123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_068017
Parameters: 2 7 7 80 10 50 500
Length:  878988

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12483--12524	13	3.2	13	96	0	75	38	21	14	26	1.91
34032--34077	22	2.1	22	87	0	65	43	15	4	36	1.66
34023--34062	17	2.4	17	83	4	55	42	15	5	37	1.68
44571--44599	7	4.1	7	100	0	58	13	41	0	44	1.44
75600--75639	10	4.0	10	86	0	53	2	25	15	57	1.50
115364--115406	16	2.6	17	92	7	79	41	13	4	39	1.66
136349--136374	13	2.0	13	100	0	52	7	15	23	53	1.67
164118--164181	32	2.0	32	100	0	128	40	15	15	28	1.88
178932--178998	34	2.0	34	100	0	134	17	20	17	43	1.88
181853--181918	34	2.0	33	96	3	123	45	6	24	24	1.75
182587--182655	19	3.6	19	90	0	111	28	18	13	39	1.88
196363--200712	40	104.7	43	73	20	1708	0	0	80	19	0.71
196364--201723	161	31.9	172	75	18	2256	0	0	83	16	0.67
196361--202579	224	28.0	234	77	16	2590	0	0	85	14	0.64
197419--202611	1	5193.0	1	77	0	4563	0	0	87	11	0.58
211580--211622	16	2.6	17	92	7	79	41	13	4	39	1.66
232225--232252	13	2.2	13	100	0	56	14	25	21	39	1.91
235871--235898	13	2.2	13	100	0	56	39	21	25	14	1.91
237002--237047	18	2.3	21	71	21	53	19	39	13	28	1.89
255848--255890	18	2.4	18	81	18	54	18	20	25	34	1.96
268924--269002	39	2.0	39	97	0	149	21	27	18	31	1.97
269349--269391	16	2.6	17	92	7	79	39	4	13	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285765--285802	5	7.6	5	93	0	67	60	0	36	2	1.11
300039--300094	25	2.2	25	93	0	103	37	21	12	28	1.90
309590--309629	21	1.9	21	85	10	55	72	2	2	22	1.09
317660--317756	42	2.3	42	81	13	103	34	28	27	9	1.88
317940--317996	17	2.8	22	72	27	70	10	29	17	42	1.83
318131--318187	17	3.4	17	92	0	87	38	26	24	10	1.88
318210--318243	17	2.0	17	94	0	59	35	26	26	11	1.91
391252--391294	18	2.3	18	84	4	50	53	6	27	11	1.63
401591--401635	13	3.2	13	77	17	54	28	17	28	24	1.97
422265--422290	13	2.0	13	100	0	52	53	23	15	7	1.67
443231--443273	16	2.6	17	92	7	79	39	4	13	41	1.66
451909--451949	20	2.0	20	100	0	82	19	31	19	29	1.96
483048--483087	10	4.0	10	86	0	53	57	15	25	2	1.50
488648--488705	28	2.0	29	90	9	93	18	37	17	25	1.93
514087--514115	7	4.1	7	100	0	58	44	0	41	13	1.44
524609--524654	22	2.1	22	87	0	65	36	4	15	43	1.66
546162--546203	13	3.2	13	96	0	75	26	14	21	38	1.91
554290--554347	27	2.2	27	84	3	73	29	20	24	25	1.99
561450--561487	19	2.0	19	89	0	58	39	18	34	7	1.80
563918--563960	16	2.6	17	92	7	79	39	4	13	41	1.66
568998--569040	16	2.6	17	92	7	79	39	4	13	41	1.66
587269--587343	34	2.2	34	97	0	141	45	17	21	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625909--625950	7	6.0	7	78	10	50	66	2	28	2	1.16
661146--661187	12	3.4	12	81	15	50	4	19	23	52	1.65
664075--664105	15	2.1	15	93	0	53	32	29	32	6	1.83
669192--669234	18	2.3	18	84	4	50	53	6	27	11	1.63
684512--684632	64	1.9	63	91	1	197	19	21	23	36	1.95
686518--686614	9	10.8	9	93	0	167	11	14	11	62	1.54
686514--686614	18	5.6	18	98	0	184	11	14	11	61	1.57
719506--719607	53	1.9	53	100	0	204	26	21	29	22	1.99
719667--719705	19	2.1	19	100	0	78	5	33	20	41	1.74
733992--734033	21	2.0	21	100	0	84	47	9	14	28	1.75
739977--740026	24	2.1	24	100	0	100	30	20	12	38	1.88
744364--744406	16	2.6	17	92	7	79	41	13	4	39	1.66
752816--752840	12	2.1	12	100	0	50	0	24	24	52	1.48
756744--756786	16	2.6	17	92	7	79	41	13	4	39	1.66
799912--800057	79	1.9	78	84	6	201	33	28	29	8	1.86
799888--800057	37	4.3	39	82	9	186	33	27	30	8	1.87
824740--824774	18	1.9	18	94	0	61	11	20	25	42	1.85
853204--853278	34	2.2	34	97	0	141	16	21	17	45	1.85
853791--853841	1	51.0	1	92	0	84	3	0	0	96	0.24
853857--853899	2	22.5	2	86	9	54	44	0	0	55	0.99
853867--853901	13	2.7	13	90	0	61	48	0	0	51	1.00
868635--868677	16	2.6	17	92	7	79	41	13	4	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
873715--873757	16	2.6	17	92	7	79	41	13	4	39	1.66
876188--876225	19	2.0	19	89	0	58	7	34	18	39	1.80

Tables:   1

The End!