Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069222
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 312146
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Warning! 71 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:306497 original size:14 final size:14
Alignment explanation
Indices: 306480--306523 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
306470 TTATATTACA
*
306480 TATTTAATATATTT
1 TATTAAATATATTT
*
306494 TATTAAATATATTA
1 TATTAAATATATTT
*
306508 AATTAAATATATTT
1 TATTAAATATATTT
306522 TA
1 TA
306524 GTTTACATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTAAATATATTT
Left flanking sequence: Indices 305980 -- 306479
TTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTT
ATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTA
TTATATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTA
GTATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTAT
ATATAAATATTATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAA
TAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAA
ATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTAT
ATTTTTATGTACATATCTAATTTTTATTTACATATTTATATTACA
Right flanking sequence: Indices 306524 -- 307023
GTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATAACAATTATAT
ATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACATTA
TTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAAATTTT
TTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGAA
AATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCG
GATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATGA
AAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAACTA
TATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAATTAA
Found at i:306571 original size:17 final size:20
Alignment explanation
Indices: 306530--306577 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
306520 TTTAGTTTAC
*
306530 ATAACTTATATTATAATTCT
1 ATAATTTATATTATAATTCT
306550 ATAATTTATATTAT-A-T-T
1 ATAATTTATATTATAATTCT
306567 ATAATTTATAT
1 ATAATTTATAT
306578 AACAATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 12 0.44
18 1 0.04
19 1 0.04
20 13 0.48
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (20 bp):
ATAATTTATATTATAATTCT
Left flanking sequence: Indices 306030 -- 306529
TTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAA
TTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATT
AGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATA
TATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATATATTTATTATA
AATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATT
CTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTTT
TATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTACATATTTATATTACATATTT
AATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTAC
Right flanking sequence: Indices 306578 -- 307077
AACAATTATATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAAT
TTATAACATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAA
ATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACC
CATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAAT
TATCCAGATCGGATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAAAAAT
ATACACAATGAAAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCTAAAC
TATATAAACTATATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAATTAAATAATAACT
TAAATAATAACATAATAATAATAACATAATAACAAAAAAAAAATA
Found at i:306587 original size:9 final size:9
Alignment explanation
Indices: 306575--306629 Score: 58
Period size: 9 Copynumber: 6.0 Consensus size: 9
306565 TTATAATTTA
306575 TATAACAAT
1 TATAACAAT
*
306584 TATATATAA-
1 TATA-ACAAT
306593 TATAACAAT
1 TATAACAAT
*
306602 TATATATAAT
1 TATA-ACAAT
306612 TATAACAAT
1 TATAACAAT
*
306621 TAGAACAAT
1 TATAACAAT
306630 ACTTTTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 3 0.08
9 24 0.63
10 11 0.29
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (9 bp):
TATAACAAT
Left flanking sequence: Indices 306075 -- 306574
ATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACT
ATCTATATAGTATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAAT
ATTATATTATATATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATAT
TTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATA
AATATAAATATAAATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTT
TAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTA
CATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTAC
ATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTA
Right flanking sequence: Indices 306630 -- 307129
ACTTTTTTATAATTTATAACATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATA
TAATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCA
CATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACA
GACAAGATACAATTATCCAGATCGGATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGA
ATGCGTTAAAAATATACACAATGAAAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAA
ATTCACTCTAAACTATATAAACTATATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAA
TTAAATAATAACTTAAATAATAACATAATAATAATAACATAATAACAAAAAAAAAATAAAAAGAA
AGTAAGGATTTGTATTGAATGAATTCAATTAGTATTACAGAGATA
Found at i:306587 original size:18 final size:18
Alignment explanation
Indices: 306549--306605 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
306539 ATTATAATTC
* *
306549 TATAATTTATATTA-TAT
1 TATAATTTATATAACAAT
306566 TATAATTTATATAACAAT
1 TATAATTTATATAACAAT
*
306584 TAT-ATATAATATAACAAT
1 TATAAT-TTATATAACAAT
306602 TATA
1 TATA
306606 TATAATTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 15 0.44
18 19 0.56
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (18 bp):
TATAATTTATATAACAAT
Left flanking sequence: Indices 306049 -- 306548
ATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTAT
ATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTAGTAT
ATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATATAT
AAATATTATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAAA
ATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATAT
AAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTT
TTATGTACATATCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATAT
ATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATTC
Right flanking sequence: Indices 306606 -- 307105
TATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACATTATTTTATAAATATAATAT
TTTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAA
AAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAAC
AGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGCT
ACATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATGAAAAAAACAAAAGAATTA
ATTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAACTATATTAAATAATAAAAAA
AAAATAATTAAAATTAAATTAAAATTAAATAATAACTTAAATAATAACATAATAATAATAACATA
ATAACAAAAAAAAAATAAAAAGAAAGTAAGGATTTGTATTGAATG
Found at i:306606 original size:18 final size:18
Alignment explanation
Indices: 306574--306622 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
306564 ATTATAATTT
306574 ATATAACAATTATATATA
1 ATATAACAATTATATATA
306592 ATATAACAATTATATATA
1 ATATAACAATTATATATA
306610 ATTATAACAATTA
1 A-TATAACAATTA
306623 GAACAATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 19 0.63
19 11 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATAACAATTATATATA
Left flanking sequence: Indices 306074 -- 306573
TATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATAC
TATCTATATAGTATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAA
TATTATATTATATATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATA
TTTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTAT
AAATATAAATATAAATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTT
TTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTT
ACATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTA
CATAACTTATATTATAATTCTATAATTTATATTATATTATAATTT
Right flanking sequence: Indices 306623 -- 307122
GAACAATACTTTTTTATAATTTATAACATTATTTTATAAATATAATATTTTATAAATTATAAATT
TTAAATATAATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTAT
CACAGCACATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATTAAATAG
ATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGCTACATTGTTGTCAATATG
AATGCGAATGCGTTAAAAATATACACAATGAAAAAAACAAAAGAATTAATTCAATTCAATTTAAC
CACAAAAATTCACTCTAAACTATATAAACTATATTAAATAATAAAAAAAAAATAATTAAAATTAA
ATTAAAATTAAATAATAACTTAAATAATAACATAATAATAATAACATAATAACAAAAAAAAAATA
AAAAGAAAGTAAGGATTTGTATTGAATGAATTCAATTAGTATTAC
Found at i:306673 original size:16 final size:15
Alignment explanation
Indices: 306652--306719 Score: 70
Period size: 16 Copynumber: 4.5 Consensus size: 15
306642 TTTATAACAT
306652 TATTTTATAAATATAA
1 TATTTT-TAAATATAA
306668 TATTTTATAAATTATAA
1 TATTTT-TAAA-TATAA
306685 -A-TTTTAAATATAA
1 TATTTTTAAATATAA
*
306698 TAAATTTTAAATATAA
1 T-ATTTTTAAATATAA
306714 -ATTTTT
1 TATTTTT
306720 TCTTTTTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
13 5 0.11
14 9 0.19
15 4 0.09
16 24 0.51
17 5 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTTTTAAATATAA
Left flanking sequence: Indices 306152 -- 306651
TATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATAT
ATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATATAT
TTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATA
AATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATA
AATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTACATATTTATATT
ACATATTTAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACATAACTTATATT
ATAATTCTATAATTTATATTATATTATAATTTATATAACAATTATATATAATATAACAATTATAT
ATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACAT
Right flanking sequence: Indices 306720 -- 307219
TCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGAAA
ATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCGG
ATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATGAA
AAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAACTAT
ATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAATTAAATAATAACTTAAATAATAACA
TAATAATAATAACATAATAACAAAAAAAAAATAAAAAGAAAGTAAGGATTTGTATTGAATGAATT
CAATTAGTATTACAGAGATAATATTCACATAAATACACGAAAACTATGGGTAGAAGAAAGGAAGC
TAGGAAAAAATTCGCGGGTTTAGTCAATCAATATAAATCAATATT
Found at i:306684 original size:23 final size:22
Alignment explanation
Indices: 306656--306718 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
306646 TAACATTATT
306656 TTATAAATATAATATTTTATAAA
1 TTATAAATATAA-ATTTTATAAA
* * *
306679 TTATAAATTTTAAATATAATAAA
1 TTATAAA-TATAAATTTTATAAA
*
306702 TTTTAAATATAAATTTT
1 TTATAAATATAAATTTT
306719 TTCTTTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 7 0.22
23 21 0.66
24 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTATAAATATAAATTTTATAAA
Left flanking sequence: Indices 306156 -- 306655
GATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTA
AATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATATATTTAT
TATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATA
AATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATA
TTTTTATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTACATATTTATATTACAT
ATTTAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAA
TTCTATAATTTATATTATATTATAATTTATATAACAATTATATATAATATAACAATTATATATAA
TTATAACAATTAGAACAATACTTTTTTATAATTTATAACATTATT
Right flanking sequence: Indices 306719 -- 307218
TTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGAA
AATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCG
GATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATGA
AAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAACTA
TATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAATTAAATAATAACTTAAATAATAAC
ATAATAATAATAACATAATAACAAAAAAAAAATAAAAAGAAAGTAAGGATTTGTATTGAATGAAT
TCAATTAGTATTACAGAGATAATATTCACATAAATACACGAAAACTATGGGTAGAAGAAAGGAAG
CTAGGAAAAAATTCGCGGGTTTAGTCAATCAATATAAATCAATAT
Found at i:306695 original size:30 final size:29
Alignment explanation
Indices: 306659--306718 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
306649 CATTATTTTA
*
306659 TAAATATAAT-ATTTTATAAATTATAAATTT
1 TAAATATAATAAATTT-TAAA-TATAAATTT
306689 TAAATATAATAAATTTTAAATATAAATTT
1 TAAATATAATAAATTTTAAATATAAATTT
306718 T
1 T
306719 TTCTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 10 0.36
30 14 0.50
31 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TAAATATAATAAATTTTAAATATAAATTT
Left flanking sequence: Indices 306159 -- 306658
TAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAAT
ATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATATATTTATTAT
AAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAAT
TCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTT
TTATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTACATATTTATATTACATATT
TAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATTC
TATAATTTATATTATATTATAATTTATATAACAATTATATATAATATAACAATTATATATAATTA
TAACAATTAGAACAATACTTTTTTATAATTTATAACATTATTTTA
Right flanking sequence: Indices 306719 -- 307218
TTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGAA
AATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCG
GATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATGA
AAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAACTA
TATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAATTAAATAATAACTTAAATAATAAC
ATAATAATAATAACATAATAACAAAAAAAAAATAAAAAGAAAGTAAGGATTTGTATTGAATGAAT
TCAATTAGTATTACAGAGATAATATTCACATAAATACACGAAAACTATGGGTAGAAGAAAGGAAG
CTAGGAAAAAATTCGCGGGTTTAGTCAATCAATATAAATCAATAT
Found at i:307015 original size:11 final size:11
Alignment explanation
Indices: 307001--307025 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
306991 AAAAAAAAAT
307001 AATTAAAATTA
1 AATTAAAATTA
307012 AATTAAAATTA
1 AATTAAAATTA
307023 AAT
1 AAT
307026 AATAACTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATTAAAATTA
Left flanking sequence: Indices 306501 -- 307000
TATATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATAT
TATAATTTATATAACAATTATATATAATATAACAATTATATATAATTATAACAATTAGAACAATA
CTTTTTTATAATTTATAACATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATAT
AATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCAC
ATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAG
ACAAGATACAATTATCCAGATCGGATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAA
TGCGTTAAAAATATACACAATGAAAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAA
TTCACTCTAAACTATATAAACTATATTAAATAATAAAAAAAAAAT
Right flanking sequence: Indices 307026 -- 307525
AATAACTTAAATAATAACATAATAATAATAACATAATAACAAAAAAAAAATAAAAAGAAAGTAAG
GATTTGTATTGAATGAATTCAATTAGTATTACAGAGATAATATTCACATAAATACACGAAAACTA
TGGGTAGAAGAAAGGAAGCTAGGAAAAAATTCGCGGGTTTAGTCAATCAATATAAATCAATATTA
ATTAAATAGACTCAAATAGACTCAAAAAGTCTAATTTCCCTTATTCGTTAAGAGAATTTCCAATG
AAAAAAAAACTCATTGAAATTAAAAGGACTGGCAAATTTTTTTATTTCGAGATCGAATTATTTCA
TTTATTCACTTGATTTTTTTCTATCCATCTTATATTAATTTCTATAAAATGAATTTCTATCACTA
ATAGAAAAAAAAAGATTTTTGTCGTTATAAGTTATAAAACAAAGTTATAAAACAAAGCATTCTAT
GATAAAAAAGAGATTCAATTAATTTGCGTATTATTTCAACATGAT
Found at i:307054 original size:14 final size:14
Alignment explanation
Indices: 307023--307064 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
307013 ATTAAAATTA
*
307023 AATAATAAC-TTA-
1 AATAATAACATAAT
307035 AATAATAACATAAT
1 AATAATAACATAAT
307049 AATAATAACATAAT
1 AATAATAACATAAT
307063 AA
1 AA
307065 CAAAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 16 0.59
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (14 bp):
AATAATAACATAAT
Left flanking sequence: Indices 306523 -- 307022
AGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATAACAATTATA
TATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACATT
ATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAAATTT
TTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGA
AAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATC
GGATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATG
AAAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAACT
ATATTAAATAATAAAAAAAAAATAATTAAAATTAAATTAAAATTA
Right flanking sequence: Indices 307065 -- 307564
CAAAAAAAAAATAAAAAGAAAGTAAGGATTTGTATTGAATGAATTCAATTAGTATTACAGAGATA
ATATTCACATAAATACACGAAAACTATGGGTAGAAGAAAGGAAGCTAGGAAAAAATTCGCGGGTT
TAGTCAATCAATATAAATCAATATTAATTAAATAGACTCAAATAGACTCAAAAAGTCTAATTTCC
CTTATTCGTTAAGAGAATTTCCAATGAAAAAAAAACTCATTGAAATTAAAAGGACTGGCAAATTT
TTTTATTTCGAGATCGAATTATTTCATTTATTCACTTGATTTTTTTCTATCCATCTTATATTAAT
TTCTATAAAATGAATTTCTATCACTAATAGAAAAAAAAAGATTTTTGTCGTTATAAGTTATAAAA
CAAAGTTATAAAACAAAGCATTCTATGATAAAAAAGAGATTCAATTAATTTGCGTATTATTTCAA
CATGATAAAATTTTTGAAAAAGAAAAAAGATATGATTTCGAAAAA
Found at i:307462 original size:13 final size:13
Alignment explanation
Indices: 307444--307472 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
307434 TTGTCGTTAT
307444 AAGTTATAAAACA
1 AAGTTATAAAACA
307457 AAGTTATAAAACA
1 AAGTTATAAAACA
307470 AAG
1 AAG
307473 CATTCTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.07, G:0.10, T:0.21
Consensus pattern (13 bp):
AAGTTATAAAACA
Left flanking sequence: Indices 306944 -- 307443
TAACCACAAAAATTCACTCTAAACTATATAAACTATATTAAATAATAAAAAAAAAATAATTAAAA
TTAAATTAAAATTAAATAATAACTTAAATAATAACATAATAATAATAACATAATAACAAAAAAAA
AATAAAAAGAAAGTAAGGATTTGTATTGAATGAATTCAATTAGTATTACAGAGATAATATTCACA
TAAATACACGAAAACTATGGGTAGAAGAAAGGAAGCTAGGAAAAAATTCGCGGGTTTAGTCAATC
AATATAAATCAATATTAATTAAATAGACTCAAATAGACTCAAAAAGTCTAATTTCCCTTATTCGT
TAAGAGAATTTCCAATGAAAAAAAAACTCATTGAAATTAAAAGGACTGGCAAATTTTTTTATTTC
GAGATCGAATTATTTCATTTATTCACTTGATTTTTTTCTATCCATCTTATATTAATTTCTATAAA
ATGAATTTCTATCACTAATAGAAAAAAAAAGATTTTTGTCGTTAT
Right flanking sequence: Indices 307473 -- 307972
CATTCTATGATAAAAAAGAGATTCAATTAATTTGCGTATTATTTCAACATGATAAAATTTTTGAA
AAAGAAAAAAGATATGATTTCGAAAAAAGTCATTAAAAATTTAAAATAAGAAAAAAAAAAAATTG
AATTTATTATCCTCCTAAATAGAAAATTGTTCAAAAAGACAATCGTTATTTTTATTTTCATTTTA
ATAGATGTTTTCATTTTAATATATGAAATTTTAATATATGAATTTTGAATATATGAATATAGATA
TGCTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTTG
GCCACGCCCCATTTCTATTTCTATTCAACACTCATAAAAAGTAATAGTAGTATGGGTTCTTCGTC
AATTCTTGCCCAAGTATCTATAAAATAAATTAAGATTAGCTTGTTGTTCGGATCTTAATATATGT
AGATAGAAAATTAAACTGAATTGATTGATTATAATATATAATTCA
Found at i:307725 original size:15 final size:14
Alignment explanation
Indices: 307680--307725 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 14
307670 AGATGTTTTC
307680 ATTTTAATATATGAA
1 ATTTTAATATATG-A
307695 ATTTTAATATATGA
1 ATTTTAATATATGA
307709 ATTTTGAATATATGA
1 ATTTT-AATATATGA
307724 AT
1 AT
307726 ATAGATATGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.20
15 24 0.80
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (14 bp):
ATTTTAATATATGA
Left flanking sequence: Indices 307180 -- 307679
AAAAATTCGCGGGTTTAGTCAATCAATATAAATCAATATTAATTAAATAGACTCAAATAGACTCA
AAAAGTCTAATTTCCCTTATTCGTTAAGAGAATTTCCAATGAAAAAAAAACTCATTGAAATTAAA
AGGACTGGCAAATTTTTTTATTTCGAGATCGAATTATTTCATTTATTCACTTGATTTTTTTCTAT
CCATCTTATATTAATTTCTATAAAATGAATTTCTATCACTAATAGAAAAAAAAAGATTTTTGTCG
TTATAAGTTATAAAACAAAGTTATAAAACAAAGCATTCTATGATAAAAAAGAGATTCAATTAATT
TGCGTATTATTTCAACATGATAAAATTTTTGAAAAAGAAAAAAGATATGATTTCGAAAAAAGTCA
TTAAAAATTTAAAATAAGAAAAAAAAAAAATTGAATTTATTATCCTCCTAAATAGAAAATTGTTC
AAAAAGACAATCGTTATTTTTATTTTCATTTTAATAGATGTTTTC
Right flanking sequence: Indices 307726 -- 308225
ATAGATATGCTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTA
CCACTTGGCCACGCCCCATTTCTATTTCTATTCAACACTCATAAAAAGTAATAGTAGTATGGGTT
CTTCGTCAATTCTTGCCCAAGTATCTATAAAATAAATTAAGATTAGCTTGTTGTTCGGATCTTAA
TATATGTAGATAGAAAATTAAACTGAATTGATTGATTATAATATATAATTCAATTATGATATTGT
ATATTGTAATTATGATATTGTATATTGTATGAAAATATGATTTCGTCTATTCTTATTCTTTCGTT
TTTGAGTTCAGAGAATTCAAGGATTTTTGATTAGGTGAGTTTAAATTTAAAGAACGTTTTTTGGT
CTACCTTATTTTTTATTTTATATTTTTTATTTTTTTTATTTTATATCAATAATATATTTATAACT
TTATATCAATAATATATTTATAACTGAGTCAAAATAGAATTATTT
Found at i:307988 original size:21 final size:22
Alignment explanation
Indices: 307964--308009 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
307954 GATTATAATA
307964 TATAATT-CAATTATGATATTG
1 TATAATTGCAATTATGATATTG
*
307985 TAT-ATTGTAATTATGATATTG
1 TATAATTGCAATTATGATATTG
308006 TATA
1 TATA
308010 TTGTATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.37, C:0.02, G:0.11, T:0.50
Consensus pattern (22 bp):
TATAATTGCAATTATGATATTG
Left flanking sequence: Indices 307464 -- 307963
AAAACAAAGCATTCTATGATAAAAAAGAGATTCAATTAATTTGCGTATTATTTCAACATGATAAA
ATTTTTGAAAAAGAAAAAAGATATGATTTCGAAAAAAGTCATTAAAAATTTAAAATAAGAAAAAA
AAAAAATTGAATTTATTATCCTCCTAAATAGAAAATTGTTCAAAAAGACAATCGTTATTTTTATT
TTCATTTTAATAGATGTTTTCATTTTAATATATGAAATTTTAATATATGAATTTTGAATATATGA
ATATAGATATGCTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCT
TACCACTTGGCCACGCCCCATTTCTATTTCTATTCAACACTCATAAAAAGTAATAGTAGTATGGG
TTCTTCGTCAATTCTTGCCCAAGTATCTATAAAATAAATTAAGATTAGCTTGTTGTTCGGATCTT
AATATATGTAGATAGAAAATTAAACTGAATTGATTGATTATAATA
Right flanking sequence: Indices 308010 -- 308509
TTGTATGAAAATATGATTTCGTCTATTCTTATTCTTTCGTTTTTGAGTTCAGAGAATTCAAGGAT
TTTTGATTAGGTGAGTTTAAATTTAAAGAACGTTTTTTGGTCTACCTTATTTTTTATTTTATATT
TTTTATTTTTTTTATTTTATATCAATAATATATTTATAACTTTATATCAATAATATATTTATAAC
TGAGTCAAAATAGAATTATTTTCAAGAACAAAATCTTTAACAAAATCTTTGTTATGCTTAATCTT
TTTAGTTTGATTTGTATCTGTCTTAATTCTGCCCTTTATTCAAGCAGTTTTTTCTTCACAAAATT
GCCCGAAGCCTACGCTTTTTTGAACCCAATCGTAGATATTATGCCAGTAATCCCTGTGCTTTTTT
TGCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAGATCTTTAATACTAGCCTAAA
AGAATTCACGATTTATTCGATAAAAAAAAAACTTATAGCAATTAG
Found at i:308010 original size:21 final size:21
Alignment explanation
Indices: 307972--308014 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
307962 TATATAATTC
307972 AATTATGATATTGTATATTGT
1 AATTATGATATTGTATATTGT
307993 AATTATGATATTGTATATTGT
1 AATTATGATATTGTATATTGT
308014 A
1 A
308015 TGAAAATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (21 bp):
AATTATGATATTGTATATTGT
Left flanking sequence: Indices 307472 -- 307971
GCATTCTATGATAAAAAAGAGATTCAATTAATTTGCGTATTATTTCAACATGATAAAATTTTTGA
AAAAGAAAAAAGATATGATTTCGAAAAAAGTCATTAAAAATTTAAAATAAGAAAAAAAAAAAATT
GAATTTATTATCCTCCTAAATAGAAAATTGTTCAAAAAGACAATCGTTATTTTTATTTTCATTTT
AATAGATGTTTTCATTTTAATATATGAAATTTTAATATATGAATTTTGAATATATGAATATAGAT
ATGCTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTT
GGCCACGCCCCATTTCTATTTCTATTCAACACTCATAAAAAGTAATAGTAGTATGGGTTCTTCGT
CAATTCTTGCCCAAGTATCTATAAAATAAATTAAGATTAGCTTGTTGTTCGGATCTTAATATATG
TAGATAGAAAATTAAACTGAATTGATTGATTATAATATATAATTC
Right flanking sequence: Indices 308015 -- 308514
TGAAAATATGATTTCGTCTATTCTTATTCTTTCGTTTTTGAGTTCAGAGAATTCAAGGATTTTTG
ATTAGGTGAGTTTAAATTTAAAGAACGTTTTTTGGTCTACCTTATTTTTTATTTTATATTTTTTA
TTTTTTTTATTTTATATCAATAATATATTTATAACTTTATATCAATAATATATTTATAACTGAGT
CAAAATAGAATTATTTTCAAGAACAAAATCTTTAACAAAATCTTTGTTATGCTTAATCTTTTTAG
TTTGATTTGTATCTGTCTTAATTCTGCCCTTTATTCAAGCAGTTTTTTCTTCACAAAATTGCCCG
AAGCCTACGCTTTTTTGAACCCAATCGTAGATATTATGCCAGTAATCCCTGTGCTTTTTTTGCTA
TTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAGATCTTTAATACTAGCCTAAAAGAAT
TCACGATTTATTCGATAAAAAAAAAACTTATAGCAATTAGCAATT
Found at i:308133 original size:7 final size:7
Alignment explanation
Indices: 308121--308159 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
308111 TTGGTCTACC
308121 TTATTTT
1 TTATTTT
308128 TTATTTT
1 TTATTTT
*
308135 ATATTTT
1 TTATTTT
308142 TTATTTT
1 TTATTTT
308149 TT-TTATT
1 TTATT-TT
308156 TTAT
1 TTAT
308160 ATCAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
6 2 0.07
7 25 0.89
8 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTATTTT
Left flanking sequence: Indices 307621 -- 308120
ATAGAAAATTGTTCAAAAAGACAATCGTTATTTTTATTTTCATTTTAATAGATGTTTTCATTTTA
ATATATGAAATTTTAATATATGAATTTTGAATATATGAATATAGATATGCTCTGGGACGGAAGGA
TTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTTGGCCACGCCCCATTTCTAT
TTCTATTCAACACTCATAAAAAGTAATAGTAGTATGGGTTCTTCGTCAATTCTTGCCCAAGTATC
TATAAAATAAATTAAGATTAGCTTGTTGTTCGGATCTTAATATATGTAGATAGAAAATTAAACTG
AATTGATTGATTATAATATATAATTCAATTATGATATTGTATATTGTAATTATGATATTGTATAT
TGTATGAAAATATGATTTCGTCTATTCTTATTCTTTCGTTTTTGAGTTCAGAGAATTCAAGGATT
TTTGATTAGGTGAGTTTAAATTTAAAGAACGTTTTTTGGTCTACC
Right flanking sequence: Indices 308160 -- 308659
ATCAATAATATATTTATAACTTTATATCAATAATATATTTATAACTGAGTCAAAATAGAATTATT
TTCAAGAACAAAATCTTTAACAAAATCTTTGTTATGCTTAATCTTTTTAGTTTGATTTGTATCTG
TCTTAATTCTGCCCTTTATTCAAGCAGTTTTTTCTTCACAAAATTGCCCGAAGCCTACGCTTTTT
TGAACCCAATCGTAGATATTATGCCAGTAATCCCTGTGCTTTTTTTGCTATTAGCCTTTGTTTGG
CAAGCTGCTGTAAGTTTTCGATGAGATCTTTAATACTAGCCTAAAAGAATTCACGATTTATTCGA
TAAAAAAAAAACTTATAGCAATTAGCAATTAATAAGATCAAATAAGTCTTATAGTCGAAGTCCTC
AATTTAAACATTGAAGTGATTGTATAGACGCGAGAAATCTCGATTCCTCCAGTTTTGAATTTTTT
TTTTTCATTCTATTGAAAGAAATCCTATTAGAGTCCCCCGCACTA
Found at i:308185 original size:25 final size:25
Alignment explanation
Indices: 308155--308205 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
308145 TTTTTTTTAT
308155 TTTATATCAATAATATATTTATAAC
1 TTTATATCAATAATATATTTATAAC
308180 TTTATATCAATAATATATTTATAAC
1 TTTATATCAATAATATATTTATAAC
308205 T
1 T
308206 GAGTCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (25 bp):
TTTATATCAATAATATATTTATAAC
Left flanking sequence: Indices 307655 -- 308154
TATTTTCATTTTAATAGATGTTTTCATTTTAATATATGAAATTTTAATATATGAATTTTGAATAT
ATGAATATAGATATGCTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTT
GCCTTACCACTTGGCCACGCCCCATTTCTATTTCTATTCAACACTCATAAAAAGTAATAGTAGTA
TGGGTTCTTCGTCAATTCTTGCCCAAGTATCTATAAAATAAATTAAGATTAGCTTGTTGTTCGGA
TCTTAATATATGTAGATAGAAAATTAAACTGAATTGATTGATTATAATATATAATTCAATTATGA
TATTGTATATTGTAATTATGATATTGTATATTGTATGAAAATATGATTTCGTCTATTCTTATTCT
TTCGTTTTTGAGTTCAGAGAATTCAAGGATTTTTGATTAGGTGAGTTTAAATTTAAAGAACGTTT
TTTGGTCTACCTTATTTTTTATTTTATATTTTTTATTTTTTTTAT
Right flanking sequence: Indices 308206 -- 308705
GAGTCAAAATAGAATTATTTTCAAGAACAAAATCTTTAACAAAATCTTTGTTATGCTTAATCTTT
TTAGTTTGATTTGTATCTGTCTTAATTCTGCCCTTTATTCAAGCAGTTTTTTCTTCACAAAATTG
CCCGAAGCCTACGCTTTTTTGAACCCAATCGTAGATATTATGCCAGTAATCCCTGTGCTTTTTTT
GCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAGATCTTTAATACTAGCCTAAAA
GAATTCACGATTTATTCGATAAAAAAAAAACTTATAGCAATTAGCAATTAATAAGATCAAATAAG
TCTTATAGTCGAAGTCCTCAATTTAAACATTGAAGTGATTGTATAGACGCGAGAAATCTCGATTC
CTCCAGTTTTGAATTTTTTTTTTTCATTCTATTGAAAGAAATCCTATTAGAGTCCCCCGCACTAT
ATAATTAAAATTGTGGATATGAAAGAAAGAAAATTTTTGGCAATG
Found at i:309078 original size:15 final size:15
Alignment explanation
Indices: 309058--309109 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
309048 TTAAATTCAA
309058 TAAAACAAAAGTAAC
1 TAAAACAAAAGTAAC
309073 TAAAACAAAA--AA-
1 TAAAACAAAAGTAAC
309085 -AAAACAAAAGTAAC
1 TAAAACAAAAGTAAC
309099 TAAAACAAAAG
1 TAAAACAAAAG
309110 AAAAAAAGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
11 9 0.27
13 4 0.12
15 20 0.61
ACGTcount: A:0.73, C:0.12, G:0.06, T:0.10
Consensus pattern (15 bp):
TAAAACAAAAGTAAC
Left flanking sequence: Indices 308558 -- 309057
CATTGAAGTGATTGTATAGACGCGAGAAATCTCGATTCCTCCAGTTTTGAATTTTTTTTTTTCAT
TCTATTGAAAGAAATCCTATTAGAGTCCCCCGCACTATATAATTAAAATTGTGGATATGAAAGAA
AGAAAATTTTTGGCAATGAAAGATTGGACTCTTATTACAAATGAATTTATACAATTTTTTTTTTA
TTTCTAGAAATCACTTTGTTTCTTGATGTCAAAATAGTATATGTGGTATAAAAAGAAAGAATCTA
TTTTCTTTTTTCTTTTTCCAAACCAAAAAAAGATCTTGGAGATTGTATAATGCTTACTCTCAAAC
TCTTTGTTTACACAGTAGTGATATTCTTTGTTTCTCTCTTCATCTTCGGATTTTTATCTAATGAT
CCGGGGCGCAATCCGGGACGTGAAGAATAAAACATAATCGTTTTTCCTTTCTTGATTTTTAAATC
TTTTGAACATTTTCCTTATTCTACATCTTTAACTATTAAATTCAA
Right flanking sequence: Indices 309110 -- 309609
AAAAAAAGATTCGATAAATTTGACAGATAATAAAGATAAAAAAAAAAATACCAAGTTATCAACAG
AACCGGAAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGCCTACATAGCAGTTCCAATGCTACG
CCTTGAACCACTCGGCCATCTCTCCTACATAATGATTATGGCCCCGAAACCGAGTGAATCGCGAG
TCAGTCCTATTAGATTGTTGGATAGGTACACTACGTACAATCAATTCTAAACAAAAAAAAAAAAT
AGGAAACTTTTAATCAAATAAAGACCTTTCCTTCGGGATTGGGGGATAAAAATAATTTTTTTTTT
TGTTTTTGTGAAATGTGAAAAACTCTTTATTAACATTAACAACAATCTTTAGTAAAAACAATAAA
GATCCATTCATGGTTGCGAAAGCAGCGATTCCGTCTTTTTCTGCTATCTATATCGGCTTAAATCA
ATGATTTGGAATGACTCGAAGGATCGTCCTATCTTTTTTTTTATG
Found at i:309092 original size:26 final size:27
Alignment explanation
Indices: 309059--309115 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
309049 TAAATTCAAT
309059 AAAACAAAAGTAACTAAAACAAAA-AA
1 AAAACAAAAGTAACTAAAACAAAAGAA
309085 AAAACAAAAGTAACTAAAACAAAAGAA
1 AAAACAAAAGTAACTAAAACAAAAGAA
309112 AAAA
1 AAAA
309116 AGATTCGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.77, C:0.11, G:0.05, T:0.07
Consensus pattern (27 bp):
AAAACAAAAGTAACTAAAACAAAAGAA
Left flanking sequence: Indices 308559 -- 309058
ATTGAAGTGATTGTATAGACGCGAGAAATCTCGATTCCTCCAGTTTTGAATTTTTTTTTTTCATT
CTATTGAAAGAAATCCTATTAGAGTCCCCCGCACTATATAATTAAAATTGTGGATATGAAAGAAA
GAAAATTTTTGGCAATGAAAGATTGGACTCTTATTACAAATGAATTTATACAATTTTTTTTTTAT
TTCTAGAAATCACTTTGTTTCTTGATGTCAAAATAGTATATGTGGTATAAAAAGAAAGAATCTAT
TTTCTTTTTTCTTTTTCCAAACCAAAAAAAGATCTTGGAGATTGTATAATGCTTACTCTCAAACT
CTTTGTTTACACAGTAGTGATATTCTTTGTTTCTCTCTTCATCTTCGGATTTTTATCTAATGATC
CGGGGCGCAATCCGGGACGTGAAGAATAAAACATAATCGTTTTTCCTTTCTTGATTTTTAAATCT
TTTGAACATTTTCCTTATTCTACATCTTTAACTATTAAATTCAAT
Right flanking sequence: Indices 309116 -- 309615
AGATTCGATAAATTTGACAGATAATAAAGATAAAAAAAAAAATACCAAGTTATCAACAGAACCGG
AAAGAGAGGGATTCGAACCCTCGGTAAACAAAAGCCTACATAGCAGTTCCAATGCTACGCCTTGA
ACCACTCGGCCATCTCTCCTACATAATGATTATGGCCCCGAAACCGAGTGAATCGCGAGTCAGTC
CTATTAGATTGTTGGATAGGTACACTACGTACAATCAATTCTAAACAAAAAAAAAAAATAGGAAA
CTTTTAATCAAATAAAGACCTTTCCTTCGGGATTGGGGGATAAAAATAATTTTTTTTTTTGTTTT
TGTGAAATGTGAAAAACTCTTTATTAACATTAACAACAATCTTTAGTAAAAACAATAAAGATCCA
TTCATGGTTGCGAAAGCAGCGATTCCGTCTTTTTCTGCTATCTATATCGGCTTAAATCAATGATT
TGGAATGACTCGAAGGATCGTCCTATCTTTTTTTTTATGAGTTGA
Found at i:311692 original size:14 final size:14
Alignment explanation
Indices: 311675--311714 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
311665 TTATTTATTA
311675 TTTAGTATTTGTTT
1 TTTAGTATTTGTTT
* *
311689 TTTAATATTT-ATT
1 TTTAGTATTTGTTT
311702 TTTAGTATTTGTT
1 TTTAGTATTTGTT
311715 ATATATTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (14 bp):
TTTAGTATTTGTTT
Left flanking sequence: Indices 311175 -- 311674
GAGAGAAGGTCTTTTTCAAGGATTCTATATCTATATAAATTTATATATGAAATCGAGATAGTTAC
CTTTCAGAAAATTCTAACAATAGTAGAATGCCTATATTTGTTTGTTTTATTCTTCTGAAGGTGGG
AGAAAAGATAAAACTGATTATTAATCAAATCAAAATTCAAGTTTGAAACTCATGTGATTACCCTC
TTTTGGTTAACTCGAGAAAAAAAAAATAGGGCATCCAAAGAATTAACTGCGGAGCCGTATGAGGT
AGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAATTACTCGCCTATTCCGACCGAGGGGAACAG
GCCATTCGGCAAGGAGACTCTGAAATTGCGGAGGCGTGGTTCGATCAAGCCGCTGAATATTGGAA
ACAAGCTATAGCACTTACTCCTGGAAATTATATTGAAGCGCAGAATTGGTTGAAGATTACAAGGC
GTTTCGAATAAGGAATAAGATAAGACGACTCTCTTTTATTTATTA
Right flanking sequence: Indices 311715 -- 312146
ATATATTTTTTTTTTTAGTTTAATTTGTTATAATTAATTGTTTATTGTCCCCATCAGTCAAATAA
AACAGATCATTTCTGTGGGAAGAACCGATCAAAGAATTTTATGAAGTTCATTATACTCGTTCTAA
AATTGTTTCTTTTCATCTGATATTTCATAGGAATAAACAATATACGACACAAATACAGACAGTAG
AGAATAGATATTTTCTAGATTTTAATTTTATTTTATATTTTCCTTTTCTGTTTTTTCTGTTATTA
AAATTAATAAAAGATACCTTTTGAATGCTTAAATATAGATACTGAGGTGTCCCTTAGGAATGACT
AATGACTTCTAATCTGATTTGGAATAGAGTAAGAGTAATAGTAATATGTTCTATGTAAAACATAA
AGAAACCCCATCTAGGAAACTTTTAATTAAGATAGGAATACA
Found at i:311730 original size:27 final size:27
Alignment explanation
Indices: 311666--311733 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
311656 GACTCTCTTT
* *
311666 TATTTATTATTTAGTATTTGTTTTTTAA
1 TATTTATT-TTTAGTATTTGTTATATAA
311694 TATTTATTTTTAGTATTTGTTATAT-A
1 TATTTATTTTTAGTATTTGTTATATAA
* *
311720 TTTTTTTTTTTAGT
1 TATTTATTTTTAGT
311734 TTAATTTGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 13 0.36
27 15 0.42
28 8 0.22
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (27 bp):
TATTTATTTTTAGTATTTGTTATATAA
Left flanking sequence: Indices 311166 -- 311665
CTTTCTTATGAGAGAAGGTCTTTTTCAAGGATTCTATATCTATATAAATTTATATATGAAATCGA
GATAGTTACCTTTCAGAAAATTCTAACAATAGTAGAATGCCTATATTTGTTTGTTTTATTCTTCT
GAAGGTGGGAGAAAAGATAAAACTGATTATTAATCAAATCAAAATTCAAGTTTGAAACTCATGTG
ATTACCCTCTTTTGGTTAACTCGAGAAAAAAAAAATAGGGCATCCAAAGAATTAACTGCGGAGCC
GTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAATTACTCGCCTATTCCGACCGA
GGGGAACAGGCCATTCGGCAAGGAGACTCTGAAATTGCGGAGGCGTGGTTCGATCAAGCCGCTGA
ATATTGGAAACAAGCTATAGCACTTACTCCTGGAAATTATATTGAAGCGCAGAATTGGTTGAAGA
TTACAAGGCGTTTCGAATAAGGAATAAGATAAGACGACTCTCTTT
Right flanking sequence: Indices 311734 -- 312146
TTAATTTGTTATAATTAATTGTTTATTGTCCCCATCAGTCAAATAAAACAGATCATTTCTGTGGG
AAGAACCGATCAAAGAATTTTATGAAGTTCATTATACTCGTTCTAAAATTGTTTCTTTTCATCTG
ATATTTCATAGGAATAAACAATATACGACACAAATACAGACAGTAGAGAATAGATATTTTCTAGA
TTTTAATTTTATTTTATATTTTCCTTTTCTGTTTTTTCTGTTATTAAAATTAATAAAAGATACCT
TTTGAATGCTTAAATATAGATACTGAGGTGTCCCTTAGGAATGACTAATGACTTCTAATCTGATT
TGGAATAGAGTAAGAGTAATAGTAATATGTTCTATGTAAAACATAAAGAAACCCCATCTAGGAAA
CTTTTAATTAAGATAGGAATACA
Done.