123.fas.2.7.7.80.10.50.500.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_071216
Parameters: 2 7 7 80 10 50 500
Length:  1174803

Tables:   1   2   3   4   

This is table  4  of  4  ( 444 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008284--1008324	19	2.1	20	90	4	66	24	24	26	24	2.00
1008476--1008502	13	2.1	13	100	0	54	7	33	29	29	1.85
1011504--1011537	17	2.0	17	100	0	68	5	35	29	29	1.81
1011492--1011539	17	2.5	20	77	22	57	10	31	29	29	1.90
1011738--1011773	18	2.0	18	100	0	72	22	22	22	33	1.97
1011997--1012033	12	3.1	12	100	0	74	24	48	0	27	1.51
1013254--1013337	18	4.7	18	68	16	66	25	14	35	25	1.93
1013394--1013466	20	3.5	20	72	17	67	26	24	20	28	1.99
1013427--1013467	19	2.2	19	90	0	64	31	21	21	24	1.98
1016400--1016498	37	2.7	37	98	0	189	27	20	35	17	1.94
1019374--1019410	18	2.1	18	94	0	65	13	27	18	40	1.88
1023841--1023915	20	4.1	17	77	22	73	26	30	30	12	1.92
1023874--1023923	20	2.5	20	86	0	55	24	30	32	14	1.94
1024033--1024060	14	2.0	14	100	0	56	35	7	28	28	1.84
1024239--1024263	12	2.1	12	100	0	50	40	8	32	20	1.81
1029997--1030059	27	2.3	26	81	10	74	25	20	25	28	1.99
1030113--1030165	28	1.9	28	88	3	81	20	24	43	11	1.85
1034449--1034495	20	2.3	20	82	7	60	27	34	17	21	1.95
1035901--1035949	23	2.1	23	100	0	98	16	30	4	48	1.64
1036000--1036060	13	4.7	12	75	18	52	27	8	54	9	1.62
1036000--1036100	45	2.4	43	86	8	136	28	7	52	10	1.64
1036014--1036100	45	1.9	46	90	2	140	27	8	54	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039347--1039397	26	2.0	26	88	7	79	50	7	13	27	1.69
1051225--1051254	13	2.2	14	94	5	53	6	6	33	53	1.53
1051783--1051832	21	2.3	23	79	10	59	32	16	24	28	1.96
1057564--1057601	19	2.0	19	94	0	67	15	26	34	23	1.95
1064505--1064535	16	1.9	16	93	0	53	41	22	6	29	1.78
1064683--1064734	22	2.4	22	86	0	68	13	38	0	48	1.43
1064683--1064734	11	4.7	11	75	0	50	13	38	0	48	1.43
1065032--1065066	18	1.9	18	88	0	52	22	17	5	54	1.64
1065289--1065324	19	1.9	18	88	5	54	13	25	13	47	1.80
1065322--1065357	18	2.0	18	94	0	63	13	27	25	33	1.94
1065430--1065458	12	2.4	12	100	0	58	6	31	27	34	1.83
1065500--1065538	15	2.5	15	91	4	60	12	35	15	35	1.86
1077354--1077389	12	3.0	12	91	0	54	50	0	13	36	1.43
1077485--1077509	3	8.3	3	100	0	50	32	0	0	68	0.90
1078542--1078571	15	2.0	15	100	0	60	20	6	33	40	1.78
1079290--1079324	15	2.4	14	86	13	52	34	28	37	0	1.58
1080264--1080302	16	2.5	15	84	8	51	17	28	33	20	1.96
1082377--1082433	13	4.5	13	76	8	64	24	38	14	22	1.91
1082730--1082765	18	2.0	18	88	0	54	13	30	13	41	1.84
1100167--1100219	21	2.5	21	96	0	97	41	24	28	5	1.77
1100577--1100621	18	2.5	18	81	0	54	57	4	17	20	1.56
1100588--1100623	18	2.0	18	94	0	63	58	2	22	16	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101912--1101999	24	3.7	24	81	6	115	43	18	26	12	1.85
1103819--1103846	11	2.5	11	100	0	56	32	21	14	32	1.93
1104026--1104060	16	2.2	16	89	0	52	22	17	5	54	1.64
1104219--1104263	23	2.0	23	95	0	81	37	28	6	26	1.82
1104631--1104658	14	2.0	14	100	0	56	21	14	35	28	1.92
1105246--1105281	18	2.0	18	100	0	72	27	27	16	27	1.97
1105512--1105565	27	2.0	26	85	3	72	22	24	20	33	1.97
1105808--1105867	17	3.5	17	68	20	52	38	35	6	20	1.79
1106089--1106129	13	3.2	13	89	3	66	21	48	14	14	1.80
1107146--1107217	32	2.2	32	92	0	117	25	23	23	27	2.00
1109165--1109205	20	2.0	20	100	0	82	4	29	19	46	1.71
1109605--1109643	20	2.0	20	100	0	78	51	5	28	15	1.64
1112892--1112920	15	1.9	15	100	0	58	10	27	13	48	1.75
1118123--1118163	21	2.0	21	90	0	64	21	29	14	34	1.93
1121244--1121270	13	2.1	13	100	0	54	48	14	22	14	1.81
1122673--1122706	17	2.0	17	100	0	68	29	29	11	29	1.92
1123242--1123323	41	2.0	41	88	4	121	34	19	28	18	1.95
1124033--1124058	13	2.0	13	100	0	52	30	15	30	23	1.95
1132026--1132058	15	2.2	15	94	0	57	27	48	0	24	1.51
1132301--1132368	16	4.1	16	74	10	64	39	26	16	17	1.90
1133265--1133317	25	2.1	25	89	0	79	32	30	15	22	1.94
1133825--1133868	13	3.4	13	100	0	88	13	15	40	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134514--1134574	31	1.9	29	84	15	77	24	27	24	22	2.00
1135509--1135543	17	2.1	17	94	0	61	31	11	37	20	1.88
1137448--1137505	30	1.9	30	86	6	82	20	22	18	37	1.94
1139452--1139488	16	2.5	15	84	16	51	32	16	29	21	1.95
1140563--1140587	12	2.1	12	100	0	50	8	36	16	40	1.77
1144664--1144694	14	2.2	14	100	0	62	32	41	6	19	1.77
1151997--1152023	14	1.9	14	100	0	54	22	29	14	33	1.94
1154278--1154359	24	3.4	24	70	9	69	32	10	35	20	1.88
1156896--1156929	16	2.1	16	94	0	59	26	32	8	32	1.87
1158185--1158230	24	2.0	24	86	4	67	39	15	28	17	1.90
1158997--1159074	30	2.5	31	85	6	104	20	32	17	29	1.96
1168628--1168678	15	3.4	15	78	8	50	39	31	19	9	1.84
1168999--1169031	13	2.6	13	90	4	50	21	33	27	18	1.96
1169101--1169131	13	2.4	13	94	0	53	9	32	41	16	1.80
1170237--1170298	22	2.8	22	95	0	106	9	20	37	32	1.86
1170579--1170615	19	1.9	19	88	0	56	35	24	32	8	1.85
1171313--1171361	19	2.6	19	83	0	53	32	20	16	30	1.94
1174378--1174403	13	2.0	13	100	0	52	23	30	15	30	1.95

Tables:   1   2   3   4

The End!