Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_008362
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 704100
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
File 1 of 2
Found at i:3066 original size:5 final size:5
Alignment explanation
Indices: 3056--3094 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
3046 CTGAAGTGCT
3056 ACTTC ACTTC ACTTC ACTTC ACTTC ACTTC ACTTC ACTT
1 ACTTC ACTTC ACTTC ACTTC ACTTC ACTTC ACTTC ACTT
3095 AGTAGTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.21, C:0.38, G:0.00, T:0.41
Consensus pattern (5 bp):
ACTTC
Left flanking sequence: Indices 2556 -- 3055
TTTTGTAGTGACCCCTCCGGGGTCCCGGGTTGCTTTGGCGCGCCCCACCCCGTCAGTCCTGTGTT
GTACTTGACTTGACTCTCCCCCGCTTGCTGCTTGCTGATCGCAGTGTTCAAAAATGACACGAAGC
TGGATATGAGTAGATGTTGTTGGTCGAAAACGTCTTTCATTCACAATGAAACAGAATGGTCTCGC
TCGATGCGTCATTTTATGATGTGTATTTTCATATTAAGAGTTCTTAAAAGAACTCAACTCAAAGC
CCAACCGTCAAAAGGATGCTACAATGTTCGAAATTCTCAACTTAACACGCCCCCTTACTTCCTTC
GTGACCTCCCACTACTTCATCTACCGAAATGATTAGGCAGATCTCCTTTTTTCTAGCATTAAACC
TGCTCATGATCCTTAGGCTATAGAGCATGGAGCAGACAGAGAGATGAAAGGACCACCTTCTCCTG
CTTGCTTGATCGGAATCTATTTACATTTAGAATAGCTGAAGTGCT
Right flanking sequence: Indices 3095 -- 3594
AGTAGTTGAAACTCGGAGAGACAGAGAGAGTCCTCTCTCATACTTGCCAATTCCCTTGCTGATCA
GCAAGGGAATTGGCAGGAACCAACCTTAGTTGCCCCTCGGTAGAGTGAGTCTACTTAGCGAACTG
GCAGGACGCAGAGATCGATTGATCAATATGCATATCGAGAGTTGATGGTTGACCGCCGCCCCCCT
TGTCCTGTCCTGGGGGCTCCCCGGCCGGGGAGGCAAAGGGGATTGCTATCGTCACCCTTTCTCCC
GGTGTATGTGAAAGAGAAAAAGTGACGAACTTTTTTTCTTTTCGGTTGGTTGGTCCAAAGAACGA
GAGTCAGCTTCCTTAAGTCCGTTCTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTG
ACTGGTCGTAGGTTCGAATCCTACTTGGGGAGATCATTCTGAATTCGAATTGATAGTTATAGCTT
TTCTGACTAGCGACCCCTGTCCTTCTCCTTTTTCTTTTCTAAAGA
Found at i:5405 original size:5 final size:5
Alignment explanation
Indices: 5395--5435 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
5385 AATGAACTTT
5395 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG A
1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG A
5436 GAGTCGGAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
ATAAG
Left flanking sequence: Indices 4895 -- 5394
CTCCTCTTTCTGTCCGCTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTG
AAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTA
ATCAATGACTCCGGTAGTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGC
GAAAGAAGATTCGATCAACGTACAAGGTTTGCCTTCTTGTGAGAAGGAGGGTTCTTAATTGTGTT
CTCAGTGCAAAAGGAGTCTTGGAGAAGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCA
GTTCGGGGGTCAGCTTTGGGATTTGCCTGATCGACCCCTACCAGTGTATTAATATACAAAAATGA
AGATTGACATTCGTATGTACAATTTACCGGTTCTTCCTCCCGAATTGAGACCCATTGTTTATAGG
TCTGGGGATAAAGTAAAGTAGTGACTTCGGATATTAATGAACTTT
Right flanking sequence: Indices 5436 -- 5935
GAGTCGGAACAACAACCTTGCCTATCTATTAAAAAGAAGTGAATTAGCACCAGCAGATTTAGTAA
TGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAA
CCGACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAGGGTAAAGAGGG
GAGGTTTCGCGAGACTCTGCTTGGGAAACGGGTCGATTACTCGGGGCGTTCTGTCATTGTTGTGG
GTCCTTCGCTTTCATTACATCAATGTGGATTACCTCTAGAGATAGCAATAAAGCTTTTTCAGCTA
TTTGTAATTCGCGATTGAATCACGAAACGTGCTACTTCTAATGTCAGGATTGCTAAAAGGAAAAT
TTGGGAAAAGGAACCCATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGACATCCTGTACTGT
TGAACAGAGCACCTACCCTGCATAGATTAGGCATACAGGCCTTCC
Found at i:6752 original size:21 final size:21
Alignment explanation
Indices: 6726--6766 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
6716 ACTCAGGCCC
6726 ATTGTCGAATCCTACTCAGCA
1 ATTGTCGAATCCTACTCAGCA
6747 ATTGTCGAATCCTACTCAGC
1 ATTGTCGAATCCTACTCAGC
6767 CAAAAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (21 bp):
ATTGTCGAATCCTACTCAGCA
Left flanking sequence: Indices 6226 -- 6725
AAAAAAGTAAACTACAATAATAACAATTATTATAAGTATACGAAAGATAAAGAACCCCATTTTTC
TAGTTCCTATGATGCACTGGGAGCTTATAGACAAAAACGAATCGGTTTAAACAGTCCCTTGTGGC
TCCGATGGAAACTAGATCAACGCATCGTTGGGTCAAGAGAAGTTCCGATTGAAGTTCAATATGAA
TCTTTTGGGACTTATCATGAGATTTATGCCCACTATCTAGTAGTGGGAAATAGAAAAAAAGAAAT
CCGTTCTATATACATTCGAACCACTCTTGGTCATATTTATTTTTATAGAGAAATAGAGGAAGCCA
TACAAGGATTTAGTCGGGCCTATTCATACACTATCTAAACAAGGAAGTTAGATTCGGCGATGCCC
CTTTCGGGGGGCATTCCGATTTCGCTAGTACCATCTTTTTTGCCGCGCAAATCCAGATTGAGATT
GAGGAAAGGGAGTAAATTAAGTTTTCGAATCACTGACTCAGGCCC
Right flanking sequence: Indices 6767 -- 7266
CAAAAAAAGGGGGTACTTATGTATGGCAGAACGGGCCAACCTGGTCTTTCATAATAAAGAGATAG
ACGGAACTGCTATGAAACGGCTTATTAGCAGATTAATAGATCATTTCGGAATGGGATATACATCC
CATATACTGGATCAAATAAAGACTCTGGGCTTCCATCAAGCCACTACTACATCGATTTCTTTAGG
AATCGAGGATCTTTTAACAATACCCTCTAAAGGTCCAAGACGCGGAACAACAGAGTTTTCTTTTG
GAGAAACACTATTATTATGGAGCTGTACACGCGGTAGAAAAATTACGCCAATCCGTTGAGATATG
GTATGCTACAAGTGAATATTTGAAACAAGAAATGAATTCGAATTTTCGAATAACGGATCCTTCTA
ATCCAGTCTATCTAATGTCTTTTTCAGGAGCCAGAGGAAATGCATCTCAGGTACACCAATTAGTA
GGTATGAGAGGGTTAATGGCGGATCCTCAAGGACAAATGATTGAT
Found at i:7638 original size:15 final size:15
Alignment explanation
Indices: 7618--7646 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7608 CATAACTGCC
7618 TTTCGAGCACAACCG
1 TTTCGAGCACAACCG
7633 TTTCGAGCACAACC
1 TTTCGAGCACAACC
7647 AATATATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (15 bp):
TTTCGAGCACAACCG
Left flanking sequence: Indices 7118 -- 7617
AAGAAATGAATTCGAATTTTCGAATAACGGATCCTTCTAATCCAGTCTATCTAATGTCTTTTTCA
GGAGCCAGAGGAAATGCATCTCAGGTACACCAATTAGTAGGTATGAGAGGGTTAATGGCGGATCC
TCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAAT
ATATAATTTCCTGCTACGGAGCCCGAAAAGGGGTTGTAGATACTGCTGTACGAACAGCGGATGCT
GGCTATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGTGG
TACTATCCAAGGCCAAGGTATTTCTGTGAGTCCTCAAAATGGGATGACGGAAAAACTTTTTGTCC
AAACACTAATTGGTCGTGTATTAGCAGACGATATATATATTGGTTCACGATGCATTGCTTCTCGA
AATCAAGATATTGGAATTGGATTAGTCAATCGATTCATAACTGCC
Right flanking sequence: Indices 7647 -- 8146
AATATATATTAGAACCCCCTTTACTTGCCGGAGCACATCTTGGATCTGTCAATTATGTTATGGGC
GGAGTCCCACTCATGGGGATCTGGTCGAATTGGGGGAAGCTGTAGGTATTATTGCGGGTCAATCA
ATTGGGGAGCCGGGGACTCAATTAACATTAAGAACTTTTCATACTGGTGGAGTATTCACAGGGGG
TACTGCCGACCTTATACGATCCCCCTCGAATGGCAAAATCCAATTCAATGAGGATTTGGTTCACC
CCACACGTACCCGTCATGGGCAGCCTGCTTTTCTATGCTATATAGACTTGCATGTAACTATTCAG
AGTCAGGATATTCTACATAGTGTGAATATTCCGTTAAAAAGCTTGATTCTAGTGCAATATGTAGA
ATCTGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCACTTTGCATTTTAAAGAAAAGGTAC
AAAAGCATATTTATTCCGAATCAGACGGGGAAATGCACTGGAGTA
Found at i:12605 original size:6 final size:6
Alignment explanation
Indices: 12594--12623 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
12584 GAGACAAAGA
12594 TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC
1 TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC
12624 ATAGATAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
TTTGAC
Left flanking sequence: Indices 12094 -- 12593
TTGAGATAATAGATGAATTCAAAGATAATAAAGCAGAAAGAAATAAGAATCAGAGAATACAATAA
TGAGAAATCCTCTCTTCCCCGAAGATAGTATTTCTCATCCTAATCCTAAGAACCAGGATACATAT
CAACCTGGAAAGCTTAGACCAAGCCATTGTGCTATATGAGAAAATGATCATAAGGAAGGAATACA
AGCTACTAGAGAACCCAGCCCTTCAAGCTATCCTCCTCGAATGCTTAGACCTTTCAATAAGATAA
GAACCATTCACATGACCAACGGATGAAAGAGAGAATGCCAATCTGGCACACCCATAGGCAGTAGA
AAACTGTATACGCGACTCCCTCCCCTTAGAGTAGAGCAAAAAAAGGGAATAGAAGTTAGGAAGAC
TACTGACGTAGGGCGGCGGGTGAGCTCAACCTCGAACCAAACAAGCAACGGATTGAGCAACTAGC
GCTAGTTGCGGCGCATCCTCTTGCTGGGATGGTTTGAGACAAAGA
Right flanking sequence: Indices 12624 -- 13123
ATAGATAATGCTTTCTCGCTACCCGCCCGCAATGGTTCACTGATCAATACTTCACAAAGTCATCA
ACATGTGATACGACAAAACTAGAAATCAAATCGTTTGTGGCTGATCTCTCCATCTACTTACTTCT
ATTGGACCCATAGGACCAGCGCTCACAACAAATCCAATAAGATAAGATAAGATCTAATAATGAAA
CCCGGGAACACTAATTCAAAAACAAAGCGATAGCAATGTTTATAGAAAAAGCAAAACAACACTCA
AGAGAAACTCCACCTAGAACGTACCAGTCAGCACTTCGTTATTGTCGACCGCGCGGATCATCATA
AGCAACAAAGTAGCAAATACGCGTCGGTATCACATAAAGAGACAGGCTCCACAAGAACATTCGTT
CCTAGGTGCATGACTTGGAGGGGAGCTCCTTCTTGCTAAGAGTGCCAGTGGATTCTCCTCCTATT
CCTCGACTCTTTATTAAGGAGACAGACCGGTAATCTCGCTTCTGA
Found at i:14953 original size:6 final size:6
Alignment explanation
Indices: 14942--15157 Score: 432
Period size: 6 Copynumber: 36.0 Consensus size: 6
14932 CTTGTTTACT
14942 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
1 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
14990 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
1 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
15038 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
1 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
15086 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
1 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA
15134 ATAAGA ATAAGA ATAAGA ATAAGA
1 ATAAGA ATAAGA ATAAGA ATAAGA
15158 GCCCACCGCT
Statistics
Matches: 210, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 210 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
ATAAGA
Left flanking sequence: Indices 14442 -- 14941
AGGTTAAAAGCCCAATGCTCTACCAACTGAGCTATACACCCTATTTTACAAGAAGGCTTGGTGCG
GAAAAGAGGGTGGCCTGGCCCCTTTTCTTCTTATCATATCACAAGGGCGCGGCTCTGTATGGGGC
TCGTACTGCGGAGCAAGTCTGGGAGTCCTTTCCACTCATTGAGGATTCTATCTAAAAAAGAAGGT
CAACGGGGGAGACTACAGTAGCTCGAACTCAGACTATCTACGAAAAAGCTAAAACTCCCTTGTCT
TCAACTATGAACTTACATCTATCGATAACACGGGCTTCTTAGGTCAATCACATCCCCAGGAACTT
CTAACTGGCCTAGCAAGGACGGGCATCTTTCATCAATTGATTCGATTTAACGAGAGGCTCGGAGA
TGGTATACGTAGAATAGGGGAAAGTAAAGACAAACTTCGGTCAATTTACGTTTTCAAAACTACAG
CTATCTTGCCTAGAGTCCCAGAGCTTAACGGAACTCTTGTTTACT
Right flanking sequence: Indices 15158 -- 15657
GCCCACCGCTTTATAAGTGCTTTCCTCTCTCTTTCTTTCGAACCATAAACTCCGAAGCGGTTTCA
CTTTACCATACTGGAGAAGGGCTTCACTCGCGCCTTGGGGACAGAACTAGAGTACAAAACTAGCT
TCCTCTGTACATATTGTTTTCGGGTAATAATACTATCATTGAGAAAGAATAGATAACGACTATCA
GGCATATGACTGATTTCTATATGGGTGTAGGCTCATACTCTCATTTTATCCTTGCTCGCTGTTCC
CGACAGGAATACGTCACTTAAAATAAGCTATTGACGTCTTAGTTCCGACCTTGTCTCCTTTCTTT
CTTTTGTTCACCGGTGCAAGGCAAGGGCGGAGCTCTCTTATGTTCATCTTCCACGCCTGTCTGCA
TCCCAAGCACTAAATGAGTGAAATCCAATCCCGGAAAAAGGCTCTCTTGCATCTTTTGCTTCCCC
ACCCGGCCTCTATTCTAGATTCACCGTCTTCGGATGCATCAGTTT
Found at i:18870 original size:5 final size:5
Alignment explanation
Indices: 18860--18918 Score: 111
Period size: 5 Copynumber: 12.0 Consensus size: 5
18850 TCTCAACTAT
18860 TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA
1 TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA TAAGA
18910 TAAGA -AAGA
1 TAAGA TAAGA
18919 AGAAATGCCT
Statistics
Matches: 54, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.07
5 50 0.93
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.19
Consensus pattern (5 bp):
TAAGA
Left flanking sequence: Indices 18360 -- 18859
TTCCCGTAAAGCTAACTGTAGTCCATTAAATAAGTAGATATCTTAGGCAAGTTAGCAATCCCGTT
ATATTACCAAGGCCTTCCCTTCTATTGTAGAAAGAGTTCTCAGCCATCCAATTGCTGTACCAGTT
GCCAGCTATCCAGTTTCATTTGAAGTTGCAGGGGGTCGAGCTAGTAGCTTTTATTCGTCCTATAA
GTCCTTCCACAAGCGAGTCAATAGGGTGCTGGCTAGTTGTAGTTGTTGGCGTGCGTGGAAAGAGC
GAAGGGCCTAAAAGTTTGAACTGGAAAAGATTCTCTATTACAGCAGCATATTCTCCTTCTTAGTT
ATCAAAAGAAAAAACTCCGTTTATGCTACACACTCAGAACTAGAAAGAAAGCTATTGAAGAGGAA
GGTGCCGTCCATCAAACTGCTTGCTTCATTGAGTAGATAGAGTTTGAAGTAGAGTATGACACATC
AGCGGTAGAATCATTCTTGCATATATATTATTTCATCTCAACTAT
Right flanking sequence: Indices 18919 -- 19418
AGAAATGCCTATTTCAAGCACTGGTATAGAGCTAGCAAGATAAGGGAAAGACAAAGCAAGAAGGT
TCTCCAGTAGGATGATTCTCGATGCAAGAGATTGCACTATTTAGGTACTTCACTAGCAGGAACTA
TTCTTTTGCAAAGAGCTTATTGAACTCCAAACATTATATTATTTTGATATTGTTATAATAACCCG
CTAATTAGATAGGGGCCTAGCCAATAAGAGAGCGCCAGTATGCATGCTTATGGACGGACCCAGAG
AGCAGCTTAATAGAGAGAAGTAGCAGTGAGGGCGCTAAGCTGAAGGAAAAGGCTGAATGCCATAG
GAAGTTCTCGATGAATAATTCACTTACTTCGTTACTGCTGATTCGACAGTGGATCATAGCTCAAA
GAACCTATTCCAGTGAACTTGACTACCATTGGAAATGTCGGTGCCGTATTTTCATGTCTTGTTTG
GAAGGTTTAGCCAAATAAGCGAGCTAACCTTTTTACTTATACCCG
Found at i:22999 original size:18 final size:18
Alignment explanation
Indices: 22976--23011 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22966 GAAATCAACC
22976 TTAGTATTAGTAAGAGTA
1 TTAGTATTAGTAAGAGTA
22994 TTAGTATTAGTAAGAGTA
1 TTAGTATTAGTAAGAGTA
23012 ACCACTTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (18 bp):
TTAGTATTAGTAAGAGTA
Left flanking sequence: Indices 22476 -- 22975
CACGCCAAACCGAACTCTTATCACATTATTTGTAGGCTTTGCTATTCTTACTCCTCTGTGACCTT
CATCAATCACTAGGCACAGTATCAGTTAGCGTGATATGGGTTGGTAAAGTAGTAAAGAAAGTCTT
AGTTATTAGGAAAGAAATGTTGCAGCCTATCTGCCACTGAGTTGGAATCGATTTGCTTAACCTGC
TAATGCACGGAGATTAGCCAAATTAGAGAATATGAGGACGTCGGCAATGGTTGGTTTTAATGCTC
GCACAGACGAAATAGAATACCGGATTGGACCTTAGCCGCTCGGGAATAGAATCCTTCACCACCAG
GAAAGGCAATCGCCACGACGCTGACATCTTTTCATACGTACTAGACCCGGAGGCAAATTCGGAAG
AAGCCGCTTACACGACTTCCAATACAGACAACTCAAGCAAGAGGTTTGACATCACTCCTGCAACT
GCAAGACAAAGACTCAATCAAGAACCAGAGAAACTGAAATCAACC
Right flanking sequence: Indices 23012 -- 23511
ACCACTTCTGGCTCGTTAATGTTTCGCTTCTTTGTGAGCAGCTCCTTAAAGAACTTTGCATACAT
CGGAACATGTAAGACAGCATCAAGGATGGGGATGGTAATCTGCGCATCTTGAATCATCTCAAGAA
ACTTAGCAAACTGCTTGTCTTCACTTGACTTCTCAAACCGTTCTGGAAATGGCTGCTTCGGCTTG
GTAGGTGGAACTGAAGTCGAACTGATTGATGATGGATCATTAGGAGCTATAGCTGGTGGTGTAGA
AGAACTAGGCTGTCCAGCAGTAGTAGTAGTGGACTGCTGAGGTACCTGCTGGTCCTGTGGAGAAG
GTTCATTTATCAGGAATCTACTTGTTGCATAATGCACATGCCACAAACGATAAAGTGGAAGCACA
CTCAGATGAAGAGGATGGTGAATTGATCAATAATCCCATGTCTTTTTTTGCTGAGAAATCTTGGA
TCAAGACATACAAGGCAGCATTGGTCAAACATAGGACTACCTAGG
Found at i:28593 original size:21 final size:21
Alignment explanation
Indices: 28563--28616 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
28553 ATCCAAGGGC
* *
28563 AGAGCAACGTAATCCAACGGA
1 AGAGCTACGTAATCCAACAGA
* * *
28584 GGGGCTACGTGATCCAACAGA
1 AGAGCTACGTAATCCAACAGA
28605 AGAGCTACGTAA
1 AGAGCTACGTAA
28617 ACAAGGAACA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (21 bp):
AGAGCTACGTAATCCAACAGA
Left flanking sequence: Indices 28063 -- 28562
GGTTCCATCTACTTTATCCGCATCCGCTTTTGGGCATGAAGAACATGCTTCTTTCTCAATTTATA
GGAATCGTTAACCTTTTCATTGGATTGGTTTTTTGATGCAGTAGAGAAGCCGTTTCCTTTGAACT
TGGTCCATCGGACAGATATAGACATGGAGAAGCTTTTCAATGTAAATCTTTCACTACTTTGTTTG
GACCTTGCTTCTTCACTTAATGCTTGCTTTCCGTCTTGCCTTTGCTGGGCCTACGATAGGCTGTA
CTCCAATACGAAATAAGATTGTACATGAAGGTTGGTGAAAAGCAAAAGAAGCAATTGGTTCTCAA
ATGCCGTGACGTCACCTAGCTTTATTCTAAATTTATCATTCTATTGGTATGTATAGTGTCTTTCA
TCTGCTTTTTCATTCATTCTGCCCACAGCCGTTAGGTATTATGACAAAAGGAACCAGCATGTTGC
GGAGCAGCCAAGTAAACCAAGAAATGACTCAAGTAATCCAAGGGC
Right flanking sequence: Indices 28617 -- 29116
ACAAGGAACACATGAACCTGCTAAGGATCCATTCCACCTGCCAAGTAGACCAATCACAAGAGCTC
GGGCCAAGAAATTCAATGAAGTAATCCATATCCATATGCTGATTCAGCAAGCCAAGCAAGATGTG
GTGGAGAATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGTTTGGTAA
GATTACCTTGGGAAGTCTCAGGGACTGACTGAACCGAATGTATAGCGTCAAGATAAGAAGCACGC
ACTCCTACTAGACATGGAAGGAGTAAACCTCAAATATGCTTTCTTCCCTTAGGTATGTTTCTAGA
TTCTAGTCCGAAGTCGGTCGTTGATAGATTTATTTCTTTTGCTTGCTCTCCGTTACTTTCCCTTC
CTATATTTAGAAATCGATGTAAAGACAATAAGAAAGTGGTTGAGACAGAAGATTCTTGGTAGTTT
ATTGGCTCTAAGTACAATGGGTACGTAAGTTATGTGTTTTGTTTC
Found at i:32246 original size:5 final size:5
Alignment explanation
Indices: 32237--32307 Score: 106
Period size: 5 Copynumber: 14.2 Consensus size: 5
32227 TAGGCTCGCG
* * * *
32237 ATTAG ATTAG ATTAG ATTAG ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
32287 ATTAT ATTAT ATTAT ATTAT A
1 ATTAT ATTAT ATTAT ATTAT A
32308 CGCATGAGGT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 65 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (5 bp):
ATTAT
Left flanking sequence: Indices 31737 -- 32236
TTTTGTGTGAAGTAAAAGAAGAAAAGGTCTAGACTCCGTATAGACGGAATCTAAGATAAGAACCT
AACAGAAGTTTTTGTTTGAAAGTGTGCAGTGAAGGAAAGTGTGTCGGGGTCAAACTGGAATTGCA
AGGTCATTCATTTCAGGTAGACCTGAGGGTGATAGATTTGGGAACATATGATGTAGTTCTTGGGA
TGGACTGGATGAAGACCATAAGCCCCTTTTATTGGGACAACAAGTCTTTGACCTTGTCGTTAAAA
AGAGGACCAGACCAACTCATTCTTAAAGGAAGTTGTGGATTGAACATCTGGAAAAGATATGCTAT
TTGTGTAGACAGAAGGGAAGAAAATGTAACCTTGCTCACGAAAGCCTTGCAACAACTATGCGGCT
ATAAGTTTCCTTCTTTCCATTCTGTTTATTTTCAGCACTAGACTCCACATCAGGATAAGCTTCTT
TCTATTAAAGAAATGTCGATTTCCCTCTGTTTGAGTAGGCTCGCG
Right flanking sequence: Indices 32308 -- 32807
CGCATGAGGTAGTAAAAGCGAGTTATAAGCTCTTTTCTCTAAAGAAAGTAGGCTTCTAGCAAGGC
CAACTCTATCCTGCTCAATCCCATGCTTATCATTTTCACAGATATGAATTAAATGCCATATATTA
ATTGAAATGGTTTTCTCCTCCGAATTGACACCCAAAAGGGATATATATAGCCTTCTAGTACCTCA
ACCCAGAAAGCCTTACACACACTCTGATGGGAATTAACCTAGAGTAGAGTAGAGTAGAGTAGAGT
AGAGTAGAGTAGAGTAGAGTAGAGTTATTTTATTAGATATTACATTTCTAGATATAGGCAAATAT
AGGTGTTATCAAATCCTAGAGGCATATGACCAGCCGCATGCTATTAGTATAGGGTCAGCAATACC
TTGTGAGCCATGGATTATTAAGATTCTAGGGGCCCTAAAGGATGGATCAAGCATTATTGAAGGAA
TAGCTCGCTTAACAACCCCCGGGGGAGAGTATAGATGAATGCCTT
Found at i:32552 original size:5 final size:5
Alignment explanation
Indices: 32542--32592 Score: 102
Period size: 5 Copynumber: 10.2 Consensus size: 5
32532 GGAATTAACC
32542 TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG
1 TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG TAGAG
32592 T
1 T
32593 TATTTTATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 46 1.00
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.22
Consensus pattern (5 bp):
TAGAG
Left flanking sequence: Indices 32042 -- 32541
ATCTGGAAAAGATATGCTATTTGTGTAGACAGAAGGGAAGAAAATGTAACCTTGCTCACGAAAGC
CTTGCAACAACTATGCGGCTATAAGTTTCCTTCTTTCCATTCTGTTTATTTTCAGCACTAGACTC
CACATCAGGATAAGCTTCTTTCTATTAAAGAAATGTCGATTTCCCTCTGTTTGAGTAGGCTCGCG
ATTAGATTAGATTAGATTAGATTATATTATATTATATTATATTATATTATATTATATTATATTAT
ATTATACGCATGAGGTAGTAAAAGCGAGTTATAAGCTCTTTTCTCTAAAGAAAGTAGGCTTCTAG
CAAGGCCAACTCTATCCTGCTCAATCCCATGCTTATCATTTTCACAGATATGAATTAAATGCCAT
ATATTAATTGAAATGGTTTTCTCCTCCGAATTGACACCCAAAAGGGATATATATAGCCTTCTAGT
ACCTCAACCCAGAAAGCCTTACACACACTCTGATGGGAATTAACC
Right flanking sequence: Indices 32593 -- 33092
TATTTTATTAGATATTACATTTCTAGATATAGGCAAATATAGGTGTTATCAAATCCTAGAGGCAT
ATGACCAGCCGCATGCTATTAGTATAGGGTCAGCAATACCTTGTGAGCCATGGATTATTAAGATT
CTAGGGGCCCTAAAGGATGGATCAAGCATTATTGAAGGAATAGCTCGCTTAACAACCCCCGGGGG
AGAGTATAGATGAATGCCTTAAGCAAGGGCGTCTAAGCGTGCATGTACACAGTTTTTCATGCCAC
AACACATCGGTGAAACCGGAGAGAGCTGAAGAGAAGGGGAACCCCAGAGGCATTGACCATTTGGT
ACAGCCGCTAATTCGGCATTTGGTACTGTCACCATTTCTCGAAAGGGAAAAAACATACTTAACAA
TTCGATTGGCAGGACCAAGGGATAGATCGATTGCAATATAAGTATCATACAAATAGAAATAGACA
TGAGTACATGAATAAGGAAACGCAAAAGACACAGAGTAGGGCTAG
Found at i:39054 original size:6 final size:6
Alignment explanation
Indices: 39043--39210 Score: 336
Period size: 6 Copynumber: 28.0 Consensus size: 6
39033 CAATGCAAAG
39043 TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA
1 TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA
39091 TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA
1 TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA
39139 TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA
1 TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA TCTTTA
39187 TCTTTA TCTTTA TCTTTA TCTTTA
1 TCTTTA TCTTTA TCTTTA TCTTTA
39211 GTAGAAAGAG
Statistics
Matches: 162, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 162 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
TCTTTA
Left flanking sequence: Indices 38543 -- 39042
CATATTCATAAGTAAGATGGCAAGAAAGTTCTATCAGTACAGTAATAAGAAGAAAGACTGATAAA
GAAGACCTTTTCCTAGCATTTGCTTTCCAAATCAACTTCCATACAGGACATAAAAATCTTGCTTG
CTTTAGAGAAGATTCTAAGAAGAATAGACAGAAGACAGACTTATCGACTAAGAACCGAACAACTA
CTGGAGTAAACGGTTAACAATCATTGGGTAGATGAGCCTACATACCGTCAACTTCTTGATCGCAG
AAAAGAGGATATAGGAGAGTTGTGTAGTTCCACTCCATCTACAAAAGAGAAAGGCACTTGCACAA
TACTAGCACAAACCATCTTCTAGGATGATAATGCATAAGCACGAAGCAGAAAACCAAGCCAAATG
GCTAAAGTCATGTATGGAAAAGAAATAAAATAGAATGTATTGCTTTCTTATGCCCAAGAAAGGGA
AAAGGAGCATATAGGTACGGCTTTTGACTACAAAGCAATGCAAAG
Right flanking sequence: Indices 39211 -- 39710
GTAGAAAGAGGAGCAGAAAGAACTCTTATTAGGCTTGCTTGTGATTCAGAACCAGCAAGGAAAGA
GTAGTCGTTTTCAAAATAGTAAGTAAGATGCCGGGATAAGAACTGTGTGATTTCCGCCTTAGAAA
ATATCTGTCAAATGGGTCAAATGTAGAATTAGATGTGTAAGCAAAGCTCTGATTCCCCTTGCCGA
CTTTGAACGAACACAAATTGAAACAACGCAACCGTACTATCTATTTACGATAATTTGATTGCTGA
CAACATCACGCTTCTCTTTCTTATTCTTTTTTATATAACTGTCACTTTACCGGGCCGGAAAAGTG
ACACCGTCACGTCTCAGGGTCGTATGCCTGGAACAAGAAGGGTCGTCGTACAATTTCCATTTCGG
CGATTACAAAAAAGAAGGAGGCGAGCTCCCTATCCCTCTTTGTCTTTCCACTTCCCTCGTTCAGG
AACAAACACTTCGTAAAATTCTTTTGAGTCCCGGCCCGGTTTTTC
Found at i:49942 original size:5 final size:5
Alignment explanation
Indices: 49936--50031 Score: 158
Period size: 5 Copynumber: 19.4 Consensus size: 5
49926 GGGTGCAAAC
*
49936 TAAAC TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG
1 TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG
* *
49986 TAAAG TAAAG TAAAG TAAAG TAAAG TTAAG TTAAG T-AAG TAAAG TA
1 TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TA
50032 GTTGACAAAG
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
4 4 0.05
5 84 0.95
ACGTcount: A:0.57, C:0.01, G:0.19, T:0.23
Consensus pattern (5 bp):
TAAAG
Left flanking sequence: Indices 49436 -- 49935
TTATCATAGGTTTAAGGTCAGACAGAGACAAGTATGGATTTTGCCGGTTCTCATCTAGCCATTTC
TTATGTGTTCGTCTAGTTTCTCTTTAAAAGTATCTTCGCCCTCTTACTCAACCAAATGCTGCTGC
AGTTTCTCACAAGTGGTATCAGATTCCATCGATCCTCGGGCTGACCTTTAGTGTCTCAAATGCTT
GGATGTCCAGGTAAATGAATCTTTCTTTAAGAGATCCTATCCTGTAGTAGACGACATATGTTCCC
GTAGTCTTTTATGAATCTTCTGTAGTACCCACAAAGACCCAAAAACCCTCGCCATTCTGTTACAT
TGCTTGGTTGCATCTCTCTATTCAGAATCCATAAGGTGGAATTCCACTCCCAAAGGAAAGGGAAT
TTGGTTGTTAGCTTGAGGGGCAAGGGAAGCTATTCATTCATGTGCCGGTGATGGAAAAGGAATTG
CTATCTATAAAGATAGCTGCTATCTTTGGAACTAGGGGTGCAAAC
Right flanking sequence: Indices 50032 -- 50531
GTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTGA
TAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTGG
CATATGGTTTGTTGTCACCACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTGT
TCAGTTCACGTTTAGGTCAGTATAGAAGTCAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGGT
TTCTAATAGGTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACGG
GTAGCCAAGAGAGACGTATTTAAGACTTTGAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTAT
AGCTTAGATAGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATAG
CGGGCGAGATATCAGGAGACAGGACTAGGACTTTGAACGAAGCAG
Found at i:53012 original size:5 final size:5
Alignment explanation
Indices: 52942--53011 Score: 113
Period size: 5 Copynumber: 14.0 Consensus size: 5
52932 TTACTTGACT
*
52942 TACTC TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
* *
52992 TACTA TACTA AACTA AACTA
1 TACTA TACTA TACTA TACTA
53012 AGAGTAGTAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 63 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.37
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 52442 -- 52941
ATAGCTGAAGGCAAGGCACTTTATGGTTTGAAGCAGGCACCCAGGGGATGGTACCACAAGCTCAA
GACCTTTCGATAGTCTCTCGGCTTCTTTCTCCTCTAGCCGTTGAGAAGCAAGCCTTTGCAGTGCT
CGCAGTGCTTTTCCAGGTAGGCAAGCAAGCCATTGGAGTGCTTCGTAGGCTGTGCTTTATCAAGG
CAAGCTTCTCTTTCTATTCTATAAAAAGGCTCCAATATGCAGCCTCACAAGGAGTCCGTCCAGCT
TACTCGTGCACTTTACCTAAACCAACGTAACGCATCTTTTTATACCTTTCCCCTATTCCTTGTAT
ACCTATTTCGCGTGCCACTTTCCCTTGCCTATTAAGCAGAAAGCCGTTCATGCCGATCTGCTTCT
CCAAGCTAGCAAACCTATTATTCCGGTGACAAAACTCCATGAATTTCTTCTTTACCTATCTAGGG
TATAAGCTTACCCATCTATACTTGACCCAATGCTTTTACTTGACT
Right flanking sequence: Indices 53012 -- 53511
AGAGTAGTAACAACTATTCCTTCGCAACTTCGCCCTTCGCACTTACCTTTCGTCCGGTACGTTGT
TCAAATGTTTTTCTGGGATTATGTTGGTGATCTTGAAGGGTTGTGGGAGTATGCATGGGGGCAGT
CTGTTGGTGACAACCTGTTGAACTCTGTTTATGCTATTGGTAAGTGTGTGCAAGACTTTATGGCG
GATGAGAAGATTCACAAGCCTACGCTGCTTGGGCCGCATTTTGCTTTGCTGGTAAGAAAATGCAG
TAAGTTTGTTTTTTTCCGTCCTGTATTGTTGGTGGGTGATTACAGTATGGCTTTAACTACTAATG
TTTGCAATCAAAAGGTTTGGCTGTATGAGCATACTCAAGTGGTAAGTCTACGACTTGGTTGGTAT
CTGTTTCCTCGATTTAGAAACAGGAAGCTTGAGAACCAGGAGTGAGTTCGTCCCAAGGGTGGGTT
CGTGAGATGGATAATGATAGGTTTATCATGCAGCCTTTGTATACG
Found at i:64976 original size:5 final size:5
Alignment explanation
Indices: 64966--64997 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
64956 TTCCTTCTTT
64966 ACTAA ACTAA ACTAA ACTAA ACTAA ACTAA AC
1 ACTAA ACTAA ACTAA ACTAA ACTAA ACTAA AC
64998 AGTACCTGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (5 bp):
ACTAA
Left flanking sequence: Indices 64466 -- 64965
TGCTCTCCGAGGCATATGACTTTTCCAGCTAATCCGTTAATCCTATGACCGGAGGGCTGCCTTAT
CGATTATCCCCGTTCGAAGTCGGCTTTGCTTCTGCTTGTTTTAGCTTATACCCCTGATCCGTATA
TCTGCCTTGGCCCCGCTTTGCATTCATAAATGTCACTATTCGTCGAGTGCTTCCTTACCTGTTTA
TCACCAGCTCCCATTGCCAACTCTAAATTACATGAATTTCACTAGTCCGCCAATCCAATTAGGAT
TGTCCTCCCGTCGGTTGCATCGCTCCTGCTCGCAGTAGTCGTTTCTTTGCCGGTGAATAAATTGA
TTCTAAACAGAATAAGGCCGGCATCCTGCTCTCGACTATCCCTACCTTGGTAAAGTTACTACTCA
AAGGATGGCTTTTCTTTCCTACCTACTATTGTATTTGATTCACTTCTTTTCAAATACGAGGGTGA
GGGATATTCCTCGACCGGTTCCAATACGAGGATTGTTCCTTCTTT
Right flanking sequence: Indices 64998 -- 65497
AGTACCTGCATCCTGTTAGGAAGAAATGGAAAAAAAAATGGAAAGATATTTCAATTTCTCAAGTC
TTCCACGAGCTCTCTCTCTTTCGTAAACCGCCTCTTAAGGTCGAAGATATAAAAAATCATACTAA
ATCTAAATATAGTAGACAGAACCAACCATTAGCCCTGTCTCTTGCTGTGATTCCATTCCCGGCAC
CAAGCCAAGTTAGCTCGAAAGCAAGTAAAGAATTAGCTCAAGTAAACAGAAACAGAAAGAATCAA
AAGAAAAAGAGCAGCAAAGCTGGAATGAACCTTGTCTAATAGTATACCTTCTTCGATCTCACGAC
CCAGGTAGCAGTAGGCAAGTAGTGAATCATACCCCATTCTCTAACTAGAACTCCGGGTGAGCTTT
TCAGGGCTATGACGAGGTGCGAAGCAAGGGAAAGCGGTCTTCTTTCCTTTCATGGACCTTTATGA
ATCGATAATATGAGGAAACGGATGCTCCAAAGAGACAGAGTGGCA
Found at i:65877 original size:7 final size:7
Alignment explanation
Indices: 65865--65893 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
65855 ACCGAAAGGT
65865 TCCATCC
1 TCCATCC
65872 TCCATCC
1 TCCATCC
65879 TCCATCC
1 TCCATCC
65886 TCCATCC
1 TCCATCC
65893 T
1 T
65894 TTAGTAGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.55, G:0.00, T:0.31
Consensus pattern (7 bp):
TCCATCC
Left flanking sequence: Indices 65365 -- 65864
AACTAGAACTCCGGGTGAGCTTTTCAGGGCTATGACGAGGTGCGAAGCAAGGGAAAGCGGTCTTC
TTTCCTTTCATGGACCTTTATGAATCGATAATATGAGGAAACGGATGCTCCAAAGAGACAGAGTG
GCAAAAAAGTCAAGGTAGAAGGGGCAGTCGTCGCTGAGCACCTTTCTTTCCATTTTTCTAAGAAA
GGGGTGGACATCTTCAAGGCGATTCCCGTGGGGCCTGGTCGCACAAAGGATGGTAATTGCACAAT
GGCCCAAGTCTACCCAATTAAGAAAGGGAGCCAGGAATTGTGGATAAAAAATAAGAAAAGAGAAG
TGTTTAGCCGTACCAAGCAGGCACTTCTGCCGCCGACTCCCGCCAGGTTGGCTACCTGTCCATTC
GGGGGTATATAGGGTGCCCAAGGACTCCGGTCTAAGGGCGGACTGAATCTGAACTGAAATAGGGG
GATAGGCTCTCGGGCGTCCTACCTTAAGGAAATGAACCGAAAGGT
Right flanking sequence: Indices 65894 -- 66393
TTAGTAGACTAAGTTTGAACGAGTCTCCATCTCCGCCTACATGTGAGAGTGGGAGTGGGAGGTCT
AGGTTTAGCTCAGAGGAAAGGAGTGAAAGCGCTGTCCCGAGGGGACAAGAGAACATCGTTTCTGA
GCGGCTTCTACCTTTTTTATTTTGAACGAACCGCTGCTAAGCATAAACAAACCAAGCAAGCAACA
ACCCCAGGAATCATAATCCTAGGGAACAAGCAAGCAAGAAAGAAAGTAAGTTCAGTCTCTTCTTT
AGGAGTTCGCACCGCGTAGTGGGCTTGGCTTCTATCTATCTCGGGGAAGGAGCCAGCCCTATTCA
TGGCAAGGAGTGAACCCGCCAGCCCCATAGCAAAAGCAGGGGGGTATCTGACCCGAAAAGTTCTA
TTTCAGGGGGCAATGCCCACAACTAAGTAGATAAGACCTGGATGTAAATTGGAAAATTTTTTACC
TATATCAGTCAAAGCGCTATTTGAGCCTACTATATGAATCTATCT
Found at i:72836 original size:6 final size:6
Alignment explanation
Indices: 72825--72861 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
72815 CGACTACTAC
72825 ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG A
1 ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG A
72862 CAACTACCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.32, T:0.16
Consensus pattern (6 bp):
ATAGAG
Left flanking sequence: Indices 72325 -- 72824
CATCTCTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGGGTATCCGCTTGGGACTGATAGGAAACA
GCATATCTTTTTTTTCCCTCCTGACCCCATATATAGTTGCAGTCCGGTCGCGTCGGAGACATCCT
TATCAGATTTTGAGGCTTCGTCGTCCGGCTCCTCCAAAATTATGTTAGGATCGGCTGGCTCATCC
TTATCATCCGAAAATAAAACAAAGACAAAACAGATTTGTTTCAATGACATATCTAATCAGACTGA
AATTGATGTCGAAGACACGATCATTCACATCAATTTCTGCAGGCAGGAAGGGCGCGGAAGCTACC
GTTTAACGAATGCAAGCAAGGTAGCTTGCTTACTCTCCATCTAGCGTGCGTTGGCGGCAAGGAAA
GAGGCATTGGAAAGACTAGACCATACACATTAATTAGTACAAGAAAGAGGCATTCGGGAAGCGAC
TAGTCGCTTCTGGCGAAGCTTAACTTAACAAAGGCCGACTACTAC
Right flanking sequence: Indices 72862 -- 73361
CAACTACCAGTCATGAGCGATAGTGAAGCTGTCGCTTGACGGACGAAGCCGAACCGATACGATAG
GCGGGCGAAGTGAGCGAGACCAAGACGGGCCAGACGTGGAGTGGCGAAGGGGGCCTACTATACGT
ATACGTGATTAGTAAGCGGTTCAAGACATCGAACGAAAAAGAAAAAAAGAACTATTGAACAGTGT
GATTGATCAGACAAGTACTACTTGCAAGGAGCAAGAAAACGTATGCGCAGGCGCAAGGGATGAGC
GCTCAATCCGTTGCTTGTTCTTTCGGTAGCCTTCTTTCATTTCCGAATTTGCTTGCGAGCAGTCC
TTGCATTAGTATGAGTTCGTTGACCGCGTAATGGCGATCCATCTTGATGACGAATTCCACGATAA
CGAGAAATAGAAATTAATCGTTCGATGTCTGCTCGTTCTCCCCTCTTCAATTCCCAATGAACAAC
ATGATCTTGAGCTATCATTTGTTCAATTTGGTCGATCTGATACTT
Found at i:77002 original size:6 final size:6
Alignment explanation
Indices: 76987--77016 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
76977 CTATATTCAC
*
76987 TAAGTT TAAGTG TAAGTG TAAGTG TAAGTG
1 TAAGTG TAAGTG TAAGTG TAAGTG TAAGTG
77017 AACGAAATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.37
Consensus pattern (6 bp):
TAAGTG
Left flanking sequence: Indices 76487 -- 76986
CCGCGACAACAAAAACTTAGTCCCTTGCCACGCTCGCTTAAATGTGTCTTTCTTTGATAAATAAA
TACCAAAAGCAGAGCCTTTCTTCCCTTCCTCGACACAGTGGATTGCTTTTTTGCCAGGAAATGAG
ATGCTTTTCCTAGACTTTGGGCTTGCATCCTTTTCTCTACTTCCTATATTGAAAGAGTGGACTAC
AGAGGCTGAGCGATCGATCAAATAGGATAGGATCCTAGCTGTCAATTTCCTTGAGTAGAAAGGAA
AAGAATTCGCCTAAAATGCTTGTTGGGGTAGGTCAAAGAGTATAGGTTTCACCCGGCGTAAGACA
GAAATCCTAGTCTCGATAAAGCGTGTACCAAAGAGTTTAAAGGGAAAGAAGCAAGGGTAAGGGGC
TTTGATGAAAAATAGGTGGTCCGCGATCCTTAGGGTCTTTAATAAAATAAATAGGGAGAAGAGAC
AATAACTAGCTGACTTAGCGTCACCGATCACAGTTCTATATTCAC
Right flanking sequence: Indices 77017 -- 77516
AACGAAATGCTGATTGCTTGCAGCACTAGCCGCCCAACTATTATACCTTGATTGGGGAGAGCAAG
GCTTTGTGCCCAAAACAAACAACCTAGCTTGCACTAGCTGATAGAAATAAGGCTCCTTTCTATCT
TGACTCAGCGATATCAATACAATAGGTTATTCCCCATCTTGCACTTCTCGGAAGAAATAGTGCCC
CTCTCTAGGACTTCCTTCTCTCACTCTCGAGGAAGCAAACAGGGCGGGCCAGTCCTAACTGACAC
TGTACTATAATTGGACAATAGCGGCTAGACGGAATGGACAATAGCATTGCTATCCTTAACTAACC
GCTAAGCGGTTCGAGACATCAACAGAAGTAAATAAAAGAGATACGCTTCATTTGCAAAGTAATAC
ACAAGCTCGCTGGCCAGTGAAATGGGGCATACACCGGTATCGGCAGATCAACGAATTCAAACTAG
CTTTTCAATCATCAAGAAAAGAAATAAGTATCCCTAGCTTTCGAT
Found at i:78282 original size:6 final size:6
Alignment explanation
Indices: 78271--78295 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
78261 TAAGCAAAAC
78271 TATTGG TATTGG TATTGG TATTGG T
1 TATTGG TATTGG TATTGG TATTGG T
78296 TCTATTCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (6 bp):
TATTGG
Left flanking sequence: Indices 77771 -- 78270
CTACGGCTACTAAGTAGTTTACCAATTAATAGAACCTTGCTGGGTACGATTCCAGCTGACTTCCA
CCGAACTTCGCAGAGCACGGTCAATATGCTATCCTTCTTCCTTCTTTTCCTATTCTTTCCTCAAT
CAAACCAACCCATCTCTTCTCCACAGGCACTCAATCCCTATTTGAGACAGCAAGACTGACCTATT
ATTTATTTGCACTTCCCGATATCAAGAGGTTCTTACTTACCTTTGACCAGTAAGACACGAATGAT
CTACTCATCAAGGGATGTGATGGCCCATCAGGATAGGATCTTACGACGAGTGGATCATCCCTATA
CTTAACTCAGCCCTGTGCTATACTCGAGAGTAGGTGGAAACATTAACGTATCTATCTTTTCGCTC
CCCTCCTGCCTACCCCTATGGATTTGAATCAAGAAGCAAGGGCACCACTTCGCGTATCTATTTAG
ATTTCCTATTTTGATAGATAATGGAAGAATTCAAATAAGCAAAAC
Right flanking sequence: Indices 78296 -- 78795
TCTATTCTCGTGCAGGGTCGCCGATACTCGTCGGTACCCTCTTGTCCTGGAGCCGGTGGAAAAGG
GTGGAATTTCCTAATCCCGTGTCCAAGTTAGTCTACCGAAATCTGACCATGGCTAAACAGGGCTT
TTATCTTGAGCTGCTTCAGCATACTACTACGATCAAGGCGGAAAGTCCAGTGCTTATTGATCAAA
GAAGAAGCGATAGGGGTCTTCTTAAGATAAGAAGAGTTGCTTTGATGAAAAGAGTGTAGCCATGA
TGGCAAGTCAAGGTGGGGCCCTGTGAAGGCAAGCCTTGTGTATGTTGGCGTGATGACGAGAGAAA
GGAAATGACCTTGAACAATAGCTGTCTGTAGCACACCCTGCAATGACTTCGACCAGCGGACCAGC
CTATCCAATACCCTACGCCATGCTTGATGGCTTGGCCTGTGGCTTTGTTGACCAGTGCAAAGGCC
CGACAACCGTTCTGAGAGTCGCTGGAGAATGGCCAATAAGCTGGA
Found at i:79018 original size:6 final size:6
Alignment explanation
Indices: 79007--79058 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
78997 TTTATCCCAA
79007 CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT
1 CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT CTAAAT
79055 CTAA
1 CTAA
79059 GTACAGAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CTAAAT
Left flanking sequence: Indices 78507 -- 79006
TCTTCTTAAGATAAGAAGAGTTGCTTTGATGAAAAGAGTGTAGCCATGATGGCAAGTCAAGGTGG
GGCCCTGTGAAGGCAAGCCTTGTGTATGTTGGCGTGATGACGAGAGAAAGGAAATGACCTTGAAC
AATAGCTGTCTGTAGCACACCCTGCAATGACTTCGACCAGCGGACCAGCCTATCCAATACCCTAC
GCCATGCTTGATGGCTTGGCCTGTGGCTTTGTTGACCAGTGCAAAGGCCCGACAACCGTTCTGAG
AGTCGCTGGAGAATGGCCAATAAGCTGGATTCCCTCCTTGCTTTACCTACTTTTTTTCCAGCGAC
TGCTACTGATTCCTTTATTTCCCACGTAACCTTTACTTCTATCTGGAGAAGATCCATTACCTAGC
TCTTATTCCGGCATGATCAAATCGATACCAACATTCAAGAGCGGATAAGGCTAAAAAGAGAAAAA
GCAGGGCTTAGGGGGAGGAATCCATTTATTATTTATTTATCCCAA
Right flanking sequence: Indices 79059 -- 79558
GTACAGAAATCTATCTATTATTGCCTGCATCGACAGCAAAGTAAACTCTCGCTGATGATAGAAGA
ACAACTCTTAGGGCAGTAGCAAGGAAACTATGAGCTATTTATTGTTCCTTTCTTAGACAGGCTAC
AAGATAAAGGATGGCTTATGGTCTATTTTCTTACTTGACTATCTTGCCAGGAGCTCGCAACAAAA
CGAGAGCTTTTTGATAGCCCGTTCACTCGACTACCACGCTTAGTTAGTCTGTCCGCAGGGATGGG
AGTGGCGTAGTCTGTCTGCCCTTCTTCGTAAGTAGCTGGACTTGGATCTTCGTAAGCAACTGGAA
CTATCAAAAGTCAATGTCAATTGGCCTTAAAAAGGCTATAGCCCTGTTTCTTTTGAAAAAACGAA
TTTCGAGTTTCGAAGAAGACAGGCCTCCAAGAAACTCCGCCTAAAGAGTCCTATTCCTATCCGGT
CTACATTCACTATTCTTCATAGGCACTGCGCTGGGTCGGTAGGTT
Found at i:88576 original size:6 final size:6
Alignment explanation
Indices: 88565--88653 Score: 178
Period size: 6 Copynumber: 14.8 Consensus size: 6
88555 TTTCCTCTTC
88565 TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA
1 TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA
88613 TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA TACTT
1 TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA TACTT
88654 TGACTTTGAC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 83 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.51
Consensus pattern (6 bp):
TACTTA
Left flanking sequence: Indices 88065 -- 88564
AAAGAACGTTCAAGATAGCTGACTGACTGAGCTACTTCCGTAATAGGGGTCCTTTCTTTTCAAAT
CCGACCCACCCCCATCGATTTCAAAATATGCATTGAGAAAGGTAAATACCCTATCCCCTGTCTGA
ACTCTTGGAAGAACTTAGACTTGGGCACTTGTAACATGGTTGGAGGCATAGACTTGGAGTCCAAA
CGCCATTCCCTAAAACCTTATGAGTAGCTTACTATCCTGCCTGGGTACTTCGCAAGTCCTGCTGC
TATCCAATTAGGCTGGCTTCATTACGTAGAGCGGATCCACCCATACATAATAGGAGTACTCTTAA
AGTAAGACCTTTAGAGCCTATAGTATAGCTTAGTAGCGGCGAACTTCTTTGAAATGAAAAACGAT
GTGCCTGCGACCTTTTGTTTCCAAGCTAGCTAAAGCCAGTTTTCGATGATCCCATTCGATTTGCT
TTTTTTCATGAGTATAGTGAGGCGTTAATTCAATCTTTCCTCTTC
Right flanking sequence: Indices 88654 -- 89153
TGACTTTGACTTTACATTAGAGACCTAATTCAAGGCGCCGCATCTCAGCCCTTCTCAATAGAATC
CATGTGCCATTGCCTGAATGTCAATCAGCCCCTCCTGTCCGAAAAGAAGCATATCCGAATAAAGC
AAGGTAACCCACAAAGCATTTTTAGCTATTAAGGACTGACTTCAAAAGGCTCAAAAAAACTGGAA
TCAGTTGGAGGAAACTAAGGGCCAGGTTCACATTATCAGTGAGCGCGGATAAGAACGTTTCCTGG
AATTCCACATCCCATATTGACTCTACCATCCCGGCACGTTGGCCACTAAGTCCAATCTGACCTAT
CTCAAATAAGATCTTTTAGGATCAATTTTATAGGCATCCCTCGCACTTTGTTTCGCTAGCAGCAG
CCCGGACTCGTATGCCAGTGCTCGCTATCCAGCCAGTCTAAAGAGTTCGCCTAGAAAGAACTTCT
CACTTCCAGGCTTAGCGGCTGACCTATGAACCACTTCTACTGGTG
Found at i:104351 original size:6 final size:6
Alignment explanation
Indices: 104340--104591 Score: 450
Period size: 6 Copynumber: 42.0 Consensus size: 6
104330 GCTAATCTTC
104340 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
1 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
**
104388 TACTAA TACTAA TACTAA TACTAA TACTAA TACTCT TACTAA TACTAA
1 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
104436 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
1 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
**
104484 TACTAA TACTAA TACTCT TACTAA TACTAA TACTAA TACTAA TACTAA
1 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
**
104532 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTCT
1 TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA TACTAA
104580 TACTAA TACTAA
1 TACTAA TACTAA
104592 GGAATGCAGT
Statistics
Matches: 234, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 234 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.35
Consensus pattern (6 bp):
TACTAA
Left flanking sequence: Indices 103840 -- 104339
TGCTTCTGCCCGTAGTTGTAGCTGTAATGCTCTAATACCTAAGTAGCAAGCCTCTTCTTATAGCT
CTTATTATTTATACACCATCTATGGTTCTATGCTGCATATGCGGGTTTGCTAAAACCATTTTTTT
AGCAGGAAATAGCCAAATTCCATTCTTAATACAAGGCCGCAGGTCAAGGATAAGGGAATCTGATT
TATGATACATGCCTGGAGCTATTGTGATACAACCCAGATTACTTTTCTTTATTTACTGATGAGTG
TTCATCAATGGAGAGAGATCCTACTCAAACCCTACTCAGTACAGGTTTAGGGATGCAAACTTTTT
CACACTCAAACACAGACCACGACTTCTTGAAAATGAGCTTAGGCAACTTCTCACCTAGTTGACTA
GTCACATCTTTATCCGCTGGCTTCCCTCTCTCCATTCCTCCTTCGGCTTTGAAGTAGACATTGAA
AGCGTATATGATACTTTCTAACTAGAATGACTCCAGCTAATCTTC
Right flanking sequence: Indices 104592 -- 105091
GGAATGCAGTCATTCAAAATAAGAGACCCCCCCAAGTTAGATGACCCAGGCAGTTTCTGTATTCC
ATGCTTGATAGGATCTAAAAGTTTCCGTGCTTTATGTGATCTTGGCTCTAGTGTGAGTGTGATTC
CCCTCTCTGTCTGCGAGGCACTACCTTTGGGTGATGTACGGCCGACTACCATGACTCTCCAGCTT
GCTGATCGCACTTATCGCCATCAGGCAGGCATTTTGGTTGATGTCCCTGTGATAGTTGGTAACTT
CGCATTTCCAGTGGATTTTGTTGTCTTGGAGATGGAGGATAAGAGCGAGCCTATTATTTTGGGGA
GACCCTTTCTAGCTACTGCAGGGGCTGTCATCGATGTGAAAGATGCTAAGCTCACGCTTCAATTT
GGTGAGGAGAAAGTATCATTTGACATGAGGCATCCAACTCACCTTCCTCACTGTCCAGACCTGTG
TTTCACCATTGATGTGATTGATGAGTGTGTTACTGAGACATATTT
Found at i:113281 original size:6 final size:6
Alignment explanation
Indices: 113270--113472 Score: 406
Period size: 6 Copynumber: 33.8 Consensus size: 6
113260 CTAGTACTTT
113270 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
113318 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
113366 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
113414 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
113462 ATAAAA ATAAA
1 ATAAAA ATAAA
113473 GTGGTTTAGT
Statistics
Matches: 197, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 197 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Left flanking sequence: Indices 112770 -- 113269
ATCTTGGTACCACAGTTTCATGCAACTTGCCACCTGGTACAGATGATAATATGCTTGCAGAGAAT
TTTTGTACCATAGGGCTGCTGACACGGTAAGTCAAGTAGGCAAGGGAGATTTTGGCAGGTAAGCT
TATATTAGTTCCGAGCACGAGATAGAAAGAAAAGATAGGCCGCGGGTTCGAAAGAAAAAAGTGAA
AGACAAATAAAGAACATTGAATTGCTGAAGTCTCTTCCATTCCATAGATAGCCGGCCCTTCAATA
CTCATCACTCTTTACCTATCAATGCCTACAAAACGACTTTCTTTTGCTTGGTGTCCCAGCCACAC
CAGATTATTTTACTTCTCTTTAGTGCTACGCCCTCACTCAATGTGAGAATACTTGCCGAGACTAG
ATCCTGGCGGCGTATCAAATCAAAGACATCATCATGCCATGGGTCCTTTCTTTGCAAAACTTGCT
TGAAATAAAGCATTCCATACTTATCTCTTGGTTCGCTAGTACTTT
Right flanking sequence: Indices 113473 -- 113972
GTGGTTTAGTTAGCATGCCGCTATTTTGCTTTTTCACTGCCGTGCCGCTACGCGCCTTCGGCCTT
GCTCCATTCCTACTCCTCCCTTGCATGCATGCTTCTTGGAATCCTACTCCTGCTTTTACACTGAA
AAAGAAGAAAGTTCCCGGCCGGGCTTTTGACTAGAAATAGACCTATCACACTTCGGTCCGGTACT
CCTTCTACCCTTTATACCCTGACTGACCTCTTACTAGTCAAAGAAGCTTTTTCTTCTTTTTTTAG
AGCTGTCTTAATTGATTCAAAAATGCCAATACAAAAACCCTATTGCTAATATATACATACTCAAA
GCTGCCCAGATAGGAGAAAAAAGATGCTTCAGAAATAGGCTGAGAAAAGAGATAGGCCCGCCGCC
CCATGGAATTGCTTATTCCTAACTAAGTTTTTCCTTCACAAGGTGGAAAAGAAGGAGCATGGCAG
TAATTGTCAAGGCTCTTTCCTACGTGGAAGCCTACATCTTTGCTT
Found at i:113282 original size:1 final size:1
Alignment explanation
Indices: 113272--113468 Score: 106
Period size: 1 Copynumber: 197.0 Consensus size: 1
113262 AGTACTTTAT
* * * * * * * * * *
113272 AAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * * *
113337 TAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * * * * *
113402 ATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
113467 AA
1 AA
113469 TAAAGTGGTT
Statistics
Matches: 132, Mismatches: 64, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
1 132 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (1 bp):
A
Left flanking sequence: Indices 112772 -- 113271
CTTGGTACCACAGTTTCATGCAACTTGCCACCTGGTACAGATGATAATATGCTTGCAGAGAATTT
TTGTACCATAGGGCTGCTGACACGGTAAGTCAAGTAGGCAAGGGAGATTTTGGCAGGTAAGCTTA
TATTAGTTCCGAGCACGAGATAGAAAGAAAAGATAGGCCGCGGGTTCGAAAGAAAAAAGTGAAAG
ACAAATAAAGAACATTGAATTGCTGAAGTCTCTTCCATTCCATAGATAGCCGGCCCTTCAATACT
CATCACTCTTTACCTATCAATGCCTACAAAACGACTTTCTTTTGCTTGGTGTCCCAGCCACACCA
GATTATTTTACTTCTCTTTAGTGCTACGCCCTCACTCAATGTGAGAATACTTGCCGAGACTAGAT
CCTGGCGGCGTATCAAATCAAAGACATCATCATGCCATGGGTCCTTTCTTTGCAAAACTTGCTTG
AAATAAAGCATTCCATACTTATCTCTTGGTTCGCTAGTACTTTAT
Right flanking sequence: Indices 113469 -- 113968
TAAAGTGGTTTAGTTAGCATGCCGCTATTTTGCTTTTTCACTGCCGTGCCGCTACGCGCCTTCGG
CCTTGCTCCATTCCTACTCCTCCCTTGCATGCATGCTTCTTGGAATCCTACTCCTGCTTTTACAC
TGAAAAAGAAGAAAGTTCCCGGCCGGGCTTTTGACTAGAAATAGACCTATCACACTTCGGTCCGG
TACTCCTTCTACCCTTTATACCCTGACTGACCTCTTACTAGTCAAAGAAGCTTTTTCTTCTTTTT
TTAGAGCTGTCTTAATTGATTCAAAAATGCCAATACAAAAACCCTATTGCTAATATATACATACT
CAAAGCTGCCCAGATAGGAGAAAAAAGATGCTTCAGAAATAGGCTGAGAAAAGAGATAGGCCCGC
CGCCCCATGGAATTGCTTATTCCTAACTAAGTTTTTCCTTCACAAGGTGGAAAAGAAGGAGCATG
GCAGTAATTGTCAAGGCTCTTTCCTACGTGGAAGCCTACATCTTT
Found at i:130120 original size:11 final size:12
Alignment explanation
Indices: 130092--130124 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
130082 CAGTCACGCG
130092 AATAACGAAACAA
1 AATAACG-AACAA
130105 AATAACGAAC-A
1 AATAACGAACAA
130116 AATAACGAA
1 AATAACGAA
130125 TGCGCACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
12 3 0.15
13 7 0.35
ACGTcount: A:0.67, C:0.15, G:0.09, T:0.09
Consensus pattern (12 bp):
AATAACGAACAA
Left flanking sequence: Indices 129592 -- 130091
CCCCCTTTGGCATCAATGAAACTCTGTGATATAGGAGTTCAAAAACCTCATTTCGTTTGAGAGAT
AGTGGAATTTCTTCTTTCAACACGTACATCGACGAGGGTGTCGATGACTTGAGTGAGGAATGGTC
ATGTGCTAGAGGCCGTACCGTTGGAGTAAGACCTCAACAAGGGGGTGTGCAGTTTAAATGTAAAT
GACGAGCATGGAGAGGCCAAGGTCATTTGTAATTAGGTGTGGCTGATGCAAGAAGACTGGCGAGC
TGTCCATGGTGAGACTCGTTGTGATGCTACTGCAGGAGGCATCCTGGTGTAGTTGAGGGCGCAGA
ACTTCTGTGCGGGTACAACTGGCACTTAAAAGACCTTCCGTGTAGATGAGTTCTCTTGAGTGAGA
CTAATCGAGTTACGAAGAAACCTTTGCGATGGTGCTGTGCAGTTGGGTTCTCTATGGAGGAACTT
CGTTGTGGGGACCAAGGCAAATAAGGATACCCGGTCAGTCACGCG
Right flanking sequence: Indices 130125 -- 130624
TGCGCACAAACCACTTTTACTGATTCAAATAAGTATATAGCGCTTCCTTAATTAAGTAACCTTCC
ACTTATAACGAACGGGTAGGGGCAGGGGACCTACCTACCTACCTACTTACAGATGATGAATGGAT
TCATCAAGTTATGGATGCATTTCTCCCATCCTCTTTCGGTATCTAAAAGCTACCGTCGGAGAGGG
GATTGCCTTAGCTACCGGTACCGAACTCCGATCAAACTAAAACGAAAAGCTTAACCGATTCTTGT
AGAGTCCTTAGCATTAGATAATGCATGCGCACACAAGAGGAATGAACTTGCCTTCTAGTGATTTG
GAAGGATTGAGTCGGCTGCCCCCAGCCTCGCCCCGCATCGCCCTCCGGGGGTAGTTACGCCAGTG
GAACCAACTCACAAAGCAGCCCAAAAGCAGGAACTTTTCTTGATTGAATTGGTTTCGGGATTCCC
TTGGAGAGGGGAAAGCATAAAAGGAAACCACTAACAAATGACAAA
Found at i:131621 original size:5 final size:5
Alignment explanation
Indices: 131611--131679 Score: 138
Period size: 5 Copynumber: 13.8 Consensus size: 5
131601 ATCTGTCGTA
131611 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
1 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
131661 TATAC TATAC TATAC TATA
1 TATAC TATAC TATAC TATA
131680 ATAGACGAAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 64 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAC
Left flanking sequence: Indices 131111 -- 131610
TGATAGGAAATATGCCAAGAAGAATTCCATTTCATCTCTTGTGTGATCAAACGGGTTGCCCAATG
TACCAAATGCTTTCTATAAAGTGTGGAAATAGTCAATGTAGGAAATGCTGGGACTCTGACCTAAA
ACATATGTGCTGGGTTCCCGCCGACCAAAAACTTATGCCCAGTGCCAGACCAGAAAATCAAGGAA
ATATAGGAATGTGGAAATAGGAATGTAAGAAAAGCCATCAAGCTAGGAACACAGAAAGCTACCAC
TTCTTGTAAACAAACCTATGCTATGAAACAATCAAAGTAGATCGGATCGTATGAGGGATGCCTAC
AGGGCAAGGATATCATGATTTGAACAAGCAGGGGAAAGTCAAGAAGCAAGGTCACTAATCTAGAT
CCGGCCTGGCCGAAGGATAAGAAATGGATGGCTATCGCTTTCCTTCTTAGGTGAGGGATTCGAGA
TGTATGCGCCCGCATAAAGATCTGAGAAGCTATGAATCTGTCGTA
Right flanking sequence: Indices 131680 -- 132179
ATAGACGAACAAACACATAAAGAGAAACCGGAGACTAATGACCTAGATCATCAAACCTTTCTGTC
CACACTCGATCCTTAGCAATAAGCCTACAGCTAAGAAGATGGAATGGTACCAAGCTCACTTATAC
GCACTCCTAAATGAAACTAGACTATCACACTAAGTTACACCTGCCCTGAGCCATAAATCAATAGA
AGAGTTCGGTATTATTTCCATCTTTTCCATTAGTTTCTATGAAATCCTGATATTCGTTTTTCTAT
TCCACTGCGCATAGCCCGGTTCTTTCCGCTAGCACTGGCAATAGACCCTTAACCGGCACTGGCAC
TGAGTGCATTACTTACTGAATTACTTACTTTACTGCATTTCCAGCTGGCCTTCCCGAGTACGAGT
ATGGGTTCGTTGGATCATTCTATTCTATGTCAATGTCAATTGGAAGTTGCATTTCAGACTCTGGA
AGCCCCGTTCCTTCTCCTTTTAAGGTCGGCAGGCCATAAATCCAT
Found at i:135133 original size:19 final size:19
Alignment explanation
Indices: 135087--135133 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
135077 ATACACGGCG
*
135087 ACTCTCAATCTGATAGCTA
1 ACTCTCATTCTGATAGCTA
135106 ACT-TGCATTCTGATAAGCT-
1 ACTCT-CATTCTGAT-AGCTA
135125 ACTCTCATT
1 ACTCTCATT
135134 GTTCCTTGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 1 0.04
19 18 0.75
20 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.36
Consensus pattern (19 bp):
ACTCTCATTCTGATAGCTA
Left flanking sequence: Indices 134587 -- 135086
TGGGCTCGTAGCAGGCTGTCTTAGGGAGTTTGACAAGATCCCAAGTTTTATTCTTTTCAAGTGCT
CTTAGCTCCTCCAACATGGCCTCTTGCGGCTCCTACGAGCTTACTATCAAACTTATATCCTGCTT
TTCATCTGTAGAAGCAAGGGCAGAACTCGAAGCGACAACTGCAATAGTAAGTTTCACTTCAGACA
CGAGAACTCAATACACTATCGAAACTAACACTGCTGGGTAATACATAAGAAACTACTGCTCGGCT
ACTTCCTAATACCATCGAAATGGCATCACGGCAAGCAGCTCTTATTTCCTACTTTCAAACCTCTA
GTTGGCCTGGTAAAACCCTAGAGACTAAAGCCCAGCCTTGTATTCTTATTACCACACTGAAAACT
AATAGCTGTTGTAGAAAGGTATAGAAACGGGACAGCCTGATTGAAACTCTTATTTCAGGTTTGAA
TCCTTACTTGAACTGCCTAATAGACAAGAAACGACATACACGGCG
Right flanking sequence: Indices 135134 -- 135633
GTTCCTTGACCTGGTAAAACTGTATATACGACAGATCAAATACGAAGATTGAGCTCAAACTCTAG
ATACCACAGATCGACTTTCCAATCTGATATCTTCATATCTCCTTTTGCCTGTTCAAACTTATAGC
TTACTTCCTTTCTTATCACCTCCTTGGTAAAACACTAGAAAGAGCTTATCAACTAAGATAATATC
AAGAAAGCAAGCCTACAAATCCTACTGATACGGCATCACTACTTTTCTTCTTGTCTTACAATAGT
ATGGATACGAGAAGGGCCCGCCTAATAGGAGAAGTAAAGCAAGAAACCTGATATGACTCGCCTGC
TTACTACTATGGAAAGGAAACGAGCCAGCCTAAAGCACGGTAAACTACTTGCTTGTTTGGAATCT
GCACTACTTTGGGTACGAGAAAGCAAACAATCCGATTGAAACTACTAGCTTCGATTCTTATACCA
TACTTGAAAGCTTCGAACAACAAATCAATCTTCTAAACCGGAATA
Found at i:138625 original size:5 final size:5
Alignment explanation
Indices: 138615--138649 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
138605 GAAAAGGAAA
138615 TCCAT TCCAT TCCAT TCCAT TCCAT TCCAT TCCAT
1 TCCAT TCCAT TCCAT TCCAT TCCAT TCCAT TCCAT
138650 AGTGAAGCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (5 bp):
TCCAT
Left flanking sequence: Indices 138115 -- 138614
GACTTGCATTGCACAACCAGAAATCTTCTAACCAGAACAATATAGTCCACCAATACTTGAATCTT
GACCAAGAAACCTTTTTTACACCGTTGCAAGAAAATAACGTAAAGAAAGTTCATAGGGAGTCCGG
GATCCGTCCAAGGCAGACTCTATTTTTCGAGGGATCTAGGGCCAACTCTTTGGTTTACTTGACCG
ACTCTTTACGGCAAGTTGACTACCACTTTCTTTAGTGGAAAATCGACAGACAAACATGGATAACT
CTGGCTCAGGCCAACCTCAATCCAGCTTTCCTGGCACTATCCCTTGCTGTAATACGATGAAACCT
TCACAAGCGATAGATAAAGAAAGCAAGGAAGCTCAAAACAACCAGCACAAGAATGCTTCCTACAC
TTCCAATTCGATGACAGTCTAGTCCTGGAAGAAGGCATCTCATCGATTCGCAGCACTTTCAAAGG
TTTGCTGGTCCCTGCATAGGCTTGACATATAGCACGAAAAGGAAA
Right flanking sequence: Indices 138650 -- 139149
AGTGAAGCCATATCTTCCGTGTGCGTTCTAGTATGGGTGACTCTTAGGAAAAGGAACAAGTGAAA
GAAGCCCGCTAACCCACTCTTCTTTCCCCCGCGCCTACCAGACATGACGATAAGCGGGGGCCTCG
GCTTCCTATAAGAAACCTACACCAGTGAATTTCTCGATCCCGCTCCCAATCGCAGATTTGAACAA
TCAAGTCGATATGGGGCTTGTTCTTATAGTTATTAAAAAAATAAAGGCGTCGCCTTGATAGGACC
AGGGCGATTTTTACCCTCTTTTCGTCGCTCGCCGTTTCGAGGTTAAGATCAGAGTAAGTTTGGCT
TAAAAGGTTCTTCGTGGGGGCCCGCAGTCGACAGGATTGAAAAACTTCTTTTATTTGGTTTTTTA
TGTCAGAAATGGATGGTGGTACTCCTGCCGGCTCCTCGTTAACCACTTCGAGGATCATGCCGTGA
TCAGTTGGGGCGGGTTGGACAGGAGCTGGTGGGGCCGCAAAAAGC
Found at i:144487 original size:39 final size:39
Alignment explanation
Indices: 144438--144517 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
144428 ATATCTATTG
144438 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
1 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
144477 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
1 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
144516 GT
1 GT
144518 CTTTATGAGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (39 bp):
GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
Left flanking sequence: Indices 143938 -- 144437
GTGCTTGCTTATTAGATTAGCTATTCCTATCCACGCTAAAGAAACAGGAATCAGGAAGTTGTTTC
TTTCATTTATACCTATGATATCCACGCTAAAGATGAGGGCCTTCTTTTCCAGTTCATATCAGCTA
TCCCATCTCTTTCTTGCTCGGTGAAAGGAATATCACTATCCCATATATATATCTATTTCAAGAAA
TATCACTATCCCATCTCTTCTATTAGTTCTAGTTACTGACCCTCGAATACTGTGCTTTCTTAGCT
AGCTATTATGCATAAACCAGTGCTGCTAAAACAGCTACTCCTTACTTCTATTGGACAAATCTGCC
CTAAGCCTAGTTACCTTTAGATTCCACACCATTCTGAGATATAGCTGCCATAACCCGACTACTCT
TTACTTACCTACCTTGCATCTCTAACCCGTCCCACTCCCTGCCATCCAGGGATTCCAAGGGTCAT
AGCGTACTCTCAATTCAAAACGAGATACCCTTTCTATATCTATTG
Right flanking sequence: Indices 144518 -- 145017
CTTTATGAGCTGGCAAGGACTTTAGAATCTATAAAAGCAGAATTTTCAAATAAACGCGCGTTCAG
TTCCAGTTGTCATGGATAAACATAGATTTCTTCTTTTCAGGAGTTGTGCTGGTTTTGGAAAGCGA
GCTTACCTTGTTTGTCAAGGATTGCTTGTGAAATTCTCCGGCTGGTCGAGACCTGTACCTTGGTC
AGAGTGATACCAGTGCCGTGCTAGCTAGTACATATTGGTCCCAGACCACAAAACCCGGCATGGTA
ACAAGGCATTTCCTTTTTTCACGTCGAAATAAACCACTGAGAACCTGGGCTGACCAAGAAAAAGA
AATGGTAACAGGCCTCAACACTAAAGGAGGACCAGTCAATACATGACTAAGCCCCAGTGACGAGT
TCACCACCAAGCGGTAATTTCTAAAACAATAGAGCGATAGATGAGCACACGTCAAAGAAGAATGA
AGGGGGACATACATACCTAAATAAAAAAGGAAGTTCCAATGGAAC
Found at i:148444 original size:5 final size:5
Alignment explanation
Indices: 148434--148493 Score: 113
Period size: 5 Copynumber: 12.2 Consensus size: 5
148424 TCTAGGAACC
148434 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
148484 TATAG -ATAG T
1 TATAG TATAG T
148494 TTCTTTTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.07
5 50 0.93
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 147934 -- 148433
GGAACCATTCTTTTCCCGGTTCCCATTAGAATAGCATTCCTTCCATTCTGCCAACCAACCATATC
TCTTATCCGCTCTTTTAGAACCAATTTCCATCTTTCCACTGACAGCTGCGAAGAGCTCCCCTTCA
CTAGGGCCAACATCCCAGAGGCTATGCTATTTGTTCAACTCTCTCGCGCGGGGCGAATAAAGCTT
TTTCAAAAAGAAAAGAATAGACAAATCAAAAATAAAACTAGCTATGGGCATTAGGTATAATAGAA
AGGAAGCTTGGAATGTTCAATCAAAGAAATGAAAACAAATACTTAGGCTTAGGCAGAAGCAGACT
GCCGATTCTAACCTTTCTTTATTAGGAGGCTCGGGAAAACTGGGCTTTCTGATAACTAATCACTG
GAAGCACCCGATTCTCTCTACTCTGCACTTGGCCGGGATACCGAACTTAGGTGGGAACTTTTGCT
ATTGTTCAGTGAAGATTTTCTATTTATTTGATGAGTCTAGGAACC
Right flanking sequence: Indices 148494 -- 148993
TTCTTTTTTTAGTGAAAAGTCCGTGTCATTCTTTCTTTTTCTTACTAGGTTGTTTATCGAATCAG
AGTCTTTCTCTTTGTAAGCTACTGGTTCAGATCATGATAGGAAGGGCGGCCTTTGTCTTGTTCAT
TTAGTGAATACTCAATAGCTGCCCGCTTTTGGTACTTAGCCCTAGCTTAGGAAATTGCCCCGGCT
TTCGATGCCGACTATTTCAGAAACAGAAGCGGATGGATGGTGCTCTTTCGTAACTGACGACCTGC
CTCCTCCTTCCTTGCCCGCCTCAGCGGAAATCTTCCTTATCTTAGAAAGAGTAAAGAAAAAGGCA
CCTAATCAACTGAAGCAGATGCAGGATCCCTCGAAAAAAGTGAAGTGAACTAGCCAGGTAGAACA
GTAAGGTTAGGAAAAGACTCTTTCATGTCAAGGTGAACATAGACAGACAAGGTTAGTTTGTTTTC
CTTCATTCTAAGAGAGAAGACTCGTTGCTGGAACCGAGAGCACTA
Found at i:157403 original size:5 final size:5
Alignment explanation
Indices: 157393--157419 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
157383 CTTTCTACTT
157393 ATGAG ATGAG ATGAG ATGAG ATGAG AT
1 ATGAG ATGAG ATGAG ATGAG ATGAG AT
157420 TTGCACTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.37, T:0.22
Consensus pattern (5 bp):
ATGAG
Left flanking sequence: Indices 156893 -- 157392
AAAAAAAAACGCTGAGAGACACATTGCAAAAAGAATCGCTTATTTCAATGTTGTAAACTAGTGAG
TGGTACAGGAGTTATGTGGTCAGTAACCCTCATCCTAATAGGGACACCTTGATTAGTGAGGTCAA
GAATAGGTTTCTGTGCATCCAAATCTGTAACCCAGTTGATGAATTAAGAAAATGACATCAGGTTG
GATCTGTAAGGGAGTATATGAGCAAGTTTGAAAAAGTAAAGGCCGGACTGGACTGATCTTGGAAA
ACCCTAATCTTACTGAGAAGTTTTTCTTTTCCTCTTTTCTAAGTGGTTTAAAGGAGGAAGTGAAG
TATATGGTCACTGCTCAACACCCTAATAGTGTGAACAAGGCTTATGAACATGCTATGCACTATGA
GTTAGCACTTGAGTCAGCCAGTAAGAAATCTAGAGTGGTACCTATACCTAGGTGCAGAATTCCGA
AAGAGAGAGCGCGGCTCACTTCAAACTACCGCTTTCTTTCTACTT
Right flanking sequence: Indices 157420 -- 157919
TTGCACTAGAAAGACAGAAGTGGAAAGAGACAGAGAGGAGACTAGTAAAGCCAATTTCACCTAAA
AAGCGGAAAATGACACTAACTTCTACTGTGGGCAAGTCATCATTTCCAGAATGGATTCAGTCGTA
GAATGCTGAAGTAGAGCAGTACCAAGGTTCGGTTTTGGGACAGACAGAAAGTTGGATAAGAGGAT
CGTTCTTAGCCCCAGCTACGAGAGAATAATATGCATCTTCCGTCATTTCATTAGACGTTCTTGTT
GGATTTGAACGCGCATCGGATTACTTACCTTCTACAACCTTCTCTCTTTGAATTCATCTCTCAAA
ATAGAAAAGCTTCTTTCTTCTGGATTCAGTGTTCAGATTAGCTTCCTTCTGAAAGCAAGTATACC
GAGCATTCATTCGATGACATCTAGGTCCTAAATCCAAAACCTTAAACACTAGATCACCGGCATAC
CTAGCGTAAAAGAAGAGTTGCTGCCCATTTGCATGTTCCATTGCT
Found at i:164213 original size:6 final size:6
Alignment explanation
Indices: 164204--164269 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
164194 GTTCTTCTTC
164204 TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA
1 TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA
164252 TTAAGA TTAAGA TTAAGA
1 TTAAGA TTAAGA TTAAGA
164270 AGCAAATAGC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (6 bp):
TTAAGA
Left flanking sequence: Indices 163704 -- 164203
ACGACAGCTTCCCCCTCATTGCCATCGTCGGCCTTCCCCAGCTCCCCTCCTTCGTCGCTTCTGGC
TAAGCATCTTTCGGCGGAGGAAAGGAGGCGACTAGTCGCTTCTGGCGAAGCTGCGAGTTCATGAG
CAAGTGAATGAACGAGCTGCGAGTGAAGTGCAACAGTCGTAAGTAAGGCTCGCCATGTTCCTAAA
AGGAGTGACCATCTTTTCTTCCCTTCTACTGACACTGAGCGAGCAGCAAGCATAGGCAATAGTTT
CCGTAGGGGTGGGGCGCAAGCAAGCGTTTTCAGGCTCCGCTAGCTAGCGTACTCTTCTGCTATCA
ATGAAACCGAAAGAAAAAACCTGTGCCCTTTCGTATAGATCGAGACGCAGTACTTTTTCTTGACT
TCTTCCATACTAGGAAGAATGGAAGGAAATCCTTCGATAACACTTCTTCTTCCTTATTTGAAGAA
ATGATATCCGACGCCCGCTCTTTCATTTCAAAAAAGTTCTTCTTC
Right flanking sequence: Indices 164270 -- 164769
AGCAAATAGCATTTCCTATTGATTTGTCCCCTGGACTAGACCTATGTAGATTCGGAATTATCCGT
CGCTACGCTGTTCCCAAGGACTAGCAAAATCAAAATAGCGAAATTCTTGGGTCATCTCAATGGGT
TCAGAAACCACACGTTTCTCTGGATCATCATAGCGTACTTCCACATATCCACTCAGAGGAAAGTC
TTTTCGTAATGGATGACCCTCGAAACCATAATCAGTTGATATACGGCGTAAATCCGGATGATTGA
TGGAAGAAACACCAGACATATCCCATACTTCTCGCTCCCACCGGCCGGCTGATGGAAATGGACTG
ACTACCGGAGATATTCGTGTTACTTCGTCCGCACTTGTTTGTACACGAATGCGTGAGTTATACCG
AGTACTCAGTAAATTATGGACAACTTCAAATCTTCGTTTTCGAGAGGGATGATCCACTCCGCAAA
TATCGATCGAAACTTGAACCCTTGTATAGGTATGCCATTTTAGAA
Found at i:165449 original size:5 final size:5
Alignment explanation
Indices: 165439--165475 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
165429 TTATGGCCCC
165439 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TT
1 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TT
165476 AGTTTCAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (5 bp):
TTCTA
Left flanking sequence: Indices 164939 -- 165438
TGCTCTAAGCAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCGACCAAGAAAGGCATGGG
AGTGGAGAGGCGGAAGTGAAAGACTGGCTACCAATAAAGATCCCTCACTGCACACTTTCTATAGT
TCTGTATCCAGGATCGGCTGCATGCTCTAGTGTTGAATCGGGTATAGAACCCAGGATGCTTGGTT
ACAATTCCGAATCCGCTAAACCATGTTTGTTTTCTTTTTTTTTCTCGACTGGCTTTGCTTGCTTT
ATCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAGAAATAGAAGCTTTTTCGTGCT
TGCTTGCGAATGGCCTGAATGGAATGAATATTAAGATAAATAAAAGAAAAAAAATAAACCATTGA
GAAAGTTATTCATTCTTATATTAATTTCCTATACTTGACCGAACAACTTCCAATTCCGTTATTTC
AACTACACCAAATGAATTGGTCAAGACTCTCCTGTTTATGGCCCC
Right flanking sequence: Indices 165476 -- 165975
AGTTTCAGATCGAGCGGGCGGGGTTCGAACCCGCGACTTCTGGCGTGACAGACCAGCACTCTACC
CAACTGAGCTAACTTGCAGTTTTTCCAGTCTTCGAGCAATGATGTGAGACATACCTGTTTCCCTT
ACTAGAGCCGAGCGGTTGCCAGGCCCGCGTCCTTCCCCAATTGGCAGGCACGATTGCAGTCCCAT
AAGGTCCTTGACCCCTACCTTTTCTGAGATTCATGGAATCATCACATCACTATATTAATTACGCA
TTTCTCGCTTCCACAAGGAAATGCAACGAAAAAATAGGACGATTACGGAACTTTTTCTGTCAATT
GCTAAAAACAGCAGTTCTAGAAGGGACATAGCCAACCGCATAAACTCTGGTTTGAATGCCCACAG
AGCTACAGGAGGGAGAACCATTCAACGAGAAATGACGATCAACATGGCATATCAGTAACCGTCGT
TGAATCAGTAAGCGGTTCTAGTGCTTGAGTACTAATGAGGGAAAG
Found at i:188749 original size:5 final size:5
Alignment explanation
Indices: 188739--188789 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
188729 ATCATTGGCC
*
188739 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT ATAGT
1 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT
188789 A
1 A
188790 CATCAGATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22
Consensus pattern (5 bp):
AAAGT
Left flanking sequence: Indices 188239 -- 188738
TAGAGGGACGGAAGCTAGCACTGTAGTCTATAGAAGGGGAGATCCTCTACGAGTTATTAAGCGCC
GAAACCATCACTAGCTGATAAATGAACTGAATCCGATAGAAACGGTTAGGAAGAGTCGGGTGGGT
GTTGAATTGGTAGTACTTTATTCTGTCTCCAATAAGACCTTAGCCAATGCAATTTAGCATGGTTA
AGAATGCAGGCCTATTGTTGCTCCTCAATATTATCATATAGAAAGAAACGTAGCGATTCCGTTGC
GTCTTAACCATTCAACTGATGCGGAGAATCGAGTCTATTCAGGAATCATTGCAGCAATTCTTCAA
TCCTAACGAAGTCATTCCGGAGGAATCCAATGAACAACAACGATTACTTAATCTACGGGTCAGCT
TGCGAATTTGCGGCACCGTATCTTATCTATTCTATAGTAGAATCATTACCAAACCAACAAGAAAG
GATAATGTTGCTCCTCAGAAAACGCGTATAATAGTATCATTGGCC
Right flanking sequence: Indices 188790 -- 189289
CATCAGATTGACCCCTACCAATCCTAGGTAGCCCCATCTCTTCTAATCTAAAGAATCCGCAGTCT
TGCGTAAATTCAAGTAGTGTAGTGGTAACAAAAGATTCATCAACCAATGAATTGCATTTCCATTC
TTCGAACCACCTTTCCTAGCTTGTGTGCGGGCAGCCTGTCGTAGTGCATGCACCAGCCTCCATCT
GTCATTTCCCATCCTGAGCAAGTCGATAATGAACTGAACATCCTGCTGTGCCCCAAAATTGCTTC
TATGTCGCGCACAGGCCATATATGGTTATCCCATAGACCTAGCTAGCTTCTTGCCTGCCTATGAG
CTGAAGTGCTGTCCTCAAGGCATATAGCCGTATATATGTATATGTTGGTATTTATCCTTGCTTGT
TTCAAAGCTTTTGCTTCCCACAATTTTACAGAAAGAGCAAAAGTCAGTCCTTACCTACTACATAT
ATGACACCAGCACACATCTACCAGAAAATAAAGGTGGGAATTCCC
Found at i:198222 original size:5 final size:5
Alignment explanation
Indices: 198212--198237 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
198202 TTCAGTCTGT
198212 ATCAA ATCAA ATCAA ATCAA ATCAA A
1 ATCAA ATCAA ATCAA ATCAA ATCAA A
198238 AGTAGTGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
ATCAA
Left flanking sequence: Indices 197712 -- 198211
CTTGAGTTGACCCTCCTATCAAATTGTCTTGAAAAGCGCCTAGCCTAAGCTTGTGTAGAGCCAGA
AAGACGAGAAGGGAGAAAACAATAATAAAGGACAGGAGTGAAGCTACCCGTCGCTTCTTGCATGC
GCGTGCGTGTCTTTCTTTTTGTGTAGAGCCAGATCAAGCTGATATGAATGTTCGAACGAGTAACA
CGAGCTATAGACTACTTAAGTGTTTTTACAGAAAGCGAGTGAATAGTAAGTGTATTCCCGAGAAG
TTCGATAAGTCAAAGTTCACTCTAAAGTGATTGATTTCTTTCGTACTGAATTTCCCATTGCTTTC
ATACGCGAAAGAAAGAGTCGATTATCGATTTGCTAGGCCTAAGGGTGCTTCGAACAAAGGAAATC
CGAAGAAGGTTTTCTTCAATCAATTATGAAGGAAAGTGAGTGATGGCATGAGACACCATGTTCAG
AGCTTCTTCGTTTTTGAATTTGAGCATGCATTTCTTTCAGTCTGT
Right flanking sequence: Indices 198238 -- 198737
AGTAGTGCAGATTCACTTTGAGACGGAATAGTCTCGGTAAAGGAAAGAGGCTATTGCTGAGCATC
TCTATATTGATCTTCGCTTTTACGGACAACCTTTCTTTCTGTAGGTTTAGCCACCGTGTATGGAT
CCCGGAACTTTGAAATGTAGCAGCGGTGTTATGATATAGATTGCCCATGCAGTTTCGTTTGAGCT
GCCGCAAGCAAGTAATTTTGGACGATAGGTTAGGACTTCTCTTATCAAGTTGATTTTGAAGTTTG
GACTTCTGTACGAGCTAAACCTGACTCGCTTTCAATCGTAATTTTTCTTATCAATAATCCAATTC
AGAATTTCGTTTTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCATTGGGAGCA
GTAGATCATTTCTTTGTTGGGAGCCAAGTAGCTCATTTCTGTTGGGATCTGCCGTGATAGAAAAT
CAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGC
Found at i:198647 original size:25 final size:25
Alignment explanation
Indices: 198619--198674 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
198609 TTAGGTGGCA
198619 TTGGGAG-C-AGTAGATCATTTCTTTG
1 TTGGGAGCCAAGTAGATCATTTC--TG
*
198644 TTGGGAGCCAAGTAGCTCATTTCTG
1 TTGGGAGCCAAGTAGATCATTTCTG
198669 TTGGGA
1 TTGGGA
198675 TCTGCCGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (25 bp):
TTGGGAGCCAAGTAGATCATTTCTG
Left flanking sequence: Indices 198119 -- 198618
AATCAATTATGAAGGAAAGTGAGTGATGGCATGAGACACCATGTTCAGAGCTTCTTCGTTTTTGA
ATTTGAGCATGCATTTCTTTCAGTCTGTATCAAATCAAATCAAATCAAATCAAAAGTAGTGCAGA
TTCACTTTGAGACGGAATAGTCTCGGTAAAGGAAAGAGGCTATTGCTGAGCATCTCTATATTGAT
CTTCGCTTTTACGGACAACCTTTCTTTCTGTAGGTTTAGCCACCGTGTATGGATCCCGGAACTTT
GAAATGTAGCAGCGGTGTTATGATATAGATTGCCCATGCAGTTTCGTTTGAGCTGCCGCAAGCAA
GTAATTTTGGACGATAGGTTAGGACTTCTCTTATCAAGTTGATTTTGAAGTTTGGACTTCTGTAC
GAGCTAAACCTGACTCGCTTTCAATCGTAATTTTTCTTATCAATAATCCAATTCAGAATTTCGTT
TTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCA
Right flanking sequence: Indices 198675 -- 199174
TCTGCCGTGATAGAAAATCAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGCTT
ACACAAGTGGTGGATTGGATGGCGGAAGAGAGAAGAGACCCGGTCCCGGTATGAAGCAAGCTAAG
GTTCTCATCTCCCGAAAGAATAGAATGAATGGAACTGTCTCTTCTCTAGCAAGCATCGAAGAAAG
TGTATTCATTCTCGGGTGTAGTGTAGATCGGGGAATAGCTCAGGCTCTGGTTTCAGGTCTTGCAT
GAGGGAAGGTGCCGGGATAAAGGTCGGTTGAAAAGCACGGCTATACTATACGAGTGATTTTTATC
AAGCTAGTGTGTTGGCCGGTTCGCAAGGATTGAGTTGAGTGAACTGGCTTTCCTATCGAATAGAA
GGAAGTGGTGCACGGCGCTTCGGAATGTGAAATAACGTATCAAATCTCCGGGGAAAAACAGTTGA
TGTGAATGAATGAATTGAAATATGCATGCTGCATGCCACCTCGGA
Found at i:200241 original size:5 final size:5
Alignment explanation
Indices: 200231--200341 Score: 222
Period size: 5 Copynumber: 22.2 Consensus size: 5
200221 CCAAATTCTC
200231 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
200281 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
200331 TACTA TACTA T
1 TACTA TACTA T
200342 GTCCGTGACC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 106 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 199731 -- 200230
CATAGATTGTCTCCTATCTCTCCCCTGTCCTCTCGAGCTAATGACTAAACCGACCCACGACGAGA
GGATCAACCACTGCCATAGAAAGAGCAGCGACTAACTAAAACCAAGGAATCCATCATCTGGCATA
TTGGCAATGGGCGAACTGTCCGAGTGTGGCGTGATCCGTGGATTCCCAGAGCCAGCACTCTAACC
AACTGAGCTATTTCCCCAACTTTCAATTGCTAAAAACAGCAGTTCTTTCATTTCGGTATATTTAT
ATATAGCTTTCGCCCTTTAGTTCAAACAAACTTCATCTCCTGCGTCGGCTGTTTCACCTCAAAAT
GGCCTAAAGTACCTCGCCGAGCACATAAGCGAGTTCAACCACATCGTGAACCAATTGAAGTCGGT
CGAGTACCCATTGGGCGATGAGTAGAAGGCACACTGCTTTTTTTTCCCTCTATGCCGGATAGTTG
GTCCACAACCTTACTTATATGTTTATGTGGCAACGCCAAATTCTC
Right flanking sequence: Indices 200342 -- 200841
GTCCGTGACCGCATCGTAAACGAAGAGATTCGTAGGAAGGAGCGAGGCAAGACCAAAAGCAAGGA
AAGTAGGAGTTACTTGAGGCATAAAAGCAAGAATGCCAGGATTTCCCATGAATTGCAGAGAAGTG
GACTGGGTCTGATCGTATGAAAGAAATTCCTCCTCGATCGGGACATCGTTGGTTTGGTTAAGTGG
CGGGGGGAAAAGCTAGTTATTTCTAAAAGCAAAGGATCCATAAAATGAACCAATCGAGCAACTAC
GGCAATGCTCGATGCTATTTCGGGGCCTATGAGTAAGCGAAATGAAAGGACAGGTCAAGTACAGG
AGGTTTTCTGTCGCATTTCTTTCTATAGCATTGCTATATTGCTTTATGCACTTGTCGGCCTACTC
AGCGAATGTATGGATTCGGCCGGGAATAAGTACCTATCCCTTACGGGAATCGAACCCGTGTCTTC
GACATGAAAAGACGATGTCCTAACCACTGGACGAAAGGGACCAAA
Found at i:205243 original size:5 final size:5
Alignment explanation
Indices: 205236--205424 Score: 351
Period size: 5 Copynumber: 37.8 Consensus size: 5
205226 CGCGTATGTT
*
205236 AAGTT AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
205286 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
205336 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
* *
205386 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTT AAGTT AAGT
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGT
205425 CGGTCAATCG
Statistics
Matches: 182, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 182 1.00
ACGTcount: A:0.58, C:0.00, G:0.20, T:0.22
Consensus pattern (5 bp):
AAGTA
Left flanking sequence: Indices 204736 -- 205235
AAGTCACTAAATCCCTATCTCCCGGTGGTCGAGTACCCCCGACGCGTCGAATGGGTTGTTTAGTC
TGACTTCTTGTGCTGGCCCGACATCATTCTGTCTCCCGCATTCTCTCCTTTCATCGGTTTGTTTT
TTTTACTTCGCTTCGCGATTAGAGTTGTACGCATCATGCATGGGAATCCTTCCGTCCTTGATGTT
AACGCTCTCGTGCGTAGGTCCCGGGTCAAAGGCATCTCGAAGGAAGCTGCTCCGCATATGCGATC
ACCTCCATGTACCTACAGATGAGGGCTCCAACGCCTACTGTACAATCATGTGGGAAGTGCATCCT
GCACACCAGAAAGTCAGTGGCGTACGCCACACCCCCTCCCCCTGTACCTACACCCATTGAAACGT
TTATTGTCTGACAATCTCCGACGCGACGCGCAACGCCCCATGCAAATCCCTACGTCGGTCGATCG
ATGCGCACAGAAGGAGAGCTTGTCCATAACGAAAACGCGTATGTT
Right flanking sequence: Indices 205425 -- 205924
CGGTCAATCGATTAAACTATTTCTGTATAGGGGCAGCCGGGCCGTATTAGCAAGCGTGACGTGCC
GGACTGACCCAGCACGTCTTTCTTTCCTGGCAACAGAAGATGCACAAAGTGGTTTCAGTAGCACT
ACCGAGTTCGCATCAGCGATTTTCTCACCAAACAAGCAACGGATTGAGCAACTAGCGCTAGTTGC
GGCGCATCCTCTTGCTTGGAATCAATGGGTTTTGTCAATGAATTAATCTAATCTACCGGCATCGG
AGGGAGAAGCGGAGTCGGGAGCTGGAGGAAATAACACTTTTTGATGGACGGGAGCGGGAGGGAGT
CAATTACAGAAAGAGTAGAGACGGATATGGGGACTGTAGCTCCGACCATGTCAACTATGATGCTC
TCGCTGCTGCCAGTCCTTTCACCAGTGAATGCTGTCATGCGCTACTTCCCGAACCTCCGTGTCTA
GGTCCTGCCGAAAAAGACTGCAAATGATTTACCATCCATCCCACT
Found at i:208034 original size:6 final size:6
Alignment explanation
Indices: 208025--208168 Score: 252
Period size: 6 Copynumber: 24.0 Consensus size: 6
208015 TTATCTATTC
* * * *
208025 TAAGTC TAAGTC TAAGTC TAAGTC TAAGTA TAAGTA TAAGTA TAAGTA
1 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
208073 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
1 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
208121 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
1 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
208169 GTTTCTTCTT
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 137 1.00
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (6 bp):
TAAGTA
Left flanking sequence: Indices 207525 -- 208024
GAGGCAACGGCTGTACTCGGCACACAGACCTGGCTTATGAGCAGGATTTATCAGCCAAGTGCGTA
TGGTTGCTACCTGTATTCTGATAGGCCACTTAATGACACTGGCTCCCAGTTATTGACTTATGAAG
AATGGCTTCTCGATGGACAATAATAGGAAAATAGGAAGCTGCAATCAGAACCGGCTAACTAGACA
AAAGGAGAGAGATTGGCTCAGTTCAGTAGGAGGAATTTCTACCGATTATTGAGTGGTTTGTTTCC
TTTCCCCTGAAAGGTAAAATGGTTTATTTGCACCTGTAGTGGGACACCTCTCCCAGCTCCCAGCC
AGGGTTCAAGCAGGAAACTATGTTAAGGAGCTGATCCGAATACAGATACAAGGCCCCCACTCATC
ACAACGAACGGTGAGCTTTCCCACTAGCCTTCACAGGAGCAGCACAATCATGGCCAAAAACAAAA
AAAAAGATATCGTAGTACGAGAAAACCAATGGCATTTATCTATTC
Right flanking sequence: Indices 208169 -- 208668
GTTTCTTCTTTTCTTTTTAGAGGACCTGGCCAACTCTAATTCCAATGCTGCAATCCTATTGGTTT
ACTTAATGAGGGTGGGTAGACCGAAACGCTGAAGTGTTGTTATTTACTTCCTTCGATAACATAGA
TTGTCCACTCTTATGCCCCATGCATAAAAATGGCTTGTGCTTTAGAATAAAAGAATAGAAAAAAA
GTAGGTGGATCGGGATCGCTATTACGAGTATTCGAGTTCTTGTTTTCCTTTCCTTGGAAAGGGAA
TTATTTCATGAGAAGTGCACCGGTAGAAATTGGACTAAATATGATCTTGATCCATAGCTCGTCCA
CTTTCTTGATAAACGACTCGATGCATTTTCTCTTCCTTGCCGCTGAGACATATCAAAAAGATCTA
TTACTAAAAGGAGATTGGGATCATCCTGTGGTTACCGGATGATGGGAATAACTAAGCAGAAATTA
GGAAATGAGCACGAAATGTCTATAAATGAATTTTCTCATTATTTG
Found at i:230614 original size:5 final size:5
Alignment explanation
Indices: 230604--230669 Score: 132
Period size: 5 Copynumber: 13.2 Consensus size: 5
230594 CTAAGTGCGC
230604 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
230654 TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT T
230670 GTAGTACCTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TCTTT
Left flanking sequence: Indices 230104 -- 230603
TAACGAATTGGATAAGATCGGAAGAAAGGCCCTATTGTTAATGAGAATAGTAATTCACTATCGCT
ACTGCTCTACTTTGACACAGGATCACATCACTGCCCTTCCAGTGAGTTCGGAATGTTTGTCCTAA
GCATTCAATACTTTTCTAGATGACTTGAACTTGTTTCAGAAGTGGGGCCTAAGCAAGAAGAAAAT
AACAATTGAGAAACTACTTTCGAAAAGACAATAGCCAACAACATAGATTTGCCACGGACAAGGAT
CTTGCTACCTTATTGTGAATTCCTTTTTTATTCAATTGTGTACTCGTTCCTGTTGTTGTGCCATT
AGTGACTTGAGAAGACTGTGTGAAAGAGAGCACGATGCCGACCAAGTCACAAAATAGGTTCTCCC
GATTTCAAAGTAATTTGTTGATGCTTACACAATAGGTAGACCCCACTCTTCTCTTTTTCTCCCGT
CCGCCTTGCCTTTCTTCGAAATGACACTCTCTTTTCTAAGTGCGC
Right flanking sequence: Indices 230670 -- 231169
GTAGTACCTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTAT
TAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTA
TTAGTAAGAGTATTAGTAAAAGACTAGCTAGCCACATCCCCTGACTCTCAGTCTCAGTCAACTCA
AGGTGAGAAGCGAAAGGCCAGCAACTGCACTAACTGAGGGACACATTGAAAGCAAGAAAGAAATA
GAACTTAGACAAAGAACAATAATACGATACTGAAATCCGAGTCGGCAATGGGCCGGAGAAACATT
CACTCGTTAGCGACTCCTACTAAACAGCCAGACAGAGAAGGAAAGCAATGGAGATTTTTCTATTA
TCTATTATACATTCCCTGAGAAAGGAAAGCCTTCGCATACTCGCCCTAGCTCTGAGGCGACTTTA
TTGCTTGGGTTAGTTGCCCTGGGTCAAAAGGGGACTACTCCTGAA
Found at i:230689 original size:6 final size:6
Alignment explanation
Indices: 230678--230817 Score: 262
Period size: 6 Copynumber: 23.3 Consensus size: 6
230668 TTGTAGTACC
230678 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
230726 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
**
230774 TATTAG TATTAG TATTAG TATTAG TATTAG TAAGAG TATTAG TA
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TA
230818 AAAGACTAGC
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 130 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
TATTAG
Left flanking sequence: Indices 230178 -- 230677
CTTTGACACAGGATCACATCACTGCCCTTCCAGTGAGTTCGGAATGTTTGTCCTAAGCATTCAAT
ACTTTTCTAGATGACTTGAACTTGTTTCAGAAGTGGGGCCTAAGCAAGAAGAAAATAACAATTGA
GAAACTACTTTCGAAAAGACAATAGCCAACAACATAGATTTGCCACGGACAAGGATCTTGCTACC
TTATTGTGAATTCCTTTTTTATTCAATTGTGTACTCGTTCCTGTTGTTGTGCCATTAGTGACTTG
AGAAGACTGTGTGAAAGAGAGCACGATGCCGACCAAGTCACAAAATAGGTTCTCCCGATTTCAAA
GTAATTTGTTGATGCTTACACAATAGGTAGACCCCACTCTTCTCTTTTTCTCCCGTCCGCCTTGC
CTTTCTTCGAAATGACACTCTCTTTTCTAAGTGCGCTCTTTTCTTTTCTTTTCTTTTCTTTTCTT
TTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTGTAGTACC
Right flanking sequence: Indices 230818 -- 231317
AAAGACTAGCTAGCCACATCCCCTGACTCTCAGTCTCAGTCAACTCAAGGTGAGAAGCGAAAGGC
CAGCAACTGCACTAACTGAGGGACACATTGAAAGCAAGAAAGAAATAGAACTTAGACAAAGAACA
ATAATACGATACTGAAATCCGAGTCGGCAATGGGCCGGAGAAACATTCACTCGTTAGCGACTCCT
ACTAAACAGCCAGACAGAGAAGGAAAGCAATGGAGATTTTTCTATTATCTATTATACATTCCCTG
AGAAAGGAAAGCCTTCGCATACTCGCCCTAGCTCTGAGGCGACTTTATTGCTTGGGTTAGTTGCC
CTGGGTCAAAAGGGGACTACTCCTGAATCACATTAAGTATATAGGAAACGTAAAGGGAGATGGGA
GCATCTCTCCATCCGACTTCTTCCTCTCACTCGGCCATCTCTCCCACATCATCCTATTATTTACC
AAAAACTTACTGAGTGAATAGCGAGTTTTCATAAACCTAATAAAG
Found at i:244945 original size:21 final size:21
Alignment explanation
Indices: 244919--244961 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
244909 CAAGGCCTAA
**
244919 TCGACCTTCTAGAGCAGATTC
1 TCGACCTTAAAGAGCAGATTC
*
244940 TCGACCTTAAAGAGCGGATTC
1 TCGACCTTAAAGAGCAGATTC
244961 T
1 T
244962 ATACTAGACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (21 bp):
TCGACCTTAAAGAGCAGATTC
Left flanking sequence: Indices 244419 -- 244918
TATGCATTCCTAGAAGCGTCTTTGCTTTCTTTCCGTCTGCTGAAGCAAGGGGGTACCAAATGCGA
TTCCATACTAAACAAATAACGATAGCCCACTGAGGTTAGCGAGCCTGAAAGCCCTATTACTCAAG
AAGGCTGGCTGTTCTCGAAATAGCTTTGATAGAATGGTTTCGTGCTAATGCTGTTTCCCAACCAG
GATTCTAGCTACTAACACAATCAGCTCCCAACGACCTACTTGCTGCTACAGCTACTGGTACCAAC
CAATGCAATGCCGATCCCATTCCTTTCCTCTTGCCATGACGGATATCAGCTCCCAACAGAACGAG
AAGAGAATACGACCGATGCCAAGAGCTTTCCTCGAACGATGACTGAGGAAACACATCCAACCTCG
AATGCTGAGACAAGACCGGGCACACTTCTATAATATAATCAAAGTAATATAAGAAAAGGGCCGAG
AACTTTGATACCAGTGGAGTGCGATGACATGATGACAAGGCCTAA
Right flanking sequence: Indices 244962 -- 245461
ATACTAGACTTGTGGCTTCAGGAGATGAAAAGCTTGATGAACCCCGACCCACTAGACCAAGTGAT
TGATGTTGCATTTCGAGCACAGGCACCTTTGACCTAGCTTTCGACAGAGAGAGACAAATGGGAAT
GCCAGGCACAACTCTTTGCTTTGAAGCATGAGAGAACGAGAACATTTCCACTGCTTTAGTTGCTA
GAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTAGTACTAATCCCATTCCTTT
AGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATTTCCTTGCTTCATAGGTTTC
AGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGGCCCGGTGGAGCAATCTCGA
ATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTCCAAGTGGGTCGAATAGGAC
TAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGGGA
Found at i:245649 original size:6 final size:6
Alignment explanation
Indices: 245638--245785 Score: 296
Period size: 6 Copynumber: 24.7 Consensus size: 6
245628 TAGCTCTATA
245638 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
1 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
245686 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
1 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
245734 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
1 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
245782 CCAT
1 CCAT
245786 AGTAATACTG
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 142 1.00
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (6 bp):
CCATTT
Left flanking sequence: Indices 245138 -- 245637
TCCACTGCTTTAGTTGCTAGAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTA
GTACTAATCCCATTCCTTTAGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATT
TCCTTGCTTCATAGGTTTCAGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGG
CCCGGTGGAGCAATCTCGAATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTC
CAAGTGGGTCGAATAGGACTAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGGGAC
AAGGTTGGTTTACAGTACAGACAGTTTCCTAGCTGGCACTTGAGAAGTGCTCGTCTAGTTTAGTG
ATTCCTAGCGTAGAACCCTTCTGTATGAGAATAGTTTCCAGATTATGACCTTCTCTTTTGATTGA
GTGAATAGCCATGCCATGGATTCTCTTTTCTGGGCTAGCTCTATA
Right flanking sequence: Indices 245786 -- 246285
AGTAATACTGCCTTGGTGAATCCCTTATCTTGTTTGCAGCATCATTCTCGATCCCCTTATTCCCT
TCCCAACAAGCAAGAAGGAATCATATCCTACGGCTAACTCATCCTTATATGGCTCCCAGATCCTT
AAAGAGAATCAAAGGCTATCTCGAGGGATGGTCAGAGAATCGGTTTATCTTCACGGCACTAGACG
GCACCTTTATGAGTGCGTATAAGCTTGCTTTAGAGCTAGAGCGTGCATCTAAAATAGTTTCATAT
CCCTTTCCATCGATCTTTCTTGGTGCTGTAGTACCCATTCCTGCTAGCTTGATCTGGTGGCCTTC
TCTTGGCCAGGACTATATATAATAGTTTATTGAGTGCTTCTTGGGTTGGTTCTCTTGAAGTGCAT
AGCCCGGCCCCTTTTCTCTTTCTTCCAACGGAAAGGGTTCTCTTCTCTTCTGGTATGGAGTTCGA
CTAGAGCCTGCCGCTTTTCCAGGTTTGGGTGTGGGTGGATCTCAT
Found at i:248812 original size:27 final size:27
Alignment explanation
Indices: 248774--248829 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
248764 CTGATCCCCA
248774 TTTCTACAGCTTGCTTTTAGCTGACGG
1 TTTCTACAGCTTGCTTTTAGCTGACGG
*
248801 TTTCTACAGCTTGCTTTTAGTTGACGG
1 TTTCTACAGCTTGCTTTTAGCTGACGG
248828 TT
1 TT
248830 AGGTTAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.20, G:0.21, T:0.45
Consensus pattern (27 bp):
TTTCTACAGCTTGCTTTTAGCTGACGG
Left flanking sequence: Indices 248274 -- 248773
ACCTTTACTCTTGATTTGCGCAAGAGTGCTCGTCAGTGATCTCCATTCACAAAAGTGGAAAGGAA
TGTTCCATTGCCACGAACAATATGGGCTTTCTCATGGATTCCCCTTTTTCTTCTACACATTATAC
GTTACTCATTGGGTTGATAACAGAGGATAGATCGCGTCAATTCACTAAAGAAAAACAGCTTTTCC
TGAGATTTCTGGCCCGATACCTTCCTGCCGATCCGGAACGGCGGATTCAGCTTCAATCCGAGGGC
TTCCTGTGGCTGTTTCTGATTGACATGCCTGTTTCAAAGTGCAGTTCTCCAGGTCACAAGAGATA
GAGATAGAAATGATCCCTGGCCGAGTCTAAGATCTTGGGTTGTTGGGATAGGATTGCTTGATTCC
AGTTGTGAGTGGTTGATCAATCTTTTCTTTGACTGGTCTGCCGGATCACTTCCACTGATTCCTGA
AACCTTTACTTAGAACTTATATGTAAATTCTGCCACTGATCCCCA
Right flanking sequence: Indices 248830 -- 249329
AGGTTAGTTCGTCTACCCACACTGGACTGGCATCAACAACGACTACTCGAACTAGTCGTCCATCA
ACAACAACAACTACTCGGATTAGTAACATTCCTCAGAAATAACATATATCGAAGTCGAAGGAAGA
GCGGAAACCTGCTTCCCCAGAAACACAGCTGTGCTTCACTTCCTTGCCCAGAGACCAGAATATGG
ATTTGGAAAATGAACTTGCTCTTGATCCTCGGTCGATGGTTGATAGCTAGGCTTTCAGGGAATCA
GAAGTTGTGATAATAGGCCGGCCAGTCCGGAACGTAGAGCAGATCTATCGGAGAACAGGGAGCAG
GAAATTCTTGCTTGAATGCCCGGGGCAAGCTCCAGCAGATACAACAGATCCATATCCATAAACAA
GAATGAAAAGCGGATTTCGATTAGTGAATGGATGCTATCCTGACCTGGCAAGAGATCAAGATCTG
GTGAAAGACTTCTCTTTTCTTCATCGTTGGCTAGTACTTGATCCG
Found at i:259888 original size:6 final size:6
Alignment explanation
Indices: 259877--259920 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
259867 GGCCTACTTA
259877 TAGCCC TAGCCC TAGCCC TAGCCC TAGCCC TAGCCC TAGCCC TA
1 TAGCCC TAGCCC TAGCCC TAGCCC TAGCCC TAGCCC TAGCCC TA
259921 TTTATACCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.18, C:0.48, G:0.16, T:0.18
Consensus pattern (6 bp):
TAGCCC
Left flanking sequence: Indices 259377 -- 259876
ACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTA
TCGTCGTAGAAGCAGTGACTTTGAAAGATTATGCGGATTGGGTATCCAATCAATTAATCCTCCAA
ACCAACTAAACCGGGGAAGCTGAAGCGGAAATGCAATTCTCGGGTGAGGGAAGGGGGAAGCTCCA
GGAAGGCTTCGCTCGCTCGCTCAAAAAGCTCTAACGCTCGTTTACGAGTGGAGTGCATAAGCCCT
TATTGAAGTAGGGCGAGGCGCGAGCTCGTAAGTCAAGCACGGAACGAGCCTTGTCTACGAAGCTT
CGCTTCATCATCTTGCTTGCTTCTGGCGAAGCTTAACGCACTATAACATAGGCATGCATGATGGT
ATGGTAGGAAGACTCCTTTTAAGGCCGACCACTACATAGGAGCGATAGGAAGCCAAGCCGTCAAA
AGGAAAGGCGAGCAGCCCTTATTGCAATAGCAAACGGCCTACTTA
Right flanking sequence: Indices 259921 -- 260420
TTTATACCCTTTATCGGGGACGGGCCTTACAAGCTCAATAAATTGCAATTCTTCACCTTTTCCTC
AGACAGTGGGAATGAATTTTCTTACTTGATTGACATTGACAGATATGTGTACCACACCGAACAAG
CAATATGTCATATGCTTGATGTACCAGCCAAGCCAGCTCTTTTTTTCTCCGTTCCCTTATCCTTA
GCGCTAAAGTCAAAATAAAATGCAAGAGAGTTTGTATTTGCAAATGAAAATGAATATGGATCTAA
AAAAAATTATATAATCAATCAATAAATAATAATTTGAATAATATAAAAAATATCCTTCGCGTATT
CGTTTATAATCTTGTTGACCCTACTCGCTTACTCCTATTTTCCTGCTTTCTTTTTCGACAGAATT
CATTCTATTCTAACTTTCTTGAAAGAATGGGGTTCTGGGCTCACCCTCTCTTCCTTTTTGAGAAA
GATGGGCTGCCCTGGGAGTCTCGCCTTGGTGATTCTTTCTCTCTT
Found at i:261327 original size:6 final size:6
Alignment explanation
Indices: 261316--261405 Score: 180
Period size: 6 Copynumber: 15.0 Consensus size: 6
261306 ACTGATTTAC
261316 CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT
1 CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT
261364 CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT
1 CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT CTAAGT
261406 AAGTAGCCAA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 84 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (6 bp):
CTAAGT
Left flanking sequence: Indices 260816 -- 261315
CAGTTACGGTCCACGATTGGGATCGCGCACGAAAAGGCTAAACACAGCCTTTTTCTTGTCCTCGG
GACAGCGGGCTAGTCCCGTGCCTGTTTTTTTGAGTTGGGGTACACAATCTTCCTTGTGACTGCCA
AACCAGATTTCCGTTTTTAGGGAGAAGGTGTAGTCTTTTTGAACGGTGGTATCGTCAAGAAGAAC
GAGGCCCGCCCCATTTCTGGGGCGGGGGGAAGGAGAAGTGGGACTGTGGGTCTCCTTTCATTTCA
TACAACCTGATGGATTCGATGCTTCTTTTTGGCTACCTTTTATATGACTCTGACTATTGCTGTTA
ATAGATACCTGCTTGCTTCTTGCTTACTGGCAACCTTTATAAGATCTCCACCTTCAAGCTTGAGT
ACAAGCAGCTCTTTAAAAAAGGGGAATTCCGGTCCCTCCCTATCCTTCATGTGCTCTTTCAAGAT
CACCCTCGACAGCGCAGTTAGGTCTTAGAGAAGGAACTGATTTAC
Right flanking sequence: Indices 261406 -- 261905
AAGTAGCCAACTTCCGATAATCATTCCTAGCTTTGCGCTAGATTCAGTATGGTGATACACATTTT
AGAAATAACAAGGGGTAATAGCTCTTCTTAAGAGAATGGCTGCTTTGGGGGAGTTCTCTTTCCCT
CTAACCTCTAACTCGAAATTGAATAAGAGAAGACAAAGCTACGCATTCACTCGTAGCACTCGTTA
GGCCCCCCATGAATATGCATGGAGCCATGCGCATGATTCCAAGAGTCACTAGAGGCGAAACTAAA
TAAGAATAACCAGTAATGTCACGAATGAATGAAGCAAGCACTTTTAGATGGTATCGATCAGAGCC
AATCCACCCTGTTCTTTCCTGATTATCGTCACTTAAATGAAATCCCACTAGCTGAAATAGAATCC
GTCAAGTAAGAGATAAGCCAGAGATCCAGATCATTAGAATACGTTACCGGTCCAAGATGGGCCTC
ATCGCGAAAAATAGTATGTTATTCCTATCACTAGGAGTAGTAGCG
Found at i:278865 original size:11 final size:11
Alignment explanation
Indices: 278849--278876 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
278839 GGGAATAATC
278849 TCTTTCTTATT
1 TCTTTCTTATT
278860 TCTTTCTTATT
1 TCTTTCTTATT
278871 TCTTTC
1 TCTTTC
278877 CCATGACGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (11 bp):
TCTTTCTTATT
Left flanking sequence: Indices 278349 -- 278848
GCTTGGCAGGATGGGAGTGAATTAAGGTCGAGGGAGCAGGAAAGAGTTTGTTATTCGCTATTGGC
TTAGTACGGCCTATACATAATAGGGCCATGACGGTTTTGGCAAGGCCTTGAACTTCATATATCCC
TTTTTTACTCAATCCAGAATACCGATAAAGTCAGATTGAATCATTTTATCGACCTTTCCTTTGGA
TTTATTATCATAGGTAGTGTTCGAGATCGCCTCTGTGCGGTGAACGCTCGAATGTAGATCAGTTT
TGTCCTCGCGTGGTTGAAGGAGATGCTGCTGCTGGATGGAATGCTTCCGGGGCGCCATGATCCTT
CTATCAGGAATAATCGAGGGCACTGACTGACTGCATCAATCATCGCTCAGTGAGCTATTAATTGC
CGCCAATAGCGCTTCGCTTGCATGCAAGGCGGCTAATAAAAGCGCCAGGTAGACGCGCGGAGATG
CATTTTGAGTACAGGTGGTACTGGACAAGCTCTAGGGGAATAATC
Right flanking sequence: Indices 278877 -- 279376
CCATGACGACTAGGAACGGGCAAATCAAGAATTTCACTTCGAATTCCGGACCTCAACATCCAGCT
GCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACA
TATTGGATCACTCCAGTGCGGCACGAAGCCGCTGACGCTGAGTAGGCTCCTATGCCGCTAGCACG
GTGGAGTAGCGCGTCATGAGCACCGGGCAAAGGGACGGTTGAGCAACTCAAGCGAACCGCTCTAC
CTGACTTTGGATAAAGATAGAAGGGAGAAGGTTGTGAAGGTGGCCTCGTTATCCACACATCTGGT
CGGAGGACCGACCTGGGCGAGCGTAGGCGGGTCCTGGAGTGCCCGTCAAGGGCGCTAGCGCATAC
CCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCT
GTCCAAGTCAACCACTTAATTTCCTGTAATTCATAGCGCCTAACA
Found at i:284221 original size:6 final size:6
Alignment explanation
Indices: 284210--284334 Score: 243
Period size: 6 Copynumber: 21.0 Consensus size: 6
284200 TACTTACTTT
284210 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG
1 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG
284258 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG
1 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG
284306 ATTAAG ATTAAG ATTAAG ATTAAG -TTAAG
1 ATTAAG ATTAAG ATTAAG ATTAAG ATTAAG
284335 GGGCAAAGAG
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 5 0.04
6 114 0.96
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.34
Consensus pattern (6 bp):
ATTAAG
Left flanking sequence: Indices 283710 -- 284209
TTCGGCTCCGCGCACTGGGAAAAGGCTTCCGCGACAGGAAACCGGCTACTAGTTAGGAAGTGAAC
ATAAGGTATCAAGAGGTCCCTCACAGTCAGGTGCGATGCAATTGCCCCCTATTAGTCAAGTACCC
CTCTTCCTATTTTGTTTAGGGGTTAAAATGATGAACCCTTCCGTTCACACGCACCGGCCCCATTC
ACTTGCAACTCGTAGAGGCTGTAAGTAAACAGTGCCCCACTAAATTCAAAGTGACGGTGGGGTTG
AAAGACGAGAGTGCCTACCCCCGAGCCGAGAGTGCCCGCCCTTTCTGTCAAGTAGGCTACTTTTT
CCGGAACGCAGTCCGGAATAAGCGTTCCTGTGTATATAGATATCTTCGATGCTGTCATTTCGAAA
TGTCCGCTTCCTCTTTCACCTCCCAAAAAGCAAAGTTGGCTTGACGAGCGCAGATGAGGAAGCGG
GAGCAATAAAACCAAGAATCTCTTTCTTTTCCAAATACTTACTTT
Right flanking sequence: Indices 284335 -- 284834
GGGCAAAGAGAAGCGCTTTCGCTACTGAGAAAGCGAATGGTCAGCGCGAGGGTTCGACGACTTAG
CCGAGCGTTAGCGAAGCGTCATTCTCATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGC
GTCGGAGACTATGTGCTATAATGCTGAACTAAGGACGTTCCGCCTTATCTATAGAAAGAAGCAGT
CAACTGAGTTCTGAACGAATGGGATCCTTAGTGGGTAATGGCTCAATCAATCTATAGATGGAAAG
CCTTATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCTGTTATAGTTTAGGGGGA
GCAGATGCAAGCTTTTTCTTTCCATAGCCGGCCAAATGACTACCGGATCATCGGTCTACTCTACC
TCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCGC
AGTTGAAGCACCTAAAGGTGAATTTGGTGTCTTTCTTGTCAGTAA
Found at i:292720 original size:5 final size:5
Alignment explanation
Indices: 292710--292764 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
292700 TAAGAAAGCC
292710 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
292760 TATTA
1 TATTA
292765 AGTAAGGGCC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Left flanking sequence: Indices 292210 -- 292709
AGCTACTGGTAATTTCCATTAGTACTAAGATAGATGCCATCGATTGTCCCTCTATGCCGACTTTA
CTGATGGGAAAGAAAAGAGCTTTGCGCAGAAGCTAGATTAAAGAGGGAAGTCAACTGAAGTCGAA
GACTCTCTTTCTTCTTCTTATTCGTCGACACCCGTCCTACTATTTGACTTAGAAAGCCCTGTCTT
GTGCATACTCGGCTCGTGGTTCATTTCACTTCTGCTCGCAGCACTTCCGTACGGGCCAGCAGTGC
CTAAGTCAAAGCCTTTGATTCTTCTCCCAAAGTTTAGTGAAAGTGGGGCAAGATTAGACCTATGA
TGAGACTACCTATTAGTGTGTTGCTTTGGTGCAAGAGGATCACCTATTTTATCATTCGTTGAGGA
GAAGAAAACTGCGAAGGAAGTGATAGATCATGGCACCGGGGATGATGCGATTAAAATATTAGGGA
GGCCACATCCAGTACCACACATTTTCTTCCGTGGATAAGAAAGCC
Right flanking sequence: Indices 292765 -- 293264
AGTAAGGGCCTATGGCTTGGGCTACTGTGACATCTGTTTAGTCATAACTGCTTTTATAATTAATA
AAGGCACTGCGGCATCTGTAATGGACTACCTTCCGCTACTGTTTAGTCTGTTCTCTTTAACTGTC
CCTTTATTGTTTATAGGACTCGTATTGAAGTCTTGGAGTTTGATTTTACTTGATCTTTCTCACCC
ACTAGACTCTTTCAATATCATATAGAAAGGATGAATTAAATATCATTAATCAAGGCGCGTAGCGA
TTAAGGTGAATCCTCACTCTGTCCTTGTGTTCATGATAGCCCTAGGCAGCATAGTTGGTGTCCTG
TAGGAATGGTTGTAGAAGGTAGGCAGTCCCAATCCTAGCCCATTGCTTTGACTTAGTCCATACAC
TCCATGGCTTACATGACATATCGGACATACTACAGCATGAGGCATACTTGGCATACTGGACAGAC
TGCATAGGCTTAAGTAGTAGACTCATGGCTTACATACTGGACAGA
Found at i:293628 original size:23 final size:23
Alignment explanation
Indices: 293602--293649 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
293592 GTGAGACAAA
*
293602 TACTGACTTGTAATCGCTGAGTC
1 TACTGACTTGTAATCGCGGAGTC
*
293625 TACTGACTTGTATTCGCGGAGTC
1 TACTGACTTGTAATCGCGGAGTC
293648 TA
1 TA
293650 TAGTATGCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (23 bp):
TACTGACTTGTAATCGCGGAGTC
Left flanking sequence: Indices 293102 -- 293601
TAGAAGGTAGGCAGTCCCAATCCTAGCCCATTGCTTTGACTTAGTCCATACACTCCATGGCTTAC
ATGACATATCGGACATACTACAGCATGAGGCATACTTGGCATACTGGACAGACTGCATAGGCTTA
AGTAGTAGACTCATGGCTTACATACTGGACAGACTGACTCCTGTAATGCTTATTGCCAATCTAGC
TAATGGGCTGACTTCATTGGCTTGCTCTCCTCACCTATGGATTCGTATTGAAGTCTTGGATGATG
TAGTTTATCAATCTTAGAGCATGGTTCGTACCATACCTGTAGTGCCGTTCCTTGTGGTTCTTCTC
CTGTGGTTGCTTTAACGAGCTGGAAGCGCTTACATCGCCTTCGACCGGCCCAGCGTTGCCGAAGA
GGATTCGAAGACAAATGGCAATGAAAGGTTGTGGGAAGAGCTTATTTGAATGAAAAGAGCAGAAA
GAAGCAAGTCGGGGTGAAGAAGATGGCTCCGTACGGTGAGACAAA
Right flanking sequence: Indices 293650 -- 294149
TAGTATGCTCTTTTCTCTCTTTCTTGCAACTTCGTTCTTTTCTTTTTTGCATCCTTTTCTCAATG
TCTTATTTGATCTCTTCCACCTTGCCTATGCCTATCGGGTATCCTGCCCCGGTGTATGTACCATA
ATGGATTTTAGCATAAGAACAGTGCTCTTCCTCGTTGGCTCGGTCCCCCCTCTCTCGTTGTCAGT
TTGTCCACTAATTCTTCTTACCAAGGCACAAATCTGCTGCATCTATTTCAAGAGTTGCACCTCAC
TCGTCACCACGCCATATTGGCTTTTCTCTTTCCACTGCCTCAGCCACCACTCCTTAGCTGCATAA
TCCTTGACGAGATCGTAATGTTTAATTAGTTCCAGCCACGCTGTGTCAGATTTCATTCCTGATGC
ATTTTTCTTTTATTGTCTGGTGATTATCTTTGAAAAGTCGGCACCCGTAGAGATAATGTAAACAG
ATCTTCAGTGCGAATATTAGAGCAGACAACTCCAAATCGTGCGTA
Found at i:303716 original size:18 final size:18
Alignment explanation
Indices: 303695--303732 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
303685 CATATCTGAC
*
303695 TTCTTCTTCTTAGAAGCT
1 TTCTCCTTCTTAGAAGCT
*
303713 TTCTCCTTCTTAGAATCT
1 TTCTCCTTCTTAGAAGCT
303731 TT
1 TT
303733 GATATTCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.24, G:0.08, T:0.53
Consensus pattern (18 bp):
TTCTCCTTCTTAGAAGCT
Left flanking sequence: Indices 303195 -- 303694
AAGCTGAGACTATTATTATGGAGAGCTAAGGGGCGAGTCACTACTTGACTTTAGTGGAGAGTCAA
CGCAGCGGCAAGCAAAGCCAAGTGATCAGCGGTGTTGAAGTAAAGACCAGCTAAGGTTTTTTTTC
CACAGCCTTAATCTTTTCGGATAGTATGATAGGACTACTCGGCAGATAGGAATGCCAGCATCGAA
GAAGAGAGCTACTCGGCTCGTAGAGGACTGATCCGATCTTTTTTCAACTCGCTACTCTTCTCCTG
CTAGCGGATTAGCTCTTATCTTCAGCCCCCGAACTTACACCCTTGTGTCGGGCTGTAGAAAATGA
ATGGTAGGGGGATACAGCATAGTGAAGCTAGATATGGTTCGGGTGGTACCCTTGGAAGGGGTCCC
TCATAGATCGATAGATCTACCACTTTTATTACAGGTATTTCTTGATCTTACGGATGATCTCATCT
ATCTATTTATTCAGATTATCTGCTTTCTTCTCAGGCATATCTGAC
Right flanking sequence: Indices 303733 -- 304232
GATATTCTGTGAATCAGAATTCATCTGATCAGAATTAGCCAATTCTCTTTGGAGATCTTCATTTT
GCTCTAATAAGCTTTTAATTAACTTATAGGAAGTAGGATTCAAACTTTTCACATCCCCTTCTCCT
ATATGAAGAGGTTTTGTTCCTACCCATTTGTTATTTTTGTCAAAAACGAACTCTCGCTTCTTACT
TCCTATCCCCATAGTGATACGTGCCATTTTCTTTTCCACCAATAGCTTAGTTCTTACTGAACTTT
AGCTCATATTCAAATGTCTGCTTGAGATAAGGGTCATCTAGCTGGTTTATGAACCACTTTTCATC
GGCCATTTCTTTACCAGCACCTTTATGCCTCATGATCTTTTCATCTTCGACCGTCTGTAACATGT
AGGACTTGGGAGCCAGGAAGACCCCCTTAGTAACATCGTGTTCTTTCTTAAACTCACCTAATTTG
GTAGCAGATACATCTTCAGCAGGAAGAGGGTGCTTAACTACAATA
Found at i:309107 original size:5 final size:5
Alignment explanation
Indices: 309097--309167 Score: 142
Period size: 5 Copynumber: 14.2 Consensus size: 5
309087 CACTGATCAA
309097 ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT
1 ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT ACCAT
309147 ACCAT ACCAT ACCAT ACCAT A
1 ACCAT ACCAT ACCAT ACCAT A
309168 TAGTAGTACT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 66 1.00
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (5 bp):
ACCAT
Left flanking sequence: Indices 308597 -- 309096
AGCAATAGCCTAGGCAATAGGAAACTAGAACCTCCTATGAACCACCAAAAGGGAAGATACCTCTG
CCCTCGAATGCTTAGAGCCGGATCTTTGGATTCCTAGATCCTTATCAAGAAACAGTAGGAACTCG
AGAAACCAGAATAAGCCTTACCAAGAAGCAGTTCAAACCAGGGAAAGGTGAGTTCTCATCTCCCT
CCCTCGATACTTCCTAGAACTAGATCTCAATAGCGGCGCACTCTCTTCTCTTTAGACTACTCTAC
TGAATTCTGGAGACTAATGAATGGTAAGATCCAGTAAAGCTGAGTCCCCAAGAAACGGTTAGAAG
CAGGAATGCTTACAACTGACCAGGCAAGGTAGACCCGAACTCTAAGTTAGCCCCGAGACTAGGAA
AGCTTGCTCCACCCAAACCGGGAATGCTCTGACCTTTCCACAAAGAGATCAAACATCCATACCAA
CCTTTCCTTTCTGGAAATCAAACCTTCTCAAAAAACACTGATCAA
Right flanking sequence: Indices 309168 -- 309667
TAGTAGTACTGCCGGCCGGAAGGAGCTCACAACCAAGGGAAGCGGAGACCTATCCGGGACTTGAC
TTTTCCTTGAAATAGCAGTTACCAGGAAAAGCTAAGGTTCTATTCGAACTCCATACCATCTGAGA
ACCCTGTACAACGGATGAAAGAGAGAAGGGGCCGGGGCAGGCAGATAAAGAAAAGGAAACAACCT
GGGCAAACCAAAATCTTTAATAAAACTTTTGATGGTGAATCCTCCGCAGTAGAGAACAGCATCTT
TTGCATCTGAATGCAGGAGAAAGAAGACAGCAATGTCAGGGCCACCAATTCCACAGCTCGAGGAA
TCATCCGGGGCAGCAGATTCGATTGTTCGAGGAATCCATTCTATTTTGAGGGCGCCCAAGGCAGT
GAGCGCTATCTACAATGAGTATAAACCCGATCTAATCTAAGATCTGTAGTCAAAGCAGAAGATCA
ATCCAATCTAGGCTCACTCAGGCAGAGGAGGCTTATATCAGTTCA
Found at i:311429 original size:15 final size:15
Alignment explanation
Indices: 311409--311438 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
311399 AGGTCACTCC
311409 TCTAGCTACTTCCTA
1 TCTAGCTACTTCCTA
*
311424 TCTAGCTAGTTCCTA
1 TCTAGCTACTTCCTA
311439 CTTCCTAGTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.40
Consensus pattern (15 bp):
TCTAGCTACTTCCTA
Left flanking sequence: Indices 310909 -- 311408
AGTGCCGGCTTATCCATATCTCGATTCTAGAGCAGTGCCGGTAGAGAGGGATAGCCAGGTATCTT
AGTCATAGGGTGAGTGTAGTCTGCGCATCTAAGCTTGTTTCCTAGGATTTCTGTTTCCAGGTGGA
TACGGTGGATCGATCGAAGTTGGAACCATACAGGAACTAGGTAAATCATTTATGCGAGGCTTTTC
TACCACGCTTTGCAGCAAATACTGGAGATGTACTCTAGGAATCCGGGGTAGCTTGTAGTGACACG
GCTCCCATCTTGTCTTTTCTTTGGTAAATATCAGAAATCGAATAATGAAAAGCAGGGAACACATA
CCCAGTGAAACATTTCTCCATGCCGGGAATAGATAGCTCCTTTCCCTTCCTCTTGGAGGTCAAAC
AACAACCATTTACTTTATAGCTCTTACAAGGGCGCGGCCAGCTCAATCCGGTGCTTCTTGTCCAA
CGCTCCGTAGAGCATGAAAAAGCTAGTGAATCCACAGGTCACTCC
Right flanking sequence: Indices 311439 -- 311938
CTTCCTAGTCTTCTTCCCTAACCAACTTCCTACTCCCCGGTTCTCCAACTACTTGCTTGACTCTT
CCTCCGCTTGCACAACTCCCGAAACCAAACACCTCCTTTCTTTCTCGAAACCAAGACCTCCGGCA
CTTCCTAGCTCCATTTCTTCCGACTTCCCCTAGAATAGAGTCTTCCTCTTGCTTAAGAAATCAAC
CTTCTCTTTTCCTGGTCTTCTCGGCGGGTTATATTGTTGTCTCTTTCTACTATTTAGAGCGAATC
CTCACTCTAAGAGGTCTCGTGATAAGGCTACAAGGACCTAGTATGCCCGTGTGGAAGAGACCAAT
GCAAGGTCAAAAGCAACTTCGTTTTCGTTCTCACCAGCACAGAGTCTCCCTTATCTTATGATTCT
GCCCGCATGCCAGTACTTTGACATAGACAAACTCTGAAATAAATGCTATTTCAATGTTCAAAAGC
CGGGACATTCATTCCTTCACCGCTTCGAGAAAAGGGTTGGTTCAA
Found at i:314046 original size:22 final size:21
Alignment explanation
Indices: 314021--314068 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
314011 GTTGTCTTCC
314021 AGCATGGCCTAATAGAAAATAT
1 AGCAT-GCCTAATAGAAAATAT
**
314043 AGCATTTCTAATAGAAAATAT
1 AGCATGCCTAATAGAAAATAT
314064 AGCAT
1 AGCAT
314069 AGAATAGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (21 bp):
AGCATGCCTAATAGAAAATAT
Left flanking sequence: Indices 313521 -- 314020
TCTTTCTACTTCTTCAAAGACCTAGCTCATCTACGTAACTCTAGCCCCCATCCCTGTTTTTTATC
AGCCTCTTGTCCTTGAAGCAGGAGCCTACTATTGCATGTTCCATACCTCAACGAAGTGGGTGCCA
AGTCTTTCCCGATCTCACTTATAGGATTGCTAATTGCCTCCCTGGGAAAACAGATCTCACATGAA
CGTTAGGACTTTCCGACACAAAGGGAGTAAAGCGGATGGAAAAGGAAGAATTCCAGGAAGATAAG
CATTAGGAGTCATGACTCCGCCCTATCCATGATATTATAAGAATAGGCTATTAACTCGGATGCCA
AAGCAAAGGATGGATTTCAGGAAAAGACAAGCAACTCTCATGCTCTCGCTCCTTTAGATAGCTTG
ACTCTAGCAAGCACTTCTGGATAGGACTGAAACTCAATAGGGCAAAATAGATCCCTCATTTTCGA
ACGAGTTGCTCTTCGATACCATAAAGTAGCTAAGAGTTGTCTTCC
Right flanking sequence: Indices 314069 -- 314568
AGAATAGAGTAGTAGGTTTAAGTAGCTCTCCAATGGGCAGCTATATCTGGTCTTTACATCCTACG
CCTTCCCATCAATCAATACCAATGGATCTTTCCTATGAAATAGAAGAATGCATGCCCTGTGGGCG
GACTCTAACCTTGATGAGGAAGAGAAAGAAAGGCAATTAGAAACAAGCCTAGCATGAAAGAATGA
GCGAGCCTATATATAACGCCCTCTCTTTTGACCATTATAAAATTATACTCAATAAATTGTGGAAA
ATATGTTCCAATTATTCAATTTGTAGGCAAGTAGAAGAAATTCGCCTGCCTAACAAAGCAACCAA
TGCAAAGGAAAAAGTTCAAGAAGGATGGTCTGCGCTGAGGGAGAGTCAGTATGGGAAGGAAGGCT
TCAACCAATGCAACGTTGTATGAGCCATCATCCTAAAAAAGTAGGAGCCAGGAACCCTTACCAGC
ACTTGAACGTTTTCACCTCATCGTCTTGAGTCTTGTCTCTCGTAA
Found at i:314054 original size:21 final size:21
Alignment explanation
Indices: 314029--314068 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
314019 CCAGCATGGC
314029 CTAATAGAAAATATAGCATTT
1 CTAATAGAAAATATAGCATTT
314050 CTAATAGAAAATATAGCAT
1 CTAATAGAAAATATAGCAT
314069 AGAATAGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.30
Consensus pattern (21 bp):
CTAATAGAAAATATAGCATTT
Left flanking sequence: Indices 313529 -- 314028
CTTCTTCAAAGACCTAGCTCATCTACGTAACTCTAGCCCCCATCCCTGTTTTTTATCAGCCTCTT
GTCCTTGAAGCAGGAGCCTACTATTGCATGTTCCATACCTCAACGAAGTGGGTGCCAAGTCTTTC
CCGATCTCACTTATAGGATTGCTAATTGCCTCCCTGGGAAAACAGATCTCACATGAACGTTAGGA
CTTTCCGACACAAAGGGAGTAAAGCGGATGGAAAAGGAAGAATTCCAGGAAGATAAGCATTAGGA
GTCATGACTCCGCCCTATCCATGATATTATAAGAATAGGCTATTAACTCGGATGCCAAAGCAAAG
GATGGATTTCAGGAAAAGACAAGCAACTCTCATGCTCTCGCTCCTTTAGATAGCTTGACTCTAGC
AAGCACTTCTGGATAGGACTGAAACTCAATAGGGCAAAATAGATCCCTCATTTTCGAACGAGTTG
CTCTTCGATACCATAAAGTAGCTAAGAGTTGTCTTCCAGCATGGC
Right flanking sequence: Indices 314069 -- 314568
AGAATAGAGTAGTAGGTTTAAGTAGCTCTCCAATGGGCAGCTATATCTGGTCTTTACATCCTACG
CCTTCCCATCAATCAATACCAATGGATCTTTCCTATGAAATAGAAGAATGCATGCCCTGTGGGCG
GACTCTAACCTTGATGAGGAAGAGAAAGAAAGGCAATTAGAAACAAGCCTAGCATGAAAGAATGA
GCGAGCCTATATATAACGCCCTCTCTTTTGACCATTATAAAATTATACTCAATAAATTGTGGAAA
ATATGTTCCAATTATTCAATTTGTAGGCAAGTAGAAGAAATTCGCCTGCCTAACAAAGCAACCAA
TGCAAAGGAAAAAGTTCAAGAAGGATGGTCTGCGCTGAGGGAGAGTCAGTATGGGAAGGAAGGCT
TCAACCAATGCAACGTTGTATGAGCCATCATCCTAAAAAAGTAGGAGCCAGGAACCCTTACCAGC
ACTTGAACGTTTTCACCTCATCGTCTTGAGTCTTGTCTCTCGTAA
Found at i:316962 original size:6 final size:6
Alignment explanation
Indices: 316951--316998 Score: 96
Period size: 6 Copynumber: 8.0 Consensus size: 6
316941 AACATGCTTT
316951 TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA
1 TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA TTCTAA
316999 GTAGTATCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (6 bp):
TTCTAA
Left flanking sequence: Indices 316451 -- 316950
TGAACAAAATGGAAGAAATTCTTCACGATTTCTAGAGTTCCGGGATTACTTCACTGATATCGATT
TTTTCCTAAGCACGGCCTCTACTCTAGGTTAGTTCAAAGTGTAGTACAACGAACTATCGATACAC
CGAAAACGAGTAAAGATGGGTACATAAAATGAAGACATCGTGGATTACCCAAATTGGGACGACGA
TAGGACATTTCACTTTCTTTCGCAATATTTCTGATCATGACTCAACCACTAGGAAAGGGGATTGC
TTACTCTCAGCCACGTTTTTCGCTTATGCTTAGTCAAGTGAGGATTCCATTCGAAGTAACGTAAC
AGGAGCACCATCTTCAAAACTTCTCGGGATCCGGAGTTTATCGAGAAAAGGTCCCATCCTTCAAT
ATCATGATTGGGTCAACCAGATCATAAGTTCAATAGTTTGATCGGGTCGACCAGGTCAGGCCCGA
TCATGAGAATCTCTTGTTTAAGCACAGTCTCTATTAACATGCTTT
Right flanking sequence: Indices 316999 -- 317498
GTAGTATCTTCTTTATACCGTGCCTACAGGGTGTCATTTATTTGATGGAATCGTCCGGCCAGAAA
CGGGGAAGAATCTCTTCTGTCGTAGAGGCCTCGTCGAGTGCTCCCACTCCGCCAAAAAAAGAATA
TGATATAAAAAAGATAAGCGGATAAAAGTGTCCCACCAAGACGCCGATGAAAGACTTTGCAACGA
ATTCCGCAAGTGTATCATTGATGAAGAGCTCGTCAAACTATCGAAAGATATGTTCTAAGAGTACA
TACCACACCTCTGGGCGCCCGGGCCGACCGACAGGCTGAGGGCAATGGAGACAATCCGTTCCGTA
TAGAACAAAGGCGGTGATCCATTCTAAAAAAGGGAGGAAGAGAGAGATCTCTCGTTAGGTCTTGG
TGATGACCGCCGGAGGGGGAGTACGAGAAGGCGGACATCTGGCTGCTATCAGTCGGCTGGCGAGC
CCGGGGTCAGGAGGCCGATACTGTAGTAGTCGCTCCCTGCTATGA
Found at i:318921 original size:5 final size:5
Alignment explanation
Indices: 318911--319040 Score: 260
Period size: 5 Copynumber: 26.0 Consensus size: 5
318901 TTACTACTAT
318911 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
318961 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
319011 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
319041 GTAAATTACA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 125 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Left flanking sequence: Indices 318411 -- 318910
GGAAAGTGAAGAAATTGGCTTCAAGCTTCGCCCTTAACCCAAGATGAGGTGGAGCCTTACCCCGA
CACAAGGTGGGACCCTCCCATTAGGATAGTGGGCTTAGTCAGACCAACATAGGTTGTCAACCAAA
AAGGAGAAGCTCCCGTTATTGTTGGTTTATGGACCTAAGACGAGAGGATTGGGCTTAGAACAAGA
CCTTTCGGTGGATATGATCACATCTTCATGACTAGAGGTGTACACCTTTGGCCTCACTCAAGGTA
ATGGGTGACCAAACCTAACGAGTCTAAACAAATTGGATCTTATTGTGTGACAAAAACAGAGATTG
GGAATGCTTGGCAGGTATTTGAGTACCAGTAAATTAGGGAAATCAAACACATAAAGAAGTTTTCT
TTCCAAGCCTGGTAACACCACACTTAAGTAAGTCGATTCAGATTAGCCAACAAGCGAATCCATTA
ACTCAGTCAACTCTTTCTGGTAAAAGTGCTCATCATTACTACTAT
Right flanking sequence: Indices 319041 -- 319540
GTAAATTACAGACAACACTCAATGCTAATGAGTGGATCAAGTCATTTACTAGTCAATGAACTGAC
TAAACCCTGTCTGTTCTGGGAATTGACCCACTTAACTATACTCTTAGGGCAAGCCGCCCTGTGGT
AATTAACTCCGTAAAATCTGTATCAGTCTTGAGGCAATTTGGAAATGCTAGACAAAGATATTAAT
CAGAGTCAGTCAATTCCCTAGCTACAGTTAATATGAAAAATCCCGGGTAGGTAATTCAAACACGC
CCCACCCAATAGGTGAATCTTTCAAAGTGTGGGAAATCTCCCCTTTCTTCAATCCTAGAATCGAT
GCCTAAGAAAAAGGGTATATCTATGAAAATGCTCAACCCATTCATGCGATTCAATCCTCTGCTCT
GATTCTATTAAAAAGGAAACACTCCACTAAGTCGTACACACTCCCCAATAAGTCTGGTAATTAAT
TCGTTCAAATCAATGCTCGGTGCAGCAGGTAATGTAACTTAATCA
Found at i:322762 original size:29 final size:29
Alignment explanation
Indices: 322720--322777 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
322710 CTCTTACTAT
322720 TCATAACGGTCAAGTACCAGTCCTGCAAC
1 TCATAACGGTCAAGTACCAGTCCTGCAAC
*
322749 TCATAATGGTCAAGTACCAGTCCTGCAAC
1 TCATAACGGTCAAGTACCAGTCCTGCAAC
322778 CCGCTTCAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (29 bp):
TCATAACGGTCAAGTACCAGTCCTGCAAC
Left flanking sequence: Indices 322220 -- 322719
AAAGGACCCGAAATGGCGTGCTGCCATGCTGGATGAGATGGAGTCAATGAAGATAAATAAGGTTT
GGGACTTAGTTTATTTACTGCCAGGGCTATTAGGTAGCTTGGTAAGGGATAGGCCGCAGGTTTGT
GAAACATAGGAGTAGAGGGGTAGGCATTTGGATCGGAACTGGTAGGAAGCAATGGAATAGGTCAG
TAAAATAGGACTACTAGTAAAGGCACGTTATTCGCTAAGAATAGTTTCGTGATAGGTTTTTAGAA
ATAGGAAATTTGATCGGCTTAACTGAGTTTATTATGGATCGTTGCCTGTTGAGTGGAAGGATTCC
TAGTACCATAGGTAGACTTAAACGCAACGTTTTGTTGAACTTTTTTGGAAATTGCTTTTAAGGTC
CAATTCCTTTATCTGTTGGTAATCTAACGAATCTCTCTGAAGTTCACATGGGAGAAAATTCACTA
CTACATACCTAACGCATCTACAAGTGTAGAAAGAACTCTTACTAT
Right flanking sequence: Indices 322778 -- 323277
CCGCTTCAACGTTCTAAGGACCACAAATGATAAGATCTGATACCTGTAATTCCAATTCTCGTAAT
CTTTGATGAATCTCCATAATCTTTAGAGATTCTTGTGGTGTACCCCTCCCGTGTTATCATTCACA
GCTTCGTAGGGCAAGTTCACCATCTCTCTGAGAAAGAGGAGCGTAAGAAAAGGAGGTTCTTTTCC
CATCTCTTTTTGGCAATGGGTTAAGGAATTTAGGGCTGGAAGAGATCTAAGAGTGGATTGGGCAG
CATTAATGGCATGAGCACAACTGTGATCTTGATCTCCTCGCGTCGGCTTCTTGCTCTCTTTCACA
CAGTCTTCTCAAGTCACTAATGGCACAACAACAGGAACGAGTACACAATTGAATAAAAAAGGGAA
TTCACAATAAGGTGGCAAGATCCTTGTCCGTGGCAAATCTATGTTGTTGGCTATTGTCTTTTCGT
AGGAAATAATCATCAACTATGAGAATTCCCTAAGTCTACAAGGGA
Found at i:328956 original size:6 final size:6
Alignment explanation
Indices: 328945--329014 Score: 140
Period size: 6 Copynumber: 11.7 Consensus size: 6
328935 CCTCTACTAA
328945 AATACG AATACG AATACG AATACG AATACG AATACG AATACG AATACG
1 AATACG AATACG AATACG AATACG AATACG AATACG AATACG AATACG
328993 AATACG AATACG AATACG AATA
1 AATACG AATACG AATACG AATA
329015 TTTCCTTTGC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.17
Consensus pattern (6 bp):
AATACG
Left flanking sequence: Indices 328445 -- 328944
TATTGTTCTCTATTACCTAGCCATACACACTCCTTTCTCCTATTACTCGCTAAACACACTCCTTT
CTTTCCTATGCAAGTATCATTCCAGATGCATGGATTAGCATACGTATAATAAATCTCTTACTTAA
ATACTGAGATTGCCCTTCTTCGTATATCGATTTGGGAAGTGTTCCAGAACAAAATTAATACTCCT
GCTGCTAGTAGGTGGAAAACAGGGTCAATTGTGGTTATGTTGATCCATCTGCTTCAAAGCTTCGG
GTGCTTTTGCTAATGAATCTTTTCCTTGTTCGTTCTGATACGACCCATGCCATGGATATGATCAA
TGTAAAGATTTTCTTTTTTTTATAGTTGTATACCACATCATTAGATGAACGATATGAGGCAGTTG
CCAATTGCACTCTTGTTGCTTGTAAAAGTGCATTCAAATCGAGAGTTTTAACGATTGGGACATAG
CCGAGATACGCTAAGGTTGAGGCAAGGCGGAACCTCCTCTACTAA
Right flanking sequence: Indices 329015 -- 329514
TTTCCTTTGCGGAGGATATTCACTGCTACGGAACTACAGCATAGATCTATTATAAAAAGAAAGAA
CTTCAAACTCTTCCACTTACTCCTGTTTGGTTTGCTTCTGTTTTCAGTTGAACATTCTTCTTTTC
TTTGATTTCCAATCAACGAGTACGGGAGACAATGGCTCTTCTTTGCTTTGGCAAAAAGAGAAGGA
GCTCTTCTTGCCCATATGGGAGTGGAAGCTTCAGTGTAAGCATTTCCTCACACTTGTCTTCGTAG
GCCACTTTATGTTGAGCAGGAGGCGCTCGCTGTTCTCGTTGAAGCTGTTTATACAGGTTTTGGTG
GCAATCCGAGTGAGATTGAACCTGCTTTTTAGCTTCTTCGACTCAAGAACACTTTCTTCTTTTCA
ATAGGTAAAAGCACACCACCTTCTCATGACAATCATAGTGCTTCGGTTTCTGTCTGTCTAAAGGT
GTTCCCAGGGGGTAGCTGCTTTTGCATAGAATGGATTTTGGGCCT
Found at i:331054 original size:15 final size:15
Alignment explanation
Indices: 331034--331064 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
331024 GTATTCGTAT
331034 TGTTCATTGCATTGC
1 TGTTCATTGCATTGC
*
331049 TGTTCATTGTATTGC
1 TGTTCATTGCATTGC
331064 T
1 T
331065 TTCCTAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.16, G:0.19, T:0.52
Consensus pattern (15 bp):
TGTTCATTGCATTGC
Left flanking sequence: Indices 330534 -- 331033
GCACTCCACTACGGGTACGGAGGCCAGATAGAAGGATTGAAGAATCCTGATGTGCAGTTCCGGGG
AAGTGAAGAAGGAGACGATGGGGAGGGAGATGGTGAGGAGACGATGTTCCAATGCAGTAGGGTTG
CCGTTTCCTCCGCCCCGGGGAGGGTCCTTTTTTTATGTACTAATCGAGCTTTACCCAGGGCTTCT
TTGGGCCAACGCACAAGCTATTCTTGAGGGTGCCGAAAGAGCCATTTTTCTTGGTGCAGCTGTTT
AGCGGGTCTACAGTTCATTCTTTCTGCTGATCAGAAACCCTATTTCTTGAACTTTGACCGTGAAA
AAGCGATGAGGCTTCTAGAGGCGCAAAAACGCAAAGGCAAATAGGAACATTTGGACCTCCAAGAC
ACGAGTCGAGTCACTAGAGGTACACAGGAAGAAGAGGAAAGCCCTTCCTCAGCAGAGGGTGAACC
GAACTACCTATTCCTATTGTATTCGTATTCGTCTTGTATTCGTAT
Right flanking sequence: Indices 331065 -- 331564
TTCCTAAGCCCCGCAGGGCGTAGATTTCATCCCGTTAGTGTGCATTGTTGAACCCAAAGACAAGT
AGGGATTTTTATATTGATAGCTAAGGGGAGGCGGGGATACCTCTATGGAATCTATTGAATTTTTT
GCATTCCGAGGTGCCGAAGCCGTTGATTCGAAACCTAGGATATTCCCTTTGATTTTGTTAGAGGA
GCCTTTATCCGGGTAGGAAGGTATGGTTGCTGGTATTAATCTAGCTAGTAGGAAGGAAGCCGTTA
AATCCGATACTACCATTGAATGTATATACGAATCCCTTTTCGTAGCAAGGAAAAAGCCGAAACCT
CGGAGCCTAATCCCGTAGAAGAACAACTTTCTATACTACATCTCATGTGCTTTCCTAATGGTGGA
ATTGCCAAAGCTTTGGCCGGGTGGATCATTTCAGTACGAATACGGGGTATAAAAGATACCGGTTC
TACTCCCTTGATGGTATGCTTCTCAAGTAGGGAAGTAGGTTTGGT
Found at i:334974 original size:24 final size:25
Alignment explanation
Indices: 334947--334994 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
334937 GAATACCTCT
*
334947 CTATGACAATACGGGATTG-AATAC
1 CTATGACAAGACGGGATTGCAATAC
*
334971 CTATGACAAGACGGGGTTGCAATA
1 CTATGACAAGACGGGATTGCAATA
334995 GTTACCTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (25 bp):
CTATGACAAGACGGGATTGCAATAC
Left flanking sequence: Indices 334447 -- 334946
ACCAAAACATGCTAGGAACCTGAGTTCTATCATGAACTACTTGATTAATAATACTCTTGTTCCAC
TCCAAGCAGTTATGTGTTGTGAAACCATAGTACTCCACAAGATAGGACTAATACCTCGAAAAAGA
AAGAAGAGTTCTTGGCCTGTTCCCTGGTTCCGTAGCCCAGCTTTTCACAGTAAGCACAGGTCCCC
GTTGCACTTCGCGCTTCTCCCAAACAAAGGCTTAGCCCTCGTTTAACTCCTCGAAAAAGAACAAA
CATGAGAATGTTGCAAACACTGGTCTCTTACAGCCATGACCTATTCCCCTTAGGCAGTGGGCTTT
GGTCGAAATGACCCTGAGAAACCCATTTCTTTGGAAGGCAGGCGTAACGATGAATCCTAACTTGC
TTGCCTACTTCCGATAGTGCTTGCCTATCTCGTTGAAAGAAAGGGCTACTCAACTTTCATTGGTC
TACTTACTGTTTGATCAAGTAGGCCAGCCAGGCGGGAATACCTCT
Right flanking sequence: Indices 334995 -- 335494
GTTACCTACTTGGTAATAAGTGGTTACCGTAGGTAGGGGTTCCGGTTCCAGTTTGATAAAGTAGG
ACAGACGGGCAGCAAGTAGTCAAGACGGGAGTTCCTCACTCAATGTAATCGGTCCGTTCTCAAAG
ACAGGGGGGCAGAAAAGAAGTCCAATAGTAGCCGCCTACTTGCGACAAACTAATAAATAAGTTAG
AAAACTTAAGTAAGTAAGTCCGCCCAAAGACTGTTTCCACTAAGTAGCGAGGTGCGCTCGCTCAC
TTAGGCCAGGCGTAGACCACTAGGCAGCTAAGTAGTTCCCGTATGAGAGCAATTATTGTTGTGCG
GTTGATACTACTGGTGGAATAAAAAGGACGACAGGGTCTCAAGGGCGGCTACTCAGTAACTCTCG
TATTAGGTAGGCCAAAGCGGTAGGGGCATACAAACAGTAGCACTATGGAGTGAGCCCGTGGCACG
TACTAATATGTTCTGTATAAAAACGACAGAGCGCGAAAGAGCTTC
Found at i:337219 original size:5 final size:5
Alignment explanation
Indices: 337209--337290 Score: 164
Period size: 5 Copynumber: 16.4 Consensus size: 5
337199 GAGCATACGC
337209 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
1 CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA CAATA
337259 CAATA CAATA CAATA CAATA CAATA CAATA CA
1 CAATA CAATA CAATA CAATA CAATA CAATA CA
337291 TAGTAAATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 77 1.00
ACGTcount: A:0.60, C:0.21, G:0.00, T:0.20
Consensus pattern (5 bp):
CAATA
Left flanking sequence: Indices 336709 -- 337208
ACTTCCCCTCTATGCCCTGCGGGGCCACGCCCTCCGGGGTTGACGCCAGGGATATATGCTTTTTA
TAATGAAATATTGGTCTACGCCCTGCTTCCTAGTTCGAGTATGAGGAGCAAGAGCGAATTAAAGA
AATTAAAGCGTAGCACTAGCGCTATCCCTTACCTGTAGCGAGCGTAGCGAATTAAAGAAATTCTC
TAGGAGGATTCGTCTGCATCTGGTTAAACCCTTCCTAGAAAAATAGGTTCCTTCCTTTGCTTTGG
AGGTTGACTTTTCGAAGCGTACGAATGGATTACTACGAATAGAGAAATGACGAGCTTATAACCTA
GCGAAAAAGACCTAGCGCAATACGAACAATACGATTTAGCGGCAAAGGCAAAGTATATTCCATTC
AATGGGACGGGAAATCTACCTGATTCCTCCAATCCTACGACTGGTACCAATACGAAACATACGCA
ACGATAAAAGTTACGATGGACGAATCTATCTCTACGAGCATACGC
Right flanking sequence: Indices 337291 -- 337790
TAGTAAATCAATTAAAAAGTTGTGGATGCGGGATTCGGCACGCTCCTCGGCTAAGGGTTCGGATT
TTCTAATGTCATACCCACGAAAAGCAGTTCTTAGCAAAGGCAAATCAACGCCCCGGGCAAAGGTT
TATGCTTCCTTGGGGGTTGACTTTCGATACGAATTCGGAGCTTCCTTCGATAAAAAAGGATTAAT
ACCCGGTAGCGGCTTCCTCTTATGGTAATTCGATATATAGATTTGTTTTCTAAATTTGAGTAATC
ATTTACTTCTCCTGTTTCTACTAAATACGGATATACCATTGCTCCTCCTTTTACGCGGGGCTGCT
TCTACTCGTTCATCGCTTGCCTCACCTCGAAAGAGGCAAGGCTTCTCTCTTCACTCACACGCCTG
TTCGCCCGCTTTGGGATAAAAAGAATAGGGTCTCCCCGACCTGGGGCGGGCCTTAGACGAATGCT
TCTTGGCGGAATAAATGGTATGACACGACCTCTTTTTGCCCATAT
Found at i:344813 original size:5 final size:5
Alignment explanation
Indices: 344805--344834 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
344795 CTTCGCATAA
344805 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT
1 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT
344835 TAAGATTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAAGT
Left flanking sequence: Indices 344305 -- 344804
ATATTTATGTTTATGGGAACCGGCTTGGGCTTGGGCATGGTGGATCCCGCCGGAGGGGAACCAGA
TCGGAATGCAGGTCCTTCTGTTCCCGCTGCTCCGCCCTTACCCCAAAGGCGGGCGGGGGCGCGTT
TTCCAACTATCTTATTGCCCCCTGAGCCCAACGAACCTCCTCAATCGGGGGTCGGGCGCTCAACT
ACTCCTCCGGCTGCTCCAGAACCGAAAACTGCCACAGCGTGTTTGGAAGTAGTGAAAGCCCTCCT
GAATGGGGGTGCGCCGGGAGTTGGTGTAATAATATATGGAACGAACTAAAAAACGGATGTAACTG
TTGCTCCCCGTCCTCCTGCTGCGATGGTCCGTCGTGGATTGATTAAGATTAAACTTCATGTTTGC
ATCGTTTGACTCAATGATGGCCTTTCTGATCTCATTCGTATTCCGACATTTGTCTTTTGCCTCAA
TGATGGCCTTTCTGATCTCATTCGTCTTCCGATCGCTTCGCATAA
Right flanking sequence: Indices 344835 -- 345334
TAAGATTGTCCAGGTCCCTTTTTCAAAAAAAATAATAGGGAGTGCGAGGCCGCTGCCTGCCCGGG
GGGCGGCGGGAAAGAGGAGCGGGTATGTGGGCCTCTTTCACTAGAGTTTCTTTTGTCGGCCTACT
TTGATTGTATTTGACGTCACTTCCTTTAGGAATAGGAATGTGCCCGGTCTGGTGGGGTTGCGAGC
TGGGAGTATACGCCAGCTACCAGCGTACGAGGTTATCAGGTAGGTTCATCCGTATCTTCTTGGTT
TTCACTATCTGGTTCAGCATACTCTTCTTTCCGTGGATCTATTAGTTCTGGGGTAGGTATCGGTA
ACTTGACTCTTCGGCTGGCCAAAGACCGACCTATACCTATTTAGTAGAGCGTTCTTGTTTACTGG
CTGGCAGAAGCCTTCTTTTCACAGAGGCGGAATTCTATACTCTTGCTTCGTAACTGCCCAAACCT
CTTCAACCAATTCAATTGGAGCATCCCATCAATTGCAAGTTGCAT
Found at i:349594 original size:5 final size:5
Alignment explanation
Indices: 349586--349632 Score: 94
Period size: 5 Copynumber: 9.4 Consensus size: 5
349576 ATTCTAATAG
349586 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TA
1 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TA
349633 GGAGTTTGGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAC
Left flanking sequence: Indices 349086 -- 349585
GGTTTGAGTTCTGATCTTGGTCCTCGTGGAGGGATTTCTGTTCAGCGGTCTCCGGACCGAGCATA
TAAGTAAGCAGAAGTATGCCCGCCCTAGAATGCTTCCAAGGGCGCCCCGTGTGACGTAAGCTTAA
TACCAAGCTCTATTCTCATGATGGTGAGCTCTGCTTTCAAATCCAGCGGCTACTATGGGTATGTA
TGGTGGTTGGTCGTAAGTACTGAACTCTGGCTCGCCCAGAGATTTCGTTTGCTTTTGGACTTGAG
ACAAGTTTCTGTAGTCTCCCTCTGGCGCATTTAGCTAGCTGCTAAACGTATGTATTTTGAGATAT
AGAAAAATGTATATAAAACCTTTACCTGATTACAATAACCAGGAAAAGCCCACCGATTCGCCCTA
TCTCTTTAGCCCCACTGCCAAATTCATGTGTTCCGTAGCAGGTGAAAAATGCTCTTGGTATATGA
TACCTACCCAAAAATCTAAAGAGAAAGAGGGTTCTATTCTAATAG
Right flanking sequence: Indices 349633 -- 350132
GGAGTTTGGCCACCTTTCAGAGATTTTTTAAAGAGTGATCACGGATCAAAGAGCAGCTTCAATTT
GGGACCCTTGGATGTTTTGTTTCGGCAAGTGCCATAGTCCTCGGAGCTCAGTAGCTTTTTTTTCT
CCTAAATATGGAAGTGAACCCGACTCATTCTCCTTTATTCATTTGCATATATGAGCATAGTCTCC
GGGGCTCCTCACCTCAGGAAAGGCACCTTTTTTTGCTCGGTTTCCGCGAGAGTCATTGAAATAGA
GGACCTCAATCATAAATAGGAGCCTCGAGAGAAGACGCCTCTCTTTGAGAAGCCTGGGGAAGTGG
TTGAGTAGAGCAGGACGTTCTTCCTTCCATTTTTTTGGAGCCTTTCTGCTTTACTTGTTTGGACT
CGGGTACAGAAATCTCACTTAAAAGATCCATCCGCGAGTGGTTTCAGGCTGGCAGGGCGGCTATC
TTTTACTTATACTTAGCGGGTAACATCTTCCTACAAGAAGAACTC
Found at i:358666 original size:5 final size:5
Alignment explanation
Indices: 358656--358746 Score: 182
Period size: 5 Copynumber: 18.2 Consensus size: 5
358646 GGTTGGTACA
358656 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT
358706 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
358747 AAGATCCGCA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 86 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 358156 -- 358655
CGAGATTTTGACCCTAAAGAAGTGTCTCTATTTAGAGATTTATCTACTTAGATGTAGATGAAAAA
ATAATACTCCTTCTATATTATTCTAGAATATGTATCCCAATCCATCTCGAGTAATTTGTATCAAT
ACCTATTCGGTAGATCCTTTTTTCTGTGCCAGGAACCAGATTTGAACTGGTGACACGAGGATTTT
CAGTCCTCTGCTCTACCAACTGAGCTATCCTGACCATTTCTTGTGCATCATCCTAGTAGAGTACG
TACTTGTATCTATGTGGGACTAAAAAAGAAAAAAGTATTCTAAAATTGGACTTAGTAAATGTCAG
GATAATGATAATGACTTACTTAATAATAGGGATTACTTGCCTATACTATAATATGTTCATTTGTA
TGAATGGGATAAGATCCAAAGAAGTAAGTTCGGATCCGTTTGTGAAAGAGTAGAATAAGAAAGAT
AGTGAATCTTGTTTGAACCATTAATGAAAAATAGAGGTTGGTACA
Right flanking sequence: Indices 358747 -- 359246
AAGATCCGCAGTACAGGTGTAACAGCAATCAAGCTACTAAGGAAAAGGAAAAGGAAAAGGAAAAG
GAAAAGGAAAAGGAAAAGGAAAAGGAAGAAGTGCTCTTTATTTACAATATGGGCTTTCGTAAGCA
TAAATATCAAAAGAGAGGATACCACACCAGATACGGTGCAACATACTTGAGTGGAAAGAGGAGAG
TTTTTCCTCCGAGGGCGAGTTCGATCAGGCAGACATCGCAATGGATGGTTCCAATAGGAATAGTA
GTCCAGTGATTGTCAGTGCATATTCATTAGTATACGATACTTAATACTGTTGCATAGTCTAGGTT
ACCGAATAGGAATAGCATAGCAAAGAATCCTACGTGTGTCACCTACTAGGTTCACAGTAAGGGCC
GCCCTTAATAGCAGACTTGTTAGCTTGGAGTCGTGTATATCATAAGTTGATTAGTAGGTATGAGC
TTACCCCGATACCTTCTCAACCTAGGAACATAATTAGGTAGTTGT
Found at i:358796 original size:6 final size:6
Alignment explanation
Indices: 358785--358838 Score: 108
Period size: 6 Copynumber: 9.0 Consensus size: 6
358775 TCAAGCTACT
358785 AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA
1 AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA AAGGAA
358833 AAGGAA
1 AAGGAA
358839 GAAGTGCTCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (6 bp):
AAGGAA
Left flanking sequence: Indices 358285 -- 358784
TACCTATTCGGTAGATCCTTTTTTCTGTGCCAGGAACCAGATTTGAACTGGTGACACGAGGATTT
TCAGTCCTCTGCTCTACCAACTGAGCTATCCTGACCATTTCTTGTGCATCATCCTAGTAGAGTAC
GTACTTGTATCTATGTGGGACTAAAAAAGAAAAAAGTATTCTAAAATTGGACTTAGTAAATGTCA
GGATAATGATAATGACTTACTTAATAATAGGGATTACTTGCCTATACTATAATATGTTCATTTGT
ATGAATGGGATAAGATCCAAAGAAGTAAGTTCGGATCCGTTTGTGAAAGAGTAGAATAAGAAAGA
TAGTGAATCTTGTTTGAACCATTAATGAAAAATAGAGGTTGGTACAATAGTATAGTATAGTATAG
TATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAGTATAG
TATAGTAAAGATCCGCAGTACAGGTGTAACAGCAATCAAGCTACT
Right flanking sequence: Indices 358839 -- 359338
GAAGTGCTCTTTATTTACAATATGGGCTTTCGTAAGCATAAATATCAAAAGAGAGGATACCACAC
CAGATACGGTGCAACATACTTGAGTGGAAAGAGGAGAGTTTTTCCTCCGAGGGCGAGTTCGATCA
GGCAGACATCGCAATGGATGGTTCCAATAGGAATAGTAGTCCAGTGATTGTCAGTGCATATTCAT
TAGTATACGATACTTAATACTGTTGCATAGTCTAGGTTACCGAATAGGAATAGCATAGCAAAGAA
TCCTACGTGTGTCACCTACTAGGTTCACAGTAAGGGCCGCCCTTAATAGCAGACTTGTTAGCTTG
GAGTCGTGTATATCATAAGTTGATTAGTAGGTATGAGCTTACCCCGATACCTTCTCAACCTAGGA
ACATAATTAGGTAGTTGTCCCCAGCTACGAGCACAAGCATAAAGAATGTTAACATAGAGAGGTCT
GAGAAGAATCGTTGGTTGTGTGTATCTCCTGCCATATAGCTTAAC
Found at i:362216 original size:5 final size:5
Alignment explanation
Indices: 362206--362280 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
362196 AGCCTACTAT
362206 GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA
1 GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA GTAGA
362256 GTAGA GTAGA GTAGA GTAGA GTAGA
1 GTAGA GTAGA GTAGA GTAGA GTAGA
362281 CTCTTACTTG
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (5 bp):
GTAGA
Left flanking sequence: Indices 361706 -- 362205
GTACAGGAAAAAGAGCCAGATAAAATTACTAATTTTCGTAAACATGGTTTTTCTATTTAGTCGGT
TCGAGCACGCTCATTAAACTAAAGAGTTCATTTCCCTATTTCCTCATTCAATCACCAAAACGAAA
GTAGTACTTTTCTTTTGGAAGAAAAAGTTTTGAAAGACACTTTCTTCTTTACAACGATAGCTCGC
CTTACTGCTCTGAAATCCCTACTAGCCATCTCTTCCCTCCCTCGCCCAGGCAGGGCTGGTGACAT
CTAAGGAGGATGGAGCACCTTCCATTGAAGAATAGGCATGGAAGGAATGCCCTATTTATCTCTTT
GATAGAAGAAGCAGCTTACTTTCCACACCTTGCCTACTTGACAACGCTTTTATATGGAGTGGCTT
CAACCCATCACGCATGAAAGTGCCAAAGGATTTTCTTTACGACAACTCAGAGTCGAATTGGTCCT
TTGCAAGTGGACGCCAGCCGTAGAGCCCTAGTTCTAGCCTACTAT
Right flanking sequence: Indices 362281 -- 362780
CTCTTACTTGAAAAAAGAGAAGTTAAGAAAGAAATTCTTATTCGCTTTTCACTTTCACTACTGGT
CAAAGCTCGTCCTTAGAGACTACTGCCTTACTTTCAAGAACTCACTAGGGCTAGCTTATTATCAT
AGGGATAGGTTATTCAGCTTGCTGACAAGGTTAGTGCTTACCAGGCTATATTCTATCAAGAAAAT
TGCTTAGGGATAAAAGAGATTGTCTTATCCTACTTAGGTATTAGGGTTTAGATGACCTCCTCATC
CTCTGCTCGTAGCGTAGGGATCAGGGGCACCGACCAGAAGCTAGACAGAAGAATGACCTTATTTT
CCTTTACTCTCCATTCCATTTGTCCTTCAACCGGATTAATGGTCAACGACATTTACAGCCTTTCC
TTCACACAAGGTTTTTAATCCATCTCCCCTGCTTAGGACAGTAAGGGGAAGTAGCGATATTCCGA
TTCCTTCGTGGGGAATCAACGAAGGCAGCCGGTCCAGCTGCTTTA
Found at i:365413 original size:5 final size:5
Alignment explanation
Indices: 365403--365462 Score: 120
Period size: 5 Copynumber: 12.0 Consensus size: 5
365393 GGTTTCTGTG
365403 TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA
1 TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA TTTGA
365453 TTTGA TTTGA
1 TTTGA TTTGA
365463 ATAGTAGAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TTTGA
Left flanking sequence: Indices 364903 -- 365402
CAATTCACTGGATCGAGTGAGAAAATCCGAATTGTCAACCAACTGTGAGTGGAGTGCAGCTACAC
GAAGAACAGAAGGAAGGGTACACGAAGAACGGAGTCAAGCTCTTGTCGTCTGGTTTCAGGGCCAG
GGCTGGGCATAGATCTGGTAATGGAATGGTAACTGGCCTTCTTTTGCCACTTGGCGAGAGCAAGT
TTTCTTATCTTCGTACTCGTTTCGAGGGTGCCATTGGGTTGCGTACTTTTGTCCCATGGCGAGCT
GCACTGGTTCAAATCCATTTTCTGGTTTGCCGAGGCAAAATCCTAGTGATGACGAAAAACACGGG
CATTTGTAAGTAGTTGAGTGCGCATGCCAGCTGTTCTGTTAAATTCTCCGCATGATCTTGTGATT
GATTATCCGGATCTAGAACCAGCTACGGGTGGGGTCTCCGCATTCCAGATAGCTTGACTTCCAAC
CGGCGTGCAATACTTGACTCGCCATCTCCGGCTGAGGTTTCTGTG
Right flanking sequence: Indices 365463 -- 365962
ATAGTAGAAGCTTGTTTCATAGGATAGGATTCGATTTGCAGGCAGGCATGCTCCGGGAAAGTGCC
GGTTATTCTCATGTTCCGGATCTCTTTCTTGGTCTTGGGTAAGGCGGCAGGCTCAGCAGGGGTAT
ATGATTTCGAATAGAACCAGTGATCAGTTTCCGTTTCGATCCACAAAGGATGCCATGCCGGTTAG
AATATAGCCAGTGATGAACCAGATCTGGATCTAGATGAGTTACCTTGCTTCAGGACTGGCAGGTT
TCTTGAATCATAGCTTACCTATCCCATATTCCGCCGCTTGAAGGGTTTAGGTAGGGTTTCCTAAA
TGAAGCAGCAGAAGATGGCCTAGCTTTAGAAAAATCAAGTACGGAAGTCCGCCTCGGAGTCCGAA
GAGAAGAACAAGTGCTGCTCACTTAGCTGGAAAAAAAGTACTACCTGCATTCCTGCACTAAAGAC
TATTTGCGTATCATAATTCAGTGAATCTTGTTTTTTTCTCCGATC
Found at i:372937 original size:27 final size:27
Alignment explanation
Indices: 372905--372957 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
372895 GATGTGAATC
* *
372905 CTTTAGTGGCTTTTTTACCTTTAGTGG
1 CTTTAGTGACTTCTTTACCTTTAGTGG
372932 CTTTAGTGACTTCTTTACCTTTAGTG
1 CTTTAGTGACTTCTTTACCTTTAGTG
372958 AGTTCGGCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.17, G:0.19, T:0.51
Consensus pattern (27 bp):
CTTTAGTGACTTCTTTACCTTTAGTGG
Left flanking sequence: Indices 372405 -- 372904
CACGGATTTCCCAGACCACATTAGTGTTCGAGGAATTCCCTCTATGAGCACCTTGGCCAGATTCT
TGCTGTTGTATAGCAGGAGCACTTCTTCAATTCTTCGTTGCCCAACGCTGTTGAGGAGTAGGCTT
GCCTAGACCCTTAGGATGAGCCTTGTGAGGAGCTTGTGCATCCAGGTTTGGGGACTTTGCTCGTG
TAGTGGACGGCCTTTTATTCGTAACATTATACGTGTATCACTGAGTGGAGCAGTAGACAAACATC
GGATCAGCGGACTGCCCGAAGATCAGAAAAGTTCCATCTCACTTAGCTGGAAAAACTTCCAATCA
TTTCATAAGTGTAAACTATAATTACTTTTAGCTAACCCAAGCCCATAGCGGAAATCCATCCTCTT
TGAAATCGAGGCTGGATCATGCTCACATACACACTTGGTATAGCTCATGTAGCACTGTACCAATT
TCCTAATGTGATCCTCCCAATTCTCTTTTTCCGTAGATGTGAATC
Right flanking sequence: Indices 372958 -- 373457
AGTTCGGCCTTCTCCTGTTCTTTCAACAAAGCGAGTTCGGCCTTCTCCTTATTGGCTTCTAAATA
GTCGACCAGTTCGCCTTCAGTATAGGGTTGCTCGAAACTAGTAAATAAGAGTGTCTCATCTCTCT
CTAGTTTGACTGGATAAATGAGATTCTCGTAAAGGAATTTGTTGATGATAGCTAGTGGACTCTCC
ATCTCCATAAAGATCAGTCTATACATGGTTGGTAACTGAGAAGAATATTTCGCCGTGGTTATGAA
ATTATCATGGACTGTATAGAGAGGTATATGACTCTGGTTCGTCTTTTCGATCATATGCATGGCTA
TACTTGCATCCCTCTGATGGATCAAATTCGCAAATGTTGCGATAACGGTCTTGCGTTTATTTCTT
TGATTGGTAACGCGACTCATGAGGACTTGCTTCTTTGTTGTCTTCCTTTTACTTTGATCGAAGTA
ATGGATCCAGATCTTGATCTTATCGAAACTGATATAATCCTGCAT
Found at i:375837 original size:31 final size:31
Alignment explanation
Indices: 375799--375861 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
375789 CGGGTCGCCG
375799 AGAGTAACAAGTATGCATCTGCTTATGCTTT
1 AGAGTAACAAGTATGCATCTGCTTATGCTTT
*
375830 AGAGTAACAAGTATGGATCTGCTTATGCTTT
1 AGAGTAACAAGTATGCATCTGCTTATGCTTT
375861 A
1 A
375862 TGGGCTGACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (31 bp):
AGAGTAACAAGTATGCATCTGCTTATGCTTT
Left flanking sequence: Indices 375299 -- 375798
TATAGGTAAGGGTAGTATCCGGAAGCTCCTTTGATCCTTCATCATCGTTGAATAGGTAGATCGGA
TGGGTGTCCTGGATATACTTACCACGTATTAATCTTTTCATTAGATTGCTGAAATTATTTAATAT
AGATTTTTCATCGAACATCATAGAGGATTCTTCTATCTTCAACTCGAGCTCCCTTAGCAACCTCT
CTTTTTCAGAAGGCGTCTTATCTTATCTTAGTAGTAGAGATTACTCCTTTATATGAACGTAGAAG
AGCTAAGGCATCCTCACGATGACCTTGTATGTCAGTTGGTTGGACCTCTTTAATAAGACCCTCTT
TTAGTTTGCTATCGTAATGAGGCAGGAAATCCTTTTCCCAGAAGGCCGCGAGAGCTGCTGTCATT
TCATTTCTATCTCATATCCCATCCAGTGATACACGTAGCCAGTTACGAATCACACACGTAAACAG
CGAGGTCACTTTCAAGCCTTGGATCTGCCTCCACTCGGGTCGCCG
Right flanking sequence: Indices 375862 -- 376361
TGGGCTGACTGGCCTTTCCCAGGAAATACGGATGTAAACTCTTGCCAATGCCAACTAATACGACT
GAGAAAGAATAGCCAGCACTAACAGTTGACAATGGAACAAGGCGGAACTGCTTGAACTGATTCCC
GACAGCTACGACCAACCAGCTTCGCTTTCTTCCCTTCTTCGTGTAGCGGCACCCCCTCTCTTCCT
ATCGTTCTATAAGTAATCGTGCATCCACGAACTCATTAGCCTATTGCTTGTATAGTAGTATAGCT
TTCCTTACTCCAATTCACTCCATTATCTTAGTACGAAGAGAACGAATAGCCAATAAAGAAAGCCA
AGCGCTATGATATTCCGAGAACGAATACGCTTTGGTTTCCTTGGGATTGGAGTCCCATTGACTTA
GACTTTGGAATAGGGATTGAGTTACTTGATATGTCCAACTCAAGAGACTTAACTTAAGTGCACAC
TTCGATGGAAATGGCTTTGTTCCCTCTATGAATGAGATGAGAGAA
Found at i:378374 original size:5 final size:5
Alignment explanation
Indices: 378366--378395 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
378356 CTTCGCATAA
378366 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT
1 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT
378396 TAAGATTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAAGT
Left flanking sequence: Indices 377866 -- 378365
AAAGAGAAAGATAAAGAGAATTAGTTCAATGTTCGATTCATTTTCCGATCGGTAATATTTCGTAG
TGTAGGGCTGGGTTTATTATTCCACTATGTGGGTTTTAGGTTTTCCAGTTTCATTGAAGCAACTC
CTTTCGCTTTCATCTGTTCAACTAAGGATAAGGAGAGGAGGAAGGAATCAAATCAACGAGAAATA
CTATACTCGAAATTTCGAGTTGCGAAGGAAAAGCGTGAAACCCGACAATGTCAACTCTCAACTCT
ACATGTTAGAAGGAGCTAAATCAATAGGTGCTGGAGCTGCTACAATTGCTTTAGCGGGAGCTGCT
GTCGGTATTGGAAACGTTCTCAGTTCTTCGATTCATTCCGTGGCGCGAAATCCTTCATTGGCTAA
ACAATCATTCGGTTATGCCATTTTGGGCTTTGCTCTCACCGAAGCTATTGCATCGTTTGCCCCAA
TGATGGCCTTTCTGATCTCATTCGTCTTCCGATCGCTTCGCATAA
Right flanking sequence: Indices 378396 -- 378895
TAAGATTGTCCAGGTCCCTTTTTCAAAAAAAATAATAGGGAGTGCGAGGCCGCTGCCTGCCCGGG
GGGCGGCGGGAAAGAAGAGTGGGTCGGTGGGCTTCTTTCAGTGTGATTTGCTCAAAGGAAAGAAG
GGTTTTCGAGAGTCGAGAGTGAGGGGAGGCTCTCTTTTCTACTCTAACTCGATACTTTTCTCTAC
TCTAGAGAATGGCGTGGCCTAACCCGAGCGGAAGCGAGGCAACCCCCGAGGGGCATTGATCTTCT
GATATTAGAATCTATATACGCTATTTCCGATCTGAACTGCTTTAGTGAGTGGATCCCTAGTCGGG
AGCCACGAACGGAGGGAAGAGCCCCAGAAGACTTGTCAAGCGGATATGGGGATTTCGCTTGGGTT
CTCACAAAGAAAATATAGGGTTCCTAGAGTGCCAGTGCCGCTTGCTTACTACAGTGACAAGGGTT
CGGTTTCGAGTAGAGGAAGTTCCCTTGATTCATCCATCTTCCCAA
Found at i:392481 original size:31 final size:32
Alignment explanation
Indices: 392446--392510 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
392436 ACGATATATT
392446 ACTAG-TTTTACGAGCAAGATTCCAACAAGGC
1 ACTAGTTTTTACGAGCAAGATTCCAACAAGGC
*
392477 ACTAGTTTTTACGAGTAAGATTCCAACAAGGC
1 ACTAGTTTTTACGAGCAAGATTCCAACAAGGC
392509 AC
1 AC
392511 CCGGAAACCC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 5 0.16
32 27 0.84
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (32 bp):
ACTAGTTTTTACGAGCAAGATTCCAACAAGGC
Left flanking sequence: Indices 391946 -- 392445
CAAGGCTGTTCTGTCCTAAGTTACAGGCTCTAACATTGGTATCTTTCGTCGGCTGGCTACTTTGA
AGCAAGGGCTGCAGAGTCAAGTTAGGCGCAAGGCATGGTTGGTTGGGGACCAATAAATACTACCA
CATCCTGGGACACCGGAAGCTAAACCATCACCAGACCCAGAAAGGAAACGGGTCAATCAAGTCAC
TTATTTTCTCTAGATAAGGATGGTGCTTTCACCAGTTTATTTGGATAAGGCCATGGTTTTTAGAA
GTTCAACACTTAAGCCATTCTCTGGAAACGACATCAACAGAGATTCTCGAGAAACGAGGAATGAT
GGCTAGGCTAGCGGCACCAAAACATGAAAGGAATCGAGATCGGAGGTATTTCTACTCGGCCTTCT
TCTCTGCCCTGCCCTCTTCTCAGGGAACATTCCTATCCTGGCCATTGATTCGATCAGTTTGAGAA
CGAAAGAAGAAAGCAATCCTCGCATACGTTTAAATACGATATATT
Right flanking sequence: Indices 392511 -- 393010
CCGGAAACCCTGACTTCATTCTGACACGGACTTAACCATGCCCTACTACCGAACCTATCTCTAGC
TTCTGGATACGAAGACAGAAAGAGAACCCATTTGTCTTTAAGAGAAACGCTTCAAAGCGGAAAGA
GTGGGGAAGTGGAGTTGCCACGACGATCTAGATGGAAGTTTCCAGATTTCAAGGTAAGAAGTCGA
GCCAGACTCTTTGCTAAAGCAATTAATTGGTTTTTACAACCTGGCCTCCGCAAGCTAAAGGAATG
ATACAGGAGACGATTAAGTGGATACTCTACTTCCACCGAAAACCATGGATACCTTGCCACTACCA
CTACTTCCGCCGACAACCTAGTTTGATCCATTCCTGAAGCAGATGCAGGATGCAGAAAGGATGCT
CTATAGATGCACTCGAAGGAGGCACTTTATATCATACTAGGTCAAGCGATTCGTGCACTCGATCC
TGGTCGATTGGTTGGGATAGCAGACTTCCTAGTTGGCAAAGTCCT
Found at i:397225 original size:6 final size:6
Alignment explanation
Indices: 397205--397249 Score: 81
Period size: 6 Copynumber: 7.3 Consensus size: 6
397195 CCACGCACGT
397205 TATTAG TAGTTAG TATTAG TATTAG TATTAG TATTAG TATTAG TA
1 TATTAG TA-TTAG TATTAG TATTAG TATTAG TATTAG TATTAG TA
397250 AAGGAAAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 32 0.84
7 6 0.16
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (6 bp):
TATTAG
Left flanking sequence: Indices 396705 -- 397204
CGCGAAAGTCCCATCATCGTTGGGTGGCATCTGGGATCTGATATGTGGGGGTCAGAGTGAGAAGA
TGGTTTTGGCCACGGAGTTTAGTTCGGAAGAATCCTAGTTTATTTTTTTTTTATGGAACACCCGC
TTGCTAACTGACTTTTGTCAAGCCCGTCTCCACGAGATCTATTTTCATCCGAGGGAGGGGCAACG
TCCCAAAGCTGGACTTCCCGCTGGAAGCTCCCTATTCTGAGTGGTTGATAAGCCTGCTCATACGA
GAAGAGCCCTAGTTTTTTCGGAACCACACAATTGAGAGTGGCCCGATGCACCGGAGCCGTGTGAC
CAGCCACGAACAATCGATGCGTCTGCCAAACTACTTCAAAAAGGAAAACACGAGCTAAACCAGTA
AGTAGTTGCTTTGCTTTGGACTGTGATTTCGTAAGCGAATTGCTTTAACACTCCTCTTTCAATCA
AAGTTTTGGCAGACCAAAAAATAAAACTCGTTATTCCACGCACGT
Right flanking sequence: Indices 397250 -- 397749
AAGGAAAGAAAAAAAAATAGCAATCGAGTAGTTCAAACGAGTATAGATTTCTACAGGTAGACATC
AGGTTAGTAGAACAGATAGACAACGAACAAGTAAGGGGGCAATGCTTACTCCCACTTAAACTTCT
CCAACAATGCCGAGGATACCTTCTACCCTTTCAATTCTATTACCAATAGACAGCCCTTACGTTTA
TTTTGCGCGGATTGGGGACCTTAAGCTACGCAATTTCACTCTTTAGGGTAGGGATTCTGGAGACG
AAGCATAATCTAGAGACGAAGCAGACACCACAAAACCATCTTCAGGTTCGAACCCAACTACGGAA
AGTAGAAATCTCCATTCCTACACTAATTCGGCTCTTTTCTTGTCTCCGGACCTGTGAAAAACCAC
ACTCGTACCAACACCCACGGAGAACGTTGCACCTCTTAAGATATTACCCAAAACCAGGCATATTC
TCATATGCTTCACAACAACTAACGTTTATAACCAACAACAACTAC
Found at i:401527 original size:7 final size:7
Alignment explanation
Indices: 401515--401542 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
401505 TATTTACTTA
401515 CTTGAAT
1 CTTGAAT
401522 CTTGAAT
1 CTTGAAT
401529 CTTGAAT
1 CTTGAAT
401536 CTTGAAT
1 CTTGAAT
401543 TTAAAATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (7 bp):
CTTGAAT
Left flanking sequence: Indices 401015 -- 401514
TACAAAGAGGTGTGTTAGAGATGCGGTTTAGCTTGCTAAAAACCAACCTTGGGTGATAGAGGGGG
AGTTCTATTCAGGATGCCCAAGTGGGGTTTCGATTTCAGAGAGCAGGGTGCTGAGCCGAAGACTT
CCGTATTGAACGAGACGAAGGCACCGCCTGCCTCTCATTGCCAGGAGATAAAGAAGAAAGGAGCA
TGTTGAAAGGGTTTTATGCCACGGATACCACCCCTATGTCTGTTGGGGATTTGACTCCCGAATCA
CTATCTTTTCAGTGCCCGGAAACCTTTAATCGGTACAAGAGATTCTCTCGATTCGCTCATGTGCA
AAAGAAAGAATTCTCCTGAATTCAGCTAAACCATTCTTTTTAAGACAACCCACTGGAACTCGTAA
TAGAGAAAATAAGGGCCACTTTGCCTCATTCTACAGTTAAGCTTTCACCTGGATCCGTTCTCTGG
ATCTACTACTTTCTTTGGTTGTTGAAAAAAACGACTATTTACTTA
Right flanking sequence: Indices 401543 -- 402042
TTAAAATTAGAATCAATTCCATTTCTTTCAGAATTTATGAATAAAGGAATGCAGTGCAGTAGTTC
TATACTACTCTTACTATTACTATATGATATGATAATCTGGATGAGACTGATAGGCAACAGAGCAA
TAGGCATAGCCGACACGAGTACTGATAAAGGCAAGGCTCTCGCATGAACCTAGGAAAGGTTGCTG
TAAGGATTGTGATCCACCGGAAGAAGAGAGTATTTCACTAGAGGGCGAGACTCCTAATCCAGTAC
GGGGAAGGAAAATGCTCAGTTTCATTCGAATTGGATAAGCCTCAGCGCCAAGCGCTGGTGAACAA
GCAAAAGTACTAATAAATAGGTAAATAACACAGAGCTGGATAGCCCAGAGATGGTATGGAACCTC
AATTTCTTCATTCAAGGAAATAGGGAAGGACCAAGGACGGTGCACACTCTTCACCGATAGCCGCC
AAAGTGCCCTATGTCTCGCGAAGAACCCGGGTGGAAGTGAATTCT
Found at i:411091 original size:5 final size:5
Alignment explanation
Indices: 411081--411212 Score: 264
Period size: 5 Copynumber: 26.4 Consensus size: 5
411071 CGCTTTCTCC
411081 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
411131 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
411181 TATAG TATAG TATAG TATAG TATAG TATAG TA
1 TATAG TATAG TATAG TATAG TATAG TATAG TA
411213 CCCACGGTCC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 127 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 410581 -- 411080
GCTTAGCTTCCCCGAGGGAAAAAGACGAAAACGCCGGCAAATGACAGAGCTAGAACGGCAACCAA
GCAAGTGCCACTAAAGCGCGTTAGCTAGAATTGAGACGCCTTTCAATTCAAACACATTCTGAAAT
GGCAGGATTCTCACCTGAGAAAAAGAGTGTTGTCACTACTGCAATTGCCGAGTCTGTCTGGGAAT
GCTTACCTGACTTCTAAACCGGACCCAACAGGAGGATGCGCTAGAGGGATAATAGGATGTCACAC
ATAAGCCTGCCGACTAAACGAGCTGTTCTGGACAGGTTTGGAATCCCTGTTTTGAAAAGGATTAC
GCCGATCCGATCCTTGAAATACTTAGATCCCGGCTTTTGAAGAGAGAAGCACTTGAGAAATGTTT
TTGAGTTCGAGCACTAGTGAAAATGCATCTGAGAAATGTCGTGTCGTAATCGTATATCGAGTAGT
TCCGGATTGGCCTATTCCCAGAACCAGAATGAATACGCTTTCTCC
Right flanking sequence: Indices 411213 -- 411712
CCCACGGTCCATTTGATCATTTGCTGCGGTACCAAAGTTCAATCGTCATCTTCAGTTGAAAGAGT
ACACATTATATTGAGTACCTCCCTATCTTCGATCTCTCTTGTAAGAAATCCTACGCATCCCTCCC
TTGTCAGAAAATAAATAGGAATATGAGCCTGTACTCACTCACGCTGCCGGAGTACTTTTTGAGTT
GAGGGTAACGTAGTAAAAATCCTTTATTTCTGGGGATTTGCCTTTTCTTTCAAAATGAATTTATG
CTTAGTCTAAAATTGGTAAATACCAAATAATAATAATATAAAGATATAATATATATTATTATTAT
TATAAATATGTACCAGTTTCCTGAAACTAACAAATAGAGTTATAGCTTTGATTGACTTACTAGCT
TACGGGAATGCTTTGAATCTCAACTTACTTTTTTAGAGGGGGGGATTACTACTGCATGGAAGGAT
GGTATACTGGAACGCAGGTGTTCTTACTCTTTCTCAGGTACCTGA
Found at i:418510 original size:6 final size:6
Alignment explanation
Indices: 418499--418590 Score: 184
Period size: 6 Copynumber: 15.3 Consensus size: 6
418489 AAAGCCTCTG
418499 TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT
1 TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT
418547 TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TA
1 TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TAACCT TA
418591 GTATTGAAAA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 86 1.00
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.34
Consensus pattern (6 bp):
TAACCT
Left flanking sequence: Indices 417999 -- 418498
ATCTTGGTTCTGTGTGATAGGCAAGTCACTTTGAGCAGGCATGTTACGAAGCAGGGTGAACTAAG
CCCAAGGTCAGTAAGGCGTAAAGTAAGTGCGAACCCGAAGCGTGGGTAGAGTGGTAAAGAAGCGT
AAAGCTGTGTTGGTTCGATCGAAACATAGAATCCGCTTTCTTGGTTGCCTCCTAGTGGTTTCGCC
AACGAGAACGCAGGAAGAGAAAGGCTTTTTCAGTTTCTGCTTTCTTTTATCCAACTGCGATTCAG
TATAAGAATACCAAGCCAAGCGATAACGTTACACTCCTAACTCGTATCGAAGAAAGCCAAACTGC
TAGTGCTGAAACAAATCACAGACACTCCGCCCCGAAAGGAAACTAGTGAAACCGTCGCGCATAGG
GTAAGTAAGCAAAGCCTATTGGAAAGAAAAAGACACCATGGTTCCTGGCCCTTCTTTCTTTATTG
CAAGCAAGCGCTTTGGAATCTGAGTACTCAACTCAAAAGCCTCTG
Right flanking sequence: Indices 418591 -- 419090
GTATTGAAAATAGCTGGTTGCGTTGAAAAGGCGCGGAGCGATAGATAAAATGGAATCTGTCTCAA
TGCCCAGCTGATTGTCCACCTCATTAGAAACAATCCATCCTTGCGCTAAGAGCTTTGTATACCAG
TCGGCCTAGGTTCTTCCTGCTAAGTCAAGTGCTTTCTCTTTTATACCAGTTGAAATAAGAGTGAA
AGCTTGCAATTGGGTTCGAGCTTCTACTTCTACAGTATGAATTTGACCTTGAAGGTTGCATTCTA
GCTCTCAGGTTTCAAGTAGCTTCTTTCTGTAGTTTCCGTAGTTTTAGGCGAGTTCCTTCTTGTCC
TATCACTCGTATCAGCTGTAGAATTCTCTCTATCAGCTGCCAAGATTTCCTTCTACTTATAAGAT
AAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGAT
AAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGAT
Found at i:418984 original size:5 final size:5
Alignment explanation
Indices: 418974--419135 Score: 315
Period size: 5 Copynumber: 32.2 Consensus size: 5
418964 CCTTCTACTT
418974 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG
1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG
419024 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG
1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG
419074 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG
1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG
419124 ATAAAG ATAAG A
1 AT-AAG ATAAG A
419136 CTCAAAGTCA
Statistics
Matches: 156, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
5 151 0.97
6 5 0.03
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
ATAAG
Left flanking sequence: Indices 418474 -- 418973
TGAGTACTCAACTCAAAAGCCTCTGTAACCTTAACCTTAACCTTAACCTTAACCTTAACCTTAAC
CTTAACCTTAACCTTAACCTTAACCTTAACCTTAACCTTAACCTTAACCTTAGTATTGAAAATAG
CTGGTTGCGTTGAAAAGGCGCGGAGCGATAGATAAAATGGAATCTGTCTCAATGCCCAGCTGATT
GTCCACCTCATTAGAAACAATCCATCCTTGCGCTAAGAGCTTTGTATACCAGTCGGCCTAGGTTC
TTCCTGCTAAGTCAAGTGCTTTCTCTTTTATACCAGTTGAAATAAGAGTGAAAGCTTGCAATTGG
GTTCGAGCTTCTACTTCTACAGTATGAATTTGACCTTGAAGGTTGCATTCTAGCTCTCAGGTTTC
AAGTAGCTTCTTTCTGTAGTTTCCGTAGTTTTAGGCGAGTTCCTTCTTGTCCTATCACTCGTATC
AGCTGTAGAATTCTCTCTATCAGCTGCCAAGATTTCCTTCTACTT
Right flanking sequence: Indices 419136 -- 419635
CTCAAAGTCAGATACCAGATTGATAATAGCAAATAAGAATTTACGTTGTTCTATTGCAAAGTAGT
CTCCTACATATAAAAAGTAGTTAGCAGATTTCAAGTAAGGAATAAGAATAGTAGTTTATGCTTTC
GTATCTCGCCTTTAAGACTTGCAAGCCGGAGTTAAGAGATAGAAAGCAGTTGGAGTTTCCTATGG
AGTTGTAGTTTCCTAAAAATAGTATTACCAAGTCAGATAGAAGAATCACTGCTATCAGAAGTCGT
AACTCTTGTTTTTCGCTTATAAGCTTTAAAGTACCGTAGTTGTATACCAAGTCTGCCAGCCAACT
ATCTGATTTCAAGTCGCTTATAGCCGTCCTCAAGTGAAGAAAGCCAGCGGTGAGGAATAAGAGTA
AACCTTTTAGAAAGCAGTTGGTGTTTCGATAGCATTACCTGGAGTATTAGTAGCTCGGGTCAGTA
TTAAGAAACGGAAAAACCAGAAAGAAGTTTTCAAAGCCTTAAGCT
Found at i:422739 original size:5 final size:5
Alignment explanation
Indices: 422729--422835 Score: 214
Period size: 5 Copynumber: 21.4 Consensus size: 5
422719 TCGAGTTCCT
422729 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
422779 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
422829 TACTA TA
1 TACTA TA
422836 GTTTGGTAAT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 102 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 422229 -- 422728
TATTCTCTCTGGAATAGAGTGATGTATGCGAAGGTAGACAGTTCTCCGTCCAATCGTTTCTTTAT
AACATGGAAATTCTTTAATCGATGGAAAGTAGATAATATTGGACCCTTTCTCATATCAATAAGGA
TGCTCGGGTCGAGGAGAGGTTTCCACCTAGCCGCCTTTGGTCGCGGTTCTATTCGAGTAATTCTT
AGGGACCGATTTCAGGCAAGCAAAGATGAATGAATGAACCCCACTTCGAACATGCTCAAAAGCAT
CCATATGAATTACCTCCCTGGGCATCTAGCAGTGCCAACGCGAGGACTCCTCAACGAGGAACAGC
TTCCATATCGAGATAAACACAAGCAGGCCAAGTTGGAAACAAAGATCTCTACGAAACAGATGAAT
TCTAGAAATCCCAACACTCTTCCCGGCATCCTACAGAAGTAGGCGACCCGATACTGGCTTTTGAG
TCTGAATGCTGTCGAAAAAAGTCGTTATCTCTCGATCGAGTTCCT
Right flanking sequence: Indices 422836 -- 423335
GTTTGGTAATATAAATTAGTCTCTCTATCCTTTACCAAAGCATGGTGCGTCTCTCCCCATCCCCA
AGTGTTCCTATAGAAAATCCCTCCCGCCCCCGTGGGGGGGATTTCCTATGGGAGTGGGGATCTAT
CTCTTTAGCTCACCTCACACTGAATTCCAGGGAAAGATTGGACATCCTCGGATTACTAAGATGAA
TGAACTCTACTCTCGTATCGTCTCTACTCGGATCTATCTGGAGAATGGCATGGCCTGTACAGTTG
CGAAAAAGCCCACATCTGTCCCGAAGGGTCATTATTGACCAGGAATTCCGAATAAAGAGATTATT
ATTCCCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGACACC
GCTCTATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTACCAT
TCTGTGGAAATGAAATACAGCTAACACTGTCTTCTGATCTTCGGG
Found at i:423703 original size:18 final size:18
Alignment explanation
Indices: 423656--423715 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
423646 GTTAGTAGTT
423656 ACTCATGAATTATACGTG
1 ACTCATGAATTATACGTG
* ** *
423674 ACTCGTTCATTATACGTT
1 ACTCATGAATTATACGTG
*
423692 CCTCATGAATTAGT-CGTG
1 ACTCATGAATTA-TACGTG
423710 ACTCAT
1 ACTCAT
423716 TTGTTCCGAA
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
18 30 0.97
19 1 0.03
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (18 bp):
ACTCATGAATTATACGTG
Left flanking sequence: Indices 423156 -- 423655
TTATTATTCCCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACG
ACACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTT
ACCATTCTGTGGAAATGAAATACAGCTAACACTGTCTTCTGATCTTCGGGCAGTCCAATCTCATC
AAGAGTAGACAATCATATCAACTCCGATATTACACACTTAAAATGCTTCTCCCAAGCCCAAGTCA
ACCCCAACAATTCCAAGAAAGCGTATCTCCTATCCGGGACAAGCCTTGCTTTGGGAATATAGAGG
AGTTCACACCCAGTCCAGACTTCACTGTATCTTTCGTTTTAGGCCAGTCCAATGATATGATACGA
TACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAGTCAAGTACCCCTCGCTAATCCAATGAG
GAACTACCGGTTATATTCGTCTTTCTATTCGTAACGTTAGTAGTT
Right flanking sequence: Indices 423716 -- 424215
TTGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCCCT
CACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATACT
TGCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAAAGGA
AGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCAATTCTAAAGTACCTGTCAACG
GGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTTAACTGAATGCCG
ATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACGTTTAAAAAACTA
TGAATTTGACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTACAGCAAGGAACCT
GAGAAGAGACCCGAGGAACCCTGTAGGTAGATAGTTTTCAAGTGC
Found at i:424828 original size:5 final size:5
Alignment explanation
Indices: 424818--424849 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
424808 CTAAATACTT
424818 ACTAA ACTAA ACTAA ACTAA ACTAA ACTAA AC
1 ACTAA ACTAA ACTAA ACTAA ACTAA ACTAA AC
424850 AAAGTAGTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (5 bp):
ACTAA
Left flanking sequence: Indices 424318 -- 424817
AATCTCTTCTCTGCGGTTCTGGGGAAGCGGTTGTATGTCTGGGTCCTGGGCCAAGTAGATTGATC
GTTTGTTTGATATTCCCGCTGGAATATTTTCCAAGAAGGAATCCGGGGATGTCCATGATTTGAGT
GATATTGGCGCTCCACTTTCATATGGGATCTCTTTCGTATTGGATGTGGATGGGTCTAGAGAATG
GCATGGCCTGTACTTGTTGTGAGGAAGCCCACCTGTTGCGAAGAATAGGATCCATCCCGTTGTCA
AAGAAGAGGTTGCTTGTCAAAGAAGAGGCTGGTATCGGCTTTCCCTAGTGCTCCCTGGCAATATT
TCCACAAGATGCCCGTATACAGATTTGAAAGAATTTCATGAATGAGATCATTTCTGTTGCGAGGA
ATGCCATTGGCAGTCAACTCTTGACTCGTATCTTGAGAATGGACGCTGGCCTAAACCCCTCTTTG
GAGTAGGCCTACCTTTCTAATCTAACAAGTGAATACTAAATACTT
Right flanking sequence: Indices 424850 -- 425349
AAAGTAGTAGATTTCTTCCGTCACAGCTCTGCAGCTGTCCCTCACCAATGTCAAAGATAGGCCAC
GGATTACATTCAAGGGATATCTTGCTAGGAGAAGTCTGTACAAGCTTGTTAGCCAGATCGAGATG
TGGTTCTGTTGGGAATCCAATCTCCTGTCCGAGGAATAGAATCTCTTGCGAGGAATGGCTAGCTC
GATCCATCTTGTGGAATACCCCAAGTATCATATCATAGTCATAGCATTGGAGCTCGTATCGTATC
GGAACACTTGTATCTCGTATCAACGGAGTCAAGCATCTAATCTATATTCTACTCTTCTACTCTAG
AGATTGGGCCTGTACGAAGATCTTTCTTTTTGCGGGCTAAAGATCACTCTTGTCCCTCCAGTGAA
GTGGTAGTTTTCTTGCTTATAGAACAGAACTGAGTCTCTTATGTTCGTAACATACATTAAGTGTT
ACTCACTCCATTGGCATCTACAAGTGGTGCTTACGAGAGAGGCCT
Found at i:438043 original size:6 final size:6
Alignment explanation
Indices: 438032--438061 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
438022 ATTTCTCACT
438032 CTGAAA CTGAAA CTGAAA CTGAAA CTGAAA
1 CTGAAA CTGAAA CTGAAA CTGAAA CTGAAA
438062 TAAGTAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
CTGAAA
Left flanking sequence: Indices 437532 -- 438031
ATCTTCAAAAGCCCAGGTTGGCTTTCCCACTTCCAAATCCGTAATAGTAAAGTAAGAGTAAGGTG
CGGATAGCGGACAATTTCCATAATAGATAGCTAAAGTGCTTAATCCTGAGAAGATGGGAGACGTC
GATTGTTAGAGTACTCTTGACAAGTGCATTTCTCAAATTCTAGCCAACAGATTGAAAGCATGCCT
GCCTGTTTGTTCTTTTCAGTTCCAATCAACCTTCTTTTTCTTTTTGAATCCAAGCAAGAGGATGC
GCCGCAACTAGCGCTAGTTGCTCAATCCGTTGCTTGTTTGGTAAGATTACCTTGATAAGTCTCAG
GGACTGAGTGAACTGAATGTATAGCGTCAAGATAAGAAGCACGGTAGTCGAAGATGTACCTTGTG
GGGTGGGGTACGAGTAGACCAGACAAATGATGAAAAGCATAGATACGAGCATGGCCTCCCTGTCT
CAAAAAGCAGGCCACCAAGGGTGTTCGCATGAAGCATTTCTCACT
Right flanking sequence: Indices 438062 -- 438561
TAAGTAGTTATCACAAATTTAGAAACATGCTCTCTCTTATCGAATTTCATTCAGATTTTCCTGTA
TTCGGAGTTGCTTGGGAAAAGGTCTAGTCAGGGTCGGTTCTGTTCGGGGTTGCGGCTTGATCGGG
TTGTCTGTACACCCAAATTAATAGTTTTGTATAGTTTGTGTCAACCTGAGTTTGGTTAAGTGCCC
GCCCGCCTAGATAGATACATAAGTGTCTGTTTGGAAGAAGAAATGAGGAGCTACTAGCCGATCAC
GAAATAGGCTCAGTCGTGGTCCCTACTGCTTATGGGACTGTGACCGAATCTGCTCGGAAAAACTG
GTAGATGAAATGGGAATTTATATGGAAGCGCACGAGGGGATGCTAAGACGGGGCGAAGGAAGGGA
TTACAGACCGGGCTTTCGAGTAGCGGGATTTGAGACCTGAAGTCAGATATTGCACTAGAAATGGA
ATAGAGGAGGAAGAGGTGACTGCTAGGTAGGCAGTAGTAGCGCAT
Found at i:439086 original size:5 final size:5
Alignment explanation
Indices: 439076--439110 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
439066 CCTCTACTTT
439076 ACGAA ACGAA ACGAA ACGAA ACGAA ACGAA ACGAA
1 ACGAA ACGAA ACGAA ACGAA ACGAA ACGAA ACGAA
439111 GGAAAATAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.60, C:0.20, G:0.20, T:0.00
Consensus pattern (5 bp):
ACGAA
Left flanking sequence: Indices 438576 -- 439075
CAAGGTTGTTCGACAAAGCACATTAGCAAAGGTAGTTATTTCAGTAACTTTATCTGGTTTCAATC
CTTCCGTTACGAGATATCCTTTCGTACAACGGTAAGGTTTTCCTCGGCAACCCCTAGGCCAATAT
GACTACGAGACGAGCAAACGCTATTGATATACCTATCCGAAAAGTATCGCGATATCCAGTCCTAG
AACTGCCCTATCCCTAAGCTGCTCCCAGACTACTAGGAATGGCGAATGGAAAGATTGAGGCTAAC
GCTGGAGCGAGTACTCCCCTGAGCACCTGACCCCTTCCTTATCGGTATCCCTAATCGAATCCTAC
AGGGCAAAGGTATCTTTTGTTTCCTTTAGAACAATCCTAATCGCATATCCAAACCAAAGAAGATG
ATATTTATTTGAGAAAGCGCATTCTATTATCGTATTGCGACACTGCTCCTATCCCTAACGCTAGC
TCTGTTGACTTCATTCCTTGTCGGTGTTGCGAGCCCCTCTACTTT
Right flanking sequence: Indices 439111 -- 439610
GGAAAATAGCAATGGAATGGAATAATGCTATCCGTACGCTATTGATATTCCTAGCGCTATCCCTT
TTCTTTGCAAAGAAGCCCCTTCCCTTAATAAATTGAAAACATCATAAGGCTTTACTCAAAAAAGT
AAGATTTGGCTCGGGTGCATCAAAACTTGCAACCCTCAGAGTATCCTGATATTGATGAGGTGGCC
TTTTGCACACCTTTGCCCTTTTTCTTTCGCCCTTTAACCCGGAAGAAGAACGAAGAGGATCTTGT
CCAAAAGATGATGTCGGATATTTAAGTGATGCCAAAAAGCGCTAGCTTCTAGTCTAAGTCTGAAA
AAAAAGGAAGGGAGAATGAAAATTAGATGGAATCATCGCTTTCATAAAAAGTAAATCAAAAGAAA
TAATATTGAAATTATCCTTTGCCGAACCACATTCCTTGCCGGGATCAATCAGCAGGCTAATGCAA
TCAGAGGTGGGTGGGAGTGAAGTAGGTTTCGCGAGCATACACCCA
Found at i:445034 original size:24 final size:24
Alignment explanation
Indices: 445007--445056 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
444997 GCTTCTAATG
445007 GAAGCGGGGGAGGGATCCACCCAA
1 GAAGCGGGGGAGGGATCCACCCAA
445031 GAAGCGGGGGAGGGATCCACCCAA
1 GAAGCGGGGGAGGGATCCACCCAA
445055 GA
1 GA
445057 GGGGCGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.42, T:0.04
Consensus pattern (24 bp):
GAAGCGGGGGAGGGATCCACCCAA
Left flanking sequence: Indices 444507 -- 445006
ATAAAAGATTCACTTTTACCATCCCAGCGAATGATCCTTTACGGCTGCTCGTATATCTATTTCGT
AATTCGATCACGAAAACTGTGATTCTTGAACGGCAAAAAAGAACAGCAATCAACGGGCCGAGAGC
GGGAGCACGAGGAGCGAGTACCCTGAAGGGTATTCGCACCTACTCTGCCGCCTCTCCTAAGCATT
GGAATTGGAAGAAGAAGTTTTTTCGCTTCAAAAATTGGAATCGTAAATTTTGTTTGATGCTTCTG
CTTCCTGCCTCGTGTTGGTTGCAATGGTATTTTGGCTTTTTTGATCTCGCGGAACTCTTTACGGT
GCTCCTGAAGGATCTCAGTGAGGTACTCGTAGGGTGGCTGGCTTGTCTATTTCAGTGCCTTTGGG
AAACATTTCAGGGCGGCCAGAGTGCTACTCTGGGGATGCCCCAAGGAGAAAGTGGGGGTTCTTCC
GATAAACTGCCTTCAAAGGTGGGGGGGCAAAAACCGCTTCTAATG
Right flanking sequence: Indices 445057 -- 445556
GGGGCGCAAAGGAAAGGCTCCTTTAGATTTAGATTTTGAAAGGGAGGTTCGGTCCGCCCCATATT
TTATAGATCCGCCACTCAGCCCTACGGAGGGCGAACGGTTGAGCCCAACCACTGGCCCTTCGCCA
GAAGGGGGTGATCATCCCCATGACAACACGCCACCGGTGGCGGTGGAACCGGCCCCACTTCCTGA
GACAAATCCGACTCGGGCGGAGGGTTCCTTAAAACGGAAGGAACATCCATATGTAGAGGATATGA
ATAAAAAGTATGAGGATTACCTAAAAAGAGTACAGGCCCGAGAGGACGACAAGGAGTGGGCGGAT
ATTATTTCAGGAATAGAAACCGCCAAGGACAAGAAAAATGAGATTGATCTCAAAAAGCGAGGCAT
TGCGTCTCAAATTTTAGAGGAAAACCACGATTTAGATCGTATGTGTCGTGAAATTTTTAGGCAAA
GAATGCCCTTGATGATTTTGCAAAACAAATCTGGTCGCGAGGATA
Found at i:448672 original size:5 final size:5
Alignment explanation
Indices: 448662--448690 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
448652 GCTTTACTAT
448662 ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATAT
448691 TCCTTTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATATG
Left flanking sequence: Indices 448162 -- 448661
GCTTTAGTACAGACATCCCCGGTGATGAACTCGCTACCTACTTGAACATCCCATTTACTTTCCTT
TTCTCTCTGCCAACCTCTTTGGCTGAGCCAGCGTAGGCTTATTCAAGTAGTTTTTCTTTACTATA
ATATAAGCCCCACCTATTACTTCTGCTAATCTTGGATTGCCGAGCCGAACAGACACTGTACCTAC
CTCAGCCAGGATTTTGGACAGCAAAAGATGGCCAGGATGTCACACATTAGGAGGGATAGGCTCCG
CTGAAATAGCCACTCGGGACAATCAAACTTGACACGGTTGCTTTGCTTTAGCTATAACAGGAGGA
ATAGCCTTCATCTAGAGTGAAATCATTATTAGATAGGATATTCTTTGAATTCACATAGAAAAGTC
TAGTCTACTGAATAAATGATACTGAAAGCAAGACGTAGGCGTTGGCAAAGGAATTTGCCTTTACT
ATACTATACTATAACGCACACGTTTCATTATTGTTGCTTTACTAT
Right flanking sequence: Indices 448691 -- 449190
TCCTTTTATCATGAATTGGATTGGAACCAAGGAAGTTTTATAGCTTATTGAATTTTGGGGAAAGA
ATCACTCTCACTTATAGGCTTACTAGTTCCCGTAGTTCCACTACACAGTTCATCAGTTGGAAATA
GAGTCCTATTGCTTTAGTAGGGGTTGTAAGATCACACCTGAAACTTTGGTTGTAATCCCTGGGGC
ATTTAACCTTGTTTTTCCCTTGTGAGCCGCCTATGTAAATCCACGATCTTTAGGCAAATTTGAAT
CAATCATCGCTCCAGTGAGTAACGTATTTTTTGGACTTGTAATAATAGCCTTGTCCAGTAGCGAA
GTACTAACTTCTTTACTTTGCTTGCCCTGTCCGCCTTTCAGGAAGCCTACTTGGCGATGAACAAG
ACTTTGAAGGTCGAGTAAACTATTCGAAGGATCGCCGATTCAGTCCTCTTTTTTGATGTTGTAGA
GTACAAGTCCGTAACTGGTCTTTTCTTTGGGAATGGTAACCTTAC
Found at i:456187 original size:39 final size:39
Alignment explanation
Indices: 456138--456217 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
456128 ATATCTATTG
456138 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
1 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
456177 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
1 GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
456216 GT
1 GT
456218 CTTTATGAGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (39 bp):
GTTTCTCAAGATAAATAGAAATGCTTCTTCTAATCCATC
Left flanking sequence: Indices 455638 -- 456137
GTGCTTGCTTATTAGATTAGCTATTCCTATCCACGCTAAAGAAACAGGAATCAGGAAGTTGTTTC
TTTCATTTATACCTATGATATCCACGCTAAAGATGAGGGCCTTCTTTTCCAGTTCATATCAGCTA
TCCCATCTCTTTCTTGCTCGGTGAAAGGAATATCACTATCCCATATATATATCTATTTCAAGAAA
TATCACTATCCCATCTCTTCTATTAGTTCTAGTTACTGACCCTCGAATACTGTGCTTTCTTAGCT
AGCTATTATGCATAAACCAGTGCTGCTAAAACAGCTACTCCTTACTTCTATTGGACAAATCTGCC
CTAAGCCTAGTTACCTTTAGATTCCACACCATTCTGAGATATAGCTGCCATAACCCGACTACTCT
TTACTTACCTACCTTGCATCTCTAACCCGTCCCACTCCCTGCCATCCAGGGATTCCAAGGGTCAT
AGCGTACTCTCAATTCAAAACGAGATACCCTTTCTATATCTATTG
Right flanking sequence: Indices 456218 -- 456717
CTTTATGAGCTGGCAAGGACTTTAGAATCTATAAAAGCAGAATTTTCAAATAAACGCGCGTTCAG
TTCCAGTTGTCATGGATAAACATAGATTTCTTCTTTTCAGGAGTTGTGCTGGTTTTGGAAAGCGA
GCTTACCTTGTTTGTCAAGGATTGCTTGTGAAATTCTCCGGCTGGTCGAGACCTGTACCTTGGTC
AGAGTGATACCAGTGCCGTGCTAGCTAGTACATATTGGTCCCAGACCACAAAACCCGGCATGGTA
ACAAGGCATTTCCTTTTTTCACGTCGAAATAAACCACTGAGAACCTGGGCTGACCAAGAAAAAGA
AATGGTAACAGGCCTCAACACTAAAGGAGGACCAGTCAATACATGACTAAGCCCCAGTGACGAGT
TCACCACCAAGCGGTAATTTCTAAAACAATAGAGCGATAGATGAGCACACGTCAAAGAAGAATGA
AGGGGGACATACATACCTAAATAAAAAAGGAAGTTCCAATGGAAC
Found at i:460144 original size:5 final size:5
Alignment explanation
Indices: 460134--460193 Score: 113
Period size: 5 Copynumber: 12.2 Consensus size: 5
460124 TCTAGGAACC
460134 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
460184 TATAG -ATAG T
1 TATAG TATAG T
460194 TTCTTTTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.07
5 50 0.93
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 459634 -- 460133
GGAACCATTCTTTTCCCGGTTCCCATTAGAATAGCATTCCTTCCATTCTGCCAACCAACCATATC
TCTTATCCGCTCTTTTAGAACCAATTTCCATCTTTCCACTGACAGCTGCGAAGAGCTCCCCTTCA
CTAGGGCCAACATCCCAGAGGCTATGCTATTTGTTCAACTCTCTCGCGCGGGGCGAATAAAGCTT
TTTCAAAAAGAAAAGAATAGACAAATCAAAAATAAAACTAGCTATGGGCATTAGGTATAATAGAA
AGGAAGCTTGGAATGTTCAATCAAAGAAATGAAAACAAATACTTAGGCTTAGGCAGAAGCAGACT
GCCGATTCTAACCTTTCTTTATTAGGAGGCTCGGGAAAACTGGGCTTTCTGATAACTAATCACTG
GAAGCACCCGATTCTCTCTACTCTGCACTTGGCCGGGATACCGAACTTAGGTGGGAACTTTTGCT
ATTGTTCAGTGAAGATTTTCTATTTATTTGATGAGTCTAGGAACC
Right flanking sequence: Indices 460194 -- 460693
TTCTTTTTTTAGTGAAAAGTCCGTGTCATTCTTTCTTTTTCTTACTAGGTTGTTTATCGAATCAG
AGTCTTTCTCTTTGTAAGCTACTGGTTCAGATCATGATAGGAAGGGCGGCCTTTGTCTTGTTCAT
TTAGTGAATACTCAATAGCTGCCCGCTTTTGGTACTTAGCCCTAGCTTAGGAAATTGCCCCGGCT
TTCGATGCCGACTATTTCAGAAACAGAAGCGGATGGATGGTGCTCTTTCGTAACTGACGACCTGC
CTCCTCCTTCCTTGCCCGCCTCAGCGGAAATCTTCCTTATCTTAGAAAGAGTAAAGAAAAAGGCA
CCTAATCAACTGAAGCAGATGCAGGATCCCTCGAAAAAAGTGAAGTGAACTAGCCAGGTAGAACA
GTAAGGTTAGGAAAAGACTCTTTCATGTCAAGGTGAACATAGACAGACAAGGTTAGTTTGTTTTC
CTTCATTCTAAGAGAGAAGACTCGTTGCTGGAACCGAGAGCACTA
Found at i:469103 original size:5 final size:5
Alignment explanation
Indices: 469093--469119 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
469083 CTTTCTACTT
469093 ATGAG ATGAG ATGAG ATGAG ATGAG AT
1 ATGAG ATGAG ATGAG ATGAG ATGAG AT
469120 TTGCACTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.37, T:0.22
Consensus pattern (5 bp):
ATGAG
Left flanking sequence: Indices 468593 -- 469092
AAAAAAAAACGCTGAGAGACACATTGCAAAAAGAATCGCTTATTTCAATGTTGTAAACTAGTGAG
TGGTACAGGAGTTATGTGGTCAGTAACCCTCATCCTAATAGGGACACCTTGATTAGTGAGGTCAA
GAATAGGTTTCTGTGCATCCAAATCTGTAACCCAGTTGATGAATTAAGAAAATGACATCAGGTTG
GATCTGTAAGGGAGTATATGAGCAAGTTTGAAAAAGTAAAGGCCGGACTGGACTGATCTTGGAAA
ACCCTAATCTTACTGAGAAGTTTTTCTTTTCCTCTTTTCTAAGTGGTTTAAAGGAGGAAGTGAAG
TATATGGTCACTGCTCAACACCCTAATAGTGTGAACAAGGCTTATGAACATGCTATGCACTATGA
GTTAGCACTTGAGTCAGCCAGTAAGAAATCTAGAGTGGTACCTATACCTAGGTGCAGAATTCCGA
AAGAGAGAGCGCGGCTCACTTCAAACTACCGCTTTCTTTCTACTT
Right flanking sequence: Indices 469120 -- 469619
TTGCACTAGAAAGACAGAAGTGGAAAGAGACAGAGAGGAGACTAGTAAAGCCAATTTCACCTAAA
AAGCGGAAAATGACACTAACTTCTACTGTGGGCAAGTCATCATTTCCAGAATGGATTCAGTCGTA
GAATGCTGAAGTAGAGCAGTACCAAGGTTCGGTTTTGGGACAGACAGAAAGTTGGATAAGAGGAT
CGTTCTTAGCCCCAGCTACGAGAGAATAATATGCATCTTCCGTCATTTCATTAGACGTTCTTGTT
GGATTTGAACGCGCATCGGATTACTTACCTTCTACAACCTTCTCTCTTTGAATTCATCTCTCAAA
ATAGAAAAGCTTCTTTCTTCTGGATTCAGTGTTCAGATTAGCTTCCTTCTGAAAGCAAGTATACC
GAGCATTCATTCGATGACATCTAGGTCCTAAATCCAAAACCTTAAACACTAGATCACCGGCATAC
CTAGCGTAAAAGAAGAGTTGCTGCCCATTTGCATGTTCCATTGCT
Found at i:475913 original size:6 final size:6
Alignment explanation
Indices: 475904--475969 Score: 132
Period size: 6 Copynumber: 11.0 Consensus size: 6
475894 GTTCTTCTTC
475904 TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA
1 TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA TTAAGA
475952 TTAAGA TTAAGA TTAAGA
1 TTAAGA TTAAGA TTAAGA
475970 AGCAAATAGC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (6 bp):
TTAAGA
Left flanking sequence: Indices 475404 -- 475903
ACGACAGCTTCCCCCTCATTGCCATCGTCGGCCTTCCCCAGCTCCCCTCCTTCGTCGCTTCTGGC
TAAGCATCTTTCGGCGGAGGAAAGGAGGCGACTAGTCGCTTCTGGCGAAGCTGCGAGTTCATGAG
CAAGTGAATGAACGAGCTGCGAGTGAAGTGCAACAGTCGTAAGTAAGGCTCGCCATGTTCCTAAA
AGGAGTGACCATCTTTTCTTCCCTTCTACTGACACTGAGCGAGCAGCAAGCATAGGCAATAGTTT
CCGTAGGGGTGGGGCGCAAGCAAGCGTTTTCAGGCTCCGCTAGCTAGCGTACTCTTCTGCTATCA
ATGAAACCGAAAGAAAAAACCTGTGCCCTTTCGTATAGATCGAGACGCAGTACTTTTTCTTGACT
TCTTCCATACTAGGAAGAATGGAAGGAAATCCTTCGATAACACTTCTTCTTCCTTATTTGAAGAA
ATGATATCCGACGCCCGCTCTTTCATTTCAAAAAAGTTCTTCTTC
Right flanking sequence: Indices 475970 -- 476469
AGCAAATAGCATTTCCTATTGATTTGTCCCCTGGACTAGACCTATGTAGATTCGGAATTATCCGT
CGCTACGCTGTTCCCAAGGACTAGCAAAATCAAAATAGCGAAATTCTTGGGTCATCTCAATGGGT
TCAGAAACCACACGTTTCTCTGGATCATCATAGCGTACTTCCACATATCCACTCAGAGGAAAGTC
TTTTCGTAATGGATGACCCTCGAAACCATAATCAGTTGATATACGGCGTAAATCCGGATGATTGA
TGGAAGAAACACCAGACATATCCCATACTTCTCGCTCCCACCGGCCGGCTGATGGAAATGGACTG
ACTACCGGAGATATTCGTGTTACTTCGTCCGCACTTGTTTGTACACGAATGCGTGAGTTATACCG
AGTACTCAGTAAATTATGGACAACTTCAAATCTTCGTTTTCGAGAGGGATGATCCACTCCGCAAA
TATCGATCGAAACTTGAACCCTTGTATAGGTATGCCATTTTAGAA
Found at i:477149 original size:5 final size:5
Alignment explanation
Indices: 477139--477175 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
477129 TTATGGCCCC
477139 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TT
1 TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TTCTA TT
477176 AGTTTCAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (5 bp):
TTCTA
Left flanking sequence: Indices 476639 -- 477138
TGCTCTAAGCAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCGACCAAGAAAGGCATGGG
AGTGGAGAGGCGGAAGTGAAAGACTGGCTACCAATAAAGATCCCTCACTGCACACTTTCTATAGT
TCTGTATCCAGGATCGGCTGCATGCTCTAGTGTTGAATCGGGTATAGAACCCAGGATGCTTGGTT
ACAATTCCGAATCCGCTAAACCATGTTTGTTTTCTTTTTTTTTCTCGACTGGCTTTGCTTGCTTT
ATCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAGAAATAGAAGCTTTTTCGTGCT
TGCTTGCGAATGGCCTGAATGGAATGAATATTAAGATAAATAAAAGAAAAAAAATAAACCATTGA
GAAAGTTATTCATTCTTATATTAATTTCCTATACTTGACCGAACAACTTCCAATTCCGTTATTTC
AACTACACCAAATGAATTGGTCAAGACTCTCCTGTTTATGGCCCC
Right flanking sequence: Indices 477176 -- 477675
AGTTTCAGATCGAGCGGGCGGGGTTCGAACCCGCGACTTCTGGCGTGACAGACCAGCACTCTACC
CAACTGAGCTAACTTGCAGTTTTTCCAGTCTTCGAGCAATGATGTGAGACATACCTGTTTCCCTT
ACTAGAGCCGAGCGGTTGCCAGGCCCGCGTCCTTCCCCAATTGGCAGGCACGATTGCAGTCCCAT
AAGGTCCTTGACCCCTACCTTTTCTGAGATTCATGGAATCATCACATCACTATATTAATTACGCA
TTTCTCGCTTCCACAAGGAAATGCAACGAAAAAATAGGACGATTACGGAACTTTTTCTGTCAATT
GCTAAAAACAGCAGTTCTAGAAGGGACATAGCCAACCGCATAAACTCTGGTTTGAATGCCCACAG
AGCTACAGGAGGGAGAACCATTCAACGAGAAATGACGATCAACATGGCATATCAGTAACCGTCGT
TGAATCAGTAAGCGGTTCTAGTGCTTGAGTACTAATGAGGGAAAG
Found at i:500449 original size:5 final size:5
Alignment explanation
Indices: 500439--500489 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
500429 ATCATTGGCC
*
500439 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT ATAGT
1 AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT AAAGT
500489 A
1 A
500490 CATCAGATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22
Consensus pattern (5 bp):
AAAGT
Left flanking sequence: Indices 499939 -- 500438
TAGAGGGACGGAAGCTAGCACTGTAGTCTATAGAAGGGGAGATCCTCTACGAGTTATTAAGCGCC
GAAACCATCACTAGCTGATAAATGAACTGAATCCGATAGAAACGGTTAGGAAGAGTCGGGTGGGT
GTTGAATTGGTAGTACTTTATTCTGTCTCCAATAAGACCTTAGCCAATGCAATTTAGCATGGTTA
AGAATGCAGGCCTATTGTTGCTCCTCAATATTATCATATAGAAAGAAACGTAGCGATTCCGTTGC
GTCTTAACCATTCAACTGATGCGGAGAATCGAGTCTATTCAGGAATCATTGCAGCAATTCTTCAA
TCCTAACGAAGTCATTCCGGAGGAATCCAATGAACAACAACGATTACTTAATCTACGGGTCAGCT
TGCGAATTTGCGGCACCGTATCTTATCTATTCTATAGTAGAATCATTACCAAACCAACAAGAAAG
GATAATGTTGCTCCTCAGAAAACGCGTATAATAGTATCATTGGCC
Right flanking sequence: Indices 500490 -- 500989
CATCAGATTGACCCCTACCAATCCTAGGTAGCCCCATCTCTTCTAATCTAAAGAATCCGCAGTCT
TGCGTAAATTCAAGTAGTGTAGTGGTAACAAAAGATTCATCAACCAATGAATTGCATTTCCATTC
TTCGAACCACCTTTCCTAGCTTGTGTGCGGGCAGCCTGTCGTAGTGCATGCACCAGCCTCCATCT
GTCATTTCCCATCCTGAGCAAGTCGATAATGAACTGAACATCCTGCTGTGCCCCAAAATTGCTTC
TATGTCGCGCACAGGCCATATATGGTTATCCCATAGACCTAGCTAGCTTCTTGCCTGCCTATGAG
CTGAAGTGCTGTCCTCAAGGCATATAGCCGTATATATGTATATGTTGGTATTTATCCTTGCTTGT
TTCAAAGCTTTTGCTTCCCACAATTTTACAGAAAGAGCAAAAGTCAGTCCTTACCTACTACATAT
ATGACACCAGCACACATCTACCAGAAAATAAAGGTGGGAATTCCC
Found at i:509922 original size:5 final size:5
Alignment explanation
Indices: 509912--509937 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
509902 TTCAGTCTGT
509912 ATCAA ATCAA ATCAA ATCAA ATCAA A
1 ATCAA ATCAA ATCAA ATCAA ATCAA A
509938 AGTAGTGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
ATCAA
Left flanking sequence: Indices 509412 -- 509911
CTTGAGTTGACCCTCCTATCAAATTGTCTTGAAAAGCGCCTAGCCTAAGCTTGTGTAGAGCCAGA
AAGACGAGAAGGGAGAAAACAATAATAAAGGACAGGAGTGAAGCTACCCGTCGCTTCTTGCATGC
GCGTGCGTGTCTTTCTTTTTGTGTAGAGCCAGATCAAGCTGATATGAATGTTCGAACGAGTAACA
CGAGCTATAGACTACTTAAGTGTTTTTACAGAAAGCGAGTGAATAGTAAGTGTATTCCCGAGAAG
TTCGATAAGTCAAAGTTCACTCTAAAGTGATTGATTTCTTTCGTACTGAATTTCCCATTGCTTTC
ATACGCGAAAGAAAGAGTCGATTATCGATTTGCTAGGCCTAAGGGTGCTTCGAACAAAGGAAATC
CGAAGAAGGTTTTCTTCAATCAATTATGAAGGAAAGTGAGTGATGGCATGAGACACCATGTTCAG
AGCTTCTTCGTTTTTGAATTTGAGCATGCATTTCTTTCAGTCTGT
Right flanking sequence: Indices 509938 -- 510437
AGTAGTGCAGATTCACTTTGAGACGGAATAGTCTCGGTAAAGGAAAGAGGCTATTGCTGAGCATC
TCTATATTGATCTTCGCTTTTACGGACAACCTTTCTTTCTGTAGGTTTAGCCACCGTGTATGGAT
CCCGGAACTTTGAAATGTAGCAGCGGTGTTATGATATAGATTGCCCATGCAGTTTCGTTTGAGCT
GCCGCAAGCAAGTAATTTTGGACGATAGGTTAGGACTTCTCTTATCAAGTTGATTTTGAAGTTTG
GACTTCTGTACGAGCTAAACCTGACTCGCTTTCAATCGTAATTTTTCTTATCAATAATCCAATTC
AGAATTTCGTTTTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCATTGGGAGCA
GTAGATCATTTCTTTGTTGGGAGCCAAGTAGCTCATTTCTGTTGGGATCTGCCGTGATAGAAAAT
CAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGC
Found at i:510347 original size:25 final size:25
Alignment explanation
Indices: 510319--510374 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
510309 TTAGGTGGCA
510319 TTGGGAG-C-AGTAGATCATTTCTTTG
1 TTGGGAGCCAAGTAGATCATTTC--TG
*
510344 TTGGGAGCCAAGTAGCTCATTTCTG
1 TTGGGAGCCAAGTAGATCATTTCTG
510369 TTGGGA
1 TTGGGA
510375 TCTGCCGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (25 bp):
TTGGGAGCCAAGTAGATCATTTCTG
Left flanking sequence: Indices 509819 -- 510318
AATCAATTATGAAGGAAAGTGAGTGATGGCATGAGACACCATGTTCAGAGCTTCTTCGTTTTTGA
ATTTGAGCATGCATTTCTTTCAGTCTGTATCAAATCAAATCAAATCAAATCAAAAGTAGTGCAGA
TTCACTTTGAGACGGAATAGTCTCGGTAAAGGAAAGAGGCTATTGCTGAGCATCTCTATATTGAT
CTTCGCTTTTACGGACAACCTTTCTTTCTGTAGGTTTAGCCACCGTGTATGGATCCCGGAACTTT
GAAATGTAGCAGCGGTGTTATGATATAGATTGCCCATGCAGTTTCGTTTGAGCTGCCGCAAGCAA
GTAATTTTGGACGATAGGTTAGGACTTCTCTTATCAAGTTGATTTTGAAGTTTGGACTTCTGTAC
GAGCTAAACCTGACTCGCTTTCAATCGTAATTTTTCTTATCAATAATCCAATTCAGAATTTCGTT
TTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCA
Right flanking sequence: Indices 510375 -- 510874
TCTGCCGTGATAGAAAATCAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGCTT
ACACAAGTGGTGGATTGGATGGCGGAAGAGAGAAGAGACCCGGTCCCGGTATGAAGCAAGCTAAG
GTTCTCATCTCCCGAAAGAATAGAATGAATGGAACTGTCTCTTCTCTAGCAAGCATCGAAGAAAG
TGTATTCATTCTCGGGTGTAGTGTAGATCGGGGAATAGCTCAGGCTCTGGTTTCAGGTCTTGCAT
GAGGGAAGGTGCCGGGATAAAGGTCGGTTGAAAAGCACGGCTATACTATACGAGTGATTTTTATC
AAGCTAGTGTGTTGGCCGGTTCGCAAGGATTGAGTTGAGTGAACTGGCTTTCCTATCGAATAGAA
GGAAGTGGTGCACGGCGCTTCGGAATGTGAAATAACGTATCAAATCTCCGGGGAAAAACAGTTGA
TGTGAATGAATGAATTGAAATATGCATGCTGCATGCCACCTCGGA
Found at i:511941 original size:5 final size:5
Alignment explanation
Indices: 511931--512041 Score: 222
Period size: 5 Copynumber: 22.2 Consensus size: 5
511921 CCAAATTCTC
511931 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
511981 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
512031 TACTA TACTA T
1 TACTA TACTA T
512042 GTCCGTGACC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 106 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 511431 -- 511930
CATAGATTGTCTCCTATCTCTCCCCTGTCCTCTCGAGCTAATGACTAAACCGACCCACGACGAGA
GGATCAACCACTGCCATAGAAAGAGCAGCGACTAACTAAAACCAAGGAATCCATCATCTGGCATA
TTGGCAATGGGCGAACTGTCCGAGTGTGGCGTGATCCGTGGATTCCCAGAGCCAGCACTCTAACC
AACTGAGCTATTTCCCCAACTTTCAATTGCTAAAAACAGCAGTTCTTTCATTTCGGTATATTTAT
ATATAGCTTTCGCCCTTTAGTTCAAACAAACTTCATCTCCTGCGTCGGCTGTTTCACCTCAAAAT
GGCCTAAAGTACCTCGCCGAGCACATAAGCGAGTTCAACCACATCGTGAACCAATTGAAGTCGGT
CGAGTACCCATTGGGCGATGAGTAGAAGGCACACTGCTTTTTTTTCCCTCTATGCCGGATAGTTG
GTCCACAACCTTACTTATATGTTTATGTGGCAACGCCAAATTCTC
Right flanking sequence: Indices 512042 -- 512541
GTCCGTGACCGCATCGTAAACGAAGAGATTCGTAGGAAGGAGCGAGGCAAGACCAAAAGCAAGGA
AAGTAGGAGTTACTTGAGGCATAAAAGCAAGAATGCCAGGATTTCCCATGAATTGCAGAGAAGTG
GACTGGGTCTGATCGTATGAAAGAAATTCCTCCTCGATCGGGACATCGTTGGTTTGGTTAAGTGG
CGGGGGGAAAAGCTAGTTATTTCTAAAAGCAAAGGATCCATAAAATGAACCAATCGAGCAACTAC
GGCAATGCTCGATGCTATTTCGGGGCCTATGAGTAAGCGAAATGAAAGGACAGGTCAAGTACAGG
AGGTTTTCTGTCGCATTTCTTTCTATAGCATTGCTATATTGCTTTATGCACTTGTCGGCCTACTC
AGCGAATGTATGGATTCGGCCGGGAATAAGTACCTATCCCTTACGGGAATCGAACCCGTGTCTTC
GACATGAAAAGACGATGTCCTAACCACTGGACGAAAGGGACCAAA
Found at i:516943 original size:5 final size:5
Alignment explanation
Indices: 516936--517124 Score: 351
Period size: 5 Copynumber: 37.8 Consensus size: 5
516926 CGCGTATGTT
*
516936 AAGTT AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
516986 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
517036 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA
* *
517086 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTT AAGTT AAGT
1 AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGTA AAGT
517125 CAGTCAATCG
Statistics
Matches: 182, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 182 1.00
ACGTcount: A:0.58, C:0.00, G:0.20, T:0.22
Consensus pattern (5 bp):
AAGTA
Left flanking sequence: Indices 516436 -- 516935
AAGTCACTAAATCCCTATCTCCCGGTGGTCGAGTACCCCCGACGCGTCGAATGGGTTGTTTAGTC
TGACTTCTTGTGCTGGCCCGACATCATTCTGTCTCCCGCATTCTCTCCTTTCATCGGTTTGTTTT
TTTTACTTCGCTTCGCGATTAGAGTTGTACGCATCATGCATGGGAATCCTTCCGTCCTTGATGTT
AACGCTCTCGTGCGTAGGTCCCGGGTCAAAGGCATCTCGAAGGAAGCTGCTCCGCATATGCGATC
ACCTCCATGTACCTACAGATGAGGGCTCCAACGCCTACTGTACAATCATGTGGGAAGTGCATCCT
GCACACCAGAAAGTCAGTGGCGTACGCCACACCCCCTCCCCCTGTACCTACACCCATTGAAACGT
TTATTGTCTGACAATCTCCGACGCGACGCGCAACGCCCCATGCAAATCCCTACGTCGGTCGATCG
ATGCGCACAGAAGGAGAGCTTGTCCATAACGAAAACGCGTATGTT
Right flanking sequence: Indices 517125 -- 517624
CAGTCAATCGATTATACTATTTCTGTATAGGGGCAGCCGGGCCGTATTAGCAAGCGTGACGTGCC
GGACTGACCCAGCACGTCTTTCTTTCCTGGCAACAGAAGATGCACAAAGTGGTTTCAGTAGCACT
ACCGAGTTCGCATCAGCGATTTTCTCACCAAACAAGCAACGGATTGAGCAACTAGCGCTAGTTGC
GGCGCATCCTCTTGCTTGGAATCAATGGGTTTTGTCAATGAATTAATCTAATCTACCGGCATCGG
AGGGAGAAGCGGAGTCGGGAGCTGGAGGAAATAACACTTTTTGATGGACGGGAGCGGGAGGGAGT
CAATTACAGAAAGAGTAGAGACGGATATGGGGACTGTAGCTCCGACCATGTCAACTATGATGCTC
TCGCTGCTGCCAGTCCTTTCACCAGTGAATGCTGTCATGCGCTACTTCCCGAACCTCCGTGTCTA
GGTCCTGCCGAAAAAGACTGCAAATGATTTACCATCCATCCCACT
Found at i:519734 original size:6 final size:6
Alignment explanation
Indices: 519725--519868 Score: 252
Period size: 6 Copynumber: 24.0 Consensus size: 6
519715 TTATCTATTC
* * * *
519725 TAAGTC TAAGTC TAAGTC TAAGTC TAAGTA TAAGTA TAAGTA TAAGTA
1 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
519773 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
1 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
519821 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
1 TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA TAAGTA
519869 GTTTCTTCTT
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 137 1.00
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (6 bp):
TAAGTA
Left flanking sequence: Indices 519225 -- 519724
GAGGCAACGGCTGTACTCGGCACACAGACCTGGCTTATGAGCAGGATTTATCAGCCAAGTGCGTA
TGGTTGCTACCTGTATTCTGATAGGCCACTTAATGACACTGGCTCCCAGTTATTGACTTATGAAG
AATGGCTTCTCGATGGACAATAATAGGAAAATAGGAAGCTGCAATCAGAACCGGCTAACTAGACA
AAAGGAGAGAGATTGGCTCAGTTCAGTAGGAGGAATTTCTACCGATTATTGAGTGGTTTGTTTCC
TTTCCCCTGAAAGGTAAAATGGTTTATTTGCACCTGTAGTGGGACACCTCTCCCAGCTCCCAGCC
AGGGTTCAAGCAGGAAACTATGTTAAGGAGCTGATCCGAATACAGATACAAGGCCCCCACTCATC
ACAACGAACGGTGAGCTTTCCCACTAGCCTTCACAGGAGCAGCACAATCATGGCCAAAAACAAAA
AAAAAGATATCGTAGTACGAGAAAACCAATGGCATTTATCTATTC
Right flanking sequence: Indices 519869 -- 520368
GTTTCTTCTTTTCTTTTTAGAGGACCTGGCCAACTCTAATTCCAATGCTGCAATCCTATTGGTTT
ACTTAATGAGGGTGGGTAGACCGAAACGCTGAAGTGTTGTTATTTACTTCCTTCGATAACATAGA
TTGTCCACTCTTATGCCCCATGCATAAAAATGGCTTGTGCTTTAGAATAAAAGAATAGAAAAAAA
GTAGGTGGATCGGGATCGCTATTACGAGTATTCGAGTTCTTGTTTTCCTTTCCTTGGAAAGGGAA
TTATTTCATGAGAAGTGCACCGGTAGAAATTGGACTAAATATGATCTTGATCCATAGCTCGTCCA
CTTTCTTGATAAACGACTCGATGCATTTTCTCTTCCTTGCCGCTGAGACATATCAAAAAGATCTA
TTACTAAAAGGAGATTGGGATCATCCTGTGGTTACCGGATGATGGGAATAACTAAGCAGAAATTA
GGAAATGAGCACGAAATGTCTATAAATGAATTTTCTCATTATTTG
Found at i:542314 original size:5 final size:5
Alignment explanation
Indices: 542304--542369 Score: 132
Period size: 5 Copynumber: 13.2 Consensus size: 5
542294 CTAAGTGCGC
542304 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
542354 TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT T
542370 GTAGTACCTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TCTTT
Left flanking sequence: Indices 541804 -- 542303
TAACGAATTGGATAAGATCGGAAGAAAGGCCCTATTGTTAATGAGAATAGTAATTCACTATCGCT
ACTGCTCTACTTTGACACAGGATCACATCACTGCCCTTCCAGTGAGTTCGGAATGTTTGTCCTAA
GCATTCAATACTTTTCTAGATGACTTGAACTTGTTTCAGAAGTGGGGCCTAAGCAAGAAGAAAAT
AACAATTGAGAAACTACTTTCGAAAAGACAATAGCCAACAACATAGATTTGCCACGGACAAGGAT
CTTGCTACCTTATTGTGAATTCCTTTTTTATTCAATTGTGTACTCGTTCCTGTTGTTGTGCCATT
AGTGACTTGAGAAGACTGTGTGAAAGAGAGCACGATGCCGACCAAGTCACAAAATAGGTTCTCCC
GATTTCAAAGTAATTTGTTGATGCTTACACAATAGGTAGACCCCACTCTTCTCTTTTTCTCCCGT
CCGCCTTGCCTTTCTTCGAAATGACACTCTCTTTTCTAAGTGCGC
Right flanking sequence: Indices 542370 -- 542869
GTAGTACCTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTAT
TAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTATTAGTA
TTAGTAAGAGTATTAGTAAAAGACTAGCTAGCCACATCCCCTGACTCTCAGTCTCAGTCAACTCA
AGGTGAGAAGCGAAAGGCCAGCAACTGCACTAACTGAGGGACACATTGAAAGCAAGAAAGAAATA
GAACTTAGACAAAGAACAATAATACGATACTGAAATCCGAGTCGGCAATGGGCCGGAGAAACATT
CACTCGTTAGCGACTCCTACTAAACAGCCAGACAGAGAAGGAAAGCAATGGAGATTTTTCTATTA
TCTATTATACATTCCCTGAGAAAGGAAAGCCTTCGCATACTCGCCCTAGCTCTGAGGCGACTTTA
TTGCTTGGGTTAGTTGCCCTGGGTCAAAAGGGGACTACTCCTGAA
Found at i:542389 original size:6 final size:6
Alignment explanation
Indices: 542378--542517 Score: 262
Period size: 6 Copynumber: 23.3 Consensus size: 6
542368 TTGTAGTACC
542378 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
542426 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
**
542474 TATTAG TATTAG TATTAG TATTAG TATTAG TAAGAG TATTAG TA
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TA
542518 AAAGACTAGC
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 130 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
TATTAG
Left flanking sequence: Indices 541878 -- 542377
CTTTGACACAGGATCACATCACTGCCCTTCCAGTGAGTTCGGAATGTTTGTCCTAAGCATTCAAT
ACTTTTCTAGATGACTTGAACTTGTTTCAGAAGTGGGGCCTAAGCAAGAAGAAAATAACAATTGA
GAAACTACTTTCGAAAAGACAATAGCCAACAACATAGATTTGCCACGGACAAGGATCTTGCTACC
TTATTGTGAATTCCTTTTTTATTCAATTGTGTACTCGTTCCTGTTGTTGTGCCATTAGTGACTTG
AGAAGACTGTGTGAAAGAGAGCACGATGCCGACCAAGTCACAAAATAGGTTCTCCCGATTTCAAA
GTAATTTGTTGATGCTTACACAATAGGTAGACCCCACTCTTCTCTTTTTCTCCCGTCCGCCTTGC
CTTTCTTCGAAATGACACTCTCTTTTCTAAGTGCGCTCTTTTCTTTTCTTTTCTTTTCTTTTCTT
TTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTGTAGTACC
Right flanking sequence: Indices 542518 -- 543017
AAAGACTAGCTAGCCACATCCCCTGACTCTCAGTCTCAGTCAACTCAAGGTGAGAAGCGAAAGGC
CAGCAACTGCACTAACTGAGGGACACATTGAAAGCAAGAAAGAAATAGAACTTAGACAAAGAACA
ATAATACGATACTGAAATCCGAGTCGGCAATGGGCCGGAGAAACATTCACTCGTTAGCGACTCCT
ACTAAACAGCCAGACAGAGAAGGAAAGCAATGGAGATTTTTCTATTATCTATTATACATTCCCTG
AGAAAGGAAAGCCTTCGCATACTCGCCCTAGCTCTGAGGCGACTTTATTGCTTGGGTTAGTTGCC
CTGGGTCAAAAGGGGACTACTCCTGAATCACATTAAGTATATAGGAAACGTAAAGGGAGATGGGA
GCATCTCTCCATCCGACTTCTTCCTCTCACTCGGCCATCTCTCCCACATCATCCTATTATTTACC
AAAAACTTACTGAGTGAATAGCGAGTTTTCATAAACCTAATAAAG
Found at i:556645 original size:21 final size:21
Alignment explanation
Indices: 556619--556661 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
556609 CAAGGCCTAA
**
556619 TCGACCTTCTAGAGCAGATTC
1 TCGACCTTAAAGAGCAGATTC
*
556640 TCGACCTTAAAGAGCGGATTC
1 TCGACCTTAAAGAGCAGATTC
556661 T
1 T
556662 ATACTAGACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (21 bp):
TCGACCTTAAAGAGCAGATTC
Left flanking sequence: Indices 556119 -- 556618
TATGCATTCCTAGAAGCGTCTTTGCTTTCTTTCCGTCTGCTGAAGCAAGGGGGTACCAAATGCGA
TTCCATACTAAACAAATAACGATAGCCCACTGAGGTTAGCGAGCCTGAAAGCCCTATTACTCAAG
AAGGCTGGCTGTTCTCGAAATAGCTTTGATAGAATGGTTTCGTGCTAATGCTGTTTCCCAACCAG
GATTCTAGCTACTAACACAATCAGCTCCCAACGACCTACTTGCTGCTACAGCTACTGGTACCAAC
CAATGCAATGCCGATCCCATTCCTTTCCTCTTGCCATGACGGATATCAGCTCCCAACAGAACGAG
AAGAGAATACGACCGATGCCAAGAGCTTTCCTCGAACGATGACTGAGGAAACACATCCAACCTCG
AATGCTGAGACAAGACCGGGCACACTTCTATAATATAATCAAAGTAATATAAGAAAAGGGCCGAG
AACTTTGATACCAGTGGAGTGCGATGACATGATGACAAGGCCTAA
Right flanking sequence: Indices 556662 -- 557161
ATACTAGACTTGTGGCTTCAGGAGATGAAAAGCTTGATGAACCCCGACCCACTAGACCAAGTGAT
TGATGTTGCATTTCGAGCACAGGCACCTTTGACCTAGCTTTCGACAGAGAGAGACAAATGGGAAT
GCCAGGCACAACTCTTTGCTTTGAAGCATGAGAGAACGAGAACATTTCCACTGCTTTAGTTGCTA
GAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTAGTACTAATCCCATTCCTTT
AGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATTTCCTTGCTTCATAGGTTTC
AGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGGCCCGGTGGAGCAATCTCGA
ATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTCCAAGTGGGTCGAATAGGAC
TAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGGGA
Found at i:557349 original size:6 final size:6
Alignment explanation
Indices: 557338--557485 Score: 296
Period size: 6 Copynumber: 24.7 Consensus size: 6
557328 TAGCTCTATA
557338 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
1 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
557386 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
1 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
557434 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
1 CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT CCATTT
557482 CCAT
1 CCAT
557486 AGTAATACTG
Statistics
Matches: 142, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 142 1.00
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (6 bp):
CCATTT
Left flanking sequence: Indices 556838 -- 557337
TCCACTGCTTTAGTTGCTAGAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTA
GTACTAATCCCATTCCTTTAGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATT
TCCTTGCTTCATAGGTTTCAGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGG
CCCGGTGGAGCAATCTCGAATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTC
CAAGTGGGTCGAATAGGACTAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGGGAC
AAGGTTGGTTTACAGTACAGACAGTTTCCTAGCTGGCACTTGAGAAGTGCTCGTCTAGTTTAGTG
ATTCCTAGCGTAGAACCCTTCTGTATGAGAATAGTTTCCAGATTATGACCTTCTCTTTTGATTGA
GTGAATAGCCATGCCATGGATTCTCTTTTCTGGGCTAGCTCTATA
Right flanking sequence: Indices 557486 -- 557985
AGTAATACTGCCTTGGTGAATCCCTTATCTTGTTTGCAGCATCATTCTCGATCCCCTTATTCCCT
TCCCAACAAGCAAGAAGGAATCATATCCTACGGCTAACTCATCCTTATATGGCTCCCAGATCCTT
AAAGAGAATCAAAGGCTATCTCGAGGGATGGTCAGAGAATCGGTTTATCTTCACGGCACTAGACG
GCACCTTTATGAGTGCGTATAAGCTTGCTTTAGAGCTAGAGCGTGCATCTAAAATAGTTTCATAT
CCCTTTCCATCGATCTTTCTTGGTGCTGTAGTACCCATTCCTGCTAGCTTGATCTGGTGGCCTTC
TCTTGGCCAGGACTATATATAATAGTTTATTGAGTGCTTCTTGGGTTGGTTCTCTTGAAGTGCAT
AGCCCGGCCCCTTTTCTCTTTCTTCCAACGGAAAGGGTTCTCTTCTCTTCTGGTATGGAGTTCGA
CTAGAGCCTGCCGCTTTTCCAGGTTTGGGTGTGGGTGGATCTCAT
Found at i:572478 original size:27 final size:27
Alignment explanation
Indices: 572440--572491 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
572430 CAAATAAGTG
*
572440 TATTCTTACTAGATGAGACATCTTCTC
1 TATTCTTACTAGAAGAGACATCTTCTC
572467 TATTCTTACTAGAAGAGACATCTTC
1 TATTCTTACTAGAAGAGACATCTTC
572492 AGAAGATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (27 bp):
TATTCTTACTAGAAGAGACATCTTCTC
Left flanking sequence: Indices 571940 -- 572439
AGAACGAACTTCCAATGCATCGAAGCTTTCTACTCCTGCTTGAATACTTGCTCTTGCTCAATGGC
CGAAAGAGAACTTTATTTAGTAATGCACTTTAAAAAGCTTTCCAAAATTGGCTAACTGGATTGAT
TTTCCCTTGTTGGGACTGGAGAGACTTGTGCAATTGGAGGGGCACTTTCACCCACAGGCTCGTAA
GGGGAAGGGACAAATACCTTTACTTGGTCTAACAGTCCAAGAGCTCTCACGGTAATTGGATAGCT
GGCTTGAACCAAGCCAAAAGGCGGTGTGTCATCACCTTGAACCAATGAATTCTCAGATTACTGGC
AGTAATTCGTTCATTTCAATGAAAGAGCAGGTAGCTATAAGTTTCCCCACTCTAATAGTCTTTTT
TAGATTCAAGCTTATTTCCTTGAGGGTCGCAACCCGAATCTTAGGATAGTCTACTTTCTGTTCTG
ATAGTATAGGAATAGCAGTCACAGAGGGAGGATCACAAATAAGTG
Right flanking sequence: Indices 572492 -- 572991
AGAAGATTTCTTCAAAAAATGCAAAAGAATTTATCGTTGGTCCTGTCTTCTTTCCAAAAAAAGTG
AGGGGGCCCACCACACCACTTCCCTCGACCCCTTACCACGGGAGTCACTAAAGATGAGACTGACC
ATGATAAGGGTATGGGGCATTGATTGGCTTGGAGGATTAAGGGGAATAGATTCGGGTAGTGGAGC
CAACATATTAGGTCGGCCACTGAGATTTTTCCCCTTTTTCTCCACCTGCGCAGGAGGGATTGCAG
CGGGATTCAGATGCCGCTCTTGACTGAGCCCGGGTTTAGGGGCTACCTGGGTTTGTGCCCAACCT
GGGGGCGCCAAGCGCAATTCGAGATCGGGATAGAGGGTAAAAGCAATCCATCCTTATAGCAAGTC
CTAGAGTTAAGTAAAAAAGACTTCTCGGGAGTTTGGGAGTGTGACTATAACCAGTACTCATGTAT
AATATCCTCTTTCTAGTTAAAATGAGTATTACCTGCCTGCACAAT
Found at i:573569 original size:23 final size:23
Alignment explanation
Indices: 573537--573582 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
573527 GCCAGATCAT
573537 GACTCATCATATTTATATATATA
1 GACTCATCATATTTATATATATA
*
573560 GACTCCTCATATTTATATATATA
1 GACTCATCATATTTATATATATA
573583 ATAGAAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (23 bp):
GACTCATCATATTTATATATATA
Left flanking sequence: Indices 573037 -- 573536
GCCTAAGTGTTAAGCATAGCATATCTTATATTAACCTATCTTAAAAGGACTTCCAGACATTTATT
TTAGGAGAGTCATTTTGTAGGGCCATTCGCGAGCCAGTACCCTTATTAGGAAAGTAGGGACTTAT
TCGAAGTTCATAGATATAGTCTATCAGGCTGGTCTCCGGGGTCGTTTCCCTAGCAGAGCAGGTTG
GTTTCCGGTTCCCTACAAGCGTTCTATATAAGCGGTCCCTGCCAGTTACATCAAGTTCCATTCCA
GCAATCAATTAGGCTAGTATTGATAGTTCAAGCTAAAAATTCTTTCTTAAAAAAAATAATAGGTT
AGCGGGACAAGGAAGAAAGTGCGATTGTATTAGTGTTCCGGGAAGAAAGGGAATCCCGCGCTTCT
CTAAGAAAAGAAAAAGAGAGAGTTTACACAAGTAAAGTACTAAACGAGAAAAAAAGCATTTCTCG
AGAAAAGGTCCCATAGTCATGATTGGGTCGACCAGGCCAGATCAT
Right flanking sequence: Indices 573583 -- 574082
ATAGAAAGATGAAAGGTTTCTTTTTGTTCGGTCAGTCTGTTTCCTCTCGATTCACCTAAAACTTC
TTTTGCCACTGACGTGATACAATGAGCCATCTCATTCTACATTGAGTTAGCATCCTCACCTAACT
TCCACTCCGTCTCATTAATTATTTTCTCTTTAAACATAACTTGCTTATCCCCTTTCCAATTCCAC
CACCTAATCCTAGGCTCCCTTGCTCCTTCTCTTCCATCTCTTAATACTAAGATAGAGTACTCAAA
ATCTATGTTGGGTTGCTACACTCTCTCCAGGTATCACCCTTACAATCCTTGAAATACTTCTGATC
TGCTCGTCGCGTTAGGAAGAAGTCAATCTGACTAACATTAGAACCACTCCTAAAAGTTCCCAAGT
GCGAGTCTCTATTCCGTGTTGGCAAGTATCAAATCATACGCCATAGCAAAAAGATACTTTTCCGC
GTTATCTCAAGAAAAAGGACGAAGAATTATAGAATTGTCGTGTAT
Found at i:576527 original size:18 final size:18
Alignment explanation
Indices: 576504--576538 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
576494 GTTGCTACTA
*
576504 CTTCCTTAATAAAACCAG
1 CTTCCTAAATAAAACCAG
576522 CTTCCTAAATAAAACCA
1 CTTCCTAAATAAAACCA
576539 ATAACAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.29, G:0.03, T:0.26
Consensus pattern (18 bp):
CTTCCTAAATAAAACCAG
Left flanking sequence: Indices 576004 -- 576503
GCTCTAGGGTCATTCCCTTCTCAAGGCTGGCAAAGTAGGTTCTTTATTACTCGAAAGCCGTTGCA
CTTTCGTTTCTTAAAAGTAAGGTATTGGTATACGGATCAGTAGGAACTGTTTTGGAAGTCTACTC
TAGTCTAGTACAGTGCTTTAAAGTAAAGGTAGCCAGTAGTGGTAGCCTGTAATGGATCGTTCAGG
GAAGGGAAGAAGCGTGGCATCATTTATCCTAGCTTTACAAGCTTGATAAGTATTGGTACAGGTAT
TGTTAATGGTTGGTTCCTTGAAGGGAAGTGCTATCATTATAGCTATCTTTTTACTAGTAATGGAA
AGGTACAGGAACCTTCCTTGAGAAGAATGGGTTTTGGTGAAGGTGCGGGGCTGGTATTGGTTTTT
GTTGCTAGGTTTTGAAGATGCCTTGCAGGGAATTGGTACAGGTACAGCTTCCTTCGTATCTGGTA
TGGGTGATTGGTATAACCTAATGAAAAGAGGAGTGGTTGCTACTA
Right flanking sequence: Indices 576539 -- 577038
ATAACAACTTTCTTGTTCTTCTTCTTCCTCTAGCTCCAATAGCAACCTGCTTCGGATCCAGCATC
TGCTTTCTTCCTATTTCCTAAATCTAACAAAAACAACTTCTTCTTCATCCTCCTACTCCTAAATA
ACAACCCTGCTTCATACCTTTTGGCCTTGCAGAGAAGTGGTATCACTGCCTGAAAGGATAAGAGT
GTGTCTAGTTTTACAGTGTATAGCCTAGTGCTTGAGTAGAGAGGTTTCTTTCTGCCTTTTGTACA
AGAGCAGTTAATGTAGTTGTACTGGTTCGTTTAGGCCTTGCTTGATGGGATGCAGGTGATGGTGA
AGTGTTCCTTGCTTTAGAAGAGTCCTATATATTTTAGCTGACAAGAGCAGTTAAGTTAAGTAAAG
TTATGGTAGTGGCAGGTAAGGATCCTTCGTTTCTGGTTTAAGCCCGGATAAGAAAACAAGGAAGT
TGGTTGAAGACTCCCTCTCTCTCATTCTTCCGGAATGGAAATGCA
Found at i:586821 original size:5 final size:5
Alignment explanation
Indices: 586813--586838 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
586803 TAATAGAATA
586813 ATCCC ATCCC ATCCC ATCCC ATCCC A
1 ATCCC ATCCC ATCCC ATCCC ATCCC A
586839 GTAGTAGTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.00, T:0.19
Consensus pattern (5 bp):
ATCCC
Left flanking sequence: Indices 586313 -- 586812
TGCTTGTACTATGTGATAAGTTAACATCTTCATTACTCGATGGATTCTCCTACTCTGGTGGAGTG
TAGCCCCGAGAACATAGCTAGCCCAGAAAGATTGAAGTGATAGATTTGCCTGGAAAAGAAAGGTT
TAGCGCTGCCTTTCCCAAAAAGTATCGTCTTTCCCTAGGGAGGACAAAGATTAACCAATAGTAGT
CCCGAGGATTGTATGAGCAAGGTCCGAACTGTTTCTATTAGTAGCAACATGAGGAGCCCCGAAGG
GAGAATAAGAAAGATTAACCGACGCCGCGTTTTCAGAAGAAGCAATTGGATAAGAATCATACGCT
GTGAATGAGCAGACGAATCGACCGAGGGCTTACACACAAGAACAGAACCTAACTCTACTTCTTTT
TCCTCCTCTCCTCTTTACTGCCCCCGCTATCCTATCAACAGGTCAGTCAAAAAATATATGTAGTG
GAGAAAGAAGAGTAGCCCCCCAGGTCATCAATTAGTAATAGAATA
Right flanking sequence: Indices 586839 -- 587338
GTAGTAGTCCTCTTGCCTAGCGGAGTCAGCCCTTAATGGGCAGACCAAAGATTGGACATCGTTGT
CTAAGCGTGCTTGCTTTGCACACCGGCACAGCTGAATGAGAATCCGCTGGCTCAGATTGAGTGGC
TCACTTCCTTGAGAAGGGCTTTCTATAACTAAGAAATGAGAATTGTTGACCCATATGATCTCAGG
CTCATAAAGAGGATGAAACTGATAATTTCATTCACACTTTGAGATTGAGCTCGTCAGTGATTTTT
TCCAAGGTGTCTAGAGAAACCTGCTTTGAACATGACATTCGTACCCAAGGAAAGTTTTGGCAGGC
ATTACTGTGATCTTGAAGCCCTTGCTAGGAGCTAGTCGGTACGGCTCACTATTAAAGAAGGTTCT
GGCATGCTTCGACTTATCCCACTGCCCGCTGATATGTACATGGCAATAGAAGACTATACCCACTT
TTTCGGGGAAGGTTTTCAAAAGCGCTTCATTGTGTGACGAGTTTA
Found at i:587996 original size:5 final size:5
Alignment explanation
Indices: 587986--588060 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
587976 CCCCCTAACT
587986 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA
1 ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA ATAGA
588036 ATAGA ATAGA ATAGA ATAGA ATAGA
1 ATAGA ATAGA ATAGA ATAGA ATAGA
588061 TCAGATCCAC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
ATAGA
Left flanking sequence: Indices 587486 -- 587985
TGTTGCTAATGGAGAAAGATTGGAGTTAAGTTTAGTATGCTTTCTAAGATAAGAGGAGGAAAAGA
ATGAAGGTGTGGGCGGGAAGGAGGAGGCAAGGCCCCCTCAATGTGTATTCGACTACTCATTACGG
AACCACCGATTGATCCGATTAGACTTCCCGCGGGGTAGCACGGGGAACTTGCTGAATCAACTCCT
TGGAATCGGAGGCCTGACTGAGGGTCAATCCTATGGTAACCTCAACCTAGGAATGCCTGTTTCAC
TTCCTTGACAGAGCCAACTGAGATGCTCTGTCTCGATGTTGACCTAACATGGATTGATTAGAAAT
TCTGAAGGGTCTCATCCTGATCTCGCAAAGGATCAGCAATAGCTGTGTGTACTCGAGGACTCTTA
GGGAAAGAAAAGCACTTTTCTCTCTCAGCAGTTAGACCGGCTATGGGCGGGTTGGTTATATACTG
CGCCTTCCTTCTTTCGAACCTTTTGGTATGTATTGCCCCCTAACT
Right flanking sequence: Indices 588061 -- 588560
TCAGATCCACCGGACCAGAAACTCAATTCCGCACTGCTGCTGAGTCGTCGGGCTTATCCACCTCA
GGGATTCGTGGAATTTCCGTTTTTGAATTGCGTTGGGGGAAATCTACCAAAGCTAGGCAGATAGA
TAGACTCCTTTCCCGCTGCTAAGGGAGAGCAAGAAACTAAATCACATGATTTTTCACCAGCGCCC
TTTTTTTTGCGGGTACTAAGAGTCCTCTCACTACCAACCAGCAGACATCATCATCTGGCTGGGTC
TTGCCGGTATCAACAACGAGAAAGAAGAACCAAACCAAATGGAAACAGCAACTAACTATGGCTCT
TGGCCCAGACAACGTCCTAGGCGTAGGGGAGATCAAAACAAGAAGTCACGCCTAGACGACGACGC
CCGTCCTGGGCTGCAGTAAGTAGATCGAGAGGTCGTTCCGCCCCTTGTCCCCGAAGATGGGTAAT
ATGTTCTCATACAATGTTGCTCCAACTTTTTTCTAGAGGGCCTAG
Found at i:592844 original size:21 final size:21
Alignment explanation
Indices: 592818--592857 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
592808 ACTCTATTCT
592818 ATGCTATATTTTCTATTAGAA
1 ATGCTATATTTTCTATTAGAA
592839 ATGCTATATTTTCTATTAG
1 ATGCTATATTTTCTATTAG
592858 GCCATGCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (21 bp):
ATGCTATATTTTCTATTAGAA
Left flanking sequence: Indices 592318 -- 592817
TTACGAGAGACAAGACTCAAGACGATGAGGTGAAAACGTTCAAGTGCTGGTAAGGGTTCCTGGCT
CCTACTTTTTTAGGATGATGGCTCATACAACGTTGCATTGGTTGAAGCCTTCCTTCCCATACTGA
CTCTCCCTCAGCGCAGACCATCCTTCTTGAACTTTTTCCTTTGCATTGGTTGCTTTGTTAGGCAG
GCGAATTTCTTCTACTTGCCTACAAATTGAATAATTGGAACATATTTTCCACAATTTATTGAGTA
TAATTTTATAATGGTCAAAAGAGAGGGCGTTATATATAGGCTCGCTCATTCTTTCATGCTAGGCT
TGTTTCTAATTGCCTTTCTTTCTCTTCCTCATCAAGGTTAGAGTCCGCCCACAGGGCATGCATTC
TTCTATTTCATAGGAAAGATCCATTGGTATTGATTGATGGGAAGGCGTAGGATGTAAAGACCAGA
TATAGCTGCCCATTGGAGAGCTACTTAAACCTACTACTCTATTCT
Right flanking sequence: Indices 592858 -- 593357
GCCATGCTGGAAGACAACTCTTAGCTACTTTATGGTATCGAAGAGCAACTCGTTCGAAAATGAGG
GATCTATTTTGCCCTATTGAGTTTCAGTCCTATCCAGAAGTGCTTGCTAGAGTCAAGCTATCTAA
AGGAGCGAGAGCATGAGAGTTGCTTGTCTTTTCCTGAAATCCATCCTTTGCTTTGGCATCCGAGT
TAATAGCCTATTCTTATAATATCATGGATAGGGCGGAGTCATGACTCCTAATGCTTATCTTCCTG
GAATTCTTCCTTTTCCATCCGCTTTACTCCCTTTGTGTCGGAAAGTCCTAACGTTCATGTGAGAT
CTGTTTTCCCAGGGAGGCAATTAGCAATCCTATAAGTGAGATCGGGAAAGACTTGGCACCCACTT
CGTTGAGGTATGGAACATGCAATAGTAGGCTCCTGCTTCAAGGACAAGAGGCTGATAAAAAACAG
GGATGGGGGCTAGAGTTACGTAGATGAGCTAGGTCTTTGAAGAAG
Found at i:595468 original size:15 final size:15
Alignment explanation
Indices: 595448--595477 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
595438 GACTAGGAAG
595448 TAGGAACTAGCTAGA
1 TAGGAACTAGCTAGA
*
595463 TAGGAAGTAGCTAGA
1 TAGGAACTAGCTAGA
595478 GGAGTGACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.30, T:0.20
Consensus pattern (15 bp):
TAGGAACTAGCTAGA
Left flanking sequence: Indices 594948 -- 595447
TTGAACCAACCCTTTTCTCGAAGCGGTGAAGGAATGAATGTCCCGGCTTTTGAACATTGAAATAG
CATTTATTTCAGAGTTTGTCTATGTCAAAGTACTGGCATGCGGGCAGAATCATAAGATAAGGGAG
ACTCTGTGCTGGTGAGAACGAAAACGAAGTTGCTTTTGACCTTGCATTGGTCTCTTCCACACGGG
CATACTAGGTCCTTGTAGCCTTATCACGAGACCTCTTAGAGTGAGGATTCGCTCTAAATAGTAGA
AAGAGACAACAATATAACCCGCCGAGAAGACCAGGAAAAGAGAAGGTTGATTTCTTAAGCAAGAG
GAAGACTCTATTCTAGGGGAAGTCGGAAGAAATGGAGCTAGGAAGTGCCGGAGGTCTTGGTTTCG
AGAAAGAAAGGAGGTGTTTGGTTTCGGGAGTTGTGCAAGCGGAGGAAGAGTCAAGCAAGTAGTTG
GAGAACCGGGGAGTAGGAAGTTGGTTAGGGAAGAAGACTAGGAAG
Right flanking sequence: Indices 595478 -- 595977
GGAGTGACCTGTGGATTCACTAGCTTTTTCATGCTCTACGGAGCGTTGGACAAGAAGCACCGGAT
TGAGCTGGCCGCGCCCTTGTAAGAGCTATAAAGTAAATGGTTGTTGTTTGACCTCCAAGAGGAAG
GGAAAGGAGCTATCTATTCCCGGCATGGAGAAATGTTTCACTGGGTATGTGTTCCCTGCTTTTCA
TTATTCGATTTCTGATATTTACCAAAGAAAAGACAAGATGGGAGCCGTGTCACTACAAGCTACCC
CGGATTCCTAGAGTACATCTCCAGTATTTGCTGCAAAGCGTGGTAGAAAAGCCTCGCATAAATGA
TTTACCTAGTTCCTGTATGGTTCCAACTTCGATCGATCCACCGTATCCACCTGGAAACAGAAATC
CTAGGAAACAAGCTTAGATGCGCAGACTACACTCACCCTATGACTAAGATACCTGGCTATCCCTC
TCTACCGGCACTGCTCTAGAATCGAGATATGGATAAGCCGGCACT
Found at i:597729 original size:5 final size:5
Alignment explanation
Indices: 597719--597789 Score: 142
Period size: 5 Copynumber: 14.2 Consensus size: 5
597709 AGTACTACTA
597719 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG
1 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG
597769 TATGG TATGG TATGG TATGG T
1 TATGG TATGG TATGG TATGG T
597790 TTGATCAGTG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 66 1.00
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (5 bp):
TATGG
Left flanking sequence: Indices 597219 -- 597718
TGAACTGATATAAGCCTCCTCTGCCTGAGTGAGCCTAGATTGGATTGATCTTCTGCTTTGACTAC
AGATCTTAGATTAGATCGGGTTTATACTCATTGTAGATAGCGCTCACTGCCTTGGGCGCCCTCAA
AATAGAATGGATTCCTCGAACAATCGAATCTGCTGCCCCGGATGATTCCTCGAGCTGTGGAATTG
GTGGCCCTGACATTGCTGTCTTCTTTCTCCTGCATTCAGATGCAAAAGATGCTGTTCTCTACTGC
GGAGGATTCACCATCAAAAGTTTTATTAAAGATTTTGGTTTGCCCAGGTTGTTTCCTTTTCTTTA
TCTGCCTGCCCCGGCCCCTTCTCTCTTTCATCCGTTGTACAGGGTTCTCAGATGGTATGGAGTTC
GAATAGAACCTTAGCTTTTCCTGGTAACTGCTATTTCAAGGAAAAGTCAAGTCCCGGATAGGTCT
CCGCTTCCCTTGGTTGTGAGCTCCTTCCGGCCGGCAGTACTACTA
Right flanking sequence: Indices 597790 -- 598289
TTGATCAGTGTTTTTTGAGAAGGTTTGATTTCCAGAAAGGAAAGGTTGGTATGGATGTTTGATCT
CTTTGTGGAAAGGTCAGAGCATTCCCGGTTTGGGTGGAGCAAGCTTTCCTAGTCTCGGGGCTAAC
TTAGAGTTCGGGTCTACCTTGCCTGGTCAGTTGTAAGCATTCCTGCTTCTAACCGTTTCTTGGGG
ACTCAGCTTTACTGGATCTTACCATTCATTAGTCTCCAGAATTCAGTAGAGTAGTCTAAAGAGAA
GAGAGTGCGCCGCTATTGAGATCTAGTTCTAGGAAGTATCGAGGGAGGGAGATGAGAACTCACCT
TTCCCTGGTTTGAACTGCTTCTTGGTAAGGCTTATTCTGGTTTCTCGAGTTCCTACTGTTTCTTG
ATAAGGATCTAGGAATCCAAAGATCCGGCTCTAAGCATTCGAGGGCAGAGGTATCTTCCCTTTTG
GTGGTTCATAGGAGGTTCTAGTTTCCTATTGCCTAGGCTATTGCT
Found at i:598955 original size:5 final size:5
Alignment explanation
Indices: 598949--599001 Score: 97
Period size: 5 Copynumber: 10.6 Consensus size: 5
598939 TTACAAATAG
*
598949 TATAG TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
1 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
598999 TAT
1 TAT
599002 CCAATTTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.42
Consensus pattern (5 bp):
TATAC
Left flanking sequence: Indices 598449 -- 598948
ACAAGGGCTATCGTTGCAAGCGTTCCTCTTTCAATTCAAAGTATCACGAGCAAAGAACATTTGTA
ACTAGTTTTCCTCCGTCCACCATGGAATGAAGATGATCAAATCAAGGATTTGAAAGGGAAGTAGG
GTTTACTACTTGCCAACCAGGAAGGTAGGACTTACTCGGATAGGGAGCTCGGGGAGCAAGCAGTA
GAAAAGCAAAATAGCGAAGACAGGGAAATGGGGGAAGGGGAAGTTCTTGGTTGAGTGCGGTTGTT
CTCCGATAATCCGGTTGAGAACTTTTCCAGCGATGCAGAGGAGAGATCATTTACAAAGAAAGCTA
TGACTAGGCTAGGATATTCTTCATAAAGATACTCTGGACAGGATCATCGATTCGCTTCCATGGTT
GAAAGTAGTGGGACTGCCACATAATACAATGAAAATGAATTCATTCTCGGTTGAGCAGGAGATTC
TGATCCAGAAGATGCCGCAGAAGACTTTGAAACGGTTACAAATAG
Right flanking sequence: Indices 599002 -- 599501
CCAATTTATTAGTCTCTGGGAATGTGTTCATAGGCCAGGATCTGAGATTCCATGTGTCCTACTTC
TCTGCCTTGGAGGATATGTGGTCGATGAATGAATAAAAGGCAGGTGTCTCGATTGGCAATAGCAT
TTCGAGTTGTGTTTTTTTCAGACTTGAATATTGATCTGGCGCACAGAGTTCTAGTGGTAGTCCCA
AACTCTGAAATGAGAATGCAAGCAAGGAAGCTCCAATGGTGACTACTTAGGCGCCGCTATGTGAG
AAGCGGTATCAAAGAATAGGAGGGAATCAAATAAGCACAGCCTTCTCTTCTAGCCAGGACCTCAA
GAGCGCACGAGCAAATGTTAGCAACACACCACAAAGGAATCTTCCCCTATTGGCCCGAATTCGTA
ACCTAGTAGGATCTTAGAGTCCTGCCCCATCTGGTAATTAGCCGGATCAGGATGAGAAAGTCAAA
GACACCCACTTCTTGATCTCTTTGTCAAGACCAAATGCAACCAAG
Found at i:605916 original size:18 final size:18
Alignment explanation
Indices: 605893--605930 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
605883 CGAGAAGATC
*
605893 GACGGAGCTAACTTGTGA
1 GACGGAGCTAACTTCTGA
*
605911 GACGGAGCTCACTTCTGA
1 GACGGAGCTAACTTCTGA
605929 GA
1 GA
605931 TAGAGCTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (18 bp):
GACGGAGCTAACTTCTGA
Left flanking sequence: Indices 605393 -- 605892
CAGGCCAGGTTACGGTATGCACCGAAAGTACGAATAATTAGACCTGCTGCCATTCTTAAAACGCA
CCTGTGTCACTACAGTTCAAAACTGCAACAAAACAGATGCATAATGAGACCGAGGAACCCATACC
ATTACCGATGGGAGGCCCACAAAAGCTATGATTAGGAATCCGGGAGTGGTTTAAGAAAGAAAAGG
AGTTGTTAGCGATTCTCGTCAAGGAAGTGTTCCCTCGACTCGACCCTCCTCGTTCGGTAGAGTAC
ACATATTAACTCGAAATGCAGCAGAAGACACCTATTTAATCGATTAATATCCAAACGATCCTATT
TTCGAAAGGAAAGCAGATTCGGATTTCCTAGACCCACACAGAAAACAGCCCATATTTAAACCAGA
AATGAACGAATAAAGGCAACTCCAGGAAAAACCTGGTACCCGTTACTTCGACCAGATCCCAATGG
ATCCGTACAGGGTGGTACATTTGAACTGCTCCTCTCGAGAAGATC
Right flanking sequence: Indices 605931 -- 606430
TAGAGCTGTCTTCTTTCTCTGCGGCAGGGCAGTGCACCCACCCATCTCTTCCTCTGTCCAAATGA
TCCACCTGATTGGTCCTTTCGGGCATATAGAGTCAGTCTCATCCAGAGCATCACGAGCTTCACCA
CTACAACCATCAGACATTCATGCACGAATCCATCCCTCTATCTTTGTTTCGCTAGCTGCCCTACC
TCGTAATGGTGCCAGTGCCGGCTCGATGGTGGACTCGGGAATGGTCAATCCAGATGTAGAGAGCT
CCCTAAAAGGAAACCTGTTTTCATCAAAGACAACATGTCTGGAAATCCAAATTCTGTTAGTTGGT
ATATGAAGGCAGCGGTAACCTTTCTGTTGTGGTGCATAACCAAGAAAAATACACGGCATCGAACG
AGGCTGAAGCTTGTGATCAATGTAAGGTCTGAGGTGAGGCTGTCTGAGAATACGAAGATTCGGGT
CTTTATGAAACAATTGTGTGAAGGGAAGAAGAAGAGGCGCGGAGC
Found at i:609875 original size:3 final size:3
Alignment explanation
Indices: 609867--609988 Score: 244
Period size: 3 Copynumber: 40.7 Consensus size: 3
609857 ACTAAGCCTT
609867 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
609915 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
609963 CTA CTA CTA CTA CTA CTA CTA CTA CT
1 CTA CTA CTA CTA CTA CTA CTA CTA CT
609989 TAGGTTAGGA
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 119 1.00
ACGTcount: A:0.33, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
CTA
Left flanking sequence: Indices 609367 -- 609866
CCGGTAGTACGAATCGCTACGCTTCGCTTCTTTCTATATGATAATATGCACCGTCGGTTGCTGCG
CTCCCTGCGGGTAATAGCAAGAGAGTGAAGAACGAACGATCCTCAAAACAAAAAAGTCAGCAGTG
AATGAGTCCGACTCGAGTTCGTGAGTCAAAGGCGTGGCAAGAGAGCGAGTTCGACTCGCGAACGA
TCCGCAAGTGAAGGACCGATCCTTTAACGCCAGTACTGTTGCGAGACTGGTACTTGGCGGCTCAC
GAGCAACATATAGACTAAGGTTGCCCATCACTCCCTCGCTCCTTTTTGAAGGCCCACCGCTCCCC
CTTTCTTTAAGTATCTATCCCGGCTTGCATTTTGGGGCGAGTACTACAGTTCCTCCATAATCACA
CAGAACGCCCAGCTTCGCAGAGCTGCTCTCTCCCCAGTCCACAGCAAGGTGTGGAATCTGGATCT
ACTGTGTGTTCTTACTCTATTGGATCAAGTCAGATACTAAGCCTT
Right flanking sequence: Indices 609989 -- 610488
TAGGTTAGGAGATAAAATGCTATATTTCAGAGATTGGACTCTCTTACTGTGTTTTTTCAGGGCTG
TTCCCGAGCCAGGTTCCCTGGATCCATTCTGACCTAAATGGATGAATGAAGAAGGGGGCGAGCAG
ATACGACGGCCACACACTTCTTTTTAGCCGAATAAAGCCGGATCTACTACACGGCTAGGATCAGA
GAAAGATTGAGAAAGCAAGATCAAACCTACTCTACTGTCGATTCAAAAGGTAAACTGCCCCCGAA
GACTACTTTATCAATGAATGGATCAAAGAAGGAGGCTCTATCTATGTCATCGTATATAAGGGAAG
AAGCCCGCCCCTGATCGAAGAATGAAGAAGCTAGCCCGGGTAGGGTAGACTTTAAGAGCTCTTGC
TCTGCCTATCCGTCTCGCTCCGTCTTGGAGGAAAGATACGAAGGGCCTACTCTTTTCATTAAAGC
CCTACTCTTAATATAATATAATATAATATAATATAATATAATATA
Found at i:610462 original size:5 final size:5
Alignment explanation
Indices: 610452--610521 Score: 140
Period size: 5 Copynumber: 14.0 Consensus size: 5
610442 GCCCTACTCT
610452 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
610502 TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA
610522 ATAGTGAAAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 65 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Left flanking sequence: Indices 609952 -- 610451
TACTACTACTACTACTACTACTACTACTACTACTACTTAGGTTAGGAGATAAAATGCTATATTTC
AGAGATTGGACTCTCTTACTGTGTTTTTTCAGGGCTGTTCCCGAGCCAGGTTCCCTGGATCCATT
CTGACCTAAATGGATGAATGAAGAAGGGGGCGAGCAGATACGACGGCCACACACTTCTTTTTAGC
CGAATAAAGCCGGATCTACTACACGGCTAGGATCAGAGAAAGATTGAGAAAGCAAGATCAAACCT
ACTCTACTGTCGATTCAAAAGGTAAACTGCCCCCGAAGACTACTTTATCAATGAATGGATCAAAG
AAGGAGGCTCTATCTATGTCATCGTATATAAGGGAAGAAGCCCGCCCCTGATCGAAGAATGAAGA
AGCTAGCCCGGGTAGGGTAGACTTTAAGAGCTCTTGCTCTGCCTATCCGTCTCGCTCCGTCTTGG
AGGAAAGATACGAAGGGCCTACTCTTTTCATTAAAGCCCTACTCT
Right flanking sequence: Indices 610522 -- 611021
ATAGTGAAAGCCTCCTTCTCTTACCTACTTTGACTCATATCTTCGGTATACCTCAATACAAGACA
AGCACTGGAAAGGATATTCAAGAAAAACCGGGCTATCGCCCTATCTAAGCGGGTTTCCCCTCTCC
TCTACGGGAGTCCTCTTTTAGTCTATTTCAGTTCCTGTGTCTATCGCTATCGCCCTATTCTCTCT
CAATTGCCTATCCTTTTAAAATGAGGGGGAGTACCTTTTCTTTAGCTTCCAACATGAAAGATTGA
CCCAGATATGCAAGTTTGATGAAGGACTACTTACTTAGCTAAGCTAAAGTGAACTTCTGACTAAA
AAAAAAGTGGACTAAAAGAGAACAACAAAAGAGAGATCACTTTCGACGATTAAACAGCACTTTTA
TATCCAGATTGGAACTGGACTTGAACCTTCATATCCAGATTTCACTCCACTTTCACTTTCACTTT
CACTTTCACTTTCACTTTCACTTTCACTTTCACTTTCAATAGTGA
Found at i:610970 original size:6 final size:6
Alignment explanation
Indices: 610959--611014 Score: 112
Period size: 6 Copynumber: 9.3 Consensus size: 6
610949 GATTTCACTC
610959 CACTTT CACTTT CACTTT CACTTT CACTTT CACTTT CACTTT CACTTT
1 CACTTT CACTTT CACTTT CACTTT CACTTT CACTTT CACTTT CACTTT
611007 CACTTT CA
1 CACTTT CA
611015 ATAGTGAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.18, C:0.34, G:0.00, T:0.48
Consensus pattern (6 bp):
CACTTT
Left flanking sequence: Indices 610459 -- 610958
ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATAAT
AGTGAAAGCCTCCTTCTCTTACCTACTTTGACTCATATCTTCGGTATACCTCAATACAAGACAAG
CACTGGAAAGGATATTCAAGAAAAACCGGGCTATCGCCCTATCTAAGCGGGTTTCCCCTCTCCTC
TACGGGAGTCCTCTTTTAGTCTATTTCAGTTCCTGTGTCTATCGCTATCGCCCTATTCTCTCTCA
ATTGCCTATCCTTTTAAAATGAGGGGGAGTACCTTTTCTTTAGCTTCCAACATGAAAGATTGACC
CAGATATGCAAGTTTGATGAAGGACTACTTACTTAGCTAAGCTAAAGTGAACTTCTGACTAAAAA
AAAAGTGGACTAAAAGAGAACAACAAAAGAGAGATCACTTTCGACGATTAAACAGCACTTTTATA
TCCAGATTGGAACTGGACTTGAACCTTCATATCCAGATTTCACTC
Right flanking sequence: Indices 611015 -- 611514
ATAGTGAATTATTCACTTTCCGGAATTGGCTCATATTCACTTTCACTTTCACATAGGCCAAGAAA
TACAAATAAGACCTTGAACTCCCTATTTCACGTATAATCGAGAGACTCAGAATATCAGTGCCTTG
GGTAAATGCCTACCAAAGGGAGAAGATTACCGAACTTTTTTCTGTCCTCTTCGCTTCCTAAAATA
TTTAGGGAAAAGGCCTAGTCGGCCACCGCTTGCTAACGACGGAAGGATGAAAGGGTCCTCGCGTG
GGACTTAGTTGGAAAGGTAGGTGTTCGGCATGTCCCTTGCTTGCGAACTTCTTTAGTAGGGCGGG
TAGCTTTGGAGATCCCATTTTTTACGTTTACCGTTGTCCCCAGACTTCACTCTTTCAACACTTGT
CTACTTTCGAAATAGTCAGGCGGGTCCCTGTCTCCAAGTGTGTGATCCACCGATTCACTGAGTGG
GTCTTTCTTACCGCAGTTTTCCCTATCTCTTAAAGGCCTATCAGA
Found at i:615302 original size:29 final size:30
Alignment explanation
Indices: 615258--615317 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
615248 GCACTTCTTC
*
615258 TCAAAAGAACTGCTAGGCAGG-CATCCAGG
1 TCAAAAGAACTACTAGGCAGGCCATCCAGG
615287 TCAAAAGAACTACTAGGCAGGCCATCCAGG
1 TCAAAAGAACTACTAGGCAGGCCATCCAGG
615317 T
1 T
615318 AGGCGGGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 20 0.69
30 9 0.31
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (30 bp):
TCAAAAGAACTACTAGGCAGGCCATCCAGG
Left flanking sequence: Indices 614758 -- 615257
CCACCGGGATTTCATCTAAACTCCGTGCCGTGGTGCACATTAGCAGAATACATTCCGCTTCGAAA
GAGCCTTATACATAGACGGAAAAAAGAAGAAGAGGGAGAACGGTTGGATTTGGTCTTGTTGTCTG
TTGTTCTTTTCTCTATCCTTATAGAGAAAGTGTTGGGTGACTTTCCCATACGATAATAAAAAGTT
TTTCAAACAAGTAAATCAAGTCCTAGGTAGAGGTTTTCCCCGAGTCTACATACTGTCTTTTGAGT
TGCTTTTTATCGAGGGAAAGAGGGGGCCTAACTAAAATAAATACGGGATTTTCTCCCATACTTTT
TTACTGAGCCAAACGGACGGAGTTAAGACTTCGACTAGCTAGCTTTGAACAATAGACTCTAGCCC
CACCAGGTAATCTGGGGCTTTAAAGGGCGACCCGCTTAACTTTACTGAAATGAGGTAGCTAGAGA
AAATCCATGAAATGGGTTGGAATTAAGATGTGCGCGCACTTCTTC
Right flanking sequence: Indices 615318 -- 615817
AGGCGGGTAATTCTCTCCGTATGGCTGGAAATGCATGCTCTCACTTCGAGTTTCAATTCAATCTT
ATCGCAAACGCACTACTATGCTTATGCTATAGCTATATCTAGGAAAAGCGGCAATACAAAGCCAA
GATCTTCCTTACTAAACTTAACTCATAAGTTTAAGTTTAAGTTTAAGTTTAAGTTTAAGTTAATG
AGGGCTAATCCGTCCGCACAACTGGTAAAGCTTTCCCTGTCTCTTCGGGAATACAAGACAAATAA
AAGAAAAAGTAAATGCAAGACAACCTGAAAGGAATTCCTATGTATGAGTTAGTTCGATTCCATAC
TCGGACTGGTATATATAAGTGCTCATCACTACTCGACTCAATCTACTATAGGTAGGTAGAGAGTA
ATTCTCCGAAAGAACTACTAGTAAAATATGTAGGTAGGGCTTGGGCAAGTAAGTAAAGTAGGCAT
GAGTTATCTTTTCCTACGGCCTACCGAGTCAATCTATTCGGACAA
Found at i:615484 original size:6 final size:6
Alignment explanation
Indices: 615473--615508 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
615463 ACTTAACTCA
615473 TAAGTT TAAGTT TAAGTT TAAGTT TAAGTT TAAGTT
1 TAAGTT TAAGTT TAAGTT TAAGTT TAAGTT TAAGTT
615509 AATGAGGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TAAGTT
Left flanking sequence: Indices 614973 -- 615472
TCCTAGGTAGAGGTTTTCCCCGAGTCTACATACTGTCTTTTGAGTTGCTTTTTATCGAGGGAAAG
AGGGGGCCTAACTAAAATAAATACGGGATTTTCTCCCATACTTTTTTACTGAGCCAAACGGACGG
AGTTAAGACTTCGACTAGCTAGCTTTGAACAATAGACTCTAGCCCCACCAGGTAATCTGGGGCTT
TAAAGGGCGACCCGCTTAACTTTACTGAAATGAGGTAGCTAGAGAAAATCCATGAAATGGGTTGG
AATTAAGATGTGCGCGCACTTCTTCTCAAAAGAACTGCTAGGCAGGCATCCAGGTCAAAAGAACT
ACTAGGCAGGCCATCCAGGTAGGCGGGTAATTCTCTCCGTATGGCTGGAAATGCATGCTCTCACT
TCGAGTTTCAATTCAATCTTATCGCAAACGCACTACTATGCTTATGCTATAGCTATATCTAGGAA
AAGCGGCAATACAAAGCCAAGATCTTCCTTACTAAACTTAACTCA
Right flanking sequence: Indices 615509 -- 616008
AATGAGGGCTAATCCGTCCGCACAACTGGTAAAGCTTTCCCTGTCTCTTCGGGAATACAAGACAA
ATAAAAGAAAAAGTAAATGCAAGACAACCTGAAAGGAATTCCTATGTATGAGTTAGTTCGATTCC
ATACTCGGACTGGTATATATAAGTGCTCATCACTACTCGACTCAATCTACTATAGGTAGGTAGAG
AGTAATTCTCCGAAAGAACTACTAGTAAAATATGTAGGTAGGGCTTGGGCAAGTAAGTAAAGTAG
GCATGAGTTATCTTTTCCTACGGCCTACCGAGTCAATCTATTCGGACAAGTAAATAAGTCTGGGC
ATTCCTTCACTTCAGGTAATTCGATAAGTAACTACGTTCATTCAATGCTAGGGCTCTCCACTTTT
TGTGAAATTACAAGGGGGAAAAATGCTCTCTATCTATTCCAATATAGACTTGTTTGTGGACCTAC
CTTCTTTTAGTTAGCAAGTTCGTAAGGCAATACAAATCCAAAAAA
Found at i:619827 original size:6 final size:6
Alignment explanation
Indices: 619812--619959 Score: 289
Period size: 6 Copynumber: 24.8 Consensus size: 6
619802 ATCAAATATC
619812 TCAA-T TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
1 TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
619859 TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
1 TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
619907 TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
1 TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT
619955 TCAAT
1 TCAAT
619960 ATAGTAAAGA
Statistics
Matches: 142, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 4 0.03
6 138 0.97
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (6 bp):
TCAATT
Left flanking sequence: Indices 619312 -- 619811
TTCCGCTTCCACGGAAACATTCGATAAGTTATACGTTACAAACTAACACTGCGGGCACAACTTCA
TCGTGGTTCGACTCTGCGATTACTCGACTCTCTCCTCGATTCTGTTGTCCCTTGCCGCCTTAGGG
TGAGTAAGCGGCTCTAGTCTCTCTCTCCTTTACGATCTTAGTCGAGATCTCCCTGCTTAACCCCT
TTCAAGATGTTTTGTTATGTGTTACCTTTTTTTCCCAGAATGATCGGCCTCCATGGAGGGTCCTT
ACCTCAACATGGCCATCATACAGGTAAACAAACTTTTCATCGTTATGAGTGATAAAATACGAATT
ATTTATATAATCGATATATTCAACAGATCCTTCTAGTTGGTTTGTAGATAATAGACTTTGAAGAC
CTTCTAGGTTACATACAAAATCATCGTACTTGAAGGCTATAAATACTTCGTTATACCAACGGCTA
TATTGTACTCCTGGATACCATTTATCAAACACTGTATCAAATATC
Right flanking sequence: Indices 619960 -- 620459
ATAGTAAAGATGAAATAGAACTTTAGTTAGTTCTCCTACGGGAGAGACCCATGGGTAATTTATCA
TATTATGATTCTGAATAGAATAGATTGGTAGACTAACAACCTGTCCGGTTAGATCTTTTATAAGA
CCATCGGGGATAATACCATCAATATATGCTAATATATCAGTTTGATTTGTATGATAGAAACTATC
ACTCAACTGTATCTTTACAAGTGCTTTAACGTTATTCTGTTCACCTAAGCCTTTATAGTGGCCTT
CCTTGAGATCCCTCAACTTAGTGAGTTGCGGGGGTGTGTAATATCCATATCCATCTACTAAGACT
AAGACGGTGTTTAATAACACTTTTGCTAACGCGTGCATTAGAAGTGCATCAGATGCAAATCTACA
CTTATAGACATGTAAATCATCACCGTTCACACATTCTGTGGTTAAGACCCCTCTATCTTCTTCCA
TTTCCATAGTAACTAACTGATAGAGGAAATTCTCTTTCTTTAAAT
Found at i:624793 original size:5 final size:5
Alignment explanation
Indices: 624783--624827 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
624773 CAATTTCACT
624783 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG
1 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG
624828 CTGGCTCTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (5 bp):
ATAGG
Left flanking sequence: Indices 624283 -- 624782
GAAACTGAAAACTCCCCGACCCAAGAATCTAATAGAGTCACCTGAGACTCATCAACCGAAGAAGC
AAAGGTGGTGACAGTGAAATAGGATCAGTCGAGCATATTCTAACCTCGGATTCTGAGTACGAAAG
AAAGGGTGTATCCCGCCAAAACAAAAGACATACTGGGGATGCCGTTTCCTACTAATATCAAGGAA
TTGAGAGGCTACCCTCATTCAGCTTTCGCAGGCCCGGGCACTTTGGAGTTTTGCTTGGCTTTTCT
AGTGCTTCAAAAAGCAAATCTGGTTCGTGTGGGGCTAATGGAGAAAAGATGTACAGTGATGCAAA
ATGTCAAGGGCGCGCAGCGTGGGCATATTCTGAGGCAGTGAATGAGTCCGTTCAAGACTTCGATC
CTATGCTTTCCTAATCTAGCGACTTTCGGATTATTCTTATTCCCTGAAAAAAAGGAGCCCTTACT
CATCTTAAACAAAAGGCTTAGCGCCCTCAACTTACCAATTTCACT
Right flanking sequence: Indices 624828 -- 625327
CTGGCTCTTGGTGGAAAGGTTCAATTTCTGATTCTTTTCTTGGAGCTGCAGATGTAAAGAAGAAT
TGAATGCCGGCTATTGCTTGATCTTATCCGGCTGGCTGGCCATAAACAACCAACTACTGCATAAA
ATAAAGAACAGAAGGATAGGGCTGAAACGTGGCTAGAAATGCGGAAAGCAATCGATTGAATCCAA
CGTGAGTCAACAGCGGGGTCTATTAGTGCGTTACCGAGGGTGGTATCAAAGGCATAAAAGGGTTC
GAAAGTCATACGGCGCTAACACGCATCCATTTTCTTGCTAGATGCTGACCAATTGGTCATGAACA
TCGTAAGGCGTTGCTCTTCGCGAATCCCTGCCGTAGTATCAGCTACCCCTACTCGCTTAAAGCCC
TTTACCGAAGAACTTCCACAATGGTTTCCCTTTGACATCTTGTAAGTCACAGCCTCCTTACCCAG
CGAGTGAATGAACGAGCCAATAAACTGGTGATCGGTCCATTTACT
Found at i:625657 original size:6 final size:6
Alignment explanation
Indices: 625646--625741 Score: 176
Period size: 6 Copynumber: 16.2 Consensus size: 6
625636 ATTCTTTCTA
625646 CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG
1 CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG
*
625694 CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CAATGG C-ATGG
1 CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG
625741 C
1 C
625742 GGATAAAGCA
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
5 5 0.06
6 84 0.94
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.31
Consensus pattern (6 bp):
CTATGG
Left flanking sequence: Indices 625146 -- 625645
ATGAACATCGTAAGGCGTTGCTCTTCGCGAATCCCTGCCGTAGTATCAGCTACCCCTACTCGCTT
AAAGCCCTTTACCGAAGAACTTCCACAATGGTTTCCCTTTGACATCTTGTAAGTCACAGCCTCCT
TACCCAGCGAGTGAATGAACGAGCCAATAAACTGGTGATCGGTCCATTTACTATTTATTATAGTC
TATGACGGAAGATCGTCTCTTTGCACATGAGATGCGTACTTTGTGGTTGGCCAGGATAAGCAAAG
CCTACATCATCTAGGACTTGCCATTGAAAATAAACCTTTCTATTCGGTCATCAACAGCTCGGGTC
CATTTAGCTTCGGTGACCAGATAGATCCATCATCTTCGAGGAGGAGGAAACATAAGTCCAATACG
CGTTATGGAAGACTAGGGATTGCTAATCCGCCCACGCGGGAAGCCTTCTCCCTCTCAGGCTCAAG
AGTCAAGATAGCCCGCCCTAAACAAGAAGCAGCTTATTCTTTCTA
Right flanking sequence: Indices 625742 -- 626241
GGATAAAGCAAACCAAAACGCGCAACGGCTTTCGCGCTAGTTGCTCCATCCGTTGCTTGTTTGGT
TTCGATGCATAAATCAACCTCTCGTTCAGGCGGTAATCCTGGTAGAGTCTCATGGAAGACGTCGG
TAAATTCTGACACCACTGGAATAGATGATAGGTTCTTGACCTCCGATTTCGTCTGCATGGCTGAT
ACAAGGTAGGCGGTACAACCTGACTCGATTAGATGCTGTGCCTGTAAAGCTGAGATTGTCGTGAT
TCGATCACCAACTTGTCTGAATTGCAATGAAAATGGCTTAGTCCCCGGTTTCTGGAATGTCACCT
TCCTGCGTGGACAATCAATCGTGGCATGATGCATAGTCAACCATTCCAAGCCCAGCATCATATCG
TCCTGCTTTTGCAACTATTGGGTCTACTCTTAGCTCTCGTCCTGCAATCTGTATCTTAAGGTATG
AACACCTCAATTCCTGAATGAAGAATTCAAAGGTTCCGATCAACA
Found at i:629271 original size:6 final size:6
Alignment explanation
Indices: 629253--629337 Score: 163
Period size: 6 Copynumber: 14.3 Consensus size: 6
629243 AAGCTGTTCC
629253 TAACCA T-ACCA TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA
1 TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA
629300 TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA TA
1 TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA TA
629338 GTATTTTAGA
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
5 5 0.06
6 73 0.94
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (6 bp):
TAACCA
Left flanking sequence: Indices 628753 -- 629252
TGCCAGAACTACTACTAAATGCCAATGCTAGTGCTAAGCTTCAAGTACTACTCAGAAATCTTATG
CATAGGAAATCCTATCTATATAGATAGTGGTTTCGTTATCCTCAAGTCACTCAATAAACTCTTTC
CTACTTTCGTTAGACTTCTATCGGGTAGCTGCTTACACCTACTTTCCTATTATAAATTGCTGCTA
CTCCCTATGTTTCCTATTTTTGCGGCTACCTCCCTAGTGAGTGAGTCCTCCCACCCAAGCTAGAA
ACCTATACCCAAGTTAACTCCTTTCTACTATTTGTTTTCGTTCTTATACTGATTGCTGTTTTTCA
CTGTCTCCTATTCATGCTTAGCGCCCTGGGTATCCTTTGAAACTAGGCCGGCTATCAATAGTTGG
ATATGAAGTAAGTGAAGAGCGAAGTCATTAAGAAAGAAAAAAGGGTTTCTAATATTTCAGTGAAT
AAGCCTGAAAGAAATTGCACTTGTTGAGATAAGTCAAGCTGTTCC
Right flanking sequence: Indices 629338 -- 629837
GTATTTTAGATCTCAGTCGGTCCACTCAAGCTTACCAGATTGTTTGTAAGGTCTCGCGCATCGTT
GATACTTGGATGTTAGTGGTTCAAAGATAAGAACTATTCGAAATTAATTCAAAAGGAATGAGTTT
TTTTGAGTTACGTCTGTGACCTCGGGAAAGTCATCTGCTACTCTGCTTCTCGACACGAAAGCAGG
GCAATGCTCCATTTTTGATAATTCGTCCTACCCTTAGCTTTGCTACTTGACTCGGAACAACGGTT
CGGAGTTCGCCAGAATACGACGACATGCTGAGTTCTCAACGACTAGCATGAATTGAAGGACGCTG
ATTGCCGTTGTACCTATTGATAAAGGATTGGACAACTCGACACGGACTACGCAACGGGCTTCAAG
GAATTGAAGAATCAACTAGTCACTACGCTGCATACTCGTACCAGGGAATGTTGCAGACCGACCTT
CGTTGCTGGGCTGGAATAGAAACTGACGTATGGAGGACTTGTGAG
Found at i:631850 original size:6 final size:6
Alignment explanation
Indices: 631839--631928 Score: 180
Period size: 6 Copynumber: 15.0 Consensus size: 6
631829 CCTTTTCTAC
631839 TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT
1 TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT
631887 TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT
1 TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT TTAGTT
631929 GGACGAAAAT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 84 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.67
Consensus pattern (6 bp):
TTAGTT
Left flanking sequence: Indices 631339 -- 631838
GCCTATGAGCTTACCTGTGAATACTTTGTCCAGCAGCCCTTGTTTCTAAGCACCCATCTCTTGCT
TTGCCTCCTCCTTGCAACCAGAAACCTATCGCCCCTCTCTTTTCAAAACAAACAACGCGGAGCGC
CTTGTGAAGTGAAAAGATGAGCTATGATGACTTGGCTTCCTTTCTTCTTTTCCTTGTGCAAGTCA
ACTGTTCCCTGGCACACCTTCAGTTCAGCTGTGACATCTTGCACTTGTAAGATCACTTGCTTGCC
TTTATGCTTGAGTTTCCGCATTCCTTTACTCCAGTCAACTGTCATTTGACCAAAACTTGACAACC
AGTCAATGCCTAAAATAAGATCATAACCTTGTACATCAAGCACCCTAACTTCTGTTTCAAATTCA
TGGTTTTGTAACTTGAATTGAAGGTTGTCACATTTGGTACTGGTCAATAACTTACGGCGAGACGA
GCAGCCCTATACCACGTGTAGCCACACTCGTCTGTCCTTTTCTAC
Right flanking sequence: Indices 631929 -- 632428
GGACGAAAATCGTATAAAAATCAAGCAAGAGGATGCGCCGCAACTAGCGCTAGTTGCTCAATCCG
TTGCTTGCTTCTCTTCTGTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAAGAGA
GGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTTCAGTCTACCGCTCATGTTCGAC
GCTATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCG
AAAGGCCATGGGGAGAGAGAGCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGC
TCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAA
AGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATC
AAAAGAAATCCGAAGCGGTTTCATTCGATTTGTTGTGGATTGGAT
Found at i:644710 original size:5 final size:5
Alignment explanation
Indices: 644700--644725 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
644690 CTTGAACTTC
644700 TTCGT TTCGT TTCGT TTCGT TTCGT T
1 TTCGT TTCGT TTCGT TTCGT TTCGT T
644726 GGTAGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.19, T:0.62
Consensus pattern (5 bp):
TTCGT
Left flanking sequence: Indices 644200 -- 644699
TGGGTTTATTATTCAACCATGGATCGCAGCGCAGGAATCAAATCAACGAGAAATACTATACTCGA
AATTTCGAGTTGCGAAGGAAAAGCGTGAAACCCGACAATGTCAAGTTGAGGTCCTATGCCTAATT
TGAATTTCGCTCAATTAGCAGAGGGAATTCCTAATTCACCTTTGTTGATGGTGGTCGTCATTCTT
ATTTTTTTCTTTTTAACCATGTTCAGCACCTACGCAATCGTTCTGCTATTGCTGTACACGGCAAA
AGCATATAGTAAAATCTAATATAGCCGCGGCGGATAAAGCTGGCATCGTTGTCGCCCACTCTTTT
ACCTACTCCTGGTTAAAAGGAGTATCACTGACAGCGATTCGGCTCCACCCGGCGAGCCCTGAGAA
GCCACAAAAAGCAACGGCGAACTGTCCTGGGCTAACTAAAACTAAAGAAGAATAGCGCTCTTTTA
AAATAAGAGTAGGCATGCGCTTGTTATTTGTTGTTCTTGAACTTC
Right flanking sequence: Indices 644726 -- 645225
GGTAGAACCAACGACGACCAAAATCCAAGTCTCCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGA
TGGACAGTAACGATCGCGTAATATCAATTTATCGGCCTCGTCATCGAAAGCGGCTTCCAATTGCT
CGGAAATTCTCAGCTATATGGGGGACTTTGATGGTGAGCAAAAAGAATTGATCAAGAAATTGGTA
AACTTTCGCATGATCGATGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATAAAACTTTTCACCG
CCTAGCTCGAACTGAACGCGATGTAATCAAACTTATGGTTGACGCCGTAGATAATATAAAGCCAA
TATGCGAAGTGGTCAAAGTAGGAGTCGCAGGTACTATTTATGATGTTCCTGGGATTGTAGCCAGG
GATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGGAGCAGCTTTCAAACGACGTATAAGCTA
CAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGATGC
Done.