGATATTGTATCATGGGT
TCGAATCCCATTTCCTCCGGATACTCTATGAATCACGTATTCATA
Right flanking sequence: Indices 269257 -- 269756
GGGGAATCCTCATCAATAGGGGAATCCTCATCAATAGAATATGGGAATATTCATAAATCAATCAA
TCAGACTATTCAATCAGTCAACCCACTGATCGAATCCTATTGATTCTTATTAATTGGAAGCTGAT
CTTCTTCTTTATTGGATCTTAATCAATGTGAATATGTGAATAGCCATAGCGATTAGATCCTTGAT
CCTAATCAATTCAATAAAAGGCACAGTGACAGTGATCAGGCCCTGATCCTGATTCATAGGAACTC
GATTCTTTAAGGATCCGATCTTGGATCTAATCAATGCTCCTACAATCTAGATTGCTCGGATCGTT
CTCTATCTTAGAATAGGATATGGCCACTCTATTAAGAGATTCTCTCTATTTCGATTTTGATTTGT
CTTCCTACGGCCTTTATAGAAATCAATCAGACTATTCAATCAGTCAACCACTGATTGAATCTCCT
ATTGATTTGATTGATTGGAAACAACCTTACAGGCTCTATATCTAT
Found at i:271359 original size:20 final size:19
Alignment explanation
Indices: 271310--271360 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
271300 AATCAAATAC
*
271310 AGTCTGATTGAGTATAGAG
1 AGTCTGATTGAGTATAAAG
* *
271329 A-TCTCATTGAGTCTCAAAG
1 AGTCTGATTGAGTAT-AAAG
271348 AGTCTGATTGAGT
1 AGTCTGATTGAGT
271361 TGGAGAAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 11 0.42
19 5 0.19
20 10 0.38
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (19 bp):
AGTCTGATTGAGTATAAAG
Left flanking sequence: Indices 270810 -- 271309
TCTTTCTACACGTGATACAACCAAAGAGCCCACAACAGAGTCGTATCTACCTAATCAGCGGCTAA
ACAGGAGGGCCGCTGAGTCGATACGGTCTGGGCCCGCCTACTATTGTAAGGATCTTTTGGTCTTA
TACACGAAGATCTGTTAGAACCGTGACTCACCCGATCAAGCCGGGATCTAGTCCGTATCTCCCTA
ATCATCGGCCTGGTGGGCCGCTGATTAGTTCGATACGGTCTAGACCCGCTCTCAGTCTATTTCGG
GCCACGTCTGTTTGTTAGAAAAGATCTAACTCATTCGAGAGTCTATGATGCTGTAACAGTATTAT
TGTATGTCTAATCGAATCCTAGTAGATTCGATATTGATAGTGTCATCTTCGATTCAAACACGGCA
CCAGGCACCAGACAAAAGTCTTGATTGAATTTAGAGATCTCAAATTCAGAAGACGCCTTGATTGA
ATCTCATTGAGTCTTGATTCAATGCAGAGGATAAGAATCAAATAC
Right flanking sequence: Indices 271361 -- 271860
TGGAGAAGATTCGATTCAGAGATAGGATGAAATTCAGAGCCTAAGAATCAATTTCAGTTTGATTG
GGTATAGAGATCCGATTGAGTCTCAAAGAGTCTGATTGAGTTGGAGAAGATTCGATTCAGAGGGA
TAATATTCAATTCAGAGGCTAAGAATCAAATACAGCCTGATTGAGTATAGAGATCTGATTGAGTC
TGAGAAGTTCCGTCTGATTGAGTTTGAGTCTTGAAGGATAAAAGCAATATGCCTTCGATGCGCTC
GGGGAATCTCTCTTCAGAATGTGTTCCGAGTTCTCGTCCTATCCCTTCCCGTAAGTCCCTTGGAT
AGTGGTAGTAGCACTCGCATCGCCCTGAATTGTTCCCCAATAATGAATAAGTCTCCTCTTTCTCC
ATTCAGGGGGGGGGGACAGAACGGGGACGGCAAGCCGGCCGAGGACGGGAAGCAGCCGGGCGGGC
AGGTAAGAAGCACAATATCGGTCGGCCCGTTGGTTCATTATTTCA
Found at i:271474 original size:106 final size:107
Alignment explanation
Indices: 271296--271556 Score: 391
Period size: 106 Copynumber: 2.4 Consensus size: 107
271286 ATGCAGAGGA
271296 TAAGAATCAAATACAGTCTGATTGAGTATAGAGATCTC-ATTGAGTCTCAAAGAGTCTGATTGAG
1 TAAGAATCAAATACAGTCTGATTGAGTATAGAGATC-CGATTGAGTCTCAAAGAGTCTGATTGAG
*
271360 TTGGAGAAGATTCGATTCAGA-GATAGGATGAAATTCAGAGCC
65 TTGGAGAAGATTCGATTCAGAGGATAAGATGAAATTCAGAGCC
* * * *
271402 TAAGAATCAATTTCAGTTTGATTGGGTATAGAGATCCGATTGAGTCTCAAAGAGTCTGATTGAGT
1 TAAGAATCAAATACAGTCTGATTGAGTATAGAGATCCGATTGAGTCTCAAAGAGTCTGATTGAGT
* ** *
271467 TGGAGAAGATTCGATTCAGAGGGATAATATTCAATTCAGAGGC
66 TGGAGAAGATTCGATTCAGA-GGATAAGATGAAATTCAGAGCC
* *
271510 TAAGAATCAAATACAGCCTGATTGAGTATAGAGATCTGATTGAGTCT
1 TAAGAATCAAATACAGTCTGATTGAGTATAGAGATCCGATTGAGTCT
271557 GAGAAGTTCC
Statistics
Matches: 137, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
105 1 0.01
106 79 0.58
108 57 0.42
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (107 bp):
TAAGAATCAAATACAGTCTGATTGAGTATAGAGATCCGATTGAGTCTCAAAGAGTCTGATTGAGT
TGGAGAAGATTCGATTCAGAGGATAAGATGAAATTCAGAGCC
Left flanking sequence: Indices 270796 -- 271295
CTGTCACTGTCTTTTCTTTCTACACGTGATACAACCAAAGAGCCCACAACAGAGTCGTATCTACC
TAATCAGCGGCTAAACAGGAGGGCCGCTGAGTCGATACGGTCTGGGCCCGCCTACTATTGTAAGG
ATCTTTTGGTCTTATACACGAAGATCTGTTAGAACCGTGACTCACCCGATCAAGCCGGGATCTAG
TCCGTATCTCCCTAATCATCGGCCTGGTGGGCCGCTGATTAGTTCGATACGGTCTAGACCCGCTC
TCAGTCTATTTCGGGCCACGTCTGTTTGTTAGAAAAGATCTAACTCATTCGAGAGTCTATGATGC
TGTAACAGTATTATTGTATGTCTAATCGAATCCTAGTAGATTCGATATTGATAGTGTCATCTTCG
ATTCAAACACGGCACCAGGCACCAGACAAAAGTCTTGATTGAATTTAGAGATCTCAAATTCAGAA
GACGCCTTGATTGAATCTCATTGAGTCTTGATTCAATGCAGAGGA
Right flanking sequence: Indices 271557 -- 272056
GAGAAGTTCCGTCTGATTGAGTTTGAGTCTTGAAGGATAAAAGCAATATGCCTTCGATGCGCTCG
GGGAATCTCTCTTCAGAATGTGTTCCGAGTTCTCGTCCTATCCCTTCCCGTAAGTCCCTTGGATA
GTGGTAGTAGCACTCGCATCGCCCTGAATTGTTCCCCAATAATGAATAAGTCTCCTCTTTCTCCA
TTCAGGGGGGGGGGACAGAACGGGGACGGCAAGCCGGCCGAGGACGGGAAGCAGCCGGGCGGGCA
GGTAAGAAGCACAATATCGGTCGGCCCGTTGGTTCATTATTTCAATCACTTTCAATCAATAGGTT
AACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGCG
GGGGTGGCGGCGGGTTTGCCAAGGAGTGTTGAAGCAGAGAGTCATGGCGCTCCTTTTGATAAGGG
CAAGGAAGTGGCTAAGGATGAGGGGGCCTATAGCCGCCTCCGCAT
Found at i:271920 original size:32 final size:32
Alignment explanation
Indices: 271877--271943 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
271867 TTCAATCAAT
271877 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
*
271909 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
271941 AGG
1 AGG
271944 GCGGGGGTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (32 bp):
AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
Left flanking sequence: Indices 271377 -- 271876
CAGAGATAGGATGAAATTCAGAGCCTAAGAATCAATTTCAGTTTGATTGGGTATAGAGATCCGAT
TGAGTCTCAAAGAGTCTGATTGAGTTGGAGAAGATTCGATTCAGAGGGATAATATTCAATTCAGA
GGCTAAGAATCAAATACAGCCTGATTGAGTATAGAGATCTGATTGAGTCTGAGAAGTTCCGTCTG
ATTGAGTTTGAGTCTTGAAGGATAAAAGCAATATGCCTTCGATGCGCTCGGGGAATCTCTCTTCA
GAATGTGTTCCGAGTTCTCGTCCTATCCCTTCCCGTAAGTCCCTTGGATAGTGGTAGTAGCACTC
GCATCGCCCTGAATTGTTCCCCAATAATGAATAAGTCTCCTCTTTCTCCATTCAGGGGGGGGGGA
CAGAACGGGGACGGCAAGCCGGCCGAGGACGGGAAGCAGCCGGGCGGGCAGGTAAGAAGCACAAT
ATCGGTCGGCCCGTTGGTTCATTATTTCAATCACTTTCAATCAAT
Right flanking sequence: Indices 271944 -- 272443
GCGGGGGTGGCGGCGGGTTTGCCAAGGAGTGTTGAAGCAGAGAGTCATGGCGCTCCTTTTGATAA
GGGCAAGGAAGTGGCTAAGGATGAGGGGGCCTATAGCCGCCTCCGCATGGGCAGTCTTGTCCAAC
AGCGAACCAATGCCTTTAGCGGGAGCACCGCTAAGGAGTGTGAACTCTCGTGGATGTCCGGGTGG
GTCAACGGGAGGCCGGTCCAGATGTGGATTTCTCTGGGCGCCACGTTGGGAGAAATAGGCATGAC
CCCAGAGAGAGCTAATGAGCCGGCCCTGAATGAATGGATAAAGGAGCAGGGCGAGCGGGGACAGG
TGAAGGCCGTGAAGGGAACGGAGAGCGAGACACAGGAAGTGGCAATTACAGAAATAGAAAGGGTT
CGGTTGTTGGTTAACGGCTACGGTATCGATTTAGAGTCTATAAAGGCGGCTAGGTCTCTTCGTGT
AGCTCGAATCTTGTCCATAGCGGGAATGGAATAGACTCTTGGGAA
Found at i:278066 original size:32 final size:32
Alignment explanation
Indices: 278030--278128 Score: 189
Period size: 32 Copynumber: 3.1 Consensus size: 32
278020 GATGACCTTG
278030 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
278062 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
278094 CCTTCCCTTCGCTACGCTCAGGAAAGGTATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
278126 CCT
1 CCT
278129 GAATTGGCTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 277530 -- 278029
ATCAGGCCCCTTGGCTTTGGTTCTTGCGGTTTTTGCCCTCTTTAGGATTTCCGATAAGGTCTCTC
CCCAGCAAAGAGGATTTTTATCCTCCTTTGTGCCATATTCACAGATTGTGTTCCATCCTTTATGG
AACTTGACATTGCATTGGGAGCCCTCGAACTCTTTAAAGGTAGATCTAATCCTATTTGTGGCTGT
GTGCCTGCTGGCGCTTGTATTCCATATTCCAATATGGTAATGATATCCGCCCTGGGAGTGCCTTT
CTTTAGTAACAAAGACACTCTCGCAATCAAATAAGGTTATAACCCTTTGTAAAACATCTTCCCGA
GAGATCTTGTGCTTCTCTGCATGGCAGTGACCAATAAGGATTTTCGCTTGCAGGATTCGCTTAGC
AAACGACCCTTGTTGGGGGGTCCATTAGGTTCTTTTCCATCCGAATCAGTTTCACTCTTGGGAAC
GACTATCTCTTTAGATTCATTATCGCTTTCGTAGTGATGACCTTG
Right flanking sequence: Indices 278129 -- 278628
GAATTGGCTTTCTCTTTAATTTCAGTAATTCTTTTCTTCTTCTTAACCGAAACCTCTTCCTCCAC
ACTATCAACTCGTCTTTCCCGCTCTATAGCCTTAGCCTTCAGTTTCTAATTATTCTTAATATTCT
TTCCATGAAAGAGACGTGGCATCTGTTCATAAAGAATAGTGGTGAATCTATGTGCTGGCTGCTTG
TCTGAATATTCTTACTGGCGATTTATTCTTTTATTTGAGCGGGTGGTAGGGTATCGCCAGCCAGG
CAGATTTTAAATATCCATTAGGTTGTTAAAAGTTGTGCAGACTCTTCCAGTTAGGTGAATTTAAT
TGAACATTAAAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGT
AGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTA
GCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGA
Found at i:278505 original size:32 final size:32
Alignment explanation
Indices: 278464--278627 Score: 328
Period size: 32 Copynumber: 5.1 Consensus size: 32
278454 TGAACATTAA
278464 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
278496 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
278528 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
278560 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
278592 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
278624 AAGG
1 AAGG
278628 AGCGGCGGGC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 132 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (32 bp):
AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
Left flanking sequence: Indices 277964 -- 278463
ATCAGTTTCACTCTTGGGAACGACTATCTCTTTAGATTCATTATCGCTTTCGTAGTGATGACCTT
GCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
CCTTCCCTTCGCTACGCTCAGGAAAGGTATAACCTGAATTGGCTTTCTCTTTAATTTCAGTAATT
CTTTTCTTCTTCTTAACCGAAACCTCTTCCTCCACACTATCAACTCGTCTTTCCCGCTCTATAGC
CTTAGCCTTCAGTTTCTAATTATTCTTAATATTCTTTCCATGAAAGAGACGTGGCATCTGTTCAT
AAAGAATAGTGGTGAATCTATGTGCTGGCTGCTTGTCTGAATATTCTTACTGGCGATTTATTCTT
TTATTTGAGCGGGTGGTAGGGTATCGCCAGCCAGGCAGATTTTAAATATCCATTAGGTTGTTAAA
AGTTGTGCAGACTCTTCCAGTTAGGTGAATTTAATTGAACATTAA
Right flanking sequence: Indices 278628 -- 279127
AGCGGCGGGCGGATTGGGTAATATCAAAAGATCCGTCGCGCGGCCACAAGTCCATACAGATACAG
GTGAAATAGCGGATCGGGAACATTAAAATATCTGTCCGTCGTGCTGCCACAAGTCTACACAGGCA
CGGGTGAAATAGCGGCGGAACTTATATTGAACATCAAAGGTTATACCTTTCCTGAGCGTAGCGAA
GGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGATCCGCCGCCCACGTTAGCGAGCCTT
ACAGATGCGCCCGCGAGCCTTACCGCGTTAGCGAGCCTTACAGATGAAAGACCGCATTAGTGAGC
TTTACAGATGAAATGGCGGGCGCGGGTTAACCCTTTACTTCGCGTAGCGAAGGGAAGGAACGGAT
CAGCCGCCCTTCCCTTCGCTACGCTCAGTAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAG
GTATAACCTTATCAAATCAATAGAGAAAGGACCCCTTCGTATTTC
Found at i:278839 original size:32 final size:32
Alignment explanation
Indices: 278794--278861 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
278784 TTGAACATCA
278794 AAGGTTATACCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATACCTTTCCTGAGCGTAGCGAAGGG
*
278826 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATACCTTTCCTGAGCGTAGCGAAGGG
278858 AAGG
1 AAGG
278862 ATCCGCCGCC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (32 bp):
AAGGTTATACCTTTCCTGAGCGTAGCGAAGGG
Left flanking sequence: Indices 278294 -- 278793
ATAGTGGTGAATCTATGTGCTGGCTGCTTGTCTGAATATTCTTACTGGCGATTTATTCTTTTATT
TGAGCGGGTGGTAGGGTATCGCCAGCCAGGCAGATTTTAAATATCCATTAGGTTGTTAAAAGTTG
TGCAGACTCTTCCAGTTAGGTGAATTTAATTGAACATTAAAAGGTTATCCCTTTCCTGAGCGTAG
CGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGC
GAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCG
AAGGGAAGGAGCGGCGGGCGGATTGGGTAATATCAAAAGATCCGTCGCGCGGCCACAAGTCCATA
CAGATACAGGTGAAATAGCGGATCGGGAACATTAAAATATCTGTCCGTCGTGCTGCCACAAGTCT
ACACAGGCACGGGTGAAATAGCGGCGGAACTTATATTGAACATCA
Right flanking sequence: Indices 278862 -- 279361
ATCCGCCGCCCACGTTAGCGAGCCTTACAGATGCGCCCGCGAGCCTTACCGCGTTAGCGAGCCTT
ACAGATGAAAGACCGCATTAGTGAGCTTTACAGATGAAATGGCGGGCGCGGGTTAACCCTTTACT
TCGCGTAGCGAAGGGAAGGAACGGATCAGCCGCCCTTCCCTTCGCTACGCTCAGTAAAGGGATAA
CCTTCCCTTCGCTACGCTCAGGAAAGGTATAACCTTATCAAATCAATAGAGAAAGGACCCCTTCG
TATTTCAGGGCTTCGCCCCTTAAATATCACAACCGGATAGGCCGCTGATGTGATGAGGAACCAGC
AGCGTTGCGGGTGCTTTATTGAAGATTAGTGAGAGGGGTCCACTATTTGGTTACGGAATGAAGAG
ATTTGGTCGCTGCCATACTTGTCGAGAAGGCTTTGGCTTGAACTGGAACGCGTACCTTTCCTTCG
TTCGTTCGAGGCTGAGGCCCGATCGTTGCGGGAGGAGAGGCAGTC
Found at i:278952 original size:29 final size:29
Alignment explanation
Indices: 278909--278965 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
278899 CGCGAGCCTT
*
278909 ACCGCGTTAGCGAGCCTTACAGATGAAAG
1 ACCGCATTAGCGAGCCTTACAGATGAAAG
* *
278938 ACCGCATTAGTGAGCTTTACAGATGAAA
1 ACCGCATTAGCGAGCCTTACAGATGAAA
278966 TGGCGGGCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (29 bp):
ACCGCATTAGCGAGCCTTACAGATGAAAG
Left flanking sequence: Indices 278409 -- 278908
GGTTGTTAAAAGTTGTGCAGACTCTTCCAGTTAGGTGAATTTAATTGAACATTAAAAGGTTATCC
CTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCC
TTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
TTCCTGAGCGTAGCGAAGGGAAGGAGCGGCGGGCGGATTGGGTAATATCAAAAGATCCGTCGCGC
GGCCACAAGTCCATACAGATACAGGTGAAATAGCGGATCGGGAACATTAAAATATCTGTCCGTCG
TGCTGCCACAAGTCTACACAGGCACGGGTGAAATAGCGGCGGAACTTATATTGAACATCAAAGGT
TATACCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAT
CCGCCGCCCACGTTAGCGAGCCTTACAGATGCGCCCGCGAGCCTT
Right flanking sequence: Indices 278966 -- 279465
TGGCGGGCGCGGGTTAACCCTTTACTTCGCGTAGCGAAGGGAAGGAACGGATCAGCCGCCCTTCC
CTTCGCTACGCTCAGTAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGTATAACCTTATC
AAATCAATAGAGAAAGGACCCCTTCGTATTTCAGGGCTTCGCCCCTTAAATATCACAACCGGATA
GGCCGCTGATGTGATGAGGAACCAGCAGCGTTGCGGGTGCTTTATTGAAGATTAGTGAGAGGGGT
CCACTATTTGGTTACGGAATGAAGAGATTTGGTCGCTGCCATACTTGTCGAGAAGGCTTTGGCTT
GAACTGGAACGCGTACCTTTCCTTCGTTCGTTCGAGGCTGAGGCCCGATCGTTGCGGGAGGAGAG
GCAGTCGCATTGATGGAAGTGTTACATATAAGTCGAGTGTCCCCTATTCATTTCTCTCTTCTTTA
TTCAAAGGCGTGTCACCATCGCATTTAATAAGTGATAGGGATTGA
Found at i:279066 original size:32 final size:32
Alignment explanation
Indices: 279025--279092 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
279015 GATCAGCCGC
*
279025 CCTTCCCTTCGCTACGCTCAGTAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
279057 CCTTCCCTTCGCTACGCTCAGGAAAGGTATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
279089 CCTT
1 CCTT
279093 ATCAAATCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 278525 -- 279024
GGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAG
GGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAGCGGCGGGCGGATTGGGTAATATCAA
AAGATCCGTCGCGCGGCCACAAGTCCATACAGATACAGGTGAAATAGCGGATCGGGAACATTAAA
ATATCTGTCCGTCGTGCTGCCACAAGTCTACACAGGCACGGGTGAAATAGCGGCGGAACTTATAT
TGAACATCAAAGGTTATACCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTA
GCGAAGGGAAGGATCCGCCGCCCACGTTAGCGAGCCTTACAGATGCGCCCGCGAGCCTTACCGCG
TTAGCGAGCCTTACAGATGAAAGACCGCATTAGTGAGCTTTACAGATGAAATGGCGGGCGCGGGT
TAACCCTTTACTTCGCGTAGCGAAGGGAAGGAACGGATCAGCCGC
Right flanking sequence: Indices 279093 -- 279592
ATCAAATCAATAGAGAAAGGACCCCTTCGTATTTCAGGGCTTCGCCCCTTAAATATCACAACCGG
ATAGGCCGCTGATGTGATGAGGAACCAGCAGCGTTGCGGGTGCTTTATTGAAGATTAGTGAGAGG
GGTCCACTATTTGGTTACGGAATGAAGAGATTTGGTCGCTGCCATACTTGTCGAGAAGGCTTTGG
CTTGAACTGGAACGCGTACCTTTCCTTCGTTCGTTCGAGGCTGAGGCCCGATCGTTGCGGGAGGA
GAGGCAGTCGCATTGATGGAAGTGTTACATATAAGTCGAGTGTCCCCTATTCATTTCTCTCTTCT
TTATTCAAAGGCGTGTCACCATCGCATTTAATAAGTGATAGGGATTGATAGTGCCTATCTCTTCA
TTTCTTGAACTTAAGGTAATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGCGGGTCGCTGCTATAG
AGAGAGAGAGAGAAAGAAAGAAGTCCGTATTCCCTCCCCCGCGTC
Found at i:282530 original size:32 final size:32
Alignment explanation
Indices: 282494--282894 Score: 802
Period size: 32 Copynumber: 12.5 Consensus size: 32
282484 ACATCCCTCC
282494 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282526 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282558 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282590 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282622 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282654 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282686 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282718 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282750 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282782 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282814 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282846 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
282878 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
282895 GGCCGGCCAA
Statistics
Matches: 369, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 369 1.00
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (32 bp):
GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Left flanking sequence: Indices 281994 -- 282493
ATTCTATAGTTGTAGGCCTGGCCTGAATGCTCCGCCTATACCGTAGGCTCAATGCCATAGCCATG
CCCCGTAGGTTAACCCCGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGC
ACGTGGTGATCCCCCTGTTCCATAGGTCACACGGTATAGGACAACCCTTAGCCAATGGATCCGGC
ACTTGCACTCGGAGGGAGGCCGGGCCTAATCTCTTTTTAATCACATAGTTCTATAGTGCCCTCTT
TAATCACAGAATAGGATTTTACACTACAGTGCATAGTGTTCTCTCTCTTTTTTTAGCTCCTAATA
GAGTGCCCTCTTTAATCACAGAGTTGAAGAATCTAGTTCACCCTCTTTAATCACACAATCTTCAT
AGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCACTAGAGTGT
TCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCACATCCCTCC
Right flanking sequence: Indices 282895 -- 283394
GGCCGGCCAATCTGTGATGGCCTGTATTGCTATACAATAGCCATACAATCTTCAGGGTTATCCCT
TTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCGGGCCCCACCA
CTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGAGCCTTATTCATCAATTCTAGTGGTGGATCTG
GTATAGGCTCGTATCTTTCCCTGTAGTAGATAGGAACCCATCTTAGAACTGATTCTAATATATGG
CGTATCTATCGCTTCTATAGTGATATCCACCCTATCTTCTTTATTCAGGAACATAGTATAACATC
TCACATATTTTGGGATCTTTAGAACATCTATGGCTTACAGTAACAGATCGTAGTTTTTGAATCTT
GAATCTTTCGAATCTATAAAATCTGTGACTATAGAAAAGAGATAGAATCACTGTTTACTCTATAG
ACGGAGCAATCAGGAATAGAGAGCATCTCTTCGATCCAGTGAATC
Found at i:283737 original size:39 final size:39
Alignment explanation
Indices: 283693--283771 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
283683 CCCATCCCTC
*
283693 AATATCATGATTGGGTCGACCAGGCCCGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCCGATCATGAGTGA
283732 AATATCATGATCGGGTCGACCAGGCCCGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCCGATCATGAGTGA
283771 A
1 A
283772 TGGGAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCCGATCATGAGTGA
Left flanking sequence: Indices 283193 -- 283692
CTTTATTCAGGAACATAGTATAACATCTCACATATTTTGGGATCTTTAGAACATCTATGGCTTAC
AGTAACAGATCGTAGTTTTTGAATCTTGAATCTTTCGAATCTATAAAATCTGTGACTATAGAAAA
GAGATAGAATCACTGTTTACTCTATAGACGGAGCAATCAGGAATAGAGAGCATCTCTTCGATCCA
GTGAATCTCAGTCTTTGAATCTATGAGGCATGTCCCCATGTCTTGGGAATTGATTCAAATGATGG
ACAAGGGATAATGTTCAGTGATGGGCTTTGCTATTGATTAGATGCTCTCTATTTCGCGTGCTCTC
TGGGGTCCTAGTCGCAGAAGCAGAAGAGAGAGAGCACGCAGAGAGCATCTAATCATCGGAGCTAT
GGCCGGGACAGTAATGGATTCCATTCGAAGTAACGTAACAGGGTCCAATTCAATTATGCACCACC
CCCCTTTAATAGTGAATAGTTCTTCGAGAAAAGGCCCCATCCCTC
Right flanking sequence: Indices 283772 -- 284271
TGGGAAATCGAAAACGTACATTGCTATTTCAGCTGAAATACCTGGAATAATCATACCACTTCCAC
TAGGAGTAGCCTTTTTAGTGCTGGCTGAACGTAAAGTAATGGCTCCTGTGCAACGTCGAAAGGGT
CCTGATGTAGTTGGATCGTTCGGATTGTTACAACCTTTAGCGGATGGTTCGAAATTGGTTCTGAA
AGAACCTATTTCACCAAGTAGTGCTAATTTATTTCTTTCCAGAATGGCTCCAGTGGTTACATCTA
TGTCAAGTTCGGTTGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATCGCCAGATTCGGAC
ATAGGTATACTTCATCTGTTTGCCATATCTTCGCTAGGTGTTCATGGGATTATTACAGCGGGTTG
GTCTAGTAATTAGGGGGGCGGCCGTTCGGTCGCCTATGATACTAAGGCCAATGGGTCAAAAATTG
GTTTGTGCCGCAGGTGTTGAACGATCTACTCTGCACAGGTGTGGG
Found at i:290244 original size:31 final size:31
Alignment explanation
Indices: 290209--290269 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
290199 GCGAAGGGAA
*
290209 GGCACGAGGTTTGCTATTACGTAGTAAGTAG
1 GGCACGAGGCTTGCTATTACGTAGTAAGTAG
*
290240 GGCACGAGGCTTGCTATTCCGTAGTAAGTA
1 GGCACGAGGCTTGCTATTACGTAGTAAGTA
290270 CCCGCCCCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (31 bp):
GGCACGAGGCTTGCTATTACGTAGTAAGTAG
Left flanking sequence: Indices 289709 -- 290208
ACTTTGATTCATCTATTCAATGGCGGGCGTCGAGGGCCGGCTAATGGACTAGACCACATTATAAA
GGCAATTCATATGATCCACGAGGGCTAGAATCACGGTCTTTCATGAAACACCAACATAGCGATTT
TGAGAGCTATACGTAGAGAGAGATTCACTTGGTGCCGGCAATCTCTTTCTCTATGGCGCACATCA
AGAATCCAAGGCCTCTACCTCTAGGCAAGGGCTCCCTGCTGCACTACTAAATCCATACATTCCTC
CCTACTGCACTAAATTCATACATTCAAGGGCCTCGAATCAATAGATAAAGGAGCAGAAACGGCAT
GCGTGCATTTTATAAGGGCGAGCCACTGATTCCAGTTCAAACAGGGGTTCAGGGATTGACCAACA
AGGCTTCTACCTATCGAGATGCACGAATCAGGATCGAATTGAAACATCAGCTAGCAACAGATTGA
AAGAGAATCTCTAGGTTAACCCTTTCCTTCGCGTAGCGAAGGGAA
Right flanking sequence: Indices 290270 -- 290769
CCCGCCCCGCATAGACGGGGAGATCTGGACTGATCGAACGGATGCTCTGCTGCCTTCCCCCTATC
GAATGAATCAATAAGGGGGAGGGCGACGACCAGCATCAAAAGAGTTTTCCTCTACCAATTCTTAC
TCATCAAGGATCCCCGGCCTTCACAATCACCATAGTCCGGGCCAGGAATAGTGAATGCCGTAATA
GCGAATAGCTTTACCATTGACCCAGCGGGATGAAAACGAAGCAATCTCTCAGCCTATTGGGGCTG
ATGGCAGTTTCATGGATACAGAGAGGAAATGTACAGATGATGGATGGGCGTCTCATTGGAAGAGA
GAGGGAATGAAACGCGGAATAGGGAGCGTGATCACCAAAGAGAATTCCTTCTTTCTCTAAGGTCC
AGCCATAAAGAAGGAATTCATAGGGCAGTGTAGTCCAGAACCAGCCGGATCACCCCTATTAGATC
AATCAATAAATAGATGAAGGAGATACGGCGGCGGCTACCTGAATC
Found at i:292365 original size:99 final size:99
Alignment explanation
Indices: 292194--292441 Score: 426
Period size: 99 Copynumber: 2.5 Consensus size: 99
292184 CATAGTGTTC
*
292194 TCTTGCTTTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACAT
1 TCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACAT
292259 CCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGA
66 CCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGA
292293 TCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACAT
1 TCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACAT
292358 CCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGA
66 CCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGA
** * * *
292392 TCTTGCTCTTTTTAGCTTAATGGTT-CTATAGCCAGATCAAAGTCGAGATC
1 TCTTGCTCTTTTTAGCTCGAT-GTTGTTATAGTCGGATCAAAGTCGAGATC
292442 CAATTAGAGT
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
99 139 0.98
100 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (99 bp):
TCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACAT
CCCTTTCCTGAGCGTAGCGAAGGGAAGGACGGGA
Left flanking sequence: Indices 291694 -- 292193
CAAGGATCGAATGGCTATTCAATATTGAATTGATTCGAATCAAGGATCTAATCGCTATGGCTATT
TAATATTTATCGATTAGAATCCAGGGCCTGATCACTATGGCTAAATCAAAATAGAGAGAGAGGCC
ATCGTGGATACACAAAAAATAGTGCATACAACGTTGACACTATTGTTAGATCCACGATCGGATCC
CTTGACTAACAGTCATGTGATAATATAGAGGTTAAACCTTCCCTGAGCGTAGCGAAGGGAAGGCA
CATCCCATAGTTTTACTCCGCGTAGCGAAGGGAGGGACACCATAGAGATCTCTTTTTAATCACAT
AGTTTTATAGTGCACAGGGTTGAAGAATCTAGTTCACCCTCTTTAATCACACAATCTTCATAGTG
ACCCTTCTTTTATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCCACTAGAGTGTTCTC
TTTCCTCTCTTGTAGTGGCTCAATCTTCTTTTCTTCATAGTGTTC
Right flanking sequence: Indices 292442 -- 292941
CAATTAGAGTGCCCTCGGCCTTTATTAAGAGGATTTCACACTACAGTGTGATCTTGCTTTTCTTA
GCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCTCTTTTTTTAGCTTAATGTTTTTAGT
GTGAGATCTTGTTTTTTATAGTGCATAGTGTTCTCTCTTCTTCAATAATCTATGAAACTTCAAGC
TAAAAAAAAGAGAGAACACTATGCACTATTCATTTCTTCTTAAAAAGGGTTAAGAAGGTTATCCC
ATAGTTTTACTCCGCGTAGCGAAGGGAAGGAATTGGAGTAATTCAAAAAGTGTTTGAGAAACATT
AAGCTAAGAAAAGCAAGATCACACCCGTCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTC
CCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTAC
ACTATAGACGGGGCATGGCCACTGCTAGATCTCTGTTGTAGTAAT
Found at i:292836 original size:32 final size:32
Alignment explanation
Indices: 292795--292886 Score: 184
Period size: 32 Copynumber: 2.9 Consensus size: 32
292785 TCACACCCGT
292795 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
292827 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
292859 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
292887 TTTACCCTAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 292295 -- 292794
TTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCGGCCTGAAGGCACATCC
CTTTCCTGAGCGTAGCGAAGGGAAGGACGGGATCTTGCTCTTTTTAGCTTAATGGTTCTATAGCC
AGATCAAAGTCGAGATCCAATTAGAGTGCCCTCGGCCTTTATTAAGAGGATTTCACACTACAGTG
TGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCTCTCTCTTTTTTT
AGCTTAATGTTTTTAGTGTGAGATCTTGTTTTTTATAGTGCATAGTGTTCTCTCTTCTTCAATAA
TCTATGAAACTTCAAGCTAAAAAAAAGAGAGAACACTATGCACTATTCATTTCTTCTTAAAAAGG
GTTAAGAAGGTTATCCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGAATTGGAGTAATTCAAAA
AGTGTTTGAGAAACATTAAGCTAAGAAAAGCAAGATCACACCCGT
Right flanking sequence: Indices 292887 -- 293386
TTTACCCTACACTATAGACGGGGCATGGCCACTGCTAGATCTCTGTTGTAGTAATCAGGATCAGG
GCCTGATCACTATGGCTATTCACATCCCTTAGGATCAAGGATCTAATCACTATTGAAGATTCTTA
GTATTGATTAAGATCCAAGCCGGTTATAAAGATCAAGCATATATTAGAATCAGGGCCTGATCACT
ATCGCTATGGCTATTGAATCTTTCTTTCTTAGGATCAAGAGCCTGATCACTATGGCTAAATCAAG
ATAGAAGCAATCTATACCATAGGGCCTACAACAGAGATCTAGCACTAATCACATCCCTATGAATT
AGGATGTTCCCTATGCATTAGAATCAGGGCCAGATCACTATCGCTATTCACATATTCACATCGAT
TAGGATCAAGGATCTAATCGCTAATTCATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAA
GATCAAGCATCGATTAGAATCATCACCGGATCGCTATTCAATATT
Found at i:303607 original size:32 final size:32
Alignment explanation
Indices: 303566--303689 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
303556 ACGTGGTAAA
303566 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
303598 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
303630 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
303662 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
303690 GGGGTCCTCT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 303066 -- 303565
AGCTCCCAAAAGGCTTGGTGATTGGAAGAATTCTCATGTGGATTTATGTAATTGTCCCACTCCTC
ACTCTTGGAATCTATCGAACCCATTCTTATGGAGGTGGCAAGGCACAACTAATAGCAAGGCTTCG
ATCCGACCAAGACGGATTGATTCGTTAAGGATATTACGGAGGACACTGTGATGTTCATGAACCCG
TCCCTGGACCAGGAAGAGGTAAAATGTATCATTACGACATGAACCCACTATATCCCACCGCTATG
CAAATGCCTGTGCCTGCGGGACCTCCTAAATGGCATGGGTGGGGCAGATCTAGAAGATCTGTTTG
GTTCTAATCGTTGGTAACATGAAGTTACAACATCTTCCACGAACACTATAATTTGTATAGTAGAA
TTTCCGTCCCTCCATAATAGGGATAGGGCCGGACAAGGACCTAAGCATTAGGGAGCCCGAAGAGA
TCCGCCAACCAACCACCGCCAGTGTCATCTCAATCACGTGGTAAA
Right flanking sequence: Indices 303690 -- 304189
GGGGTCCTCTATTTCGTCACCCCCATTGCTGGTGGGTGATAGGCCACTCCCTGTGTATGGGAGTC
TGCAGCTGAAAGAACCTGTACAGAGTGCATCTGATCGACCGGAGGTCGGTTCCCAAGGAGGAGTT
GATCAGGTATTATCGCTTCTCTCGCGGCTCTCCCACCGACCTCCAGTCCCGGTGCTCACTCGATA
GATCGAGCCTTATTACATAATATAGGATGCCGCCCCTACAGATAGAGATAGATCCTATATGATGC
CGTCGCCACGATAGGATGCGATGGCGGTTTCTCCCGTCCCGTTTCCTTCCCTTCGCTACGCTCAG
GAAAGGGATAATCCTCGTGGGTGGTTCCCCTACTCCAAATCCGGGACCAGATACCGTTCTATACG
ATGCTATCTATCACCGATATGATCATCGATAGATAAGGGAGGAGGGAGGAATGTTCACTCGAGAT
ATCCCTAATCATTACCGTTACGTATTAAGATAGTGCCATCTGGCC
Found at i:304232 original size:31 final size:31
Alignment explanation
Indices: 304194--304299 Score: 92
Period size: 31 Copynumber: 3.4 Consensus size: 31
304184 CTGGCCCCCA
304194 GATCAGCTCCGAAATGTAGTATAGACTCTCG
1 GATCAGCTCCGAAATGTAGTATAGACTCTCG
* * * *
304225 GATCAGCTCC-ACTCAGAT-TCAG-ACAGGCTCCCA
1 GATCAGCTCCGA---A-ATGT-AGTATAGACTCTCG
**
304258 GATCAGCTCTTAAATGTAGTATAGACTCTCG
1 GATCAGCTCCGAAATGTAGTATAGACTCTCG
304289 GATCAGCTCCG
1 GATCAGCTCCG
304300 CTCAGATTCA
Statistics
Matches: 56, Mismatches: 11, Indels: 16
0.67 0.13 0.19
Matches are distributed among these distances:
30 5 0.09
31 28 0.50
33 18 0.32
34 5 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (31 bp):
GATCAGCTCCGAAATGTAGTATAGACTCTCG
Left flanking sequence: Indices 303694 -- 304193
TCCTCTATTTCGTCACCCCCATTGCTGGTGGGTGATAGGCCACTCCCTGTGTATGGGAGTCTGCA
GCTGAAAGAACCTGTACAGAGTGCATCTGATCGACCGGAGGTCGGTTCCCAAGGAGGAGTTGATC
AGGTATTATCGCTTCTCTCGCGGCTCTCCCACCGACCTCCAGTCCCGGTGCTCACTCGATAGATC
GAGCCTTATTACATAATATAGGATGCCGCCCCTACAGATAGAGATAGATCCTATATGATGCCGTC
GCCACGATAGGATGCGATGGCGGTTTCTCCCGTCCCGTTTCCTTCCCTTCGCTACGCTCAGGAAA
GGGATAATCCTCGTGGGTGGTTCCCCTACTCCAAATCCGGGACCAGATACCGTTCTATACGATGC
TATCTATCACCGATATGATCATCGATAGATAAGGGAGGAGGGAGGAATGTTCACTCGAGATATCC
CTAATCATTACCGTTACGTATTAAGATAGTGCCATCTGGCCCCCA
Right flanking sequence: Indices 304300 -- 304799
CTCAGATTCAGACATATATATGATGCCATCGATGTGACTGGGTCCGGAGAACGAGGCAATGGAGG
GTTTCTCCCTTCCCACATAGAAGATGGTGGTTTTTTGTCCTTTCACTCAGAATCTGGATATGTCC
ACTCGATAGATCGAGATACCGTTACATACGATAGTGCCATACGATAGTTATATGGCCCACACCAG
ATCCATCCCGAGTGAAACCCTATCTCTTTCGGGGTAGACTTAATCCGATTCATCATTCAAGGATC
CGACACTATTGATTCATTATTCATACAGATCCGATTAATTAATCAATTCCTCAATAGACTATGAA
ATATCCGATCCATTCATTCTTTTAAGATCTAATCCATTCATGTTGGTGGCTCGGTGGGCTATTCA
TTATCCCGGAAACCTATCCGGTGTTCTTTCTCGGGCGGGTATGGGTGGTCCTGGGTGGGCAATAA
AGAAGAGATGATCACTATGAGAGATTAGGGAAGAATTAATAGATC
Found at i:304291 original size:64 final size:64
Alignment explanation
Indices: 304190--304313 Score: 221
Period size: 64 Copynumber: 1.9 Consensus size: 64
304180 CCATCTGGCC
304190 CCCAGATCAGCTCCGAAATGTAGTATAGACTCTCGGATCAGCTCCACTCAGATTCAGACAGGCT
1 CCCAGATCAGCTCCGAAATGTAGTATAGACTCTCGGATCAGCTCCACTCAGATTCAGACAGGCT
** *
304254 CCCAGATCAGCTCTTAAATGTAGTATAGACTCTCGGATCAGCTCCGCTCAGATTCAGACA
1 CCCAGATCAGCTCCGAAATGTAGTATAGACTCTCGGATCAGCTCCACTCAGATTCAGACA
304314 TATATATGAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (64 bp):
CCCAGATCAGCTCCGAAATGTAGTATAGACTCTCGGATCAGCTCCACTCAGATTCAGACAGGCT
Left flanking sequence: Indices 303690 -- 304189
GGGGTCCTCTATTTCGTCACCCCCATTGCTGGTGGGTGATAGGCCACTCCCTGTGTATGGGAGTC
TGCAGCTGAAAGAACCTGTACAGAGTGCATCTGATCGACCGGAGGTCGGTTCCCAAGGAGGAGTT
GATCAGGTATTATCGCTTCTCTCGCGGCTCTCCCACCGACCTCCAGTCCCGGTGCTCACTCGATA
GATCGAGCCTTATTACATAATATAGGATGCCGCCCCTACAGATAGAGATAGATCCTATATGATGC
CGTCGCCACGATAGGATGCGATGGCGGTTTCTCCCGTCCCGTTTCCTTCCCTTCGCTACGCTCAG
GAAAGGGATAATCCTCGTGGGTGGTTCCCCTACTCCAAATCCGGGACCAGATACCGTTCTATACG
ATGCTATCTATCACCGATATGATCATCGATAGATAAGGGAGGAGGGAGGAATGTTCACTCGAGAT
ATCCCTAATCATTACCGTTACGTATTAAGATAGTGCCATCTGGCC
Right flanking sequence: Indices 304314 -- 304813
TATATATGATGCCATCGATGTGACTGGGTCCGGAGAACGAGGCAATGGAGGGTTTCTCCCTTCCC
ACATAGAAGATGGTGGTTTTTTGTCCTTTCACTCAGAATCTGGATATGTCCACTCGATAGATCGA
GATACCGTTACATACGATAGTGCCATACGATAGTTATATGGCCCACACCAGATCCATCCCGAGTG
AAACCCTATCTCTTTCGGGGTAGACTTAATCCGATTCATCATTCAAGGATCCGACACTATTGATT
CATTATTCATACAGATCCGATTAATTAATCAATTCCTCAATAGACTATGAAATATCCGATCCATT
CATTCTTTTAAGATCTAATCCATTCATGTTGGTGGCTCGGTGGGCTATTCATTATCCCGGAAACC
TATCCGGTGTTCTTTCTCGGGCGGGTATGGGTGGTCCTGGGTGGGCAATAAAGAAGAGATGATCA
CTATGAGAGATTAGGGAAGAATTAATAGATCACCGGATTAGGATA
Found at i:304945 original size:18 final size:18
Alignment explanation
Indices: 304922--304957 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
304912 GAACTATTAC
*
304922 GATCTATATCTTACCCAT
1 GATCTATATATTACCCAT
*
304940 GATCTATCTATTACCCAT
1 GATCTATATATTACCCAT
304958 CTACCGATCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.39
Consensus pattern (18 bp):
GATCTATATATTACCCAT
Left flanking sequence: Indices 304422 -- 304921
ATATGTCCACTCGATAGATCGAGATACCGTTACATACGATAGTGCCATACGATAGTTATATGGCC
CACACCAGATCCATCCCGAGTGAAACCCTATCTCTTTCGGGGTAGACTTAATCCGATTCATCATT
CAAGGATCCGACACTATTGATTCATTATTCATACAGATCCGATTAATTAATCAATTCCTCAATAG
ACTATGAAATATCCGATCCATTCATTCTTTTAAGATCTAATCCATTCATGTTGGTGGCTCGGTGG
GCTATTCATTATCCCGGAAACCTATCCGGTGTTCTTTCTCGGGCGGGTATGGGTGGTCCTGGGTG
GGCAATAAAGAAGAGATGATCACTATGAGAGATTAGGGAAGAATTAATAGATCACCGGATTAGGA
TAGGAGGAGATCCGGCTACTATTGGGTTGGGAGGTGAGAGATTAGGGAACCTCCAATGATCTGAT
CGGGAAAGAATGAAAGAGTCTTGATCGATACAATCGAACTATTAC
Right flanking sequence: Indices 304958 -- 305457
CTACCGATCTATATCCAATTGATCCCAACTCAAAAACTTGATCTCAACGGCTCAGAAACCCGGGA
AAAATCATTGATCGATAGTGATTCGAGTGAAAACCAGTAGTTATCTCTCTCTATCCACCGATTCA
TAAACCAAAATCATTGATCGATGAGATATACCTATTGCACTATATATGGATATATCTCTTACCCA
TCCATAGATCTATATCCAATTGACCTCAGCTCGAGAACCCGGTTCAAAGAATTGCTCAAGGTTAT
CCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTCCCGATTGAAAAACCCTATATATTCCGG
GCAACCCAAGAGATTCTTGGGGCATAAGCTATAAGAATCTTCGGGTTTAGCCCCCGAATCCATCC
AACAGTAGTATGGGCTCAACATCAAATCGCCGCATTTAATTATCGCTCTCCTACCTTTCTTATTA
ATGATTAAGAAGCGTTGAGAAAACGTCCGGAATCCCATTCTTATA
Found at i:307585 original size:16 final size:18
Alignment explanation
Indices: 307541--307589 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 18
307531 AAAATGAGAG
307541 GCTCTGGATAGATTGAGTTA
1 GCTCTGGATAGATT-AG-TA
*
307561 GCTCCGGATAGATT-G-A
1 GCTCTGGATAGATTAGTA
307577 GCTCTGGATAGAT
1 GCTCTGGATAGAT
307590 ATGGAGGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.48
18 1 0.04
20 13 0.48
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (18 bp):
GCTCTGGATAGATTAGTA
Left flanking sequence: Indices 307041 -- 307540
CCGGAATATAGGCCTATACCTTAAAGCTGGGGGCCTCGGAACAGATAAAGCAGAAGTTTCAGTCA
CAATAACTCTATCTCTTTGTTCCTCCCCCAACTCTATCGGAATACGGATGAGATCAAAAACGCCA
TCATTGAGGCAAACAATGCAATAGCTTCGGTTAAAGCAAACCCCGAAATGGCATGACCAAATGAT
TGTTTAGCCAATGATGGATTTCGCGCCACGGGATGGATCGAGGAACTAAGGACGTTTCCAATACC
GACAGCAGCTCCCGCTGAAGCAATTGTAGCTGCTCCGGCACCTATTAATTTTGCACCTTCCGACA
TATCGAGAAGTTTTTGTCTCGTTAGTTCCCGCTTCTCCCTCGGATCTATTTACTTATTTGGATTT
TTCGTTGATTTCCGTCGACGTTCCTTTCAGAAATACCTGAACAGGCATACTCTCGAGATCGGGAG
AAAATGAGAGGGAAATAGGAACATAGTACCTGGAGAAAATGAGAG
Right flanking sequence: Indices 307590 -- 308089
ATGGAGGAATAAGGGGAAGGGGCAGGTCTTCTACAGGTTTGCATGGGCTGCGGTCACTGGCGGTG
AAGGGGGGGGGGGGGGCGGCTGATGAGATCCGACCGATCCGCTCGTAGATGCGACATGTTAGTGA
AAGCTACTGTAGTATCCCCCACGCTACGGCACGGTTTTGGGTTCGGCCCCTTCGGGTAGTATGAA
TCTTGTTCCATTTCAAAACCTATGACCACCTTCACTAAACAAAATAGTGACTCATCTCGTCGAAA
ATCAATAGTCGTATCTGGAGCCGGGCCCAGGGAGCGTTGCTGGGCGCCGGCGTTCTCAATACGAG
CCTCATACAAAGCCCGTTCGCAGCCGGGGAGAATAAGGGGCCCTCTTTTCATGTCCCGCACCTCT
TTCTTATTTAGAGCAACGCGGAGGCAACTACTTTGCCCCTATTGAAAAAAAGAAAGAGATGGCAC
TTATACTATTGAAAAAGAAAGAGATGGCACTAAAAAACATATTGA
Found at i:310974 original size:18 final size:18
Alignment explanation
Indices: 310947--311011 Score: 96
Period size: 18 Copynumber: 3.6 Consensus size: 18
310937 GGGGGGGGTG
310947 TTCATCAATATGGGAATC
1 TTCATCAATATGGGAATC
*
310965 TTCATAAATA-GGAGAATC
1 TTCATCAATATGG-GAATC
310983 TTCATCAATATGGGAATC
1 TTCATCAATATGGGAATC
*
311001 TTAATCAATAT
1 TTCATCAATAT
311012 AGAATCTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 2 0.05
18 38 0.90
19 2 0.05
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
TTCATCAATATGGGAATC
Left flanking sequence: Indices 310447 -- 310946
CAAATCGACGGGACACTCTCTTCGTAGCGGTCCAAAGATTCTATTTGAGAGCCAGGGCATCTTGG
ATAGGTCATTTGAAGTAGGGAGTCTCGGTTCGTTGCGGAAGTTCACGATGCCTGGGCTTTTTGAT
CGATCGTAGAACCTTAGTATGTCTGCGTGCACCCCCTAAATGGAAAGGTGAAATTGCGGCAGTTT
CTTTATCTATTCATTTGATACGGCGGGCGCGGCTTTACAGCTTCTAATTTGGAAAAACCTTCTGT
ATAAAGTTCAAAATGGTGAATTAAGGCAGAGTAGACTGATGATCCCGTAGTCATTTAGGCCGTTC
TAAGGTTCCCCCCCCTAAAGAAAGAGAAAGGGGGGCCCCTTTTCATAGTGACCCCCCAATACCAT
ACCCCCGACCCCCCTACCGCCGGCAGGGGGGGGGCGGACCCCTCAAACCTTCTAAGTAGAAGGTT
TGGGATTGAAGTTGGGGGGTTCCTTCCAAGGGGGTGGGGGGGGTG
Right flanking sequence: Indices 311012 -- 311511
AGAATCTTTTCAAGATTCAAAATTCGAAAGAACTAAACCAAGACATATACCATGCAAATGCTCTT
GAAGAAAGAAGATAGGGTGGATATCGAGATAGAAACGACAGATGCATGGCCACTACTTGAGCCAG
GCCACTATTCTAAGATGGGTTTCTATAGACTATAGAGAATAGATACGAGCCATATACCAAATCCA
CCACTAGAATTGATGAATAAGGATCCGGGAAATAACTGGATTCGGAAAATAGATGGCACTATCGG
GCGGGAAATAACTGGCCTAATAAGATAGGGTGGATGTGGCAAGAGGATGGGCACTGCTCTATACT
ATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGC
GTAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGT
TGCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGC
Found at i:310994 original size:36 final size:35
Alignment explanation
Indices: 310947--311019 Score: 110
Period size: 36 Copynumber: 2.1 Consensus size: 35
310937 GGGGGGGGTG
*
310947 TTCATCAATATGGGAATCTTCATAAATAGGAGAATC
1 TTCATCAATATGGGAATCTTAATAAATA-GAGAATC
* *
310983 TTCATCAATATGGGAATCTTAATCAATATAGAATC
1 TTCATCAATATGGGAATCTTAATAAATAGAGAATC
311018 TT
1 TT
311020 TTCAAGATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 8 0.24
36 26 0.76
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (35 bp):
TTCATCAATATGGGAATCTTAATAAATAGAGAATC
Left flanking sequence: Indices 310447 -- 310946
CAAATCGACGGGACACTCTCTTCGTAGCGGTCCAAAGATTCTATTTGAGAGCCAGGGCATCTTGG
ATAGGTCATTTGAAGTAGGGAGTCTCGGTTCGTTGCGGAAGTTCACGATGCCTGGGCTTTTTGAT
CGATCGTAGAACCTTAGTATGTCTGCGTGCACCCCCTAAATGGAAAGGTGAAATTGCGGCAGTTT
CTTTATCTATTCATTTGATACGGCGGGCGCGGCTTTACAGCTTCTAATTTGGAAAAACCTTCTGT
ATAAAGTTCAAAATGGTGAATTAAGGCAGAGTAGACTGATGATCCCGTAGTCATTTAGGCCGTTC
TAAGGTTCCCCCCCCTAAAGAAAGAGAAAGGGGGGCCCCTTTTCATAGTGACCCCCCAATACCAT
ACCCCCGACCCCCCTACCGCCGGCAGGGGGGGGGCGGACCCCTCAAACCTTCTAAGTAGAAGGTT
TGGGATTGAAGTTGGGGGGTTCCTTCCAAGGGGGTGGGGGGGGTG
Right flanking sequence: Indices 311020 -- 311519
TTCAAGATTCAAAATTCGAAAGAACTAAACCAAGACATATACCATGCAAATGCTCTTGAAGAAAG
AAGATAGGGTGGATATCGAGATAGAAACGACAGATGCATGGCCACTACTTGAGCCAGGCCACTAT
TCTAAGATGGGTTTCTATAGACTATAGAGAATAGATACGAGCCATATACCAAATCCACCACTAGA
ATTGATGAATAAGGATCCGGGAAATAACTGGATTCGGAAAATAGATGGCACTATCGGGCGGGAAA
TAACTGGCCTAATAAGATAGGGTGGATGTGGCAAGAGGATGGGCACTGCTCTATACTATATAGGC
TGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAAGGTT
ATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTTGCACACT
GCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCCCCTTCCC
Found at i:311554 original size:32 final size:32
Alignment explanation
Indices: 311513--311593 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
311503 CTGGCCGGCC
311513 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
311545 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
311577 CCTTCCCTTCGCTACGC
1 CCTTCCCTTCGCTACGC
311594 GGAGTAAACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 311013 -- 311512
GAATCTTTTCAAGATTCAAAATTCGAAAGAACTAAACCAAGACATATACCATGCAAATGCTCTTG
AAGAAAGAAGATAGGGTGGATATCGAGATAGAAACGACAGATGCATGGCCACTACTTGAGCCAGG
CCACTATTCTAAGATGGGTTTCTATAGACTATAGAGAATAGATACGAGCCATATACCAAATCCAC
CACTAGAATTGATGAATAAGGATCCGGGAAATAACTGGATTCGGAAAATAGATGGCACTATCGGG
CGGGAAATAACTGGCCTAATAAGATAGGGTGGATGTGGCAAGAGGATGGGCACTGCTCTATACTA
TATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCG
TAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTT
GCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCC
Right flanking sequence: Indices 311594 -- 312093
GGAGTAAACCTAATAGTGTGGGATCTACTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCTACT
TCCCTTCGCTACGCGAAGTAAGGGGATTTCCTGGGGATCATACTATAATAGTAGAACATGCAGTG
ACATATAAAGTGGATGGCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCG
GCCACTGTCTATGCACTGTGCCCAATAGTGCCTATCTCTCATGGCACTGGGGCCAGCCACTATCC
ACCGTGCCTTCACACCCTTCTATTCAAAGAAGATCGGGTGGATGTCTACACCACAGGCGGGCCGG
GGCTCTATACTATTCACTATCAGATCCCCAATAGTACCAATAGAATAGTAGCCGGCCACTAGCAA
AATCTTTCAAGCTATTGAAGAAGAGAGAACACTATGCACTATCTAAAAAGAAACATTAAGCTAAG
AAAAGCAAGATCACACCCGTCCTTCCCTTCGCTACGCTCAGGAAA
Found at i:312578 original size:225 final size:228
Alignment explanation
Indices: 312180--312675 Score: 926
Period size: 225 Copynumber: 2.2 Consensus size: 228
312170 TCTGTTGTAG
312180 TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATCCCTTAGGATCAAGGATCTAATCGCT
1 TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATCCCTT---AT-AAGGATCTAATCGCT
312245 AATTCATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCA
62 AATTCATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCA
312310 TCACCTGATTCATCTAAGACAAGGATCATAGAAGCAATAGAATACCATAGAGCCTACAACAGAGA
127 TCACCTGATTCATCTAAGACAAGGATCATAGAAGCAATAGAATACCATAGAGCCTACAACAGAGA
312375 TCTAGTTCGGATCCCTATGGATTAGGATGTTCCCTAT
192 TCTAGTTCGGATCCCTATGGATTAGGATGTTCCCTAT
312412 TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATCCC-T-T-AGGATCTAATCGCTAATT
1 TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATCCCTTATAAGGATCTAATCGCTAATT
312474 CATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCATCAC
66 CATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCATCAC
*
312539 CTGATTCATCTAAGACAAGGGTCATAGAAGCAATAGAATACCATAGAGCCTACAACAGAGATCTA
131 CTGATTCATCTAAGACAAGGATCATAGAAGCAATAGAATACCATAGAGCCTACAACAGAGATCTA
312604 GTTCGGATCCCTATGGATTAGGATGTTCCCTAT
196 GTTCGGATCCCTATGGATTAGGATGTTCCCTAT
312637 TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACAT
1 TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACAT
312676 ATTCACATTG
Statistics
Matches: 263, Mismatches: 1, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
225 219 0.83
227 1 0.00
231 1 0.00
232 42 0.16
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (228 bp):
TAATCAGGATCAGGGCCTGATCACTATGGCTATTCACATCCCTTATAAGGATCTAATCGCTAATT
CATAGTTGCTATGGCATTTAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCATCAC
CTGATTCATCTAAGACAAGGATCATAGAAGCAATAGAATACCATAGAGCCTACAACAGAGATCTA
GTTCGGATCCCTATGGATTAGGATGTTCCCTAT
Left flanking sequence: Indices 311680 -- 312179
GGGGATTTCCTGGGGATCATACTATAATAGTAGAACATGCAGTGACATATAAAGTGGATGGCCCT
TGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCACTGTCTATGCACTGTGC
CCAATAGTGCCTATCTCTCATGGCACTGGGGCCAGCCACTATCCACCGTGCCTTCACACCCTTCT
ATTCAAAGAAGATCGGGTGGATGTCTACACCACAGGCGGGCCGGGGCTCTATACTATTCACTATC
AGATCCCCAATAGTACCAATAGAATAGTAGCCGGCCACTAGCAAAATCTTTCAAGCTATTGAAGA
AGAGAGAACACTATGCACTATCTAAAAAGAAACATTAAGCTAAGAAAAGCAAGATCACACCCGTC
CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACC
CTACACTATAGACGGGGCATGGCCACTGCTAGATCTCTGTTGTAG
Right flanking sequence: Indices 312676 -- 313175
ATTCACATTGATTAGGATCAAGGATCTAATCGCTATGGCTATTCATATTGATTAAGGTAGTGTCC
AAGCCAAGCCGGTTCGAAAGAATCAAGGATCTAATTGCTAATTCATAGTTGCTATGGCATTTAGA
TCAGGCCTATAACTATCTCGAACCGGATCATGAGCCTATTCATATTAATTATATATTAGCCCCTA
TTGATATTGAATGAATGGGGCGAGCAGTTGGGGGTTCGGAAATGGATTAGCGGGAGGGCGGCCCC
ACCCTTAAATAAAGGAAGGTGTACGATCCCTCCTTTCCCATGAATCAATAGGCTGGCTATTCATG
CCCGTCCCCTTTCCATCTATCTTGCCCGGCAAGAAGAGTGATTTTCACCCCATTCAATGAAGAAA
GAGACGGAGAGAGAACTGGCTTTTGCTTAGCTTATCGCCGGCCCTTTCTTCTCTATTGATTTCCA
TTTAGGGGGTGGGGAAGGACCAGAGTATCCGGTGTCACATTGATT
Found at i:314752 original size:17 final size:18
Alignment explanation
Indices: 314720--314753 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
314710 GTAGGAATTC
*
314720 ATCAATATGGGAATCTTA
1 ATCAATATGAGAATCTTA
314738 ATCAATAT-AGAATCTT
1 ATCAATATGAGAATCTT
314754 TTCAAGATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
ATCAATATGAGAATCTTA
Left flanking sequence: Indices 314220 -- 314719
GTGACTGTTCATCGGAACTGTTATAGTCTGAATACTCATAGGGTTGGGTCGACGCCCAGTCCTTG
TTCGGGTACATCCGCCTCCCCCCGAACTGTACTTGCAAGTTTCCCCGCAAAAAGCTCTCCACGCC
TACTATTGACACTCGAGCAGTAGACTATTATAGAGTTAGGTGGTTCTCCCCCCTCTCAGGTATAG
ACCGTAATAGAATAAGAACGGTGGCCCTACAGACAACAGGGGGGACCTTTTTACCGTTCGATCGA
GCCAGCCATAGTGAAACCGAAAAACAAGGTGAAACCCCCAAAACTTATAGTTATTATTATTAATT
TCTTATTGTGTTCCACATTCTCAGTGGTTCCACACACACACGAGACACGCGTATGAAAAGGTATG
GGACGACCAGTTAACCACGGAAAGCGAATTATATCCTATAGCCGTATTCTTAGGATGCTCGATAA
GTGCGAAGTCAAAAGGGATGCTAGTCGGCGAAGTTGTAGGAATTC
Right flanking sequence: Indices 314754 -- 315253
TTCAAGATTCAAAGACTAGACAAAAATTCAAAAGAACTAGACAAAAAAGATGTTAACTGCTATAT
GCTATAATGTTATAAGATAGGGTGAAGATAGATCATAGATCGGATACTATTTACTTTAATATTAT
CTCAGATATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAACATTTATAGGAGCCTTAAT
ACCAGATCCCCAATAGTGATGTTAGATCCACGATCGGATCCTGACTAACAGTCATGGAGAAATAG
AGGTTAAACCTTTCCTGAGCGTAGCGAAGGGAAGGCACATCCCATAGTTTTACTCCGCGTAGCGA
AGGGAGAGACACCATAGAGATCTCTTTTTAATCACATAGTTTTATAGTGCCCTCTTTAATCACAG
AATAGGATTTCACACTACAGTGTATAGTGTTCTCTCTCTTTTTTTAGCTCATAATAGAAAGAGGG
TGAACTATATTGGATTCAAACTATGTGATTAAAAAGAGATTAGGC
Found at i:314784 original size:19 final size:21
Alignment explanation
Indices: 314760--314800 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
314750 TCTTTTCAAG
314760 ATTC-AAAG-ACTAGACAAAA
1 ATTCAAAAGAACTAGACAAAA
314779 ATTCAAAAGAACTAGACAAAA
1 ATTCAAAAGAACTAGACAAAA
314800 A
1 A
314801 AGATGTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 12 0.60
ACGTcount: A:0.61, C:0.15, G:0.10, T:0.15
Consensus pattern (21 bp):
ATTCAAAAGAACTAGACAAAA
Left flanking sequence: Indices 314260 -- 314759
GGGTTGGGTCGACGCCCAGTCCTTGTTCGGGTACATCCGCCTCCCCCCGAACTGTACTTGCAAGT
TTCCCCGCAAAAAGCTCTCCACGCCTACTATTGACACTCGAGCAGTAGACTATTATAGAGTTAGG
TGGTTCTCCCCCCTCTCAGGTATAGACCGTAATAGAATAAGAACGGTGGCCCTACAGACAACAGG
GGGGACCTTTTTACCGTTCGATCGAGCCAGCCATAGTGAAACCGAAAAACAAGGTGAAACCCCCA
AAACTTATAGTTATTATTATTAATTTCTTATTGTGTTCCACATTCTCAGTGGTTCCACACACACA
CGAGACACGCGTATGAAAAGGTATGGGACGACCAGTTAACCACGGAAAGCGAATTATATCCTATA
GCCGTATTCTTAGGATGCTCGATAAGTGCGAAGTCAAAAGGGATGCTAGTCGGCGAAGTTGTAGG
AATTCATCAATATGGGAATCTTAATCAATATAGAATCTTTTCAAG
Right flanking sequence: Indices 314801 -- 315300
AGATGTTAACTGCTATATGCTATAATGTTATAAGATAGGGTGAAGATAGATCATAGATCGGATAC
TATTTACTTTAATATTATCTCAGATATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAAC
ATTTATAGGAGCCTTAATACCAGATCCCCAATAGTGATGTTAGATCCACGATCGGATCCTGACTA
ACAGTCATGGAGAAATAGAGGTTAAACCTTTCCTGAGCGTAGCGAAGGGAAGGCACATCCCATAG
TTTTACTCCGCGTAGCGAAGGGAGAGACACCATAGAGATCTCTTTTTAATCACATAGTTTTATAG
TGCCCTCTTTAATCACAGAATAGGATTTCACACTACAGTGTATAGTGTTCTCTCTCTTTTTTTAG
CTCATAATAGAAAGAGGGTGAACTATATTGGATTCAAACTATGTGATTAAAAAGAGATTAGGCCC
GGCCTCCCTCCGAGTGCAAGTGCCGGATCCATTGGCTAAGGGTTG
Found at i:318896 original size:24 final size:24
Alignment explanation
Indices: 318865--318912 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
318855 TCCCTTTCCT
318865 GAGCGTAGCGAAGGGAAGGTTATC
1 GAGCGTAGCGAAGGGAAGGTTATC
318889 GAGCGTAGCGAAGGGAAGGTTATC
1 GAGCGTAGCGAAGGGAAGGTTATC
318913 CCTTTCCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.42, T:0.17
Consensus pattern (24 bp):
GAGCGTAGCGAAGGGAAGGTTATC
Left flanking sequence: Indices 318365 -- 318864
ATCCCGAAGGCAGGTTTGTATGGTTACCAGTGAGTCAGCTCATTTATTAGGTTGTTGGTCTTGTT
CGCTATCATTATTTGTTCCTGTGATGATCCATCTCATCCGTTCACTAATTGGGAAGAGATGTAAA
ATAGAATCCACGAGCTCTGCGCCTTTCTCGGGCCCGCCCCGCTCGCCGCTCCTAGATAAGAGCTA
TATGAATAGGCTCATGATCCGGTTCGAGATAGTTATAGGCCTGATCTAAATGCCATAGCAACTAT
GAATTAGCGATTAGATCCTTGATTCTTTCGAACCGGCTTGGCTTGGACACTACCTTAATCAATGT
GAATAGCCATAGCGATTAGATCCTTGATCCTAATCAATTCAATAAGAGGCACAGTGACAGTGATC
AGGCCCTGATCCTGATTACTACAACAGAGATCTAGCAGTGGCCATGCCCCGTCTATAGTGTAGGG
TAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCT
Right flanking sequence: Indices 318913 -- 319412
CCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGA
TCCGATCTCTTCTCTATCGACCACATGACTGTTAATACAGGGATCCGCCTATTCTGATATTCTTA
CGGATCCGTGCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTCAGGGCATGTTGTATATGCA
TATACACTATGGGCCCCACCACTATTGGCAATAGTGCAGTGGCCGGGCTCCCGGATCACTTCTGT
CATTAATAGAGTGTGGATCTGGTATAGGCTCGTATCTTTCCGCCTGCAGTGTAGACATCCACCCG
ATCTTAGAACAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCTATCT
TCTTTCTTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAGTTCTTTCGAATTTTTGTCTAGTT
TTTGAATCTTGAAAAGATTCTATATTGATTAAGATTCCCATATTC
Found at i:318919 original size:56 final size:56
Alignment explanation
Indices: 318833--318944 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
318823 ACCCTTTCCT
318833 GAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATC
1 GAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATC
318889 GAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATC
1 GAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATC
318945 CCTTTCCTGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.25, C:0.18, G:0.36, T:0.21
Consensus pattern (56 bp):
GAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATC
Left flanking sequence: Indices 318333 -- 318832
TTCTTGTTGCTATTCATCTCCAGTTCAGATCGATCCCGAAGGCAGGTTTGTATGGTTACCAGTGA
GTCAGCTCATTTATTAGGTTGTTGGTCTTGTTCGCTATCATTATTTGTTCCTGTGATGATCCATC
TCATCCGTTCACTAATTGGGAAGAGATGTAAAATAGAATCCACGAGCTCTGCGCCTTTCTCGGGC
CCGCCCCGCTCGCCGCTCCTAGATAAGAGCTATATGAATAGGCTCATGATCCGGTTCGAGATAGT
TATAGGCCTGATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATTCTTTCGAAC
CGGCTTGGCTTGGACACTACCTTAATCAATGTGAATAGCCATAGCGATTAGATCCTTGATCCTAA
TCAATTCAATAAGAGGCACAGTGACAGTGATCAGGCCCTGATCCTGATTACTACAACAGAGATCT
AGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCT
Right flanking sequence: Indices 318945 -- 319444
CCTTTCCTGAGCGTAGCGAAGGGAAGGGCCTGATCCGATCTCTTCTCTATCGACCACATGACTGT
TAATACAGGGATCCGCCTATTCTGATATTCTTACGGATCCGTGCCTTCCCTTCGCTACGCTCAGG
AAAGGGATAACCTCAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTGGCAAT
AGTGCAGTGGCCGGGCTCCCGGATCACTTCTGTCATTAATAGAGTGTGGATCTGGTATAGGCTCG
TATCTTTCCGCCTGCAGTGTAGACATCCACCCGATCTTAGAACAGTGGCCTGGCCCGGCCATGCA
TCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGT
CTTGGTTTAGTTCTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAAAAGATTCTATATTGATTAA
GATTCCCATATTCTATTGATGAAGATTCCCATATTGATTCATAGC
Found at i:318972 original size:37 final size:32
Alignment explanation
Indices: 318824--318971 Score: 240
Period size: 32 Copynumber: 4.9 Consensus size: 32
318814 GTAGGGTAAA
318824 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
318856 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTA-
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
318887 -----T-C-GAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
318912 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
318944 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
318972 GCCTGATCCG
Statistics
Matches: 108, Mismatches: 0, Indels: 16
0.87 0.00 0.13
Matches are distributed among these distances:
24 22 0.20
25 1 0.01
26 1 0.01
30 1 0.01
31 1 0.01
32 82 0.76
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.22
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 318324 -- 318823
CTCTTTTTCTTCTTGTTGCTATTCATCTCCAGTTCAGATCGATCCCGAAGGCAGGTTTGTATGGT
TACCAGTGAGTCAGCTCATTTATTAGGTTGTTGGTCTTGTTCGCTATCATTATTTGTTCCTGTGA
TGATCCATCTCATCCGTTCACTAATTGGGAAGAGATGTAAAATAGAATCCACGAGCTCTGCGCCT
TTCTCGGGCCCGCCCCGCTCGCCGCTCCTAGATAAGAGCTATATGAATAGGCTCATGATCCGGTT
CGAGATAGTTATAGGCCTGATCTAAATGCCATAGCAACTATGAATTAGCGATTAGATCCTTGATT
CTTTCGAACCGGCTTGGCTTGGACACTACCTTAATCAATGTGAATAGCCATAGCGATTAGATCCT
TGATCCTAATCAATTCAATAAGAGGCACAGTGACAGTGATCAGGCCCTGATCCTGATTACTACAA
CAGAGATCTAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 318972 -- 319471
GCCTGATCCGATCTCTTCTCTATCGACCACATGACTGTTAATACAGGGATCCGCCTATTCTGATA
TTCTTACGGATCCGTGCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTCAGGGCATGTTGTA
TATGCATATACACTATGGGCCCCACCACTATTGGCAATAGTGCAGTGGCCGGGCTCCCGGATCAC
TTCTGTCATTAATAGAGTGTGGATCTGGTATAGGCTCGTATCTTTCCGCCTGCAGTGTAGACATC
CACCCGATCTTAGAACAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACC
CTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAGTTCTTTCGAATTTTTGT
CTAGTTTTTGAATCTTGAAAAGATTCTATATTGATTAAGATTCCCATATTCTATTGATGAAGATT
CCCATATTGATTCATAGCCACTTCGCGCTTTTCCTGCGCGCGCTA
Found at i:319416 original size:23 final size:23
Alignment explanation
Indices: 319390--319434 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
319380 AAAGATTCTA
*
319390 TATTGATTAAGATTCCCATATTC
1 TATTGATGAAGATTCCCATATTC
319413 TATTGATGAAGATTCCCATATT
1 TATTGATGAAGATTCCCATATT
319435 GATTCATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (23 bp):
TATTGATGAAGATTCCCATATTC
Left flanking sequence: Indices 318890 -- 319389
AGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
GCGTAGCGAAGGGAAGGGCCTGATCCGATCTCTTCTCTATCGACCACATGACTGTTAATACAGGG
ATCCGCCTATTCTGATATTCTTACGGATCCGTGCCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
CCTCAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTGGCAATAGTGCAGTGG
CCGGGCTCCCGGATCACTTCTGTCATTAATAGAGTGTGGATCTGGTATAGGCTCGTATCTTTCCG
CCTGCAGTGTAGACATCCACCCGATCTTAGAACAGTGGCCTGGCCCGGCCATGCATCTGTCGCTT
CTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAG
TTCTTTCGAATTTTTGTCTAGTTTTTGAATCTTGAAAAGATTCTA
Right flanking sequence: Indices 319435 -- 319934
GATTCATAGCCACTTCGCGCTTTTCCTGCGCGCGCTATTGGGCCGGATCAGGAATATGCGATGGT
TCAAGGCCCTTACCGGAGAGAAAAAGCTTGCGAGGAGCAAGCCCCCCGCGAGCGAATAAAGTGGA
CTGCGCCCGCAAGGCGAAAGGAGCCTCCCTCTCCCATCGACGATGTTCTTGCGGGGGAAAAGCCG
ATTCCGTTTGAACTAAAGATTCATGTGCACATGCCCTTCAACGCTTCTCCCTATTCGCGTTTTCC
GCCCGCCATTGGCGCTTCGCTTTCCTTCATATTCGCGAATGATGGATCGTAGCGAATCATTCTCT
TTATTTTGCTCCGTTGATTGATCGGAACTATTCCGAATTTGCGACAAGTCCTAGCATTAGTATGA
GTTCGTTGACCGCGTAAGGGCAATCCATCTTGATGACGAATTCCACGATAACGAGAAATAGAAAT
TGATCGTTCGATGTCTGCTCGTTTTCCCCTCTTCAATTCCCAATG
Found at i:320467 original size:32 final size:32
Alignment explanation
Indices: 320426--320619 Score: 379
Period size: 32 Copynumber: 6.1 Consensus size: 32
320416 AAAATCCGGT
320426 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
320458 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
320490 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
320522 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
320554 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
320586 CCTTCCCTTCGCTACGCTCAGGAAAGGGTTAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
320618 CC
1 CC
320620 ACAGTTTTTT
Statistics
Matches: 161, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 161 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 319926 -- 320425
TTCCCAATGAACAACATGGTCCTGACCTATTATTTGTTCAATTTGGTCGATCTGATACTTAGTTG
ACTCATTAACCTTTATGTTATCACTGATACCTAATCGATAACGAACCCGAGTGGCTTTTTTAGGT
CCAATTCCATCAATTTTGGTTGAGGCAATTCTTACTTGTTCGTTGGGAACTGATCTAGCTCCTGG
AATATATGACATTATTGATTCTTGATTCTCCTGGTCCTCCGTGCCGGCTGGAATCATGGATAGGT
TCGCTTTTATCGGGTTTTATGAGAATATTATTTCATTGGTTCCGCGTTCTTATCGATTCTCTCAA
GAAGGAATAAAGTAGAGTCGATATCGGGTGGGGCCGTTGTGCTGCTTTCGCCGTCTCTTTCGAAA
CGGAGGTTCCCTACTCCTTCGAATCCTCCTTCGACGGACTAGATGGGTCATCAACCAACCCCCCC
CCCATTCAACCACCGTACTGAGCCATGGGGCATTCAAAATCCGGT
Right flanking sequence: Indices 320620 -- 321119
ACAGTTTTTTCGGGATTATCTGAACCAACTTCTTCATTATTGGAAAAATAGGGGCCGGCTCAATG
GGTGACCGATCCCGATGTTTGGAAAGGAAGAATCGGACGGAGCCACTATTTATCTGATCCATCGG
AATCTAGGTTGAGAGTTTCTAATACTCCCTCGAAATGGTGATGTGATCTGTGTGGTGGTCTTCCG
TTTGTATTTGTGTACTAAACAGCGACGCATTGGCCATGTCTCTATAGTAAATTCGCACGCCCCGC
TTCGTGTGCGATTTGGTTCAGGTAGGTCACTATTATGGTATGGGATACCATTCGTGAGACTGCAA
TAATCCACGGACCAAGCAAGCATGGGCGGCTTCACCCGCCGGACGGGAACGAAGAGGGAAACATA
GCAGCATGTAAGGCGAGGGGGCATAGCGACGCTGCCGTTTCATTGGGCTGGAGAGGTTCCTAACG
GAACGGCTATGCCAGTGAGTTATATGGGGGTTTACTGATCCACAT
Found at i:322375 original size:23 final size:23
Alignment explanation
Indices: 322330--322375 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
322320 GCAGATCGAC
* * *
322330 TCGACTGGTCGCTCCTATGGCTA
1 TCGAATGGGCGCTCCTATCGCTA
*
322353 TCGAATGGGCGCTCCTCTCGCTA
1 TCGAATGGGCGCTCCTATCGCTA
322376 CTCGTCGAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.13, C:0.33, G:0.26, T:0.28
Consensus pattern (23 bp):
TCGAATGGGCGCTCCTATCGCTA
Left flanking sequence: Indices 321830 -- 322329
TACGTATGATGGAGGCTAGCTCTATCTACGTATGAGTGCGTAGCTGACTCTGGTATGGAGGCTAG
TAAAGGTACGTACGAGGGCAGGGGTAAGTGAGGAAGGGGTTCCGCTTGGCCCTTCGGCTGGGCTT
CCTTCCCTCTCGATCGGGAGACAAGTGGTGATTCTTGCATCACGTTTTGGCTCTCGGGTAGGAGC
TGCTAGCTAAGCCCCGATCGAGCACTACCAATATGATGCAGCACTACCAATATGTAGCGAGGAAC
GGGAACCCGCGAGATGATTTGGAGGAAAAGAAAGAGCCGCCTAGTTCCTGAACCAATTACTTATT
CAAGGCCTCCCTTGCACCCCCCATTCAAGTAGTCAAAACGGGGGCGAAGCGGGGTTCGGGGGGGA
CCTTTCCCTTTCCCCTACCCCTTCTCGGTCCCATCGACTGGGAGGATCGCTGCGCTCTCACTATT
GTACGGCTCTTTACTGGAAGGATCGCTACTCGACCGCAGATCGAC
Right flanking sequence: Indices 322376 -- 322875
CTCGTCGAATGGGCTGGGTGGGAGGAAGCATCGCTACTGCACAGCAGTTCGACTCTGGTCGCTCC
TATTGAATGGTAGATCCCTCGACTGGAAGCATCGCTTAACGACAGGACGGGAGCGCTTCTCGGTC
GCTACTAGAACGGGCGGGCGCTACTTCTCCATCCATTCAGGGGGGGGGGCCGGAGAAGTTGATCC
CAGTCGTAGTCGGTGACCCGGACGGCATGCGAACGCAGAGACGCTGGTCACTTCTGTGGCAGAAG
TCGGAGAAGGTCAAAGTAGGTTCGGTTGGAGGTCCGGGCGGAGTAACGAATTACGAAGTAACGAA
AACTGGGACGAAGCGTGGGATACGAATACGACGTAACAATACAAGGTACGAATCCCTCCTCCCTT
TCAAGAAATGAAGAAGGGAGGGTGCCCAATCTGGGACCGGCAGTTTTGGCCCTTCCCGGCCAGCC
AGACCTTTTCTGTTCATCAAATAGGAAGAACCCGCTCATCTCCGT
Found at i:325649 original size:18 final size:18
Alignment explanation
Indices: 325625--325698 Score: 80
Period size: 18 Copynumber: 4.1 Consensus size: 18
325615 CTCCGCCTAA
325625 TTCATCAATATGGGAATC
1 TTCATCAATATGGGAATC
* * *
325643 CTCATCAATAGGGGAATA
1 TTCATCAATATGGGAATC
*
325661 TTCAATGC--TATGAGAATC
1 TTC-AT-CAATATGGGAATC
325679 TTCATCAATATGGGAATC
1 TTCATCAATATGGGAATC
325697 TT
1 TT
325699 TTCAAGATTC
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
16 1 0.02
17 2 0.05
18 38 0.86
19 2 0.05
20 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (18 bp):
TTCATCAATATGGGAATC
Left flanking sequence: Indices 325125 -- 325624
CCAACTACCAGCATCCTATCGTAGTGCATTATCGAAAAGACCAGTGGTTTTGCCAGCATATCCGA
TGCTGATGCAATTGATTCTATCAAGTTCATTCCGGTAGTGCATAGGCTCGCCAGCGTCCCCGGCT
TCTGTAGTCCCCTATGTTCGTTCCCTGATAGAGCCAGTGGCTAGTAGAGGTTGGGAATGATGGCT
AGGGGTTAGGTAGCTGGCCGGAAGGCAGAGAGTAGTCTATATATCCGGCTCGTCCGCCCGGGCCC
CTATCGGATGAAGAAGTAAAGAAAGGCAAAGATCTCGGGTTGGTTAGCTGGCCAGCGGGTTCAAT
TACCAGCCTCCGAGCCTCCAATGGGATGGTTGAGGGTTGAATCCTTGATTCCTTGCCCTGTTCAA
GGAATCGAATTCTTTCTTCTTATTTATCCATTTAGGGGCGGGCTCCCGAGAAGCCAAAGTCCGGC
CCCGAAACGTCAATAGGACCACCTATACGGGCCCCCTCCGCCTAA
Right flanking sequence: Indices 325699 -- 326198
TTCAAGATTCAAAAACTAAACCAAGACATATACCATGCAAATGCTCTTGAAGAAAGAAGATAGGG
TGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATAGGGTGGA
TGTCTACAAGATAGACGGGCCGGGCCACTACTGGCCCTATACCAGATCCACCACTAGAATTGATG
AATAAGGATCCGGGAAATAACTGGATTCGGAAAATAGATGGCACTATCGGGCGGGAAATAACTGG
CCTAATAAGATAGGGTGGATGTGGCAAGAGGATGGGCACTGCTCTATACTATATAGGCTGCACCC
ACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAGCGAAGGGAAGG
CACGGGCCACTCTTCTTATTATGGGGTTGCACACTGCACCCCAGGCCACGGGCCATCACTGTGCT
GGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTC
Found at i:326203 original size:32 final size:32
Alignment explanation
Indices: 326162--326242 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
326152 CTGGCCGGCC
326162 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
326194 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
326226 CCTTCCCTTCGCTACGC
1 CCTTCCCTTCGCTACGC
326243 GGAGTAAAAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 325662 -- 326161
TCAATGCTATGAGAATCTTCATCAATATGGGAATCTTTTCAAGATTCAAAAACTAAACCAAGACA
TATACCATGCAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGC
ATGGCCGGGCCAGGCCACTATTCTAAGATAGGGTGGATGTCTACAAGATAGACGGGCCGGGCCAC
TACTGGCCCTATACCAGATCCACCACTAGAATTGATGAATAAGGATCCGGGAAATAACTGGATTC
GGAAAATAGATGGCACTATCGGGCGGGAAATAACTGGCCTAATAAGATAGGGTGGATGTGGCAAG
AGGATGGGCACTGCTCTATACTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGG
TTAACCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTT
GCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCC
Right flanking sequence: Indices 326243 -- 326742
GGAGTAAAACTAATAGTGTGGGATCTACGTTTCAAGATTCATAAATAGGATAATAGTATTAGTTA
TTTATGAAAGAGAAGCAATAAACGAAGGATTGATACTACTTCTATTTCAGTGCCAGAGAAACCAA
ATTAGTCCCTAGTGGTATCTCTCTCTCTACTGCTCGCATGAGTGAATCGTATATAAGGTTATAAG
AAACAGTTCTTGTAAGCTGTTGCAGAAAGAACCTACTATGGGAGCTGGTCATGTCCGAAGTTGTT
ACTTTAATCGCAAGGTTATCCCTTTCCTGAGCGTAGCGAATGAAAGGCAGGGCTAGTGACTGGAG
TGAAGCCGTAACAAGGTAGCCATACTGGAAGGTGCGGCTACCTTGTAAAGACGATTGCCCCGCCA
ATGAGATACTCCCTTCATTCTCCCCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTA
TGTTGTTTACGAGATTTCGTTCTTTTGGGGTTATAGTCGATGATA
Found at i:326982 original size:32 final size:32
Alignment explanation
Indices: 326941--327040 Score: 200
Period size: 32 Copynumber: 3.1 Consensus size: 32
326931 CCAAGTGCTT
326941 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
326973 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
327005 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
327037 CCTT
1 CCTT
327041 GTTCGTTCCC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 326441 -- 326940
CAGTTCTTGTAAGCTGTTGCAGAAAGAACCTACTATGGGAGCTGGTCATGTCCGAAGTTGTTACT
TTAATCGCAAGGTTATCCCTTTCCTGAGCGTAGCGAATGAAAGGCAGGGCTAGTGACTGGAGTGA
AGCCGTAACAAGGTAGCCATACTGGAAGGTGCGGCTACCTTGTAAAGACGATTGCCCCGCCAATG
AGATACTCCCTTCATTCTCCCCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTATGT
TGTTTACGAGATTTCGTTCTTTTGGGGTTATAGTCGATGATAGTCTATTTATCTCATCTCTACCG
AAACACGGTAGTAGAACAATCTAAATCTTAGATCGAATTAGTGCACTATGCATAAGAAATAGAAG
AATAAGAAAGAATTTCTTCTTTCTTTCTTATTCTTCTTTCTAATAAAAGCTTCCTATTTACAAAG
AAAAGGATGAATCACTATCACTTTCTTATTAAATCCCAAGTGCTT
Right flanking sequence: Indices 327041 -- 327540
GTTCGTTCCCAGTAGTATGAATCCGTGGATGACACTAGTGCGGAGCTATAGTGAGCCAATCCTAA
ACATTGCTGATAAGTGTTCAATCTATGACATTTATAAGAGCCCTTCCCTGTGCTAGATCTCGTTT
TCGGCCGGAGGCGGGGGCAGGGTTCGAACCTGCAGTCTTCAGGTCATGGGCCTGACGAGTCAACC
AATTACTCTACCCCGCTTCCATTGTTCTTCTCATTATTCCTGTTATTACTATTCAACCTATTGAT
TATGATCTGAATGGGGCCCTATCCGGTGTTCGAATAGATAAGCCCATAGCTAGATAAGAGGGTTT
GCCTTGATTGGGATGTCTCTCTATAGTAGAACCTGTGAATTCTGAGAATTGTTACGTAAGAGGGG
GAACCTATCGCTTGCCCACATTGATAAAGGCATTGCCTATATATAGTTGTAGGCCCACGGTCATT
ACATACGATGCCCCACACCAAAGATCTTGTAAAGCTATTAAGAAC
Found at i:348304 original size:32 final size:32
Alignment explanation
Indices: 348263--348394 Score: 264
Period size: 32 Copynumber: 4.1 Consensus size: 32
348253 GGGAACGAAC
348263 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
348295 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
348327 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
348359 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
1 AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
348391 AAGG
1 AAGG
348395 AAGCACTTGA
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 100 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (32 bp):
AAGGTTATCCCTTTCCTGAGCGTAGCGAAGGG
Left flanking sequence: Indices 347763 -- 348262
GTTCTTAATAGCTTTACAAGATCTTTGGTGTGGGGCATCGTATGTAATGACCGTGGGCCTACAAC
TATATATAGGCAATGCCTTTATCAATGTGGGCAAGCGATAGGTTCCCCCTCTTACGTAACAATTC
TCAGAATTCACAGGTTCTACTATAGAGAGACATCCCAATCGAGGCAAACCCTCTTATCTAGCTAT
GGGCTTATCTATTCGAACACCGGATAGGGCCCCATTCAGATCATAATCAATAGGTTGAGTAGTAA
TAACAGGAATAATGAGAAGAACAATGGAAGCGGGGTAGAGTAATTGGTTGACTCGTCAGGCCCAT
GACCTGAAGACTGCAGGTTCGAACCCTGCCCCCGCCTCCGGCCGAAAACGAGATCTAGCACAGGG
AAGGGCTCTTATAAATGTCATAGATTGAACACTTATCAGCAATGTTTAGGATTGGCTCACTATAG
CTCCGCACTAGTGTCATCCACGGATTCATACTACTGGGAACGAAC
Right flanking sequence: Indices 348395 -- 348894
AAGCACTTGAGATTTAATAAGAAAGTGATAGTGATTCATCCTTTTCTTTGTAAATAGGAAGCTTT
TATTAGAAAGAAGAATAAGAAAGAAAGAAGAAATTCTTTCTTATTCTTCTATTTCTTATGCATAG
TGCACTAATTCGATCTAAGATTTAGATTGTTCTACTACCGTGTTTCGGTAGAGATGAGATAAATA
GACTATCATCGACTATAACCCCAAAAGAACGAAATCTCGTAAACAACATAGGTTAACCCATAGTT
TTACTCCGCGTAGCGAAGGGAAGGGGCAAGCTATTGACGATCACCATAAGGCCAGGCACAACCTT
GGAGAGAGCGGAGCTTTCAGGTATCCGGTCGGATCGATTCGGTTTGGTACCTGCTCGAATAGGCA
TTGAACTCAACGGGAATTCAAGTCATTCCCATTGGTGTGCCCGAATGGTCGTCGTGATCTAGCCT
CCCTTCTGCTCCATTCATTTCTCCATTTAGGGGCGAAGCCATTAG
Found at i:358281 original size:32 final size:32
Alignment explanation
Indices: 358238--358317 Score: 142
Period size: 32 Copynumber: 2.5 Consensus size: 32
358228 AGCCATGCCC
*
358238 CGTAGCAAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
*
358270 TGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
1 CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
358302 CGTAGCGAAGGGAAGG
1 CGTAGCGAAGGGAAGG
358318 CACGTGGTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.23
Consensus pattern (32 bp):
CGTAGCGAAGGGAAGGTTATCCCTTTCCTGAG
Left flanking sequence: Indices 357738 -- 358237
CAGGCCCTGATCCTGATGCATAGGGAACATCCTAATTCATAGGGATGTGATTAGTGCTAGATCTC
TGTTGTAGGCTCTATGGTATTCTATTGCTTCTATGACCATTTAGCCATAGTGATCAGGCCCTGGA
TTCTAATCTATACTTGATCCAATCAATGCTTGGATACTAGCAATAACTGTAATAGGGATTCTATT
ATTGATCCTAATCAATACGTAATAATATGAATCAGGTGATGATTCTAATTCATAGGGAACATCCT
AATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTGCTTCTA
TCTTGATTTGTATTAGATGGATCCGAGCTCTTCTATGCTATAGATATTCCCTGAACTTAGATGGA
TCCGAACTCTTTTGGGCCTAAGAGAGGCTCCGCAATCATCTAAGAACATAGTTCTAGGCCTGGCC
TGAATGCTCCGTCTATACCGTAGGCTCAATGCCATAGCCATGCCC
Right flanking sequence: Indices 358318 -- 358817
CACGTGGTGATCCCCCTGTTCCATAGGTCACACGGTATAGGACAACCCTTAGCCAATGGATCCGG
CACTTGCACTCGGAGGGAGGCCGGGCCTAATCTCTTTTTAATCACATAGTTTGAATCCCGAAGGG
AAGGAGAGTATAGTACACGTCAATCCTGCGCGGGAAGTGCAATGCAATGTGGGAACTCCCCAAGT
ATGTACCTATCCATTGGGTCATTATTCACCGCTGGTTCCCGGTCTACGATAGGATATCCATTACC
CCACCGCCAACCCCGGGTTGCTCGGATATTGCTATGTGATAGTAGTGGGTCGGCCTTCGATAGGC
CTGTGTCGCTGCTGAGACAGACGGAATCTTGGTCCTGGCCTCACCGCCCGCCCCATAGGATATGC
ATGGAGACACATACTCCCCCAAGGCTCACTTACCTAACCACGGTAGTACAGCTCTTTCGTACACG
TTCACTTGCATCACATACACAGGTGCTCTCTGGACCGTGCAATAA
Found at i:360389 original size:18 final size:18
Alignment explanation
Indices: 360349--360392 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
360339 TTCCCATATT
360349 CTATTGATGAAGATTCTC
1 CTATTGATGAAGATTCTC
*
360367 CTATTTATGAAGATTC-C
1 CTATTGATGAAGATTCTC
360384 CATATTGAT
1 C-TATTGAT
360393 TAATAGGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (18 bp):
CTATTGATGAAGATTCTC
Left flanking sequence: Indices 359849 -- 360348
CCCCCTGTTGCCGGTTCCAGTTGAACGAGCCGCCCATAAAAGATGTATCCGGAAAGGGTGGGCCG
GCTGCCCTATTTCCTTATATCTAAGAGCCAAGCTTGGTTATTGCGGATCAGGAAGAAGCCCCGGC
CGGGTGTCGTGCCAGGTTCCAGTTGGGGCGCATGTGTGAAGTGCTTGATGTCGGTGTTCCGTTCC
CTTGTATCACACTGACAAATGCTTTGCGGTCAGGTACGAGCGTTCGGAAAGAACAAAGGATCGAT
AAGCCGCCTTGGGTGAGTCGTCATCGGAAGGTGTTGGATCTAATAGTATAGTAAGCCCCTCGATT
TCCCTGGCATTGGCATCATGACGAGATGGAGGTCAAGGAGCGGACCCCCCTTTCCCTATCAATAG
AAGTAGCGATAGCCGTGCGTGAAGGAGCGTGAGCGTAACGAGAGCCACCCGCTGAACAAACTAGT
TTTTGAATCTTGAAAAGATTCTATATTGATTAAGATTCCCATATT
Right flanking sequence: Indices 360393 -- 360892
TAATAGGTTCCATTGATTCATCTATTTCCAATAGGGGCGGGCAAATACGTTTCCGGCCCTGCCCC
CTTAATCAATAAGTAATTGATAGCGATGGTCAGCTGAGCTCGAATTGGCAGGGGTAGCCGGTCGT
CGGCTAGGGGCTCTGGCCGGCAACGAAGCTAAAGCTTCACACTGGTCCACTCGCAACTTACACCT
TTTTGGCGAAGCGATACCAGTTCCAACTATATGAATGAATGAAGAAGGGGGGTCTTGTGTTCCCT
TATCTATTGATTGAAAAGATCTATCTATTCAAAAGAACACTTCCAACTGTTCCAACATGAAGGGA
CAATTGCAATACTCCATATATAACCCCCTGTGTCTTGTTCTCGTCCTTATCACATTTTTGGGGTG
GGCGAATAGCGGTTTACGCCTCGTGCCCTCTGGTCTCAGATACCTGCAACTTTATCTGTAAGCGG
GGAACGCAGGGCAGGATGGACGAGAAAAGCGGCGAGAAGGAGACA
Found at i:366175 original size:19 final size:19
Alignment explanation
Indices: 366151--366188 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
366141 GCCCCCCCCG
* *
366151 GCCCTATTTGATTTATTAT
1 GCCCTATTTCATTCATTAT
366170 GCCCTATTTCATTCATTAT
1 GCCCTATTTCATTCATTAT
366189 TATTAGCGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.50
Consensus pattern (19 bp):
GCCCTATTTCATTCATTAT
Left flanking sequence: Indices 365651 -- 366150
GCCCGGAGGGGTTTACTGCACAAAAAGGCCCGGGGACGCTGGCTCCCGCAGAGGGAAGCCCAACG
AATGTCAGATGCAAAGCTCCGCACCTCATTAAGATCATATTGGCATACTCCCCTGGGGAGAAAGG
AGCAGACCCCATTGAAGACGGGAGTAAGGTACAACAAGGCCATTTCCGTCCACCGCCCTTCTCAC
AGAGCCGTACGTGGACGTTACCGCTCATACAGCTCCCAGCCAGCAGTCAGCCCCTACAAGAGAGA
AAAGTGTGAATGAATCGACAAAAAATCGAAGAGTGAACATGAATTTGGTTTTTCAGCAATAGCAT
GAGAAGAGCATCCCTGTAACAAAAACCTAAGGATCCCCCCCTTTGGAGTAGAAGGGAGCTTCGTT
ATATCCGAGGGGGGGGGTGAAGGTATTGATCTGGATAGCTCATAAATCCAATTTTGTTAATAATA
AAAGCCCTTCGCTGCGCTTTTTGTTAATAAGAAAAGCCCCCCCCG
Right flanking sequence: Indices 366189 -- 366688
TATTAGCGCTTCGTTCATCTTCTCGGGGGGTGAAGGGAAAGGTTTACATAATTTGATCCTCTTTC
TATCACTATTTATACTCTGTCAATAACGACGATAAAAAGAGATTTTCGCATTATTCATGATATAA
CGATAACACTGTGTCATTCTTCAGATCCTCACCTTCGCCTTCAATGAAATAGGGAAAGAAATAAG
GCCTGTTAGCATGCCACTGCCTGCTGTCAAATCATTGTGTTCGAGACATCCCCCTTTTTACTAGG
AATTAATAGGGGAGGCAGGCCTAAATAAGAGCCTTTCTGAACCCACTATGCAGCGAGGGTGAACG
GAGAGCACGATTGACCAGTTAGCACACCACAGCTTTTCAATTCCACCAGTGTTAAGGACGGAGCT
GTAATAATGAGTAAGAGGAACTTCGAAATCATAGTATCCGGAGCTATTAATCAATATGGGAATCT
TTTCAAGATTCAAAAACTAGTTTGTTCAAAATAACTAAACCAAGA
Found at i:366988 original size:22 final size:22
Alignment explanation
Indices: 366953--367006 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
366943 ATAACTGGAT
366953 TCGGGAA--ATAGATGGCACTA
1 TCGGGAATCATAGATGGCACTA
366973 TCGGGAATCATAGATGGCACTA
1 TCGGGAATCATAGATGGCACTA
*
366995 TTGGGAATCATA
1 TCGGGAATCATA
367007 ATAAGATAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.23
22 24 0.77
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (22 bp):
TCGGGAATCATAGATGGCACTA
Left flanking sequence: Indices 366453 -- 366952
AATAGGGGAGGCAGGCCTAAATAAGAGCCTTTCTGAACCCACTATGCAGCGAGGGTGAACGGAGA
GCACGATTGACCAGTTAGCACACCACAGCTTTTCAATTCCACCAGTGTTAAGGACGGAGCTGTAA
TAATGAGTAAGAGGAACTTCGAAATCATAGTATCCGGAGCTATTAATCAATATGGGAATCTTTTC
AAGATTCAAAAACTAGTTTGTTCAAAATAACTAAACCAAGACATATACCATGCAAATGCTCTTGA
AGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATT
CTAAGATGGGTTTCTAGATAGATCATAGATCGGCCTGCTATTCCCTTTCAATGCCATAGAGTGGC
CATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAACCTTTATAGGAGCCTTAATACCAGA
TCCACACTCTATTAATGACAGAAGTGATCCGGAAAATAACTGGAT
Right flanking sequence: Indices 367007 -- 367506
ATAAGATAGGGTGGATATATAATAAGATTGGGTAGATATAGACTGCACCCATAAGAGATACAAGC
AATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAGCGAAGGGAAGGCACGGGCCACTATCCT
AAGACACAAGTTATATACACTAATCTAGAAACAGGCACCAGGCCATCACTATGCTGGCCGGCCCC
TTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCT
TCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTT
CCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTATAGACGGGGCATGGCCACTGCTCCGTC
TATAGATCTTGTTTCCTCTATAGACGGAGCAATCAGGAGGAGCCTCTCTTAGATCCAAGATCGGA
TCCCCCTATATAAGAGCCTTTATTAGGTCCAAAATAGTTCGGATC
Found at i:367030 original size:21 final size:21
Alignment explanation
Indices: 367004--367046 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
366994 ATTGGGAATC
*
367004 ATAATAAGATAGGGTGGATAT
1 ATAATAAGATAGGGTAGATAT
*
367025 ATAATAAGATTGGGTAGATAT
1 ATAATAAGATAGGGTAGATAT
367046 A
1 A
367047 GACTGCACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.30
Consensus pattern (21 bp):
ATAATAAGATAGGGTAGATAT
Left flanking sequence: Indices 366504 -- 367003
AGGGTGAACGGAGAGCACGATTGACCAGTTAGCACACCACAGCTTTTCAATTCCACCAGTGTTAA
GGACGGAGCTGTAATAATGAGTAAGAGGAACTTCGAAATCATAGTATCCGGAGCTATTAATCAAT
ATGGGAATCTTTTCAAGATTCAAAAACTAGTTTGTTCAAAATAACTAAACCAAGACATATACCAT
GCAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGG
GCCAGGCCACTATTCTAAGATGGGTTTCTAGATAGATCATAGATCGGCCTGCTATTCCCTTTCAA
TGCCATAGAGTGGCCATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAACCTTTATAGGA
GCCTTAATACCAGATCCACACTCTATTAATGACAGAAGTGATCCGGAAAATAACTGGATTCGGGA
AATAGATGGCACTATCGGGAATCATAGATGGCACTATTGGGAATC
Right flanking sequence: Indices 367047 -- 367546
GACTGCACCCATAAGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCGTAGCG
AAGGGAAGGCACGGGCCACTATCCTAAGACACAAGTTATATACACTAATCTAGAAACAGGCACCA
GGCCATCACTATGCTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTC
GCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCG
CTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGTTTACCCTACACTATA
GACGGGGCATGGCCACTGCTCCGTCTATAGATCTTGTTTCCTCTATAGACGGAGCAATCAGGAGG
AGCCTCTCTTAGATCCAAGATCGGATCCCCCTATATAAGAGCCTTTATTAGGTCCAAAATAGTTC
GGATCCATCTAAGTTCAGGGAAGATCTATAGCATAGAAGAGCTCG
Found at i:367241 original size:32 final size:32
Alignment explanation
Indices: 367200--367355 Score: 312
Period size: 32 Copynumber: 4.9 Consensus size: 32
367190 CTGGCCGGCC
367200 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
367232 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
367264 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
367296 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
367328 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
367356 TTTACCCTAC
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 124 1.00
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 366700 -- 367199
CAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGG
CCAGGCCACTATTCTAAGATGGGTTTCTAGATAGATCATAGATCGGCCTGCTATTCCCTTTCAAT
GCCATAGAGTGGCCATATCCTATTCTAAGATAGAGAACGATCCGAGCCAAGAACCTTTATAGGAG
CCTTAATACCAGATCCACACTCTATTAATGACAGAAGTGATCCGGAAAATAACTGGATTCGGGAA
ATAGATGGCACTATCGGGAATCATAGATGGCACTATTGGGAATCATAATAAGATAGGGTGGATAT
ATAATAAGATTGGGTAGATATAGACTGCACCCATAAGAGATACAAGCAATATATCCAGGTTAACC
CATAGTTTTACTCCGCGTAGCGAAGGGAAGGCACGGGCCACTATCCTAAGACACAAGTTATATAC
ACTAATCTAGAAACAGGCACCAGGCCATCACTATGCTGGCCGGCC
Right flanking sequence: Indices 367356 -- 367855
TTTACCCTACACTATAGACGGGGCATGGCCACTGCTCCGTCTATAGATCTTGTTTCCTCTATAGA
CGGAGCAATCAGGAGGAGCCTCTCTTAGATCCAAGATCGGATCCCCCTATATAAGAGCCTTTATT
AGGTCCAAAATAGTTCGGATCCATCTAAGTTCAGGGAAGATCTATAGCATAGAAGAGCTCGGATC
CATCTAATACAAATCAAGACAAGGGCAATAAATACCATAGAGCCTACAACAGAGATCTAGCACTA
ATCACATCCCTATGAATTAGGATGTTCCCTATGAATCAGGATCAGGGCCTGATCACTATGGCTAT
TCACATTGATTAGGATCAAGGATCTAATCGCTAATTCATAGTTGCTATGGCATTTAGATCCAAGC
CGGTTAGAAAGATCAAGCATATATTAGAATCTAGAATCGAATTCATATTACAGTTATTTCTTCTA
ATTTAGGGAATATATCGCAATTAGAATCTAATCACTATCCTATGA
Found at i:368061 original size:26 final size:26
Alignment explanation
Indices: 368031--368081 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
368021 GATCCATCTA
*
368031 GATCAAAA-AGAATCGAAATCGATATT
1 GATCAAAATA-AATCAAAATCGATATT
368057 GATCAAAATAAATCAAAATCGATAT
1 GATCAAAATAAATCAAAATCGATAT
368082 AATAGGATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (26 bp):
GATCAAAATAAATCAAAATCGATATT
Left flanking sequence: Indices 367531 -- 368030
AGCATAGAAGAGCTCGGATCCATCTAATACAAATCAAGACAAGGGCAATAAATACCATAGAGCCT
ACAACAGAGATCTAGCACTAATCACATCCCTATGAATTAGGATGTTCCCTATGAATCAGGATCAG
GGCCTGATCACTATGGCTATTCACATTGATTAGGATCAAGGATCTAATCGCTAATTCATAGTTGC
TATGGCATTTAGATCCAAGCCGGTTAGAAAGATCAAGCATATATTAGAATCTAGAATCGAATTCA
TATTACAGTTATTTCTTCTAATTTAGGGAATATATCGCAATTAGAATCTAATCACTATCCTATGA
ATCAGGATCAGGGCCTGATCACTATGGCTATTCACATATTCACATCCCTTAGGATCAAGGATCTA
ATCGCTAATTCATAGTTGCTATGGCATTTAGATCCAAGCCGGTTCGAAAGATCAAGTATTTATTA
TAATTGAGTGAATATCTATATAATAGAATAGTTCGGATCCATCTA
Right flanking sequence: Indices 368082 -- 368581
AATAGGATCTAATCACTATTCATCTAAGACAAATCATGATAGAAGCAATCTATACCATAGGGCCT
ACAACAGAGATCTAGTTCGGATCCCTATGAATTAGGATGTTCCCTATGAATCAGGATCAGGGCCT
GATCACTATGGCTATTCACATATTCACATTGATTCGAATCAATAATCTAATGAATATTCTTAGTA
TTGATTAAGATCCAAGCCGGTTAGAAAGATCAAGCATAGATTAGAATCATCACCTGATTCATCTA
ATACAAATCAAGACAAGGGCAATAGAATACCATAGAGCCTACAACAGAGATCTAGCACTAATCAC
ATCCCTATGAATTAGGATGTTCCCTATGAATCAGGATCAGGGCCTGATCACTATGGCTATTCACA
TCCCTTAGGATCAAGGATCTAATCGCTAATTCATAATTGCTATGGCATTTAGATAGTGTCCAAGC
ATTGATTAGATCAAGCCGGTTCGAAAGAATCAAGGATCTAATCAC
Found at i:375460 original size:37 final size:37
Alignment explanation
Indices: 375330--375445 Score: 200
Period size: 37 Copynumber: 3.2 Consensus size: 37
375320 CCACTATCAT
* *
375330 GATTCTAAGAAATAACTGAGATATGAATTCGATTATA
1 GATTCTAAGAAATAACTTAAATATGAATTCGATTATA
375367 GATTCTAAGAAATAACTTAAATATGAATTCGATTATA
1 GATTCTAAGAAATAACTTAAATATGAATTCGATTATA
375404 GATTCTAAGAAATAACTTAAATATGAATTCGA-T-TA
1 GATTCTAAGAAATAACTTAAATATGAATTCGATTATA
375439 GATTCTA
1 GATTCTA
375446 TAGATATTCC
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
35 9 0.12
36 1 0.01
37 67 0.87
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (37 bp):
GATTCTAAGAAATAACTTAAATATGAATTCGATTATA
Left flanking sequence: Indices 374830 -- 375329
CATCAGTCGATCCCGACGTGAAAAGCCATCAGGTCCATCTTCTAGGTGAAAGGGTGAAAAGCCTC
CTTCATCGTCTTGAACCTCAATAATAAGAATCGTGCATTTGAGTGAAAGTGGCTAGCCAGAAAGA
TTTAGTGAGAGATCTTGTTGAAATGCCCAATCGCAGTTTCTTCAATTTTGCGCGAAATGCCTATA
ACCACTGTGAAAGCGGGTTCCTTTCCCGGAGGAAATCTTCGATTCTTTTTCCCTACTTTAGTGAG
AGAAGTGACCCTCGGCTTTTGCTTCCCAACTTTCAGCTTCTTAATCATTGGAAGAAAAAGGGGGG
GGTTATTAATGATTGGCGAAGGTCTCCATGAGGGTGGCGGGGCGAACAGGTAGGTTTTGTTCCGA
TTGATCGATGGCCCGGGCTGTTTGGTCAAATTGTTAATTAGCTCTGGGGCTTAGATAAATAAATA
ATTAATAGGGGCAGTTATATAATCAAGGAGATAGGCCACTATCAT
Right flanking sequence: Indices 375446 -- 375945
TAGATATTCCCTTAATTTAGATGGATCCGAACTATTCTATTCTCTTGAATCTAATCAATGCTCCT
CCTGATTGCTCCGTCTATAGAGGAAACAAGATCTATAGACGGAGCAGTGGCCATGCCCCGTCTAT
AGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGA
AGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAA
GGGAAGGGCCTGATCCAATAGTGATCTTACTGTTGCATTTATCGAGATGACACTATCTTAGTCAG
GGATCCGGCACTATCACTATCGTGGATCTAATACTAAATGCCATGCGATAGGATATAGTATGGAT
CCGATCAGTCTATAGTGTAGACATCCACCCTATCTTAGAATAGTGGCCTGGCTCCTGATAGTGCC
ATCTATGATTGTGGGCATAGTGCATAGACAGTGGCCGGCTACTGT
Found at i:375625 original size:32 final size:32
Alignment explanation
Indices: 375589--375712 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
375579 GTAGGGTAAA
375589 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
375621 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
375653 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
375685 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
375713 GCCTGATCCA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 375089 -- 375588
GAGAAGTGACCCTCGGCTTTTGCTTCCCAACTTTCAGCTTCTTAATCATTGGAAGAAAAAGGGGG
GGGTTATTAATGATTGGCGAAGGTCTCCATGAGGGTGGCGGGGCGAACAGGTAGGTTTTGTTCCG
ATTGATCGATGGCCCGGGCTGTTTGGTCAAATTGTTAATTAGCTCTGGGGCTTAGATAAATAAAT
AATTAATAGGGGCAGTTATATAATCAAGGAGATAGGCCACTATCATGATTCTAAGAAATAACTGA
GATATGAATTCGATTATAGATTCTAAGAAATAACTTAAATATGAATTCGATTATAGATTCTAAGA
AATAACTTAAATATGAATTCGATTAGATTCTATAGATATTCCCTTAATTTAGATGGATCCGAACT
ATTCTATTCTCTTGAATCTAATCAATGCTCCTCCTGATTGCTCCGTCTATAGAGGAAACAAGATC
TATAGACGGAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 375713 -- 376212
GCCTGATCCAATAGTGATCTTACTGTTGCATTTATCGAGATGACACTATCTTAGTCAGGGATCCG
GCACTATCACTATCGTGGATCTAATACTAAATGCCATGCGATAGGATATAGTATGGATCCGATCA
GTCTATAGTGTAGACATCCACCCTATCTTAGAATAGTGGCCTGGCTCCTGATAGTGCCATCTATG
ATTGTGGGCATAGTGCATAGACAGTGGCCGGCTACTGTCTATGCACTACGCCACATCCACCCTAT
AACAGCAAGGGCCATCCACTTTATATGTCACTGCATGCTCCACTATTATAGTATGATCCCCAGTT
AATAGTGCCCTCTCCTGAGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCCGCGT
AGCGAAGAGAAGGGGCCGGCCAATCTGTGATGGCCTGTATTGCTATACAATAGCCATACATCTAC
CCTATCTTCAGGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGG
Found at i:376698 original size:21 final size:21
Alignment explanation
Indices: 376673--376715 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
376663 GGGTGCAGTC
*
376673 TATATCTACCCAATCTTATTA
1 TATATCCACCCAATCTTATTA
*
376694 TATATCCACCCTATCTTATTA
1 TATATCCACCCAATCTTATTA
376715 T
1 T
376716 GATTCCCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.00, T:0.44
Consensus pattern (21 bp):
TATATCCACCCAATCTTATTA
Left flanking sequence: Indices 376173 -- 376672
CTTCAGGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTA
TGGGCCCCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATCACTTCTGTCATTAATAG
AGTGTGGATCTGGTATTAAGGCTCCTATAAAGGTTCTTGGCTCGGATCGTTCTCTATCTTAGAAT
AGGATATGGCCACTATATGGCATTGAAAGGGAATAGCAGGCCGATCTATGATCTATCTATTCACC
CTATCTTAGAATAGTGGCTGATCCTAATATATGGCGTATCTATCGCTTCTAGAGTGATATCCACC
CTATCTTCTTTCTTCAGGGGCTGGCCACTCTTATAATATATGGCTTGGTGCCTGCTTATAGATTA
GTGTATATAACCTGTGCCTTAGAATAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTA
TGGGTTAACCTGGATATATTGCTTGTATCTCTTATGGGTGCAGTC
Right flanking sequence: Indices 376716 -- 377215
GATTCCCAATCCAGTCCGATTACCGAATCCAGTCCGGTTACCGGATCCTTATTCATCAATTCTAG
TGGTGGATTTGGTATAGGCTCGTATCTTGACCTGTAGCCACCCATCTTAGAGCATTAGAACATAT
ATAACCACATTCTTTTTGTCTAGTTTTTTTTAATTCTTCGAATTTATAAGGGTATATATTCCCTA
AATCCTAATAAAGACTAAGAATAGTCATTATATTCGATTCGATAGATATTACCTAAATACTAAGA
AATCCTTGATCTAATCAATACTTGGACACTATCTAAATGTCATAGCAACTATGAATTAGCGATTA
GATCCTTGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATTCTAATACATAGGGAA
CATCCTAATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGC
TTCTATCTTGATTTAGCCATAGTGATCAGGCCCTGGATTCTAATA
Found at i:376746 original size:18 final size:18
Alignment explanation
Indices: 376723--376763 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
376713 TATGATTCCC
376723 AATCCAGTCCGATTACCG
1 AATCCAGTCCGATTACCG
*
376741 AATCCAGTCCGGTTACCG
1 AATCCAGTCCGATTACCG
*
376759 GATCC
1 AATCC
376764 TTATTCATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (18 bp):
AATCCAGTCCGATTACCG
Left flanking sequence: Indices 376223 -- 376722
TATGCATATACACTATGGGCCCCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATCAC
TTCTGTCATTAATAGAGTGTGGATCTGGTATTAAGGCTCCTATAAAGGTTCTTGGCTCGGATCGT
TCTCTATCTTAGAATAGGATATGGCCACTATATGGCATTGAAAGGGAATAGCAGGCCGATCTATG
ATCTATCTATTCACCCTATCTTAGAATAGTGGCTGATCCTAATATATGGCGTATCTATCGCTTCT
AGAGTGATATCCACCCTATCTTCTTTCTTCAGGGGCTGGCCACTCTTATAATATATGGCTTGGTG
CCTGCTTATAGATTAGTGTATATAACCTGTGCCTTAGAATAGTGGCCCGTGCCTTCCCTTCGCTA
CGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTATCTCTTATGGGTGCAGTCTATAT
CTACCCAATCTTATTATATATCCACCCTATCTTATTATGATTCCC
Right flanking sequence: Indices 376764 -- 377263
TTATTCATCAATTCTAGTGGTGGATTTGGTATAGGCTCGTATCTTGACCTGTAGCCACCCATCTT
AGAGCATTAGAACATATATAACCACATTCTTTTTGTCTAGTTTTTTTTAATTCTTCGAATTTATA
AGGGTATATATTCCCTAAATCCTAATAAAGACTAAGAATAGTCATTATATTCGATTCGATAGATA
TTACCTAAATACTAAGAAATCCTTGATCTAATCAATACTTGGACACTATCTAAATGTCATAGCAA
CTATGAATTAGCGATTAGATCCTTGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGA
TTCTAATACATAGGGAACATCCTAATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGC
CCTATGGTATAGATTGCTTCTATCTTGATTTAGCCATAGTGATCAGGCCCTGGATTCTAATATCT
ATTGCAATTCTAATAGTGATTAGATCCTTGATCCTAATAAATACG
Found at i:378001 original size:26 final size:27
Alignment explanation
Indices: 377971--378024 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
377961 AGATCTTATT
377971 AGATCGATTTTGATTT-ATTTTGATCA
1 AGATCGATTTTGATTTCATTTTGATCA
*
377997 AGATCGATTTTGATTTCTTTTTGATCA
1 AGATCGATTTTGATTTCATTTTGATCA
378024 A
1 A
378025 TATCTCTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (27 bp):
AGATCGATTTTGATTTCATTTTGATCA
Left flanking sequence: Indices 377471 -- 377970
TTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTTGATTTGTATTAGAT
GAATCAGGTGATGATTCTAATATATATTGCAATTAGAATTCAGTGATCAGGCCCTGGATTCTAAT
CGATACTAAGAAATGAATTAGATCCTTGATTCTAACAACCGGCTAATAATATTAATCAGGTGATG
ATTCTAAATGCCATTGCAATTATTCATTAGCGATTAGATCCTTGATTCTAACATAGTTATAGGCC
TGATCTAATCAATGCTTGGACACTACCTTAATCAATGTGAATATGTGAATAGCCATAGCGATTAG
ATCCTTGATTCGAATCAATTCAATATTGAATAGCCATTTGATCCTTGATTCTAATGCATAGGGAA
CATCCTAATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTG
CTTCTATCTTGATTTGTCTTAGATGAATAGTGATTAGATCTTATT
Right flanking sequence: Indices 378025 -- 378524
TATCTCTTTCGATTTTTTTTTATCTAGATGGATCCGAGCTCTTCTATGCTATAGCATTTAACATA
TCTTCGATTTGTAGTCTTTGAATCTTGAAAAGATTCTACTCTTTTTTCCCATATTTCTGAATCTG
GTGAGTGCCCCGGCCGCCGCCGGCTCTACGCACCACTGGGGTCCGGTTCGAAGATATCTCTCGAA
CGAAGTGATAGGAAGAGGACACTCGGCGCTGGCGGGAGAGTTCTTATCTCTTTATTACACCCTTT
CGGGATCAAAAGGCGGATATAGATTGAAGTAGTAAATCATCTGCCCGCCAATAAAGCAGCAGAGG
ATATGGGTCCGATTCCCGTTACACGCGATGTGGTTAAAAAGACCGATTCAACGAAATATGCCTGC
ATCAGGATCCAAAACTTGTCGTCCACTTTCAGGAAATGTTCGGAACAAAAAACTTACAAGAATAC
AACGCCGCATTCCCCGAAGATTGAGGAGCAAGAGAAGATCTATTA
Found at i:378038 original size:27 final size:27
Alignment explanation
Indices: 377971--378053 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 27
377961 AGATCTTATT
* *
377971 AGATCGATTTTGATTT-ATTTTGATCA
1 AGATCGATTTCGATTTCTTTTTGATCA
*
377997 AGATCGATTTTGATTTCTTTTTGATCA
1 AGATCGATTTCGATTTCTTTTTGATCA
* ** * *
378024 ATATCTCTTTCGATTT-TTTTTTATCT
1 AGATCGATTTCGATTTCTTTTTGATCA
378050 AGAT
1 AGAT
378054 GGATCCGAGC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 27 0.56
27 21 0.44
ACGTcount: A:0.23, C:0.11, G:0.12, T:0.54
Consensus pattern (27 bp):
AGATCGATTTCGATTTCTTTTTGATCA
Left flanking sequence: Indices 377471 -- 377970
TTAGTGCTAGATCTCTGTTGTAGGCCCTATGGTATAGATTGCTTCTATCTTGATTTGTATTAGAT
GAATCAGGTGATGATTCTAATATATATTGCAATTAGAATTCAGTGATCAGGCCCTGGATTCTAAT
CGATACTAAGAAATGAATTAGATCCTTGATTCTAACAACCGGCTAATAATATTAATCAGGTGATG
ATTCTAAATGCCATTGCAATTATTCATTAGCGATTAGATCCTTGATTCTAACATAGTTATAGGCC
TGATCTAATCAATGCTTGGACACTACCTTAATCAATGTGAATATGTGAATAGCCATAGCGATTAG
ATCCTTGATTCGAATCAATTCAATATTGAATAGCCATTTGATCCTTGATTCTAATGCATAGGGAA
CATCCTAATTCATAGGGATGTGATTAGTGCTAGATCTCTGTTGTAGGCTCTATGGTATTCTATTG
CTTCTATCTTGATTTGTCTTAGATGAATAGTGATTAGATCTTATT
Right flanking sequence: Indices 378054 -- 378553
GGATCCGAGCTCTTCTATGCTATAGCATTTAACATATCTTCGATTTGTAGTCTTTGAATCTTGAA
AAGATTCTACTCTTTTTTCCCATATTTCTGAATCTGGTGAGTGCCCCGGCCGCCGCCGGCTCTAC
GCACCACTGGGGTCCGGTTCGAAGATATCTCTCGAACGAAGTGATAGGAAGAGGACACTCGGCGC
TGGCGGGAGAGTTCTTATCTCTTTATTACACCCTTTCGGGATCAAAAGGCGGATATAGATTGAAG
TAGTAAATCATCTGCCCGCCAATAAAGCAGCAGAGGATATGGGTCCGATTCCCGTTACACGCGAT
GTGGTTAAAAAGACCGATTCAACGAAATATGCCTGCATCAGGATCCAAAACTTGTCGTCCACTTT
CAGGAAATGTTCGGAACAAAAAACTTACAAGAATACAACGCCGCATTCCCCGAAGATTGAGGAGC
AAGAGAAGATCTATTAAGAAGAATATTTATCCGAGACAAAATCTT
Found at i:380463 original size:32 final size:32
Alignment explanation
Indices: 380427--380614 Score: 376
Period size: 32 Copynumber: 5.9 Consensus size: 32
380417 GTAGGGTAAA
380427 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
380459 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
380491 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
380523 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
380555 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
380587 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
380615 GGCCGGCCAG
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 156 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 379927 -- 380426
AGAACTAAAGGAGCTTGCCAGGAAAGAATCAATTCTCTTTCTTTTTTAATAACAACAATAGTTCA
CTCTTTTTTAATCACATATTCTAAATAGAGTTCTTTATAGACTGCAGCCTTCAATATGTTTTTTA
GTGCCATCTATCTTTTTTTCAATAGGAGAATCCCTTTCCTGAGCATAGCGAAGGGAAGAGGCCGG
GCCACCCTGCAGGCTTCAGTAGTTTGTTCCTTTCTCTTCCCGATCTTCTCCGGTTCTTTTTAATA
TTAATAGGCTCATGATTCTAACAACCGGCTAAGAATATGGATCCGAGCTATTCTATGCTCTAGAT
ATTCCCTAAATCCTAACATAGTTATAGGCCTGATCTAAATGCCATAGCAACTATGAATTAGCGAT
TAGATCCTTGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATCCTGATTACTACAA
CAGAGATCTAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 380615 -- 381114
GGCCGGCCAGCATAGTGATGGCCCGTGGCCTGGGGTGCAGTGTGCAACCCCATAATAAGAAGAGT
GGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAACTATGGGTTAACCTGGATATATTGCTTGTAT
CTCCTTGTGGGTGCAGTCTATATAGTATAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATC
TTATTAGGATTCCCAATAGTGCCATCTATGATTCCCGATAGTGCCATCTATTTACTGATAGTGCC
ATCCACCTGAATCCAATAGAATAGTAATGCATAGTATGGATCCGATCTATGATCTATAGTATATA
GAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTTGATATCCAC
CCTATCTTCTTTATTCAAGAGCATTTGCATGGTATATGGCTTTGAATCTTGTCTAGTTTTTGAAT
CTTGAAGAGATTCTATGTATTAATATTCCCATATTTATTATATGC
Found at i:380845 original size:22 final size:22
Alignment explanation
Indices: 380817--380860 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
380807 ATCTTATTAG
380817 GATTCCCAATAGTGCCATCTAT
1 GATTCCCAATAGTGCCATCTAT
*
380839 GATTCCCGATAGTGCCATCTAT
1 GATTCCCAATAGTGCCATCTAT
380861 TTACTGATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (22 bp):
GATTCCCAATAGTGCCATCTAT
Left flanking sequence: Indices 380317 -- 380816
TAGATCCTTGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATCCTGATTACTACAA
CAGAGATCTAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGA
AGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAA
GGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAG
GGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCATAGTGATGGCCCGTG
GCCTGGGGTGCAGTGTGCAACCCCATAATAAGAAGAGTGGCCCGTGCCTTCCCTTCGCTACGCGG
AGTAAAACTATGGGTTAACCTGGATATATTGCTTGTATCTCCTTGTGGGTGCAGTCTATATAGTA
TAGAGCAGTGCCCATCCTATTGCCACATCCACCCTATCTTATTAG
Right flanking sequence: Indices 380861 -- 381360
TTACTGATAGTGCCATCCACCTGAATCCAATAGAATAGTAATGCATAGTATGGATCCGATCTATG
ATCTATAGTATATAGAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCT
ATCTTGATATCCACCCTATCTTCTTTATTCAAGAGCATTTGCATGGTATATGGCTTTGAATCTTG
TCTAGTTTTTGAATCTTGAAGAGATTCTATGTATTAATATTCCCATATTTATTATATGCAGCAGC
CGCACCCGATTCAATTTATGTTACGACGACCGATTCGGTCCTTTGAGGCATTAGAACTGACTGTG
CTTCCACGAGCTTTAGAGGGACCGAAATGGATGAGGAACTGGTGGCAGTTCACGACCCACACACA
CGCTATCGACCATCGACTTTTTATGCCTTTACAATAGGAATAGTAATAATAAGCCGAGGGTATCG
AAAGAATTGAATTGCAACGGGTTCAGTTTGCCACTTCTATGGCCC
Found at i:380871 original size:20 final size:21
Alignment explanation
Indices: 380825--380877 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
380815 AGGATTCCCA
*
380825 ATAGTGCCATCTATGATTCCCG
1 ATAGTGCCATCTAT-ATTACCG
*
380847 ATAGTGCCATCTAT-TTACTG
1 ATAGTGCCATCTATATTACCG
380867 ATAGTGCCATC
1 ATAGTGCCATC
380878 CACCTGAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 15 0.52
22 14 0.48
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (21 bp):
ATAGTGCCATCTATATTACCG
Left flanking sequence: Indices 380325 -- 380824
TGATCCTAAGGGATGTGAATAGCCATAGTGATCAGGCCCTGATCCTGATTACTACAACAGAGATC
TAGCAGTGGCCATGCCCCGTCTATAGTGTAGGGTAAACCCTTTCCTGAGCGTAGCGAAGGGAAGG
TTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGT
TATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTT
ATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCATAGTGATGGCCCGTGGCCTGGGG
TGCAGTGTGCAACCCCATAATAAGAAGAGTGGCCCGTGCCTTCCCTTCGCTACGCGGAGTAAAAC
TATGGGTTAACCTGGATATATTGCTTGTATCTCCTTGTGGGTGCAGTCTATATAGTATAGAGCAG
TGCCCATCCTATTGCCACATCCACCCTATCTTATTAGGATTCCCA
Right flanking sequence: Indices 380878 -- 381377
CACCTGAATCCAATAGAATAGTAATGCATAGTATGGATCCGATCTATGATCTATAGTATATAGAA
ACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTTGATATCCACCCT
ATCTTCTTTATTCAAGAGCATTTGCATGGTATATGGCTTTGAATCTTGTCTAGTTTTTGAATCTT
GAAGAGATTCTATGTATTAATATTCCCATATTTATTATATGCAGCAGCCGCACCCGATTCAATTT
ATGTTACGACGACCGATTCGGTCCTTTGAGGCATTAGAACTGACTGTGCTTCCACGAGCTTTAGA
GGGACCGAAATGGATGAGGAACTGGTGGCAGTTCACGACCCACACACACGCTATCGACCATCGAC
TTTTTATGCCTTTACAATAGGAATAGTAATAATAAGCCGAGGGTATCGAAAGAATTGAATTGCAA
CGGGTTCAGTTTGCCACTTCTATGGCCCTTTCGTGCCGGGCGTTT
Found at i:388301 original size:18 final size:18
Alignment explanation
Indices: 388278--388344 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 18
388268 GAACGTATTC
388278 ATCAATATGGGAATCTTA
1 ATCAATATGGGAATCTTA
388296 ATCAATA-GGAGAATCTTCATCA
1 ATCAATATGG-GAATC-T--T-A
*
388318 ATAGAATATGGGAATCTTA
1 AT-CAATATGGGAATCTTA
388337 ATCAATAT
1 ATCAATAT
388345 AGAATCTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
17 2 0.05
18 17 0.43
19 4 0.10
20 1 0.03
21 1 0.03
22 4 0.10
23 9 0.22
24 2 0.05
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (18 bp):
ATCAATATGGGAATCTTA
Left flanking sequence: Indices 387778 -- 388277
CCCGGCCCCCTAAGGTTTAGGGCTCGTAGCAGGGTGACTCTTTTCTCGAAAAGAAACCCCGGACC
CCCAGAGGACCGAGGGGGGAACCCTTCTTTTCCGAAGTTTCTTTCCTCTGTGGGTGATTCCTTCC
CCCAGGGGAATTCCGGAGTTTATCTCCTCCTTCCGGAACCACCCTCACCCTGAAGCTCCTTCCAG
AATCACTCTCTTTATCCATCTATTAAGGGGCCCTGAATCCCCCCCCATGAATCACCCTGCTACAA
GCCTTTTCCTTCCCGCGCCCCTCTGATATTGACACAGGGTGAGAGCCACCACTTCGGGGAATAGC
CCAACCCGTTTACCCCTACTCCACTTTATTCGTTTCACGGAAGTGAAGCGGGCTACCCACTCCGT
GGCGCTCGGGTATAACCCGAGCGAAGCTTTGGGCACTTTATTTTCAGTTGCTCTTGTCAGGTTTT
GTCGGGTCCGGGGGGATGCCTCCTCTCCCTTCCTCGAACGTATTC
Right flanking sequence: Indices 388345 -- 388844
AGAATCTTTTCAAGATTCAAAAACTAGTTTGTTCAAAATAACTAGACCAAGACATATACCATGCA
AATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCC
AGGCCACTATTCTAAGATGGGTTTATGTCTACACTACAAGCGGGGGGATACGAGCGAGATACCAG
ATCCACACTCTATTAATGACAGAAGTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGG
TGGGGCCCATAGTGTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATA
ACCCTGAAGATAAGATGGATATATACGAATCTATAAGCAGGCACCAGGCCATCACAGATTGGCCG
GCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGAT
AACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCG
Found at i:388779 original size:32 final size:32
Alignment explanation
Indices: 388738--388850 Score: 226
Period size: 32 Copynumber: 3.5 Consensus size: 32
388728 TTGGCCGGCC
388738 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
388770 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
388802 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
388834 CCTTCCCTTCGCTACGC
1 CCTTCCCTTCGCTACGC
388851 GGAGTAAAAC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 81 1.00
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 388238 -- 388737
GTCCGGGGGGATGCCTCCTCTCCCTTCCTCGAACGTATTCATCAATATGGGAATCTTAATCAATA
GGAGAATCTTCATCAATAGAATATGGGAATCTTAATCAATATAGAATCTTTTCAAGATTCAAAAA
CTAGTTTGTTCAAAATAACTAGACCAAGACATATACCATGCAAATGCTCTTGAAGAAAGAAGATA
GGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTT
TATGTCTACACTACAAGCGGGGGGATACGAGCGAGATACCAGATCCACACTCTATTAATGACAGA
AGTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGGTGGGGCCCATAGTGTATATGCAT
ATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAAGATAAGATGGATATA
TACGAATCTATAAGCAGGCACCAGGCCATCACAGATTGGCCGGCC
Right flanking sequence: Indices 388851 -- 389350
GGAGTAAAACTAATAGTGTGGGATCTACTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCTACT
TCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCCCCTTCCCTTCGCTACGCTCAGGAAA
GGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTTGGATCAGGCCCTTCCCTTCGCT
ACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTTCCCTTTGCTA
CGGGGCATGGCTATGAGATTAAGCCGGTTCGAAATAGTATTAGATCAAGTCTTTATTCTTAGATG
ATTACGGAGCCTTTATTCGATTCAATCAAATAGAAGAGTTCGGATCCATCTAAGTTAAGGTAATA
TATATATATAATAGGATATAATCACTATGGATCTAAACTACGACAAATCAAGATAGAAGCAATAG
AATAGTATAGAGACTATCGCAATTAGGATCTAATCACTATCCTAT
Found at i:388888 original size:43 final size:43
Alignment explanation
Indices: 388835--388972 Score: 182
Period size: 43 Copynumber: 3.4 Consensus size: 43
388825 AAGGGATAAC
388835 CTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCTA
1 CTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCTA
** *
388878 CTTCCCTTCGCTACGCTCAG--GAAC----AGTG-GGGATCTA
1 CTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCTA
**
388914 CTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCCC
1 CTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCTA
388957 CTTCCCTTCGCTACGC
1 CTTCCCTTCGCTACGC
388973 TCAGGAAAGG
Statistics
Matches: 80, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
36 26 0.32
37 4 0.05
38 3 0.04
41 3 0.04
42 4 0.05
43 40 0.50
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (43 bp):
CTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCTA
Left flanking sequence: Indices 388335 -- 388834
TAATCAATATAGAATCTTTTCAAGATTCAAAAACTAGTTTGTTCAAAATAACTAGACCAAGACAT
ATACCATGCAAATGCTCTTGAAGAAAGAAGATAGGGTGGATATCGAGATAGAAGCGACAGATGCA
TGGCCGGGCCAGGCCACTATTCTAAGATGGGTTTATGTCTACACTACAAGCGGGGGGATACGAGC
GAGATACCAGATCCACACTCTATTAATGACAGAAGTGATCCGGGAGCCCGGCCACTGCACTCTTG
CCAATAGTGGTGGGGCCCATAGTGTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAG
GAAAGGGATAACCCTGAAGATAAGATGGATATATACGAATCTATAAGCAGGCACCAGGCCATCAC
AGATTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCA
GGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
Right flanking sequence: Indices 388973 -- 389472
TCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTTGGATCAGGCCCTTC
CCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAACCTTCC
CTTTGCTACGGGGCATGGCTATGAGATTAAGCCGGTTCGAAATAGTATTAGATCAAGTCTTTATT
CTTAGATGATTACGGAGCCTTTATTCGATTCAATCAAATAGAAGAGTTCGGATCCATCTAAGTTA
AGGTAATATATATATATAATAGGATATAATCACTATGGATCTAAACTACGACAAATCAAGATAGA
AGCAATAGAATAGTATAGAGACTATCGCAATTAGGATCTAATCACTATCCTATTAATCAGGATCA
GGGCCTGATCACTGTCACTGTGCCTTTTATTCACATTGATTAGGATCAAGAATCTAATCGCTATG
GCTATTCACATTGATTAAGGTAGTATCCAAGCATTGATTAGATCA
Found at i:388936 original size:79 final size:75
Alignment explanation
Indices: 388803--389079 Score: 333
Period size: 79 Copynumber: 3.6 Consensus size: 75
388793 AAGGGATAAC
388803 CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGT
1 CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGT
*
388868 GTGGGATCTA
66 GTGGGATCCA
*
388878 CTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCTA-CTTCCCTTCGCTACGCGGAGTAAAACTA
1 CTTCCCTTCGCTACGCTCAGGAA-A---GGGAT-AACCTTCCCTTCGCTACGCGGAGTAAAACTA
*
388942 ATAGTGTGGGATCCC
61 ATAGTGTGGGATCCA
* ** * *** **
388957 CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAG-GAAAGGGATAAC
1 CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGT
* * *
389021 CTTGGATCAGGCC
66 GTGGGATC---CA
389034 CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTAC
1 CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTAC
389080 ACTCAGGAAA
Statistics
Matches: 178, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
74 13 0.07
75 45 0.25
76 1 0.01
77 48 0.27
78 1 0.01
79 69 0.39
80 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (75 bp):
CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCGGAGTAAAACTAATAGT
GTGGGATCCA
Left flanking sequence: Indices 388303 -- 388802
GGAGAATCTTCATCAATAGAATATGGGAATCTTAATCAATATAGAATCTTTTCAAGATTCAAAAA
CTAGTTTGTTCAAAATAACTAGACCAAGACATATACCATGCAAATGCTCTTGAAGAAAGAAGATA
GGGTGGATATCGAGATAGAAGCGACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTT
TATGTCTACACTACAAGCGGGGGGATACGAGCGAGATACCAGATCCACACTCTATTAATGACAGA
AGTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGGTGGGGCCCATAGTGTATATGCAT
ATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAAGATAAGATGGATATA
TACGAATCTATAAGCAGGCACCAGGCCATCACAGATTGGCCGGCCCCTTCCCTTCGCTACGCTCA
GGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAAC
Right flanking sequence: Indices 389080 -- 389579
ACTCAGGAAAGGGATAACCTTCCCTTTGCTACGGGGCATGGCTATGAGATTAAGCCGGTTCGAAA
TAGTATTAGATCAAGTCTTTATTCTTAGATGATTACGGAGCCTTTATTCGATTCAATCAAATAGA
AGAGTTCGGATCCATCTAAGTTAAGGTAATATATATATATAATAGGATATAATCACTATGGATCT
AAACTACGACAAATCAAGATAGAAGCAATAGAATAGTATAGAGACTATCGCAATTAGGATCTAAT
CACTATCCTATTAATCAGGATCAGGGCCTGATCACTGTCACTGTGCCTTTTATTCACATTGATTA
GGATCAAGAATCTAATCGCTATGGCTATTCACATTGATTAAGGTAGTATCCAAGCATTGATTAGA
TCAGACCTATAACTATGTTAGAATCTAGGATCTAATTCATTTCTTAGAGTGGCCGGCTCTCGAAC
CGGATCATGAGCCTATTCATATTCATTAGAATTGGAACGGGTGTG
Found at i:388992 original size:32 final size:32
Alignment explanation
Indices: 388956--389112 Score: 152
Period size: 32 Copynumber: 4.5 Consensus size: 32
388946 TGTGGGATCC
388956 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
388988 CCTTCCCTTCGCTACACTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
* *
389020 CCTTGGATCAGGCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CC-T---T----CCCTTCGCTACG-----CTCAGGAAAGGGATAA
*
389065 CCTTCCCTTCGCTACACTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
*
389097 CCTTCCCTTTGCTACG
1 CCTTCCCTTCGCTACG
389113 GGGCATGGCT
Statistics
Matches: 103, Mismatches: 9, Indels: 26
0.75 0.07 0.19
Matches are distributed among these distances:
32 63 0.61
33 1 0.01
36 1 0.01
37 9 0.09
40 9 0.09
41 1 0.01
44 1 0.01
45 18 0.17
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 388456 -- 388955
ACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTTTATGTCTACACTACAAGCGGGGG
GATACGAGCGAGATACCAGATCCACACTCTATTAATGACAGAAGTGATCCGGGAGCCCGGCCACT
GCACTCTTGCCAATAGTGGTGGGGCCCATAGTGTATATGCATATACAACATGCCCTTCCCTTCGT
TACACTCAGGAAAGGGATAACCCTGAAGATAAGATGGATATATACGAATCTATAAGCAGGCACCA
GGCCATCACAGATTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCG
CTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGC
TACGCGGAGTAAAACTAATAGTGTGGGATCTACTTCCCTTCGCTACGCTCAGGAACAGTGGGGAT
CTACTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATCC
Right flanking sequence: Indices 389113 -- 389612
GGGCATGGCTATGAGATTAAGCCGGTTCGAAATAGTATTAGATCAAGTCTTTATTCTTAGATGAT
TACGGAGCCTTTATTCGATTCAATCAAATAGAAGAGTTCGGATCCATCTAAGTTAAGGTAATATA
TATATATAATAGGATATAATCACTATGGATCTAAACTACGACAAATCAAGATAGAAGCAATAGAA
TAGTATAGAGACTATCGCAATTAGGATCTAATCACTATCCTATTAATCAGGATCAGGGCCTGATC
ACTGTCACTGTGCCTTTTATTCACATTGATTAGGATCAAGAATCTAATCGCTATGGCTATTCACA
TTGATTAAGGTAGTATCCAAGCATTGATTAGATCAGACCTATAACTATGTTAGAATCTAGGATCT
AATTCATTTCTTAGAGTGGCCGGCTCTCGAACCGGATCATGAGCCTATTCATATTCATTAGAATT
GGAACGGGTGTGTCTTCAAGATCCGAATAGCGAAAGGTTGGCTTT
Found at i:389054 original size:77 final size:77
Alignment explanation
Indices: 388955--389100 Score: 292
Period size: 77 Copynumber: 1.9 Consensus size: 77
388945 GTGTGGGATC
388955 CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAA
1 CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAA
389020 CCTTGGATCAGG
66 CCTTGGATCAGG
389032 CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAA
1 CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAA
389097 CCTT
66 CCTT
389101 CCCTTTGCTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 69 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (77 bp):
CCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACACTCAGGAAAGGGATAA
CCTTGGATCAGG
Left flanking sequence: Indices 388455 -- 388954
GACAGATGCATGGCCGGGCCAGGCCACTATTCTAAGATGGGTTTATGTCTACACTACAAGCGGGG
GGATACGAGCGAGATACCAGATCCACACTCTATTAATGACAGAAGTGATCCGGGAGCCCGGCCAC
TGCACTCTTGCCAATAGTGGTGGGGCCCATAGTGTATATGCATATACAACATGCCCTTCCCTTCG
TTACACTCAGGAAAGGGATAACCCTGAAGATAAGATGGATATATACGAATCTATAAGCAGGCACC
AGGCCATCACAGATTGGCCGGCCCCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTC
GCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCG
CTACGCGGAGTAAAACTAATAGTGTGGGATCTACTTCCCTTCGCTACGCTCAGGAACAGTGGGGA
TCTACTTCCCTTCGCTACGCGGAGTAAAACTAATAGTGTGGGATC
Right flanking sequence: Indices 389101 -- 389600
CCCTTTGCTACGGGGCATGGCTATGAGATTAAGCCGGTTCGAAATAGTATTAGATCAAGTCTTTA
TTCTTAGATGATTACGGAGCCTTTATTCGATTCAATCAAATAGAAGAGTTCGGATCCATCTAAGT
TAAGGTAATATATATATATAATAGGATATAATCACTATGGATCTAAACTACGACAAATCAAGATA
GAAGCAATAGAATAGTATAGAGACTATCGCAATTAGGATCTAATCACTATCCTATTAATCAGGAT
CAGGGCCTGATCACTGTCACTGTGCCTTTTATTCACATTGATTAGGATCAAGAATCTAATCGCTA
TGGCTATTCACATTGATTAAGGTAGTATCCAAGCATTGATTAGATCAGACCTATAACTATGTTAG
AATCTAGGATCTAATTCATTTCTTAGAGTGGCCGGCTCTCGAACCGGATCATGAGCCTATTCATA
TTCATTAGAATTGGAACGGGTGTGTCTTCAAGATCCGAATAGCGA
Found at i:393958 original size:32 final size:32
Alignment explanation
Indices: 393922--394045 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
393912 GTAGGGTAAA
393922 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
393954 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
393986 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
394018 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 CCCTTTCCTGAGCGTAGCGAAGGGAAGG
394046 GGCCGGCCAA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.22, C:0.23, G:0.32, T:0.23
Consensus pattern (32 bp):
CCCTTTCCTGAGCGTAGCGAAGGGAAGGTTAT
Left flanking sequence: Indices 393422 -- 393921
ACTCTGAATTCATGGGATCAACTGAAAAATGCACTTCAAAGGGAGGGAAGCTAGGTTTCCCCATC
ATGGTCCCCCCGGACCGGGTCTCGGGGGCGGGCCGGAATATTGATCTCCAAATTGGCACTCGTGT
TCTTCGTTCCTTTTCATTCCCTGTTCTCTATGGTTGGTTAGAACCTCGAGGGAATGTAATCCTCG
CCCTCCATATATATATGGCATTTGTTTGTGTCCCGAGATAGAATCAAGGAGATAGGCCACTATCA
TGATTCTAATGAAGAACTGAAATAGGGATACGAACTATTCTAATTGCAATATCTTCACTAAATTC
TTTCGAACCGGCTTGGCTTGGACACTACCTTAATCAATGTGAATAGCCATAGCGATTAGATCCTT
GATCCTAATCAATGTGAATAAAAGGCACAGTGACAGTGATCAGGCCCTGATCCTGATTACTACAA
CAGAGATCTAGCAGTGGTCATGCCCCGTCTATAGTGTAGGGTAAA
Right flanking sequence: Indices 394046 -- 394545
GGCCGGCCAATCTGTGATGGCCTGGTGCCTGCTTATAGATTCGTATATATCCACCTTATCTTCAG
GGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCC
CCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATCACTTCTGTCATTAATAGAGTGTG
GATCTGGTATCTCGCTCGTATCCCCTCGCCTGTAGTGTAGACATAAACCCATCTTAGAATAGTGG
CCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGC
ATTTGCATGGTATATGTCTTGGTTTAGTTATTTTGAACAAACTAGTTTTTGAATCTTGAAAAGAT
TCTATATTGATTAAGATTCCCATATTCTATTGATGAAGATTCTCCTATTGATTAAGATTCCCATA
TTGATGAATACGTTCGAGGAAGGGAGAGGAGGCATCCCCCCGGAC
Found at i:394466 original size:23 final size:23
Alignment explanation
Indices: 394440--394502 Score: 73
Period size: 18 Copynumber: 3.0 Consensus size: 23
394430 AAAGATTCTA
394440 TATTGATTAAGATTCCCATATTC
1 TATTGATTAAGATTCCCATATTC
* *
394463 TATTGATGAAGATT--C---TCC
1 TATTGATTAAGATTCCCATATTC
394481 TATTGATTAAGATTCCCATATT
1 TATTGATTAAGATTCCCATATT
394503 GATGAATACG
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
18 15 0.48
20 1 0.03
21 1 0.03
23 14 0.45
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (23 bp):
TATTGATTAAGATTCCCATATTC
Left flanking sequence: Indices 393940 -- 394439
GAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCG
AAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAATCTGTGATGGCCTG
GTGCCTGCTTATAGATTCGTATATATCCACCTTATCTTCAGGGTTATCCCTTTCCTGAGTGTAAC
GAAGGGAAGGGCATGTTGTATATGCATATACACTATGGGCCCCACCACTATTGGCAAGAGTGCAG
TGGCCGGGCTCCCGGATCACTTCTGTCATTAATAGAGTGTGGATCTGGTATCTCGCTCGTATCCC
CTCGCCTGTAGTGTAGACATAAACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCG
CTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTCTTGGTT
TAGTTATTTTGAACAAACTAGTTTTTGAATCTTGAAAAGATTCTA
Right flanking sequence: Indices 394503 -- 395002
GATGAATACGTTCGAGGAAGGGAGAGGAGGCATCCCCCCGGACCCGACAAAACCTGACAAAAACA
ACTGGAAATAAAGTGCCCAAAGCTGCGCTCTATTCCAGTGTGAGTATCCGGAAAAGTTAGTTCCA
CCGGTATAACTCCTGGGACATGCTAGTGTACTATATGACCGCTTAATCCGTACCAGAATACGATC
GACCTTCACGATCATTCGGCATAAATAGGTGATTGTTTAGAGGCCAATCTTCATGGTGGTTCACC
GGAGGTGGGGGCTAGCTCCCCAATGTACGGATCTGGAGGTCCTACCGAAGTAAAGGGCTTAAGGT
CCCCGTCCACGCCGTCCGAGCTGGCACTGACTTTCGAAGCAAGACTTGAACATGAGCACGTGGTT
CGAAGAAGCTTTCGATTCGGGTCCAGTCATCATACTTACTGAGCTCTACTTAAATGATCCTTCGT
CTCCCCCCCTATTTATTTAAGGTTTTGGCGGGCAATCACAATTCT
Found at i:394485 original size:18 final size:17
Alignment explanation
Indices: 394462--394508 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
394452 TTCCCATATT
394462 CTATTGATGAAGATTCTC
1 CTATTGATGAAGATTC-C
*
394480 CTATTGATTAAGATTCC
1 CTATTGATGAAGATTCC
394497 CATATTGATGAA
1 C-TATTGATGAA
394509 TACGTTCGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 24 0.92
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (17 bp):
CTATTGATGAAGATTCC
Left flanking sequence: Indices 393962 -- 394461
TGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCT
GAGCGTAGCGAAGGGAAGGGGCCGGCCAATCTGTGATGGCCTGGTGCCTGCTTATAGATTCGTAT
ATATCCACCTTATCTTCAGGGTTATCCCTTTCCTGAGTGTAACGAAGGGAAGGGCATGTTGTATA
TGCATATACACTATGGGCCCCACCACTATTGGCAAGAGTGCAGTGGCCGGGCTCCCGGATCACTT
CTGTCATTAATAGAGTGTGGATCTGGTATCTCGCTCGTATCCCCTCGCCTGTAGTGTAGACATAA
ACCCATCTTAGAATAGTGGCCTGGCCCGGCCATGCATCTGTCGCTTCTATCTCGATATCCACCCT
ATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTCTTGGTTTAGTTATTTTGAACAAACTAGT
TTTTGAATCTTGAAAAGATTCTATATTGATTAAGATTCCCATATT
Right flanking sequence: Indices 394509 -- 395008
TACGTTCGAGGAAGGGAGAGGAGGCATCCCCCCGGACCCGACAAAACCTGACAAAAACAACTGGA
AATAAAGTGCCCAAAGCTGCGCTCTATTCCAGTGTGAGTATCCGGAAAAGTTAGTTCCACCGGTA
TAACTCCTGGGACATGCTAGTGTACTATATGACCGCTTAATCCGTACCAGAATACGATCGACCTT
CACGATCATTCGGCATAAATAGGTGATTGTTTAGAGGCCAATCTTCATGGTGGTTCACCGGAGGT
GGGGGCTAGCTCCCCAATGTACGGATCTGGAGGTCCTACCGAAGTAAAGGGCTTAAGGTCCCCGT
CCACGCCGTCCGAGCTGGCACTGACTTTCGAAGCAAGACTTGAACATGAGCACGTGGTTCGAAGA
AGCTTTCGATTCGGGTCCAGTCATCATACTTACTGAGCTCTACTTAAATGATCCTTCGTCTCCCC
CCCTATTTATTTAAGGTTTTGGCGGGCAATCACAATTCTTCCTGT
Found at i:398078 original size:23 final size:23
Alignment explanation
Indices: 398052--398120 Score: 111
Period size: 23 Copynumber: 3.0 Consensus size: 23
398042 GCAGATTCAT
*
398052 CAATATGGGAATCTTCATCAATA
1 CAATATGGGAATATTCATCAATA
398075 CAATATGGGAATATTCATCAATA
1 CAATATGGGAATATTCATCAATA
* *
398098 GAATATGGGAATATTTATCAATA
1 CAATATGGGAATATTCATCAATA
398121 TAGAATCTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (23 bp):
CAATATGGGAATATTCATCAATA
Left flanking sequence: Indices 397552 -- 398051
CGATCGATATGATCCTTTTGTCGACCGATCCGAAGCTCTTTGATTGGTTCATTAGCTTCTCTAAT
CCGACTATTTAATTCTAAATTTCGAGCAGAATGATGGGGTGGAGGGATAAAAATCATTAAGAATA
AGGATGGGGTCCGAATCTTCATGGATATGAATCGACTGTGGAAGCATAAGAATAAGATCCAATAT
TTCCCCGGGTCTCATCGGAGCTATTCCTAACAAAGCTCTTAACGAAGCTATTCATTTCTATAAAT
TTCCAAATGAAAAAGACGGATTCATACTACTGGGAACGGCTAGCAGCTAAAGGATCAATCTTTCC
ATTTTCGTTGATCAATTGGTGTTTTCCCAGGAACGGAAATTACCTCTTGCTCGTTGGCGAGAAGG
CCGGAATGGACCGAAAATCGATAGCTTGAGCTAAAATCCGGGCCGAAAATCCATAGCTTGATCAG
CTGCAGGCCCGCAGTTCGGACTTTCAATCTGGGTGGCAGATTCAT
Right flanking sequence: Indices 398121 -- 398620
TAGAATCTTTTCAAGATTCAAAAACTAGACAAAAATTCGAACTAGACAAGATTCAAAAATAGATG
TTACTCTATATGCTCTTGAATAAAGAAGATAGGGTGGATATAAAGATAGAAGCGACAGATGCATG
GCCACTACTTGAGCTAGGCCACTCTTCTAAGATGGGTTTCTATATGCTCCAGGTCAAGATACGAG
CGAGATACCAGATCCACCACTAGAATTGATGAATAAGGATCCGGGAAATAACTGGATTCGGAAAA
TAGATGGCACTATCGGGCGGGAAATAACTGGCCTAATAAGATAGGGTGGATGTGGCAAGAGGATG
GGCACTGCTCTATACTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACC
CATAGTTTTACTCCGCGTAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACT
CTTCTTATTATGGGGTTGCACACTGCACCCCAGGCCACGGGCCAT
Found at i:398183 original size:17 final size:17
Alignment explanation
Indices: 398132--398183 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
398122 AGAATCTTTT
398132 CAAGATTCAAAAACTAGA
1 CAAGATTCAAAAA-TAGA
* * *
398150 CAAAAATTC-GAACTAGA
1 C-AAGATTCAAAAATAGA
398167 CAAGATTCAAAAATAGA
1 CAAGATTCAAAAATAGA
398184 TGTTACTCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
16 6 0.23
17 11 0.42
18 3 0.12
19 6 0.23
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (17 bp):
CAAGATTCAAAAATAGA
Left flanking sequence: Indices 397632 -- 398131
TAAATTTCGAGCAGAATGATGGGGTGGAGGGATAAAAATCATTAAGAATAAGGATGGGGTCCGAA
TCTTCATGGATATGAATCGACTGTGGAAGCATAAGAATAAGATCCAATATTTCCCCGGGTCTCAT
CGGAGCTATTCCTAACAAAGCTCTTAACGAAGCTATTCATTTCTATAAATTTCCAAATGAAAAAG
ACGGATTCATACTACTGGGAACGGCTAGCAGCTAAAGGATCAATCTTTCCATTTTCGTTGATCAA
TTGGTGTTTTCCCAGGAACGGAAATTACCTCTTGCTCGTTGGCGAGAAGGCCGGAATGGACCGAA
AATCGATAGCTTGAGCTAAAATCCGGGCCGAAAATCCATAGCTTGATCAGCTGCAGGCCCGCAGT
TCGGACTTTCAATCTGGGTGGCAGATTCATCAATATGGGAATCTTCATCAATACAATATGGGAAT
ATTCATCAATAGAATATGGGAATATTTATCAATATAGAATCTTTT
Right flanking sequence: Indices 398184 -- 398683
TGTTACTCTATATGCTCTTGAATAAAGAAGATAGGGTGGATATAAAGATAGAAGCGACAGATGCA
TGGCCACTACTTGAGCTAGGCCACTCTTCTAAGATGGGTTTCTATATGCTCCAGGTCAAGATACG
AGCGAGATACCAGATCCACCACTAGAATTGATGAATAAGGATCCGGGAAATAACTGGATTCGGAA
AATAGATGGCACTATCGGGCGGGAAATAACTGGCCTAATAAGATAGGGTGGATGTGGCAAGAGGA
TGGGCACTGCTCTATACTATATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAA
CCCATAGTTTTACTCCGCGTAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCA
CTCTTCTTATTATGGGGTTGCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCCC
CTTCCCTTCGCTACGCTCAGGAAAGGGATAACCTTCCCTTCGCTA
Found at i:398679 original size:32 final size:32
Alignment explanation
Indices: 398638--398718 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
398628 CTGGCCGGCC
398638 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
398670 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
398702 CCTTCCCTTCGCTACGC
1 CCTTCCCTTCGCTACGC
398719 GGAGTAAACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 398138 -- 398637
TCAAAAACTAGACAAAAATTCGAACTAGACAAGATTCAAAAATAGATGTTACTCTATATGCTCTT
GAATAAAGAAGATAGGGTGGATATAAAGATAGAAGCGACAGATGCATGGCCACTACTTGAGCTAG
GCCACTCTTCTAAGATGGGTTTCTATATGCTCCAGGTCAAGATACGAGCGAGATACCAGATCCAC
CACTAGAATTGATGAATAAGGATCCGGGAAATAACTGGATTCGGAAAATAGATGGCACTATCGGG
CGGGAAATAACTGGCCTAATAAGATAGGGTGGATGTGGCAAGAGGATGGGCACTGCTCTATACTA
TATAGGCTGCACCCACAAGGAGATACAAGCAATATATCCAGGTTAACCCATAGTTTTACTCCGCG
TAAGGTTATCCCTTTCCTGAGTGGAACGAAGGGAAGGCACGGGCCACTCTTCTTATTATGGGGTT
GCACACTGCACCCCAGGCCACGGGCCATCACTGTGCTGGCCGGCC
Right flanking sequence: Indices 398719 -- 399218
GGAGTAAACCTAATAGTGTGGGATCTACTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCTACT
TCCCTTCGCTACGCGAAGTAAGGGGATTTCCTGGGGATCATACTATAATAGTAGAACATGCAGTG
ACATATAAAGTGGATGGCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCG
GCCACTGTCTATGCACTGTGCCCAATAGTGCCTATCTCTCATGGCACTGGGGCCAGCCACTATCC
ACTGTTCTAAGAATGGGTTCATATATGCTCCAGGTCAAGATACGAGCGAGATACCAGATCCACAC
TCTATTAATGACAGAAGTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGGTAGGGCCC
ATAGTGTATATGCATATACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAA
GATAAGGTGGATATATACGAATCTATAAGCAGGCACCAGGCCATC
Found at i:399276 original size:32 final size:32
Alignment explanation
Indices: 399235--399358 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
399225 CTGGCCGGCC
399235 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
399267 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
399299 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
1 CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
399331 CCTTCCCTTCGCTACGCTCAGGAAAGGG
1 CCTTCCCTTCGCTACGCTCAGGAAAGGG
399359 TTTACCCTAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (32 bp):
CCTTCCCTTCGCTACGCTCAGGAAAGGGATAA
Left flanking sequence: Indices 398735 -- 399234
TGTGGGATCTACTTCCCTTCGCTACGCTCAGGAACAGTGGGGATCTACTTCCCTTCGCTACGCGA
AGTAAGGGGATTTCCTGGGGATCATACTATAATAGTAGAACATGCAGTGACATATAAAGTGGATG
GCCCTTGCTGTTATAGGGTGGATGTGGCGTAGTGCATAGACAGTAGCCGGCCACTGTCTATGCAC
TGTGCCCAATAGTGCCTATCTCTCATGGCACTGGGGCCAGCCACTATCCACTGTTCTAAGAATGG
GTTCATATATGCTCCAGGTCAAGATACGAGCGAGATACCAGATCCACACTCTATTAATGACAGAA
GTGATCCGGGAGCCCGGCCACTGCACTCTTGCCAATAGTGGTAGGGCCCATAGTGTATATGCATA
TACAACATGCCCTTCCCTTCGTTACACTCAGGAAAGGGATAACCCTGAAGATAAGGTGGATATAT
ACGAATCTATAAGCAGGCACCAGGCCATCACTATGCTGGCCGGCC
Right flanking sequence: Indices 399359 -- 399858
TTTACCCTACACTATAGACGGGGCATGGCCACTGCTAGATCTCTGTTGTAGTAATCAGGATCAGG
GCCTGATCACTATGGCTATTCACATCCCTTAGGATCAAGGATCTAATCGCTAATTCATAGTTGCT
ATGGCATTTAGATCAGGCCTATAACTATGTTAGGATTTAGGGAATATCTAGAGCATAGAATAGCT
CGGATCCATATTCTTAGCCGGTTGTTAGAATCATGAGCCTATTAATATTAAAAAGAACCGGAGAA
GATCGGGAAGGGAAAGGAACAAACTACTGAAGCCTGCAGGGTGGCCCGGCCCCTTCCCTTCGCTA
CGCTCAGGAAAGGGATTCTCCTATTGAAAAAAAGAGAGATGGCACTAAAAAACATATTGAAGGCT
GCAGTCTATAAAGAACTCTATTTAGAATATGTGATTAAAAAAGAGTGAACTATTGTTGTTATTGA
AAAAGAAAGAGAATTGATTCTTTCCTGGCAAGCTCCTTTAGTTCT
Found at i:402087 original size:21 final size:21
Alignment explanation
Indices: 402062--402102 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
402052 TTACCGAGCC
*
402062 CCCTTTTTATTGAATAATTAG
1 CCCTTTTTATTCAATAATTAG
*
402083 CCCTTTTTATTCAATGATTA
1 CCCTTTTTATTCAATAATTA
402103 ATGAGTCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (21 bp):
CCCTTTTTATTCAATAATTAG
Left flanking sequence: Indices 401562 -- 402061
AACGAAGGCATTATGGACGGTAGAGTAGAGCCCCTGGCAGAGGGATATTTCATTGTCCGTAAAGG
ACCTGACAGAATACTGGGAATTGCTCCTCAGCTACAAGTTTGCACTGAGAGGGGATTGAAGAACT
CCCTTCTATTGAGCCATGTTTAGATGGAATCGGGTACTGCGACGCACGATTATTTCCCATTAGAA
CTAACCGAAGAGAATATTGAAAACTTCCGACCCGGCTCATTCATGGGGAAAAAACCCCAGCCCCC
CCGGGACCCTCTTCTATTTAGGGGGGGACAACCAGTAGGGTTTATTTCCGAAGTTTCCCCAGTGA
GGGCCTGGAAGGGGAAAATGAATCGATTTATCAGGGTGATCCGTTTCCCCTTGAATCAATCAAGA
AAGAAATGAAAAGAATCACCCTGAATCATTTCATTCATAGGGGGGTCCCGGGCGTAGCGGCGGGG
AGCCCGCAGAACCTCGACAAAGGTACTTGGCTTGCTTACCGAGCC
Right flanking sequence: Indices 402103 -- 402602
ATGAGTCCAACCACCTTTCTCACCACCTCATTGGGAGCCGACATTGGGTTTACCTCTTGGGTTGG
GCGAACCACCAAAAAGGCGATTTCCCTCCTTTTTCACTTTGATCTCTACTTCAGTACGAAAGGGA
CCGGAAGAATAGCATCTCACTGGAAAAGATAGCAGGCAACACCAGAAGACCGATCTTCGATCCTC
CATCCATCTTCTGGTGTTACGTCGAATCCGTTCAGCACATGGATGGCCTCCCTCAGGTTTCAAGA
TGAATAGGAAAAGCCCGCCTTGTAGAGCATCTCCATCTCCGATGGAACAGGCAGTGGGAGAGCAG
CTCGGTCCTATTCAACAGGGCTTTCCCGTCCCGATAGTATTATTGTACTAATCCTTATCCCGGGA
ACAGCTAGCATCTCTTTCCCTTCAATAAAGGAATAAGGCGGATGCGTAGTTGATTTGATTAATGG
TGCTAATTCTTGGCGTCGAAGGAGATTTCGCAATATTACTAGCTC
Found at i:404359 original size:32 final size:32
Alignment explanation
Indices: 404318--404469 Score: 304
Period size: 32 Copynumber: 4.8 Consensus size: 32
404308 ATCCCCACTG
404318 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
1 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
404350 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
1 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
404382 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
1 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
404414 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
1 TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
404446 TTCCTGAGCGTAGCGAAGGGAAGG
1 TTCCTGAGCGTAGCGAAGGGAAGG
404470 GGCCGGCCAG
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 120 1.00
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (32 bp):
TTCCTGAGCGTAGCGAAGGGAAGGTTATCCCT
Left flanking sequence: Indices 403818 -- 404317
GCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCCCTCTCTTTTTTTAGCTTAATGTTTTTTCA
ATAGTGTGAAATCTTCATTTAGAGTGCGTGAAGCTTTCAGTCTTTTTTATAGTGCATAGTGTTCT
CTCTTATTCAATAGCCTGAAAGATTTTGCTAGTGGCCGGCTACTATTCTATTGGTACTATTGGGG
ATCTGATAGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTT
GAATAGAAGGGTGTGAAGGCACGGTGGATAATGGCTGGCCCCAGTGCCATGAGAGACTATTGGGC
ACAGTGCATAGACAGTGGCCGGCTACTGTCTATGCACTACGCCACATCCACCCTATAACAGCAAG
GGCCATCCACTTTATATGTCACTGCATGCTCCACTATTATAGTATGATCCCCAGGAGATCCCACA
CTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTG
Right flanking sequence: Indices 404470 -- 404969
GGCCGGCCAGCATAGTGATGGCCCGTGGTTTATATATAACATAGTATATATCCACCTTATCTTAG
AATAGTGGCCTGGCTCTGATAGATTGCTTGTATCTCTTATGGATGTAGTCTATATAAACCCATCT
TATTGTACATCCACCCTATCTTATTAGGATTCCCAATCCATCAATGAATCCCACAGGCAATAGTG
CAGTGGCCGGGCTCCCGGATCCTTATTCATCAATTCTAGTGGTGGATCTGGTATCTCGCTCGTAT
CCCCCCGCCTGTAGTGTAGACATCCACCCGATCTTAGAACAGTGGCCTGGCCCGGCCATGCATCT
GTCGCTTCTATCTCGATATCCACCCTATCTTCTTTCTTCAAGAGCATTTGCATGGTATATGTCTT
GGTTTAGTTATTTTGAACAAACTAGTTTTTGAATCTTGAAAAGATTCTATATTGATTAAGATTCC
CATATTGATGAATTAGCTGCGCTCAAGATGCGGGCTTTTTTCTTT
Found at i:407007 original size:56 final size:56
Alignment explanation
Indices: 406912--407018 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
406902 ATCCATTCCC
* * *
406912 ATTTACACGAAGTACCAATCTCGTCATAAATAGGAATAGATCATGCCGAATCTCCT
1 ATTTACACAAAGTACCAATCTCGTCATAAAGAGAAATAGATCATGCCGAATCTCCT
*
406968 ATTTCCACAAAGTACCAATCTCGTCATAAAGAGAAATAGATCATGCCGAAT
1 ATTTACACAAAGTACCAATCTCGTCATAAAGAGAAATAGATCATGCCGAAT
407019 TGCCCCTCCG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (56 bp):
ATTTACACAAAGTACCAATCTCGTCATAAAGAGAAATAGATCATGCCGAATCTCCT
Left flanking sequence: Indices 406412 -- 406911
TCGGTCTCTGCTTGCTGGGTCATTAACTGCCGCAGATGCAATTTCGTGATCCTCTACCGATGAGA
TTGGCGGTTGTTCCCTCAGTCATGGCGGGACAGCCACATTGACTTTCCCCTGCCGGAGAACGGGA
AAAGCGAGGTAAACTTGAGATTACAGCACCACAGTATTGAGTACCACCTGAACCACCCTCCTTTT
CACATTCCGTACCGGGAATAACTTGTCCATCCATCCATCCATATAGTGTATACGTTAGCAATCAT
GTTCAATAATCACCTAGGTCTCTTCCATCCAAAGATGCAGCGCACGGACAATGGGAAAATACCAT
TCTTCTTTTTGGTCGGCCGAAGCGCGTTTGGCCGCTGCTCATTCAGCGACATTCATTGGGGACCA
GCACTGTGAAAAATTGTTACGAATACTTGATCTCCTCGCTAAACATTCTTATATCCAATTCATCC
GAATTTCATTTTGCGAGAGCCGGAAAAACGAGTTCATCCATTCCC
Right flanking sequence: Indices 407019 -- 407518
TGCCCCTCCGGGTACTGATGCTGCGTCCACCCCTATATCGAAATAAGGAACTCGTGGCTGGGATA
ACCCAAGGCTCGAGGCAGGCGGCTTTGGATGTGAACCGGCCCGAAAGCGCTGCCCGGCCCTATAT
TGATTGATTCATTTCATTTCGGGCTAGTTCGATTCCTTATGCTCAGGCTTTTGCCTGAGCAGGTG
CTTACTGTCGCCCATAGCAAAGAGAAGGAGGAGGAGCAGAGAGAAAAGAGTGAAGCGAAATTTGT
GATGTCAACTTCTTCCCGTTCGTCCTGCCGTGCTTTTCCCGCCCGCCCGATGGATTGGGCAGATA
AATGCTCGACATCTTTCCCGTGCTGCCCGAACGACAAGGTCGAGCCGGCTGCAGGACCCCATTCT
TTTGAGAACCCTCATTGCTATTCTTCCATCAGATGAGGCATGGTCCACACACGAAGGATTTATCA
TGTTCGGGGGTCGCATGCAATTTTGCTGGGGAAAAAGGACCAATC
Found at i:414089 original size:27 final size:29
Alignment explanation
Indices: 414058--414114 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
414048 CAGAAGGCAC
414058 ATCCC-TCC-GCGTAGCGAAGGGAAGGTT
1 ATCCCTTCCAGCGTAGCGAAGGGAAGGTT
414085 ATCCCTTTCCTGAGCGTAGCGAAGGGAAGG
1 ATCCC-TTCC--AGCGTAGCGAAGGGAAGG
414115 ACGGGTGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.20
29 3 0.12
32 17 0.68
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (29 bp):
ATCCCTTCCAGCGTAGCGAAGGGAAGGTT
Left flanking sequence: Indices 413558 -- 414057
GAATACTATTCTATAGTTGTAGGCCTGGCCTGAATGCTCCGTCTATACCGTAGGCTCAATGCCAT
AGCCATGCCCCGTAGGTTAACCCTCGTAGCAAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAA
GGGAAGGCACGTGGTGATCCCCCTGTTCCATAGGTCACACGGTATAGGACAACCCTTAGCCAATG
GATCCGGCACTTGCACTCGGAGGGAGGCCGGGCCTAATCTCTTTTTAATCACATAGTTCTATAGT
GCCCTCTTTAATCACAGAATAGGATTTTACACTACAGTGCATAGTGTTCTCTCTCTTTTTTTAGC
TCCTAATAGAATGCCCTCTTTAATCACAGAGTTGAAGAATCTAGTTCACCCTCTTTAATCACACA
ATCTTCATAGTGACCCTTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCTAC
TAGAGTGTTCTCTTTCCTTTCTTAGCTCAATCCTGCAGAAGGCAC
Right flanking sequence: Indices 414115 -- 414614
ACGGGTGTGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATT
AGAGTGCCTTCGGCCTTTATTAAGAGGTTAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCC
CTTTCCTGAGCGTAGCGAAGGGAAGGACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTT
TTAGATAGTGCATAGTGTTCCCTCTTCTTCAATAGCTTGAAAGATTTTGCTAGTGGCCGGCTACT
ATTCTATTGGTACTATTGGGGATCTGATAGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTA
GACATCCACCCGATCTTCTTTGAATAGAAGGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAG
TGCCATGAGAGACTATTGGGCACAGTGCATAGACAGTGGCCGGCTACTGTCTATGCACTACGCCA
CATCCACCCTATAACAACAAGGGCCATCCACTTTATATGTCACTG
Found at i:414247 original size:32 final size:32
Alignment explanation
Indices: 414204--414270 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
414194 CTTTATTAAG
414204 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
*
414236 AGGTTATCCCTTTCCTGAGCGTAGCGAAGGGA
1 AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
414268 AGG
1 AGG
414271 ACGGGTGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (32 bp):
AGGTTAACCCTTTCCTGAGCGTAGCGAAGGGA
Left flanking sequence: Indices 413704 -- 414203
ATCCCCCTGTTCCATAGGTCACACGGTATAGGACAACCCTTAGCCAATGGATCCGGCACTTGCAC
TCGGAGGGAGGCCGGGCCTAATCTCTTTTTAATCACATAGTTCTATAGTGCCCTCTTTAATCACA
GAATAGGATTTTACACTACAGTGCATAGTGTTCTCTCTCTTTTTTTAGCTCCTAATAGAATGCCC
TCTTTAATCACAGAGTTGAAGAATCTAGTTCACCCTCTTTAATCACACAATCTTCATAGTGACCC
TTCTTTCATCACATTTTATAGAAAAACGTCACACAATAGGATTTTCTACTAGAGTGTTCTCTTTC
CTTTCTTAGCTCAATCCTGCAGAAGGCACATCCCTCCGCGTAGCGAAGGGAAGGTTATCCCTTTC
CTGAGCGTAGCGAAGGGAAGGACGGGTGTGATCTTGCTCTTTTTAGCTCGATGTTGTTATAGTCG
GATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAG
Right flanking sequence: Indices 414271 -- 414770
ACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCCCTCTT
CTTCAATAGCTTGAAAGATTTTGCTAGTGGCCGGCTACTATTCTATTGGTACTATTGGGGATCTG
ATAGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTTGAATA
GAAGGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGACTATTGGGCACAGT
GCATAGACAGTGGCCGGCTACTGTCTATGCACTACGCCACATCCACCCTATAACAACAAGGGCCA
TCCACTTTATATGTCACTGCATGCTCCACTATTATAGTATGATCCCCAGTAGATCCCACACTATT
AGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGAGCGTAGCGAAGGGAAGTA
GATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGTTA
Found at i:414774 original size:79 final size:75
Alignment explanation
Indices: 414643--414798 Score: 251
Period size: 79 Copynumber: 2.0 Consensus size: 75
414633 TATGATCCCC
414643 AGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCTGA
1 AGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGAT--CC-CT-TTCCTGA
414708 GCGTAGCGAAGGGA
62 GCGTAGCGAAGGGA
*
414722 AGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGGT-TATCCCTTTCCTGAGCG
1 AGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAA-GTAGATCCCTTTCCTGAGCG
414786 TAGCGAAGGGA
65 TAGCGAAGGGA
414797 AG
1 AG
414799 GTTATCCCTT
Statistics
Matches: 75, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
75 23 0.31
76 2 0.03
77 2 0.03
79 46 0.61
80 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (75 bp):
AGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCTTTCCTGAGCGT
AGCGAAGGGA
Left flanking sequence: Indices 414143 -- 414642
GATGTTGTTATAGTCGGATCAAAGTCGAGATCCAATTAGAGTGCCTTCGGCCTTTATTAAGAGGT
TAACCCTTTCCTGAGCGTAGCGAAGGGAAGGTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGAC
GGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGATAGTGCATAGTGTTCCCTCTTCT
TCAATAGCTTGAAAGATTTTGCTAGTGGCCGGCTACTATTCTATTGGTACTATTGGGGATCTGAT
AGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATCCACCCGATCTTCTTTGAATAGA
AGGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCATGAGAGACTATTGGGCACAGTGC
ATAGACAGTGGCCGGCTACTGTCTATGCACTACGCCACATCCACCCTATAACAACAAGGGCCATC
CACTTTATATGTCACTGCATGCTCCACTATTATAGTATGATCCCC
Right flanking sequence: Indices 414799 -- 414903
GTTATCCCTTTCCTGAGCGTAGCGAAGGGAAGGGGCCGGCCAGCATAGTGATGGCCTGGTGCCTG
CTTATAGATTCGTATATATCCACCTTATCTTCAGGGTTAT
Found at i:414832 original size:37 final size:32
Alignment explanation
Indices: 414751--414831 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
414741 GTTTTACTCC
414751 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
414783 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
1 GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
414815 GCGTAGCGAAGGGAAGG
1 GCGTAGCGAAGGGAAGG
414832 GGCCGGCCAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (32 bp):
GCGTAGCGAAGGGAAGGTTATCCCTTTCCTGA
Left flanking sequence: Indices 414251 -- 414750
TGAGCGTAGCGAAGGGAAGGACGGGTGTGATCTTGCTTTTCTTAGCTTAATGTTTCTTTTTAGAT
AGTGCATAGTGTTCCCTCTTCTTCAATAGCTTGAAAGATTTTGCTAGTGGCCGGCTACTATTCTA
TTGGTACTATTGGGGATCTGATAGTGAATAGTATAGAGCCCCGGCCCGCCTGTGGTGTAGACATC
CACCCGATCTTCTTTGAATAGAAGGGTGTGAAGGCACGGTGGATAGTGGCTGGCCCCAGTGCCAT
GAGAGACTATTGGGCACAGTGCATAGACAGTGGCCGGCTACTGTCTATGCACTACGCCACATCCA
CCCTATAACAACAAGGGCCATCCACTTTATATGTCACTGCATGCTCCACTATTATAGTATGATCC
CCAGTAGATCCCACACTATTAGTTTTACTCCGCGTAGCGAAGGGAAGTAGATCCCCACTGTTCCT
GAGCGTAGCGAAGGGAAGTAGATCCCACACTATTAGTTTTACTCC
Right flanking sequence: Indices 414832 -- 414903
GGCCGGCCAGCATAGTGATGGCCTGGTGCCTGCTTATAGATTCGTATATATCCACCTTATCTTCA
GGGTTAT
Done.