123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068216
Parameters: 2 7 7 80 10 50 500
Length:  2064773

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1379055--1379091	18	2.1	18	89	0	56	27	24	8	40	1.83
1409508--1409545	17	2.3	16	86	13	51	7	10	2	78	1.04
1461077--1461105	12	2.3	13	94	5	51	20	27	6	44	1.77
1471580--1471605	13	2.0	13	100	0	52	38	7	30	23	1.83
1489751--1489784	15	2.3	15	89	0	50	17	38	2	41	1.65
1495088--1495132	22	2.0	22	86	0	63	37	4	37	20	1.73
1495171--1495206	18	2.0	18	94	0	63	52	8	27	11	1.65
1495182--1495226	23	2.0	23	90	0	72	51	6	31	11	1.63
1495171--1495243	18	3.8	18	73	19	58	49	8	30	12	1.69
1500649--1500722	37	2.0	37	100	0	148	27	24	24	24	2.00
1528209--1528245	19	1.9	19	100	0	74	24	16	21	37	1.93
1537086--1537119	11	3.1	11	100	0	68	55	17	0	26	1.42
1562210--1562245	18	2.0	18	100	0	72	50	16	27	5	1.68
1565789--1565824	16	2.2	16	95	0	63	58	19	5	16	1.58
1579329--1579365	19	2.0	19	94	5	67	16	27	8	48	1.74
1585137--1585163	14	1.9	14	100	0	54	29	0	22	48	1.51
1589477--1589515	19	2.1	19	95	0	69	33	23	35	7	1.83
1615010--1615103	49	2.0	46	87	8	136	18	18	26	37	1.93
1619568--1619607	20	2.0	20	90	0	62	30	20	37	12	1.89
1622792--1622838	26	2.0	24	84	16	62	31	17	25	25	1.97
1626855--1626921	21	3.2	21	100	0	134	8	31	26	32	1.87
1632699--1632728	15	1.9	16	93	6	53	0	30	6	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1633571--1633597	9	3.0	9	100	0	54	11	55	0	33	1.35
1639544--1639587	13	3.6	12	87	6	54	22	36	9	31	1.86
1639550--1639588	13	3.0	13	88	0	60	20	35	12	30	1.90
1651919--1651971	25	2.1	25	89	0	79	11	33	15	39	1.83
1687179--1687222	22	2.0	22	100	0	88	22	18	22	36	1.95
1718115--1718139	12	2.1	12	100	0	50	44	8	16	32	1.76
1728199--1728232	12	2.8	12	95	0	59	32	17	44	5	1.73
1739270--1739325	15	3.7	15	78	0	67	28	23	35	12	1.91
1739259--1739328	30	2.3	30	90	0	113	30	21	34	14	1.93
1753162--1753275	61	1.9	59	92	3	192	35	22	13	28	1.92
1760208--1760245	19	2.0	19	94	0	67	39	15	28	15	1.89
1760310--1760358	24	2.0	24	92	0	80	51	16	14	18	1.77
1761168--1761207	19	2.1	19	85	0	53	32	20	12	35	1.90
1772302--1772360	18	3.3	18	100	0	118	22	30	30	16	1.96
1773528--1773569	15	2.8	15	89	7	59	59	14	0	26	1.35
1801416--1801451	18	2.0	18	100	0	72	55	5	16	22	1.62
1811430--1811482	16	3.3	15	72	12	52	18	5	9	66	1.41
1812989--1813028	21	1.9	21	84	0	53	32	2	52	12	1.52
1826099--1826128	15	2.0	15	100	0	60	26	20	20	33	1.97
1826425--1826456	12	2.7	12	100	0	64	18	21	15	43	1.87
1838160--1838196	18	2.1	18	100	0	74	32	21	8	37	1.83
1861133--1861175	18	2.4	18	80	0	50	62	25	9	2	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1867232--1867299	22	3.0	22	93	4	109	35	8	41	14	1.77
1876544--1876605	28	2.2	29	94	2	108	25	22	24	27	2.00
1876550--1876601	16	3.5	16	70	20	58	26	23	26	23	2.00
1880404--1880442	17	2.2	19	86	9	55	33	20	17	28	1.96
1911989--1912030	22	1.9	22	95	0	75	23	26	9	40	1.85
1920035--1920076	21	2.0	21	95	0	75	30	33	4	30	1.78
1926347--1926408	18	3.5	18	71	4	63	12	43	11	32	1.79
1944610--1944645	18	2.0	18	94	0	63	30	5	19	44	1.73
1950966--1950997	16	2.0	16	100	0	64	43	18	18	18	1.88
1983975--1984007	12	2.8	12	95	0	57	66	0	12	21	1.23
2004508--2004541	17	2.0	17	100	0	68	29	11	5	52	1.61
2029221--2029248	14	2.0	14	100	0	56	42	14	21	21	1.88
2031624--2031675	25	2.2	23	83	12	70	23	26	11	38	1.89
2031632--2031682	25	2.0	25	100	0	102	23	29	11	35	1.90

Tables:   1   2

The End!