Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: BK059358
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 482735
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Found at i:33138 original size:19 final size:19
Alignment explanation
Indices: 33114--33151 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33104 ACTTATTTCC
33114 TCTCGACTATTCGACAATT
1 TCTCGACTATTCGACAATT
33133 TCTCGACTATTCGACAATT
1 TCTCGACTATTCGACAATT
33152 CTGTCCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTCGACTATTCGACAATT
Left flanking sequence: Indices 32614 -- 33113
ATTGCCGAACATTCCCTCAACTGTTTGAACGAGCTGCCCGCATGCAGAGGAGTATAAAAGACGGG
TCTATCACTTTCCTCAGGAACAGAAATAATGGGGGAGAAGACAAGCCGAAGAAGACCCTAAGGAC
CCAGCAGCCAACTCAAGAGGTTACCATCACTCCGGATCAAATTAATGCGGTTCAAGCACAGCAGA
ATGCACAGAGACAACAGAGCACCCGGAATCAGCAAGCCATCCAGGGGGCCGGGGCCGTCCCCCAA
CCCACTCAAAACCCTCTTACCCAATCGCAACCGCAAAACCCAGCGCAAGCTCCGCCCAGACCCGC
TTATAACAACGCTGCGCCTCCGGCCAATTATGATCCTCAGCAGCAACAAGGTGCTCCTGGGGACC
CAATAGAGCTCACTACCCGCCATTACCCCTACCCTATTTTCCATCCTTCTGGCCTGGAAAGCCAT
TTCTCTGCCCAGAGATAAACCACTCCCCTGGCCAGACTTATTTCC
Right flanking sequence: Indices 33152 -- 33651
CTGTCCATTTCACCGATACGCGGGCCATACCATCGAAGAGTGTCATACTTTGCGTGATGTCATCT
ATGACATGAATGATTAAAATCGTATCAATTGGAACGAAGTTAAGGCATACCTGAAAGCCGCCAAT
GTCACTGAAGCGTATAATTGGGGGATCTATACTAATCCAATGCCACAACATCAAGGGGGACAAGT
CACTACTCAGAGACTTACACCAGTACAAACTAATCCAGGACCTTCTGCCAGCGCTAACACCAGCC
GAGCTTGCACTGCCGCTCGAAGAGAGATGCCTGTGAGACCCCCTCGACGTTCTGTAATTCGAAGG
AGGTTCTGAGAATGAAAAACTCCGAAGTCACTTTCTTTGTCCCCAGGTAGCGCTTGCTTCCAAAA
GCAGACGAAATCACTATGGAACCGGACCTCCTCGCTGCCGCTCAATTCATTACTTTTAAGAGGCA
AATTCGCTTTTTTAGTAAGGGTGGGTGGAAAAGGTGAAGAAGGAA
Found at i:41454 original size:3 final size:3
Alignment explanation
Indices: 41448--41504 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
41438 ATAATAAATA
* *
41448 ATT ATT ATT ATAT ATT A-T ATT ATT ATTT ATT ATT ATG A-T ATT ATA
1 ATT ATT ATT AT-T ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
41493 ATT ATAT ATT AT
1 ATT AT-T ATT AT
41505 AAAAGATGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 3 0.07
3 33 0.73
4 9 0.20
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Left flanking sequence: Indices 40948 -- 41447
GCTAACCGGTACTACATTCGCCAACCAATCCGGATAATGGATGGGGGTGATGAATTCCACTTCTA
TCAGTTTCTTCATCTCTTCCTGTCCCTAACGGTCCAGATATTTCATAACCTGTCCCTGCAGTGAT
ATGGCAGGATGCATTTCTTGAAATTCCTGCTTTACCGGTTTTGCCCCTCCCTCATGAGATAGCTG
ATCATCTTTTTGATATTCAAAAGGTACTCTCATCCAGACAAAATGGAAGATCCTCCTTTCATTTC
CATGTGGGGAGGAGGCAGCTGTGCTGGCTGATTGGTCCTCATGTCGATTGGAAGAATGTGCAGGA
CGGTCTGCTGAAATGTAGGGCTCGGGGGGGACATATACTGACTCGGCGATACGGGAAGTGATGGT
GTTAGTGGGGGCTCCGGAGAACGGGGTGGAGAGACCTTTTTAAGTATTGAAGAGTCGTCTTCGGG
GGCGAGAAGCATATATATATAGAAATAATAATATAATAATAAATA
Right flanking sequence: Indices 41505 -- 42004
AAAAGATGAACTCCAAATCGCTGATGAGCTACCCGATTCCCAACCAACATCTGCGTACGCGAAGA
AGGCTTATTGTTAGTCGCTTGAGAGCTGTCCATGCCAAGCGTATGATCGATCACACATCTGCTCT
TCTCATTCTCTTCTCTATGCTCCAAACACAAAAAATGAATATTCACTGGAAGGGGAAGCAGTACA
GTACTAAATAGTATGGTTCAAACCAGATGGAAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACT
TCTCTTTGCTCAGGACTCCCTTTGACTTTACTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGT
GGGCCAGGCAGACATAGGAACTTCGTAAAGGCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCT
TTCATTCTGCTTCTGAAGCTTCAACTGTTCTAACAACACCTCGCACATGGAGATGGGCACGTTCC
ACTCGAAAATATACTTCCACTATTGAGAGAATTGTGGTTGGTAAG
Found at i:41471 original size:18 final size:18
Alignment explanation
Indices: 41448--41505 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
41438 ATAATAAATA
41448 ATTATTATTATATATTAT
1 ATTATTATTATATATTAT
*
41466 ATTATTATTTATTATTATGAT
1 ATTATTA-TTA-TA-TATTAT
*
41487 ATTATAATTATATATTAT
1 ATTATTATTATATATTAT
41505 A
1 A
41506 AAAGATGAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 13 0.38
19 5 0.15
20 5 0.15
21 11 0.32
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTATTATTATATATTAT
Left flanking sequence: Indices 40948 -- 41447
GCTAACCGGTACTACATTCGCCAACCAATCCGGATAATGGATGGGGGTGATGAATTCCACTTCTA
TCAGTTTCTTCATCTCTTCCTGTCCCTAACGGTCCAGATATTTCATAACCTGTCCCTGCAGTGAT
ATGGCAGGATGCATTTCTTGAAATTCCTGCTTTACCGGTTTTGCCCCTCCCTCATGAGATAGCTG
ATCATCTTTTTGATATTCAAAAGGTACTCTCATCCAGACAAAATGGAAGATCCTCCTTTCATTTC
CATGTGGGGAGGAGGCAGCTGTGCTGGCTGATTGGTCCTCATGTCGATTGGAAGAATGTGCAGGA
CGGTCTGCTGAAATGTAGGGCTCGGGGGGGACATATACTGACTCGGCGATACGGGAAGTGATGGT
GTTAGTGGGGGCTCCGGAGAACGGGGTGGAGAGACCTTTTTAAGTATTGAAGAGTCGTCTTCGGG
GGCGAGAAGCATATATATATAGAAATAATAATATAATAATAAATA
Right flanking sequence: Indices 41506 -- 42005
AAAGATGAACTCCAAATCGCTGATGAGCTACCCGATTCCCAACCAACATCTGCGTACGCGAAGAA
GGCTTATTGTTAGTCGCTTGAGAGCTGTCCATGCCAAGCGTATGATCGATCACACATCTGCTCTT
CTCATTCTCTTCTCTATGCTCCAAACACAAAAAATGAATATTCACTGGAAGGGGAAGCAGTACAG
TACTAAATAGTATGGTTCAAACCAGATGGAAGGGCAAGCAAGCGGACGTAGCTCTCAAACTACTT
CTCTTTGCTCAGGACTCCCTTTGACTTTACTAATAAGGGGATCGAACTTTCAGAAGGGTAGGGTG
GGCCAGGCAGACATAGGAACTTCGTAAAGGCAGTCAAAAACAGAGGATAGAGAGCGCATGAGCTT
TCATTCTGCTTCTGAAGCTTCAACTGTTCTAACAACACCTCGCACATGGAGATGGGCACGTTCCA
CTCGAAAATATACTTCCACTATTGAGAGAATTGTGGTTGGTAAGA
Found at i:92731 original size:105 final size:105
Alignment explanation
Indices: 92549--92758 Score: 420
Period size: 105 Copynumber: 2.0 Consensus size: 105
92539 ACCACCCATT
92549 GATTTTGCACCTTCTAACATCTCGAGACGATAATTTGCTCGTCACGTTCCTTCGCTGCTCTTTCC
1 GATTTTGCACCTTCTAACATCTCGAGACGATAATTTGCTCGTCACGTTCCTTCGCTGCTCTTTCC
92614 TGGATTCTTCGTCGATTCCTCTTCCCCACCCCGCGATCCA
66 TGGATTCTTCGTCGATTCCTCTTCCCCACCCCGCGATCCA
92654 GATTTTGCACCTTCTAACATCTCGAGACGATAATTTGCTCGTCACGTTCCTTCGCTGCTCTTTCC
1 GATTTTGCACCTTCTAACATCTCGAGACGATAATTTGCTCGTCACGTTCCTTCGCTGCTCTTTCC
92719 TGGATTCTTCGTCGATTCCTCTTCCCCACCCCGCGATCCA
66 TGGATTCTTCGTCGATTCCTCTTCCCCACCCCGCGATCCA
92759 TAGTATATTC
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.34
Consensus pattern (105 bp):
GATTTTGCACCTTCTAACATCTCGAGACGATAATTTGCTCGTCACGTTCCTTCGCTGCTCTTTCC
TGGATTCTTCGTCGATTCCTCTTCCCCACCCCGCGATCCA
Left flanking sequence: Indices 92049 -- 92548
CTTGATAGCATTTAAGAGATTTCGGAGAGCGTTGACATCGGCTTCCGGGGACTGATACTCAAAAT
TCTGGGCCATTTCATCCGCAGATCCGAGAAAGTCGAAGCTTTCTCTGCCTCTTGCGCAGTATTTG
CCGCAGAAAGAAGCCCATACCCCCACAATAATGTTTGCAAAATTTTTTTAGGAGTAGGGCGTCAG
CCTTACGAATTTGCTTTCGTAGTTTCTCCTTTTGAGCATCATTATCGTCGTTAGGAAGGCCGGGG
GCGGCGGGCCCGCGTGGAGCCGGGGTGCCGTCGGCACCAATCCGTTGGTCTTGCGTTTCCATAAG
GTAAGTCCAAGCCGACCTCCATAAAGCGCGAACCAACATCCGTGATACGAAAACAAAAATCAGAA
GTAGGACCAAACCGAGAGTTAGCAGTATTTCCAAGGATGGACTTCGCGCTACGGAATGAATCGAG
GAACTGAGGACATTTCCAATACCGAAAAAATCGGCACCACCCATT
Right flanking sequence: Indices 92759 -- 93258
TAGTATATTCCATTGATAGAGAGCCAATTCCAATAGACTTATTGAACGTTCCCATTGGCGTGCAT
CCAGTAGGAATTGAACCTACGAATTTGCCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGG
GCGAGTGAACTAGGTCTTTTTTTGGGGTTCCAGAAAGAACGTCAAAGAAAGGTGACTTAGACTTC
TCCTTCGACTGAGACGGAGACTGAACGAGCTGCTTCGGAAAGTCATATGGGTCTTTTGGCTCGCA
ATAAAGCTAGGGTCCTGATCGAGCAAGACGTAGTCCTATCTATCTACCTCTCCAGACACAATATC
TTGAGTACCTATGATGGTGACTACATCTGCTGGCATGTGATGTTTGGACATAGAATCGAGTCCTT
GTGAATGGGCAGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTACTGACA
AGAAAGACACCAAATTCTCCTTTAGGTGCTTCAACTGCGGTATAG
Found at i:101710 original size:105 final size:105
Alignment explanation
Indices: 101528--101738 Score: 422
Period size: 105 Copynumber: 2.0 Consensus size: 105
101518 GACATGTTGT
101528 TGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCATCCATAAACCGTCACCCCG
1 TGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCATCCATAAACCGTCACCCCG
101593 GTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAAGG
66 GTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAAGG
101633 TGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCATCCATAAACCGTCACCCCG
1 TGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCATCCATAAACCGTCACCCCG
101698 GTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAAGG
66 GTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAAGG
101738 T
1 T
101739 TCCCCGTCAT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (105 bp):
TGATATTGATTGAGTTGGAGGGAGTCAGAGACTACCACGGAATCCATCCATAAACCGTCACCCCG
GTGACCTTCGTCACCAAAGCGTCACGACAGTTTCCAAAGG
Left flanking sequence: Indices 101028 -- 101527
AACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGAAAGGTCAATCCCTCCCCCCC
TTTTTTAGTCAAAAATAGAAAACCGGGCCGAACTTCTAAAAAGCAGCCCGCCCGCTTCCATAGAA
CAATATCGTGGCAACGTAGACCTAAGTGGGTTTATTGGATCCTGGGGAACCATCACAAGTACGGC
CGGCCTATAGAACGAGAATGCCGTGTCGTCCAGCGGAGCTTAGAAGAAGGTTACTCGGAGCCTAG
AAGAAGGAAGGTGACTCGCGCAGACAGCTGACTCCTTTTCAATAGAAAGGAATAGCCAAACCAAC
CCAGCTGGCTGGTCAATCTCAGTGATCTTATCGGCCGGCAAACCGGAGACGGACGACCACGGTCC
CGACCTTACCAGCACCGTAGGTTTACTAATCAATGAAGCCCCTCAACCTACTATCTTTTCTTACA
AAGTCAACCAAGCCTAACCAAACCGTCATGGTCACGACATGTTGT
Right flanking sequence: Indices 101739 -- 102238
TCCCCGTCATCTCATCTCCAGTGGGGGGCCCAAGAAGTCGGAGCACGTAGGAATGCCGACCACTA
CATAAGCCACGTCTGGCTGAGGCGAGCAACAAGCGGGGGAAAGTCAAGTAAAGTACAACAACGTT
GGGGTGGGACGCTAGTACTTAAACTAGGGTTGCTTTGGCGCGCTAATCTTACGTTTTTCAGCAGG
CTGTTAGTTGTAGCGCGCTAGCGCGCCTTCCCTCCTTCTCTCACTTCGGAAAGATTTTTCAGTAT
TTTCTTATGATGACCTGGTCGAGAGAGTACGAAACATCGGTGTAAAAGATTGAGTGGGATCAGTG
AGGTTGGTTATAGTAAGGCCTGGCCTAAAGTGCGCGGCTTACGAAAAGGTAAGCGGTTAGGTTGA
CTTTGCCCCCATTTTTGCCTTTTTCTGAATCGGAAGATCATCCAATTTTTTTTCTCCGCGGGATC
TCTCTTTCCCAGCCACTAAGGTTCCGTTCGGTCCTCTTCCCCACC
Found at i:131829 original size:16 final size:17
Alignment explanation
Indices: 131793--131863 Score: 105
Period size: 16 Copynumber: 4.4 Consensus size: 17
131783 GGGAGCCCAG
131793 TAATAT-ATAAAATAAA
1 TAATATAATAAAATAAA
*
131809 T-ATATAAT-AAATATA
1 TAATATAATAAAATAAA
131824 TAATATAATAAAATAAA
1 TAATATAATAAAATAAA
131841 T-ATATAATAAAATAAA
1 TAATATAATAAAATAAA
131857 TAATATA
1 TAATATA
131864 TATATATATT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
15 11 0.22
16 26 0.53
17 12 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAATATAATAAAATAAA
Left flanking sequence: Indices 131293 -- 131792
TACGCTATCGATTGGTATAGCTCAGAATGGTTCTTGATCGATTCCACCGGAACTTCAAAACGATT
ACTGGCCGATGTTCCGGTATGGCGGGTGTAGAAGTATACCATTATAGGGAGCTCCGTCCATACCA
ATGGTGGAGTGAAAAGCTGTCGTGATTCATCTCCACCTGCCAACCATGGGAACTTACTTATGAAT
CTAACTCTTTTGAATAAACCGTCGGCTCATGGAGCTACAGGGAATGATACTGACAGAGAAGGGTA
AACTCCTGCCATAGTTATTATGTCCCCAAACTCGACAGTTTTTTGATCATCCCCCCTAGCTCACA
TGGAGTATGTTACGCCTTCCAATGGATAAACGTTAGTACCCGTGGATAGAGATGTTTTCCCAATG
ATTGATAGATATACCGGGGAGATAGTTTGGCAAGCAAGATCTTCTACTGGAAATGAAGCTGTCTT
CTACGGGAGAAACTTCGTCGGATAGGCCGGAGTGAGGGAGCCCAG
Right flanking sequence: Indices 131864 -- 132363
TATATATATTATTTATTTATTTATATTATAAGATATTATAAGATATTATAAGATATTATAAGATA
GTTAGTTAAAGATAAAGATTACTTATTACAAATTTTTTAGTCCCTTCGTTCCCGTCTGAGAGACT
GACATCAGACTTGTAGTCATTCCGGGAACCTACAAGACCTTGTCGAAGTAGAAAGATTGTTCCCT
CTCTGAACATGAATGGCGCTCTATCTATTCCTTCAACCCTATGTTGACTGCTGTCAAGATTGATG
CAGGAATGAAATTAAGAAAAGACCTTTCTCCCGTGTGCCATGTGCCTTGAAGCTCCAGAGTCTAT
GATCCAGTCCATGCTATTTGCGTGATGGAAAATAGTAGGAACTGGACGTCGGAAGAATCCGCAAA
TGAATATTCTTTATTTCCTCTCGGACAGGCCCTCTTTTCTCATTCGAATGGACATCTCTTTCGGT
AATGATCATCTACAACTGAAAGACTGACGTCTTCCTCTACTCGAT
Found at i:131837 original size:32 final size:33
Alignment explanation
Indices: 131793--131863 Score: 119
Period size: 32 Copynumber: 2.2 Consensus size: 33
131783 GGGAGCCCAG
*
131793 TAATAT-ATAAAATAAATATATAAT-AAATATA
1 TAATATAATAAAATAAATATATAATAAAATAAA
131824 TAATATAATAAAATAAATATATAATAAAATAAA
1 TAATATAATAAAATAAATATATAATAAAATAAA
131857 TAATATA
1 TAATATA
131864 TATATATATT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
31 6 0.16
32 18 0.49
33 13 0.35
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (33 bp):
TAATATAATAAAATAAATATATAATAAAATAAA
Left flanking sequence: Indices 131293 -- 131792
TACGCTATCGATTGGTATAGCTCAGAATGGTTCTTGATCGATTCCACCGGAACTTCAAAACGATT
ACTGGCCGATGTTCCGGTATGGCGGGTGTAGAAGTATACCATTATAGGGAGCTCCGTCCATACCA
ATGGTGGAGTGAAAAGCTGTCGTGATTCATCTCCACCTGCCAACCATGGGAACTTACTTATGAAT
CTAACTCTTTTGAATAAACCGTCGGCTCATGGAGCTACAGGGAATGATACTGACAGAGAAGGGTA
AACTCCTGCCATAGTTATTATGTCCCCAAACTCGACAGTTTTTTGATCATCCCCCCTAGCTCACA
TGGAGTATGTTACGCCTTCCAATGGATAAACGTTAGTACCCGTGGATAGAGATGTTTTCCCAATG
ATTGATAGATATACCGGGGAGATAGTTTGGCAAGCAAGATCTTCTACTGGAAATGAAGCTGTCTT
CTACGGGAGAAACTTCGTCGGATAGGCCGGAGTGAGGGAGCCCAG
Right flanking sequence: Indices 131864 -- 132363
TATATATATTATTTATTTATTTATATTATAAGATATTATAAGATATTATAAGATATTATAAGATA
GTTAGTTAAAGATAAAGATTACTTATTACAAATTTTTTAGTCCCTTCGTTCCCGTCTGAGAGACT
GACATCAGACTTGTAGTCATTCCGGGAACCTACAAGACCTTGTCGAAGTAGAAAGATTGTTCCCT
CTCTGAACATGAATGGCGCTCTATCTATTCCTTCAACCCTATGTTGACTGCTGTCAAGATTGATG
CAGGAATGAAATTAAGAAAAGACCTTTCTCCCGTGTGCCATGTGCCTTGAAGCTCCAGAGTCTAT
GATCCAGTCCATGCTATTTGCGTGATGGAAAATAGTAGGAACTGGACGTCGGAAGAATCCGCAAA
TGAATATTCTTTATTTCCTCTCGGACAGGCCCTCTTTTCTCATTCGAATGGACATCTCTTTCGGT
AATGATCATCTACAACTGAAAGACTGACGTCTTCCTCTACTCGAT
Found at i:131840 original size:21 final size:21
Alignment explanation
Indices: 131794--131872 Score: 88
Period size: 21 Copynumber: 3.6 Consensus size: 21
131784 GGAGCCCAGT
*
131794 AATATATAAAATAAATATATAATA
1 AATATATAATAT-AATA-A-AATA
131818 AATATATAATATAATAAAATA
1 AATATATAATATAATAAAATA
*
131839 AATATATAATAAAAT-AAATA
1 AATATATAATATAATAAAATA
131859 ATATATATATATAT
1 A-ATATATA-ATAT
131873 TATTTATTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.12
21 25 0.50
22 4 0.08
23 4 0.08
24 11 0.22
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AATATATAATATAATAAAATA
Left flanking sequence: Indices 131294 -- 131793
ACGCTATCGATTGGTATAGCTCAGAATGGTTCTTGATCGATTCCACCGGAACTTCAAAACGATTA
CTGGCCGATGTTCCGGTATGGCGGGTGTAGAAGTATACCATTATAGGGAGCTCCGTCCATACCAA
TGGTGGAGTGAAAAGCTGTCGTGATTCATCTCCACCTGCCAACCATGGGAACTTACTTATGAATC
TAACTCTTTTGAATAAACCGTCGGCTCATGGAGCTACAGGGAATGATACTGACAGAGAAGGGTAA
ACTCCTGCCATAGTTATTATGTCCCCAAACTCGACAGTTTTTTGATCATCCCCCCTAGCTCACAT
GGAGTATGTTACGCCTTCCAATGGATAAACGTTAGTACCCGTGGATAGAGATGTTTTCCCAATGA
TTGATAGATATACCGGGGAGATAGTTTGGCAAGCAAGATCTTCTACTGGAAATGAAGCTGTCTTC
TACGGGAGAAACTTCGTCGGATAGGCCGGAGTGAGGGAGCCCAGT
Right flanking sequence: Indices 131873 -- 132372
TATTTATTTATTTATATTATAAGATATTATAAGATATTATAAGATATTATAAGATAGTTAGTTAA
AGATAAAGATTACTTATTACAAATTTTTTAGTCCCTTCGTTCCCGTCTGAGAGACTGACATCAGA
CTTGTAGTCATTCCGGGAACCTACAAGACCTTGTCGAAGTAGAAAGATTGTTCCCTCTCTGAACA
TGAATGGCGCTCTATCTATTCCTTCAACCCTATGTTGACTGCTGTCAAGATTGATGCAGGAATGA
AATTAAGAAAAGACCTTTCTCCCGTGTGCCATGTGCCTTGAAGCTCCAGAGTCTATGATCCAGTC
CATGCTATTTGCGTGATGGAAAATAGTAGGAACTGGACGTCGGAAGAATCCGCAAATGAATATTC
TTTATTTCCTCTCGGACAGGCCCTCTTTTCTCATTCGAATGGACATCTCTTTCGGTAATGATCAT
CTACAACTGAAAGACTGACGTCTTCCTCTACTCGATCCTTAGTTA
Found at i:131899 original size:10 final size:10
Alignment explanation
Indices: 131886--131928 Score: 86
Period size: 10 Copynumber: 4.3 Consensus size: 10
131876 TTATTTATTT
131886 ATATTATAAG
1 ATATTATAAG
131896 ATATTATAAG
1 ATATTATAAG
131906 ATATTATAAG
1 ATATTATAAG
131916 ATATTATAAG
1 ATATTATAAG
131926 ATA
1 ATA
131929 GTTAGTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (10 bp):
ATATTATAAG
Left flanking sequence: Indices 131386 -- 131885
TAGAAGTATACCATTATAGGGAGCTCCGTCCATACCAATGGTGGAGTGAAAAGCTGTCGTGATTC
ATCTCCACCTGCCAACCATGGGAACTTACTTATGAATCTAACTCTTTTGAATAAACCGTCGGCTC
ATGGAGCTACAGGGAATGATACTGACAGAGAAGGGTAAACTCCTGCCATAGTTATTATGTCCCCA
AACTCGACAGTTTTTTGATCATCCCCCCTAGCTCACATGGAGTATGTTACGCCTTCCAATGGATA
AACGTTAGTACCCGTGGATAGAGATGTTTTCCCAATGATTGATAGATATACCGGGGAGATAGTTT
GGCAAGCAAGATCTTCTACTGGAAATGAAGCTGTCTTCTACGGGAGAAACTTCGTCGGATAGGCC
GGAGTGAGGGAGCCCAGTAATATATAAAATAAATATATAATAAATATATAATATAATAAAATAAA
TATATAATAAAATAAATAATATATATATATATTATTTATTTATTT
Right flanking sequence: Indices 131929 -- 132428
GTTAGTTAAAGATAAAGATTACTTATTACAAATTTTTTAGTCCCTTCGTTCCCGTCTGAGAGACT
GACATCAGACTTGTAGTCATTCCGGGAACCTACAAGACCTTGTCGAAGTAGAAAGATTGTTCCCT
CTCTGAACATGAATGGCGCTCTATCTATTCCTTCAACCCTATGTTGACTGCTGTCAAGATTGATG
CAGGAATGAAATTAAGAAAAGACCTTTCTCCCGTGTGCCATGTGCCTTGAAGCTCCAGAGTCTAT
GATCCAGTCCATGCTATTTGCGTGATGGAAAATAGTAGGAACTGGACGTCGGAAGAATCCGCAAA
TGAATATTCTTTATTTCCTCTCGGACAGGCCCTCTTTTCTCATTCGAATGGACATCTCTTTCGGT
AATGATCATCTACAACTGAAAGACTGACGTCTTCCTCTACTCGATCCTTAGTTAGACTATCTCCC
TCCACCTCGATTCTTCTGATCCTCATAGCCGAACTCCTTTTTTAT
Found at i:164243 original size:29 final size:26
Alignment explanation
Indices: 164186--164260 Score: 114
Period size: 26 Copynumber: 2.8 Consensus size: 26
164176 TACAGGGATG
*
164186 CTACTACTAACTACTGACTAAAGAGA
1 CTACTACTAGCTACTGACTAAAGAGA
164212 CTACTACTAGCTACTGACTAAAGAGACTA
1 CTACTACTAGCTACTGACTAAAGAG---A
164241 CTACTACTAGCTACTGACTA
1 CTACTACTAGCTACTGACTA
164261 TGTAGCTGGG
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 24 0.53
29 21 0.47
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (26 bp):
CTACTACTAGCTACTGACTAAAGAGA
Left flanking sequence: Indices 163686 -- 164185
ATCCCTTAGCGTTGATCCACCAGCGGCTTCACTCTGAAGCAAAGGCAGGGGCACTACCAGAAGCA
TACCTTCCATATCGAGATCGTGATCCAGATCCGTATACGAGGCTATAAGCACCAGAGCAAGCACC
AATAGCAGTTGATCGGGAAGTATATCCAAAAGTAGATCAGGATGGATCTTCTCTCTTTCTTCTTT
TACTTAACTCCGAAATCTTTTCTTTCGATCCAGCAGTGGAGATAGAGACAGAGGCAGATGCATTT
GACCGAGTGGAGACAGCTGTGGAAGCTGCAATCCTGGAGGAGAGAATGAAGTAGGTAGGGCCCGC
GGGACTAGAAAACTCGTTTCCCTATCTATCTCTCTCATTTCTTCTGGTCGACGGCCTTCCTCTAC
TCTTGCTACCAGGCCCGGTAGTGACAGGGATGCTACTGCATGTGCTACTACTACTACCTACTGAC
TAAGGAACTTCAGGGATGCTACTGCTACTACTACCTACAGGGATG
Right flanking sequence: Indices 164261 -- 164760
TGTAGCTGGGACAGTGAAGATCAAAGATTAGGTATCCTATCCTGTGCAATCTAGATAAATGATTG
GTGTAGGAACCATTCTACTCTCAAAGAAGAAGATAAAATGCCTATCCCACCCACAAGACTCCGAC
GACTCGGCCTTCGCCCTCGAACAAGTCTTTCTCACTTTCGTCAAATTCTTGCTCTTGCTCTGCCC
TTGTTTTTTCAGAACAAAAAAAAAGAAAGACATTAAGAAATGGAAGAAGAACCTTCGAAAAGGAG
TGTCTTCCTTCGAAGCGAAGCTTGACCATCCACTGACTATTGATGAAGTGATGAAATGTGGAAAT
TTGATGAATAGCTCAGTAAGGTGACGTCGCTTCGCTTTTTTTTATATAAAGTAGTAAGCTGATCT
CCGGCTGATCCTACCGCAGCCGTCACGCCCCCGTTTTAGCATTTTTTGGGGGGAGTAGGGTAGCT
CCTGTTCCAATGGAGGGACGTGTCTGGTCAACCGTTCGTTGAAAT
Found at i:215727 original size:19 final size:20
Alignment explanation
Indices: 215703--215741 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
215693 AGAGAGAACT
215703 AAGGAATGCC-ATAAG-GAGA
1 AAGGAAT-CCGATAAGAGAGA
215722 AAGGAATCCGATAAGAGAGA
1 AAGGAATCCGATAAGAGAGA
215742 GAAATCACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 12 0.67
20 4 0.22
ACGTcount: A:0.49, C:0.10, G:0.31, T:0.10
Consensus pattern (20 bp):
AAGGAATCCGATAAGAGAGA
Left flanking sequence: Indices 215203 -- 215702
GACAGATTTTAGTCAACCACAGAGCTAACCGCTGCCCTAAGAAAGCTAGAGCGAATAGGCGCTTG
TGCGCTTGCAGAGTGAGGGTCGGGCTGATCCAAGAGTTCTGGTTCCGGTTCGAGAACCACTTCTT
CCTCTGCAAACAAAAAATGGGGCACACCAGCCCTGTCAGTGGAGTTGCACTCGTTGTTCCATCTT
CTTAATCAAAGCAAAGTCAGATTCCAACCTCGGACACATCCTCTTCTCATTGATCTGTGGAATCG
GCCCGCTGTGAGCCAACATTGGAACCAGGTCTTTTGAGTCTCCTACTCCTCTTGCTCTTAGCCCA
GTACTGGAGGTCGAGTGGAACTGGTTTTCCGGAAGCAAGAAAGACTCCTTTTGTTTAGTGCTCAA
AGGCAAGTCAATAAATCGATAGAAACTAAATAAAGGAAGAACAATCATTCATTGATGTAGTCGAT
CAAGCAGAACAGAATCTATCTCATTGAATAGGGAAAGAGAGAACT
Right flanking sequence: Indices 215742 -- 216241
GAAATCACAAAAGGAAGTGGACTCCAAGAATCCGAGAGTCTCAGTTTAGTTTCTATCGAGTGTAA
GTCATTCAGTCCCGACAGCCTCCCACCCTAGACCTATAGTTTCACGTGGGAACTAGGACCACTTT
CTAGTTGGTACTACAACGCACAAGCGGTAAGAGCAAACTGTCTTATTGGTTTCCTTTATTGCGAC
GTACTCTATGGGCTTATCGTCCCCCTCCCTACACGTCGACCTTTTCCTTGCTCTGGCACTGATTG
ACCAGCTTCATCGTCAACATTCTCATTCCCATAGCTTCTCGGATGACGACTGCTGACTTTGTCTT
CATTTCATTCTTTGACTGCTATGAGCTTGAGGCAGAGTCGGCTGAAGGTAGAAGGAGAAGAAGAG
ATTTGACTATGCCCTTCCGATCGAAAAAAAGAAGATAATTGCTCTGGAAAACTTGTGAAATTCAT
CTGATGGGCTTTTCTTTCCATTGAATAGGAATCGCCCGGTCAACG
Found at i:253650 original size:21 final size:21
Alignment explanation
Indices: 253626--253667 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
253616 CCACTACTGT
*
253626 ACGAATAGCATTTCCTTCTAC
1 ACGAATAGCATTTCCTGCTAC
253647 ACGAATAGCATTTCCTGCTAC
1 ACGAATAGCATTTCCTGCTAC
253668 GGTTTGAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (21 bp):
ACGAATAGCATTTCCTGCTAC
Left flanking sequence: Indices 253126 -- 253625
GAGTTTCCAAGGCTCTTTCCCATCGAAGTCCTTGTTGGGCAGGTGCTATTCGGGCAGATTCAACT
TCGAGCTAGGCTTTGCTGACTTGAAAGTCCAGGTGGAAGTAGTAAGAATTGCTGACAAGCGGAGC
TCTACTGAACCTACTTTATAAATGCAATCGCCGGATGATTTCCCATCTCCTGAAAAATATCCTAA
GTGAGGTGGACTTTATCCATACCGTACTGGCAGGTACGATGAGGTTTCTTAAGAATACCAATTCT
TTCGGACCGAAGCGCGCTCAATGGCTTTTTGGGGCTTTTCGCGATGCCGAGATAACTAACTACCC
CTCCTCCCAATGGGAATAGGGGTTACGTCATGTACGAAACTTTCTTTATAGTATACCACTTCTAA
CTTGACTACTTTATAGTATACCACTTCTGGCTCGTCATGCTGCATCTCTTCCGAGACCAGGACCT
TTTATCACGACTTTCGCCTCTTTCGTACCCTGCTTCCACTACTGT
Right flanking sequence: Indices 253668 -- 254167
GGTTTGAGCAGCAAACGGGGTGTCCCAAATCTCTTTTTCTCTTTTGCCTTTGAATTCAAAAGTAC
CTGCGTAGGACCAAGAAACCCCCGGCAAGAGTAGGCCAAAGAAGCAAAGGAATGAGCGCCTCGCC
TTTACTCTAATAAGGGCGTTAGCGCATCCGTTTTCTTTCGTATCGCTAGGCGCTCACGTTTTTTG
TCTGGGTGAGGATTGTTTTTTTGGCTTGCAACTTGATTAGAGAAGGGCCGATTTGACTGAAGCTT
TCGAGAGCCTCCCTACAGATCTTTTGCATGCAACTTTCCTTCCTCCAGCAGTTCCTTATGATTCG
GACAGCAGTTCCTTATGATTCGGAATAGAGACTCCTTCATCCCATACCCCTATAATAATGGTAGA
GTAAGGGCTCAGGGTACCTTCCATGAATGGGACGGAGAAATCGATCGATACCGCCTTACCTGATA
GGGGGAAAAGCGCCGGCCGAGCGGCGCAACGATCAGTGTCAATCA
Found at i:254001 original size:22 final size:22
Alignment explanation
Indices: 253973--254016 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
253963 TTCCTTCCTC
253973 CAGCAGTTCCTTATGATTCGGA
1 CAGCAGTTCCTTATGATTCGGA
253995 CAGCAGTTCCTTATGATTCGGA
1 CAGCAGTTCCTTATGATTCGGA
254017 ATAGAGACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (22 bp):
CAGCAGTTCCTTATGATTCGGA
Left flanking sequence: Indices 253473 -- 253972
TTACGTCATGTACGAAACTTTCTTTATAGTATACCACTTCTAACTTGACTACTTTATAGTATACC
ACTTCTGGCTCGTCATGCTGCATCTCTTCCGAGACCAGGACCTTTTATCACGACTTTCGCCTCTT
TCGTACCCTGCTTCCACTACTGTACGAATAGCATTTCCTTCTACACGAATAGCATTTCCTGCTAC
GGTTTGAGCAGCAAACGGGGTGTCCCAAATCTCTTTTTCTCTTTTGCCTTTGAATTCAAAAGTAC
CTGCGTAGGACCAAGAAACCCCCGGCAAGAGTAGGCCAAAGAAGCAAAGGAATGAGCGCCTCGCC
TTTACTCTAATAAGGGCGTTAGCGCATCCGTTTTCTTTCGTATCGCTAGGCGCTCACGTTTTTTG
TCTGGGTGAGGATTGTTTTTTTGGCTTGCAACTTGATTAGAGAAGGGCCGATTTGACTGAAGCTT
TCGAGAGCCTCCCTACAGATCTTTTGCATGCAACTTTCCTTCCTC
Right flanking sequence: Indices 254017 -- 254516
ATAGAGACTCCTTCATCCCATACCCCTATAATAATGGTAGAGTAAGGGCTCAGGGTACCTTCCAT
GAATGGGACGGAGAAATCGATCGATACCGCCTTACCTGATAGGGGGAAAAGCGCCGGCCGAGCGG
CGCAACGATCAGTGTCAATCAGCGGAAAAGGACCCTAATCGATTCGGGGTCGGTTGCTGTTGCCA
ATAAGAGAGATCCGTCGTTGCTGCCGGTCTTTCCACCAATGAGCACTTGCTTGAGACCCCTTCAC
GCTGCAACCAAAGACCGCGCTTCGCTTGGTAAGAACCGAGACCCTTCGGCAGTCAACCTATGGTT
ACCTTACGATAGCTCAGGTTGGTTAGTCAAGTAAATGGCGGCTACAGGAAGACATACTTAATGAA
GCGGTGAAGCGGTCCAGCACTAACTAAAGGATAGCCATGGCCGGCTAGCGAGCCACTAAGAGATT
GGTTCTGCTTGGGAAGGGTCTACCCCAAAAAGAGTGTGTTTCTTC
Found at i:284665 original size:16 final size:18
Alignment explanation
Indices: 284640--284691 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
284630 TCCCCGTTAC
*
284640 AAATAATATATTTATTAAT
1 AAAT-ATATATATATTAAT
*
284659 AAATATATATATTTTAAT
1 AAATATATATATATTAAT
*
284677 AAATAAATATATATT
1 AAATATATATATATT
284692 GTAAAGTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 25 0.86
19 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATATATATATATTAAT
Left flanking sequence: Indices 284140 -- 284639
AGCGGATCCCGCAGAGCCAGTAGCGTAGCTAGAAGTTTTTCCTTTCTTTGTCAGTTGTAGATTCC
GTTAAAGATCCAGCAGCAGCAATTGTTTAACTGAGTGATCCAGATGATCCAGTTACAGTGCCAGA
GCGAGTAGTGCCATTTCACTTTTCGTATTTTAACGCTTATCACCAAGCAAATGTCTTTCTGTAAA
CTGACAATTATGCCAACTATAACAGTTCCTTGATTTAGAATGCATTTCCCCCGTCGGGGGGCAGG
ATCATGTGCACGGAGGGACAGGCGGTCCCTCGCGCTAGTAGAAGGAGAGAGTTTCATTCAGGCTC
TCTATCGTCCAACTAGCCCTCCCTCCTGCTTAGTTGTCTACTAGGCGGAAAGCGTGCTCTATTGC
CCATCCTCATGGTAGGTTACTTTCTTTCCTCCAATCCTCTCTTGGTGGAATCCTTTGCCTATCAC
ACAGCTCTTTCGCTCTCACTGCGCGTGATCCGCGATCCCCGTTAC
Right flanking sequence: Indices 284692 -- 285191
GTAAAGTAAACTACCTAGCATGGAATATAGACATGAAGCAAGAAGCAATTAAGCATTAAAAAGAC
GCAAGTAAACTAGCAATATAAAAAAAAACTAAGCGATCAAGCATAAAGTGAGTAATTAAGCAAGT
TGGAAACCGGTGATTTGGGAGGTAAAAGGGGATTCCTGTTTTGGCTTGAATCCGCTTTCCCCAGT
GGAGTCGCCAAGCTGTAAAAGCATAGCGAGCTCGTTAGGGACCCTAAAATAGAAATGGAGTCGCC
ACCTAAAAAAAAACGGAAAATGAAAAGAATTATATAATGAAAGTGGCTATCTTCCTTCAAGTGAC
AGAGAGGATCGAGAAACCATCGCCCAAAGGTGCTTTCACGAAAGCCGGTCTCCGGTGGTAAAGAA
CTTTCTTCACTCTAGAAGCCTTCCAAACCATCCACTGGATTTTATTGTTCGTAAGGGAGGAATAT
TTTTGTGTTGTATATAAAAAAAGGACTTTCGATTTAGCGTTGTAA
Found at i:284681 original size:22 final size:20
Alignment explanation
Indices: 284640--284690 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
284630 TCCCCGTTAC
*
284640 AAATA-ATATATTTATTAAT
1 AAATATATATATTTATAAAT
284659 AAATATATATATTTTAATAAAT
1 AAATATATATA-TTT-ATAAAT
284681 AAATATATAT
1 AAATATATAT
284691 TGTAAAGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 5 0.18
20 5 0.18
21 3 0.11
22 15 0.54
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATATATATATTTATAAAT
Left flanking sequence: Indices 284140 -- 284639
AGCGGATCCCGCAGAGCCAGTAGCGTAGCTAGAAGTTTTTCCTTTCTTTGTCAGTTGTAGATTCC
GTTAAAGATCCAGCAGCAGCAATTGTTTAACTGAGTGATCCAGATGATCCAGTTACAGTGCCAGA
GCGAGTAGTGCCATTTCACTTTTCGTATTTTAACGCTTATCACCAAGCAAATGTCTTTCTGTAAA
CTGACAATTATGCCAACTATAACAGTTCCTTGATTTAGAATGCATTTCCCCCGTCGGGGGGCAGG
ATCATGTGCACGGAGGGACAGGCGGTCCCTCGCGCTAGTAGAAGGAGAGAGTTTCATTCAGGCTC
TCTATCGTCCAACTAGCCCTCCCTCCTGCTTAGTTGTCTACTAGGCGGAAAGCGTGCTCTATTGC
CCATCCTCATGGTAGGTTACTTTCTTTCCTCCAATCCTCTCTTGGTGGAATCCTTTGCCTATCAC
ACAGCTCTTTCGCTCTCACTGCGCGTGATCCGCGATCCCCGTTAC
Right flanking sequence: Indices 284691 -- 285190
TGTAAAGTAAACTACCTAGCATGGAATATAGACATGAAGCAAGAAGCAATTAAGCATTAAAAAGA
CGCAAGTAAACTAGCAATATAAAAAAAAACTAAGCGATCAAGCATAAAGTGAGTAATTAAGCAAG
TTGGAAACCGGTGATTTGGGAGGTAAAAGGGGATTCCTGTTTTGGCTTGAATCCGCTTTCCCCAG
TGGAGTCGCCAAGCTGTAAAAGCATAGCGAGCTCGTTAGGGACCCTAAAATAGAAATGGAGTCGC
CACCTAAAAAAAAACGGAAAATGAAAAGAATTATATAATGAAAGTGGCTATCTTCCTTCAAGTGA
CAGAGAGGATCGAGAAACCATCGCCCAAAGGTGCTTTCACGAAAGCCGGTCTCCGGTGGTAAAGA
ACTTTCTTCACTCTAGAAGCCTTCCAAACCATCCACTGGATTTTATTGTTCGTAAGGGAGGAATA
TTTTTGTGTTGTATATAAAAAAAGGACTTTCGATTTAGCGTTGTA
Found at i:284701 original size:22 final size:22
Alignment explanation
Indices: 284656--284701 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
284646 TATATTTATT
* *
284656 AATAAATATATATATTTTAATA
1 AATAAATATATATATGTAAATA
284678 AATAAATATATAT-TGTAAAGTA
1 AATAAATATATATATGTAAA-TA
284700 AA
1 AA
284702 CTACCTAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (22 bp):
AATAAATATATATATGTAAATA
Left flanking sequence: Indices 284156 -- 284655
CCAGTAGCGTAGCTAGAAGTTTTTCCTTTCTTTGTCAGTTGTAGATTCCGTTAAAGATCCAGCAG
CAGCAATTGTTTAACTGAGTGATCCAGATGATCCAGTTACAGTGCCAGAGCGAGTAGTGCCATTT
CACTTTTCGTATTTTAACGCTTATCACCAAGCAAATGTCTTTCTGTAAACTGACAATTATGCCAA
CTATAACAGTTCCTTGATTTAGAATGCATTTCCCCCGTCGGGGGGCAGGATCATGTGCACGGAGG
GACAGGCGGTCCCTCGCGCTAGTAGAAGGAGAGAGTTTCATTCAGGCTCTCTATCGTCCAACTAG
CCCTCCCTCCTGCTTAGTTGTCTACTAGGCGGAAAGCGTGCTCTATTGCCCATCCTCATGGTAGG
TTACTTTCTTTCCTCCAATCCTCTCTTGGTGGAATCCTTTGCCTATCACACAGCTCTTTCGCTCT
CACTGCGCGTGATCCGCGATCCCCGTTACAAATAATATATTTATT
Right flanking sequence: Indices 284702 -- 285201
CTACCTAGCATGGAATATAGACATGAAGCAAGAAGCAATTAAGCATTAAAAAGACGCAAGTAAAC
TAGCAATATAAAAAAAAACTAAGCGATCAAGCATAAAGTGAGTAATTAAGCAAGTTGGAAACCGG
TGATTTGGGAGGTAAAAGGGGATTCCTGTTTTGGCTTGAATCCGCTTTCCCCAGTGGAGTCGCCA
AGCTGTAAAAGCATAGCGAGCTCGTTAGGGACCCTAAAATAGAAATGGAGTCGCCACCTAAAAAA
AAACGGAAAATGAAAAGAATTATATAATGAAAGTGGCTATCTTCCTTCAAGTGACAGAGAGGATC
GAGAAACCATCGCCCAAAGGTGCTTTCACGAAAGCCGGTCTCCGGTGGTAAAGAACTTTCTTCAC
TCTAGAAGCCTTCCAAACCATCCACTGGATTTTATTGTTCGTAAGGGAGGAATATTTTTGTGTTG
TATATAAAAAAAGGACTTTCGATTTAGCGTTGTAATTTTGACTAA
Found at i:298754 original size:3 final size:3
Alignment explanation
Indices: 298731--298791 Score: 88
Period size: 3 Copynumber: 19.7 Consensus size: 3
298721 CATAACCTAA
298731 AAT ATAT AAT AA- AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
298777 AAT AAT AAAT AAT AA
1 AAT AAT -AAT AAT AA
298792 AAAATTACTT
Statistics
Matches: 54, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.04
3 43 0.80
4 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Left flanking sequence: Indices 298231 -- 298730
TCCTCTCCAACCTTTTCTATCTATCCTTAGAAGTAGGGCGAGTAATAAGCTCGATCTGGATCCGA
AATGGACTATGGATCTCGATCTATTGGTCTATGCGGGATTCGCCCTCTTCTCCAGTCTCAGTTCT
GGTTCGAACAGATCCCTTTCCGCCTTTGAATTAGCTACTACTACTACTGATGAATGCACCTTCGC
TGCACTCGGCCGCTTTCAGGGGGAGTGGGGATGGCAGGGAAGGGCATATCTTTGCCGTGATCCCC
ACGTTCAACTGTTAATCCGTACCTATCCACCCGATGTGATAGAGCGATACTCTGTTCGATTCCCC
TTTGATCCGATGCCTACTACCTAATAGAAAGGCAGCCAGCAGTCCATGGCTAGCTGATATATCAC
GGTTTCACCATCAGAGGGAGGAGATGGAAAGAAAGGAGTCGATCACCTAGCCGATCCCGAATAGC
CCGATCTTTATTTCATTTCAACCGATCCGCCGGGTCATAACCTAA
Right flanking sequence: Indices 298792 -- 299291
AAAATTACTTTGCTTTGATTCTGAATATCTGCTTCGACTACTGGAACATTTCTTAGAAACCATAT
TGACGGATACTAAAAACAAACCTTTTTTTCTCTATTCCTTACTTGTGGTATCTTCATTCATTCAG
TCATTCCTTCGTTTTATAGCCTGTTGTGCTTGTTTTCTTTTGCTTGTTCTGTTGGAACATTGAGT
AAATCAACCTTATTATGTAATAATTTTTCATTCAACAAGGTATGGGTATCTTCTCACTTAGCTTG
ACTAGACAGTTAGTTAGTTCAAAAGGAAAAAGAGTAAATTGACTTCTATTGAGACCTCTTCTTGG
ATGAAGAATCAAGTGACTTGTTAAAAGCATACTTCTAACTCGAACTATTTCATTACGGAGTACCT
CAAGCCCCGCCTCGCCGTTAGCTTCATATCCTTTTTTACGGAACTCTAGCTTGTGCCGTAGACGA
CCTTCCCACTAGTGTGAGAGGAAACTCTCGATTGGGACCCGTCCA
Found at i:315791 original size:12 final size:12
Alignment explanation
Indices: 315774--315816 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
315764 AAAGAAAGAC
315774 ATCAATTTGAAA
1 ATCAATTTGAAA
315786 ATCAATTTGAAA
1 ATCAATTTGAAA
315798 ATCAATTTGAAA
1 ATCAATTTGAAA
315810 ATCAATT
1 ATCAATT
315817 ATCAAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (12 bp):
ATCAATTTGAAA
Left flanking sequence: Indices 315274 -- 315773
GAGATTATCCTAAGGGCTGGCAGAGAATATTTATTTATGCTGTAAAAAAAAAAGTCTTCTGAAGC
CAAATGCTCTTGGATGGGCAGTTGAATAGGGAGAGAAAGAATTTTTTTCTCCCTCATATTTCATA
AAGTTGATCACTTTGAGGTCATGAAAACAGTGTGAATTTTGAAAAATTCTTGCATGCATCTCTGA
GGAGAGTGGCACGGCCAAACATCATCCCAGAAGCGAATCCGCTTACCATTGCCCAACCAAAGTCT
AGCCCAAGTTCTGCCTGATGAAAGTCTCTCTGTACCAAATAAGACCTTTCCAGATGCAGGATATT
TAAGGGGTTGGGTTGGTCAATCCATTTTAGCCATTGGAGAGGTACTTAGCAGCCAAAGATGAGGA
ATACGAATAGCTTTTTCTTTTCCTTTTGAAATCTCCATAGCCACTTCATAAGAAGGGCTGGCTTG
GTTGAAGTCCACCTCCTTCGTTAAGGTAATTGAAAAAAGAAAGAC
Right flanking sequence: Indices 315817 -- 316316
ATCAAAATTGGATTTTATAAATAGAAAAGGCGAGGCCCTGTTTCAGACAAAGAATGGGACAGGGG
AAGGGGGATAGGTGAGGCGGGCCCCCTTCAACCAGATTACTTTACTAGCTAGAATTCATTCTTCA
ACAGTACAGGAACTGGTTTAACAAAAGGAGTCTCGAACTACAGTGATCTGATACCTTCTTCCCTT
GGTCTGGGAGGTAGGTTATGTAGGCTTACAACTGTTCATCCTTATTTTCATGTAGGTTGTTCGAT
CGCAAATGGCCAAATAATCGATTAGTAGTACGCCTGATATTGCCAGAATACCTTCTCCCTCTTGG
AAACTGGCTAAAAAAAAGGGGGGAACTTTTCCCATCTTACTTCTCTTTGCAATTTTCCGCTTTCT
TGCCTTATTATGGGAGTACAGTGTAGACTGGATAGTATTAAGCATTGGTGAAAGCTTTAACCTTA
CATCAGTGCCTAGGGCCTACTGAAGCGCTGCAGATCCTAGCAGAG
Found at i:324722 original size:105 final size:105
Alignment explanation
Indices: 324593--324803 Score: 422
Period size: 105 Copynumber: 2.0 Consensus size: 105
324583 TACCAAGCCG
324593 TCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTATTATTAAGAAAACTACTCA
1 TCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTATTATTAAGAAAACTACTCA
324658 CTATCCAAATGAAAGACGATCTAGAATCTACCCAAGAAGA
66 CTATCCAAATGAAAGACGATCTAGAATCTACCCAAGAAGA
324698 TCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTATTATTAAGAAAACTACTCA
1 TCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTATTATTAAGAAAACTACTCA
324763 CTATCCAAATGAAAGACGATCTAGAATCTACCCAAGAAGA
66 CTATCCAAATGAAAGACGATCTAGAATCTACCCAAGAAGA
324803 T
1 T
324804 AGAGAGTCCC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (105 bp):
TCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTATTATTAAGAAAACTACTCA
CTATCCAAATGAAAGACGATCTAGAATCTACCCAAGAAGA
Left flanking sequence: Indices 324093 -- 324592
GTGTCTTTACCAACTCGGTCCGCCCGGTGAGCGCTCACGACTAAGCGAGACTCGGATGCTGTCTC
ATTCGCTGTCTCGCAATACATTTTTCTTTTTCCGATACGGCTCGCGACCTAAAAAAATCCCGGCC
CACTCGCCACGGTCCACTCGTTCACTCGCTGCTTCAAGTAAACCACTCGATGCTCTCTCGCAATC
GATTAGTCTCGCTTCGTCTCTTGCGACGAAGCTTTTTAGATACTCCTTTCGCCTTTATGCATGCG
GGATTTTCTTCTTTTATTCAATTGTTATGTAGTGCCGGATTTAGAGGCAAGGGTACAAAAGATTT
GACTCACTGTAGACATTAAGAAGAGGAGACAACCAGCTCTTGGACTATAAAAATGCGCGTGCTCG
ATCTAGTAATCTTGGACAATTTTTGATGAACTGTCACTAAACTCAAAAAGAAAGAAGAGAAAAAA
CTGGGAGTTGGCGCCTACATAACTGGTTGCTTGCTTACCAAGCCG
Right flanking sequence: Indices 324804 -- 325303
AGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATA
ATGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCT
CTCTGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATCATGGGG
GTTTACAGGAGATCCCAGAGGCTCGCTCGGAAAGGCTGCTATACCAAACAATATTACTTAACTAC
AAAGAAATAAAAGACTTTAGTAGTCACTAGACTCACTATAGTAGTCCGTCCGGCTGCTCTTGCTT
AAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATGTAGTT
AGGTAGGGACAATCAATCCATAGTTACGGGAATAACGGAATGAATGGGGATCCCTATCAATATCA
AAATGAAGATTCTTATATAAGAAATCCTTTCTTTCCATAGATGTA
Found at i:391625 original size:16 final size:16
Alignment explanation
Indices: 391604--391638 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
391594 AGACAGAGAA
391604 CCGCTATAGCCAGTAC
1 CCGCTATAGCCAGTAC
*
391620 CCGCTATAGCTAGTAC
1 CCGCTATAGCCAGTAC
391636 CCG
1 CCG
391639 ATACAGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (16 bp):
CCGCTATAGCCAGTAC
Left flanking sequence: Indices 391104 -- 391603
AGGAGTGAATTGAGCAATCAACCTTCCCTTAAGCCTAAAGCCTAGCTTACCGTAACGGAACTAAC
GAAAGTGGCTGTATCGGTTTACGTAAGCACCTGCGGTGAGCTAAGACACAAGACACAGCACCTTT
GCGTCAAGTCAACTGCGCCCGCTAACCAAAACAGGAATTGATCTACGCTTCCCTTAACGGAAAGT
GGATGTCTAACTTAAAGCGACTCGCCCAAGAGTCCCTGCTTTTTCTCTCGGCTGCTTTCCCTGAA
GCGGCTGTCTCTGCTGTTCAGGCTGTCTCGTCTCGTACAGTCTCGGCTTGGCTTCCGGTGCTTGC
CCCTTCCAATGTTGGGCTGTCTCTGCGGTGCCGGCTCCCGGTTTTGTTCTCTCTGTCTTCGGTTT
AGGTTCCTTTCCCTTCACCGGGACCGCTCGATAGACAAAGCAGATAAGATACCGCTAGCCCGCAG
ACAGCTCAGGGAAGAGAACCGAGACAACCGGCAGCAGACAGAGAA
Right flanking sequence: Indices 391639 -- 392138
ATACAGAGCTCTTTCCGCTCGCACCGTTCAGTTCAGTAAGGAAAGTAAGTAAGCTCGTCGGAAAG
CAAGTCAAGTAGTTTCGGTAATAGAGTGCAAGAACCTTTGAAAAAATCCTTCTTGTTCGGGTAGG
CGCTCGTGATAGATAAAACGACTTCTGCTGTTCTGGGCTTTGGAAGTCTTAGAGAAAGCCTCCTT
TCTGCAGGTGCCGTAGTTAACTTCCGGAAGCAAGGCGCGGTACACTTTGAATACACTCGTTCAGT
TGCGTTAGAAGAGGGGAAAGCAAAAGCGCTTAAAAAAGATTACAACTTAGCCGTTGTGAAAGCAA
CAAAAGGCAGAGAGAAGGAACTCAGAACGCGGCTTAGAGAAAGACAGAAGGAACACAACCTCTTT
TCGAGACAGGAAGTCAGTTCAGTAAGTTAGTTTAGTCAAAGAACATTTGCTTTTCACTTCCGAAT
TTGATATATTAGCGGTTGGTTCTCACTTTGAAGTCGGCTTAGAGA
Found at i:403255 original size:105 final size:105
Alignment explanation
Indices: 403073--403283 Score: 422
Period size: 105 Copynumber: 2.0 Consensus size: 105
403063 AACCTTTAGT
403073 TAATAGGAGCCCTACTTCTTTCAGTAGCAAACATATTAAGAGTTTCCGGGCGGAGCGCACCTTTG
1 TAATAGGAGCCCTACTTCTTTCAGTAGCAAACATATTAAGAGTTTCCGGGCGGAGCGCACCTTTG
403138 GTACTTCAGTAGGGCAAGCAGTTTGATAGTGACTTCTTTC
66 GTACTTCAGTAGGGCAAGCAGTTTGATAGTGACTTCTTTC
403178 TAATAGGAGCCCTACTTCTTTCAGTAGCAAACATATTAAGAGTTTCCGGGCGGAGCGCACCTTTG
1 TAATAGGAGCCCTACTTCTTTCAGTAGCAAACATATTAAGAGTTTCCGGGCGGAGCGCACCTTTG
403243 GTACTTCAGTAGGGCAAGCAGTTTGATAGTGACTTCTTTC
66 GTACTTCAGTAGGGCAAGCAGTTTGATAGTGACTTCTTTC
403283 T
1 T
403284 TAGGGTAGGG
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 106 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (105 bp):
TAATAGGAGCCCTACTTCTTTCAGTAGCAAACATATTAAGAGTTTCCGGGCGGAGCGCACCTTTG
GTACTTCAGTAGGGCAAGCAGTTTGATAGTGACTTCTTTC
Left flanking sequence: Indices 402573 -- 403072
GGAGAAACGATCCAATCCATTCGGGGCTTCGGGGAACCAAAAAACGAACCATTTTTACGAAATTC
ATAGAAAAAAAAGAGAGATATATGATATTCAAATATATCAAAAATTTTAAAAAAATCTCATTATA
TATAGGAATCGAATATACATCCCTTTAGATGTCTATGTATCTATTATTTAATCATCTCCCGATTT
TCTTTTTTTTTTATATAGAAATATCTGCTCTTTCTCTCTAAATTGAAGCAAAAAAAATTTAGAGA
GAGAGCAGATGGATCCTATCCCCTATATCGAACACTCATTCCTATCTATTGATAGAAAGATCTTC
GTCAAATACCGGACTTTGCCTTTGTTCTATTTTTCTATTATAGGAATTCCTCATATCCAAGGCAG
CTTCCCACAAACACCCCACCCATACGAGGGGGGCTGTTCGCCTTTTGAATCGATAGTAGTAGGGG
CTTCATAGCGACTTTCATTCTAAAGGAAACCGAATAACCTTTAGT
Right flanking sequence: Indices 403284 -- 403783
TAGGGTAGGGCGACGAAAGGCTACTTCAATGACGGAAACGTCATAGGGTCGCCTTTGGAAGCTAA
AGCGAAAGTTGTTGAAAGCCGGGAGAAAAAGCGAAAGCTTGCTCGAAACGGCCCTTGACCCTAAC
CCTCGGAAGCGAAGACGCAAAGCGTCACTTTTCAAAAGGAAGGAGTGAGGCTGACTGAATCCATC
CATAAACCCGGAAACGAAACGAAGTTCGTTCCCTTTCGTCAAGTGGGTAAGGTAGGCGAACCACT
TAAGCTTTGCCTTAGACTGACGGAACAAAGCTAAGAAGTAGGCTGAATGGAAAAAGGAAAGGGAC
AAGGGCGGTCGTCGCTTGGCGCGAAGGCTGCTGGTTCGGGGGTAGGGTACGGTACTAAAGGTCCT
CGGACTTCCAGGCGGTTTTTCTTTTGGGCAGCTGTTCACCGTTGGATCTCGCTAATACAGCCTCC
TATGGTTTTCGTTACCGAGATATCTTTTCTTTTTTCCCAGGGATT
Found at i:418218 original size:15 final size:15
Alignment explanation
Indices: 418195--418224 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
418185 TTTTTAGCAA
418195 GCTTCAAAGAGTAGG
1 GCTTCAAAGAGTAGG
*
418210 GCTTTAAAGAGTAGG
1 GCTTCAAAGAGTAGG
418225 CGGTTCGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.23
Consensus pattern (15 bp):
GCTTCAAAGAGTAGG
Left flanking sequence: Indices 417695 -- 418194
ATACTATAAGTAGGACAAACAAACGCCTTAAAAGAGAAATGAAAGGCATTTTAGCATTTTTCCAC
TTATCCAATTCTTGGCATTTGTATTTGAGAGAGAGAGAGCTATGCTTAGGTCAGTTCCTTCAGTA
AACTTATTTGGTAAGTCAGAAGTTCACTTTAGGTAAGTAAGTAGTCCCGTAGAAAATTCATAAAA
CATGCGCAGATCTGGCACTTGAGGAGGTCAATCTTTCATGTTGGAAGCTACTGCTAAGGTACTCC
CCCTCATCTATAAAGGATAGGCAATTGAGAGAGAATAGGGCGATAGCGATAGACACAGGAACTGA
AATAGACTAAAAGATGACTTCCGTAGAGGAGAGGGGAAACCCGCTTAGATAGGGCGATAGCCCGG
TTTTTATTGAATATCCTTTCCTGTGCTTGTCTTGTATTGAGGTATACCGAAGATATGAGTCAAAG
TAGGTAACAGAAGGGGTAGTGAGGGATTGCTTTTTTTTTTAGCAA
Right flanking sequence: Indices 418225 -- 418724
CGGTTCGTATGTTTCTATGACCCCCAAGACGGAGCGAGACGGATACGCAGAGCAAGAGCTCTTAA
AGTCTACCCGGGCGGGATTCTTCATTCTTCGATCAGGGGCGGGCGCGGGCTTCTTCCCTTATATA
CGATGACATAGATAGAGCCTCCTTCTTTGATCCATTCATTGATCGACTATGAGGGGGCTGTTCGC
CTTTTGAATCGACAGTAGAGTAGGTTTGATCTTGCTTTCTCAATCTTTCTCTGATCCTAGCCGTG
TAGTAGATCCGGCTTTATTCGGCTAAAAAGAGGTGTGTGTGGCCGTCGTATCTGCCCGCCCCCTT
CTTCATTCATCCATTTAGGTCAGAATGGATCCAGGGAACCTGGCTCGGGAACAGCCCAGACTAAT
CACAGTAAGAGAGTCTAATCTCTGAAATATAGCATTTTATCTCCCTAGTAGTAGTAGTAGAAGGC
TTAGTATCTGACTTGATCCAATAGAGTCAGAACACACAGTAAGTA
Found at i:467184 original size:21 final size:21
Alignment explanation
Indices: 467160--467199 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
467150 ATGTAGCTGG
467160 GCCAGTAAAAGACAAGTAGAA
1 GCCAGTAAAAGACAAGTAGAA
* *
467181 GCCAGTTAAAGACGAGTAG
1 GCCAGTAAAAGACAAGTAG
467200 GCAGGGTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.15, G:0.28, T:0.12
Consensus pattern (21 bp):
GCCAGTAAAAGACAAGTAGAA
Left flanking sequence: Indices 466660 -- 467159
TATCTCTAAAGCTGCGGATTACAGCTCCTGACTCAACAAGTTCAAAGTCTGAAGTATGAGTCTTG
TTTGTGACATTAAAGAATGAACATTCAATTCAAAGGAATGGGACAGACTGCTGCTTGCTATTACT
GACTGCGGCTGCCGACCGAAGAACTGAAGATCTTCAATCTATGTTTGAGTGCTCTAGCGAAAGAA
AAGAATTTAGAATGCTAAAATGACTTCTAAAAATAGGATAGGAAGATTCTTTTCCATTTATTTAT
GAAATTACGTATCAATATACATTCCCTTTCCGTCAACTAAAGTCTGTTCGTTTCGTCCGTCAAAA
TGAAATGGCAATAACTCATCTCGGGCAAGAACCAACTACTAAGCGGTCGTTCGGGCTCTATTCCC
TCGGTCATGGCGAGGGGAAAGGGAAGGCATACCTTTGAAAGATTTACAGCCTAGCAAGGACTACG
CTGGCGAGTGACGATTGGCCGAGGGGAGTTCCATCATGTAGCTGG
Right flanking sequence: Indices 467200 -- 467699
GCAGGGTACTAAGAAGCCAGTGGGGTACGTAAACGGGGACAGATCACATGGTTTTGTACTGGTCA
GCTTTGGGCTGGCGAGTGACGATTGGCTGAGGCCCTCGTGGTGGAGTACTCTCTGACAGAATTGA
CGCTTCGCTTGGGCGCTCTATTATTGCCTCCTATTCCTGAGGGGGTGATCGAGGTTAAGCCGCGT
GGCGGACTATTCGCTTTTTTTTGGAGGGTGGGCCTTTCGTACTATAGTAGGCTTCAGCGCACTTC
AATCTAGTGGATTGGTTCAATAATATGGGTTTGAAATGATCCATGTTACGGAACCAAGACACAGC
TGGGTATAGGGCCTCCAACGCCTATAAATAGCAGGCAAAGGGAGACGGGGCCGAGGCAAGAAAGA
TGGATATCGCTGGAAGACTTGAGAGAGTTGAGCAAGAAATAGGAGAGGTGGAAAACGAGAAGCTC
CAACGGGAGCAAATCCTACATGCCTTTTTAGAGCATATGCCTCCC
Found at i:467883 original size:31 final size:31
Alignment explanation
Indices: 467845--467906 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
467835 GATAATGAAA
467845 AAGTCGTTACTGTATCTTCCGTCTGTCTACT
1 AAGTCGTTACTGTATCTTCCGTCTGTCTACT
* *
467876 AAGTCGTTATTTTATCTTCCGTCTGTCTACT
1 AAGTCGTTACTGTATCTTCCGTCTGTCTACT
467907 GGTTTTTCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.45
Consensus pattern (31 bp):
AAGTCGTTACTGTATCTTCCGTCTGTCTACT
Left flanking sequence: Indices 467345 -- 467844
CTCTATTATTGCCTCCTATTCCTGAGGGGGTGATCGAGGTTAAGCCGCGTGGCGGACTATTCGCT
TTTTTTTGGAGGGTGGGCCTTTCGTACTATAGTAGGCTTCAGCGCACTTCAATCTAGTGGATTGG
TTCAATAATATGGGTTTGAAATGATCCATGTTACGGAACCAAGACACAGCTGGGTATAGGGCCTC
CAACGCCTATAAATAGCAGGCAAAGGGAGACGGGGCCGAGGCAAGAAAGATGGATATCGCTGGAA
GACTTGAGAGAGTTGAGCAAGAAATAGGAGAGGTGGAAAACGAGAAGCTCCAACGGGAGCAAATC
CTACATGCCTTTTTAGAGCATATGCCTCCCGTCGATCCAATTCTCATAGAAGAGCGTATCAGCCT
TCTCCAGAGACAAATAAGTTTTCTCGAAGAGAGGAAGAGGGCGCTGCTCAAAGAACAGCAAGCGC
TCATTGTACGGGCGGTCACCCTCGGTGACCGTGGGGATAATGAAA
Right flanking sequence: Indices 467907 -- 468406
GGTTTTTCCAAGTTGTAATTGGCTCAGAGAGCTCTAGCTCTCCTTATTAGTATTATTATGGTTAA
TGGTCCGTTATCTAAGTTGTAATTGGCTCAGAGAGCTCTAGCTCTCCTTGTATTGTATTATAAAT
ACATTTTTTTTAATGGTCCTTTAATAGTATCTTCCAACGCTCAACTCACGGCAAAGAGAAAACGA
CCCGGTTCCATTACTTTCCATTTTTTTCTGGATAAGCACGGCCGGGGAAATGGTTTTATACGCAA
TTTCTCAGTCCTAAAACGAATCTACGTATTAACAAGGTGTTTACTCATCCAACGTGGAGAAAGTG
CTTTCTATTTTCTTTAACAGGTCGAACCCTCTCTGAAGACCTTGTGACTGCTATTGAAGACCGAA
ACCCCTTGGTACTGAGTGAACGAATGAAGCGGGCTGGGGAGGTGAAAAACAACTTCTTCTTTCGA
CGGTCGAGCTTTGAAAAGTCTCTCATCAATCCACTACTTTTTTTT
Found at i:476424 original size:105 final size:105
Alignment explanation
Indices: 476242--476451 Score: 420
Period size: 105 Copynumber: 2.0 Consensus size: 105
476232 TACTGAGACA
476242 AAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATC
1 AAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATC
476307 GTACATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGT
66 GTACATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGT
476347 AAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATC
1 AAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATC
476412 GTACATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGT
66 GTACATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGT
476452 TCCCTCATCT
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.26, C:0.14, G:0.37, T:0.23
Consensus pattern (105 bp):
AAAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATC
GTACATGGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGT
Left flanking sequence: Indices 475742 -- 476241
GGTTGGGCCAGGAGCGTCTCTTAACGCCTTCTTTTTTCTTCCCATCGGAAGTTATTTCACAAAGA
CTTGCCATGGTAAGGGAGAAGGGGGAACAGGCACACTTGAAGAGCGCAGTACAACGGAGAGTTGT
ATGCTGCGTTCGGGAAGGATGAATCGCTCCCGAAAAAGAATCTATTGATTCTCTCCCAATTGGTT
GGATCGTAGGTGCGATGATTTACTTCACGGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGC
TGCGCCAGGGAAAAGAATAGAAGAAGCATCTGACTCTTTCATGCATACTCCACTTGGCTCGGGGG
GATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTC
TAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAACCGGTGGCTCACTTTTTCTAAGTAAT
GGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACA
Right flanking sequence: Indices 476452 -- 476951
TCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAATAGCTTGATGCACTAT
CTCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGT
CTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGCATCCAGGGGTCACGGACCG
ACCATAGACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGTTGGGCAGTAAGGGT
CGGAGAAGGGCAATCACTCGTTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGGGCGGAAAAA
GGGGGAGAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTAG
AATGGGATTCCAATTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTTGAGAGCACAGTAC
GATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCG
Found at i:481835 original size:12 final size:12
Alignment explanation
Indices: 481818--481842 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
481808 GAGAAATTGC
481818 AATATAAAAAAA
1 AATATAAAAAAA
481830 AATATAAAAAAA
1 AATATAAAAAAA
481842 A
1 A
481843 GAAAAAGGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AATATAAAAAAA
Left flanking sequence: Indices 481318 -- 481817
CAAATATCGTAGAACAGAATGTGATACGATGAGATAGAATGCAATAGAAACAAAGACAGGGAACG
GGTTACCTACTCCTAACGGTCAAAGCGAGCCCTTTAATTCAATTCTTCATTCTTTAATTAAGAAT
TAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCAACCGCTCTACC
ACTGAGCTACTGAGGAACAACGGGAGATTCGACCTCATAGAGTTCAACTCCCGTTCTCAACCCAT
GAACAATATGAGTCCGAAGCTTCCTTCGTAACTCCCGGAACTTCTTCGTAGTGGCTCCGTTCCAT
GCCTCATTTCATAGGGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCTATATCCCAATTCC
ATTCATTTAATATCCCTTTGGTGTCATTGACATAAGAGATGTCATTTATAGTCTATCTGTTTCTA
TATATGGAAAGTTAAGAAATCATCATATAATAATCGAGAAATTGC
Right flanking sequence: Indices 481843 -- 482342
GAAAAAGGGAGGTTTGTGATGATTTTAAAATCTTTTCTACTAGGTAATCTATTATCCTTATGCAT
GAAGATAATAAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAG
GGCCCTCTTCTCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGGAGGTATCA
GCAACAACTGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCA
TCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGTTCTACCGTATCTTTTGTTTCATTTCT
TCTGGAACAATCACAAAAACTTTTTTTATTATGGATCTACTACCAGAAATTCAATGCGTAATCTC
AGCATTCAATGTGTATTCCTGAATAATCTAATTTTTCAATTATTCAACCATTTCATTTTACCAAG
TTCAACGTTAGCCAGATTATTCAACATTTATATGTTTCGATGCAA
Done.