123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_071216
Parameters: 2 7 7 80 10 50 500
Length:  1174803

Tables:   1   2   3   4   

This is table  2  of  4  ( 444 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350544--350580	17	2.2	17	95	0	65	16	16	29	37	1.90
355407--355458	19	2.7	19	77	11	61	25	25	25	25	2.00
358443--358516	35	2.0	38	87	7	109	24	27	24	24	2.00
364188--364224	18	2.1	18	90	10	58	10	29	18	40	1.85
368413--368460	23	2.1	23	84	0	60	47	10	25	16	1.78
372105--372134	14	2.1	14	93	0	51	13	26	33	26	1.93
372799--372835	18	2.1	18	100	0	74	45	21	27	5	1.73
388783--388836	22	2.5	22	85	8	67	22	25	31	20	1.98
390861--390901	21	2.0	21	90	0	64	17	24	31	26	1.97
393290--393346	19	3.0	19	70	14	55	1	43	12	42	1.52
400586--400640	28	2.0	28	85	7	76	36	16	16	30	1.91
405262--405291	10	3.0	10	95	0	51	20	0	46	33	1.51
412619--412650	16	2.1	15	94	5	55	37	0	34	28	1.57
414202--414252	23	2.2	23	92	0	84	11	15	52	19	1.73
417312--417352	20	2.0	20	85	4	55	19	36	12	31	1.89
424418--424451	11	3.1	11	91	0	59	2	26	35	35	1.72
424574--424620	22	2.1	22	88	0	67	19	29	27	23	1.98
425383--425439	23	2.6	23	86	5	73	12	22	28	36	1.90
430391--430468	33	2.4	33	88	0	111	15	25	17	41	1.89
431166--431191	13	2.0	13	100	0	52	23	15	15	46	1.83
436498--436566	30	2.3	30	87	5	95	40	11	34	13	1.80
443954--443986	13	2.5	13	90	0	57	15	36	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446086--446119	17	2.0	17	88	0	50	14	29	29	26	1.95
452243--452300	21	2.7	21	89	2	80	25	27	13	32	1.94
452251--452320	26	2.9	25	66	25	60	27	25	12	34	1.92
452420--452473	20	2.7	20	100	0	108	24	22	29	24	1.99
457827--457870	21	2.1	21	95	0	79	22	34	9	34	1.86
457955--457987	17	1.9	17	93	0	57	24	48	12	15	1.78
458606--458641	18	2.0	18	94	0	63	41	16	30	11	1.83
458742--458790	25	2.0	25	87	0	71	30	30	26	12	1.92
458938--458994	13	4.5	13	76	8	64	22	14	38	24	1.91
463153--463177	12	2.1	12	100	0	50	32	8	36	24	1.84
470664--470700	14	2.6	14	95	0	65	29	32	27	10	1.90
470859--470911	23	2.3	23	78	15	56	28	18	28	24	1.98
471402--471473	26	2.8	26	95	0	126	11	31	34	22	1.89
471375--471479	26	4.3	26	82	12	111	9	34	33	22	1.87
471598--471659	32	1.9	32	86	0	88	22	20	20	35	1.96
471823--471905	22	3.9	22	95	3	143	30	15	30	24	1.96
472494--472665	34	5.2	33	66	22	94	16	40	13	29	1.87
472677--472747	36	2.0	36	88	0	106	18	42	9	29	1.82
475434--475463	15	1.9	16	93	6	53	13	26	13	46	1.80
475945--475979	16	2.2	16	100	0	70	31	20	25	22	1.98
475980--476071	41	2.2	41	100	0	184	17	31	31	19	1.95
476074--476136	10	6.2	10	75	10	65	17	12	26	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476084--476150	31	2.2	31	94	0	116	16	17	22	43	1.88
478473--478536	15	4.5	15	73	15	55	29	23	23	23	1.99
479876--479918	21	2.0	21	95	0	77	58	16	9	16	1.63
485641--485675	17	2.1	17	100	0	70	42	22	5	28	1.76
493005--493042	14	2.7	14	91	0	58	13	42	7	36	1.73
493689--493724	15	2.4	15	100	0	72	22	11	13	52	1.72
493767--493813	17	2.7	18	80	6	60	42	6	19	31	1.76
497459--497511	8	6.6	8	84	0	52	45	3	16	33	1.66
497469--497511	4	10.8	4	84	0	50	46	2	18	32	1.62
497455--497510	28	2.0	28	89	0	85	44	5	14	35	1.68
500222--500273	27	1.9	27	92	0	86	30	42	9	17	1.81
501504--501532	15	1.9	15	100	0	58	34	17	13	34	1.89
511933--511992	27	2.3	27	80	13	72	21	20	31	26	1.98
512430--512454	12	2.1	12	100	0	50	32	44	24	0	1.54
513130--513187	17	3.4	17	95	0	98	10	29	12	48	1.73
514082--514123	13	3.2	13	82	0	57	45	28	7	19	1.76
518574--518655	30	2.7	30	98	0	155	31	19	24	24	1.98
518908--518976	13	5.5	13	81	13	90	24	17	27	30	1.97
518908--518998	23	3.8	24	86	7	87	26	17	25	30	1.97
518936--519010	23	3.3	23	94	0	114	30	17	21	30	1.96
522185--522226	16	2.6	16	92	0	66	16	28	30	23	1.96
529137--529194	30	1.9	30	89	3	89	13	17	29	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535169--535226	29	2.0	29	96	0	107	10	32	20	36	1.87
538821--538861	13	3.2	13	83	13	57	34	14	21	29	1.93
540658--540693	14	2.6	14	86	0	54	36	8	50	5	1.56
541204--541250	22	2.1	23	96	4	87	25	12	10	51	1.72
547549--547580	15	2.1	16	94	5	57	25	12	25	37	1.91
548962--548997	14	2.6	14	95	0	63	38	16	25	19	1.92
566767--566825	30	2.0	29	96	3	109	16	30	16	35	1.92
568550--568646	47	2.0	48	82	9	119	35	9	22	32	1.86
572326--572393	23	3.0	23	91	0	100	22	27	22	27	1.99
572348--572406	23	2.8	21	87	10	77	22	23	25	28	1.99
576099--576131	15	2.2	15	94	0	57	27	48	0	24	1.51
576374--576441	16	4.1	16	74	10	64	39	26	16	17	1.90
577338--577390	25	2.1	25	89	0	79	32	30	15	22	1.94
577898--577941	13	3.4	13	100	0	88	13	15	40	29	1.86
578587--578647	31	1.9	29	84	15	77	24	27	24	22	2.00
579582--579616	17	2.1	17	94	0	61	31	11	37	20	1.88
581521--581578	30	1.9	30	86	6	82	20	22	18	37	1.94
583525--583561	16	2.5	15	84	16	51	32	16	29	21	1.95
584636--584660	12	2.1	12	100	0	50	8	36	16	40	1.77
588737--588767	14	2.2	14	100	0	62	32	41	6	19	1.77
596064--596090	14	1.9	14	100	0	54	22	29	14	33	1.94
598345--598426	24	3.4	24	70	9	69	32	10	35	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600963--600996	16	2.1	16	94	0	59	26	32	8	32	1.87
602252--602297	24	2.0	24	86	4	67	39	15	28	17	1.90
603064--603141	30	2.5	31	85	6	104	20	32	17	29	1.96
612695--612745	15	3.4	15	78	8	50	39	31	19	9	1.84
613066--613098	13	2.6	13	90	4	50	21	33	27	18	1.96
613168--613198	13	2.4	13	94	0	53	9	32	41	16	1.80
614304--614365	22	2.8	22	95	0	106	9	20	37	32	1.86
614646--614682	19	1.9	19	88	0	56	35	24	32	8	1.85
615380--615428	19	2.6	19	83	0	53	32	20	16	30	1.94
618445--618470	13	2.0	13	100	0	52	23	30	15	30	1.95
625623--625655	17	1.9	17	100	0	66	6	42	21	30	1.77
627064--627093	9	3.3	9	95	0	51	23	50	20	6	1.71
627547--627581	17	2.1	17	94	0	61	37	17	8	37	1.80
629920--629961	15	2.8	15	100	0	84	23	14	14	47	1.80
631176--631202	13	2.1	13	100	0	54	40	14	7	37	1.74
635962--636002	16	2.6	16	84	0	55	36	31	2	29	1.71
641401--641441	18	2.2	20	91	8	68	34	12	41	12	1.80
642297--642334	17	2.3	16	95	4	67	42	21	13	23	1.88
650286--650316	15	2.1	15	93	0	53	12	29	9	48	1.73
659944--659983	20	2.0	20	100	0	80	25	20	25	30	1.99
661002--661049	15	3.2	15	81	0	69	33	20	33	12	1.90
662272--662296	13	1.9	13	100	0	50	32	0	12	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662354--662400	10	4.7	10	83	0	58	40	4	27	27	1.75
662411--662442	15	2.1	15	100	0	64	25	25	37	12	1.91
662511--662561	23	2.2	23	100	0	102	11	27	35	25	1.91
662861--662906	14	3.3	14	90	0	65	39	15	32	13	1.85
663424--663472	19	2.7	18	90	6	64	22	26	12	38	1.89
663435--663472	19	2.0	19	100	0	76	26	26	10	36	1.89
675618--675659	19	2.2	19	91	0	66	26	28	26	19	1.98
675760--675800	13	3.2	13	96	0	73	36	7	48	7	1.59
679558--679601	19	2.3	19	100	0	88	27	20	27	25	1.99
679636--679686	13	3.9	13	84	0	66	27	19	31	21	1.97

Tables:   1   2   3   4