123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068215
Parameters: 2 7 7 80 10 50 500
Length:  2222920

Tables:   1   2   

This is table  1  of  2  ( 201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130--173	22	2.0	22	100	0	88	36	18	31	13	1.90
715--753	19	2.1	19	95	0	69	17	17	20	43	1.88
8370--8395	13	2.0	13	100	0	52	30	7	23	38	1.83
10281--10415	72	1.9	72	95	0	243	30	13	20	35	1.91
10277--10433	72	2.2	72	83	11	221	29	13	20	36	1.91
16277--16325	24	2.0	24	88	7	73	30	18	22	28	1.97
16887--16919	17	1.9	17	100	0	66	42	6	21	30	1.77
21201--21257	24	2.4	24	85	11	73	26	22	17	33	1.96
60098--60146	24	2.0	24	92	7	82	24	26	12	36	1.91
79165--79195	12	2.6	12	94	0	53	0	25	25	48	1.52
79872--79933	31	2.0	31	96	0	115	22	27	12	37	1.91
104675--104709	17	2.1	17	100	0	70	37	5	28	28	1.80
117010--117058	24	2.0	24	96	0	89	16	14	16	53	1.74
117123--117160	19	2.0	19	89	0	58	15	28	18	36	1.92
117180--117236	30	1.9	30	100	0	114	17	21	8	52	1.71
121065--121122	26	2.2	26	90	6	91	15	17	20	46	1.84
122223--122291	33	2.1	33	91	5	113	33	20	13	33	1.91
136923--136959	16	2.3	16	100	0	74	10	37	24	27	1.88
169061--169094	15	2.3	15	90	10	52	58	8	20	11	1.59
171249--171280	12	2.7	12	100	0	64	43	15	21	18	1.87
171575--171604	15	2.0	15	100	0	60	33	20	20	26	1.97
177998--178055	21	2.8	21	84	7	73	24	31	25	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184275--184321	24	2.0	24	95	0	85	17	25	17	40	1.90
185206--185239	14	2.4	14	90	0	50	17	29	26	26	1.98
200270--200321	27	1.9	27	96	0	95	19	21	21	38	1.94
223039--223090	24	2.2	23	93	6	95	23	26	15	34	1.94
232428--232475	16	2.9	17	87	6	71	33	6	8	52	1.57
250955--251002	21	2.2	22	81	3	53	35	20	20	22	1.96
263621--263660	19	2.1	19	100	0	80	15	20	15	50	1.79
273918--273954	19	1.9	19	94	0	65	45	16	2	35	1.61
276164--276205	21	2.0	21	90	0	66	33	4	28	33	1.78
276665--276709	23	2.0	23	95	0	81	28	26	13	31	1.94
277398--277448	21	2.4	21	90	6	77	27	35	17	19	1.94
286127--286158	16	2.0	16	100	0	64	18	18	18	43	1.88
295112--295184	24	3.0	24	94	4	121	28	21	19	30	1.98
295194--295322	69	1.9	69	100	0	258	27	20	21	30	1.98
316107--316179	24	3.0	24	94	4	121	30	19	21	28	1.98
316548--316601	18	3.0	18	94	0	90	38	14	25	20	1.91
322574--322604	11	2.8	11	95	0	53	25	35	12	25	1.92
369483--369522	20	2.0	20	90	0	62	30	20	37	12	1.89
372721--372767	26	2.0	24	84	16	62	31	17	25	25	1.97
379886--379944	30	2.0	30	89	0	91	13	11	16	57	1.65
439131--439161	16	1.9	16	93	0	53	35	35	12	16	1.87
472029--472070	21	2.0	21	95	0	75	30	4	33	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473721--473764	21	2.2	20	83	4	52	11	50	2	36	1.51
481872--481942	24	3.0	24	85	0	106	28	18	26	26	1.98
482754--482839	24	3.6	23	85	6	118	31	16	24	27	1.96
514165--514211	20	2.2	21	77	14	51	44	21	17	17	1.86
514174--514214	20	2.0	20	95	0	73	39	24	14	21	1.91
522524--522585	29	2.1	29	84	0	79	14	30	24	30	1.95
523023--523067	23	2.0	23	91	4	74	15	40	8	35	1.79
524267--524302	18	2.0	18	88	0	54	11	36	13	38	1.81
526265--526297	16	2.1	16	100	0	66	36	18	18	27	1.94
539626--539668	22	2.0	22	90	9	70	39	20	11	27	1.88
540544--540591	21	2.2	22	81	3	53	22	20	20	35	1.96
559071--559118	17	2.9	17	87	3	71	52	8	6	33	1.57
568446--568505	24	2.4	24	88	8	84	36	16	25	21	1.94
568456--568507	24	2.2	23	93	6	95	34	15	26	23	1.94
571082--571132	24	2.1	24	100	0	102	27	19	15	37	1.92
578641--578668	14	2.0	14	100	0	56	50	14	7	28	1.69
583253--583277	12	2.1	12	100	0	50	32	16	8	44	1.76
599327--599354	13	2.2	13	100	0	56	21	14	21	42	1.88
629939--629998	26	2.3	25	86	8	84	25	8	30	36	1.85
629950--629999	26	1.9	26	95	0	91	24	8	30	38	1.84
633870--633899	14	2.1	14	100	0	60	36	0	20	43	1.52
641413--641454	21	2.0	21	95	0	75	42	9	21	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641823--641863	20	2.0	20	95	0	73	48	12	29	9	1.72
641971--642007	19	1.9	19	94	0	65	21	24	24	29	1.99
691686--691748	24	2.7	23	82	7	72	30	17	23	28	1.97
723689--723715	14	1.9	14	100	0	54	22	33	0	44	1.53
733898--733984	44	2.0	45	90	2	140	25	19	28	26	1.99
734662--734720	24	2.5	24	94	0	100	44	13	30	11	1.80
750323--750382	31	1.9	31	93	0	102	38	11	26	23	1.89
753273--753313	21	2.0	21	90	4	66	34	12	31	21	1.91
753294--753322	15	1.9	15	100	0	58	41	6	31	20	1.79
760269--760294	13	2.0	13	100	0	52	46	7	15	30	1.74
786342--786384	20	2.2	20	83	8	52	16	0	25	58	1.38
799077--799173	24	4.0	24	90	2	151	31	16	23	27	1.96
799812--799846	18	1.9	18	94	0	61	25	34	17	22	1.96
804463--804521	18	3.3	18	72	11	50	37	25	25	11	1.90
822683--822744	24	2.6	24	92	0	97	29	24	16	30	1.96
822771--822899	69	1.9	69	96	3	242	27	20	22	30	1.98
834187--834222	17	2.1	18	94	5	65	47	8	38	5	1.57
843410--843444	17	2.1	17	94	0	61	25	14	5	54	1.62
844164--844205	22	1.9	22	90	0	66	28	30	19	21	1.97
846033--846081	24	2.0	24	100	0	98	24	26	12	36	1.91
846091--846219	69	1.9	69	96	3	242	27	20	22	30	1.98
905635--905683	24	2.0	24	92	7	82	24	26	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
909473--909527	28	1.9	29	92	3	94	34	23	27	14	1.94
926792--926830	16	2.4	16	80	16	53	33	7	30	28	1.85
961498--961529	14	2.3	14	94	0	55	28	12	28	31	1.93
964734--964909	31	5.7	31	100	0	352	38	17	25	19	1.93
968822--968872	25	2.0	25	88	7	77	49	19	17	13	1.80
974701--974728	13	2.2	13	100	0	56	17	21	14	46	1.84
980869--980898	14	2.2	14	94	5	53	86	0	13	0	0.57
998455--998504	24	2.2	23	85	7	66	34	20	20	26	1.96
1040230--1040281	19	2.9	19	78	18	67	19	7	23	50	1.73
1040314--1040357	22	2.0	22	100	0	88	22	4	22	50	1.67
1040389--1040436	24	2.0	24	95	0	87	37	12	18	31	1.88
1043226--1043259	11	3.1	11	100	0	68	26	0	17	55	1.42
1044595--1044627	12	2.6	13	85	9	50	75	0	24	0	0.80
1047772--1047817	24	1.9	24	100	0	92	39	10	30	19	1.86
1084703--1084728	13	2.0	13	100	0	52	38	7	30	23	1.83
1101869--1101912	23	1.9	23	95	0	79	27	20	43	9	1.82
1110157--1110190	17	2.0	17	100	0	68	17	11	23	47	1.81
1118360--1118434	39	1.9	39	97	0	141	32	26	25	16	1.96
1133432--1133491	30	2.0	30	93	0	102	15	16	21	46	1.83
1144061--1144090	15	2.0	15	100	0	60	40	20	6	33	1.78
1144953--1145005	26	2.0	26	92	0	88	18	26	22	32	1.97
1170951--1170996	24	1.9	24	81	0	56	32	19	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190131--1190227	24	4.0	24	90	2	151	31	16	23	27	1.96
1198962--1199022	31	2.0	30	87	6	88	29	16	21	32	1.95
1244529--1244582	27	2.0	27	96	0	99	25	18	27	27	1.98
1262049--1262089	20	2.0	20	95	0	73	29	43	0	26	1.55
1262236--1262265	15	2.0	15	100	0	60	20	20	26	33	1.97
1262352--1262382	15	2.1	15	100	0	62	54	12	25	6	1.62
1262527--1262556	15	2.1	14	93	6	51	30	36	6	26	1.82
1262698--1262742	18	2.6	18	92	3	74	37	8	35	17	1.81
1268008--1268032	13	1.9	13	100	0	50	32	12	24	32	1.91
1269003--1269046	20	2.2	20	83	0	52	20	31	4	43	1.72

Tables:   1   2