123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_010303
Parameters: 2 7 7 80 10 50 500
Length:  414903

Tables:   1   2   

This is table  2  of  2  ( 192 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269234--269293	18	3.3	18	95	0	93	35	20	20	25	1.96
269212--269256	23	2.0	23	100	0	90	40	15	13	31	1.86
271310--271360	18	2.7	19	78	9	59	29	11	25	33	1.91
271296--271556	106	2.4	107	87	2	391	34	11	24	29	1.91
271877--271943	32	2.1	32	97	0	125	23	20	32	22	1.98
278030--278128	32	3.1	32	98	0	189	24	32	20	23	1.98
278464--278627	32	5.1	32	100	0	328	22	21	31	24	1.98
278794--278861	32	2.1	32	97	0	127	25	19	32	23	1.97
278909--278965	29	2.0	29	89	0	87	33	21	24	21	1.97
279025--279092	32	2.1	32	94	0	118	23	32	17	26	1.97
282494--282894	32	12.5	32	100	0	802	22	21	32	24	1.98
283693--283771	39	2.0	39	97	0	149	29	21	27	21	1.99
290209--290269	31	2.0	31	93	0	104	24	16	31	27	1.96
292194--292441	99	2.5	99	94	1	426	22	20	27	29	1.98
292795--292886	32	2.9	32	100	0	184	22	32	22	21	1.98
303566--303689	32	3.9	32	100	0	248	21	22	32	23	1.98
304194--304299	31	3.4	31	67	19	92	27	27	20	24	1.99
304190--304313	64	1.9	64	95	0	221	28	29	19	23	1.98
304922--304957	18	2.0	18	88	0	54	27	27	5	38	1.79
307541--307589	16	2.7	18	81	12	57	24	14	30	30	1.94
310947--311011	18	3.6	18	85	8	96	38	13	13	33	1.85
310947--311019	36	2.1	35	89	2	110	38	13	13	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311513--311593	32	2.5	32	100	0	162	20	35	19	23	1.96
312180--312675	225	2.2	228	97	2	926	32	20	19	27	1.97
314720--314753	18	1.9	18	88	5	52	41	11	11	35	1.78
314760--314800	21	2.0	21	90	9	68	60	14	9	14	1.57
318865--318912	24	2.0	24	100	0	96	29	12	41	16	1.85
318833--318944	56	2.0	56	100	0	224	25	17	35	21	1.95
318824--318971	32	4.9	32	87	12	240	22	20	33	22	1.97
319390--319434	23	2.0	23	95	0	81	31	15	11	42	1.82
320426--320619	32	6.1	32	99	0	379	24	31	21	22	1.98
322330--322375	23	2.0	23	82	0	56	13	32	26	28	1.93
325625--325698	18	4.1	18	73	13	80	33	16	17	32	1.92
326162--326242	32	2.5	32	100	0	162	20	35	19	23	1.96
326941--327040	32	3.1	32	100	0	200	24	32	21	23	1.98
348263--348394	32	4.1	32	100	0	264	22	21	31	24	1.98
358238--358317	32	2.5	32	93	0	142	25	18	33	22	1.97
360349--360392	18	2.4	18	85	7	63	29	15	13	40	1.86
366151--366188	19	2.0	19	89	0	58	21	21	7	50	1.74
366953--367006	22	2.5	22	91	5	85	33	14	27	24	1.94
367004--367046	21	2.0	21	90	0	68	44	0	25	30	1.55
367200--367355	32	4.9	32	100	0	312	23	32	22	21	1.98
368031--368081	26	2.0	26	88	7	77	52	11	11	23	1.70
375330--375445	37	3.2	37	95	2	200	43	8	12	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375589--375712	32	3.9	32	100	0	248	21	22	32	23	1.98
376673--376715	21	2.0	21	90	0	68	30	25	0	44	1.55
376723--376763	18	2.3	18	91	0	64	24	34	19	21	1.97
377971--378024	26	2.0	27	92	3	92	25	9	14	50	1.73
377971--378053	26	3.1	27	82	3	80	22	10	12	54	1.68
380427--380614	32	5.9	32	100	0	376	21	22	31	23	1.98
380817--380860	22	2.0	22	95	0	79	25	27	15	31	1.96
380825--380877	20	2.5	21	87	6	72	24	24	16	33	1.96
388278--388344	18	3.4	18	71	25	64	41	11	14	31	1.83
388738--388850	32	3.5	32	100	0	226	22	34	20	23	1.97
388835--388972	43	3.4	43	78	13	182	21	29	22	26	1.99
388803--389079	79	3.6	75	85	7	333	23	30	22	24	1.99
388956--389112	32	4.5	32	74	18	152	23	32	20	23	1.98
388955--389100	77	1.9	77	100	0	292	24	32	20	22	1.98
393922--394045	32	3.9	32	100	0	248	21	22	32	23	1.98
394440--394502	18	3.0	23	68	22	73	30	15	11	42	1.82
394462--394508	18	2.6	17	86	6	67	31	14	14	38	1.87
398052--398120	23	3.0	23	93	0	111	42	11	14	31	1.82
398132--398183	17	3.0	17	70	13	52	55	15	11	17	1.68
398638--398718	32	2.5	32	100	0	162	20	35	19	23	1.96
399235--399358	32	3.9	32	100	0	248	23	32	22	21	1.98
402062--402102	21	2.0	21	90	0	64	26	17	7	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404318--404469	32	4.8	32	100	0	304	22	21	32	23	1.98
406912--407018	56	1.9	56	92	0	178	38	22	14	25	1.91
414058--414114	32	1.9	29	83	16	73	22	24	33	19	1.97
414204--414270	32	2.1	32	97	0	125	23	20	32	22	1.98
414643--414798	79	2.0	75	91	7	251	26	23	26	23	2.00
414751--414831	32	2.5	32	100	0	162	23	19	35	20	1.96

Tables:   1   2

The End!