Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MK759657
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 368269
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:8923 original size:21 final size:21
Alignment explanation
Indices: 8899--8942 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8889 TCTTTGAGAG
*
8899 CATAAAGAGGGCCTTATAATT
1 CATAAAGAGGGCCTTAGAATT
*
8920 CATAAAGAGGGTCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
8941 CA
1 CA
8943 AACTAGATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (21 bp):
CATAAAGAGGGCCTTAGAATT
Left flanking sequence: Indices 8399 -- 8898
CGGACCAAGGGGAGATTCCCCTTTCGATTGGAGTTCTACGGTGGGAAAGAAAGTAAGGAGTTAGA
GCTCGGAAGTGAGAACTAGCTTATAGGAGCGAAGCCACTCGACCTACGGGAGAGGAATGAGTACT
CTCTCTCCTCATTCAAAGAAGATAGAGGAATTCCCCAGGACTGCTATAACTATAGGGGGAGAAGT
GAGAACTAGCTAGACCATATTGACTTTTATATAGGCTCGACCTTCAAAGAGGGAGTAAAAACTGA
CTTATAGGGGTTGCCAGTCATAGCTATAGGAAGAGGGAATCCAACTATCGCAATTCAATCATAGG
GCTAAACTGTGCTTGATTAGTACCGGCTTTCGTTGAACTGAACAAGCGAAATGAGAATGTCAGTC
TAGTGGGCGAATAGCAATCGGGCTAAATGCATGGCTTCTACTCCTAATTCTACCTTGAAAGGGCT
TCGTTTCGGCCTATGGAATCTCAGTTCTGTAAAAGTCTTTGAGAG
Right flanking sequence: Indices 8943 -- 9442
AACTAGATATCGGATGAAAGTGGTATGACAACCTCAAACCCCGGTCCCATGGGGAGAGTTTTCTA
TTTGAGTTTCGGAAAAGAAAGGAGAAAGGACTTTTGAAGCTTGCTGACTAGGGTTGGAAGCTAAA
TTCAGTCTTATAATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGCTACT
TTCTTGTGGTAGTCATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGAC
CGCAATTGCAGGAATAGGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTTCTTTCGTTT
AGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAA
CCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTTA
GCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGT
Found at i:10574 original size:18 final size:18
Alignment explanation
Indices: 10553--10595 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
10543 CAACCTTGTT
10553 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
10571 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
10589 GACTATG
1 GACTATG
10596 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 10053 -- 10552
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 10596 -- 11095
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAGGGCGAGCACTTAAATGAGAAAGGCTTGTAGACTCGTGACGCTGAACGAGACATT
CGAAAACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCC
CGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAA
AGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTA
GGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAG
AGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGT
TCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACG
Found at i:21574 original size:27 final size:27
Alignment explanation
Indices: 21536--21587 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
21526 ACTTGTCAAT
*
21536 AAACAATTCTATGTTCAATTTGACTAC
1 AAACAATTCTATGTTCAACTTGACTAC
*
21563 AAACAATTCTATGTTCCACTTGACT
1 AAACAATTCTATGTTCAACTTGACT
21588 CCTACCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
AAACAATTCTATGTTCAACTTGACTAC
Left flanking sequence: Indices 21036 -- 21535
AATGATCACTGGCCGGAACGATCTATGATAGCTATTAACTAGTGCCATGGAGTCAGTCAGTCTAA
ACTCTATAGCTCAACAGTCTAGTGCAGCTAATGTACGAAGGAAGCAAGAAGTCAGCTAAAAAGTA
TGAGAATCTCCACTGTTCAATCAACAACAACAGGGAGGGATGCCCCCGAGGGCATCCCGATCGAT
TCAATCAACAAAGCAAGTGTTGTGAGCCCACCGGCGAGTGAGGGCTAAACGGTATTTATAGATTG
AAACTAGAAAACCTTAATTCCTGAACTAGCCTCATGAACAAGCCAGTCTCAACTTTCCTGTTCAA
CTTTCTAGTGCGTCTATCTAAGGATAGATCTCGGTATCTGTGGAGAGGAAAAGAATGAATCCTAC
TAATGCGTCAAAATCTAAAAAACATTTATCTGTATTCCCCTTTCTTTATAGGTCTCGTGTTCCCC
CTATTGAACGAAATGCAAAAACCACATACCCACAAACTTGTCAAT
Right flanking sequence: Indices 21588 -- 22087
CCTACCCATACCGTGTTCAATTGTACAACTACCAATTCAATCTTGAGATTTAGTAAGAATAGCAG
ACGGTATACTAGTCAGGACTCTTCTTTTCTACGAACAAGTCAGTACTCGCACTATTGGGAGAACA
TGCGTCAAAGAAGGTCGTTTTCTTTTCCGTCCTCGCACTATTGTACGAATTTATCCCTGTACCTA
AAAAAGTCTTTATTTCACGCTGGAGCATTTGTAAGCGACGGGATCTTAGCAGCTTCTTCCCGAGT
TGCATTAGCTAAAGTGGATCTACGATCACGGGAACTAATCAATCGGTCTGTTCTGCCCCATAAGC
ATCTGGATGGTCTACGATCAGTGCTATTCGTACACCCTATGCCTGATTTCGCAACTTCAACCCTT
TCCCGCTGTAACTGCGCCTTATTGGCTTCTTTTCAGGCTTGAACAAGCAAGTACGCAAACAGCCT
TCGGTTCCTAACAAGCTAAGCACCTACCCCGCTGGCCTGGGGAAC
Found at i:26546 original size:28 final size:28
Alignment explanation
Indices: 26506--26561 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26496 ATCCATAGCT
26506 AAATGGTTCAACATTTGAAGTTCTTTCC
1 AAATGGTTCAACATTTGAAGTTCTTTCC
26534 AAATGGTTCAACATTTGAAGTTCTTTCC
1 AAATGGTTCAACATTTGAAGTTCTTTCC
26562 TTGGTCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (28 bp):
AAATGGTTCAACATTTGAAGTTCTTTCC
Left flanking sequence: Indices 26006 -- 26505
CTTGAAAATGACATCTTCGTGAAATAGAGAAAGCCGCCCCGTCTCCAACTGAGGTCTTCTCGCCC
GCTGCCAGGAAGATTCGATCCCAACGACCGCCTCGCAAGACCTCTGTACTTTTTTCTTGCCTTTC
CTTATTTTCATTTCAGGAAATCCACTTCTTTACTAGAGAGAACTCGATTTGAAGCTTTCATTCCT
CTTCGGGTGGTTTGCTTTCTCTTTATTTAGCTATTGAGCAAAAAGAGTTCGCTACCTTTCTGCGT
CAATCTTGTTTTCGGGGGGTTCGTAAGCTGCAAGAAAGGAGAGAGAGGCAGGCTATCTCTTTTTT
GAAGTCAGTGCTTGTATTTGGTCGTCCAGTTCTTCCGGGAGGAAAGGGGCATTCTTCACTCCTTC
GCGACGCCTCTATGTACTACATAAGGGGCGGACTAAGGGCCCATTGGTTCTACCTTCTTTTCTTT
GTCGGCGACAAGGGATCTCTCAACCCCCGCTAAGCATCCATAGCT
Right flanking sequence: Indices 26562 -- 27061
TTGGTCTTCATTCAGTGAAAGGAGTGAAGCTTTCCGCAGCTGGAAAGCGGAGACCCACGAAGGCG
AGATGATCCCAAAGCGAGAATGAAGCTAGAGCCATTACTTGACCAAGAACGTGAGAGGATTGAAC
ACACCTTCCCCGGACCGGGTGGATACACTTTTTGACCCTTCCCAGGATTGAACTACGGGATCGAT
CTCTTATTTACCAAGATATGAAAGCCACGAGCCACTTTCTTTCGATGTGCTGTCATGATCACATT
CTCAGTTTCGTACGAGATTCCCAGTTTAGCTTACGGGGTCAAAGTCTTCTTTGGACTTTTCCAAT
TCTATTTCTTTTTCATCAATCGGGGCGAGAGGGAGCTGCTTCGAGGAGGCGACACCCACTAGTTT
TGTCCGGATCAAACTCTCCCCAAAGCAGGTAGGTGAGAAGGGCTCGGCTCCATGCAGGTCTTTCA
CCAACGGCTGGCACTGAATTAGCGCGATGCGAAAGAGTCCGGGCT
Found at i:32239 original size:39 final size:39
Alignment explanation
Indices: 32184--32262 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
32174 CCCATCCTTC
*
32184 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
32223 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
32262 A
1 A
32263 TAGAAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 31684 -- 32183
GGAAGCCGGCTTTTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
TGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCCATTTTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAATAGCCCCATTAAGTGAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 32263 -- 32762
TAGAAAATAGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCATTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:38104 original size:12 final size:12
Alignment explanation
Indices: 38069--38104 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
38059 CCCTTTATCG
38069 TCATCGTCGCTA
1 TCATCGTCGCTA
* *
38081 TCATAGTTGCTA
1 TCATCGTCGCTA
38093 TCATCGTCGCTA
1 TCATCGTCGCTA
38105 AAGCTCCTCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (12 bp):
TCATCGTCGCTA
Left flanking sequence: Indices 37569 -- 38068
CTTGCTGCCAAACAACCTATTGCTATTGACAAGAGTCGGTCAATGCCATTCAATGTCCAGCCAAT
AACCAATTGAGGAAGCAAGCCGAATCCTTATATACGAGAGAATAAAGGGATCATAGCGGTGAAGG
AGGACGACCGGAGAGAGGAGCTTACGAAAATAAGCTACTAAAAGCGACGAGGGCAGCATGTCTTT
ACTGGGGAAAGCTGCCAAATCATTCATATTATCGGAAGCTCTTGTCAAAGGATTTTACCTCTGTT
GGACCTAAAGCTTTCAAATCGGAACCTGAAAGGTAAGGCGCGTTGGTTAAGTATCTCATTCCACA
AAAGTTGCACAAATCTCTTAAGACATGAGAATAGGAAGGCGTATACCTTACGTACTTTTTATTAG
CCGGTGTGTTGATGATCCTCGTGTTATAATTTCTATCTATTAGTTGATGATCGAGCTCTTTATGA
TTGAATGAAGTGAAAGATCAAACTCAAAGGGCTCTCCCTTTATCG
Right flanking sequence: Indices 38105 -- 38604
AAGCTCCTCCACTTTCCTCCTTCCTTTGCTAACGCTCCTCCCTTTGACCAAAAACACAAAAGACG
GTGCATGAGGGAGAGAAAGATGTTGCTCTCATACCAGATGCTTTGAGCAAACTAGCCTATCTCTC
GGCAGGATGGTGTGCCCAAACTGTCATTTCATTCGAGGCGGGATCGGAGTAAGGGGCGAAGTCTC
GAGCATCGGTACTCGCAGCCTTTAGGTTTAGGTAATCGTCAGATTTCCAAAGCCGACAGGCCTTC
ACGCCCCGACCCTCAGATGCGGGGTTCACTGAGCAAAGGAGTCGGCAGATGTTACATTTTTTTAG
ACTCCACCTTCGCGAAACTACTAAAGAGAAGGCTAACAGTCTTTAGCGCAGCTTATTAGGGATTT
CCCAACGGAAAGGCTTTGTCGAACCCTCTTACGTTAACCTACCTTCTTGCCAGCGAAATAAAATT
TGAGGTCGCGCATTCAATGACTGCTCTAGAGCCGACTTATTCGGG
Found at i:77302 original size:16 final size:16
Alignment explanation
Indices: 77277--77316 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
77267 AAAGTGGAAA
*
77277 CTTTCCGCGGGATCCT
1 CTTTCTGCGGGATCCT
*
77293 CTTTCTGCGGGATGCT
1 CTTTCTGCGGGATCCT
77309 CTTT-TGCG
1 CTTTCTGCG
77317 CTACGATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.05, C:0.30, G:0.28, T:0.38
Consensus pattern (16 bp):
CTTTCTGCGGGATCCT
Left flanking sequence: Indices 76777 -- 77276
GGGCACTACTAACCAAGCCAAGCCCAGTTCCCGCCGATAGGCGCAGGTAGCTTGCTTCCAAGCCT
TGCCTTATATGATAGTTGTGGCCATGGCCCGAAGGAGCCTTAAGCACTTGTACAATGCTTCAAGT
CAAGGCTCCCCCCCACTCGTTGCCCAGAGCCTTTACTTTCCATGTTTTTAGTCAAATGCGCGCTA
GCGCGCTACAACTAGCACTTTTTTCTCTGAGAGGCTCGCTTCTTCCCGCCCCTTATTGAAAAAAA
AAGCGCGTTAGCGCTTTTACTTTTATTTATTATATAATACCTTCTTTCTACTTCTTTCTCAAAGT
AAAGCAAGCAACCTTTCGCCTTTATTTTTTTGAGGAGATATAAAAAGAAGCAACCTTACTAAGCA
AACGTAGGCTTGGGCTCGAAAGCAAGAAGCAACGGCTTTCGCGCTTGTTGGAGCTATTAAGCATC
TTAGACTATTCCATTCCATTTTGCAGCTGGACAGAAAAGTGGAAA
Right flanking sequence: Indices 77317 -- 77816
CTACGATGGATTTTTTTACTCTTTAAGTGCGCCACTCCTTCTTTTGTCCTGTATCTGTAGCTGCT
TTTCCCGCACTCTCTTTTATCCCGCCGAAGGTCCCCCTTACGTAATAGGGGTTAAGTTAAGGGGG
GTGCACACCGTGGTCAAATCTGCATGAAAAACCGCGGGGAATCCTTAGTATTAAGTATTATGCTC
CCGCACCCCCTATCTCTTAAAGGCTCTGCGCTCCCGCATTCTGATTGATCCTGTGCAATGTTGTA
ATCCTGCTGTTCCTTTATCCCCCGCTCCGCAGCTGCTGGAGACTTAGTCAGATTTTTAGCCTTTT
GCGGTACTGATTGATGTTATGGGGGATTACTTGGGTTGGCCGGACTGTTTGTTTGCGAAGGCCGA
AGGACTAAAAAATGAGGTTTTTGATGTTATTGGACAGAATTGGTGCCGTTTTCCCACGCCTCCTT
TTCCATAATATGATTATGAGCTGCAGAACGCTTGAAGCTGGAATT
Found at i:124868 original size:24 final size:24
Alignment explanation
Indices: 124823--124868 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
124813 AAAAAGAAAC
* *
124823 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
124847 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
124869 AGAATACCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 124323 -- 124822
GAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCCAACCACACCGGAATGG
ATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCAAGGAGACGAAAAG
CTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACAGAACTTTTCAAAA
TTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGAATTCTTCAAATTT
TAGGCGGGATGGGGATTGTAATTATTTAGACTTCTCGAGGTATAATGACAGACCGGGAGGCTAGA
TTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTAATCCTTCTGCGAATTAGATCCTAA
ATTGACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCCTCCCCCATTAGTTG
AGACTTCAAGGAGGTTTTCCCCGGAATGAAAGAAAAAAAAGAAAC
Right flanking sequence: Indices 124869 -- 125368
AGAATACCAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGA
TGTAAGGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGAAGAGGGGGTACAAGAAGAG
GGACACCATTTGCTGCTCAAACTGCAGCGGGAAATGCTGTACAGTAGTGGAGCAAGGTATGCAAC
GAGCGGAAGTTATGAAAAAGGGTCCAGGTCTCGGAATCCCATCTTCCAAGGTCAGGAGCCACGGA
GCCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATA
TCCCAACTATTCTATATCCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAA
GGAATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCACTCCTGTGCTATCAAAGTAGAGA
TATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACTTT
Found at i:194592 original size:15 final size:15
Alignment explanation
Indices: 194569--194615 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
194559 TAGTTCTTAG
194569 TCTTGCTTCTGTAGC
1 TCTTGCTTCTGTAGC
* *
194584 TCTTCCTTCTGTTGC
1 TCTTGCTTCTGTAGC
194599 -C-TGCTTCTGTAGC
1 TCTTGCTTCTGTAGC
194612 TCTT
1 TCTT
194616 TCACCTTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 10 0.38
14 2 0.08
15 14 0.54
ACGTcount: A:0.04, C:0.30, G:0.17, T:0.49
Consensus pattern (15 bp):
TCTTGCTTCTGTAGC
Left flanking sequence: Indices 194069 -- 194568
TATCTTATATCCAGTAAATATTCATCGCTTATCTTGCTTTTGGTATAGGAATATGCATACAGGGA
TGAAGCTTAAGAGTTCAAGATCTTTCTCGCTCTGTCCTCCGTTGCTCAGTAGCTCTCTCTGCTTT
CATGGCAGTTAGCCGGTTCTCGGTACAGTCTCTTCGATCCCATCCCGCCTAACCAACTCAAACTA
CTAATCCTAGCTCTTTCTTACTGCCTTAGTCTTGAGTTCCCACCCGGCTCTCTCAGGTTTCACAG
CTCTAGCTAGTAGACGGTGCTGCTAATCCTTAACAACTAACGGTTAAGCAGGTAAGCGAAAACGA
AGGAAGCTTGTTCCCGGTTCGTCGTTCCAAGCTTAGATTTGAGATAACTGTAAGAATTCCTGCAT
AGCAGGGTTACCGCAGCTAAGGAAGCCTTGCACTTAGAACCGAGGGATAAAGTCTCGAATATACA
GAAAGACTCCTAGCTAGCTAATCCTTAAGCCGAGCTAGTTCTTAG
Right flanking sequence: Indices 194616 -- 195115
TCACCTTTCTTCGCTTCATTCGTTGCATTCTAAACTAGGGATTTGGAGCAGAAAGAGGAGAGGAT
GCTATCGAAGCTGTCGTATACCGCTTGCTGATTAGAACAAAGAATAGGTATTTAATACATTTTAC
ATTGTTTTTGGTTGACCGAGAAAGAGGGAGCTATAGCTTATCTAAGGAGCGAGCTAAATACCAGC
TTGCACTAATGGCTTCTTGGTGGCATATCGAGAGCACTTTCACAAAGTGATATTCTAAAGTCATG
AGATTAAGTTAGTGAGATGCTATATCAATCAGTCTCTTCTTATTATTGTATATCTTTTCAACCAA
CCGCTGGAATATTCAATCTATCCCTATACCTAGATGGGATAAAGAAGATATTATCCTTGCTTTCA
GTTACTTCTTTCATCCATCCGCTAAGGTTCTTTGTTTGAGTCACTAAAGAGAAAGGCTTTAGAGG
AAATCCCACGGATATTGGGAATCATAGGAGAAAGATAAAGGATAG
Found at i:207253 original size:28 final size:28
Alignment explanation
Indices: 207222--207285 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
207212 TTTCACTGAA
207222 TGAAGACCA-AGGAAAGAACTTCAAATGT
1 TGAA-ACCATAGGAAAGAACTTCAAATGT
*
207250 TG-AACCATTTGGAAAGAACTTCAAATGT
1 TGAAACCA-TAGGAAAGAACTTCAAATGT
207278 TG-AACCAT
1 TGAAACCAT
207286 TTAGCTATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 4 0.12
27 2 0.06
28 27 0.82
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (28 bp):
TGAAACCATAGGAAAGAACTTCAAATGT
Left flanking sequence: Indices 206722 -- 207221
CCGCCGACTAAGCCCGGACTCTTTCGCATCGCGCTAATTCAGTGCCAGCCGTTGGTGAAAGACCT
GCATGGAGCCGAGCCCTTCTCACCTACCTGCTTTGGGGAGAGTTTGATCCGGACAAAACTAGTGG
GTGTCGCCTCCTCGAAGCAGCTCCCTCTCGCCCCGATTGATGAAAAAGAAATAGAATTGGAAAAG
TCCAAAGAAGACTTTGACCCCGTAAGCTAAACTGGGAATCTCGTACGAAACTGAGAATGTGATCA
TGACAGCACATCGAAAGAAAGTGGCTCGTGGCTTTCATATCTTGGTAAATAAGAGATCGATCCCG
TAGTTCAATCCTGGGAAGGGTCAAAAAGTGTATCCACCCGGTCCGGGGAAGGTGTGTTCAATCCT
CTCACGTTCTTGGTCAAGTAATGGCTCTAGCTTCATTCTCGCTTTGGGATCATCTCGCCTTCGTG
GGTCTCCGCTTTCCAGCTGCGGAAAGCTTCACTCCTTTCACTGAA
Right flanking sequence: Indices 207286 -- 207785
TTAGCTATGGATGCTTAGCGGGGGTTGAGAGATCCCTTGTCGCCGACAAAGAAAAGAAGGTAGAA
CCAATGGGCCCTTAGTCCGCCCCTTATGTAGTACATAGAGGCGTCGCGAAGGAGTGAAGAATGCC
CCTTTCCTCCCGGAAGAACTGGACGACCAAATACAAGCACTGACTTCAAAAAAGAGATAGCCTGC
CTCTCTCTCCTTTCTTGCAGCTTACGAACCCCCCGAAAACAAGATTGACGCAGAAAGGTAGCGAA
CTCTTTTTGCTCAATAGCTAAATAAAGAGAAAGCAAACCACCCGAAGAGGAATGAAAGCTTCAAA
TCGAGTTCTCTCTAGTAAAGAAGTGGATTTCCTGAAATGAAAATAAGGAAAGGCAAGAAAAAAGT
ACAGAGGTCTTGCGAGGCGGTCGTTGGGATCGAATCTTCCTGGCAGCGGGCGAGAAGACCTCAGT
TGGAGACGGGGCGGCTTTCTCTATTTCACGAAGATGTCATTTTCA
Found at i:207286 original size:28 final size:28
Alignment explanation
Indices: 207232--207287 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
207222 TGAAGACCAA
207232 GGAAAGAACTTCAAATGTTGAACCATTT
1 GGAAAGAACTTCAAATGTTGAACCATTT
207260 GGAAAGAACTTCAAATGTTGAACCATTT
1 GGAAAGAACTTCAAATGTTGAACCATTT
207288 AGCTATGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (28 bp):
GGAAAGAACTTCAAATGTTGAACCATTT
Left flanking sequence: Indices 206732 -- 207231
AGCCCGGACTCTTTCGCATCGCGCTAATTCAGTGCCAGCCGTTGGTGAAAGACCTGCATGGAGCC
GAGCCCTTCTCACCTACCTGCTTTGGGGAGAGTTTGATCCGGACAAAACTAGTGGGTGTCGCCTC
CTCGAAGCAGCTCCCTCTCGCCCCGATTGATGAAAAAGAAATAGAATTGGAAAAGTCCAAAGAAG
ACTTTGACCCCGTAAGCTAAACTGGGAATCTCGTACGAAACTGAGAATGTGATCATGACAGCACA
TCGAAAGAAAGTGGCTCGTGGCTTTCATATCTTGGTAAATAAGAGATCGATCCCGTAGTTCAATC
CTGGGAAGGGTCAAAAAGTGTATCCACCCGGTCCGGGGAAGGTGTGTTCAATCCTCTCACGTTCT
TGGTCAAGTAATGGCTCTAGCTTCATTCTCGCTTTGGGATCATCTCGCCTTCGTGGGTCTCCGCT
TTCCAGCTGCGGAAAGCTTCACTCCTTTCACTGAATGAAGACCAA
Right flanking sequence: Indices 207288 -- 207787
AGCTATGGATGCTTAGCGGGGGTTGAGAGATCCCTTGTCGCCGACAAAGAAAAGAAGGTAGAACC
AATGGGCCCTTAGTCCGCCCCTTATGTAGTACATAGAGGCGTCGCGAAGGAGTGAAGAATGCCCC
TTTCCTCCCGGAAGAACTGGACGACCAAATACAAGCACTGACTTCAAAAAAGAGATAGCCTGCCT
CTCTCTCCTTTCTTGCAGCTTACGAACCCCCCGAAAACAAGATTGACGCAGAAAGGTAGCGAACT
CTTTTTGCTCAATAGCTAAATAAAGAGAAAGCAAACCACCCGAAGAGGAATGAAAGCTTCAAATC
GAGTTCTCTCTAGTAAAGAAGTGGATTTCCTGAAATGAAAATAAGGAAAGGCAAGAAAAAAGTAC
AGAGGTCTTGCGAGGCGGTCGTTGGGATCGAATCTTCCTGGCAGCGGGCGAGAAGACCTCAGTTG
GAGACGGGGCGGCTTTCTCTATTTCACGAAGATGTCATTTTCAAG
Found at i:212236 original size:27 final size:27
Alignment explanation
Indices: 212206--212257 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
212196 TATGGGTAGG
*
212206 AGTCAAGTGGAACATAGAATTGTTTGT
1 AGTCAAATGGAACATAGAATTGTTTGT
*
212233 AGTCAAATTGAACATAGAATTGTTT
1 AGTCAAATGGAACATAGAATTGTTT
212258 ATTGACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
AGTCAAATGGAACATAGAATTGTTTGT
Left flanking sequence: Indices 211706 -- 212205
GTTCCCCAGGCCAGCGGGGTAGGTGCTTAGCTTGTTAGGAACCGAAGGCTGTTTGCGTACTTGCT
TGTTCAAGCCTGAAAAGAAGCCAATAAGGCGCAGTTACAGCGGGAAAGGGTTGAAGTTGCGAAAT
CAGGCATAGGGTGTACGAATAGCACTGATCGTAGACCATCCAGATGCTTATGGGGCAGAACAGAC
CGATTGATTAGTTCCCGTGATCGTAGATCCACTTTAGCTAATGCAACTCGGGAAGAAGCTGCTAA
GATCCCGTCGCTTACAAATGCTCCAGCGTGAAATAAAGACTTTTTTAGGTACAGGGATAAATTCG
TACAATAGTGCGAGGACGGAAAAGAAAACGACCTTCTTTGACGCATGTTCTCCCAATAGTGCGAG
TACTGACTTGTTCGTAGAAAAGAAGAGTCCTGACTAGTATACCGTCTGCTATTCTTACTAAATCT
CAAGATTGAATTGGTAGTTGTACAATTGAACACGGTATGGGTAGG
Right flanking sequence: Indices 212258 -- 212757
ATTGACAAGTTTGTGGGTATGTGGTTTTTGCATTTCGTTCAATAGGGGGAACACGAGACCTATAA
AGAAAGGGGAATACAGATAAATGTTTTTTAGATTTTGACGCATTAGTAGGATTCATTCTTTTCCT
CTCCACAGATACCGAGATCTATCCTTAGATAGACGCACTAGAAAGTTGAACAGGAAAGTTGAGAC
TGGCTTGTTCATGAGGCTAGTTCAGGAATTAAGGTTTTCTAGTTTCAATCTATAAATACCGTTTA
GCCCTCACTCGCCGGTGGGCTCACAACACTTGCTTTGTTGATTGAATCGATCGGGATGCCCTCGG
GGGCATCCCTCCCTGTTGTTGTTGATTGAACAGTGGAGATTCTCATACTTTTTAGCTGACTTCTT
GCTTCCTTCGTACATTAGCTGCACTAGACTGTTGAGCTATAGAGTTTAGACTGACTGACTCCATG
GCACTAGTTAATAGCTATCATAGATCGTTCCGGCCAGTGATCATT
Found at i:223238 original size:18 final size:18
Alignment explanation
Indices: 223198--223240 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
223188 ACCGCCCTGC
223198 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
223217 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
223234 CATAGTC
1 CATAGTC
223241 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 222698 -- 223197
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTAAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 223241 -- 223740
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:224877 original size:21 final size:21
Alignment explanation
Indices: 224851--224894 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
224841 ATATCTAGTT
*
224851 TGAATTCTAAGACCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
*
224872 TGAATTATAAGGCCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
224893 TG
1 TG
224895 CTCTCAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTATAAGACCCTCTTTA
Left flanking sequence: Indices 224351 -- 224850
ACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACT
GCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGAT
AGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTT
TCCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTT
AGTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAG
GGGCTTATGCACTCCACGACTTTCTTATGTTATTATAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 224895 -- 225394
CTCTCAAAGACTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTCAAGGTAGAATT
AGGAGTAGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCACTAGACTGACATTCTCATTTCGC
TTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGATTGAATTGCGATA
GTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTTTACTCCCTCTTT
GAAGGTCGAGCCTATATAAAAGTCAATATGGTCTAGCTAGTTCTCACTTCTCCCCCTATAGTTAT
AGCAGTCCTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCATTCCTCTCCCGT
AGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTCCTTACTTTCTTT
CCCACCGTAGAACTCCAATCGAAAGGGGAATCTCCCCTTGGTCCG
Found at i:289222 original size:19 final size:20
Alignment explanation
Indices: 289198--289243 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
289188 CCTTTCTATT
289198 TATAATAG-A-AGAAGTCTAA
1 TATAATAGTATAGAAGTCT-A
289217 TATAATTAGTATAGAAGTCTA
1 TATAA-TAGTATAGAAGTCTA
289238 TATAAT
1 TATAAT
289244 TAGCCAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.21
20 4 0.17
21 7 0.29
22 8 0.33
ACGTcount: A:0.48, C:0.04, G:0.13, T:0.35
Consensus pattern (20 bp):
TATAATAGTATAGAAGTCTA
Left flanking sequence: Indices 288698 -- 289197
TTCCTATCGATTTCCGATGGATAACAATCCATCTTTCTCGCTTTCGCTCTTTCTCCCAATCAGTC
GCGAGGGTTCCGGGCATGAGAACGCAAGTGCCGGAATCAAACAAAAGGTCCGAACGTCCGAGGAC
GAAAGAGAAAATGCTCCGCGGGGAAGTCGTTTCCATCTAGGATAGCGTATTCGTGCCGGTTAGAC
GTCGGCCATGAAATCCATCACTATACCGAGCAAATCATGGGCATTCACATCTCGGTCAAAGGGAA
CTGTGCGCGATTCTCTCGTGAATCGCCTTCAGCAAGGTATGGCATTCAGGGTCTTAACCCAGGGA
TAAATCTTTCTTCATAGATACAAGACATTCGTTGCTGATCTAAAAAAGATCTTCTCCCGTGGGCG
TTAGCGGACGTTTTTCATTTTTCACTCGGTCCTGACTTCCCAAAGCAAAGGTTTTTTTTAGGTTT
ACTTTGGAAAGGCGCTAAACAGGCCTATAGGTTCGCCTTTCTATT
Right flanking sequence: Indices 289244 -- 289743
TAGCCAAATCGTCTGAAGCATGAACAGAATCGCCTTTGTTCCGAAGGCCTAGCGAGTTAAGCGAG
TTCCTTTTTTCTTTTTTCAAAGGCAGTCCTTTTCTTTCCCCGGACCGATGACTCGCTTGTTCAGT
ACTGCTAACTCTTATTGGAGGATTCCGTCCCCTCGGGACTACCAGTAGCTTCGGTTGTTGAATCT
CGTGCAAGTTAGGTTGTGGTTGTATTGGCTGCAAGCGGAACGTAGGCGCTTTAGGTGTGTGTTGG
CCATGCACTCTCGCGTCGTGTAATGTCGTATGTATGATAGAGGTGGTGTGGTGATTGACCTCAAT
GCTAATGGTTATCCCCAAGGTTCAACGAATGAATGAAGCTATGCTATGATCGTACCCGGATAGAG
ATGATAGTCTTCCTCTGATGTATCCAAGCCGGCCATAATAGAATCGATAGGCGAAGCAGCCAATA
GCAGTCTGTTCTCGCCTATCGATAGATAGCAGGTTGCTTCCAAGC
Found at i:357775 original size:48 final size:48
Alignment explanation
Indices: 357704--357795 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
357694 GTATTTTACA
*
357704 AGTAACAGCATACAAACCATGTTTTCCACAGGTAACAGCATACGAACT
1 AGTAACAGCATACAAACAATGTTTTCCACAGGTAACAGCATACGAACT
* * *
357752 AGTAAGAGCATAGAAAGAATGTTTTCCACAGGTAACAGCATACG
1 AGTAACAGCATACAAACAATGTTTTCCACAGGTAACAGCATACG
357796 CACGAGGGCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (48 bp):
AGTAACAGCATACAAACAATGTTTTCCACAGGTAACAGCATACGAACT
Left flanking sequence: Indices 357204 -- 357703
ACAGATGCTTTATTATAAAGCGCCTATCTATACTGTTCACGACAACTTTATAAGTTCCACGTATC
ATAGCAAAAAAATTGCTGGTATTTATAATAATGCAATTATTAGTCTGGGGCGTCCTCTAAGAATC
ATAAATGAGTTCATTTATTTGAATGTCATGAAACATATTTATGATAATATAGATAGAGAAATCTC
AGATGATCTTATGGATCATGTAATTCCAAGAGATTCATTACTGTATTATTTGGAAGAAAATATCC
CAGAAGACATACGCCTTTCTTCTTCTAAGAGGAAAATATGGGATGATAAGATCCAGATTATTTTG
AACTCTTACGATGCCTATACTCGTCTTGTATGCGGAGAGTATGAAAATACTAACGATGGTTGTCG
TATGCATATAAATAAATATGAGGATTTCCTTTCTATGATGAAGAGAAAGTCCGAGCTTCCCTTAT
ATAGCACGTACTTTTAAAGAAAAGAAAAAGCCAATGTATTTTACA
Right flanking sequence: Indices 357796 -- 358295
CACGAGGGCATACTGTACATACAGCGTATATATTGACAAGTTCTTGAATCGCGTCTTTGCTAGTA
TAGAAAGGACATGGGTGCAGGATCCGCATAGATGGTTAATCATAGCTAGTCATAGCTTCCGCGAG
CCTAAACCTTCTATTAATGATGTGGATCTACATGCTCTATGTATAATGGATCTCTTACACCAGTT
TGCTTACACATCCCTCATAGGTTACGCAAAATTTGGGATTTTACTTACCACGCTGCGATCTTACG
GGGAGGAGATAACTTTTTCAATAGGTACTGCTATCCCCTTGACTGAGGAGGGTGGTAATTTGCTT
CCAAAAGCATGGGTCTATTCTCAGCTCTATAAAGTCCTTTTAAAATCTTCAGAAATTTATGAGGG
GGATGAAATAGTTCGAGTCACTATCAGAGTCTATATGGAACAGGATAAAAAGCTGGAGAGGCCAA
CCCTATCTGAAGAAGAAAGACAGAACTTACTTCGTTCTGTTCTTT
Found at i:367132 original size:50 final size:54
Alignment explanation
Indices: 367019--367153 Score: 154
Period size: 50 Copynumber: 2.5 Consensus size: 54
367009 ACCAACTTTA
367019 TCGATTCCGTAGGACAGATTATCGATAGGCTGACCTTATACTTAAGTAGTTGAATAATC
1 TCGATTCCGTAGGACAGATTATCGATA-G--GACCTTATACTTAAG-AG-TGAATAATC
*
367078 TCGATTCCGTAGGACAGATTCTCGATA-GA-CTTAATACTTAAG-G-GAA-AATC
1 TCGATTCCGTAGGACAGATTATCGATAGGACCTT-ATACTTAAGAGTGAATAATC
* *
367128 TCGATTCCGTAGGATAGATTTTCGAT
1 TCGATTCCGTAGGACAGATTATCGAT
367154 TCCGTAGGAC
Statistics
Matches: 72, Mismatches: 3, Indels: 11
0.84 0.03 0.13
Matches are distributed among these distances:
50 28 0.39
51 3 0.04
53 1 0.01
54 3 0.04
55 11 0.15
59 26 0.36
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (54 bp):
TCGATTCCGTAGGACAGATTATCGATAGGACCTTATACTTAAGAGTGAATAATC
Left flanking sequence: Indices 366519 -- 367018
CACAGGTAGACTTAAAATAGGAAAACTATTAAGCAATTCATCCTTATTTACATGAGAATTCGGAT
TATTTGTGGGGGGAGTATAAGTCAAAGGCTGGATTGGCTTAGGAATTGACCTTCGCAAATTCAGA
CCTCTACGCTTAGAGAACGTATCCTTTTTTCCGAAACGATAGCTTTCCGGCAGCATTCCACCATT
ACCTGTGTAATATATATCATTTCTAGTGTGATTAACTCTCAATCTGTCAAATAACAATTTCATTT
TTCTTTTATCATCTATTGATAGAGTAATACTCGGGATTTTCTCTCTGCTTATGCCCTTACTTTCT
TTTTGAAATAGGACTACTTGGATAGCTTCTCGCTCGATAGGCTGACCAACAGGACAGATTCTCGA
TTCCGTAGGACAGATTATCGATAGGCTGACCAACAGGACACTATTCTCGATACTTTAGGCTGACC
TAAAGGACAGATTCTCGATTCGTAGCTACCTGATGACCAACTTTA
Right flanking sequence: Indices 367154 -- 367653
TCCGTAGGACATAAGAGTATATGAGGTGCCTTTACCCACAGAAATACTAGACTCAACCCAGACCA
TGAGAGGAACAAGGCACAGAGCCATGTTTATTCGGCCTTGGGACAGGCATTATGGGATTTTACCC
GACGGGGGGCTGCCTTTACCCTGAGCCAGTATTTCTCCCCTAGAAAATGGTTTAGGATAACCTCC
AGGGGACAGACAGCGGTATTACTCTAAAGACCCTGGGGGAGGGGGGGTGACTTTTTTCTTTACTC
AAAAGCCTGTTCAAGCCTTCTTTAATGGTTAGACTCTAGCCTCTAATAAAGATCGAGATAAGGGC
ATTTCTTTGAGAAAGTATAGGAGAAGCTTGATGCTTCAGATCCAACCCCGACAACTCAAACTTGT
TTTTTGGCTAGCAAGAAATAGGCACTTGTTCTTACCTATCTAAACTCTATTTTGGCTTGCTATAA
GATTAGTACTGGTTCTTACCATCAATCTCTTTCCTATCTAGAATG
Done.